Query 008466
Match_columns 564
No_of_seqs 650 out of 3342
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 12:31:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008466.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008466hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2535 RNA polymerase II elon 100.0 7E-149 1E-153 1107.7 38.4 553 12-564 2-554 (554)
2 COG1243 ELP3 Histone acetyltra 100.0 3E-134 7E-139 1041.2 47.3 513 36-563 1-515 (515)
3 TIGR01211 ELP3 histone acetylt 100.0 3E-116 7E-121 956.9 53.3 516 38-563 1-522 (522)
4 PRK08207 coproporphyrinogen II 100.0 1.4E-45 2.9E-50 402.2 29.9 304 37-422 111-432 (488)
5 PRK06582 coproporphyrinogen II 100.0 6.1E-46 1.3E-50 396.2 24.8 246 114-419 13-259 (390)
6 PRK09057 coproporphyrinogen II 100.0 4E-45 8.7E-50 389.4 25.6 246 115-420 7-253 (380)
7 PRK07379 coproporphyrinogen II 100.0 1.5E-44 3.3E-49 387.1 24.9 251 114-419 12-264 (400)
8 COG0635 HemN Coproporphyrinoge 100.0 1.2E-43 2.6E-48 380.3 24.8 252 114-424 36-291 (416)
9 PRK06294 coproporphyrinogen II 100.0 6.1E-43 1.3E-47 371.3 25.5 242 114-419 8-252 (370)
10 PRK05628 coproporphyrinogen II 100.0 1.8E-42 3.9E-47 368.7 26.4 250 114-419 4-257 (375)
11 PRK09058 coproporphyrinogen II 100.0 1.1E-42 2.3E-47 377.9 24.4 246 115-419 64-314 (449)
12 PRK08446 coproporphyrinogen II 100.0 7E-42 1.5E-46 360.8 23.8 236 114-419 2-239 (350)
13 PRK05904 coproporphyrinogen II 100.0 1.7E-41 3.7E-46 357.6 25.0 239 115-420 9-249 (353)
14 PRK05799 coproporphyrinogen II 100.0 4.6E-41 9.9E-46 357.8 24.5 242 114-419 5-248 (374)
15 TIGR00539 hemN_rel putative ox 100.0 6.4E-41 1.4E-45 354.9 24.1 241 115-419 3-245 (360)
16 PRK05660 HemN family oxidoredu 100.0 5.3E-41 1.2E-45 357.4 23.5 243 114-419 8-252 (378)
17 PRK08898 coproporphyrinogen II 100.0 1.2E-40 2.6E-45 356.5 24.8 245 114-419 21-266 (394)
18 PRK08599 coproporphyrinogen II 100.0 4.3E-40 9.4E-45 350.6 23.9 244 115-419 4-249 (377)
19 PRK08208 coproporphyrinogen II 100.0 1.4E-38 2.9E-43 344.3 24.3 241 115-419 42-284 (430)
20 PRK13347 coproporphyrinogen II 100.0 2.7E-37 5.8E-42 336.3 27.1 286 62-419 9-310 (453)
21 TIGR01212 radical SAM protein, 100.0 1.5E-36 3.2E-41 313.9 27.9 206 184-412 81-293 (302)
22 COG1242 Predicted Fe-S oxidore 100.0 5E-36 1.1E-40 294.4 25.0 266 104-412 26-298 (312)
23 TIGR00538 hemN oxygen-independ 100.0 9.6E-36 2.1E-40 324.5 25.2 237 115-407 52-292 (455)
24 PRK09249 coproporphyrinogen II 100.0 2E-35 4.3E-40 321.8 25.0 248 115-419 52-302 (453)
25 PRK08629 coproporphyrinogen II 100.0 5.6E-35 1.2E-39 315.5 22.5 224 115-405 55-282 (433)
26 TIGR01210 conserved hypothetic 100.0 1.2E-26 2.6E-31 241.1 26.2 166 184-373 72-246 (313)
27 TIGR02026 BchE magnesium-proto 99.9 2.9E-23 6.3E-28 228.8 22.6 192 108-352 195-390 (497)
28 TIGR03471 HpnJ hopanoid biosyn 99.9 8.1E-23 1.8E-27 224.1 23.7 193 106-352 197-390 (472)
29 TIGR01579 MiaB-like-C MiaB-lik 99.9 1.7E-22 3.7E-27 218.1 22.1 207 108-372 140-357 (414)
30 PRK14329 (dimethylallyl)adenos 99.9 2.7E-22 6E-27 219.2 23.5 208 107-371 169-392 (467)
31 PRK14334 (dimethylallyl)adenos 99.9 3.8E-22 8.2E-27 216.8 22.2 203 114-372 139-356 (440)
32 PRK14340 (dimethylallyl)adenos 99.9 4.9E-22 1.1E-26 215.9 22.1 208 108-372 151-368 (445)
33 PRK07094 biotin synthase; Prov 99.9 1.3E-21 2.8E-26 204.5 23.4 178 161-375 71-249 (323)
34 PRK14327 (dimethylallyl)adenos 99.9 1.9E-21 4.2E-26 213.4 24.6 182 158-372 239-431 (509)
35 PRK14331 (dimethylallyl)adenos 99.9 9.8E-22 2.1E-26 213.5 21.6 181 158-371 173-363 (437)
36 PRK14332 (dimethylallyl)adenos 99.9 2E-21 4.2E-26 211.3 23.7 208 108-372 156-371 (449)
37 PRK14333 (dimethylallyl)adenos 99.9 5.4E-22 1.2E-26 216.1 19.3 205 116-372 151-374 (448)
38 PRK14330 (dimethylallyl)adenos 99.9 2.5E-21 5.5E-26 210.2 21.9 184 158-372 167-360 (434)
39 PRK14326 (dimethylallyl)adenos 99.9 4.3E-21 9.3E-26 211.3 23.9 207 108-370 159-374 (502)
40 PRK14325 (dimethylallyl)adenos 99.9 3E-21 6.6E-26 210.1 22.5 206 110-372 151-368 (444)
41 PRK14335 (dimethylallyl)adenos 99.9 5.5E-21 1.2E-25 208.4 24.5 186 159-372 180-377 (455)
42 PRK14336 (dimethylallyl)adenos 99.9 4.1E-21 9E-26 207.3 22.9 209 108-372 126-344 (418)
43 TIGR00089 RNA modification enz 99.9 2.3E-21 5E-26 210.2 20.6 207 107-371 140-357 (429)
44 PRK14339 (dimethylallyl)adenos 99.9 4.1E-21 8.8E-26 207.5 22.3 209 107-372 128-349 (420)
45 PRK14338 (dimethylallyl)adenos 99.9 6.7E-21 1.5E-25 208.0 23.7 180 158-366 182-372 (459)
46 PRK14328 (dimethylallyl)adenos 99.9 7.1E-21 1.5E-25 206.9 22.2 206 110-372 151-366 (439)
47 TIGR01574 miaB-methiolase tRNA 99.9 1.4E-20 3E-25 204.6 23.4 182 158-371 172-365 (438)
48 TIGR01125 MiaB-like tRNA modif 99.9 3.6E-20 7.9E-25 200.9 22.3 207 108-371 137-353 (430)
49 smart00729 Elp3 Elongator prot 99.9 1.6E-19 3.4E-24 174.1 23.7 162 181-364 51-214 (216)
50 PRK14337 (dimethylallyl)adenos 99.8 5.1E-20 1.1E-24 200.5 21.9 182 158-372 175-368 (446)
51 TIGR01578 MiaB-like-B MiaB-lik 99.8 1.7E-19 3.8E-24 194.9 21.6 206 107-371 134-350 (420)
52 PRK06256 biotin synthase; Vali 99.8 2.9E-19 6.3E-24 187.8 21.6 180 160-375 91-270 (336)
53 TIGR00433 bioB biotin syntheta 99.8 2.5E-18 5.3E-23 177.4 26.4 130 236-376 113-242 (296)
54 COG0621 MiaB 2-methylthioadeni 99.8 2.3E-18 5.1E-23 184.0 18.9 198 124-372 156-364 (437)
55 PRK14862 rimO ribosomal protei 99.8 6.3E-18 1.4E-22 183.8 22.1 206 107-372 140-365 (440)
56 COG1244 Predicted Fe-S oxidore 99.8 1.9E-16 4.1E-21 159.6 24.5 174 182-375 103-283 (358)
57 PRK09240 thiH thiamine biosynt 99.8 3.2E-17 7E-22 174.4 18.9 218 120-404 82-308 (371)
58 TIGR03551 F420_cofH 7,8-dideme 99.7 5.3E-17 1.2E-21 171.2 19.6 185 161-376 71-271 (343)
59 TIGR02351 thiH thiazole biosyn 99.7 9.1E-17 2E-21 170.8 19.4 195 161-404 104-307 (366)
60 PRK08508 biotin synthase; Prov 99.7 9.8E-16 2.1E-20 157.1 22.1 177 161-375 41-219 (279)
61 PLN02389 biotin synthase 99.7 1.6E-15 3.4E-20 161.3 22.9 130 238-376 170-299 (379)
62 cd01335 Radical_SAM Radical SA 99.7 5.2E-16 1.1E-20 147.4 17.4 140 182-346 45-187 (204)
63 COG0502 BioB Biotin synthase a 99.7 9.7E-16 2.1E-20 158.1 20.5 202 122-376 61-264 (335)
64 TIGR00423 radical SAM domain p 99.7 9E-16 2E-20 159.6 18.9 182 160-374 36-234 (309)
65 TIGR03699 mena_SCO4550 menaqui 99.7 5.3E-16 1.2E-20 163.4 17.2 187 161-375 73-268 (340)
66 PRK15108 biotin synthase; Prov 99.7 3.9E-15 8.4E-20 157.0 22.2 180 160-375 76-256 (345)
67 COG1032 Fe-S oxidoreductase [E 99.7 1.5E-15 3.2E-20 166.0 18.0 114 232-348 284-404 (490)
68 PRK08445 hypothetical protein; 99.7 3.7E-15 8E-20 157.2 20.1 185 161-375 74-273 (348)
69 PRK09613 thiH thiamine biosynt 99.7 6.6E-14 1.4E-18 152.2 28.6 217 115-376 88-311 (469)
70 TIGR03700 mena_SCO4494 putativ 99.6 4.9E-15 1.1E-19 156.8 18.4 182 161-375 80-277 (351)
71 PRK06245 cofG FO synthase subu 99.6 9.2E-15 2E-19 153.8 20.3 192 159-379 40-245 (336)
72 PRK06267 hypothetical protein; 99.6 1.3E-14 2.8E-19 153.5 21.3 173 160-375 63-236 (350)
73 TIGR03550 F420_cofG 7,8-dideme 99.6 1.6E-14 3.4E-19 151.2 18.6 136 235-378 99-240 (322)
74 PF04055 Radical_SAM: Radical 99.6 2.7E-14 5.8E-19 132.0 16.3 135 161-321 29-166 (166)
75 TIGR00510 lipA lipoate synthas 99.6 2.1E-13 4.6E-18 140.7 20.4 168 163-367 94-270 (302)
76 PRK12928 lipoyl synthase; Prov 99.6 1.8E-13 3.9E-18 140.9 19.7 156 161-347 88-253 (290)
77 PRK00955 hypothetical protein; 99.5 5.9E-13 1.3E-17 147.8 19.6 115 235-353 407-532 (620)
78 PRK07360 FO synthase subunit 2 99.5 7E-13 1.5E-17 141.4 19.2 184 161-375 92-292 (371)
79 PRK08444 hypothetical protein; 99.5 1.2E-12 2.5E-17 138.4 18.9 204 120-375 57-276 (353)
80 PRK05481 lipoyl synthase; Prov 99.5 1.7E-12 3.6E-17 133.8 19.6 150 160-339 80-235 (289)
81 PLN02428 lipoic acid synthase 99.4 7.3E-12 1.6E-16 131.1 20.3 128 184-338 150-285 (349)
82 PRK01254 hypothetical protein; 99.4 6.5E-12 1.4E-16 138.9 19.5 112 234-348 485-609 (707)
83 PRK05926 hypothetical protein; 99.4 1.4E-11 3.1E-16 130.8 19.8 206 120-374 76-297 (370)
84 TIGR03822 AblA_like_2 lysine-2 99.4 3.4E-11 7.4E-16 126.0 21.6 164 183-388 139-308 (321)
85 PRK05927 hypothetical protein; 99.4 1.1E-11 2.5E-16 130.8 16.3 215 120-375 53-274 (350)
86 COG1031 Uncharacterized Fe-S o 99.3 4.3E-11 9.3E-16 125.6 18.8 202 106-348 183-414 (560)
87 PRK13361 molybdenum cofactor b 99.3 7.1E-11 1.5E-15 124.1 19.6 156 182-370 62-219 (329)
88 COG1856 Uncharacterized homolo 99.3 2.3E-10 5E-15 110.3 19.0 180 163-379 42-224 (275)
89 PRK09234 fbiC FO synthase; Rev 99.3 9.7E-11 2.1E-15 135.6 19.0 208 121-380 80-311 (843)
90 PRK09234 fbiC FO synthase; Rev 99.2 4.8E-10 1E-14 129.9 20.3 186 160-376 557-758 (843)
91 PRK00164 moaA molybdenum cofac 99.2 9.5E-10 2.1E-14 115.5 20.3 153 182-367 66-220 (331)
92 TIGR02666 moaA molybdenum cofa 99.2 1.4E-09 3E-14 114.5 20.6 154 182-368 60-216 (334)
93 PTZ00413 lipoate synthase; Pro 99.2 2.4E-09 5.2E-14 112.1 19.9 100 234-338 228-333 (398)
94 PLN02951 Molybderin biosynthes 99.1 2.9E-09 6.3E-14 113.7 20.7 168 161-367 91-260 (373)
95 TIGR02668 moaA_archaeal probab 99.1 5.3E-09 1.1E-13 108.5 18.8 131 182-341 57-189 (302)
96 PRK05301 pyrroloquinoline quin 99.1 5.6E-09 1.2E-13 111.7 19.2 129 182-339 63-193 (378)
97 PRK10314 putative acyltransfer 99.1 2.6E-10 5.7E-15 106.7 7.4 87 450-557 48-134 (153)
98 KOG2492 CDK5 activator-binding 99.1 4.4E-09 9.4E-14 109.1 16.1 119 231-352 324-447 (552)
99 PRK10146 aminoalkylphosphonic 99.0 1.1E-09 2.3E-14 100.0 8.6 94 450-563 47-144 (144)
100 KOG4355 Predicted Fe-S oxidore 99.0 5.3E-09 1.1E-13 107.7 14.2 110 235-348 271-388 (547)
101 TIGR02109 PQQ_syn_pqqE coenzym 99.0 2.3E-08 5.1E-13 106.1 19.4 128 182-338 54-183 (358)
102 PTZ00330 acetyltransferase; Pr 99.0 3E-09 6.6E-14 97.3 10.8 88 461-563 60-147 (147)
103 TIGR02493 PFLA pyruvate format 99.0 6.6E-08 1.4E-12 96.5 20.9 151 186-366 71-229 (235)
104 TIGR00238 KamA family protein. 99.0 4.8E-08 1E-12 102.7 20.5 162 183-387 162-330 (331)
105 TIGR01290 nifB nitrogenase cof 99.0 6.5E-08 1.4E-12 105.4 21.5 179 162-375 62-261 (442)
106 PHA00673 acetyltransferase dom 99.0 2.7E-09 5.9E-14 99.4 9.2 95 445-557 50-146 (154)
107 TIGR03820 lys_2_3_AblA lysine- 98.9 1.2E-07 2.7E-12 101.6 22.0 162 183-388 158-326 (417)
108 COG1060 ThiH Thiamine biosynth 98.9 2.7E-08 5.8E-13 105.6 16.6 219 121-378 68-291 (370)
109 PLN02706 glucosamine 6-phospha 98.9 7.7E-09 1.7E-13 95.4 10.9 97 451-563 54-150 (150)
110 PF00583 Acetyltransf_1: Acety 98.9 5.8E-09 1.3E-13 85.8 7.7 77 461-553 4-83 (83)
111 COG2896 MoaA Molybdenum cofact 98.9 2.1E-07 4.5E-12 96.4 20.1 151 182-368 60-214 (322)
112 KOG2900 Biotin synthase [Coenz 98.8 1.4E-08 3.1E-13 99.5 9.7 269 35-376 31-302 (380)
113 PF13673 Acetyltransf_10: Acet 98.8 9.8E-09 2.1E-13 90.0 7.5 79 445-552 39-117 (117)
114 PRK14456 ribosomal RNA large s 98.8 1.3E-06 2.8E-11 93.0 23.7 156 182-371 174-339 (368)
115 PRK14460 ribosomal RNA large s 98.8 2.5E-06 5.4E-11 90.5 24.7 152 182-367 156-315 (354)
116 TIGR03821 AblA_like_1 lysine-2 98.7 3.5E-07 7.5E-12 95.9 17.2 164 183-388 145-314 (321)
117 PRK11145 pflA pyruvate formate 98.7 8.9E-07 1.9E-11 89.1 19.0 153 186-367 76-235 (246)
118 PF13508 Acetyltransf_7: Acety 98.7 7.1E-08 1.5E-12 79.4 8.2 77 450-554 3-79 (79)
119 PRK13762 tRNA-modifying enzyme 98.7 1.1E-06 2.4E-11 92.1 19.0 150 187-373 137-291 (322)
120 COG2100 Predicted Fe-S oxidore 98.7 7.7E-07 1.7E-11 90.6 16.6 172 162-371 146-326 (414)
121 PRK03624 putative acetyltransf 98.6 8E-08 1.7E-12 86.2 8.0 89 450-563 45-137 (140)
122 TIGR03470 HpnH hopanoid biosyn 98.6 1.9E-06 4.1E-11 90.3 18.9 153 183-372 74-228 (318)
123 PRK13745 anaerobic sulfatase-m 98.6 3.1E-06 6.7E-11 91.8 21.1 165 182-371 69-246 (412)
124 PRK14469 ribosomal RNA large s 98.6 8.1E-06 1.8E-10 86.4 23.8 211 101-368 85-309 (343)
125 TIGR02382 wecD_rffC TDP-D-fuco 98.6 1.4E-07 3E-12 91.3 9.2 76 461-557 107-185 (191)
126 TIGR01575 rimI ribosomal-prote 98.6 2.4E-07 5.2E-12 82.2 9.3 82 451-557 32-116 (131)
127 PRK10140 putative acetyltransf 98.6 3.2E-07 6.9E-12 85.0 10.1 87 451-557 52-141 (162)
128 KOG3139 N-acetyltransferase [G 98.6 3.2E-07 6.9E-12 84.9 9.4 96 442-557 47-146 (165)
129 TIGR02495 NrdG2 anaerobic ribo 98.6 5.9E-06 1.3E-10 79.7 18.8 112 182-321 63-179 (191)
130 PF13420 Acetyltransf_4: Acety 98.6 3E-07 6.5E-12 84.9 9.3 86 450-557 50-139 (155)
131 TIGR03278 methan_mark_10 putat 98.5 1.1E-05 2.3E-10 87.0 22.1 184 159-373 53-243 (404)
132 cd02169 Citrate_lyase_ligase C 98.5 3.1E-07 6.8E-12 95.0 10.1 77 452-556 7-83 (297)
133 PRK10975 TDP-fucosamine acetyl 98.5 3E-07 6.6E-12 89.0 9.2 78 461-559 110-190 (194)
134 PRK07922 N-acetylglutamate syn 98.5 2.9E-07 6.2E-12 87.6 8.7 73 462-557 55-127 (169)
135 COG0641 AslB Arylsulfatase reg 98.5 7E-06 1.5E-10 87.7 19.9 180 164-372 40-222 (378)
136 PRK14455 ribosomal RNA large s 98.5 2.1E-05 4.5E-10 83.7 23.4 155 182-369 160-322 (356)
137 PRK14470 ribosomal RNA large s 98.5 1.1E-05 2.4E-10 84.9 21.0 154 181-369 144-305 (336)
138 PRK14457 ribosomal RNA large s 98.5 2E-05 4.3E-10 83.3 22.3 150 182-367 149-313 (345)
139 TIGR00048 radical SAM enzyme, 98.5 2.8E-05 6.2E-10 82.6 23.3 152 181-366 155-315 (355)
140 KOG3397 Acetyltransferases [Ge 98.5 1.6E-07 3.4E-12 87.5 5.4 77 461-557 65-141 (225)
141 COG0320 LipA Lipoate synthase 98.5 3E-06 6.5E-11 84.7 14.6 100 234-338 148-251 (306)
142 PRK14463 ribosomal RNA large s 98.5 3E-05 6.5E-10 82.2 23.2 155 182-369 149-310 (349)
143 TIGR03827 GNAT_ablB putative b 98.5 5.3E-07 1.1E-11 92.0 9.6 85 450-557 158-245 (266)
144 PRK14468 ribosomal RNA large s 98.5 3.3E-05 7.1E-10 81.7 23.3 153 180-366 142-303 (343)
145 PRK14459 ribosomal RNA large s 98.5 3.2E-05 7E-10 82.3 23.1 159 180-369 175-344 (373)
146 PRK09831 putative acyltransfer 98.4 5.1E-07 1.1E-11 83.3 7.4 72 452-557 55-126 (147)
147 PHA01807 hypothetical protein 98.4 8.8E-07 1.9E-11 83.0 9.0 80 450-550 53-136 (153)
148 PF13527 Acetyltransf_9: Acety 98.4 1.2E-06 2.6E-11 78.1 9.2 84 451-554 42-126 (127)
149 PRK07757 acetyltransferase; Pr 98.4 1.6E-06 3.5E-11 80.0 10.2 80 452-557 43-122 (152)
150 TIGR03103 trio_acet_GNAT GNAT- 98.4 1.2E-06 2.5E-11 98.3 10.9 98 449-562 122-222 (547)
151 TIGR02406 ectoine_EctA L-2,4-d 98.4 1.3E-06 2.8E-11 81.9 9.6 85 452-557 41-128 (157)
152 PRK13688 hypothetical protein; 98.4 1.8E-06 3.9E-11 81.2 10.4 91 448-557 43-133 (156)
153 PLN02825 amino-acid N-acetyltr 98.4 1.9E-06 4E-11 95.2 11.4 80 452-556 409-489 (515)
154 PRK14466 ribosomal RNA large s 98.4 0.00012 2.6E-09 77.2 24.1 156 182-371 149-312 (345)
155 PRK15130 spermidine N1-acetylt 98.3 2.1E-06 4.5E-11 82.2 9.4 84 452-557 59-145 (186)
156 PRK12308 bifunctional arginino 98.3 2E-06 4.2E-11 97.9 10.4 83 451-559 504-586 (614)
157 PRK09491 rimI ribosomal-protei 98.3 1.6E-06 3.5E-11 79.5 7.8 73 462-556 49-124 (146)
158 PRK13758 anaerobic sulfatase-m 98.3 5.5E-05 1.2E-09 80.7 20.7 131 182-336 59-193 (370)
159 PRK05279 N-acetylglutamate syn 98.3 2.4E-06 5.1E-11 93.5 10.4 82 452-557 336-417 (441)
160 TIGR03448 mycothiol_MshD mycot 98.3 1.4E-06 3E-11 89.4 8.1 86 452-557 200-288 (292)
161 COG0456 RimI Acetyltransferase 98.3 2.4E-06 5.2E-11 80.4 9.0 78 463-556 72-153 (177)
162 COG2153 ElaA Predicted acyltra 98.3 2E-06 4.4E-11 78.3 7.3 90 448-557 47-136 (155)
163 TIGR01890 N-Ac-Glu-synth amino 98.3 4.3E-06 9.2E-11 91.2 10.5 81 452-557 324-405 (429)
164 COG3153 Predicted acetyltransf 98.2 4.5E-06 9.7E-11 79.3 8.9 85 453-556 46-130 (171)
165 COG1509 KamA Lysine 2,3-aminom 98.2 4.2E-05 9E-10 79.6 16.6 163 183-389 161-331 (369)
166 KOG3396 Glucosamine-phosphate 98.2 1.2E-06 2.7E-11 78.7 4.6 101 445-562 47-149 (150)
167 COG2516 Biotin synthase-relate 98.2 1.4E-05 3E-10 81.7 12.7 121 233-365 117-245 (339)
168 TIGR03585 PseH pseudaminic aci 98.2 6.2E-06 1.3E-10 76.1 9.5 83 452-557 53-138 (156)
169 COG1533 SplB DNA repair photol 98.2 7.1E-05 1.5E-09 77.6 17.9 141 181-342 82-226 (297)
170 PRK10809 ribosomal-protein-S5- 98.2 5.9E-06 1.3E-10 79.7 9.3 89 451-557 75-166 (194)
171 PRK14462 ribosomal RNA large s 98.2 0.00024 5.1E-09 75.4 21.6 149 184-366 164-320 (356)
172 PRK10514 putative acetyltransf 98.2 4.8E-06 1E-10 76.0 7.8 76 452-557 51-126 (145)
173 COG0535 Predicted Fe-S oxidore 98.2 0.0001 2.2E-09 77.1 18.8 130 183-341 68-199 (347)
174 COG2108 Uncharacterized conser 98.2 6.6E-05 1.4E-09 76.9 15.8 132 186-352 84-215 (353)
175 PF13523 Acetyltransf_8: Acety 98.1 9.2E-06 2E-10 75.0 8.8 96 446-558 44-142 (152)
176 TIGR03448 mycothiol_MshD mycot 98.1 9.6E-06 2.1E-10 83.3 9.5 84 451-560 47-131 (292)
177 PRK14467 ribosomal RNA large s 98.1 0.00046 1E-08 73.1 22.3 151 182-365 148-310 (348)
178 PRK14465 ribosomal RNA large s 98.1 0.00043 9.2E-09 73.1 21.8 151 182-367 154-312 (342)
179 KOG2488 Acetyltransferase (GNA 98.1 1E-05 2.2E-10 76.9 8.1 89 448-556 90-181 (202)
180 PRK14453 chloramphenicol/florf 98.1 0.00047 1E-08 73.1 21.6 160 181-369 146-315 (347)
181 TIGR01686 FkbH FkbH-like domai 98.1 7.7E-06 1.7E-10 85.8 8.0 74 461-556 242-320 (320)
182 KOG3216 Diamine acetyltransfer 98.1 1.5E-05 3.3E-10 73.3 8.3 89 453-557 55-146 (163)
183 TIGR00124 cit_ly_ligase [citra 98.0 1.8E-05 3.9E-10 83.2 9.7 77 451-556 32-108 (332)
184 PRK10151 ribosomal-protein-L7/ 98.0 2.4E-05 5.1E-10 74.4 8.8 77 462-557 76-155 (179)
185 PRK10562 putative acetyltransf 98.0 2.6E-05 5.6E-10 71.6 8.1 75 452-557 50-125 (145)
186 PRK01346 hypothetical protein; 97.9 5.5E-05 1.2E-09 81.8 10.7 89 452-558 49-137 (411)
187 PF13302 Acetyltransf_3: Acety 97.9 6.9E-05 1.5E-09 67.6 9.5 84 450-553 56-142 (142)
188 PRK14464 ribosomal RNA large s 97.9 0.00073 1.6E-08 71.3 18.2 155 181-371 141-304 (344)
189 TIGR03279 cyano_FeS_chp putati 97.8 0.0003 6.5E-09 75.8 14.0 118 243-369 125-249 (433)
190 COG0731 Fe-S oxidoreductases [ 97.8 0.0008 1.7E-08 69.2 16.4 123 184-337 84-212 (296)
191 TIGR02494 PFLE_PFLC glycyl-rad 97.8 0.0014 3.1E-08 67.7 18.1 151 186-366 131-288 (295)
192 PRK14454 ribosomal RNA large s 97.8 0.0041 8.9E-08 65.9 21.7 149 185-367 153-309 (342)
193 PRK11194 ribosomal RNA large s 97.8 0.007 1.5E-07 64.8 23.4 152 181-366 157-319 (372)
194 COG1247 Sortase and related ac 97.7 0.00034 7.4E-09 66.4 11.1 90 449-557 51-143 (169)
195 COG4277 Predicted DNA-binding 97.7 0.0011 2.3E-08 67.4 14.3 107 235-347 139-265 (404)
196 COG1246 ArgA N-acetylglutamate 97.6 0.00012 2.5E-09 68.0 6.5 73 462-556 49-122 (153)
197 PF08445 FR47: FR47-like prote 97.5 0.00015 3.3E-09 61.1 4.9 51 501-556 29-81 (86)
198 COG1180 PflA Pyruvate-formate 97.5 0.0055 1.2E-07 62.5 17.0 114 182-322 84-200 (260)
199 KOG3138 Predicted N-acetyltran 97.5 0.00011 2.4E-09 70.7 4.1 92 449-556 54-151 (187)
200 KOG3235 Subunit of the major N 97.3 0.00094 2E-08 61.9 7.6 82 460-556 49-134 (193)
201 cd04301 NAT_SF N-Acyltransfera 97.2 0.0021 4.5E-08 48.1 7.7 57 462-537 8-64 (65)
202 KOG3234 Acetyltransferase, (GN 97.2 0.0009 2E-08 62.0 6.4 88 450-556 40-130 (173)
203 PRK14461 ribosomal RNA large s 97.1 0.12 2.7E-06 55.0 22.3 154 180-366 167-334 (371)
204 COG1670 RimL Acetyltransferase 97.1 0.0032 6.8E-08 58.9 9.3 80 461-557 76-158 (187)
205 PRK10076 pyruvate formate lyas 97.0 0.052 1.1E-06 53.8 17.8 125 186-340 44-170 (213)
206 KOG2672 Lipoate synthase [Coen 96.9 0.011 2.4E-07 59.6 12.2 123 190-338 168-294 (360)
207 COG1625 Fe-S oxidoreductase, r 96.9 0.055 1.2E-06 57.8 17.7 112 246-365 125-237 (414)
208 TIGR03365 Bsubt_queE 7-cyano-7 96.8 0.025 5.4E-07 56.9 13.7 87 182-305 73-160 (238)
209 cd03174 DRE_TIM_metallolyase D 96.8 0.081 1.8E-06 53.4 17.3 121 233-375 67-190 (265)
210 COG3981 Predicted acetyltransf 96.7 0.0064 1.4E-07 57.4 8.0 86 451-556 69-158 (174)
211 COG0820 Predicted Fe-S-cluster 96.4 0.5 1.1E-05 49.9 20.7 141 179-344 150-299 (349)
212 PF14542 Acetyltransf_CG: GCN5 96.4 0.012 2.6E-07 48.8 7.2 64 462-549 8-71 (78)
213 PF13394 Fer4_14: 4Fe-4S singl 96.4 0.0054 1.2E-07 54.3 5.3 45 184-248 51-96 (119)
214 COG0454 WecD Histone acetyltra 96.3 0.0035 7.7E-08 51.3 3.1 43 500-552 88-130 (156)
215 COG3393 Predicted acetyltransf 96.2 0.0086 1.9E-07 60.3 6.2 51 509-560 213-265 (268)
216 KOG4144 Arylalkylamine N-acety 96.1 0.0036 7.8E-08 57.8 2.7 53 500-557 108-161 (190)
217 TIGR03217 4OH_2_O_val_ald 4-hy 95.5 1.4 3.1E-05 46.5 19.7 114 233-378 77-190 (333)
218 COG5014 Predicted Fe-S oxidore 95.0 0.69 1.5E-05 44.0 13.3 122 158-309 72-199 (228)
219 COG2388 Predicted acetyltransf 94.9 0.057 1.2E-06 46.9 5.6 41 509-550 51-91 (99)
220 PRK08195 4-hyroxy-2-oxovalerat 94.9 2.7 5.8E-05 44.6 19.3 114 233-378 78-191 (337)
221 cd07944 DRE_TIM_HOA_like 4-hyd 94.7 1.8 3.9E-05 44.3 17.1 111 233-375 72-182 (266)
222 PF13718 GNAT_acetyltr_2: GNAT 93.7 0.077 1.7E-06 51.7 4.3 50 501-555 98-174 (196)
223 cd07937 DRE_TIM_PC_TC_5S Pyruv 93.7 5.3 0.00011 41.0 18.0 109 235-374 83-192 (275)
224 PF13353 Fer4_12: 4Fe-4S singl 93.2 0.14 2.9E-06 46.4 4.8 29 182-210 53-83 (139)
225 TIGR02090 LEU1_arch isopropylm 92.6 13 0.00027 39.9 19.6 119 233-374 64-184 (363)
226 PRK09282 pyruvate carboxylase 92.6 11 0.00024 43.1 19.9 104 240-374 93-197 (592)
227 COG1313 PflX Uncharacterized F 92.6 1.6 3.6E-05 44.8 11.8 61 239-299 267-332 (335)
228 PF00682 HMGL-like: HMGL-like 92.2 4 8.7E-05 40.5 14.4 123 233-375 56-181 (237)
229 TIGR03849 arch_ComA phosphosul 91.8 4.7 0.0001 40.6 14.0 123 182-335 25-154 (237)
230 cd07943 DRE_TIM_HOA 4-hydroxy- 91.8 16 0.00035 37.1 21.1 111 233-375 75-185 (263)
231 PRK11858 aksA trans-homoaconit 91.4 24 0.00051 38.1 20.1 117 234-373 69-187 (378)
232 TIGR02826 RNR_activ_nrdG3 anae 91.2 1.3 2.7E-05 41.4 8.8 55 182-264 62-117 (147)
233 TIGR01108 oadA oxaloacetate de 90.9 17 0.00036 41.6 19.0 104 240-374 88-192 (582)
234 COG5628 Predicted acetyltransf 90.8 1.3 2.8E-05 39.6 7.8 90 443-554 30-120 (143)
235 cd07939 DRE_TIM_NifV Streptomy 90.5 22 0.00047 36.1 19.9 117 234-374 63-182 (259)
236 PRK14040 oxaloacetate decarbox 90.4 15 0.00033 42.0 18.0 103 240-373 94-197 (593)
237 PF12746 GNAT_acetyltran: GNAT 90.3 0.64 1.4E-05 47.6 6.4 51 509-560 200-250 (265)
238 cd07940 DRE_TIM_IPMS 2-isoprop 90.0 24 0.00053 35.9 20.2 118 233-374 62-186 (268)
239 PLN02746 hydroxymethylglutaryl 89.9 6.8 0.00015 41.7 13.9 110 245-374 123-240 (347)
240 COG1809 (2R)-phospho-3-sulfola 89.8 3.2 7E-05 41.0 10.4 115 181-322 43-163 (258)
241 cd07948 DRE_TIM_HCS Saccharomy 89.6 26 0.00057 35.7 20.1 117 235-375 66-185 (262)
242 cd07938 DRE_TIM_HMGL 3-hydroxy 89.5 9.1 0.0002 39.4 14.2 111 245-374 75-192 (274)
243 TIGR02660 nifV_homocitr homoci 89.4 33 0.00073 36.7 19.4 117 234-374 66-185 (365)
244 cd07941 DRE_TIM_LeuA3 Desulfob 89.4 28 0.0006 35.7 20.0 110 245-374 80-194 (273)
245 KOG4135 Predicted phosphogluco 89.3 1.1 2.3E-05 41.6 6.3 48 509-556 119-169 (185)
246 PRK12330 oxaloacetate decarbox 89.3 23 0.0005 39.6 17.9 106 239-376 93-200 (499)
247 PRK14041 oxaloacetate decarbox 89.2 25 0.00053 39.1 18.1 103 240-374 92-196 (467)
248 PRK07535 methyltetrahydrofolat 89.1 15 0.00032 37.5 15.3 146 160-321 22-180 (261)
249 PRK05692 hydroxymethylglutaryl 89.0 8.8 0.00019 39.7 13.8 111 245-374 81-198 (287)
250 TIGR00262 trpA tryptophan synt 88.9 2.2 4.8E-05 43.4 9.1 114 233-353 13-140 (256)
251 TIGR02491 NrdG anaerobic ribon 88.8 1.3 2.7E-05 41.5 6.8 29 182-210 64-94 (154)
252 KOG2876 Molybdenum cofactor bi 88.7 0.98 2.1E-05 45.8 6.2 103 234-344 91-196 (323)
253 PRK12331 oxaloacetate decarbox 88.5 37 0.00081 37.5 18.9 104 239-374 92-197 (448)
254 PF12568 DUF3749: Acetyltransf 88.4 1.8 3.9E-05 39.3 7.1 83 447-556 35-124 (128)
255 PRK09722 allulose-6-phosphate 88.3 13 0.00028 37.3 13.9 81 234-344 63-144 (229)
256 PRK08005 epimerase; Validated 87.7 8.6 0.00019 38.0 12.1 120 234-405 62-182 (210)
257 PRK15452 putative protease; Pr 87.1 4.1 8.9E-05 44.9 10.4 84 245-335 12-96 (443)
258 PRK08091 ribulose-phosphate 3- 87.0 8.1 0.00017 38.7 11.5 80 234-344 72-154 (228)
259 COG1444 Predicted P-loop ATPas 86.6 0.89 1.9E-05 52.7 5.0 50 501-556 539-590 (758)
260 COG4552 Eis Predicted acetyltr 86.2 0.97 2.1E-05 47.6 4.6 49 507-558 80-128 (389)
261 PRK08745 ribulose-phosphate 3- 85.8 19 0.00042 35.9 13.5 72 246-344 75-146 (223)
262 PRK11121 nrdG anaerobic ribonu 84.8 2.8 6E-05 39.3 6.6 28 183-210 67-96 (154)
263 PRK11613 folP dihydropteroate 83.8 28 0.0006 36.1 14.0 39 283-322 164-205 (282)
264 PRK09389 (R)-citramalate synth 83.6 80 0.0017 35.3 19.9 119 233-374 66-186 (488)
265 TIGR03827 GNAT_ablB putative b 83.6 2 4.3E-05 43.8 5.6 51 513-564 21-82 (266)
266 PRK08883 ribulose-phosphate 3- 83.6 26 0.00055 34.9 13.3 81 234-345 62-143 (220)
267 COG1964 Predicted Fe-S oxidore 82.8 44 0.00096 36.6 15.3 110 183-323 112-227 (475)
268 cd00739 DHPS DHPS subgroup of 82.2 23 0.00049 36.1 12.6 149 160-322 21-192 (257)
269 COG0602 NrdG Organic radical a 82.1 5.1 0.00011 39.6 7.6 24 183-208 73-97 (212)
270 cd07945 DRE_TIM_CMS Leptospira 82.1 9.6 0.00021 39.3 9.9 110 246-374 77-190 (280)
271 PF13480 Acetyltransf_6: Acety 81.9 11 0.00023 33.3 9.2 68 448-540 69-136 (142)
272 PF00834 Ribul_P_3_epim: Ribul 81.8 4.2 9.1E-05 39.9 6.8 81 233-344 60-141 (201)
273 PF02324 Glyco_hydro_70: Glyco 79.1 2 4.4E-05 48.8 4.0 65 246-310 590-679 (809)
274 PRK12344 putative alpha-isopro 78.7 1.2E+02 0.0027 34.2 19.5 109 245-373 87-200 (524)
275 PF02679 ComA: (2R)-phospho-3- 78.3 8.3 0.00018 39.0 7.7 123 182-334 38-166 (244)
276 cd00423 Pterin_binding Pterin 78.3 75 0.0016 32.2 14.9 149 159-321 20-191 (258)
277 COG0826 Collagenase and relate 77.5 14 0.00031 39.3 9.7 84 245-334 15-98 (347)
278 COG0036 Rpe Pentose-5-phosphat 77.3 33 0.00072 34.1 11.4 123 234-405 65-188 (220)
279 PF08902 DUF1848: Domain of un 77.0 62 0.0013 33.2 13.6 224 192-425 8-253 (266)
280 smart00642 Aamy Alpha-amylase 76.8 6.2 0.00013 37.4 6.1 64 246-309 22-97 (166)
281 PRK14057 epimerase; Provisiona 76.6 38 0.00083 34.5 12.0 80 234-344 79-168 (254)
282 TIGR00284 dihydropteroate synt 74.1 52 0.0011 36.9 13.2 131 164-321 166-303 (499)
283 PF08444 Gly_acyl_tr_C: Aralky 73.4 4 8.7E-05 34.8 3.4 47 508-555 30-78 (89)
284 COG3882 FkbH Predicted enzyme 73.1 4.3 9.3E-05 44.6 4.3 48 509-557 498-550 (574)
285 COG3818 Predicted acetyltransf 72.5 8 0.00017 35.3 5.2 59 494-557 85-148 (167)
286 PRK00915 2-isopropylmalate syn 72.5 1.7E+02 0.0037 32.9 20.5 120 233-375 68-193 (513)
287 PF05301 Mec-17: Touch recepto 71.5 13 0.00029 33.3 6.3 21 501-525 54-74 (120)
288 PF00765 Autoind_synth: Autoin 69.2 30 0.00065 33.3 8.9 98 449-555 44-153 (182)
289 TIGR03694 exosort_acyl putativ 69.1 19 0.00041 36.3 7.8 40 514-554 156-195 (241)
290 PF07745 Glyco_hydro_53: Glyco 66.2 14 0.00029 39.3 6.3 55 245-304 26-80 (332)
291 TIGR00620 sporelyase spore pho 65.9 50 0.0011 32.5 9.6 93 233-331 25-119 (199)
292 cd02072 Glm_B12_BD B12 binding 65.4 27 0.00058 31.8 7.2 86 251-348 22-122 (128)
293 PRK13111 trpA tryptophan synth 63.6 38 0.00082 34.6 8.8 95 233-334 15-123 (258)
294 PLN00196 alpha-amylase; Provis 62.8 18 0.00038 39.8 6.6 63 246-308 47-118 (428)
295 PRK05265 pyridoxine 5'-phospha 62.2 22 0.00047 35.8 6.5 63 233-300 127-189 (239)
296 TIGR00973 leuA_bact 2-isopropy 62.0 2.7E+02 0.0058 31.2 17.2 105 251-375 84-190 (494)
297 PRK15447 putative protease; Pr 61.6 46 0.00099 34.7 9.2 50 245-300 17-66 (301)
298 TIGR00559 pdxJ pyridoxine 5'-p 61.5 40 0.00088 33.9 8.2 65 232-300 123-187 (237)
299 COG5016 Pyruvate/oxaloacetate 60.3 2.2E+02 0.0049 31.1 13.8 114 236-380 91-205 (472)
300 TIGR01501 MthylAspMutase methy 59.3 50 0.0011 30.3 7.9 55 250-305 23-89 (134)
301 PF01261 AP_endonuc_2: Xylose 58.5 53 0.0012 30.9 8.5 79 249-337 1-93 (213)
302 cd07947 DRE_TIM_Re_CS Clostrid 58.5 2.3E+02 0.0049 29.3 16.5 65 234-302 68-135 (279)
303 TIGR01303 IMP_DH_rel_1 IMP deh 58.4 1.1E+02 0.0024 34.2 11.9 108 164-302 225-335 (475)
304 TIGR01496 DHPS dihydropteroate 58.1 2.2E+02 0.0047 29.0 14.2 147 161-322 21-190 (257)
305 PLN02361 alpha-amylase 57.7 28 0.0006 37.9 7.0 61 246-306 32-100 (401)
306 PF00128 Alpha-amylase: Alpha 56.7 7.9 0.00017 39.1 2.5 66 247-312 8-82 (316)
307 KOG3111 D-ribulose-5-phosphate 56.5 71 0.0015 31.3 8.6 90 246-350 20-130 (224)
308 CHL00200 trpA tryptophan synth 56.0 90 0.002 32.0 10.0 116 233-355 18-146 (263)
309 PTZ00170 D-ribulose-5-phosphat 55.4 1E+02 0.0022 30.7 10.2 49 246-307 78-126 (228)
310 TIGR00977 LeuA_rel 2-isopropyl 55.4 3.6E+02 0.0077 30.6 20.6 110 246-375 84-198 (526)
311 cd00003 PNPsynthase Pyridoxine 54.8 32 0.00069 34.6 6.2 64 233-300 124-187 (234)
312 cd04724 Tryptophan_synthase_al 52.5 75 0.0016 31.9 8.7 104 240-351 10-127 (242)
313 PF00809 Pterin_bind: Pterin b 52.5 96 0.0021 30.4 9.3 77 245-322 105-189 (210)
314 PRK13209 L-xylulose 5-phosphat 51.6 1.2E+02 0.0026 30.7 10.2 87 245-335 23-119 (283)
315 TIGR00542 hxl6Piso_put hexulos 51.3 66 0.0014 32.6 8.3 55 242-299 15-69 (279)
316 PRK13397 3-deoxy-7-phosphohept 50.8 2.9E+02 0.0063 28.2 13.9 73 235-310 80-167 (250)
317 PRK01060 endonuclease IV; Prov 50.1 2.3E+02 0.0049 28.5 12.0 89 245-337 14-111 (281)
318 PRK03170 dihydrodipicolinate s 50.0 2.8E+02 0.006 28.4 12.7 109 246-380 25-133 (292)
319 PRK09441 cytoplasmic alpha-amy 49.3 32 0.0007 38.1 6.0 63 246-308 25-107 (479)
320 PRK13834 putative autoinducer 48.3 1E+02 0.0022 30.3 8.7 40 514-554 123-162 (207)
321 PRK03906 mannonate dehydratase 47.7 63 0.0014 35.0 7.7 57 246-308 13-77 (385)
322 COG3053 CitC Citrate lyase syn 47.2 33 0.00071 35.7 5.0 51 500-555 63-113 (352)
323 PRK09856 fructoselysine 3-epim 46.7 1.1E+02 0.0023 30.8 8.9 89 244-337 14-112 (275)
324 PF03740 PdxJ: Pyridoxal phosp 46.3 27 0.00058 35.2 4.2 75 232-312 124-200 (239)
325 PF14871 GHL6: Hypothetical gl 46.1 30 0.00066 31.6 4.3 61 246-306 3-68 (132)
326 PF01853 MOZ_SAS: MOZ/SAS fami 45.7 54 0.0012 31.9 6.1 60 450-529 52-112 (188)
327 PF13880 Acetyltransf_13: ESCO 45.7 13 0.00028 30.2 1.6 21 501-525 13-33 (70)
328 PRK12595 bifunctional 3-deoxy- 45.7 2.6E+02 0.0057 30.0 11.9 61 234-297 182-254 (360)
329 COG2513 PrpB PEP phosphonomuta 45.6 3.7E+02 0.0081 28.0 12.5 114 241-374 23-147 (289)
330 PRK13210 putative L-xylulose 5 45.6 1.8E+02 0.004 29.1 10.5 87 246-335 19-114 (284)
331 COG0159 TrpA Tryptophan syntha 45.2 2.1E+02 0.0046 29.4 10.5 124 239-368 26-168 (265)
332 PLN02591 tryptophan synthase 45.2 1.3E+02 0.0028 30.6 9.1 110 235-351 7-129 (250)
333 KOG2696 Histone acetyltransfer 44.6 76 0.0016 34.0 7.4 61 446-524 177-244 (403)
334 PRK12581 oxaloacetate decarbox 44.6 4.9E+02 0.011 29.1 18.0 103 239-372 101-204 (468)
335 TIGR00674 dapA dihydrodipicoli 44.6 3.4E+02 0.0074 27.7 12.4 109 246-380 22-130 (285)
336 smart00876 BATS Biotin and Thi 44.1 30 0.00066 29.4 3.8 37 334-375 2-38 (94)
337 cd00408 DHDPS-like Dihydrodipi 43.4 3.6E+02 0.0079 27.2 12.8 109 246-380 21-129 (281)
338 PRK02261 methylaspartate mutas 43.0 75 0.0016 29.1 6.4 47 251-297 26-84 (137)
339 TIGR03234 OH-pyruv-isom hydrox 42.8 87 0.0019 31.1 7.5 42 245-300 16-57 (254)
340 TIGR02456 treS_nterm trehalose 42.8 77 0.0017 35.8 7.8 68 247-314 32-108 (539)
341 TIGR02402 trehalose_TreZ malto 41.6 51 0.0011 37.3 6.1 60 246-305 114-183 (542)
342 TIGR02403 trehalose_treC alpha 41.5 53 0.0011 37.2 6.2 66 247-312 31-105 (543)
343 cd00408 DHDPS-like Dihydrodipi 41.1 4E+02 0.0086 27.0 13.6 102 182-311 32-139 (281)
344 PRK10785 maltodextrin glucosid 40.7 70 0.0015 36.7 7.1 66 246-311 182-255 (598)
345 cd00954 NAL N-Acetylneuraminic 40.7 4.2E+02 0.0091 27.1 13.2 109 246-380 24-134 (288)
346 PRK05265 pyridoxine 5'-phospha 40.2 1.6E+02 0.0034 29.8 8.5 88 234-336 67-155 (239)
347 COG3589 Uncharacterized conser 40.0 59 0.0013 34.4 5.7 68 233-306 4-73 (360)
348 cd02803 OYE_like_FMN_family Ol 39.7 3.5E+02 0.0076 28.0 11.8 83 250-337 148-250 (327)
349 PRK10933 trehalose-6-phosphate 39.7 55 0.0012 37.1 6.0 66 247-312 37-111 (551)
350 PF02449 Glyco_hydro_42: Beta- 39.6 66 0.0014 34.4 6.4 57 244-302 11-67 (374)
351 TIGR03569 NeuB_NnaB N-acetylne 39.4 3E+02 0.0065 29.2 11.0 86 234-321 89-189 (329)
352 PRK04147 N-acetylneuraminate l 39.0 3.8E+02 0.0082 27.5 11.7 109 246-380 27-136 (293)
353 cd00950 DHDPS Dihydrodipicolin 38.9 4.3E+02 0.0094 26.8 12.9 109 246-380 24-132 (284)
354 TIGR01334 modD putative molybd 38.9 4.1E+02 0.0088 27.5 11.7 77 233-337 189-265 (277)
355 PRK12999 pyruvate carboxylase; 38.8 8.8E+02 0.019 30.3 18.7 102 241-373 625-733 (1146)
356 COG3916 LasI N-acyl-L-homoseri 37.9 3.6E+02 0.0079 26.7 10.4 105 443-555 46-161 (209)
357 TIGR00683 nanA N-acetylneurami 37.8 4.7E+02 0.01 26.9 12.5 102 246-373 24-126 (290)
358 TIGR01163 rpe ribulose-phospha 37.7 1.7E+02 0.0036 28.0 8.4 75 245-337 13-88 (210)
359 PLN03238 probable histone acet 36.7 1.1E+02 0.0023 31.9 6.9 22 509-531 167-188 (290)
360 cd02810 DHOD_DHPD_FMN Dihydroo 36.6 2.1E+02 0.0044 29.2 9.3 83 247-337 115-198 (289)
361 PRK07328 histidinol-phosphatas 36.4 3.1E+02 0.0068 27.7 10.5 47 245-300 210-256 (269)
362 cd06811 PLPDE_III_yhfX_like Ty 36.3 1.6E+02 0.0035 31.6 8.8 78 245-322 85-180 (382)
363 PF05913 DUF871: Bacterial pro 35.6 72 0.0016 34.2 5.8 53 245-303 16-68 (357)
364 TIGR01515 branching_enzym alph 35.5 61 0.0013 37.3 5.6 58 248-305 162-229 (613)
365 PLN03239 histone acetyltransfe 35.2 65 0.0014 34.3 5.2 56 455-531 191-246 (351)
366 PRK07428 nicotinate-nucleotide 35.2 3.6E+02 0.0077 28.1 10.6 76 234-337 198-273 (288)
367 PRK09505 malS alpha-amylase; R 35.2 81 0.0017 36.9 6.5 63 246-308 233-318 (683)
368 PLN02784 alpha-amylase 34.4 90 0.0019 37.3 6.7 62 246-307 524-593 (894)
369 PRK05402 glycogen branching en 34.3 65 0.0014 37.9 5.7 58 248-305 271-338 (726)
370 TIGR02100 glgX_debranch glycog 34.3 71 0.0015 37.3 5.9 58 248-305 189-268 (688)
371 cd06808 PLPDE_III Type III Pyr 34.2 3.2E+02 0.0069 25.9 9.7 79 245-323 45-138 (211)
372 PRK12313 glycogen branching en 33.6 64 0.0014 37.3 5.4 59 248-306 176-244 (633)
373 PRK14042 pyruvate carboxylase 33.6 8E+02 0.017 28.3 18.7 107 237-374 90-197 (596)
374 cd00951 KDGDH 5-dehydro-4-deox 33.5 4.7E+02 0.01 26.8 11.4 105 246-380 24-131 (289)
375 PRK14510 putative bifunctional 33.4 67 0.0015 40.1 5.8 60 246-305 190-270 (1221)
376 TIGR00695 uxuA mannonate dehyd 33.3 1.6E+02 0.0035 32.0 8.0 61 244-306 40-108 (394)
377 PF03470 zf-XS: XS zinc finger 33.3 25 0.00053 25.9 1.2 11 126-136 1-11 (43)
378 PF03740 PdxJ: Pyridoxal phosp 33.2 2.3E+02 0.0049 28.7 8.5 87 234-335 65-152 (239)
379 PLN02447 1,4-alpha-glucan-bran 33.1 72 0.0016 37.6 5.7 60 246-305 254-323 (758)
380 TIGR00559 pdxJ pyridoxine 5'-p 33.0 3E+02 0.0064 27.9 9.2 85 234-336 64-152 (237)
381 PRK03705 glycogen debranching 32.6 81 0.0018 36.7 6.0 59 247-305 183-265 (658)
382 PRK10550 tRNA-dihydrouridine s 32.6 6E+02 0.013 26.6 13.8 146 187-370 107-257 (312)
383 PRK08392 hypothetical protein; 32.4 2.3E+02 0.0051 27.6 8.5 53 235-297 153-205 (215)
384 PRK07329 hypothetical protein; 32.3 3.3E+02 0.0073 27.2 9.8 46 246-299 198-243 (246)
385 TIGR02104 pulA_typeI pullulana 32.1 96 0.0021 35.6 6.5 60 247-306 168-253 (605)
386 PRK12568 glycogen branching en 32.1 92 0.002 36.6 6.3 60 246-305 273-342 (730)
387 TIGR02401 trehalose_TreY malto 31.6 2.5E+02 0.0053 33.7 9.7 76 235-310 5-93 (825)
388 cd00019 AP2Ec AP endonuclease 31.1 3.1E+02 0.0067 27.6 9.5 88 245-336 12-106 (279)
389 TIGR03849 arch_ComA phosphosul 31.0 1.4E+02 0.003 30.2 6.5 97 194-319 9-110 (237)
390 smart00518 AP2Ec AP endonuclea 31.0 2E+02 0.0043 28.9 8.0 87 246-336 13-105 (273)
391 KOG4175 Tryptophan synthase al 30.5 5.3E+02 0.012 25.6 10.1 136 231-373 17-174 (268)
392 cd07937 DRE_TIM_PC_TC_5S Pyruv 30.4 3.4E+02 0.0074 27.7 9.6 86 182-297 163-250 (275)
393 TIGR03019 pepcterm_femAB FemAB 30.4 5.2E+02 0.011 26.8 11.3 51 507-558 229-282 (330)
394 cd03315 MLE_like Muconate lact 30.3 5.7E+02 0.012 25.6 11.4 83 168-277 92-177 (265)
395 PRK08207 coproporphyrinogen II 30.0 8.2E+02 0.018 27.4 17.0 155 233-416 220-400 (488)
396 PLN02417 dihydrodipicolinate s 29.8 6.2E+02 0.013 25.8 12.5 107 246-380 25-131 (280)
397 PRK08883 ribulose-phosphate 3- 29.6 2.3E+02 0.005 28.1 8.0 73 246-337 15-90 (220)
398 PF03668 ATP_bind_2: P-loop AT 29.5 4.5E+02 0.0098 27.3 10.1 137 193-346 31-178 (284)
399 PRK13398 3-deoxy-7-phosphohept 29.4 6.3E+02 0.014 25.8 12.9 61 234-297 91-163 (266)
400 KOG0622 Ornithine decarboxylas 29.3 1.9E+02 0.0041 31.6 7.5 75 246-323 196-278 (448)
401 PRK09997 hydroxypyruvate isome 29.1 2.6E+02 0.0056 27.9 8.4 76 245-335 17-105 (258)
402 COG0119 LeuA Isopropylmalate/h 29.1 7.9E+02 0.017 26.9 13.8 111 245-375 78-190 (409)
403 cd04908 ACT_Bt0572_1 N-termina 29.0 58 0.0013 25.3 2.9 60 235-299 6-65 (66)
404 PRK05581 ribulose-phosphate 3- 28.9 3.2E+02 0.0069 26.4 8.8 76 245-338 18-94 (220)
405 PLN02960 alpha-amylase 28.9 90 0.002 37.4 5.5 60 246-305 420-489 (897)
406 PF06968 BATS: Biotin and Thia 28.8 89 0.0019 26.5 4.2 34 336-375 4-37 (93)
407 cd00952 CHBPH_aldolase Trans-o 28.2 6.9E+02 0.015 25.9 12.4 109 246-380 32-141 (309)
408 TIGR03822 AblA_like_2 lysine-2 28.1 7.1E+02 0.015 26.0 12.9 79 234-322 201-291 (321)
409 TIGR03586 PseI pseudaminic aci 27.9 5.5E+02 0.012 27.2 10.7 84 234-319 90-186 (327)
410 PRK08745 ribulose-phosphate 3- 27.9 2.8E+02 0.0061 27.6 8.2 73 246-337 19-94 (223)
411 TIGR02313 HpaI-NOT-DapA 2,4-di 27.9 6.8E+02 0.015 25.7 12.9 109 246-380 24-133 (294)
412 KOG2900 Biotin synthase [Coenz 27.4 1.2E+02 0.0025 31.0 5.2 50 248-302 125-174 (380)
413 PTZ00064 histone acetyltransfe 27.3 92 0.002 34.7 4.9 22 509-531 396-417 (552)
414 cd00003 PNPsynthase Pyridoxine 27.1 4.3E+02 0.0094 26.7 9.2 86 233-336 63-152 (234)
415 TIGR00289 conserved hypothetic 27.0 4.8E+02 0.01 26.0 9.6 51 245-298 122-174 (222)
416 cd07939 DRE_TIM_NifV Streptomy 26.7 3.8E+02 0.0082 27.0 9.1 11 37-47 23-33 (259)
417 PLN03228 methylthioalkylmalate 26.7 9.6E+02 0.021 27.0 15.6 107 246-374 167-282 (503)
418 PF00150 Cellulase: Cellulase 26.6 54 0.0012 32.7 2.9 62 244-305 22-85 (281)
419 PRK09989 hypothetical protein; 26.6 3.1E+02 0.0067 27.3 8.4 77 246-336 18-106 (258)
420 PF01233 NMT: Myristoyl-CoA:pr 26.5 3.7E+02 0.0081 25.6 8.1 43 494-541 111-153 (162)
421 PRK05286 dihydroorotate dehydr 26.1 5.6E+02 0.012 27.1 10.6 98 233-339 140-249 (344)
422 PRK12331 oxaloacetate decarbox 25.9 5.4E+02 0.012 28.5 10.7 87 182-297 168-255 (448)
423 PLN00104 MYST -like histone ac 25.8 68 0.0015 35.4 3.6 55 456-531 285-339 (450)
424 cd04740 DHOD_1B_like Dihydroor 25.4 7.2E+02 0.016 25.3 11.1 81 247-338 106-189 (296)
425 KOG0471 Alpha-amylase [Carbohy 25.4 1.4E+02 0.003 33.9 6.2 63 246-308 43-114 (545)
426 cd06808 PLPDE_III Type III Pyr 25.3 5.5E+02 0.012 24.2 9.7 64 246-314 90-161 (211)
427 TIGR00542 hxl6Piso_put hexulos 25.3 6.5E+02 0.014 25.2 10.7 78 247-335 98-180 (279)
428 PRK12330 oxaloacetate decarbox 25.0 5.9E+02 0.013 28.7 10.8 68 182-268 169-237 (499)
429 COG0296 GlgB 1,4-alpha-glucan 25.0 1.8E+02 0.0039 33.6 6.9 74 233-306 148-238 (628)
430 cd06819 PLPDE_III_LS_D-TA Type 24.8 4.6E+02 0.01 27.5 9.8 94 245-343 63-171 (358)
431 PF00682 HMGL-like: HMGL-like 24.5 4.4E+02 0.0094 25.9 9.0 30 182-211 151-180 (237)
432 cd02071 MM_CoA_mut_B12_BD meth 24.4 1.1E+02 0.0023 27.2 4.0 27 278-305 61-87 (122)
433 TIGR00238 KamA family protein. 24.3 7.5E+02 0.016 26.0 11.1 83 234-323 225-315 (331)
434 cd07943 DRE_TIM_HOA 4-hydroxy- 24.2 7.4E+02 0.016 24.9 12.8 28 183-210 156-183 (263)
435 TIGR03217 4OH_2_O_val_ald 4-hy 23.8 5.7E+02 0.012 27.0 10.1 28 397-425 285-312 (333)
436 TIGR03128 RuMP_HxlA 3-hexulose 23.5 6.5E+02 0.014 24.0 11.9 68 247-336 67-134 (206)
437 PRK09490 metH B12-dependent me 23.4 1.6E+03 0.034 28.5 14.9 167 160-374 381-557 (1229)
438 COG3010 NanE Putative N-acetyl 23.2 7.1E+02 0.015 24.8 9.6 101 169-289 91-200 (229)
439 PRK14041 oxaloacetate decarbox 23.1 6.1E+02 0.013 28.3 10.4 87 182-297 167-254 (467)
440 PRK09249 coproporphyrinogen II 22.9 8.1E+02 0.018 26.9 11.5 93 309-419 184-286 (453)
441 PF00701 DHDPS: Dihydrodipicol 22.9 8.1E+02 0.018 24.9 12.1 128 161-323 20-153 (289)
442 cd04735 OYE_like_4_FMN Old yel 22.7 4.4E+02 0.0096 27.9 9.1 26 308-336 231-256 (353)
443 cd03681 MM_CoA_mutase_MeaA Coe 22.6 6.6E+02 0.014 27.5 10.3 127 246-379 17-156 (407)
444 PRK14705 glycogen branching en 22.2 1.7E+02 0.0036 36.6 6.3 60 246-305 769-838 (1224)
445 TIGR02455 TreS_stutzeri trehal 22.2 2.5E+02 0.0053 32.7 7.2 68 245-312 76-160 (688)
446 PRK12581 oxaloacetate decarbox 22.2 5.9E+02 0.013 28.5 10.0 90 182-300 177-267 (468)
447 PRK14706 glycogen branching en 22.1 1.7E+02 0.0038 33.9 6.2 60 246-305 171-240 (639)
448 PRK07807 inosine 5-monophospha 21.9 7E+02 0.015 27.9 10.7 105 167-302 230-337 (479)
449 KOG2550 IMP dehydrogenase/GMP 21.9 4.4E+02 0.0095 29.0 8.5 103 169-302 256-361 (503)
450 PRK09282 pyruvate carboxylase 21.9 1.2E+03 0.027 26.7 16.7 87 182-297 168-255 (592)
451 PRK09875 putative hydrolase; P 21.4 6.1E+02 0.013 26.4 9.5 13 283-295 221-233 (292)
452 PLN02389 biotin synthase 21.2 6.8E+02 0.015 27.0 10.1 101 248-372 124-225 (379)
453 TIGR03356 BGL beta-galactosida 20.8 1.9E+02 0.0041 31.7 5.9 91 246-342 57-163 (427)
454 COG2973 TrpR Trp operon repres 20.8 1.7E+02 0.0036 25.5 4.2 49 37-94 50-100 (103)
455 PF13714 PEP_mutase: Phosphoen 20.8 3.6E+02 0.0078 27.1 7.5 69 160-264 152-220 (238)
456 PF00478 IMPDH: IMP dehydrogen 20.8 8.9E+02 0.019 26.0 10.7 105 167-302 111-218 (352)
457 COG3693 XynA Beta-1,4-xylanase 20.7 5.4E+02 0.012 27.3 8.7 58 246-309 207-267 (345)
458 cd07940 DRE_TIM_IPMS 2-isoprop 20.6 5.8E+02 0.013 25.7 9.1 27 18-47 7-33 (268)
459 PRK05588 histidinol-phosphatas 20.0 8.7E+02 0.019 24.2 11.2 46 245-298 198-243 (255)
No 1
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=6.6e-149 Score=1107.72 Aligned_cols=553 Identities=77% Similarity=1.257 Sum_probs=545.0
Q ss_pred cCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhCCCCCCCHHHHHHhCChhhHHHhhh
Q 008466 12 KLPRPGRGGFQAHGLTEEEARVRAIAEIVNSMVELSRKNETVDLNAIKSAACRKYGLARAPKLVEMIAALPETDREALLP 91 (564)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~i~~~~~~~~~~~l~~ 91 (564)
+.+++|.++.+..+.+..+.+.++|++|+.+|++.+..+++.+|+.+|..+++||.++..|+..||++++|+.+++.|++
T Consensus 2 ~~~~kg~~~~~~~~~~~~e~~~~~~~ei~~elie~~~~~k~i~ln~~k~~~~~Ky~L~~~PrlvdiIa~vP~~~k~~Llp 81 (554)
T KOG2535|consen 2 KQKRKGPKELIRPSLSPRELFVLAIGEIVKELIEAHEQNKDIDLNALKTKVARKYGLSAQPRLVDIIAAVPPQYKKSLLP 81 (554)
T ss_pred CCCCCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHhCCccCchHHHHHhhCChHHHHhhhH
Confidence 45678888888888899889999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccCCceeEEeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHH
Q 008466 92 KLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQ 171 (564)
Q Consensus 92 ~l~~kp~rt~sgv~vvavmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~ 171 (564)
.|++||+||+|||+||||||+||.||||.|.++.|.||||||||||.+|+|||||+||+||||++.+|+||+|+..|+.|
T Consensus 82 kLrAKPvRTASGiAVVAVMcKPHRCPHIa~TGNiCVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRaRYdP~~QaR~Rv~Q 161 (554)
T KOG2535|consen 82 KLRAKPVRTASGIAVVAVMCKPHRCPHIAFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYDPYLQARGRVEQ 161 (554)
T ss_pred HhccCccccccceEEEEEecCCCCCCceeccCCEEEECCCCCCccceeecccccCcCcchHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCcEEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHH
Q 008466 172 LKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQ 251 (564)
Q Consensus 172 l~~~g~~~~kve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~ 251 (564)
|+++||++|||+.|+|||||++||.+|.+.|++.+++++.++.+.+++||++++|.|..+|++||||||||+|...+|+.
T Consensus 162 Lk~LGHsvDKVE~i~MGGTFMsLPe~YRd~FI~nLHdALSGhts~~v~EAv~yse~s~tKCiGiTIETRPDyC~~~Hl~~ 241 (554)
T KOG2535|consen 162 LKQLGHSVDKVEFIVMGGTFMSLPEEYRDYFIRNLHDALSGHTSANVEEAVKYSERSLTKCIGITIETRPDYCLKRHLSD 241 (554)
T ss_pred HHHhCCccceeEEEEecceeecChHHHHHHHHHHHHHHhcCCCccCHHHHHHhhhhccceeeeEEeecCcccchhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCe
Q 008466 252 MLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADG 331 (564)
Q Consensus 252 L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~ 331 (564)
|..+||+|++|||||.++++.+..|||||+..+.+++.+++++||+|+.|||+.||+-..|.+++.|.+.|++++|++|+
T Consensus 242 ML~YGCTRlEiGVQS~YEDVARDTNRGHTV~aVce~F~laKDaG~KvV~HMMPdLPNVg~eRDieqF~E~FenP~FR~DG 321 (554)
T KOG2535|consen 242 MLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDAGFKVVAHMMPDLPNVGMERDIEQFKEYFENPAFRPDG 321 (554)
T ss_pred HHhcCCceEEeccchhHHHhhhcccCCccHHHHHHHhhhhhccCceeehhhCCCCCCCchhhhHHHHHHHhcCcCcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhcccc
Q 008466 332 LKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDL 411 (564)
Q Consensus 332 i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~ 411 (564)
+++||+++++||.||++|+.|+|+.++++.++++++.+++++|||+|++|+|||||++|+.+|++|+|+|++|+.+|++.
T Consensus 322 LKiYPTLVIrGTGLyELWKtgrYk~Y~p~~LvdlvArILalVPPWtRvYRvQRDIPMpLVsSGVe~GNlRElAlarMkdl 401 (554)
T KOG2535|consen 322 LKIYPTLVIRGTGLYELWKTGRYKSYSPSALVDLVARILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKDL 401 (554)
T ss_pred ceecceEEEecccHHHHHhcCCcccCCHHHHHHHHHHHHhhCCchhheeeeccCCCccccccccccCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccceeeEEeccccccccCCCcceEEEEEEEeeCCCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeee
Q 008466 412 GLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRE 491 (564)
Q Consensus 412 g~~c~~ir~re~~~~~~~~~~~~~~~e~~~~~y~a~gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~re 491 (564)
|.+||++|+||+|++++|+++.|+++|+.++||.||||||+|||||||++|+|||.||||.++...+++|+.+..++|||
T Consensus 402 g~~CRDvRtREvGiqeiH~kv~PeqvELvRRDY~ANgGWETFlSYEDpkqDILiGLLRLRkcs~~~~~~el~g~~SivRE 481 (554)
T KOG2535|consen 402 GTKCRDVRTREVGIQEIHHKVRPEQVELVRRDYVANGGWETFLSYEDPKQDILIGLLRLRKCSKKTTRPELFGSQSIVRE 481 (554)
T ss_pred CccchhhhhhhccHHHHhhccCHHHhhhhhhhhcccCChheeecccCcchhHHHHHHHHhhcccccccchhcCccchhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred eeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEecCCCcHHHHhhCCCeeeCceEeeecC
Q 008466 492 LHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYLE 564 (564)
Q Consensus 492 lhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~~g~~m~K~l~ 564 (564)
|||||++|||+.+|+..|||||+|+.||++||++|+++||..+|.++|++++++||+|+||+.+||||+|.|.
T Consensus 482 LHVYGs~vpv~~rDp~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~klGY~LdGPYM~K~l~ 554 (554)
T KOG2535|consen 482 LHVYGSVVPVHSRDPTKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKLGYELDGPYMVKMLK 554 (554)
T ss_pred eeecceeeecccCCchhhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHHhhCeeecChhHhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999874
No 2
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=100.00 E-value=3.4e-134 Score=1041.22 Aligned_cols=513 Identities=53% Similarity=0.907 Sum_probs=495.1
Q ss_pred HHHHHHHHHhhccCCCccCHHHHHHHHHHHhCCCCCCCHHHHHHhCChhhHHHhhhHHhcCCCCccCCceeEEeecCCCC
Q 008466 36 IAEIVNSMVELSRKNETVDLNAIKSAACRKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTASGIAVVAVMSKPHR 115 (564)
Q Consensus 36 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~i~~~~~~~~~~~l~~~l~~kp~rt~sgv~vvavmt~p~~ 115 (564)
|++|+.+|++++ ..++. |+++|..+|++|.++..|+++||+.+++++++ |.+.|++||+||+|||+||||||+|++
T Consensus 1 ~~ei~~~~~~g~-~~~~~-l~~~k~~~~r~y~l~~~p~~~dil~~~~~~~~--l~~~lr~KPvRt~sgvaVVaVmt~p~~ 76 (515)
T COG1243 1 CEEIVEELLSGE-IKKKE-LEDLKLEVSRKYGLSKVPRNSDILNAAPPEER--LREILRRKPVRTISGVAVVAVMTSPHG 76 (515)
T ss_pred ChhHHHHHHccc-hhhHH-HHHHHHHHHHHhCcccCCchhHHHHhCChHHH--HHHHHhhcCccccccceEEEEecCCCC
Confidence 689999999988 34444 99999999999999999999999999998877 899999999999999999999999999
Q ss_pred CccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCCC
Q 008466 116 CPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLP 195 (564)
Q Consensus 116 cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l~ 195 (564)
||| ++|.||||||+ + .+||||+|.+|+++|++++.||||.|+..|+.||..+||+.+||+.||||||||++|
T Consensus 77 CPH-----g~CvfCpgg~~--~-~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliimGGTFta~~ 148 (515)
T COG1243 77 CPH-----GRCVFCPGGPD--K-DSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIMGGTFTALS 148 (515)
T ss_pred CCC-----CeEEeCCCCCC--C-CCCcccCCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceEEEEEecccccCCC
Confidence 999 99999999997 3 689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhc
Q 008466 196 ADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDT 275 (564)
Q Consensus 196 ~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i 275 (564)
.+|++||++.++++++++ +..+|||++.||+|..+|+++|||||||+|++++|+.|+++|+|+|++||||++|++|+.+
T Consensus 149 ~~yqe~Fi~~~~~amn~f-~~~le~a~~~ne~~~~r~vgitiETRPD~~~ee~ld~mlkyG~TrVELGVQSiyd~Vl~~~ 227 (515)
T COG1243 149 LEYQEWFLKVALKAMNDF-GYDLEEAQRKNETAELRCVGITIETRPDYIDEEHLDQMLKYGVTRVELGVQSIYDDVLERT 227 (515)
T ss_pred HHHHHHHHHHHHHhhhcc-chhHHHHHHhhcccccceeEEEEecCccccCHHHHHHHHhcCCcEEEEeeeeHHHHHHHHh
Confidence 999999999999999987 7789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCC
Q 008466 276 NRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYR 355 (564)
Q Consensus 276 ~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~ 355 (564)
|||||++++.+|.+++|++||+++.|+|+||||.+.+.++++|+.+|+++.|+||.++|||++|++||+||++|++|.|+
T Consensus 228 ~RGHtvedv~~a~rLlKd~GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly~mwk~G~Yk 307 (515)
T COG1243 228 KRGHTVEDVVEATRLLKDAGFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELYEMWKRGLYK 307 (515)
T ss_pred cCCccHHHHHHHHHHHHhcCcEEEEEecCCCCCCChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCchHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCcccceeeEEeccccccccCCC-
Q 008466 356 NYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKP- 434 (564)
Q Consensus 356 ~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir~re~~~~~~~~~~~~- 434 (564)
|++.||++++++.++.++|+|+|++|||||||++++.+|+.++|+||++.++|++.|++|+||||||+||+..++++-+
T Consensus 308 py~~EEaVeli~~i~~~~p~wvRV~RIqrdIP~~li~~GV~~snlReLv~~rm~~~g~kc~~iR~REvg~~~~~~~~~~~ 387 (515)
T COG1243 308 PYTTEEAVELIVEIYRLEPKWVRVIRIQRDIPAELIVDGVKKSNLRELVENRMREEGIKCRCIRCREVGIVVVKNVVIPP 387 (515)
T ss_pred CCCHHHHHHHHHHHHHhcCCCcEEEEeccCCchHHhhhcccccCHHHHHHHHHHHhCCccceeeeeeccccccccCcCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887765443
Q ss_pred -cceEEEEEEEeeCCCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcC
Q 008466 435 -EEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQG 513 (564)
Q Consensus 435 -~~~e~~~~~y~a~gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~G 513 (564)
+++.+.+++|.|+||+|+|+||+|+++|.++||+|||+|++.+||+|+.+.+|+||||||||++|||++. +..|||+|
T Consensus 388 ~~~~~l~~e~y~a~gg~e~Fls~ed~~~d~lig~lrlR~p~e~~~r~e~~~~~aivrelhvyg~~vpig~~-~~~~QH~G 466 (515)
T COG1243 388 VEQILLKREEYEASGGTEIFLSYEDPKNDILIGFLRLREPSEGAHREEIDDKTAIVRELHVYGSEVPIGKR-EDEWQHRG 466 (515)
T ss_pred ccceeeeeeeeeccCCEEEEeecccchhhhhhheeeecccccchhhhhcccchhhhhhhhccccccccccC-cchhhccc
Confidence 4555699999999999999999999999999999999999899999999779999999999999999996 67899999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEecCCCcHHHHhhCCCeeeCceEeeec
Q 008466 514 YGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYL 563 (564)
Q Consensus 514 iG~~Lm~~aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~~g~~m~K~l 563 (564)
+|++||++||++|+++ |..+|.|+|++||+.||+|+||+.+||||+|.|
T Consensus 467 ~G~~L~~~AE~ia~ee-~~~ki~viSgiG~ReYy~k~GY~~~gpYm~K~l 515 (515)
T COG1243 467 YGRELLEEAERIAREE-GAKKILVISGIGVREYYRKLGYELDGPYMSKRL 515 (515)
T ss_pred HHHHHHHHHHHHHHhh-ccccEEEEecccHHHHHHHhCccccCCcccccC
Confidence 9999999999999997 799999999999999999999999999999987
No 3
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=100.00 E-value=3.2e-116 Score=956.86 Aligned_cols=516 Identities=52% Similarity=0.926 Sum_probs=493.2
Q ss_pred HHHHHHHhhccCCCccCHHHHHHHHHHHhCCCCCCCHHHHHHhCChhhHHHhhhHHhcCCCCccCCceeEEeecCCCCCc
Q 008466 38 EIVNSMVELSRKNETVDLNAIKSAACRKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTASGIAVVAVMSKPHRCP 117 (564)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~i~~~~~~~~~~~l~~~l~~kp~rt~sgv~vvavmt~p~~cp 117 (564)
+|++.|+++. ..++.+++++|..++++|+++..|+++||++++++++++.|+++|++||+||+|||+||||||+|+.||
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kp~rt~sgv~~v~vm~~p~~cp 79 (522)
T TIGR01211 1 EIVDSLLSGK-TRDKEDLEDLKLEVSRKYGLSKVPSNSEILNSAPDEEKKKLEPILRKKPVRTISGVAVVAVMTSPHRCP 79 (522)
T ss_pred CHHHHHhcCC-CCCHHHHHHHHHHHHhhcCCccCCchHHHHhhCCHHHHHHHHHHHhcCCcccccCeEEEEEecCCccCC
Confidence 3788888876 578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCCCHH
Q 008466 118 HIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPAD 197 (564)
Q Consensus 118 hIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l~~~ 197 (564)
| ++|.||||||+| |. +||||+|+||++|||.+++++||+|+..++.++..+||.++|||+||+|||||++|.+
T Consensus 80 h-----~~c~~cp~~~~~-~~-~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GGTft~l~~~ 152 (522)
T TIGR01211 80 H-----GKCLYCPGGPDS-EN-SPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMGGTFPARDLD 152 (522)
T ss_pred C-----CceEeCCCCCCc-CC-CCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEECCCcccCCHH
Confidence 9 999999999998 75 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCch-----hhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHH
Q 008466 198 YRDYFIRNLHDALSGHTSA-----NVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVA 272 (564)
Q Consensus 198 ~l~~ll~~l~~~~~~~~~~-----~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL 272 (564)
|+++|++.+.+++++|.+. .+++++.+||.+..+++++|||||||++++++|+.|+++|++||+|||||+++++|
T Consensus 153 y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~~e~L~~L~~~G~~rVslGVQS~~d~VL 232 (522)
T TIGR01211 153 YQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCREEHIDRMLKLGATRVELGVQTIYNDIL 232 (522)
T ss_pred HHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCCHHHHHHHHHcCCCEEEEECccCCHHHH
Confidence 9999999999999875432 48999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcC
Q 008466 273 RDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTG 352 (564)
Q Consensus 273 ~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G 352 (564)
+.+|||||++++.+|+++++++||++++|||+||||+|.+++.++++.+++++.++||+|++|||.|.+||+|+++|++|
T Consensus 233 ~~inRght~~~v~~Ai~~lr~~G~~v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G 312 (522)
T TIGR01211 233 ERTKRGHTVRDVVEATRLLRDAGLKVVYHIMPGLPGSSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRG 312 (522)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCeEEEEeecCCCCCCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999998666699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCcccceeeEEeccccccc-c
Q 008466 353 RYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHH-Q 431 (564)
Q Consensus 353 ~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir~re~~~~~~~~-~ 431 (564)
.|++++.++++++++.++..+|+|++++|+|+|||+..+.+|.+|.++++++.++|++.|+.|+||||||+|++..|. .
T Consensus 313 ~y~p~t~ee~v~l~~~~~~~lp~~i~v~R~qrdip~~~l~ag~~k~~l~~li~~~l~~~G~~~~~ir~reig~~~~~~~~ 392 (522)
T TIGR01211 313 EYKPYTTEEAVELIVEIKRMMPKWVRIQRIQRDIPAPLIVAGVKKSNLRELVYRRMKEHGITCRCIRCREVGHQMVKPVQ 392 (522)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCcceEEEeeccCCChhhccCccchHHHHHHHHHHHHHCCCeeccccchhcCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876654 2
Q ss_pred CCCcceEEEEEEEeeCCCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhh
Q 008466 432 IKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQH 511 (564)
Q Consensus 432 ~~~~~~e~~~~~y~a~gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~ 511 (564)
.+.+.+++.+++|.+++|++.|++|+|+.++.|||||+|+++++..+|+++.+ +++||||||||++|+|+...+.+|||
T Consensus 393 ~~~~~~~l~~~~y~a~~G~e~F~~y~~~~~~~l~G~lrlr~~~~~~~~~~~~~-~a~IrelhV~G~~~~~~~~~~~~~rg 471 (522)
T TIGR01211 393 PEEENVELIVEEYAASGGTEFFLSYEDPKNDILIGFLRLRFPSEPAHRKEVDA-TALVRELHVYGSEVPIGERGDDEWQH 471 (522)
T ss_pred CCchheeeehhhhHHhCCCeEEEEEEcCCCCeEEEEEEEecCcccccccccCC-CceEEEEEEeeeeccccccCChhHhC
Confidence 33467889999999999999999999999999999999999988899999984 99999999999999999877788999
Q ss_pred cCHHHHHHHHHHHHHHhcCCCcEEEEecCCCcHHHHhhCCCeeeCceEeeec
Q 008466 512 QGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYL 563 (564)
Q Consensus 512 ~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~~g~~m~K~l 563 (564)
+|||++||++||++|+++ |+.+|.|.+|.+|++||+|+||+..|+||+|.|
T Consensus 472 ~GiG~~Ll~~ae~~Ar~~-G~~~i~v~s~~~A~~FY~klGf~~~g~ym~K~l 522 (522)
T TIGR01211 472 RGYGRRLLEEAERIAAEE-GSEKILVISGIGVREYYRKLGYELDGPYMSKRL 522 (522)
T ss_pred cCHHHHHHHHHHHHHHHC-CCCEEEEeeCchHHHHHHHCCCEEEcceeEEeC
Confidence 999999999999999995 999999999999999999999999999999987
No 4
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=1.4e-45 Score=402.20 Aligned_cols=304 Identities=19% Similarity=0.273 Sum_probs=254.0
Q ss_pred HHHHHHHHhhccCCCccCHHHHHHHHHHHhCCCCCCCHHHHHHhCChhhHHHhhhHHhcCCCCccCCceeEEeecCCCCC
Q 008466 37 AEIVNSMVELSRKNETVDLNAIKSAACRKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTASGIAVVAVMSKPHRC 116 (564)
Q Consensus 37 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~i~~~~~~~~~~~l~~~l~~kp~rt~sgv~vvavmt~p~~c 116 (564)
.+|++++|+.+. +.+++.+.+.+.|.++ ++|++|+..++..|++.|.+ .+-++.| +|
T Consensus 111 ~k~~~~~~~~g~-----~~~~~~~~~~~~y~~~--~~k~~l~~~~~~~~~~~~~~----~~~~~~s------------LY 167 (488)
T PRK08207 111 TKILHKLLDEGL-----SKEEIHKELKEEYLIS--EEKAKLLLEIAKRELSFLLY----RDKNEVS------------IY 167 (488)
T ss_pred HHHHHHHHHcCC-----CHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHhhcc----CCCCceE------------EE
Confidence 688999998773 7788899999999999 99999999999999875421 2223332 69
Q ss_pred ccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCC--CCCcEEEE-EEcCCCCC
Q 008466 117 PHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGH--SVDKVEFI-LMGGTFMS 193 (564)
Q Consensus 117 phIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~--~~~kve~I-~~GGTpt~ 193 (564)
+|||||+.+|.|| +|... ...+. ....++|++.+.++++...... ...++.+| |+|||||.
T Consensus 168 ihIPFC~~~C~YC------sf~s~--~~~~~--------~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTPt~ 231 (488)
T PRK08207 168 IGIPFCPTRCLYC------SFPSY--PIKGY--------KGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTPTS 231 (488)
T ss_pred EecCCCCCcCCCC------CCccc--cCCCC--------cchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCccC
Confidence 9999999999999 77521 11221 2346789999988877543211 12368888 68999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe-eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHH
Q 008466 194 LPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET-RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVA 272 (564)
Q Consensus 194 l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt-rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL 272 (564)
++++.+.++++.+.+.++. ...+.++|+|+ |||+++++.|+.|+++|++||+||+||+++++|
T Consensus 232 L~~~~L~~Ll~~i~~~f~~----------------~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vL 295 (488)
T PRK08207 232 LTAEELERLLEEIYENFPD----------------VKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETL 295 (488)
T ss_pred CCHHHHHHHHHHHHHhccc----------------cCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHH
Confidence 9999999999999887732 12456999997 999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCC-cEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHc
Q 008466 273 RDTNRGHTVAAVADCFCLAKDAGF-KVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKT 351 (564)
Q Consensus 273 ~~i~Rght~~~~~~ai~~lr~~G~-~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~ 351 (564)
+.+||+||.+++.++++.++++|| .+++|||+||||||.+++.++++.+. +++|+++++|+|.+.|||+|++++
T Consensus 296 k~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~---~L~pd~isv~~L~i~~gT~l~~~~-- 370 (488)
T PRK08207 296 KAIGRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIE---KLNPESLTVHTLAIKRASRLTENK-- 370 (488)
T ss_pred HHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHH---hcCcCEEEEEeceEcCCChHHHhc--
Confidence 999999999999999999999999 58899999999999999999999997 688999999999999999999876
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcc------------hHHHHHHhhccccCCccccee
Q 008466 352 GRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKG------------NLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 352 G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~------------~~~~~a~~~~~~~g~~c~~ir 419 (564)
+.+..+++++..+|+..+.+. +...|+.+| +.++||+ .|.+|+||.
T Consensus 371 ~~~~~~~~~~~~~m~~~a~~~-----------------l~~~Gy~~Yylyrqk~~~~n~E~~~ya~-----~g~~~~~N~ 428 (488)
T PRK08207 371 EKYKVADREEIEKMMEEAEEW-----------------AKELGYVPYYLYRQKNMLGNLENVGYAK-----PGKESIYNI 428 (488)
T ss_pred CcCCCcCHHHHHHHHHHHHHH-----------------HHHcCCHhhhhhhccccccccceecccC-----CCcchhhHH
Confidence 567788999999998877776 467888888 6677774 588999996
Q ss_pred -eEE
Q 008466 420 -TRE 422 (564)
Q Consensus 420 -~re 422 (564)
.+|
T Consensus 429 ~~w~ 432 (488)
T PRK08207 429 QIME 432 (488)
T ss_pred HHHc
Confidence 454
No 5
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=6.1e-46 Score=396.16 Aligned_cols=246 Identities=17% Similarity=0.192 Sum_probs=217.2
Q ss_pred CCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCC
Q 008466 114 HRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFM 192 (564)
Q Consensus 114 ~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt 192 (564)
++|+|||||..+|.|| ||. ++...+ ...+.|++++.+++++........++++| |||||||
T Consensus 13 ~lYiHiPFC~~~C~yC------~f~----~~~~~~--------~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs 74 (390)
T PRK06582 13 SIYIHWPFCLSKCPYC------DFN----SHVAST--------IDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTPS 74 (390)
T ss_pred EEEEEeCCCcCcCCCC------CCe----eccCCC--------CCHHHHHHHHHHHHHHHHHHccCCceeEEEECCCccc
Confidence 4699999999999999 886 332221 13477999999988764432223468898 5799999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHH
Q 008466 193 SLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVA 272 (564)
Q Consensus 193 ~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL 272 (564)
.++++.++++++.+++.+. .+.+.++|+|+||++++++.|+.|+++|++||||||||+++++|
T Consensus 75 ~l~~~~l~~ll~~i~~~~~-----------------~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L 137 (390)
T PRK06582 75 LMNPVIVEGIINKISNLAI-----------------IDNQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDL 137 (390)
T ss_pred cCCHHHHHHHHHHHHHhCC-----------------CCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHH
Confidence 9999999999999988764 13567999999999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcC
Q 008466 273 RDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTG 352 (564)
Q Consensus 273 ~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G 352 (564)
+.+||+|+.+++.++++.+++++..+++|+|+||||||.+++.++++.+. +++|+||++|+|++.|||+|++++++|
T Consensus 138 ~~lgR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPgqt~e~~~~~l~~~~---~l~p~his~y~L~i~~gT~l~~~~~~g 214 (390)
T PRK06582 138 KKLGRTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQTLKDWQEELKQAM---QLATSHISLYQLTIEKGTPFYKLFKEG 214 (390)
T ss_pred HHcCCCCCHHHHHHHHHHHHHhCCcEEEEeecCCCCCCHHHHHHHHHHHH---hcCCCEEEEecCEEccCChHHHHHhcC
Confidence 99999999999999999999996679999999999999999999999998 688999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCccccee
Q 008466 353 RYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 353 ~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir 419 (564)
.+.++++++..+|+..+.+. |..+|+.+|++++||+ .|.+|+|++
T Consensus 215 ~~~~p~~~~~~~~~~~~~~~-----------------L~~~Gy~~yeis~fa~-----~g~~~~hn~ 259 (390)
T PRK06582 215 NLILPHSDAAAEMYEWTNHY-----------------LESKKYFRYEISNYAK-----IGQECLHNL 259 (390)
T ss_pred CCCCCChHHHHHHHHHHHHH-----------------HHHcCCceeeceeeeC-----CChhhhhHH
Confidence 99999999999999888776 4789999999999996 478899986
No 6
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=4e-45 Score=389.40 Aligned_cols=246 Identities=20% Similarity=0.211 Sum_probs=217.2
Q ss_pred CCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCC
Q 008466 115 RCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMS 193 (564)
Q Consensus 115 ~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~ 193 (564)
+|+|||||.++|.|| ||+ +....+ ...++|++++.+++++........++++| |||||||.
T Consensus 7 lYiHIPFC~~kC~yC------~f~----~~~~~~--------~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~ 68 (380)
T PRK09057 7 LYVHWPFCLAKCPYC------DFN----SHVRHA--------IDQARFAAAFLRELATEAARTGPRTLTSIFFGGGTPSL 68 (380)
T ss_pred EEEEeCCcCCcCCCC------CCc----ccCcCc--------CCHHHHHHHHHHHHHHHHHHcCCCCcCeEEeCCCcccc
Confidence 699999999999999 886 222111 12467999999998865433233568888 57999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHH
Q 008466 194 LPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVAR 273 (564)
Q Consensus 194 l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~ 273 (564)
+|+++++++++.|++.++. ...+++|+|++|++++.+.|+.|+++|++||||||||++|++|+
T Consensus 69 l~~~~L~~ll~~i~~~f~~-----------------~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~ 131 (380)
T PRK09057 69 MQPETVAALLDAIARLWPV-----------------ADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLR 131 (380)
T ss_pred CCHHHHHHHHHHHHHhCCC-----------------CCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 9999999999999998761 34579999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCC
Q 008466 274 DTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGR 353 (564)
Q Consensus 274 ~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~ 353 (564)
.+||+|+.+++.+++++++++++.+++|||+||||||.+++.++++.++ +++|++|++|++++.|||+|++++++|.
T Consensus 132 ~l~R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPgqt~~~~~~~l~~~~---~l~p~~is~y~L~~~~gT~l~~~~~~g~ 208 (380)
T PRK09057 132 FLGRLHSVAEALAAIDLAREIFPRVSFDLIYARPGQTLAAWRAELKEAL---SLAADHLSLYQLTIEEGTAFYGLHAAGK 208 (380)
T ss_pred HcCCCCCHHHHHHHHHHHHHhCccEEEEeecCCCCCCHHHHHHHHHHHH---hcCCCeEEeecceecCCChHHHHHhcCC
Confidence 9999999999999999999997789999999999999999999999998 5789999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCcccceee
Q 008466 354 YRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRT 420 (564)
Q Consensus 354 ~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir~ 420 (564)
+..+++++..+++..+... +..+|+.+|++++|++ .|..|+|+..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~-----------------L~~~G~~~ye~s~~a~-----~g~~~~hn~~ 253 (380)
T PRK09057 209 LILPDEDLAADLYELTQEI-----------------TAAAGLPAYEISNHAR-----PGAESRHNLT 253 (380)
T ss_pred CCCCChHHHHHHHHHHHHH-----------------HHHcCCchhhhHHHcC-----CCchhhhHHH
Confidence 9999999999999888776 4678999999999995 5888999863
No 7
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=1.5e-44 Score=387.14 Aligned_cols=251 Identities=20% Similarity=0.271 Sum_probs=217.1
Q ss_pred CCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCC
Q 008466 114 HRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFM 192 (564)
Q Consensus 114 ~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt 192 (564)
++|+|||||+.+|.|| +|+.+. .+.... .+ .....++|++.+.++++.... ....+++| |+|||||
T Consensus 12 ~lYiHiPFC~~~C~YC------~f~~~~---~~~~~~-~~-~~~~~~~Y~~~L~~Ei~~~~~--~~~~i~~iy~GGGTps 78 (400)
T PRK07379 12 SAYIHIPFCRRRCFYC------DFPISV---VGDRTR-GG-TSGLIEEYVEVLCQEIAITPS--FGQPLQTVFFGGGTPS 78 (400)
T ss_pred EEEEEeccccCcCCCC------CCcccc---cccccc-cc-ccchHHHHHHHHHHHHHHhhc--cCCceeEEEECCCccc
Confidence 4799999999999999 886221 111000 00 012457799999999876432 22458888 5789999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHH
Q 008466 193 SLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVA 272 (564)
Q Consensus 193 ~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL 272 (564)
.++++++.++++.|.+.++. ....++|+|++|++++++.|+.|+++|++||||||||+++++|
T Consensus 79 ~l~~~~l~~ll~~i~~~~~~-----------------~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L 141 (400)
T PRK07379 79 LLSVEQLERILTTLDQRFGI-----------------APDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELL 141 (400)
T ss_pred cCCHHHHHHHHHHHHHhCCC-----------------CCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHH
Confidence 99999999999999987752 2447999999999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHc
Q 008466 273 RDTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKT 351 (564)
Q Consensus 273 ~~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~ 351 (564)
+.+||+||.+++.++++.++++||+ +++|||+||||||.+++.++++.+. +++|++|++|++.+.|||+|++++++
T Consensus 142 ~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~---~l~p~~is~y~L~~~pgT~l~~~~~~ 218 (400)
T PRK07379 142 ALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLEAAI---ALNPTHLSCYDLVLEPGTAFGKQYQP 218 (400)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHH---cCCCCEEEEecceecCCchhHHHhhc
Confidence 9999999999999999999999998 7789999999999999999999998 68899999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCccccee
Q 008466 352 GRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 352 G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir 419 (564)
|.+.++++++..+|+..+.+. |..+|+.+|+++|||+ .|.+|+|+.
T Consensus 219 g~~~~~~~~~~~~~~~~~~~~-----------------L~~~Gy~~yeisnfa~-----~g~~~~hn~ 264 (400)
T PRK07379 219 GKAPLPSDETTAAMYRLAQEI-----------------LTQAGYEHYEISNYAK-----PGYQCRHNR 264 (400)
T ss_pred CCCCCCCHHHHHHHHHHHHHH-----------------HHHcCCceeeeeheEC-----CChHHHHHH
Confidence 999999999999999888776 4789999999999996 478899986
No 8
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=100.00 E-value=1.2e-43 Score=380.29 Aligned_cols=252 Identities=21% Similarity=0.292 Sum_probs=222.7
Q ss_pred CCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCC-CcEEEE-EEcCCC
Q 008466 114 HRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSV-DKVEFI-LMGGTF 191 (564)
Q Consensus 114 ~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~-~kve~I-~~GGTp 191 (564)
++|+|||||..+|.|| ||+ ++.... ....+.|.+++.+++.....-... ..|.+| ||||||
T Consensus 36 slYiHiPFC~~~C~YC------~fn----~~~~~~-------~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTP 98 (416)
T COG0635 36 SLYIHIPFCVSKCPYC------DFN----SHVTKR-------GQPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTP 98 (416)
T ss_pred EEEEEcccccccCCCC------CCe----eeccCC-------CChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCcc
Confidence 3699999999999999 886 322221 025788999999999866543322 469999 589999
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHH
Q 008466 192 MSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDV 271 (564)
Q Consensus 192 t~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~v 271 (564)
|.|+++.++++++.|.+.++ . ...++|||+|++|++++.+.++.|+++|+||||+||||+++++
T Consensus 99 slL~~~~l~~ll~~l~~~~~-~---------------~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~ 162 (416)
T COG0635 99 SLLSPEQLERLLKALRELFN-D---------------LDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEV 162 (416)
T ss_pred ccCCHHHHHHHHHHHHHhcc-c---------------CCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCHHH
Confidence 99999999999999999885 1 2456899999999999999999999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHH
Q 008466 272 ARDTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWK 350 (564)
Q Consensus 272 L~~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~ 350 (564)
|+.+||.|+.+++.+++..+++.||. +++|||+|||+||.+++.++++.++ +++||||++|.|++.|+|++++...
T Consensus 163 lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~QT~~~~~~~l~~a~---~l~pdhis~y~L~~~p~t~~~~~~~ 239 (416)
T COG0635 163 LKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPGQTLESLKEDLEQAL---ELGPDHLSLYSLAIEPGTKFAQRKI 239 (416)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHH---hCCCCEEEEeeeecCCCchhhhhcc
Confidence 99999999999999999999999998 7789999999999999999999998 6889999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCccccee-eEEec
Q 008466 351 TGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR-TREAG 424 (564)
Q Consensus 351 ~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir-~re~~ 424 (564)
+|. ..++.++.++++..+.+. +..+|+.+|+++|||+ .|.+|+||. .++.+
T Consensus 240 ~~~-~lP~~d~~~~~~~~~~e~-----------------L~~~Gy~~yeisnfa~-----~~~e~~hNl~yw~~~ 291 (416)
T COG0635 240 KGK-ALPDEDEKADMYELVEEL-----------------LEKAGYRQYEISNFAK-----PGGECRHNLQYWETK 291 (416)
T ss_pred cCC-CCcChHHHHHHHHHHHHH-----------------HHHCCCcEEeechhcC-----cchHHHhhhccccCC
Confidence 999 788999999999888876 5889999999999997 789999997 44444
No 9
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=6.1e-43 Score=371.30 Aligned_cols=242 Identities=17% Similarity=0.217 Sum_probs=208.2
Q ss_pred CCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHH-HHHHHcCCCCCcEEEE-EEcCCC
Q 008466 114 HRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRI-DQLKRLGHSVDKVEFI-LMGGTF 191 (564)
Q Consensus 114 ~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~-~~l~~~g~~~~kve~I-~~GGTp 191 (564)
++|+|||||..+|.|| +|.. +...+ ...+.|.+.+.++ +...........+++| ||||||
T Consensus 8 ~lYiHIPFC~~~C~yC------~f~~----~~~~~--------~~~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GGGTP 69 (370)
T PRK06294 8 ALYIHIPFCTKKCHYC------SFYT----IPYKE--------ESVSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGGGTP 69 (370)
T ss_pred EEEEEeCCccCcCCCC------cCcc----cCCCc--------cCHHHHHHHHHHHHHHHhhhhccCCceeEEEECCCcc
Confidence 3699999999999999 8862 21111 2356799998887 4433211123458888 579999
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHH
Q 008466 192 MSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDV 271 (564)
Q Consensus 192 t~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~v 271 (564)
|.+|++.+.++++.|.+. .+.++|+|++|++++++.++.|+++|++||||||||+++++
T Consensus 70 s~l~~~~l~~ll~~i~~~---------------------~~~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~ 128 (370)
T PRK06294 70 SLVPPALIQDILKTLEAP---------------------HATEITLEANPENLSESYIRALALTGINRISIGVQTFDDPL 128 (370)
T ss_pred ccCCHHHHHHHHHHHHhC---------------------CCCeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHH
Confidence 999999999999988642 23689999999999999999999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHH
Q 008466 272 ARDTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWK 350 (564)
Q Consensus 272 L~~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~ 350 (564)
|+.+||+|+.+++.++++.++++||. +++|||+|+||||.+++.++++.++ +++|++|++|++++.|||++++..+
T Consensus 129 L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt~~~~~~~l~~~~---~l~~~~is~y~l~~~~gT~l~~~~~ 205 (370)
T PRK06294 129 LKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPTQSLSDFIVDLHQAI---TLPITHISLYNLTIDPHTSFYKHRK 205 (370)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHH---ccCCCeEEEeeeEecCCChHHHHHh
Confidence 99999999999999999999999997 7899999999999999999999998 6889999999999999999999988
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCccccee
Q 008466 351 TGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 351 ~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir 419 (564)
++...++++++..+|+..+.+. +..+|+.+|++++||+ .|.+|+|+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~-----------------L~~~Gy~~yeis~fa~-----~~~~~~hN~ 252 (370)
T PRK06294 206 RLLPSIADEEILAEMSLAAEEL-----------------LTSQGFTRYELASYAK-----PQAQSKHNT 252 (370)
T ss_pred cCCCCCcCHHHHHHHHHHHHHH-----------------HHHcCCCeeeeeeeeC-----CCchhhhhh
Confidence 8887778889989998877775 4789999999999996 467788875
No 10
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=100.00 E-value=1.8e-42 Score=368.69 Aligned_cols=250 Identities=22% Similarity=0.235 Sum_probs=215.7
Q ss_pred CCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCC--CCCcEEEE-EEcCC
Q 008466 114 HRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGH--SVDKVEFI-LMGGT 190 (564)
Q Consensus 114 ~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~--~~~kve~I-~~GGT 190 (564)
++|+|||||+.+|.|| +|+ +++..+. + .....++|++.+.+++++....+ ....+++| |||||
T Consensus 4 ~lYiHiPFC~~~C~yC------~f~----~~~~~~~---~-~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGT 69 (375)
T PRK05628 4 GVYVHVPFCATRCGYC------DFN----TYTAAEL---G-GGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGT 69 (375)
T ss_pred EEEEEeCCcCCcCCCC------CCC----ccccccc---c-cccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCc
Confidence 3699999999999999 885 2322210 0 00235789999999887544222 23458888 57999
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHH
Q 008466 191 FMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYED 270 (564)
Q Consensus 191 pt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~ 270 (564)
||.++++.+.++++.+.+.++ ....+++|+|++|++++++.++.|+++||+||+|||||++++
T Consensus 70 Ps~l~~~~l~~ll~~i~~~~~-----------------~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~ 132 (375)
T PRK05628 70 PSLLGAEGLARVLDAVRDTFG-----------------LAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPH 132 (375)
T ss_pred cccCCHHHHHHHHHHHHHhCC-----------------CCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHH
Confidence 999999999999999988765 124568999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHH
Q 008466 271 VARDTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELW 349 (564)
Q Consensus 271 vL~~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~ 349 (564)
+|+.+||+|+.+++.++++.++++||+ +++|||+|+||||.+++.++++.+. +++|+++++|++.+.|||++++.+
T Consensus 133 ~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~tl~~~~---~l~~~~i~~y~l~~~~gT~l~~~~ 209 (375)
T PRK05628 133 VLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWRASLDAAL---EAGVDHVSAYALIVEDGTALARRV 209 (375)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHHHHHHHHH---hcCCCEEEeeeeecCCCChHHHHh
Confidence 999999999999999999999999999 8899999999999999999999997 688999999999999999999999
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCccccee
Q 008466 350 KTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 350 ~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir 419 (564)
++|.+..+++++..+++..+.+. +..+|+.+|++++||+ .|.+|+|+.
T Consensus 210 ~~g~~~~~~~~~~~~~~~~~~~~-----------------l~~~G~~~ye~s~fa~-----~~~~~~hn~ 257 (375)
T PRK05628 210 RRGELPAPDDDVLADRYELADAR-----------------LSAAGFDWYEVSNWAR-----PGGECRHNL 257 (375)
T ss_pred hcCCCCCCChHHHHHHHHHHHHH-----------------HHHcCCCeeeeccccC-----CCcccccch
Confidence 99999988888888888776665 4788999999999996 577899986
No 11
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=1.1e-42 Score=377.87 Aligned_cols=246 Identities=20% Similarity=0.166 Sum_probs=214.3
Q ss_pred CCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHc--CCCCCcEEEE-EEcCCC
Q 008466 115 RCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRL--GHSVDKVEFI-LMGGTF 191 (564)
Q Consensus 115 ~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~--g~~~~kve~I-~~GGTp 191 (564)
+|+|||||+.+|.|| +|+. .... ....+.|.+.+.++++.... .....++++| ||||||
T Consensus 64 lYiHIPFC~~~C~yC------~f~~----~~~~--------~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGTP 125 (449)
T PRK09058 64 LYIHIPFCRTHCTFC------GFFQ----NAWN--------PEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTP 125 (449)
T ss_pred EEEEeCCcCCcCCCC------CCcC----cCCc--------hhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCcc
Confidence 699999999999999 8851 1111 12357799999999886542 1123468988 589999
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHH
Q 008466 192 MSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDV 271 (564)
Q Consensus 192 t~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~v 271 (564)
|.|+++++.++++.|++.++. ..+++||+|+||++++++.++.|+++|||||||||||+++++
T Consensus 126 s~L~~~~l~~ll~~i~~~~~l-----------------~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~v 188 (449)
T PRK09058 126 TALSAEDLARLITALREYLPL-----------------APDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQV 188 (449)
T ss_pred ccCCHHHHHHHHHHHHHhCCC-----------------CCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHH
Confidence 999999999999999988761 345799999999999999999999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCC-cEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHH
Q 008466 272 ARDTNRGHTVAAVADCFCLAKDAGF-KVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWK 350 (564)
Q Consensus 272 L~~i~Rght~~~~~~ai~~lr~~G~-~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~ 350 (564)
|+.+||+|+.+++.++++.++++|| .+++|||+||||||.+++.++++.+. +++|++|++|+|.+.|||+|+++++
T Consensus 189 Lk~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgqT~e~~~~~l~~~~---~l~~~~is~y~L~~~pgT~l~~~~~ 265 (449)
T PRK09058 189 RRRAGRKDDREEVLARLEELVARDRAAVVCDLIFGLPGQTPEIWQQDLAIVR---DLGLDGVDLYALNLLPGTPLAKAVE 265 (449)
T ss_pred HHHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCCCHHHHHHHHHHHH---hcCCCEEEEeccccCCCCHHHHHHH
Confidence 9999999999999999999999996 58899999999999999999999998 6889999999999999999999999
Q ss_pred cCCCCCC-CHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCccccee
Q 008466 351 TGRYRNY-PPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 351 ~G~~~~~-~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir 419 (564)
+|.+.++ ++++.++|+..+.+. |..+|+.+|++++||++.- ..|+|+.
T Consensus 266 ~g~l~~~~~~~~~~~my~~~~~~-----------------L~~~Gy~~yeis~far~~~----~~~~~n~ 314 (449)
T PRK09058 266 KGKLPPPATPAERADMYAYGVEF-----------------LAKAGWRQLSNSHWARTTR----ERNLYNL 314 (449)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHH-----------------HHHCCCeEEeeeeeecCCc----cccHHHH
Confidence 9999877 899999999888876 4789999999999997521 2477775
No 12
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=7e-42 Score=360.76 Aligned_cols=236 Identities=22% Similarity=0.275 Sum_probs=198.1
Q ss_pred CCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCC
Q 008466 114 HRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFM 192 (564)
Q Consensus 114 ~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt 192 (564)
++|+|||||+.+|.|| +|. ++... ....+.|.+.+.++++.........++++| |+||||+
T Consensus 2 ~lYiHiPFC~~~C~yC------~f~----~~~~~--------~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs 63 (350)
T PRK08446 2 LLYIHIPFCESKCGYC------AFN----SYENK--------HDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTPS 63 (350)
T ss_pred eEEEEeCCccCcCCCC------CCc----CcCCC--------cccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCccc
Confidence 3699999999999999 885 22111 123467999998887743211123458888 5789999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHH
Q 008466 193 SLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVA 272 (564)
Q Consensus 193 ~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL 272 (564)
.++++++.++++.|.+.+. ...++|+|++|++++++.++.|+++|++||||||||+++++|
T Consensus 64 ~l~~~~l~~ll~~i~~~~~-------------------~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L 124 (350)
T PRK08446 64 TVSAKFYEPIFEIISPYLS-------------------KDCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKL 124 (350)
T ss_pred cCCHHHHHHHHHHHHHhcC-------------------CCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 9999999999999987632 346999999999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHc
Q 008466 273 RDTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKT 351 (564)
Q Consensus 273 ~~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~ 351 (564)
+.+||+|+.+++.++++.++++||. +++|||+|+||||.+++.++++.+. +++|++|++|++++.|||++++...+
T Consensus 125 ~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~---~l~~~~is~y~L~~~~gT~l~~~~~~ 201 (350)
T PRK08446 125 KFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAK---ELPINHLSAYSLTIEENTPFFEKNHK 201 (350)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHH---hcCCCEEEeccceecCCChhHHhhhc
Confidence 9999999999999999999999997 6789999999999999999999998 68899999999999999999998776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCccccee
Q 008466 352 GRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 352 G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir 419 (564)
+ +++++ ++..+.+. +..+|+.+|++++||+ |.+|+|+.
T Consensus 202 ~----~~~~~---~~~~~~~~-----------------l~~~Gy~~yeis~fa~------~~~~~hn~ 239 (350)
T PRK08446 202 K----KDDEN---LAKFFIEQ-----------------LEELGFKQYEISNFGK------NYQCKHNL 239 (350)
T ss_pred C----CCHHH---HHHHHHHH-----------------HHHCCCcEEEeehhhC------cchhhhHH
Confidence 5 34443 44433443 4678999999999995 78899986
No 13
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=1.7e-41 Score=357.57 Aligned_cols=239 Identities=16% Similarity=0.241 Sum_probs=201.0
Q ss_pred CCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCC
Q 008466 115 RCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMS 193 (564)
Q Consensus 115 ~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~ 193 (564)
+|+|||||+.+|.|| +|. ++.+..+ .....+.|++.+.+++... + ..++++| ||||||+.
T Consensus 9 lYiHiPFC~~kC~yC------~f~----~~~~~~~-----~~~~~~~~~~~l~~ei~~~--~--~~~~~tiy~GGGTPs~ 69 (353)
T PRK05904 9 LYIHIPFCQYICTFC------DFK----RILKTPQ-----TKKIFKDFLKNIKMHIKNF--K--IKQFKTIYLGGGTPNC 69 (353)
T ss_pred EEEEeCCccCcCCCC------CCe----eccCCcc-----cHHHHHHHHHHHHHHHHHh--c--CCCeEEEEECCCcccc
Confidence 699999999999999 886 2222111 0123455666666554322 1 2458888 58999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHH
Q 008466 194 LPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVAR 273 (564)
Q Consensus 194 l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~ 273 (564)
|+++.++++++.+++.+. .+.+||+|++|+.++++.++.|+++|++||+|||||+++++|+
T Consensus 70 L~~~~l~~ll~~i~~~~~-------------------~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~ 130 (353)
T PRK05904 70 LNDQLLDILLSTIKPYVD-------------------NNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILK 130 (353)
T ss_pred CCHHHHHHHHHHHHHhcC-------------------CCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 999999999999987653 3468999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcC
Q 008466 274 DTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTG 352 (564)
Q Consensus 274 ~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G 352 (564)
.|||+|+.+++.++++.++++||. +++|||+|+||||.+++.++++.+. +++|+++++|++.+.|||+++++.
T Consensus 131 ~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~---~l~p~~is~y~L~~~~gT~l~~~~--- 204 (353)
T PRK05904 131 QLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNFIL---KHKINHISFYSLEIKEGSILKKYH--- 204 (353)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHHHHHHH---hcCCCEEEEEeeEecCCChHhhcC---
Confidence 999999999999999999999997 8899999999999999999999987 688999999999999999998752
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCcccceee
Q 008466 353 RYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRT 420 (564)
Q Consensus 353 ~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir~ 420 (564)
..+++++..+++..+... +...|+.+|+++|||+. .|.+|+|++.
T Consensus 205 --~~~~~~~~~~~~~~~~~~-----------------L~~~Gy~~yeisnfa~~----~~~~~~hn~~ 249 (353)
T PRK05904 205 --YTIDEDKEAEQLNYIKAK-----------------FNKLNYKRYEVSNWTNN----FKYISKHNLA 249 (353)
T ss_pred --CCCChHHHHHHHHHHHHH-----------------HHHcCCcEEechhhcCC----CCccccchHh
Confidence 136778888888777665 47899999999999962 5889999973
No 14
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=4.6e-41 Score=357.78 Aligned_cols=242 Identities=24% Similarity=0.390 Sum_probs=209.2
Q ss_pred CCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCC
Q 008466 114 HRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFM 192 (564)
Q Consensus 114 ~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt 192 (564)
++|+|||||+.+|.|| +|. ++.+.. ...++|.+.+.++++... ....+++| |+||||+
T Consensus 5 ~lYiHiPfC~~~C~yC------~~~----~~~~~~--------~~~~~y~~~l~~Ei~~~~---~~~~~~~i~~gGGtps 63 (374)
T PRK05799 5 SLYIHIPFCKQKCLYC------DFP----SYSGKE--------DLMMEYIKALSKEIRNST---KNKKIKSIFIGGGTPT 63 (374)
T ss_pred EEEEEeCCccCCCCCC------CCC----cccCCc--------chHHHHHHHHHHHHHhhc---CCCceeEEEECCCccc
Confidence 4699999999999999 775 222221 234668888888875321 12348888 5799999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHH
Q 008466 193 SLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVA 272 (564)
Q Consensus 193 ~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL 272 (564)
.++++.++.+++.+.. +. ....+++|+|++|++++++.++.|+++|++||+|||||+++++|
T Consensus 64 ~l~~~~l~~L~~~i~~-~~-----------------~~~~~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L 125 (374)
T PRK05799 64 YLSLEALEILKETIKK-LN-----------------KKEDLEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLL 125 (374)
T ss_pred CCCHHHHHHHHHHHHh-CC-----------------CCCCCEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHH
Confidence 9999999988888754 43 12457999999999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHc
Q 008466 273 RDTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKT 351 (564)
Q Consensus 273 ~~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~ 351 (564)
+.+||+|+.+++.++++.++++||+ +++|+|+|+||||.+++.++++.+. +++|++|++|++.+.|||++++++++
T Consensus 126 ~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~e~~~~~l~~~~---~l~~~~is~y~l~~~pgT~l~~~~~~ 202 (374)
T PRK05799 126 KYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQTLEDWKETLEKVV---ELNPEHISCYSLIIEEGTPFYNLYEN 202 (374)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHH---hcCCCEEEEeccEecCCCHHHHHHhc
Confidence 9999999999999999999999997 7899999999999999999999997 58899999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCccccee
Q 008466 352 GRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 352 G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir 419 (564)
|.+.+++.++..+++..+.+. +..+|+.+|++++||+ .|.+|+|+.
T Consensus 203 g~~~~~~~~~~~~~~~~~~~~-----------------l~~~Gy~~ye~~~fa~-----~~~~~~hn~ 248 (374)
T PRK05799 203 GKLKLPDEEEEREMYHYTIEF-----------------LKEKGYHQYEISNFAK-----PGKECRHNL 248 (374)
T ss_pred CCCCCCChHHHHHHHHHHHHH-----------------HHHcCCcEEeeeeeEC-----CCcchhhHH
Confidence 999999999999998877765 4788999999999996 477888886
No 15
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=100.00 E-value=6.4e-41 Score=354.87 Aligned_cols=241 Identities=21% Similarity=0.217 Sum_probs=205.4
Q ss_pred CCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCC
Q 008466 115 RCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMS 193 (564)
Q Consensus 115 ~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~ 193 (564)
+|+|||||+.+|.|| +|. ++.... ...+.|.+.+.+++..........++++| |+||||+.
T Consensus 3 lYiHiPFC~~~C~yC------~f~----~~~~~~--------~~~~~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~ 64 (360)
T TIGR00539 3 LYIHIPFCENKCGYC------DFN----SYENKS--------GPKEEYTQALCQDLKHALSQTDQEPLESIFIGGGTPNT 64 (360)
T ss_pred EEEEeCCCcCcCCCC------CCc----ccCcCc--------cCHHHHHHHHHHHHHHHHHhcCCCcccEEEeCCCchhc
Confidence 599999999999999 785 221110 23567999999887643221223458888 57999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHH
Q 008466 194 LPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVAR 273 (564)
Q Consensus 194 l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~ 273 (564)
++++.+.++++.|.+.++. ...+++|+|++|+.++++.++.|+++||+||+|||||+++++|+
T Consensus 65 l~~~~l~~ll~~i~~~~~~-----------------~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~ 127 (360)
T TIGR00539 65 LSVEAFERLFESIYQHASL-----------------SDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLL 127 (360)
T ss_pred CCHHHHHHHHHHHHHhCCC-----------------CCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHH
Confidence 9999999999999887651 24579999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcC
Q 008466 274 DTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTG 352 (564)
Q Consensus 274 ~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G 352 (564)
.+||+|+.+++.++++.++++||. +++|+|+|+||||.+++.++++.+. +++|+++++|+++|.|||+++++.++
T Consensus 128 ~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~---~l~~~~is~y~l~~~~gT~~~~~~~~- 203 (360)
T TIGR00539 128 FLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAK---ELPINHLSAYALSVEPNTNFEKNAKK- 203 (360)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHH---ccCCCEEEeecceEcCCChhhhhhhc-
Confidence 999999999999999999999996 7899999999999999999999998 68899999999999999999987654
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCccccee
Q 008466 353 RYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 353 ~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir 419 (564)
.+++++..+++..+... +..+|+.+|++++||++ |.+|+|+.
T Consensus 204 ---~~~~~~~~~~~~~~~~~-----------------L~~~Gy~~yei~~fa~~-----~~~~~hn~ 245 (360)
T TIGR00539 204 ---LPDDDSCAHFDEVVREI-----------------LEGFGFKQYEVSNYAKA-----GYQVKHNL 245 (360)
T ss_pred ---CcCHHHHHHHHHHHHHH-----------------HHHcCCceeehhhhcCC-----CHHHHHHH
Confidence 46788888888776665 46689999999999964 67788886
No 16
>PRK05660 HemN family oxidoreductase; Provisional
Probab=100.00 E-value=5.3e-41 Score=357.39 Aligned_cols=243 Identities=21% Similarity=0.220 Sum_probs=205.8
Q ss_pred CCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCC
Q 008466 114 HRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFM 192 (564)
Q Consensus 114 ~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt 192 (564)
++|+|||||+.+|.|| +|...+ ..+. ...++|.+.+.++++.........++++| ||||||+
T Consensus 8 ~lYiHiPFC~~~C~yC------~f~~~~--~~~~---------~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs 70 (378)
T PRK05660 8 SLYIHIPWCVQKCPYC------DFNSHA--LKGE---------VPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPS 70 (378)
T ss_pred EEEEEeCCccCcCCCC------CCeecC--CCCc---------CCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCccc
Confidence 4699999999999999 885211 1111 12366999988887643222223468888 5899999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHH
Q 008466 193 SLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVA 272 (564)
Q Consensus 193 ~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL 272 (564)
.++++.+.++++.+.+.++. ....++|+|++|++++.+.++.|+++|++||+|||||+++++|
T Consensus 71 ~l~~~~l~~ll~~l~~~~~~-----------------~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L 133 (378)
T PRK05660 71 LFSAEAIQRLLDGVRARLPF-----------------APDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKL 133 (378)
T ss_pred cCCHHHHHHHHHHHHHhCCC-----------------CCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHH
Confidence 99999999999999988762 2457999999999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHc
Q 008466 273 RDTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKT 351 (564)
Q Consensus 273 ~~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~ 351 (564)
+.++|+|+.+++.++++.++++||+ +++|+|+|+||||.+++.++++.+. +++|++|++|++.+.|||++++. .
T Consensus 134 ~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~---~l~p~~is~y~l~~~~gT~l~~~--~ 208 (378)
T PRK05660 134 KRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLRQAI---ALNPPHLSWYQLTIEPNTLFGSR--P 208 (378)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHH---hcCCCeEEeeccEeccCCccccc--C
Confidence 9999999999999999999999998 5799999999999999999999998 68899999999999999999873 1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCccccee
Q 008466 352 GRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 352 G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir 419 (564)
...+++++..+++..+... +..+|+.+|++++||+ .|.+|+|+.
T Consensus 209 --~~~~~~~~~~~~~~~~~~~-----------------L~~~Gy~~yei~~fa~-----~~~~~~hn~ 252 (378)
T PRK05660 209 --PVLPDDDALWDIFEQGHQL-----------------LTAAGYQQYETSAYAK-----PGYQCQHNL 252 (378)
T ss_pred --CCCcCHHHHHHHHHHHHHH-----------------HHHcCCcEeecccccC-----CChhHHHHH
Confidence 2346778888888877765 4789999999999996 467898886
No 17
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=1.2e-40 Score=356.49 Aligned_cols=245 Identities=20% Similarity=0.178 Sum_probs=206.4
Q ss_pred CCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCC
Q 008466 114 HRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFM 192 (564)
Q Consensus 114 ~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt 192 (564)
++|+|||||..+|.|| +|.... +....+ ...++|++.+.++++.....+...++++| ||||||+
T Consensus 21 ~lYiHIPFC~~~C~yC------~f~~~~--~~~~~~-------~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs 85 (394)
T PRK08898 21 SLYVHFPWCVRKCPYC------DFNSHE--WKDGGA-------IPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPS 85 (394)
T ss_pred EEEEEeCCccCcCCCC------CCcccc--cCCCCc-------cCHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcC
Confidence 4699999999999999 886221 111100 12477999999988755322223469999 4799999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHH
Q 008466 193 SLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVA 272 (564)
Q Consensus 193 ~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL 272 (564)
.++++++.++++.|++.++. ....++|+|++|++++.+.|+.|+++|++||||||||+++++|
T Consensus 86 ~L~~~~L~~ll~~i~~~~~~-----------------~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L 148 (394)
T PRK08898 86 LLSAAGLDRLLSDVRALLPL-----------------DPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHL 148 (394)
T ss_pred CCCHHHHHHHHHHHHHhCCC-----------------CCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHH
Confidence 99999999999999998862 2447999999999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcC
Q 008466 273 RDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTG 352 (564)
Q Consensus 273 ~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G 352 (564)
+.+||+|+.+++.++++.+++.+..+++|||+||||||.+++.++++.+. +++|++|++|++.+.|||++++..
T Consensus 149 ~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~~~~~~~l~~~~---~l~p~~is~y~l~~~~gT~l~~~~--- 222 (394)
T PRK08898 149 KALGRIHDGAEARAAIEIAAKHFDNFNLDLMYALPGQTLDEALADVETAL---AFGPPHLSLYHLTLEPNTLFAKFP--- 222 (394)
T ss_pred HHhCCCCCHHHHHHHHHHHHHhCCceEEEEEcCCCCCCHHHHHHHHHHHH---hcCCCEEEEeeeEECCCChhhhcc---
Confidence 99999999999999999999987679999999999999999999999997 688999999999999999998742
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCccccee
Q 008466 353 RYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 353 ~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir 419 (564)
...++.++..+|...+... |..+|+.+|++++||+ .|.+|+|++
T Consensus 223 -~~~~~~~~~~~~~~~~~~~-----------------L~~~Gy~~ye~~~fa~-----~~~~~~hn~ 266 (394)
T PRK08898 223 -PALPDDDASADMQDWIEAR-----------------LAAAGYAHYEVSAYAK-----PGRQCRHNL 266 (394)
T ss_pred -CCCCChHHHHHHHHHHHHH-----------------HHHcCCchhccccccC-----CCccchhHH
Confidence 1346777778887766554 5789999999999996 477788887
No 18
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=4.3e-40 Score=350.64 Aligned_cols=244 Identities=21% Similarity=0.341 Sum_probs=211.6
Q ss_pred CCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCC
Q 008466 115 RCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMS 193 (564)
Q Consensus 115 ~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~ 193 (564)
+|+|||||+.+|.|| +|.. ..... ...++|.+.+.++++..... ....+++| |+|||||.
T Consensus 4 lYihiPfC~~~C~yC------~~~~---~~~~~---------~~~~~y~~~l~~Ei~~~~~~-~~~~i~~i~~gGGtpt~ 64 (377)
T PRK08599 4 AYIHIPFCEHICYYC------DFNK---VFIKN---------QPVDEYLDALIKEMNTYAIR-PFDKLKTIYIGGGTPTA 64 (377)
T ss_pred EEEEeCCcCCCCCCC------CCee---eccCc---------cCHHHHHHHHHHHHHHhhhc-CCCceeEEEeCCCCccc
Confidence 599999999999999 7751 11111 13467999998888654322 23468888 57999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHH
Q 008466 194 LPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVAR 273 (564)
Q Consensus 194 l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~ 273 (564)
++++++.++++.+++.++. ..+++||+|++|++++++.++.|+++|++||+|||||+++++|+
T Consensus 65 l~~~~l~~ll~~i~~~~~~-----------------~~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~ 127 (377)
T PRK08599 65 LSAEQLERLLTAIHRNLPL-----------------SGLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLK 127 (377)
T ss_pred CCHHHHHHHHHHHHHhCCC-----------------CCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 9999999999999987751 23468999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcC
Q 008466 274 DTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTG 352 (564)
Q Consensus 274 ~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G 352 (564)
.++|+|+.+++.++++.++++||. +++|+|+|+||||.+++.++++.+. +++|+++++|++.+.|||++++++.+|
T Consensus 128 ~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~~~~l~~~~---~l~~~~i~~y~l~~~pgT~~~~~~~~g 204 (377)
T PRK08599 128 KIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKESLAKAL---ALDIPHYSAYSLILEPKTVFYNLMRKG 204 (377)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHHHHHHHHHH---ccCCCEEeeeceeecCCChhHHHHhcC
Confidence 999999999999999999999998 6789999999999999999999997 688999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCccccee
Q 008466 353 RYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 353 ~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir 419 (564)
.+..++++...+++..+.+. +..+|+.+|++++|++ .|.+|+|+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~-----------------l~~~Gy~~~~~~~fa~-----~~~~~~~n~ 249 (377)
T PRK08599 205 KLRLPGEDLEAEMYEYLMDE-----------------MEAHGFHQYEISNFAK-----PGFESRHNL 249 (377)
T ss_pred CCCCCCHHHHHHHHHHHHHH-----------------HHHcCCcEeeeeeeeC-----CChHHHHHH
Confidence 99888899988888877765 4788999999999996 467788875
No 19
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=100.00 E-value=1.4e-38 Score=344.30 Aligned_cols=241 Identities=20% Similarity=0.247 Sum_probs=201.5
Q ss_pred CCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCC
Q 008466 115 RCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMS 193 (564)
Q Consensus 115 ~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~ 193 (564)
+|+|||||+.+|.|| +|. +..+.. ....+.|++.+.++++.........++.+| |||||||.
T Consensus 42 lYvHIPFC~~~C~yC------~~~----~~~~~~-------~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~ 104 (430)
T PRK08208 42 LYIHIPFCEMRCGFC------NLF----TRTGAD-------AEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGTPTL 104 (430)
T ss_pred EEEEeCCccCcCCCC------CCc----cccCCc-------cchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCcccc
Confidence 599999999999999 775 222211 123467999998888754321233457777 68999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHH
Q 008466 194 LPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVAR 273 (564)
Q Consensus 194 l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~ 273 (564)
++++++.+|++.|.+.++.. ..++++|+|++|++++++.|+.|+++|++||+|||||+++++|+
T Consensus 105 l~~~~l~~Ll~~i~~~~~~~----------------~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~ 168 (430)
T PRK08208 105 LNAAELEKLFDSVERVLGVD----------------LGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELH 168 (430)
T ss_pred CCHHHHHHHHHHHHHhCCCC----------------CCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 99999999999998877510 12468999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcC
Q 008466 274 DTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTG 352 (564)
Q Consensus 274 ~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G 352 (564)
.++|+|+.+++.++++.++++||. +++|||+|+||||.+++.++++.+. +++|++|++|++.+.|||+|++...
T Consensus 169 ~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~---~l~~~~is~y~L~~~~~T~l~~~~~-- 243 (430)
T PRK08208 169 ALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQAL---VYRPEELFLYPLYVRPLTGLGRRAR-- 243 (430)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHH---hCCCCEEEEccccccCCCccchhcC--
Confidence 999999999999999999999998 4689999999999999999999998 6889999999999999999987542
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCccccee
Q 008466 353 RYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 353 ~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir 419 (564)
.+.++..+|+..+.+. +..+|+.+|++++||++ |.+|+++.
T Consensus 244 ----~~~~~~~~m~~~~~~~-----------------L~~~Gy~~yei~~far~-----~~~~~~~~ 284 (430)
T PRK08208 244 ----AWDDQRLSLYRLARDL-----------------LLEAGYTQTSMRMFRRN-----DAPDKGAP 284 (430)
T ss_pred ----CCHHHHHHHHHHHHHH-----------------HHHcCCeEEeecceecC-----CcccCCCC
Confidence 3568888888877765 57899999999999975 44455554
No 20
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=2.7e-37 Score=336.31 Aligned_cols=286 Identities=21% Similarity=0.233 Sum_probs=223.7
Q ss_pred HHHHhCCC-----CCCCHHHHHHhCChhhHHHhhhHHhcC-CCCccCCceeEEeecCCCCCccccCCCCCCcCCCCCCCC
Q 008466 62 ACRKYGLA-----RAPKLVEMIAALPETDREALLPKLRAK-PVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDS 135 (564)
Q Consensus 62 ~~~~y~~~-----~~p~~~~i~~~~~~~~~~~l~~~l~~k-p~rt~sgv~vvavmt~p~~cphIPfC~~~C~YC~~~~~~ 135 (564)
+.++|..+ +||....+-..+.+.... ..+... |-+.. ++|+|||||+.+|.||
T Consensus 9 ~~~~~~~~~p~~~~yp~~~~~~~~~~~~~~~---~~~~~~~~~~~~------------~LYvHIPfC~~~C~yC------ 67 (453)
T PRK13347 9 LLRYFDAAVPRYTSYPTAPEFSPAFGEDTYR---EWLRQIGPEEPV------------SLYLHVPFCRSLCWFC------ 67 (453)
T ss_pred HHHHcCCCCCCCCCCCCccccCCCCCHHHHH---HHHHhccCCCce------------EEEEEeCCccccCCCC------
Confidence 66677543 678777665555444322 223222 22222 3699999999999999
Q ss_pred CCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCC-CCCcEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCC
Q 008466 136 DFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGH-SVDKVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGH 213 (564)
Q Consensus 136 ~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~-~~~kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~ 213 (564)
+|... .... ....+.|++.+.+++++....+ ...+|..| |+||||+.++++++.++++.|.+.++.
T Consensus 68 ~~~~~---~~~~--------~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~- 135 (453)
T PRK13347 68 GCNTI---ITQR--------DAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILNPDQFERLMAALRDAFDF- 135 (453)
T ss_pred CCcCc---Cccc--------cchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCCHHHHHHHHHHHHHhCCC-
Confidence 77511 1111 1235679999999888544322 23468888 689999999999999999999987751
Q ss_pred CchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHH
Q 008466 214 TSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKD 293 (564)
Q Consensus 214 ~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~ 293 (564)
....++++|++|++++++.++.|+++|++||+|||||+++++|+.+||+|+.+++.++++.+++
T Consensus 136 ----------------~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~ 199 (453)
T PRK13347 136 ----------------APEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRA 199 (453)
T ss_pred ----------------CCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 2447999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHc--CCCCCCCHHHHHHHHHHHH
Q 008466 294 AGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKT--GRYRNYPPEQLVDIVARIL 370 (564)
Q Consensus 294 ~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~--G~~~~~~~ee~~~~~~~~~ 370 (564)
+||+ +++|||+||||||.+++.++++.+. +++|++|++|.+...|+ ....++ +....+++++..+++..+.
T Consensus 200 ~G~~~v~~dli~GlPgqt~e~~~~tl~~~~---~l~p~~i~~y~l~~~p~---~~~~~~~~~~~~lp~~~~~~~~~~~~~ 273 (453)
T PRK13347 200 AGFESINFDLIYGLPHQTVESFRETLDKVI---ALSPDRIAVFGYAHVPS---RRKNQRLIDEAALPDAEERLRQARAVA 273 (453)
T ss_pred cCCCcEEEeEEEeCCCCCHHHHHHHHHHHH---hcCCCEEEEeccccccc---hhhHHhcCCccCCcCHHHHHHHHHHHH
Confidence 9997 7899999999999999999999998 68899999999985554 333332 5667788999999988877
Q ss_pred HhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhcc-----ccCCccccee
Q 008466 371 AMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMD-----DLGLKCRDVR 419 (564)
Q Consensus 371 ~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~-----~~g~~c~~ir 419 (564)
+. |..+|+.+|++++||++.-. ..|.-|+|+.
T Consensus 274 ~~-----------------L~~~Gy~~~~~~~far~~~~~~~a~~~g~l~r~~~ 310 (453)
T PRK13347 274 DR-----------------LLAAGYVPIGLDHFALPDDELAIAQREGRLHRNFQ 310 (453)
T ss_pred HH-----------------HHHCCCEEEeccceeCCCchhhHHHhcCccccccc
Confidence 76 47899999999999975432 2344477775
No 21
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=100.00 E-value=1.5e-36 Score=313.88 Aligned_cols=206 Identities=22% Similarity=0.379 Sum_probs=188.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHH---cCC-Ce
Q 008466 184 FILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLS---YGC-TR 259 (564)
Q Consensus 184 ~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~---~G~-~r 259 (564)
.+|+|||||.+|.+.+.++++.+.+ + +.+++|++++|||+++++.++.|++ +|+ ++
T Consensus 81 iyf~ggt~t~l~~~~L~~l~~~i~~-~-------------------~~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~ 140 (302)
T TIGR01212 81 AYFQAYTNTYAPVEVLKEMYEQALS-Y-------------------DDVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVW 140 (302)
T ss_pred EEEECCCcCCCCHHHHHHHHHHHhC-C-------------------CCEEEEEEEecCCcCCHHHHHHHHHhhhCCceEE
Confidence 3368999999999999999988865 2 2568999999999999988877775 599 78
Q ss_pred EEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeee
Q 008466 260 LEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLV 339 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v 339 (564)
|++|+||+++++|+.|||+|+.+++.++++.++++|+++++|+|+||||||.+++.++++.+. +++|+++++|++.|
T Consensus 141 i~lGlQS~~d~~L~~i~Rg~t~~~~~~ai~~l~~~gi~v~~~lI~GlPget~e~~~~t~~~l~---~l~~d~i~i~~l~~ 217 (302)
T TIGR01212 141 VELGLQTAHDKTLKKINRGHDFACYVDAVKRARKRGIKVCSHVILGLPGEDREEMMETAKIVS---LLDVDGIKIHPLHV 217 (302)
T ss_pred EEEccCcCCHHHHHHHcCcChHHHHHHHHHHHHHcCCEEEEeEEECCCCCCHHHHHHHHHHHH---hcCCCEEEEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999997 68899999999999
Q ss_pred cCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCC---CcchHHHHHHhhccccC
Q 008466 340 IRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGV---EKGNLRELALARMDDLG 412 (564)
Q Consensus 340 ~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~---~~~~~~~~a~~~~~~~g 412 (564)
.|||+|++++++|.|.+++.+++++.+..+++.+|+++.++|+..|+|..+..+|. .+..+.+...+.|+.+|
T Consensus 218 ~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~~l~~~~~i~Rl~~~~~~~~~l~~~~~~~k~~~l~~i~~~l~~~~ 293 (302)
T TIGR01212 218 VKGTKMAKMYEKGELKTLSLEEYISLACDFLEHLPPEVVIHRISGDAPRETLIAPEWCKNKWEIMNKISEELERRG 293 (302)
T ss_pred cCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCcCeEEEEecCCCCccceEcccccccHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999998777765 55667777788888776
No 22
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=100.00 E-value=5e-36 Score=294.35 Aligned_cols=266 Identities=21% Similarity=0.317 Sum_probs=211.7
Q ss_pred ceeEEeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHH-HHHcCCCCCcE
Q 008466 104 IAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQ-LKRLGHSVDKV 182 (564)
Q Consensus 104 v~vvavmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~-l~~~g~~~~kv 182 (564)
|++-+.+++|++--- +-.+.|+||+.....||..++ ..+..+-+..... ..+. ....|.
T Consensus 26 v~ld~GF~CPNRDGt--i~rGGCtFC~~~g~~d~~~~~-----------------~~~i~~Q~~~q~~~~~kK-~~~~ky 85 (312)
T COG1242 26 VTLDGGFSCPNRDGT--IGRGGCTFCSVAGSGDFAGQP-----------------KISIAEQFKEQAERMHKK-WKRGKY 85 (312)
T ss_pred EeccCCCCCCCCCCc--ccCCceeeecCCCCCccccCc-----------------ccCHHHHHHHHHHHHHHh-hcCCcE
Confidence 555666665543221 112789999765544554211 1122222222222 2222 233442
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcC---CCe
Q 008466 183 EFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYG---CTR 259 (564)
Q Consensus 183 e~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G---~~r 259 (564)
-..|--.|.|.-|.+.+++..+... + .+++++++|.||||++.++.|+.|.++. -.|
T Consensus 86 iaYFQ~~TNTyApvevLre~ye~aL---~-----------------~~~VVGLsIgTRPDClpd~VldlL~e~~~r~~vW 145 (312)
T COG1242 86 IAYFQAYTNTYAPVEVLREMYEQAL---S-----------------EAGVVGLSIGTRPDCLPDDVLDLLAEYNKRYEVW 145 (312)
T ss_pred EEEEeccccccCcHHHHHHHHHHHh---C-----------------cCCeeEEeecCCCCCCcHHHHHHHHHHhhheEEE
Confidence 2235689999999988766554332 2 3578999999999999999999999886 479
Q ss_pred EEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeee
Q 008466 260 LEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLV 339 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v 339 (564)
|++|+||.++++++.|||||+.+.+.+|++++|+.||+|++|+|.||||||.+++++|++.+. .+++++|++|+|.+
T Consensus 146 vELGLQT~h~~Tlk~iNRgHd~~~y~dav~r~rkrgIkvc~HiI~GLPgE~~~~mleTak~v~---~~~v~GIKlH~Lhv 222 (312)
T COG1242 146 VELGLQTAHDKTLKRINRGHDFACYVDAVKRLRKRGIKVCTHLINGLPGETRDEMLETAKIVA---ELGVDGIKLHPLHV 222 (312)
T ss_pred EEeccchhhHHHHHHHhcccchHHHHHHHHHHHHcCCeEEEEEeeCCCCCCHHHHHHHHHHHH---hcCCceEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999886 68899999999999
Q ss_pred cCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHH---hCCCcchHHHHHHhhccccC
Q 008466 340 IRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVT---SGVEKGNLRELALARMDDLG 412 (564)
Q Consensus 340 ~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~---~G~~~~~~~~~a~~~~~~~g 412 (564)
.+||+|.++|.+|+++.++.+++++++.++++.+||.+.++|+..|.|.+... |...+.++-|-+.+.|+.+|
T Consensus 223 vkgT~m~k~Y~~G~l~~ls~eeYv~~~~d~le~lpp~vviHRitgd~pr~~li~P~W~~~kw~vln~I~~eL~rrg 298 (312)
T COG1242 223 VKGTPMEKMYEKGRLKFLSLEEYVELVCDQLEHLPPEVVIHRITGDAPRDTLIAPLWSLNKWEVLNAIDKELERRG 298 (312)
T ss_pred ecCChHHHHHHcCCceeccHHHHHHHHHHHHHhCCcceEEEEecCCCCccceecchhhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999998665 44556667788888888887
No 23
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=100.00 E-value=9.6e-36 Score=324.47 Aligned_cols=237 Identities=18% Similarity=0.242 Sum_probs=198.0
Q ss_pred CCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCC-CCCcEEEE-EEcCCCC
Q 008466 115 RCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGH-SVDKVEFI-LMGGTFM 192 (564)
Q Consensus 115 ~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~-~~~kve~I-~~GGTpt 192 (564)
+|+|||||+.+|.|| +|. +..+.. ....+.|.+.+.++++...... ...+|++| |+||||+
T Consensus 52 lYiHiPFC~~~C~yC------~~~----~~~~~~-------~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~ 114 (455)
T TIGR00538 52 LYVHIPFCHKACYFC------GCN----VIITRQ-------KHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPT 114 (455)
T ss_pred EEEEeCCccCcCCCC------CCC----ccCCCC-------cchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcC
Confidence 699999999999999 775 222111 1124568888888877543222 12468888 6899999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHH
Q 008466 193 SLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVA 272 (564)
Q Consensus 193 ~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL 272 (564)
.++++++.++++.+.+.++ + ...+++++|++|+.++++.++.|+++|++||+||+||+++++|
T Consensus 115 ~l~~~~l~~ll~~i~~~~~--~---------------~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l 177 (455)
T TIGR00538 115 YLSPEQISRLMKLIRENFP--F---------------NADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQ 177 (455)
T ss_pred CCCHHHHHHHHHHHHHhCC--C---------------CCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHH
Confidence 9999999999999998775 1 2346899999999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCC-hhHHHHH
Q 008466 273 RDTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGT-GLYELWK 350 (564)
Q Consensus 273 ~~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT-~L~~~~~ 350 (564)
+.+||+|+.+++.++++.++++||+ +.+|+|+|+||||.+++.++++.+. +++|++|++|++.+.|++ +..+.
T Consensus 178 ~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~---~l~~~~is~y~L~~~p~~~~~~~~-- 252 (455)
T TIGR00538 178 QAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQTKESFAKTLEKVA---ELNPDRLAVFNYAHVPWVKPAQRK-- 252 (455)
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCCHHHHHHHHHHHH---hcCCCEEEEecCccccchhHHHhc--
Confidence 9999999999999999999999997 7799999999999999999999998 688999999999998875 33322
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhh
Q 008466 351 TGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALAR 407 (564)
Q Consensus 351 ~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~ 407 (564)
.+....+++++..+++..+.+. +..+|+.+|++++||++.
T Consensus 253 ~~~~~~~~~e~~~~~~~~~~~~-----------------L~~~Gy~~~~~~~fa~~~ 292 (455)
T TIGR00538 253 IPEAALPSAEEKLDILQETIAF-----------------LTEAGYQFIGMDHFAKPD 292 (455)
T ss_pred ccccCCCCHHHHHHHHHHHHHH-----------------HHHCCCEEEeccceeCCC
Confidence 3455567899999998877765 478899999999999753
No 24
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=2e-35 Score=321.76 Aligned_cols=248 Identities=18% Similarity=0.201 Sum_probs=200.6
Q ss_pred CCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCC-CCcEEEE-EEcCCCC
Q 008466 115 RCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHS-VDKVEFI-LMGGTFM 192 (564)
Q Consensus 115 ~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~-~~kve~I-~~GGTpt 192 (564)
+|+|||||+.+|.|| +|.. ..+.. ....+.|.+.+.+++........ ..++++| |+||||+
T Consensus 52 LYvHIPFC~~~C~yC------~~~~----~~~~~-------~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs 114 (453)
T PRK09249 52 LYVHIPFCRSLCYYC------GCNK----IITRD-------HEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTPT 114 (453)
T ss_pred EEEEeCCccccCCCC------CCcc----cCCCC-------cchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCcccc
Confidence 699999999999999 7751 11111 12346799999888875443222 3458888 6899999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHH
Q 008466 193 SLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVA 272 (564)
Q Consensus 193 ~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL 272 (564)
.++++++.++++.+.+.++. ...+++|+|++|+.++++.++.|+++||+||+||+||+++++|
T Consensus 115 ~l~~~~l~~ll~~l~~~~~~-----------------~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L 177 (453)
T PRK09249 115 FLSPEQLRRLMALLREHFNF-----------------APDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQ 177 (453)
T ss_pred cCCHHHHHHHHHHHHHhCCC-----------------CCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHH
Confidence 99999999999999887751 2457999999999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCC-cEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHc
Q 008466 273 RDTNRGHTVAAVADCFCLAKDAGF-KVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKT 351 (564)
Q Consensus 273 ~~i~Rght~~~~~~ai~~lr~~G~-~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~ 351 (564)
+.++|+|+.+++.++++.++++|| .+++|+|+|+||||.+++.++++.+. +++|++|++|++.+.|++.... ...
T Consensus 178 ~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~~l~~~~---~l~~~~i~~y~l~~~p~~~~~~-~~~ 253 (453)
T PRK09249 178 KAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLPKQTPESFARTLEKVL---ELRPDRLAVFNYAHVPWLFKAQ-RKI 253 (453)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCHHHHHHHHHHHH---hcCCCEEEEccCccchhhhhHh-cCC
Confidence 999999999999999999999999 58899999999999999999999998 6889999999998665543221 111
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHHhhccccCCccccee
Q 008466 352 GRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 352 G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~~~~~~~g~~c~~ir 419 (564)
+....++.++..+++..+.+. +..+|+.+|++++|++++.. ...|+|+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~-----------------L~~~Gy~~ye~s~far~~~~--~~~~~~n~ 302 (453)
T PRK09249 254 DEADLPSPEEKLAILQQTIET-----------------LTEAGYQYIGMDHFALPDDE--LAIAQREG 302 (453)
T ss_pred CcccCCCHHHHHHHHHHHHHH-----------------HHHCCCEEEeccceeCCCch--HHHHHHhC
Confidence 334567888888888877775 47889999999999974321 12377764
No 25
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=5.6e-35 Score=315.50 Aligned_cols=224 Identities=17% Similarity=0.181 Sum_probs=179.8
Q ss_pred CCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCC
Q 008466 115 RCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMS 193 (564)
Q Consensus 115 ~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~ 193 (564)
+|+|||||.++|.|| +|+ ++...+ ...+.|.+.+.++++..... ..++++| |||||||.
T Consensus 55 LYvHIPFC~~~C~yC------~f~----~~~~~~--------~~~~~Y~~~L~~Ei~~~~~~--~~~~~siy~GGGTPs~ 114 (433)
T PRK08629 55 LYAHVPFCHTLCPYC------SFH----RFYFKE--------DKARAYFISLRKEMEMVKEL--GYDFESMYVGGGTTTI 114 (433)
T ss_pred EEEEeCCccCcCCCC------CCc----CcCCCc--------chHHHHHHHHHHHHHHHHhc--CCceEEEEECCCcccc
Confidence 699999999999999 886 222211 23567999999988754321 2458988 58999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHH
Q 008466 194 LPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVAR 273 (564)
Q Consensus 194 l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~ 273 (564)
+ ++.+.++++.+++.++ ..+||+|++|++++++.|+.|+++ |+||||||||+++++|+
T Consensus 115 l-~~~L~~ll~~i~~~f~--------------------i~eis~E~~P~~lt~e~L~~l~~~-vnrlsiGVQS~~d~vLk 172 (433)
T PRK08629 115 L-EDELAKTLELAKKLFS--------------------IKEVSCESDPNHLDPPKLKQLKGL-IDRLSIGVQSFNDDILK 172 (433)
T ss_pred C-HHHHHHHHHHHHHhCC--------------------CceEEEEeCcccCCHHHHHHHHHh-CCeEEEecCcCCHHHHH
Confidence 7 6889999999887664 248999999999999999999999 99999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHc--CCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHH
Q 008466 274 DTNRGHTVAAVADCFCLAKDA--GFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWK 350 (564)
Q Consensus 274 ~i~Rght~~~~~~ai~~lr~~--G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~ 350 (564)
.|||+|+..+..++++.++.+ .|. +++|||+||||||.+++.++++.+. +++|++|++|++.+.|+|.+. .
T Consensus 173 ~~gR~h~~~~~~~~~~~l~~~~~~~~~v~~DlI~GlPgqT~e~~~~~l~~~~---~l~p~~is~y~L~~~~~t~~~---~ 246 (433)
T PRK08629 173 MVDRYEKFGSGQETFEKIMKAKGLFPIINVDLIFNFPGQTDEVLQHDLDIAK---RLDPRQITTYPLMKSHQTRKS---V 246 (433)
T ss_pred HcCCCCChhHHHHHHHHHHHHhccCCeEEEEEEccCCCCCHHHHHHHHHHHH---hCCCCEEEEccceeccCchhh---h
Confidence 999999875555555444443 244 7789999999999999999999998 688999999999999999743 4
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHHH
Q 008466 351 TGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELAL 405 (564)
Q Consensus 351 ~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a~ 405 (564)
++....+++++..++...+...+ . |+.+++..+|++
T Consensus 247 ~~~~~~p~~d~~~~~~~~~~~~l------------------~-Gy~~~s~~~f~~ 282 (433)
T PRK08629 247 KGSLGASQKDNERQYYQIINELF------------------G-QYNQLSAWAFSK 282 (433)
T ss_pred cCCCCCcCHHHHHHHHHHHHHHH------------------C-CCeEecccccCC
Confidence 66677778877777766555442 3 898877777764
No 26
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=99.95 E-value=1.2e-26 Score=241.12 Aligned_cols=166 Identities=20% Similarity=0.339 Sum_probs=145.4
Q ss_pred EEEEcC---CCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCC-e
Q 008466 184 FILMGG---TFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCT-R 259 (564)
Q Consensus 184 ~I~~GG---Tpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~-r 259 (564)
.+|.+| .|+.+|++.+.++++.+.+. + ...+|++|+|||+++++.|+.|+++|++ +
T Consensus 72 kif~sgsf~D~~~~~~~~~~~i~~~l~~~-~-------------------~~~~i~~esrpd~i~~e~L~~l~~aG~~~~ 131 (313)
T TIGR01210 72 KIFTSGSFLDDREVPKETRNYIFEKIAQR-D-------------------NLKEVVVESRPEFIDEEKLEELRKIGVNVE 131 (313)
T ss_pred EEecCCCcCCcCcCCHHHHHHHHHHHHhc-C-------------------CcceEEEEeCCCcCCHHHHHHHHHcCCCEE
Confidence 346666 55678999988888887652 1 2358999999999999999999999998 8
Q ss_pred EEEccCCCCHHHHH-hcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCC----CCHHHHHHHHHHHhcCCCCCCCeEEE
Q 008466 260 LEIGVQSTYEDVAR-DTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPN----VGVERDLESFREFFESPLFRADGLKI 334 (564)
Q Consensus 260 vsiGvQS~~d~vL~-~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPg----et~e~~~~t~~~~~~~~~l~pd~i~i 334 (564)
|+||+||+++++|+ .+|||||.+++.+|++.++++||.+.++||+|+|+ |+.+++.++++.+. .++ +++++
T Consensus 132 v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~~~i~G~P~~se~ea~ed~~~ti~~~~---~l~-~~vs~ 207 (313)
T TIGR01210 132 VAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGAGVKAYLLFKPPFLSEKEAIADMISSIRKCI---PVT-DTVSI 207 (313)
T ss_pred EEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEEEEEecCCCCChhhhHHHHHHHHHHHH---hcC-CcEEE
Confidence 99999999999995 89999999999999999999999999999999996 45566777888876 466 99999
Q ss_pred eeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhC
Q 008466 335 YPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMV 373 (564)
Q Consensus 335 y~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~l 373 (564)
|+++|.|||+|+++|++|.|+|+..+..++.+.++...-
T Consensus 208 ~~l~v~~gT~l~~~~~~G~~~pp~lws~~e~l~e~~~~~ 246 (313)
T TIGR01210 208 NPTNVQKGTLVEFLWNRGLYRPPWLWSVAEVLKEAKKIG 246 (313)
T ss_pred ECCEEeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999998889999888887543
No 27
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=99.91 E-value=2.9e-23 Score=228.80 Aligned_cols=192 Identities=17% Similarity=0.183 Sum_probs=153.7
Q ss_pred EeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHH-cCCCCCcEEEE-
Q 008466 108 AVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKR-LGHSVDKVEFI- 185 (564)
Q Consensus 108 avmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~-~g~~~~kve~I- 185 (564)
+++.++++||| +|+||.. +..+.+ .+..+-.++..++..+.+ .| +..+
T Consensus 195 ~~i~tSRGCp~------~C~FC~~---------~~~~~~----------~R~rs~e~Vv~Ei~~l~~~~g-----v~~~~ 244 (497)
T TIGR02026 195 AVPNFARGCPF------TCNFCSQ---------WKFWRR----------YRHRDPKKFVDEIEWLVRTHG-----VGFFI 244 (497)
T ss_pred eeeeccCCCCC------CCCCCCC---------CCCCce----------eecCCHHHHHHHHHHHHHHcC-----CCEEE
Confidence 34455678996 9999932 111111 233444555555555543 34 5556
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCC--CHHHHHHHHHcCCCeEEEc
Q 008466 186 LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYC--LGPHLRQMLSYGCTRLEIG 263 (564)
Q Consensus 186 ~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i--~~e~L~~L~~~G~~rvsiG 263 (564)
|.+++|+ ++.++..+|++.|.+.-+ -.+.|.+++|++.+ +++.++.|+++||++|++|
T Consensus 245 ~~Dd~f~-~~~~~~~~l~~~l~~~~~-------------------l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iG 304 (497)
T TIGR02026 245 LADEEPT-INRKKFQEFCEEIIARNP-------------------ISVTWGINTRVTDIVRDADILHLYRRAGLVHISLG 304 (497)
T ss_pred EEecccc-cCHHHHHHHHHHHHhcCC-------------------CCeEEEEecccccccCCHHHHHHHHHhCCcEEEEc
Confidence 5678876 477778888888765321 12578899999988 8999999999999999999
Q ss_pred cCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCC
Q 008466 264 VQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGT 343 (564)
Q Consensus 264 vQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT 343 (564)
+||+++++|+.++|+++.+++.++++.++++||.+.+++|+|+||||.+++.++++++. +++|+++.++.++|.|||
T Consensus 305 iES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~---~l~~~~~~~~~~tP~PGT 381 (497)
T TIGR02026 305 TEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLL---DWDPDQANWLMYTPWPFT 381 (497)
T ss_pred cccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHH---HcCCCceEEEEecCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999998 578999999999999999
Q ss_pred hhHHHHHcC
Q 008466 344 GLYELWKTG 352 (564)
Q Consensus 344 ~L~~~~~~G 352 (564)
+|++..++.
T Consensus 382 ~l~~~~~~~ 390 (497)
T TIGR02026 382 SLFGELSDR 390 (497)
T ss_pred HHHHHHHhh
Confidence 999976543
No 28
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=99.91 E-value=8.1e-23 Score=224.14 Aligned_cols=193 Identities=17% Similarity=0.195 Sum_probs=149.6
Q ss_pred eEEeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE
Q 008466 106 VVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI 185 (564)
Q Consensus 106 vvavmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I 185 (564)
.+.++| +++||| +|.|| ++ ++.+.+.. .+..+-.+++.++..+.+... .++.|
T Consensus 197 ~~~i~t-sRGCp~------~C~FC------~~---~~~~~g~~--------~r~rs~e~V~~Ei~~~~~~~~---~~~~i 249 (472)
T TIGR03471 197 YISLYT-GRGCPS------KCTFC------LW---PQTVGGHR--------YRTRSAESVIEEVKYALENFP---EVREF 249 (472)
T ss_pred eEEEEe-cCCCCC------CCCCC------CC---CccCCCCc--------eEeCCHHHHHHHHHHHHHhcC---CCcEE
Confidence 344555 567995 99999 32 22232221 133344445554444544321 25666
Q ss_pred -EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEcc
Q 008466 186 -LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGV 264 (564)
Q Consensus 186 -~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGv 264 (564)
|.+++|+ .+.+++.+|++.+.+. .+.|.++++.+ ++++.++.|+++||++|++|+
T Consensus 250 ~f~Dd~f~-~~~~~~~~l~~~l~~~----------------------~i~~~~~~~~~-~~~e~l~~l~~aG~~~v~iGi 305 (472)
T TIGR03471 250 FFDDDTFT-DDKPRAEEIARKLGPL----------------------GVTWSCNARAN-VDYETLKVMKENGLRLLLVGY 305 (472)
T ss_pred EEeCCCCC-CCHHHHHHHHHHHhhc----------------------CceEEEEecCC-CCHHHHHHHHHcCCCEEEEcC
Confidence 5677775 5667777888777541 13577777765 899999999999999999999
Q ss_pred CCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCCh
Q 008466 265 QSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTG 344 (564)
Q Consensus 265 QS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~ 344 (564)
||+++++|+.++|+++.+++.++++.++++|+.+..++|+|+||||.+++.++++.+. +++++.+.++.++|.|||+
T Consensus 306 ES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~---~l~~~~~~~~~l~P~PGT~ 382 (472)
T TIGR03471 306 ESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAK---ELNPHTIQVSLAAPYPGTE 382 (472)
T ss_pred CCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHH---hcCCCceeeeecccCCCcH
Confidence 9999999999999999999999999999999999999999999999999999999987 5789999999999999999
Q ss_pred hHHHHHcC
Q 008466 345 LYELWKTG 352 (564)
Q Consensus 345 L~~~~~~G 352 (564)
|++..++.
T Consensus 383 l~~~~~~~ 390 (472)
T TIGR03471 383 LYDQAKQN 390 (472)
T ss_pred HHHHHHHC
Confidence 99876543
No 29
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=99.90 E-value=1.7e-22 Score=218.12 Aligned_cols=207 Identities=17% Similarity=0.214 Sum_probs=158.9
Q ss_pred EeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-E
Q 008466 108 AVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-L 186 (564)
Q Consensus 108 avmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~ 186 (564)
+.+...++||| +|+||. .+. ..|. .+..+..+++.++..+.+.| ++.| |
T Consensus 140 ~~i~isrGCp~------~CsfC~---------~~~-~~g~---------~r~r~~e~I~~Ei~~l~~~g-----~~ei~l 189 (414)
T TIGR01579 140 AFIKVQDGCNF------FCSYCI---------IPF-ARGR---------SRSVPMEAILKQVKILVAKG-----YKEIVL 189 (414)
T ss_pred EEEEeccCcCC------CCCCCc---------eee-ecCC---------CccCCHHHHHHHHHHHHHCC-----CceEEE
Confidence 44455678996 999992 222 2221 24566777777777777766 4444 5
Q ss_pred EcCCCCCCCH-----HHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-eeCCCCCHHHHHHHHHcC--CC
Q 008466 187 MGGTFMSLPA-----DYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE-TRPDYCLGPHLRQMLSYG--CT 258 (564)
Q Consensus 187 ~GGTpt~l~~-----~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE-trPd~i~~e~L~~L~~~G--~~ 258 (564)
.|.+++.... .++.+|++.+.+. + ....+.+. ++|+.++++.++.|+++| |.
T Consensus 190 ~~~~~~~y~~d~~~~~~l~~Ll~~l~~~-~-------------------~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~ 249 (414)
T TIGR01579 190 TGVNLGSYGDDLKNGTSLAKLLEQILQI-P-------------------GIKRIRLSSIDPEDIDEELLEAIASEKRLCP 249 (414)
T ss_pred eeEccchhccCCCCCCcHHHHHHHHhcC-C-------------------CCcEEEEeCCChhhCCHHHHHHHHhcCccCC
Confidence 6766665542 3466666666531 1 11234444 599999999999999987 89
Q ss_pred eEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHH--cCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEee
Q 008466 259 RLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKD--AGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYP 336 (564)
Q Consensus 259 rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~--~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~ 336 (564)
.+++|+||+++++|+.|||+|+.+++.++++.+++ .|+.+..|||+|+||||.+++.++++++. +++++++.+++
T Consensus 250 ~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~~IvG~PgET~ed~~~tl~~i~---~~~~~~~~~~~ 326 (414)
T TIGR01579 250 HLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTDIIVGFPGESEEDFQETLRMVK---EIEFSHLHIFP 326 (414)
T ss_pred CeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeeeEEEECCCCCHHHHHHHHHHHH---hCCCCEEEeee
Confidence 99999999999999999999999999999999999 89999999999999999999999999997 57899999999
Q ss_pred eeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 337 TLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 337 l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
++|.|||+++++. ...+.++.-+.+..+.++
T Consensus 327 ~sp~pGT~~~~~~-----~~v~~~~~~~r~~~l~~~ 357 (414)
T TIGR01579 327 YSARPGTPASTMK-----DKVPETIKKERVKRLKEL 357 (414)
T ss_pred cCCCCCCchhhCC-----CCCCHHHHHHHHHHHHHH
Confidence 9999999998753 235666666666555443
No 30
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.90 E-value=2.7e-22 Score=219.22 Aligned_cols=208 Identities=17% Similarity=0.182 Sum_probs=155.1
Q ss_pred EEeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-
Q 008466 107 VAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI- 185 (564)
Q Consensus 107 vavmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I- 185 (564)
.|.+....+||| +|+|| .. + ...|+ .+..+..+++.++..+...| ++-|
T Consensus 169 ~a~i~isrGCp~------~CsFC------~i---p-~~~G~---------~rsrs~e~Vv~Ei~~l~~~g-----~~eI~ 218 (467)
T PRK14329 169 SAFVSIMRGCDN------MCTFC------VV---P-FTRGR---------ERSRDPESILNEVRDLFAKG-----YKEVT 218 (467)
T ss_pred EEEEEeccCccc------CCCCC------cc---c-cccCC---------cccCCHHHHHHHHHHHHHCC-----CeEEE
Confidence 445555577885 99999 32 2 22332 24456677777777777766 3333
Q ss_pred EEcCCCCCCC----------HHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-eeCCCCCHHHHHHHHH
Q 008466 186 LMGGTFMSLP----------ADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE-TRPDYCLGPHLRQMLS 254 (564)
Q Consensus 186 ~~GGTpt~l~----------~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE-trPd~i~~e~L~~L~~ 254 (564)
|.|.+.+.+. ...+.++++.+.+... ...+.+. .+|+.++++.++.|++
T Consensus 219 l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~~l~~~~~--------------------~~~ir~~~~~p~~l~~ell~~m~~ 278 (467)
T PRK14329 219 LLGQNVDSYLWYGGGLKKDEAVNFAQLLEMVAEAVP--------------------DMRIRFSTSHPKDMTDDVLEVMAK 278 (467)
T ss_pred EEeecccccccccCCccccccccHHHHHHHHHhcCC--------------------CcEEEEecCCcccCCHHHHHHHHh
Confidence 4454433221 2345666666554321 2356666 4899999999999999
Q ss_pred c--CCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCC
Q 008466 255 Y--GCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRAD 330 (564)
Q Consensus 255 ~--G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd 330 (564)
+ ||.+|+||+||+++++|+.|||++|.+++.++++.+++. ++.+..|||+|+||||.+++.++++++. +++++
T Consensus 279 ~~~g~~~i~iglQSgsd~vLk~m~R~~t~~~~~~~i~~ir~~~~~~~i~~d~IvGfPgET~edf~~tl~~i~---~l~~~ 355 (467)
T PRK14329 279 YDNICKHIHLPVQSGSDRILKLMNRKYTREWYLDRIDAIRRIIPDCGISTDMIAGFPTETEEDHQDTLSLME---EVGYD 355 (467)
T ss_pred CCCCCCeEEeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEeEEEeCCCCCHHHHHHHHHHHH---hhCCC
Confidence 7 899999999999999999999999999999999999997 5668889999999999999999999997 57899
Q ss_pred eEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 008466 331 GLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILA 371 (564)
Q Consensus 331 ~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~ 371 (564)
++.++++++.|||++++.+++. .+.+...+....+.+
T Consensus 356 ~~~v~~~sp~pGT~~~~~~~~~----v~~~~~~~R~~~l~~ 392 (467)
T PRK14329 356 FAFMFKYSERPGTYAARKLEDD----VPEEVKKRRLNEIIA 392 (467)
T ss_pred eEeeeEecCCCCChhhhhCCCC----CCHHHHHHHHHHHHH
Confidence 9999999999999999755432 556666555554444
No 31
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.89 E-value=3.8e-22 Score=216.83 Aligned_cols=203 Identities=16% Similarity=0.143 Sum_probs=149.6
Q ss_pred CCCccc-cCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEc---
Q 008466 114 HRCPHI-ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMG--- 188 (564)
Q Consensus 114 ~~cphI-PfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~G--- 188 (564)
+.+.|| ++|+.+|+|| .++ . ..|. .+..+..+++.++..+...|. +.| +.|
T Consensus 139 ~~~l~isrGC~~~CsfC------~~p---~-~~g~---------~~sr~~e~Iv~Ei~~l~~~G~-----keI~l~g~~~ 194 (440)
T PRK14334 139 SAHLTIMRGCNHHCTYC------IVP---T-TRGP---------EVSRHPDLILRELELLKAAGV-----QEVTLLGQNV 194 (440)
T ss_pred EEEEEeccCCCCCCcCC------Ccc---h-hcCC---------CccCCHHHHHHHHHHHHHCCC-----eEEEEEeccc
Confidence 358898 9999999999 332 1 2222 122334444444455666663 333 333
Q ss_pred -----CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe-eCCCCCHHHHHHHHHc--CCCeE
Q 008466 189 -----GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET-RPDYCLGPHLRQMLSY--GCTRL 260 (564)
Q Consensus 189 -----GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt-rPd~i~~e~L~~L~~~--G~~rv 260 (564)
|++... .+..|++.+.+ .. ...+.+.+ +|+.++++.++.|+++ ||+++
T Consensus 195 ~~yG~d~~~~~---~~~~Ll~~l~~-~~--------------------i~~ir~~~~~p~~i~~ell~~l~~~~~g~~~l 250 (440)
T PRK14334 195 NSYGVDQPGFP---SFAELLRLVGA-SG--------------------IPRVKFTTSHPMNFTDDVIAAMAETPAVCEYI 250 (440)
T ss_pred cccccCCCCcC---CHHHHHHHHHh-cC--------------------CcEEEEccCCcccCCHHHHHHHHhcCcCCCeE
Confidence 333222 34455655532 11 11345543 8999999999999995 59999
Q ss_pred EEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCc--EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeee
Q 008466 261 EIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFK--VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTL 338 (564)
Q Consensus 261 siGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~--v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~ 338 (564)
+||+||+++++|+.|||+|+.+++.++++.++++|+. +..|||+|+||||.+++.++++++. +++++++.++++.
T Consensus 251 ~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~~i~i~~d~IvG~PgEt~ed~~~tl~~i~---~l~~~~i~~f~ys 327 (440)
T PRK14334 251 HLPVQSGSDRVLRRMAREYRREKYLERIAEIREALPDVVLSTDIIVGFPGETEEDFQETLSLYD---EVGYDSAYMFIYS 327 (440)
T ss_pred EeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEECCCCCHHHHHHHHHHHH---hcCCCEeeeeEee
Confidence 9999999999999999999999999999999999866 5689999999999999999999987 5789999999999
Q ss_pred ecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 339 VIRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 339 v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
+.|||+++++. ...++++..+.+..+.+.
T Consensus 328 p~pGT~~~~~~-----~~v~~~~~~~r~~~l~~~ 356 (440)
T PRK14334 328 PRPGTPSYKHF-----QDLPREVKTERLQRLIEK 356 (440)
T ss_pred CCCCChhHhcc-----CCCCHHHHHHHHHHHHHH
Confidence 99999998753 236677776666655554
No 32
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.89 E-value=4.9e-22 Score=215.93 Aligned_cols=208 Identities=18% Similarity=0.269 Sum_probs=159.5
Q ss_pred EeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-E
Q 008466 108 AVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-L 186 (564)
Q Consensus 108 avmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~ 186 (564)
+.+....+||| +|+|| ..+ .+.|. .+..+..+++.+...+...| ++-| +
T Consensus 151 a~l~isrGC~~------~CsFC---------~ip-~~rG~---------~rsr~~e~Vv~Ei~~l~~~G-----~~ei~l 200 (445)
T PRK14340 151 AFVPVMRGCNN------MCAFC---------VVP-FTRGR---------ERSHPFASVLDEVRALAEAG-----YREITL 200 (445)
T ss_pred EEEEeccCCCC------CCCCC---------Ccc-cccCC---------CcCCCHHHHHHHHHHHHHCC-----CeEEEE
Confidence 44555678985 99999 222 22332 24566777887777787766 4444 6
Q ss_pred EcCCCCCCCHH----HHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-eeCCCCCHHHHHHHHHc--CCCe
Q 008466 187 MGGTFMSLPAD----YRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE-TRPDYCLGPHLRQMLSY--GCTR 259 (564)
Q Consensus 187 ~GGTpt~l~~~----~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE-trPd~i~~e~L~~L~~~--G~~r 259 (564)
.|.+++++..+ .+.++++.|.+.. ....+.+. .+|+.++++.++.|+++ ||.+
T Consensus 201 ~~~~~~~y~d~~~~~~l~~Ll~~l~~~~--------------------~~~rir~~~~~p~~l~~ell~~~~~~~~g~~~ 260 (445)
T PRK14340 201 LGQNVNSYSDPEAGADFAGLLDAVSRAA--------------------PEMRIRFTTSHPKDISESLVRTIAARPNICNH 260 (445)
T ss_pred eecccchhhccCCCchHHHHHHHHhhcC--------------------CCcEEEEccCChhhcCHHHHHHHHhCCCCCCe
Confidence 67777655322 3455555554311 22356666 49999999999999997 7999
Q ss_pred EEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeee
Q 008466 260 LEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPT 337 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l 337 (564)
+.||+||++|++|+.|||++|.+++.++++.++++ |+.+..|||+|+||||.+++.++++++. +++++++.++++
T Consensus 261 l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi~i~td~IvGfPgET~edf~~tl~~~~---~~~~~~~~~f~~ 337 (445)
T PRK14340 261 IHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGVTLSTDLIAGFCGETEEDHRATLSLME---EVRFDSAFMFYY 337 (445)
T ss_pred EEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEeccEEEECCCCCHHHHHHHHHHHH---hcCCCEEeeEEe
Confidence 99999999999999999999999999999999999 9999999999999999999999999987 578999999999
Q ss_pred eecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 338 LVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 338 ~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
.+.|||++++.+. + ..+++...+....+.+.
T Consensus 338 sp~pGT~~~~~~~-~---~v~~~~~~~R~~~l~~l 368 (445)
T PRK14340 338 SVRPGTLAARTLP-D---DVPEEVKKRRLQEIIDL 368 (445)
T ss_pred cCCCCChhhhhCC-C---CCCHHHHHHHHHHHHHH
Confidence 9999999986332 1 25666666666555443
No 33
>PRK07094 biotin synthase; Provisional
Probab=99.89 E-value=1.3e-21 Score=204.48 Aligned_cols=178 Identities=15% Similarity=0.148 Sum_probs=147.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe
Q 008466 161 PYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET 239 (564)
Q Consensus 161 ~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt 239 (564)
+..+++.....+.+.| ++.| |.||+...++.+++.++++.|++..+ +.++ .
T Consensus 71 s~eei~~~~~~~~~~g-----~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~---------------------l~i~--~ 122 (323)
T PRK07094 71 SPEEILECAKKAYELG-----YRTIVLQSGEDPYYTDEKIADIIKEIKKELD---------------------VAIT--L 122 (323)
T ss_pred CHHHHHHHHHHHHHCC-----CCEEEEecCCCCCCCHHHHHHHHHHHHccCC---------------------ceEE--E
Confidence 3445555444555555 4445 56776556788888888888765421 2233 3
Q ss_pred eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHH
Q 008466 240 RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFR 319 (564)
Q Consensus 240 rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~ 319 (564)
++...+++.++.|+++|++++.+|+||+++++++.++++++.++++++++.++++|+.+..++|+|+||||.+++.++++
T Consensus 123 ~~g~~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~ 202 (323)
T PRK07094 123 SLGERSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDIL 202 (323)
T ss_pred ecCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 320 EFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 320 ~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
.+. +++++.+.++++.|.|||||++. .+.+.++...+++.+...+|.
T Consensus 203 ~l~---~l~~~~v~~~~~~P~pgTpl~~~------~~~~~~~~~~~~a~~R~~lp~ 249 (323)
T PRK07094 203 FLK---ELDLDMIGIGPFIPHPDTPLKDE------KGGSLELTLKVLALLRLLLPD 249 (323)
T ss_pred HHH---hCCCCeeeeeccccCCCCCcccC------CCCCHHHHHHHHHHHHHhCcC
Confidence 887 68899999999999999999863 357899999999999998874
No 34
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.89 E-value=1.9e-21 Score=213.40 Aligned_cols=182 Identities=16% Similarity=0.127 Sum_probs=142.0
Q ss_pred hcchHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCCCH------HHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcc
Q 008466 158 RYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPA------DYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATK 231 (564)
Q Consensus 158 ~~~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l~~------~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~ 231 (564)
+..+..+++.++..+...|. -+..+.|.++++... ..+..|++.|.+. .
T Consensus 239 Rsr~~e~Ii~Ei~~l~~~G~----keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~~-~-------------------- 293 (509)
T PRK14327 239 RSRRPEDIIQEVRHLARQGY----KEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRKI-D-------------------- 293 (509)
T ss_pred eeCCHHHHHHHHHHHHHCCC----cEEEEEeeccccCcccccccchHHHHHHHHHHhC-C--------------------
Confidence 45666777777777877763 133456776665432 2355666665431 1
Q ss_pred cEEEEEE-eeCCCCCHHHHHHHHHcC--CCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCC
Q 008466 232 CIGMTIE-TRPDYCLGPHLRQMLSYG--CTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDL 306 (564)
Q Consensus 232 ~~eitiE-trPd~i~~e~L~~L~~~G--~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GL 306 (564)
...+.+. .+|+.++++.++.|+++| |++++||+||+++++|+.|||+||.+++.++++.++++ |+.+.+|+|+|+
T Consensus 294 i~~ir~~s~~P~~i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p~i~i~tdiIvGf 373 (509)
T PRK14327 294 IPRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIPNVALTTDIIVGF 373 (509)
T ss_pred CceEEEeecCcccCCHHHHHHHHhcCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEeeeEEEeC
Confidence 1134444 489999999999999999 68999999999999999999999999999999999998 566778999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 307 PNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 307 Pget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
||||.+++.+|++.+. +++++.+.++++.+.|||+++++. ...+.+..-+.+..+.+.
T Consensus 374 PgET~edf~~Tl~~v~---~l~~d~~~~f~ysprpGT~a~~~~-----~~vp~~vk~~R~~~l~~l 431 (509)
T PRK14327 374 PNETDEQFEETLSLYR---EVGFDHAYTFIYSPREGTPAAKMK-----DNVPMEVKKERLQRLNAL 431 (509)
T ss_pred CCCCHHHHHHHHHHHH---HcCCCeEEEeeeeCCCCCchHhCc-----CCCCHHHHHHHHHHHHHH
Confidence 9999999999999987 578999999999999999998753 235667666666555544
No 35
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.88 E-value=9.8e-22 Score=213.48 Aligned_cols=181 Identities=15% Similarity=0.119 Sum_probs=141.3
Q ss_pred hcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCCCCHH----HHHHHHHHHHHHhcCCCchhhHHHhhhcccCCccc
Q 008466 158 RYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMSLPAD----YRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKC 232 (564)
Q Consensus 158 ~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~l~~~----~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~ 232 (564)
+..+..+++.+...+...| ++.| +.|++++..+.+ .+.++++.+.+.. ..
T Consensus 173 rsr~~e~V~~Ei~~l~~~g-----~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~~~--------------------g~ 227 (437)
T PRK14331 173 RSRRLGSILDEVQWLVDDG-----VKEIHLIGQNVTAYGKDIGDVPFSELLYAVAEID--------------------GV 227 (437)
T ss_pred ccCCHHHHHHHHHHHHHCC-----CeEEEEeeeccccccCCCCCCCHHHHHHHHhcCC--------------------Cc
Confidence 4456667777767777665 4445 678888775432 3445555544311 11
Q ss_pred EEEEEE-eeCCCCCHHHHHHHHHc--CCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCC
Q 008466 233 IGMTIE-TRPDYCLGPHLRQMLSY--GCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLP 307 (564)
Q Consensus 233 ~eitiE-trPd~i~~e~L~~L~~~--G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLP 307 (564)
..+.+. .+|..++++.++.|+++ ||.+|+||+||+++++|+.|||++|.+++.++++.++++ |+.+.+|||+|+|
T Consensus 228 ~~i~~~~~~p~~l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi~i~~d~IvG~P 307 (437)
T PRK14331 228 ERIRFTTGHPRDLDEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDITFSTDIIVGFP 307 (437)
T ss_pred cEEEEeccCcccCCHHHHHHHHcCCccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEecCEEEECC
Confidence 234444 38999999999999998 599999999999999999999999999999999999998 9999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 008466 308 NVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILA 371 (564)
Q Consensus 308 get~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~ 371 (564)
|||.+++.+|++++. +++++.+.++++++.|||+++++.. ..++++..+....+.+
T Consensus 308 gET~ed~~~tl~~l~---~l~~~~i~~f~~sp~pGT~~~~~~~-----~~~~~~~~~r~~~l~~ 363 (437)
T PRK14331 308 TETEEDFEETLDVLK---KVEFEQVFSFKYSPRPGTPAAYMEG-----QEPDEVKTKRMNRLLE 363 (437)
T ss_pred CCCHHHHHHHHHHHH---hcCcceeeeeEecCCCCcchhhCCC-----CCCHHHHHHHHHHHHH
Confidence 999999999999987 5789999999999999999987631 2456666555554444
No 36
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.88 E-value=2e-21 Score=211.34 Aligned_cols=208 Identities=16% Similarity=0.205 Sum_probs=157.8
Q ss_pred EeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-E
Q 008466 108 AVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-L 186 (564)
Q Consensus 108 avmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~ 186 (564)
|.+.-..+||| +|+|| ..|. ..|+ .+..+..+++.+...+...| ++-| +
T Consensus 156 a~l~isrGC~~------~CsFC---------~ip~-~rG~---------~rsr~~e~Iv~Ei~~l~~~G-----~kei~l 205 (449)
T PRK14332 156 AFVTIMRGCNN------FCTFC---------VVPY-TRGR---------ERSRDPKSIVREIQDLQEKG-----IRQVTL 205 (449)
T ss_pred EEEEecCCcCC------CCCCC---------Cccc-ccCC---------cccCCHHHHHHHHHHHHHCC-----CeEEEE
Confidence 33444578985 99999 2332 2332 24566677777777777766 4444 6
Q ss_pred EcCCCCCCCHH--HHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe-eCCCCCHHHHHHHHHcC--CCeEE
Q 008466 187 MGGTFMSLPAD--YRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET-RPDYCLGPHLRQMLSYG--CTRLE 261 (564)
Q Consensus 187 ~GGTpt~l~~~--~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt-rPd~i~~e~L~~L~~~G--~~rvs 261 (564)
.|.+++....+ .+.++++.+.+. .....+.+.+ +|+.++++.++.|+++| |.+++
T Consensus 206 ~~~~~~~y~~~~~~l~~Ll~~l~~~--------------------~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~ 265 (449)
T PRK14332 206 LGQNVNSYKEQSTDFAGLIQMLLDE--------------------TTIERIRFTSPHPKDFPDHLLSLMAKNPRFCPNIH 265 (449)
T ss_pred ecccCCcccCCcccHHHHHHHHhcC--------------------CCcceEEEECCCcccCCHHHHHHHHhCCCccceEE
Confidence 78888877543 233444433221 1122455554 99999999999999998 99999
Q ss_pred EccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeee
Q 008466 262 IGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLV 339 (564)
Q Consensus 262 iGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v 339 (564)
||+||+++++|+.|||+||.+++.++++.++++ |+.+..|||+|+||||.+++.++++++. +++++.+.+|++.+
T Consensus 266 lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td~IvGfPgET~edf~~tl~~v~---~l~~~~~~~f~ys~ 342 (449)
T PRK14332 266 LPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTDIIVGFPNETEEEFEDTLAVVR---EVQFDMAFMFKYSE 342 (449)
T ss_pred ECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEeeCCCCCHHHHHHHHHHHH---hCCCCEEEEEEecC
Confidence 999999999999999999999999999999998 5677789999999999999999999987 68899999999999
Q ss_pred cCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 340 IRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 340 ~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
.|||+.++.+.+ .+++++..+.+..+.++
T Consensus 343 ~~GT~a~~~~~~----~v~~~~~~~R~~~l~~~ 371 (449)
T PRK14332 343 REGTMAKRKLPD----NVPEEVKSARLTKLVDL 371 (449)
T ss_pred CCCChhHHhCcC----CCCHHHHHHHHHHHHHH
Confidence 999999854332 26677777776666554
No 37
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.88 E-value=5.4e-22 Score=216.10 Aligned_cols=205 Identities=16% Similarity=0.167 Sum_probs=151.3
Q ss_pred CccccC-CCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCC
Q 008466 116 CPHIAT-TGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMS 193 (564)
Q Consensus 116 cphIPf-C~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~ 193 (564)
+++|++ |+++|+|| .++ ...|. .+..+..+++.++..+...|. ..| +.|.++..
T Consensus 151 ~i~i~~GC~~~CsFC------~ip----~~rG~---------~rsr~~e~V~~Ei~~l~~~g~-----kei~l~~~~~~~ 206 (448)
T PRK14333 151 WVNVIYGCNERCTYC------VVP----SVRGK---------EQSRTPEAIRAEIEELAAQGY-----KEITLLGQNIDA 206 (448)
T ss_pred EEEhhcCCCCCCCCC------cee----cccCC---------CcccCHHHHHHHHHHHHHCCC-----cEEEEEecccch
Confidence 555666 66799999 332 22332 123445566666666666553 333 44433322
Q ss_pred ------------CCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-eeCCCCCHHHHHHHHHc--CCC
Q 008466 194 ------------LPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE-TRPDYCLGPHLRQMLSY--GCT 258 (564)
Q Consensus 194 ------------l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE-trPd~i~~e~L~~L~~~--G~~ 258 (564)
.....+..+++.+.+. . ....+++. .+|+.++++.++.|+++ ||.
T Consensus 207 yg~d~~~~~p~~~~~~~l~~Ll~~i~~~-~-------------------~~~rir~~~~~p~~~~~eli~~~~~~~~~~~ 266 (448)
T PRK14333 207 YGRDLPGTTPEGRHQHTLTDLLYYIHDV-E-------------------GIERIRFATSHPRYFTERLIKACAELPKVCE 266 (448)
T ss_pred hcCCCCCccccccccccHHHHHHHHHhc-C-------------------CCeEEEECCCChhhhhHHHHHHHhcCCcccc
Confidence 2223566666666541 1 22346664 58999999999999996 599
Q ss_pred eEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEee
Q 008466 259 RLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYP 336 (564)
Q Consensus 259 rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~ 336 (564)
+++||+||+++++|+.|||+||.+++.++++.++++ |+.+..|+|+|+||||.+++.++++++. +++++.+.+++
T Consensus 267 ~l~igiQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~p~i~i~~d~IvGfPgET~edf~~tl~~l~---~~~~~~~~~~~ 343 (448)
T PRK14333 267 HFHIPFQSGDNEILKAMARGYTHEKYRRIIDKIREYMPDASISADAIVGFPGETEAQFENTLKLVE---EIGFDQLNTAA 343 (448)
T ss_pred cccCCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEEeeEEEECCCCCHHHHHHHHHHHH---HcCCCEEeeee
Confidence 999999999999999999999999999999999999 6778899999999999999999999997 57899999999
Q ss_pred eeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 337 TLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 337 l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
++|.|||+++++. ...+.+..-+....+.++
T Consensus 344 ~sp~pGT~~~~~~-----~~v~~~~~~~R~~~l~~~ 374 (448)
T PRK14333 344 YSPRPGTPAALWD-----NQLSEEVKSDRLQRLNHL 374 (448)
T ss_pred eecCCCCchhhCC-----CCCCHHHHHHHHHHHHHH
Confidence 9999999998752 125666666666555543
No 38
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.88 E-value=2.5e-21 Score=210.16 Aligned_cols=184 Identities=13% Similarity=0.126 Sum_probs=141.4
Q ss_pred hcchHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCC-----CHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCccc
Q 008466 158 RYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSL-----PADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKC 232 (564)
Q Consensus 158 ~~~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l-----~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~ 232 (564)
+..+..+++.++..+.+.|. -+.+|.|.++... ....+..+++.+.+. . ..
T Consensus 167 rsr~~e~Iv~Ei~~l~~~g~----kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~~-~-------------------~~ 222 (434)
T PRK14330 167 KSRPMEDILEEVEKLAKQGY----REVTFLGQNVDAYGKDLKDGSSLAKLLEEASKI-E-------------------GI 222 (434)
T ss_pred ccCCHHHHHHHHHHHHHCCC----cEEEEEEecccccccCCCCCccHHHHHHHHHhc-C-------------------Cc
Confidence 45677788877777777663 1333556555432 223455555544321 1 11
Q ss_pred -EEEEEEeeCCCCCHHHHHHHHHcC--CCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCC
Q 008466 233 -IGMTIETRPDYCLGPHLRQMLSYG--CTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLP 307 (564)
Q Consensus 233 -~eitiEtrPd~i~~e~L~~L~~~G--~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLP 307 (564)
.-+....+|+.++++.++.|+++| |.+++||+||+++++|+.|||+|+.+++.++++.+++. |+.+..|+|+|+|
T Consensus 223 ~~~~~~~~~p~~~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d~IvGfP 302 (434)
T PRK14330 223 ERIWFLTSYPTDFSDELIEVIANSPKVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVPDASISSDIIVGFP 302 (434)
T ss_pred eEEEEecCChhhcCHHHHHHHhcCCcccCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECC
Confidence 123345799999999999999998 79999999999999999999999999999999999997 7788899999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 308 NVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 308 get~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
|||.+++.++++++. +++++++.++++++.|||+++++++++ .+.++..+.+..+.+.
T Consensus 303 gET~edf~~tl~fi~---~~~~~~~~~~~~sp~pGT~~~~~~~~~----v~~~~~~~r~~~l~~~ 360 (434)
T PRK14330 303 TETEEDFMETVDLVE---KAQFERLNLAIYSPREGTVAWKYYKDD----VPYEEKVRRMQYLLNL 360 (434)
T ss_pred CCCHHHHHHHHHHHH---hcCCCEEeeeeccCCCCChhhhhCccC----CCHHHHHHHHHHHHHH
Confidence 999999999999987 578999999999999999999865443 4566665555544443
No 39
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.88 E-value=4.3e-21 Score=211.29 Aligned_cols=207 Identities=15% Similarity=0.186 Sum_probs=153.4
Q ss_pred EeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEEE
Q 008466 108 AVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILM 187 (564)
Q Consensus 108 avmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~~ 187 (564)
+.+....+||| +|+|| ..+.. .|. .+..+..+++.++..+...|. -+.+|.
T Consensus 159 a~v~isrGCp~------~CsFC---------~ip~~-rG~---------~rsr~~e~Vv~Ei~~l~~~g~----~ei~l~ 209 (502)
T PRK14326 159 AWVSISVGCNN------TCTFC---------IVPSL-RGK---------EKDRRPGDILAEVQALVDEGV----LEVTLL 209 (502)
T ss_pred EEEEEccCCCC------CCccC---------ceecc-CCC---------cccCCHHHHHHHHHHHHHCCC----ceEEEE
Confidence 44445678995 99999 23332 232 234555777777777777662 233456
Q ss_pred cCCCCCC-----CHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcC--CCeE
Q 008466 188 GGTFMSL-----PADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYG--CTRL 260 (564)
Q Consensus 188 GGTpt~l-----~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G--~~rv 260 (564)
|.++++. +...+.++++.+... .+ ...+.|+. .+|+.++++.|+.|+++| |.++
T Consensus 210 d~n~~~yG~d~~~~~~l~~Ll~~l~~i-~~-----------------l~~ir~~~-~~p~~~~~ell~~m~~~g~~~~~l 270 (502)
T PRK14326 210 GQNVNAYGVSFGDRGAFSKLLRACGEI-DG-----------------LERVRFTS-PHPAEFTDDVIEAMAETPNVCPQL 270 (502)
T ss_pred eecccccccCCCCHHHHHHHHHHHHhc-CC-----------------ccEEEEec-cChhhCCHHHHHHHHhcCCcCCcE
Confidence 7776653 334555555554321 10 01134432 599999999999999998 9999
Q ss_pred EEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeee
Q 008466 261 EIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTL 338 (564)
Q Consensus 261 siGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~ 338 (564)
+||+||+++++|+.|||+|+.+++.++++.++++ |+.+..|||+|+||||.+++.++++++. +++++.+.++++.
T Consensus 271 ~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~~~i~i~~~~IvGfPgET~edf~~Tl~~i~---~~~~~~~~~f~~s 347 (502)
T PRK14326 271 HMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAMPDAAITTDIIVGFPGETEEDFQATLDVVR---EARFSSAFTFQYS 347 (502)
T ss_pred EeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEEEEEECCCCCHHHHHHHHHHHH---HcCCCEEEEEeec
Confidence 9999999999999999999999999999999996 7788999999999999999999999987 5778999999999
Q ss_pred ecCCChhHHHHHcCCCCCCCHHHHHHHHHHHH
Q 008466 339 VIRGTGLYELWKTGRYRNYPPEQLVDIVARIL 370 (564)
Q Consensus 339 v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~ 370 (564)
+.|||+++++.. ..+.+...+.+..+.
T Consensus 348 p~pGT~~~~~~~-----~v~~~v~~~R~~~l~ 374 (502)
T PRK14326 348 KRPGTPAAEMEG-----QLPKAVVQERYERLV 374 (502)
T ss_pred CCCCChHHhCcC-----CCCHHHHHHHHHHHH
Confidence 999999997632 245555555554443
No 40
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.88 E-value=3e-21 Score=210.13 Aligned_cols=206 Identities=17% Similarity=0.177 Sum_probs=155.5
Q ss_pred ecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEEEcC
Q 008466 110 MSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGG 189 (564)
Q Consensus 110 mt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~~GG 189 (564)
+....+||| +|+|| ..+. ..|. .+..+..+++.+...+.+.|.. +.+|.|.
T Consensus 151 i~isrGCp~------~CsFC---------~~p~-~~G~---------~~sr~~e~Iv~Ei~~l~~~g~~----ei~l~d~ 201 (444)
T PRK14325 151 VSIMEGCDK------YCTFC---------VVPY-TRGE---------EVSRPVDDVLAEVAQLAEQGVR----EITLLGQ 201 (444)
T ss_pred EEhhhCCCC------CCCcc---------ccCc-ccCC---------cccCCHHHHHHHHHHHHHCCCc----EEEEEee
Confidence 333478996 99999 2222 2232 1245667777777777776631 2335666
Q ss_pred CCCCCC-------HHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe-eCCCCCHHHHHHHHHcC--CCe
Q 008466 190 TFMSLP-------ADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET-RPDYCLGPHLRQMLSYG--CTR 259 (564)
Q Consensus 190 Tpt~l~-------~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt-rPd~i~~e~L~~L~~~G--~~r 259 (564)
+++... ...+.++++.|.+. + ....+.+.+ +|+.++++.++.|+++| |.+
T Consensus 202 ~~~~y~~~~~~~~~~~l~~Ll~~l~~~-~-------------------~~~~ir~~~~~p~~~~~ell~~l~~~~~~~~~ 261 (444)
T PRK14325 202 NVNAYRGEGPDGEIADFAELLRLVAAI-D-------------------GIERIRYTTSHPRDFTDDLIEAYADLPKLVPF 261 (444)
T ss_pred ccccccCCCCCCCcchHHHHHHHHHhc-C-------------------CccEEEEccCCcccCCHHHHHHHHcCCcccCc
Confidence 665542 23566666665431 1 112355554 89999999999999986 999
Q ss_pred EEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeee
Q 008466 260 LEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPT 337 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l 337 (564)
++||+||+++++|+.|||+++.+++.++++.++++ |+.+..|||+|+||||.+++.++++++. +++++.+.++++
T Consensus 262 l~igiqSgs~~vLk~m~R~~~~~~~~~~i~~lr~~~~gi~v~~~~IvG~PgET~ed~~~tl~~i~---~~~~~~~~~~~~ 338 (444)
T PRK14325 262 LHLPVQSGSDRILKAMNRGHTALEYKSIIRKLRAARPDIAISSDFIVGFPGETDEDFEATMKLIE---DVGFDQSFSFIY 338 (444)
T ss_pred eeccCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCHHHHHHHHHHHH---hcCCCeeeeeec
Confidence 99999999999999999999999999999999998 7788899999999999999999999987 578999999999
Q ss_pred eecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 338 LVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 338 ~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
.+.|||+++++. ...+.+...+....+.+.
T Consensus 339 sp~pGT~~~~~~-----~~v~~~~~~~r~~~l~~~ 368 (444)
T PRK14325 339 SPRPGTPAADLP-----DDVPEEVKKERLQRLQAL 368 (444)
T ss_pred cCCCCCchhhCC-----CCCCHHHHHHHHHHHHHH
Confidence 999999999762 235667766666655543
No 41
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.88 E-value=5.5e-21 Score=208.44 Aligned_cols=186 Identities=16% Similarity=0.138 Sum_probs=143.3
Q ss_pred cchHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCCCH-------HHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcc
Q 008466 159 YNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPA-------DYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATK 231 (564)
Q Consensus 159 ~~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l~~-------~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~ 231 (564)
..+..+++.++..+.+.|. -+.+|.|.++++... ..+.++++.|.+.... ...
T Consensus 180 sr~~e~Vv~Ei~~l~~~G~----~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~~~~~~----------------~~~ 239 (455)
T PRK14335 180 SRDLDAILQEIDVLSEKGV----REITLLGQNVNSYRGRDREGNIVTFPQLLRHIVRRAEV----------------TDQ 239 (455)
T ss_pred cCCHHHHHHHHHHHHHCCC----eEEEEEeecccccccccccCCccCHHHHHHHHHHhhcc----------------cCC
Confidence 4456666666666777663 134467877776531 1355566665432210 011
Q ss_pred cEEEEE-EeeCCCCCHHHHHHHHHc--CCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCC
Q 008466 232 CIGMTI-ETRPDYCLGPHLRQMLSY--GCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDL 306 (564)
Q Consensus 232 ~~eiti-EtrPd~i~~e~L~~L~~~--G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GL 306 (564)
...+.+ .++|+.++++.++.|+++ ||++++||+||+++++|+.|||+++.+++.++++.++++ |+.+..|+|+|+
T Consensus 240 i~~ir~~s~~p~~i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m~R~~t~e~~~~~v~~ir~~~pgi~i~~d~IvGf 319 (455)
T PRK14335 240 IRWIRFMSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREHYLSLVGKLKASIPNVALSTDILIGF 319 (455)
T ss_pred ceEEEEeecCcccCCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeC
Confidence 234554 469999999999999984 899999999999999999999999999999999999998 999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 307 PNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 307 Pget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
||||.+++.+|++++. +++++.+.+++++|.|||+++++- ...+.+...+....+.++
T Consensus 320 PgET~edf~~Tl~~i~---~l~~~~~~~~~~sp~pGT~~~~~~-----~~v~~~~k~~R~~~l~~~ 377 (455)
T PRK14335 320 PGETEEDFEQTLDLMR---EVEFDSAFMYHYNPREGTPAYDFP-----DRIPDEVKIARLQRVIAL 377 (455)
T ss_pred CCCCHHHHHHHHHHHH---hcCCCeEEEEEecCCCCCchhhCC-----CCCCHHHHHHHHHHHHHH
Confidence 9999999999999986 578999999999999999998742 136677776666655554
No 42
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.88 E-value=4.1e-21 Score=207.29 Aligned_cols=209 Identities=16% Similarity=0.204 Sum_probs=157.8
Q ss_pred EeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEEE
Q 008466 108 AVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILM 187 (564)
Q Consensus 108 avmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~~ 187 (564)
|.+.-..+||| +|+|| ..+. ..|+ .+..+..+++.+...+.+.|. -+.++.
T Consensus 126 a~i~i~rGC~~------~CsFC---------~ip~-~rG~---------~rsrs~e~Iv~Ei~~l~~~G~----~ei~l~ 176 (418)
T PRK14336 126 ANVTIMQGCDN------FCTYC---------VVPY-RRGR---------EKSRSIAEIGCEVAELVRRGS----REVVLL 176 (418)
T ss_pred EEEEeccCCCC------CCccC---------Cccc-cCCC---------CccCCHHHHHHHHHHHHHCCC----eEEEEE
Confidence 33444578985 99999 2222 1232 245667777777777777662 234467
Q ss_pred cCCCCCCCH-----HHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-eeCCCCCHHHHHHHHHc--CCCe
Q 008466 188 GGTFMSLPA-----DYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE-TRPDYCLGPHLRQMLSY--GCTR 259 (564)
Q Consensus 188 GGTpt~l~~-----~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE-trPd~i~~e~L~~L~~~--G~~r 259 (564)
|++++.... ..+..+++.+.+ .. ....+.+. .+|+.++++.++.|+++ +|.+
T Consensus 177 ~~~~~~yg~d~~~~~~l~~Ll~~l~~-~~-------------------~~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~ 236 (418)
T PRK14336 177 GQNVDSYGHDLPEKPCLADLLSALHD-IP-------------------GLLRIRFLTSHPKDISQKLIDAMAHLPKVCRS 236 (418)
T ss_pred ecCccccccCCCCcccHHHHHHHHHh-cC-------------------CccEEEEeccChhhcCHHHHHHHHhcCccCCc
Confidence 888776432 235556665543 11 12346665 49999999999999996 4999
Q ss_pred EEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeee
Q 008466 260 LEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPT 337 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l 337 (564)
+++|+||+++++|+.|||+|+.+++.++++.++++ |+.+..|||+|+||||.+++.++++++. +++++.+.++++
T Consensus 237 l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~i~~d~IvGfPGET~edf~~tl~fi~---~~~~~~~~v~~y 313 (418)
T PRK14336 237 LSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAMPDISLQTDLIVGFPSETEEQFNQSYKLMA---DIGYDAIHVAAY 313 (418)
T ss_pred eecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEEEEEECCCCCHHHHHHHHHHHH---hcCCCEEEeeec
Confidence 99999999999999999999999999999999998 9999999999999999999999999986 578999999999
Q ss_pred eecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 338 LVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 338 ~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
.+.|||++++.+. + ..+.+...+....+.+.
T Consensus 314 sp~pGT~a~~~~~-~---~v~~~~k~~R~~~l~~~ 344 (418)
T PRK14336 314 SPRPQTVAARDMA-D---DVPVIEKKRRLKLIEDL 344 (418)
T ss_pred CCCCCChhHhhCc-c---CCCHHHHHHHHHHHHHH
Confidence 9999999996442 1 25666666665544443
No 43
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=99.87 E-value=2.3e-21 Score=210.21 Aligned_cols=207 Identities=18% Similarity=0.239 Sum_probs=155.8
Q ss_pred EEeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-
Q 008466 107 VAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI- 185 (564)
Q Consensus 107 vavmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I- 185 (564)
.+.+...++||| +|+||. .+.. .|. .+..+..+++.++..+.+.| ++.|
T Consensus 140 ~~~i~~srGC~~------~CsfC~---------~~~~-~g~---------~r~r~~e~Vv~Ei~~l~~~g-----~~ei~ 189 (429)
T TIGR00089 140 RAFLKIQEGCDK------FCTYCI---------VPYA-RGR---------ERSRPPEDILEEVKELVSKG-----VKEIV 189 (429)
T ss_pred EEEEEHHhCcCC------CCCcCc---------eecc-cCC---------CCCCCHHHHHHHHHHHHHCC-----CceEE
Confidence 455556688996 999992 2222 221 24556667777777777766 3334
Q ss_pred EEcCCCCCCCH-----HHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-eeCCCCCHHHHHHHHHcC--C
Q 008466 186 LMGGTFMSLPA-----DYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE-TRPDYCLGPHLRQMLSYG--C 257 (564)
Q Consensus 186 ~~GGTpt~l~~-----~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE-trPd~i~~e~L~~L~~~G--~ 257 (564)
|.|.+++.... ..+.++++.+.+ .+ ....+.+. .+|+.++++.++.|+++| |
T Consensus 190 l~~~~~~~yg~d~~~~~~l~~Ll~~l~~-~~-------------------g~~~i~~~~~~p~~i~~ell~~m~~~~~~~ 249 (429)
T TIGR00089 190 LLGQNVGAYGKDLKGETNLADLLRELSK-ID-------------------GIERIRFGSSHPDDVTDDLIELIAENPKVC 249 (429)
T ss_pred EEeeccccccCCCCCCcCHHHHHHHHhc-CC-------------------CCCEEEECCCChhhcCHHHHHHHHhCCCcc
Confidence 56766655421 245566665543 11 12245565 499999999999999995 9
Q ss_pred CeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcC--CcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEe
Q 008466 258 TRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAG--FKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIY 335 (564)
Q Consensus 258 ~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G--~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy 335 (564)
.++++|+||+++++|+.|||+|+.+++.++++.++++| +.+..|||+|+||||.+++.++++++. +++++++.++
T Consensus 250 ~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i~i~~~~IvG~PgET~ed~~~tl~~i~---~~~~~~~~~~ 326 (429)
T TIGR00089 250 KHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPDAAITTDIIVGFPGETEEDFEETLDLVE---EVKFDKLHSF 326 (429)
T ss_pred CceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCHHHHHHHHHHHH---hcCCCEeecc
Confidence 99999999999999999999999999999999999998 778899999999999999999999997 5789999999
Q ss_pred eeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 008466 336 PTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILA 371 (564)
Q Consensus 336 ~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~ 371 (564)
++++.|||+++++.. ..+.+...+.+..+.+
T Consensus 327 ~~sp~pgT~~~~~~~-----~v~~~~~~~r~~~l~~ 357 (429)
T TIGR00089 327 IYSPRPGTPAADMKD-----QVPEEVKKERLERLIA 357 (429)
T ss_pred ccCCCCCCchhhCCC-----CCCHHHHHHHHHHHHH
Confidence 999999999987531 2456665555554443
No 44
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.87 E-value=4.1e-21 Score=207.48 Aligned_cols=209 Identities=11% Similarity=0.114 Sum_probs=156.7
Q ss_pred EEeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEE
Q 008466 107 VAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFIL 186 (564)
Q Consensus 107 vavmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~ 186 (564)
.|.+....+||| +|+|| ..+. ..|+ .+..+..+++.++..+...|. -+.++
T Consensus 128 ~a~i~isrGC~~------~CsFC---------~ip~-~rG~---------~~sr~~e~I~~Ei~~l~~~G~----keI~l 178 (420)
T PRK14339 128 KSLVNISIGCDK------KCTYC---------IVPH-TRGK---------EISIPMDLILKEAEKAVNNGA----KEIFL 178 (420)
T ss_pred EEEEEecCCCCC------CCCcC---------Cccc-ccCC---------CCCCCHHHHHHHHHHHHHCCC----cEEEE
Confidence 466666788996 99999 2332 2332 123466777777777777663 13335
Q ss_pred EcCCCCCCCH--------HHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-eeCCCCCHHHHHHHHHc--
Q 008466 187 MGGTFMSLPA--------DYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE-TRPDYCLGPHLRQMLSY-- 255 (564)
Q Consensus 187 ~GGTpt~l~~--------~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE-trPd~i~~e~L~~L~~~-- 255 (564)
.|.+++.... ..+.++++.+.+ +. ....+.+. ++|+.++++.|+.|+++
T Consensus 179 ~~~~~~~yg~d~~~~~~~~~l~~Ll~~l~~-~~-------------------g~~~ir~~s~~p~~~~~ell~~~~~~~~ 238 (420)
T PRK14339 179 LGQNVNNYGKRFSSEHEKVDFSDLLDKLSE-IE-------------------GLERIRFTSPHPLHMDDKFLEEFAKNPK 238 (420)
T ss_pred eeeccccccCCCcCCcccccHHHHHHHHhc-CC-------------------CccEEEECCCChhhcCHHHHHHHHcCCC
Confidence 6666654322 235556555542 11 11234554 69999999999999998
Q ss_pred CCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEE
Q 008466 256 GCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLK 333 (564)
Q Consensus 256 G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~ 333 (564)
||..++||+||+++++|+.|||+++.+++.++++.++++ |+.+..|+|+|+||||.+++.++++++. +++++++.
T Consensus 239 ~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~~p~i~i~~d~IvGfPgETeedf~~Tl~fl~---~l~~~~~~ 315 (420)
T PRK14339 239 ICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVPEVSISTDIIVGFPGESDKDFEDTMDVLE---KVRFEQIF 315 (420)
T ss_pred ccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHH---hcCCCEEe
Confidence 599999999999999999999999999999999999998 7788899999999999999999999986 57889999
Q ss_pred EeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 334 IYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 334 iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
++++++.||||++++- + ..+.+...+....+.+.
T Consensus 316 ~f~~sp~pGT~a~~~~--~---~v~~~~k~~R~~~l~~~ 349 (420)
T PRK14339 316 SFKYSPRPLTEAAAWK--N---QVDEEVASERLERLQNR 349 (420)
T ss_pred eEecCCCCCCchhhCC--C---CCCHHHHHHHHHHHHHH
Confidence 9999999999998752 1 35677776666655554
No 45
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.87 E-value=6.7e-21 Score=207.99 Aligned_cols=180 Identities=17% Similarity=0.215 Sum_probs=141.5
Q ss_pred hcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCCCC-----HHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcc
Q 008466 158 RYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMSLP-----ADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATK 231 (564)
Q Consensus 158 ~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~l~-----~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~ 231 (564)
+..+..+++.++..+.+.| +..| |.|.+++... ...+..|++.+.+. . .
T Consensus 182 rsr~~e~Il~ei~~l~~~G-----~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~-~-------------------g 236 (459)
T PRK14338 182 RSRPLAEIVEEVRRIAARG-----AKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEI-P-------------------G 236 (459)
T ss_pred ccCCHHHHHHHHHHHHHCC-----CeEEEEeeecCCCcccccCChHHHHHHHHHHHhc-C-------------------C
Confidence 3456677777777777766 4444 6676655532 33466666666542 1 1
Q ss_pred cEEEEEE-eeCCCCCHHHHHHHHHc--CCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCC
Q 008466 232 CIGMTIE-TRPDYCLGPHLRQMLSY--GCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDL 306 (564)
Q Consensus 232 ~~eitiE-trPd~i~~e~L~~L~~~--G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GL 306 (564)
...+.+. ++|+.++++.++.|+++ ||.+++||+||+++++|+.|+|+|+.+++.++++.+++. |+.+..|+|+|+
T Consensus 237 i~~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i~~d~IvG~ 316 (459)
T PRK14338 237 LERLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIPDVSLTTDIIVGH 316 (459)
T ss_pred cceEEEEecChhhcCHHHHHHHhcccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEEC
Confidence 1234444 59999999999999996 599999999999999999999999999999999999998 788889999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHH
Q 008466 307 PNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIV 366 (564)
Q Consensus 307 Pget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~ 366 (564)
||||.+++.++++.+. +++++.+.++++.+.|||+++++..++.| .+++++..+..
T Consensus 317 PgET~ed~~~ti~~l~---~l~~~~v~i~~ysp~pGT~~~~~~~~~~~-~v~~~~~~~R~ 372 (459)
T PRK14338 317 PGETEEQFQRTYDLLE---EIRFDKVHIAAYSPRPGTLAAEMEDDPAL-AVPPEEKQRRR 372 (459)
T ss_pred CCCCHHHHHHHHHHHH---HcCCCEeEEEecCCCCCChhhhCcCCccC-CCCHHHHHHHH
Confidence 9999999999999987 57899999999999999999988666666 35555554443
No 46
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.87 E-value=7.1e-21 Score=206.88 Aligned_cols=206 Identities=16% Similarity=0.186 Sum_probs=153.0
Q ss_pred ecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEEEcC
Q 008466 110 MSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGG 189 (564)
Q Consensus 110 mt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~~GG 189 (564)
+....+||| +|.|| . .+. ..|. .+..+..+++.+...+.+.|. -+.+|.|+
T Consensus 151 i~i~rGC~~------~CsfC------~---~p~-~~g~---------~Rsr~~e~Iv~Ei~~l~~~G~----~ei~l~~~ 201 (439)
T PRK14328 151 VTIMYGCNN------FCTYC------I---VPY-VRGR---------ERSRKPEDIIAEIKELVSEGY----KEVTLLGQ 201 (439)
T ss_pred EEHHhCcCC------CCCCC------C---ccc-ccCC---------cccCCHHHHHHHHHHHHHCCC----cEEEEecc
Confidence 344467885 99999 2 222 2232 244566667766666777663 23446677
Q ss_pred CCCCCCH-----HHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-eeCCCCCHHHHHHHHHcC--CCeEE
Q 008466 190 TFMSLPA-----DYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE-TRPDYCLGPHLRQMLSYG--CTRLE 261 (564)
Q Consensus 190 Tpt~l~~-----~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE-trPd~i~~e~L~~L~~~G--~~rvs 261 (564)
+++.... ..+..+++.+.+ +. ....+.+. .+|+.++++.++.|+++| |.+++
T Consensus 202 ~~~~yg~d~~~~~~l~~Ll~~l~~-~~-------------------~~~~ir~~~~~P~~i~~ell~~l~~~~~~~~~l~ 261 (439)
T PRK14328 202 NVNSYGKDLEEKIDFADLLRRVNE-ID-------------------GLERIRFMTSHPKDLSDDLIEAIADCDKVCEHIH 261 (439)
T ss_pred ccCcCCcCCCCCcCHHHHHHHHHh-cC-------------------CCcEEEEecCChhhcCHHHHHHHHhCCCcCceee
Confidence 7665421 235556665543 11 11234444 599999999999999996 99999
Q ss_pred EccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeee
Q 008466 262 IGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLV 339 (564)
Q Consensus 262 iGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v 339 (564)
+|+||+++++|+.|||+|+.+++.++++.++++ ++.+..|+|+|+||||.+++.++++++. +++++.+.++++.+
T Consensus 262 iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d~IvG~PgET~ed~~~tl~~i~---~l~~~~~~~~~~sp 338 (439)
T PRK14328 262 LPVQSGSNRILKKMNRHYTREYYLELVEKIKSNIPDVAITTDIIVGFPGETEEDFEETLDLVK---EVRYDSAFTFIYSK 338 (439)
T ss_pred eCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHHHHHH---hcCCCcccceEecC
Confidence 999999999999999999999999999999998 6667889999999999999999999986 57899999999999
Q ss_pred cCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 340 IRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 340 ~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
.|||+++++. ...+.+...+....+.+.
T Consensus 339 ~pGT~~~~~~-----~~v~~~~~~~r~~~l~~~ 366 (439)
T PRK14328 339 RKGTPAAKME-----DQVPEDVKHERFNRLVEL 366 (439)
T ss_pred CCCChhhhCC-----CCCCHHHHHHHHHHHHHH
Confidence 9999998752 235666666666555543
No 47
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=99.87 E-value=1.4e-20 Score=204.56 Aligned_cols=182 Identities=15% Similarity=0.126 Sum_probs=140.1
Q ss_pred hcchHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCC-CH------HHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCc
Q 008466 158 RYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSL-PA------DYRDYFIRNLHDALSGHTSANVEEAVTYSEHGAT 230 (564)
Q Consensus 158 ~~~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l-~~------~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~ 230 (564)
+..+..+++.+...+.+.|. -+.++.|.+++.. .. ..+..+++.|.+. .
T Consensus 172 rsr~~e~I~~Ei~~l~~~g~----~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l~~~-~------------------- 227 (438)
T TIGR01574 172 ISRPFDDILQEVQKLAEKGV----REITLLGQNVNAYRGKDFEGKTMDFSDLLRELSTI-D------------------- 227 (438)
T ss_pred cccCHHHHHHHHHHHHHcCC----eEEEEEecccCCccCCCCCCCcccHHHHHHHHHhc-C-------------------
Confidence 34566677777777777663 2334567666655 11 2355566655431 1
Q ss_pred ccEEEEEE-eeCCCCCHHHHHHHHHcC--CCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecC
Q 008466 231 KCIGMTIE-TRPDYCLGPHLRQMLSYG--CTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPD 305 (564)
Q Consensus 231 ~~~eitiE-trPd~i~~e~L~~L~~~G--~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~G 305 (564)
....+.+. .+|+.++++.++.|+++| |.++++|+||+++++|+.|||+|+.+++.++++.++++ |+.+..|+|+|
T Consensus 228 ~~~~ir~~~~~p~~l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~~~~i~i~~d~IvG 307 (438)
T TIGR01574 228 GIERIRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAACPNVSISTDIIVG 307 (438)
T ss_pred CceEEEEecCCcccCCHHHHHHHHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEeeCEEEe
Confidence 12234554 599999999999999999 99999999999999999999999999999999999998 67788899999
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 008466 306 LPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILA 371 (564)
Q Consensus 306 LPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~ 371 (564)
+||||.+++.++++++. +++++++.++++.+.|||+++++. + ..+.++..+.+..+.+
T Consensus 308 ~PgEt~ed~~~tl~~i~---~~~~~~~~~~~~sp~pGT~~~~~~--~---~v~~~~~~~r~~~l~~ 365 (438)
T TIGR01574 308 FPGETEEDFEETLDLLR---EVEFDSAFSFIYSPRPGTPAADMP--D---QIPEEIKKRRLQRLQA 365 (438)
T ss_pred CCCCCHHHHHHHHHHHH---hcCCCeeeeEEecCCCCCchhhCC--C---CCCHHHHHHHHHHHHH
Confidence 99999999999999987 577999999999999999998752 1 2456666555554444
No 48
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=99.85 E-value=3.6e-20 Score=200.91 Aligned_cols=207 Identities=15% Similarity=0.146 Sum_probs=153.1
Q ss_pred EeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEEE
Q 008466 108 AVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILM 187 (564)
Q Consensus 108 avmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~~ 187 (564)
+.+....+||| +|+||. .+.. .|+ .+..+..+++.++.++.+.|. -+.+|.
T Consensus 137 ~~i~~srGC~~------~CsfC~---------~~~~-~G~---------~r~r~~e~Vv~Ei~~l~~~g~----k~i~~~ 187 (430)
T TIGR01125 137 AYLKVAEGCNR------RCAFCI---------IPSI-RGK---------LRSRPIEEILKEAERLVDQGV----KEIILI 187 (430)
T ss_pred EEEEEccCCCC------CCCcCC---------eecc-cCC---------ceecCHHHHHHHHHHHHHCCC----cEEEEE
Confidence 44556678996 999992 2222 232 244556677777777777663 133344
Q ss_pred cCCCCCC-----CHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEE-EeeCCCCCHHHHHHHHHcC--CCe
Q 008466 188 GGTFMSL-----PADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTI-ETRPDYCLGPHLRQMLSYG--CTR 259 (564)
Q Consensus 188 GGTpt~l-----~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eiti-EtrPd~i~~e~L~~L~~~G--~~r 259 (564)
|.+.+.. +..++.+|++.|.+. + ....+++ .++|+.++++.++.|+++| |..
T Consensus 188 ~~d~~~~g~d~~~~~~l~~Ll~~i~~~-~-------------------~i~~~r~~~~~p~~~~~ell~~~~~~~~~~~~ 247 (430)
T TIGR01125 188 AQDTTAYGKDLYRESKLVDLLEELGKV-G-------------------GIYWIRMHYLYPDELTDDVIDLMAEGPKVLPY 247 (430)
T ss_pred eECCCccccCCCCcccHHHHHHHHHhc-C-------------------CccEEEEccCCcccCCHHHHHHHhhCCcccCc
Confidence 4333322 245677777776542 1 0112344 3699999999999999996 899
Q ss_pred EEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeee
Q 008466 260 LEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPT 337 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l 337 (564)
+.||+||+++++|+.|||+++.+++.++++.++++ |+.+..++|+|+||||.+++.++++++. +++++.+.++++
T Consensus 248 l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i~i~~~~I~G~PgET~e~~~~t~~fl~---~~~~~~~~~~~~ 324 (430)
T TIGR01125 248 LDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCPDAVLRTTFIVGFPGETEEDFQELLDFVE---EGQFDRLGAFTY 324 (430)
T ss_pred eEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCCCCeEeEEEEEECCCCCHHHHHHHHHHHH---hcCCCEEeeeec
Confidence 99999999999999999999999999999999998 4557789999999999999999999986 578999999999
Q ss_pred eecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 008466 338 LVIRGTGLYELWKTGRYRNYPPEQLVDIVARILA 371 (564)
Q Consensus 338 ~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~ 371 (564)
+|.|||+++.+- + ..+.++..+.+..+..
T Consensus 325 sp~pGT~~~~~~--~---~i~~~~~~~r~~~l~~ 353 (430)
T TIGR01125 325 SPEEGTDAFALP--D---QVPEEVKEERLERLMQ 353 (430)
T ss_pred cCCCCCccccCC--C---CCCHHHHHHHHHHHHH
Confidence 999999998641 1 2456666555554443
No 49
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.85 E-value=1.6e-19 Score=174.08 Aligned_cols=162 Identities=27% Similarity=0.379 Sum_probs=142.8
Q ss_pred cEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCe
Q 008466 181 KVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTR 259 (564)
Q Consensus 181 kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~r 259 (564)
.++.+ ++||+|+..+.+.+.++++.+++.... .....+++.|++..++++.++.|+++|+++
T Consensus 51 ~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~ 113 (216)
T smart00729 51 LVGTVFIGGGTPTLLSPEQLEELLEAIREILGL-----------------ADDVEITIETRPGTLTEELLEALKEAGVNR 113 (216)
T ss_pred ceeEEEECCCCCCCCCHHHHHHHHHHHHHhCCC-----------------CCCeEEEEEeCcccCCHHHHHHHHHcCCCe
Confidence 35666 679999999988888999988875431 124679999999999999999999999999
Q ss_pred EEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcC-CcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeee
Q 008466 260 LEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAG-FKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTL 338 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G-~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~ 338 (564)
+.++++|+++++++.++++++.+++.++++.++++| +.+..++|+|+|+++.+++.+.++.+. +++++.+.++++.
T Consensus 114 i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~ 190 (216)
T smart00729 114 VSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFEETLKLLK---ELGPDRVSIFPLS 190 (216)
T ss_pred EEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHhCCcceEEeEEecCCCCCHHHHHHHHHHHH---HcCCCeEEeeeee
Confidence 999999999999999999999999999999999999 889999999999999999999998876 5789999999999
Q ss_pred ecCCChhHHHHHcCCCCCCCHHHHHH
Q 008466 339 VIRGTGLYELWKTGRYRNYPPEQLVD 364 (564)
Q Consensus 339 v~~GT~L~~~~~~G~~~~~~~ee~~~ 364 (564)
+.|||++++++.+ +.+++.++.++
T Consensus 191 p~~~t~~~~~~~~--~~~~~~~~~~~ 214 (216)
T smart00729 191 PRPGTPLAKLYKR--LKPPDKEERLE 214 (216)
T ss_pred eCCCChHHHhccc--CCCCChhhhhh
Confidence 9999999998866 66777776654
No 50
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.85 E-value=5.1e-20 Score=200.50 Aligned_cols=182 Identities=14% Similarity=0.099 Sum_probs=139.7
Q ss_pred hcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCCCCH------HHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCc
Q 008466 158 RYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMSLPA------DYRDYFIRNLHDALSGHTSANVEEAVTYSEHGAT 230 (564)
Q Consensus 158 ~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~l~~------~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~ 230 (564)
+..+..+++.+...+...| ++-| |.|.+++.+.. ..+..+++.|.+. .
T Consensus 175 rsr~~e~Iv~Ei~~l~~~G-----~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~~~-~------------------- 229 (446)
T PRK14337 175 KSRSSAAVLDECRALVDRG-----AREITLLGQNVNSYGQDKHGDGTSFAQLLHKVAAL-P------------------- 229 (446)
T ss_pred eeCCHHHHHHHHHHHHHCC-----CeEEEEEecCccccccCCCCCCccHHHHHHHHHhc-C-------------------
Confidence 4566677777777777766 4444 66766655421 2345555555431 1
Q ss_pred ccEEEEEE-eeCCCCCHHHHHHHHHc--CCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecC
Q 008466 231 KCIGMTIE-TRPDYCLGPHLRQMLSY--GCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPD 305 (564)
Q Consensus 231 ~~~eitiE-trPd~i~~e~L~~L~~~--G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~G 305 (564)
....+.+. .+|+.++++.++.|+++ ||.+++||+||+++++|+.|||+|+.+++.++++.++++ |+.+..|||+|
T Consensus 230 g~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~~~i~i~~d~IvG 309 (446)
T PRK14337 230 GLERLRFTTPHPKDIAPEVIEAFGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAARPDIALTTDLIVG 309 (446)
T ss_pred CCcEEEEccCCcccCCHHHHHHHHhCCcccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEE
Confidence 11123443 69999999999999995 599999999999999999999999999999999999998 57788999999
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 306 LPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 306 LPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
+||||.+++.++++++. +++++.+.++++.+.|||+.+.+- ...+++...+....+.+.
T Consensus 310 ~PgET~ed~~~tl~~l~---~~~~~~~~~f~ysp~pgT~a~~~~-----~~v~~~vk~~R~~~l~~~ 368 (446)
T PRK14337 310 FPGETEEDFEQTLEAMR---TVGFASSFSFCYSDRPGTRAEMLP-----GKVPEEVKSARLARLQEL 368 (446)
T ss_pred CCCCCHHHHHHHHHHHH---hcCCCeeEEEecCCCCCCccccCC-----CCCCHHHHHHHHHHHHHH
Confidence 99999999999999987 577899999999999999988641 125666766666555544
No 51
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=99.83 E-value=1.7e-19 Score=194.94 Aligned_cols=206 Identities=15% Similarity=0.187 Sum_probs=150.5
Q ss_pred EEeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-
Q 008466 107 VAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI- 185 (564)
Q Consensus 107 vavmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I- 185 (564)
.+.+....+||| +|+||. .+. ..|. .+..+..+++.+...+.+.| ++.|
T Consensus 134 ~~~i~isrGC~~------~CsfC~---------ip~-~~G~---------~rsr~~e~Vl~Ei~~l~~~G-----~~ei~ 183 (420)
T TIGR01578 134 IEIIPINQGCLG------NCSYCI---------TKH-ARGK---------LASYPPEKIVEKARQLVAEG-----CKEIW 183 (420)
T ss_pred EEEEEEccCCCC------CCCCCc---------ccc-CCCC---------cccCCHHHHHHHHHHHHHCC-----CeEEE
Confidence 456666788996 999992 222 2222 24456677777777777776 4444
Q ss_pred EEcCCCCCCCH---HHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-eeCC---CCCHHHHHHHHHcC-C
Q 008466 186 LMGGTFMSLPA---DYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE-TRPD---YCLGPHLRQMLSYG-C 257 (564)
Q Consensus 186 ~~GGTpt~l~~---~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE-trPd---~i~~e~L~~L~~~G-~ 257 (564)
+.|.+.+.+.. ..+.++++.+.+ +. ....+.+. .+|. .++++.++.|+..+ |
T Consensus 184 l~g~d~~~yg~d~~~~l~~Ll~~l~~-i~-------------------~~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~ 243 (420)
T TIGR01578 184 ITSQDTGAYGRDIGSRLPELLRLITE-IP-------------------GEFRLRVGMMNPKNVLEILDELANVYQHEKVY 243 (420)
T ss_pred EEeeccccccCCCCcCHHHHHHHHHh-CC-------------------CCcEEEEcCCCCCcccccCHHHHHHHhccccc
Confidence 55554443321 235566655543 11 11234555 3775 45788888888655 7
Q ss_pred CeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEe
Q 008466 258 TRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIY 335 (564)
Q Consensus 258 ~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy 335 (564)
..+++|+||+++++|+.|||+++.+++.++++.++++ |+.+..|+|+|+||||.+++.++++++. +++++.+.++
T Consensus 244 ~~l~iglQSgsd~iL~~m~R~~~~~~~~~~i~~i~~~~~~i~i~~~~IvG~PgET~ed~~~t~~~~~---~~~~~~i~~~ 320 (420)
T TIGR01578 244 KFLHLPVQSGSDSVLKEMKREYTVSDFEDIVDKFRERFPDLTLSTDIIVGFPTETDDDFEETMELLR---KYRPEKINIT 320 (420)
T ss_pred CceEeCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEeeEEEeCCCCCHHHHHHHHHHHH---HhCCCEEEEE
Confidence 9999999999999999999999999999999999998 8889999999999999999999999987 5789999999
Q ss_pred eeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 008466 336 PTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILA 371 (564)
Q Consensus 336 ~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~ 371 (564)
++.|.|||+++++ +..+.+...+....+.+
T Consensus 321 ~~~p~pGT~~~~~------~~v~~~~~~~R~~~l~~ 350 (420)
T TIGR01578 321 KFSPRPGTPAAKM------KRIPTNIVKKRSKRLTK 350 (420)
T ss_pred EeeCCCCCcccCC------CCCCHHHHHHHHHHHHH
Confidence 9999999999864 12455555555544443
No 52
>PRK06256 biotin synthase; Validated
Probab=99.83 E-value=2.9e-19 Score=187.84 Aligned_cols=180 Identities=13% Similarity=0.079 Sum_probs=142.2
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe
Q 008466 160 NPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET 239 (564)
Q Consensus 160 ~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt 239 (564)
.+..+++.....+.+.|. ..+-.+.+|+.|...+.+++.++++.+++.. .+.+.+
T Consensus 91 ~s~eeI~~~~~~~~~~g~--~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~-----------------------~i~~~~ 145 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGA--GTFCIVASGRGPSGKEVDQVVEAVKAIKEET-----------------------DLEICA 145 (336)
T ss_pred CCHHHHHHHHHHHHHCCC--CEEEEEecCCCCCchHHHHHHHHHHHHHhcC-----------------------CCcEEe
Confidence 345666666666776663 1122222355554433346666666665432 133344
Q ss_pred eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHH
Q 008466 240 RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFR 319 (564)
Q Consensus 240 rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~ 319 (564)
+...++++.++.|+++|++++.+|+|| ++++++.++++|+.++.+++++.++++|+++++++|+|+ |||.+++.+++.
T Consensus 146 ~~g~l~~e~l~~LkeaG~~~v~~~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~~ 223 (336)
T PRK06256 146 CLGLLTEEQAERLKEAGVDRYNHNLET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHAF 223 (336)
T ss_pred cCCcCCHHHHHHHHHhCCCEEecCCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHHH
Confidence 566699999999999999999999999 999999999999999999999999999999999999999 999999999998
Q ss_pred HHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 320 EFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 320 ~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
.+. +++++.+.++++.|.|||||+. ..+++.++.+.+++.+.-.+|.
T Consensus 224 ~l~---~l~~~~v~i~~l~P~pGT~l~~------~~~~~~~e~l~~ia~~Rl~~p~ 270 (336)
T PRK06256 224 FLK---ELDADSIPINFLNPIPGTPLEN------HPELTPLECLKTIAIFRLINPD 270 (336)
T ss_pred HHH---hCCCCEEeecccccCCCCCCCC------CCCCCHHHHHHHHHHHHHHCCC
Confidence 886 6889999999999999999864 2568999999999988777764
No 53
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.82 E-value=2.5e-18 Score=177.40 Aligned_cols=130 Identities=16% Similarity=0.144 Sum_probs=119.7
Q ss_pred EEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHH
Q 008466 236 TIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDL 315 (564)
Q Consensus 236 tiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~ 315 (564)
.+..++..+++|.++.|+++|+++|.+|+| .++++++.++++|+.+++.++++.++++|++++.++|+|+ ++|.+++.
T Consensus 113 ~~~~~~g~~~~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl-~et~~d~~ 190 (296)
T TIGR00433 113 KTCATLGLLDPEQAKRLKDAGLDYYNHNLD-TSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGL-GETVEDRI 190 (296)
T ss_pred eEEecCCCCCHHHHHHHHHcCCCEEEEccc-CCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeC-CCCHHHHH
Confidence 334566778999999999999999999999 8999999999999999999999999999999999999998 99999999
Q ss_pred HHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCc
Q 008466 316 ESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPW 376 (564)
Q Consensus 316 ~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~ 376 (564)
++++.+. .++++.+.++++.|.|||+|+. +.+++.+++++.++.+...+|+.
T Consensus 191 ~~~~~l~---~l~~~~i~l~~l~p~~gT~l~~------~~~~s~~~~~~~ia~~r~~lp~~ 242 (296)
T TIGR00433 191 GLALALA---NLPPESVPINFLVKIKGTPLAD------NKELSADDALKTIALARIIMPKA 242 (296)
T ss_pred HHHHHHH---hCCCCEEEeeeeEEcCCCccCC------CCCCCHHHHHHHHHHHHHHCCcc
Confidence 9998886 5789999999999999999875 67889999999999999999864
No 54
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=2.3e-18 Score=184.00 Aligned_cols=198 Identities=17% Similarity=0.228 Sum_probs=151.6
Q ss_pred CCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCCC------HH
Q 008466 124 NICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLP------AD 197 (564)
Q Consensus 124 ~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l~------~~ 197 (564)
+.|+|| ..| ...|. .+-.+..+++.+..+|.+.|.. |.++.|=+-+++- ..
T Consensus 156 ~~CtfC---------iiP-~~RG~---------~rSr~~e~Il~ev~~Lv~~G~k----EI~L~gqdv~aYG~D~~~~~~ 212 (437)
T COG0621 156 KFCTFC---------IIP-YARGK---------ERSRPPEDILKEVKRLVAQGVK----EIVLTGQDVNAYGKDLGGGKP 212 (437)
T ss_pred CCCCee---------eee-ccCCC---------ccCCCHHHHHHHHHHHHHCCCe----EEEEEEEehhhccccCCCCcc
Confidence 599999 333 33454 3557788889999999998852 2223232222211 24
Q ss_pred HHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe-eCCCCCHHHHHHHHHcC--CCeEEEccCCCCHHHHHh
Q 008466 198 YRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET-RPDYCLGPHLRQMLSYG--CTRLEIGVQSTYEDVARD 274 (564)
Q Consensus 198 ~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt-rPd~i~~e~L~~L~~~G--~~rvsiGvQS~~d~vL~~ 274 (564)
.+..||+.|.+ .+ ....+.+.+ +|..++++.++++++.. +..+.|-|||++|++|+.
T Consensus 213 ~l~~Ll~~l~~-I~-------------------G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~ 272 (437)
T COG0621 213 NLADLLRELSK-IP-------------------GIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKR 272 (437)
T ss_pred CHHHHHHHHhc-CC-------------------CceEEEEecCCchhcCHHHHHHHhcCCcccccccCccccCCHHHHHH
Confidence 46667776655 32 345788886 99999999999999964 799999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcC
Q 008466 275 TNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTG 352 (564)
Q Consensus 275 i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G 352 (564)
|+|+||.+++.+.++.+|++ ++.+.+|+|+|+||||.++|.+|++.+- +.++|++.++++.+.||||-+.+.
T Consensus 273 M~R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGFPgETeedFe~tl~lv~---e~~fd~~~~F~YSpRpGTpAa~~~--- 346 (437)
T COG0621 273 MKRGYTVEEYLEIIEKLRAARPDIAISTDIIVGFPGETEEDFEETLDLVE---EVRFDRLHVFKYSPRPGTPAALMP--- 346 (437)
T ss_pred hCCCcCHHHHHHHHHHHHHhCCCceEeccEEEECCCCCHHHHHHHHHHHH---HhCCCEEeeeecCCCCCCccccCC---
Confidence 99999999999999999986 3446789999999999999999998886 688999999999999999987432
Q ss_pred CCCCCCHHHHHHHHHHHHHh
Q 008466 353 RYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 353 ~~~~~~~ee~~~~~~~~~~~ 372 (564)
...+.+..-+.+..+.++
T Consensus 347 --~qvp~~vkkeR~~~L~~l 364 (437)
T COG0621 347 --DQVPEEVKKERLRRLQEL 364 (437)
T ss_pred --CCCCHHHHHHHHHHHHHH
Confidence 245666666666555544
No 55
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=99.79 E-value=6.3e-18 Score=183.76 Aligned_cols=206 Identities=14% Similarity=0.175 Sum_probs=151.7
Q ss_pred EEeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEE
Q 008466 107 VAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFIL 186 (564)
Q Consensus 107 vavmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~ 186 (564)
.|.+....+||| +|+|| ..+.. .|+ .+..+..+++.++..+.+.|.. +.++
T Consensus 140 ~a~v~isrGCp~------~CsFC---------~ip~~-~G~---------~rsr~~e~Vv~Ei~~l~~~g~k----ei~l 190 (440)
T PRK14862 140 YAYLKISEGCNH------RCTFC---------IIPSM-RGD---------LVSRPIGDVLREAERLVKAGVK----ELLV 190 (440)
T ss_pred EEEEEeccCCCC------CCccC---------Ccccc-cCC---------ccccCHHHHHHHHHHHHHCCCc----eEEE
Confidence 355566778996 99999 23322 232 2456777888877778776631 2334
Q ss_pred EcCCCCCC------------C---HHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-eeCCCCCHHHHH
Q 008466 187 MGGTFMSL------------P---ADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE-TRPDYCLGPHLR 250 (564)
Q Consensus 187 ~GGTpt~l------------~---~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE-trPd~i~~e~L~ 250 (564)
.|.+.+.. . ..++..|++.|.+. . ..+.+. +.|..++++.++
T Consensus 191 ~~~d~~~yg~d~~~~~~~~~~~~~~~~~~~Ll~~l~~~-~---------------------~~~r~~~~~p~~~~dell~ 248 (440)
T PRK14862 191 ISQDTSAYGVDVKYRTGFWNGRPVKTRMTDLCEALGEL-G---------------------AWVRLHYVYPYPHVDEVIP 248 (440)
T ss_pred EecChhhhccccccccccccccchhhHHHHHHHHHHhc-C---------------------CEEEEecCCCCcCCHHHHH
Confidence 43332111 0 34566666666542 1 134444 467778899999
Q ss_pred HHHHcCCC--eEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCC
Q 008466 251 QMLSYGCT--RLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPL 326 (564)
Q Consensus 251 ~L~~~G~~--rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~ 326 (564)
.|++ |+. .+.||+||+++++|+.|||+++.+++.++++.+++. |+.+..++|+|+||||.+++.++++++. +
T Consensus 249 ~m~~-g~~~~~l~IglESgs~~vLk~m~r~~~~~~~~~~i~~lr~~~~~i~i~t~~IvGfPgET~edf~~tl~fi~---e 324 (440)
T PRK14862 249 LMAE-GKILPYLDIPFQHASPRVLKRMKRPASVEKTLERIKKWREICPDLTIRSTFIVGFPGETEEDFQMLLDFLK---E 324 (440)
T ss_pred HHhc-CCCccccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHCCCceecccEEEECCCCCHHHHHHHHHHHH---H
Confidence 9999 764 899999999999999999999999999999999996 6778889999999999999999999987 5
Q ss_pred CCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 327 FRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 327 l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
++++.+.+++++|.|||+.+++ . ...++++..+.+..+.+.
T Consensus 325 ~~~d~~~~f~ysP~pGT~a~~~--~---~~v~~~~~~~r~~~l~~~ 365 (440)
T PRK14862 325 AQLDRVGCFKYSPVEGATANDL--P---DQVPEEVKEERWARFMEV 365 (440)
T ss_pred cCCCeeeeEeecCCCCCchhhC--C---CCCCHHHHHHHHHHHHHH
Confidence 7899999999999999997543 1 236777777777665553
No 56
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.76 E-value=1.9e-16 Score=159.60 Aligned_cols=174 Identities=21% Similarity=0.376 Sum_probs=150.5
Q ss_pred EEEEEEcCCCC---CCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHc--C
Q 008466 182 VEFILMGGTFM---SLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSY--G 256 (564)
Q Consensus 182 ve~I~~GGTpt---~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~--G 256 (564)
+--||..|.|. -.|++....+++.|.+. +.+.++.+|+||+++++|.|+.+.+. |
T Consensus 103 ~vkIFTSGSFLD~~EVP~e~R~~Il~~is~~--------------------~~v~~vvvESRpE~I~eE~l~e~~~il~g 162 (358)
T COG1244 103 VVKIFTSGSFLDPEEVPREARRYILERISEN--------------------DNVKEVVVESRPEFIREERLEEITEILEG 162 (358)
T ss_pred eEEEEcccccCChhhCCHHHHHHHHHHHhhc--------------------cceeEEEeecCchhcCHHHHHHHHHhhCC
Confidence 33467777664 46777777777777642 24578999999999999999999998 7
Q ss_pred C-CeEEEccCCCCHHHH-HhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEE
Q 008466 257 C-TRLEIGVQSTYEDVA-RDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKI 334 (564)
Q Consensus 257 ~-~rvsiGvQS~~d~vL-~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~i 334 (564)
. ..|.||+||.||++. ..||||.|.+++.+|++.++.+|+++-+++++-+|.-+..+..+++...+.......|.|++
T Consensus 163 k~~EvaIGLETanD~ire~sINKGftF~df~~A~~~ir~~g~~vktYlllKP~FlSE~eAI~D~i~Si~~~~~~~d~iSi 242 (358)
T COG1244 163 KIVEVAIGLETANDKIREDSINKGFTFEDFVRAAEIIRNYGAKVKTYLLLKPPFLSEKEAIEDVISSIVAAKPGTDTISI 242 (358)
T ss_pred ceEEEEEecccCcHHHHHHhhhcCCcHHHHHHHHHHHHHcCCceeEEEEecccccChHHHHHHHHHHHHHhccCCCeEEe
Confidence 5 899999999999999 59999999999999999999999999999999999998877666655555444567899999
Q ss_pred eeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 335 YPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 335 y~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
.|+.|.+||-+..+|++|.|+||-....++.+..++...|.
T Consensus 243 nptnVqKgTlvE~lw~~g~YRPPwLWSivEVL~~~~~~~~~ 283 (358)
T COG1244 243 NPTNVQKGTLVEKLWRRGLYRPPWLWSIVEVLREAKKTGPM 283 (358)
T ss_pred cccccchhhHHHHHHHcCCCCCchHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999998864
No 57
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.75 E-value=3.2e-17 Score=174.44 Aligned_cols=218 Identities=16% Similarity=0.178 Sum_probs=160.0
Q ss_pred cCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE--EEcCCCCCCCHH
Q 008466 120 ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI--LMGGTFMSLPAD 197 (564)
Q Consensus 120 PfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I--~~GGTpt~l~~~ 197 (564)
.+|+.+|.|| .|.. .+. .+ ...-...+++.....+.+.| ++.| ++|++|...+.+
T Consensus 82 n~C~~~C~YC------~f~~---~~~-~~--------~~~ls~eEI~~~a~~~~~~G-----v~~i~lvgGe~p~~~~~e 138 (371)
T PRK09240 82 NYCANDCTYC------GFSM---SNK-IK--------RKTLDEEEIEREMAAIKKLG-----FEHILLLTGEHEAKVGVD 138 (371)
T ss_pred ccccCcCCcC------CCCC---CCC-Cc--------cccCCHHHHHHHHHHHHhCC-----CCEEEEeeCCCCCCCCHH
Confidence 5667899999 5531 111 10 12334455555555566666 4444 356678778999
Q ss_pred HHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcC-
Q 008466 198 YRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTN- 276 (564)
Q Consensus 198 ~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~- 276 (564)
++.++++.|++.++ ++++++.| ++.+.++.|+++|++++++++||.+++.++.+.
T Consensus 139 ~l~~~i~~Ik~~~p----------------------~i~i~~g~--lt~e~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~ 194 (371)
T PRK09240 139 YIRRALPIAREYFS----------------------SVSIEVQP--LSEEEYAELVELGLDGVTVYQETYNPATYAKHHL 194 (371)
T ss_pred HHHHHHHHHHHhCC----------------------CceeccCC--CCHHHHHHHHHcCCCEEEEEEecCCHHHHHHhCc
Confidence 99999999887653 35666665 799999999999999999999999999999985
Q ss_pred --CCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCC-CC--CCCeEEEeeeeecCCChhHHHHH
Q 008466 277 --RGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESP-LF--RADGLKIYPTLVIRGTGLYELWK 350 (564)
Q Consensus 277 --Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~-~l--~pd~i~iy~l~v~~GT~L~~~~~ 350 (564)
+.|+.++.+++++.++++||+ +++++|+|+ |++.++..+++..+.++. .+ .+..|.+..+.|.+| ++..
T Consensus 195 ~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Gl-ge~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~--- 269 (371)
T PRK09240 195 RGPKRDFEYRLETPERAGRAGIRKIGLGALLGL-SDWRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTG-GIEP--- 269 (371)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCeeceEEEecC-CccHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCC-CCCC---
Confidence 689999999999999999996 999999999 568887777776554321 11 124678888999999 8632
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHHhCCCcchHHHHH
Q 008466 351 TGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELA 404 (564)
Q Consensus 351 ~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~~G~~~~~~~~~a 404 (564)
..+++++++++.++.+.-.+|. +.| ..+|-+..++|+..
T Consensus 270 ---~~~~~~~e~l~~ia~~Rl~lP~-~~i-----------~~s~g~~~~lrd~~ 308 (371)
T PRK09240 270 ---ASIVSDKQLVQLICAFRLFLPD-VEI-----------SLSTRESPEFRDNL 308 (371)
T ss_pred ---CCCCCHHHHHHHHHHHHHHCcc-ccc-----------EEecCCCHHHHHHH
Confidence 3568999999999998888863 222 23455556666543
No 58
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.75 E-value=5.3e-17 Score=171.22 Aligned_cols=185 Identities=11% Similarity=0.092 Sum_probs=148.4
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-
Q 008466 161 PYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE- 238 (564)
Q Consensus 161 ~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE- 238 (564)
+..+++....++...| +..| +.||+.+.++.+++.++++.|++.++. +.|.+.
T Consensus 71 s~eeI~e~~~~~~~~G-----~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~--------------------i~~~~~t 125 (343)
T TIGR03551 71 SLEEIAERAAEAWKAG-----ATEVCIQGGIHPDLDGDFYLDILRAVKEEVPG--------------------MHIHAFS 125 (343)
T ss_pred CHHHHHHHHHHHHHCC-----CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCC--------------------ceEEecC
Confidence 5566666666666666 4445 567877778899999999999886541 234432
Q ss_pred --------eeCCCCCHHHHHHHHHcCCCeEE-EccCCCCHHHHHhcCCCC-CHHHHHHHHHHHHHcCCcEEEEEecCCCC
Q 008466 239 --------TRPDYCLGPHLRQMLSYGCTRLE-IGVQSTYEDVARDTNRGH-TVAAVADCFCLAKDAGFKVVAHMMPDLPN 308 (564)
Q Consensus 239 --------trPd~i~~e~L~~L~~~G~~rvs-iGvQS~~d~vL~~i~Rgh-t~~~~~~ai~~lr~~G~~v~~~lI~GLPg 308 (564)
++.+.++++.++.|+++|++++. .|.+++++++++.+.+++ +.++.+++++.++++|+++++.+|+|+|
T Consensus 126 ~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~- 204 (343)
T TIGR03551 126 PMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHV- 204 (343)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecC-
Confidence 25667789999999999999997 578999999999999975 9999999999999999999999999986
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecC----CChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCc
Q 008466 309 VGVERDLESFREFFESPLFRADGLKIYPTLVIR----GTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPW 376 (564)
Q Consensus 309 et~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~----GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~ 376 (564)
||.++..+++..+. +++++...+.++.|.+ ||||++.. ....+++.++.+.+++-+.-.+|..
T Consensus 205 Et~ed~~~~l~~lr---~l~~~~~~~~~~iP~~f~~~gT~l~~~~--~~~~~~~~~~~lr~iAv~Rl~lp~~ 271 (343)
T TIGR03551 205 ETPEHWVDHLLILR---EIQEETGGFTEFVPLPFVHYNAPLYLKG--MARPGPTGREDLKVHAIARILLHGL 271 (343)
T ss_pred CCHHHHHHHHHHHH---HhhHHhCCeeEEEeccccCCCCcccccc--CCCCCCCHHHHHHHHHHHHHhCCCc
Confidence 99999999999887 5777777777777766 99998631 1224579999999999999899874
No 59
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=99.74 E-value=9.1e-17 Score=170.78 Aligned_cols=195 Identities=13% Similarity=0.101 Sum_probs=146.1
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEE--EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE
Q 008466 161 PYVQARSRIDQLKRLGHSVDKVEFI--LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE 238 (564)
Q Consensus 161 ~y~~~l~r~~~l~~~g~~~~kve~I--~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE 238 (564)
+..++......+...| ++.| ++|++|...+.+++.++++.+++.++ +++++
T Consensus 104 s~eEI~~~a~~~~~~G-----v~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p----------------------~i~Ie 156 (366)
T TIGR02351 104 NEEEIEREIEAIKKSG-----FKEILLVTGESEKAAGVEYIAEAIKLAREYFS----------------------SLAIE 156 (366)
T ss_pred CHHHHHHHHHHHHhCC-----CCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCC----------------------ccccc
Confidence 3445555455566666 3333 36778888999999999999987664 24455
Q ss_pred eeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcC---CCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHH
Q 008466 239 TRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTN---RGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERD 314 (564)
Q Consensus 239 trPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~---Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~ 314 (564)
..| ++.+.++.|+++|++|+++|+||.++++++.++ +.|+.++.+++++.++++||. +++++|+|+|+ +.++.
T Consensus 157 i~~--lt~e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Gl~e-~~~d~ 233 (366)
T TIGR02351 157 VQP--LNEEEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALLGLDD-WRTDA 233 (366)
T ss_pred ccc--CCHHHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEEeCch-hHHHH
Confidence 555 899999999999999999999999999999986 789999999999999999998 88999999975 66666
Q ss_pred HHHHHHHhcCCCC---CCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHH
Q 008466 315 LESFREFFESPLF---RADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLV 391 (564)
Q Consensus 315 ~~t~~~~~~~~~l---~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~ 391 (564)
.+++..+..+... .+..|++--+.|.+| ++.. ..++++.+.++.++.+.-.+|.. .+.
T Consensus 234 ~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~------~~~l~~~~~~~~i~~~R~~~P~~------------~i~ 294 (366)
T TIGR02351 234 FFTAYHLRYLQKKYWKTEISISVPRLRPCTN-GLKP------KVIVTDRELVQIICAYRLFDPFV------------EIS 294 (366)
T ss_pred HHHHHHHHHHHHHcCCCCccccccccccCCC-CCCC------CCcCCHHHHHHHHHHHHHhCccc------------ccE
Confidence 6655554432111 126788888899998 7632 25789999999999988888741 123
Q ss_pred HhCCCcchHHHHH
Q 008466 392 TSGVEKGNLRELA 404 (564)
Q Consensus 392 ~~G~~~~~~~~~a 404 (564)
.+|-+..++|+..
T Consensus 295 ~s~g~~~~lrd~~ 307 (366)
T TIGR02351 295 LSTRESKKFRDNV 307 (366)
T ss_pred EecCCCHHHHHHH
Confidence 4455666666443
No 60
>PRK08508 biotin synthase; Provisional
Probab=99.71 E-value=9.8e-16 Score=157.12 Aligned_cols=177 Identities=13% Similarity=0.118 Sum_probs=139.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEEE--EcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE
Q 008466 161 PYVQARSRIDQLKRLGHSVDKVEFIL--MGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE 238 (564)
Q Consensus 161 ~y~~~l~r~~~l~~~g~~~~kve~I~--~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE 238 (564)
+-.+++....+..+.|. .+..+ .|-++.....+++.++++.|++.+. .+.+.
T Consensus 41 s~eeI~~~a~~a~~~g~----~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p----------------------~l~i~ 94 (279)
T PRK08508 41 DIEQIVQEAKMAKANGA----LGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVP----------------------GLHLI 94 (279)
T ss_pred CHHHHHHHHHHHHHCCC----CEEEEEeccCCCCcccHHHHHHHHHHHHhhCC----------------------CcEEE
Confidence 44566655555555552 12323 2333444455677777777765442 23344
Q ss_pred eeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHH
Q 008466 239 TRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESF 318 (564)
Q Consensus 239 trPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~ 318 (564)
+....+++|.++.|+++|++++.++++|. ++.+..+..+|+.++++++++.++++|+++...+|+|+ |||+++..+.+
T Consensus 95 ~s~G~~~~e~l~~Lk~aGld~~~~~lEt~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~Gl-GEt~ed~~~~l 172 (279)
T PRK08508 95 ACNGTASVEQLKELKKAGIFSYNHNLETS-KEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGL-GESWEDRISFL 172 (279)
T ss_pred ecCCCCCHHHHHHHHHcCCCEEcccccch-HHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEec-CCCHHHHHHHH
Confidence 44566789999999999999999999995 78899999999999999999999999999999999998 99999999999
Q ss_pred HHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 319 REFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 319 ~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
..+. +++++.+.++.+.+.+|||+.. .+.+.++.+.+++-+.-.+|.
T Consensus 173 ~~lr---~L~~~svpl~~~~p~~~t~~~~-------~~~~~~~~lr~iAv~Rl~lp~ 219 (279)
T PRK08508 173 KSLA---SLSPHSTPINFFIPNPALPLKA-------PTLSADEALEIVRLAKEALPN 219 (279)
T ss_pred HHHH---cCCCCEEeeCCcCCCCCCCCCC-------CCCCHHHHHHHHHHHHHHCCC
Confidence 8886 6889999999999999999841 357999999999988888874
No 61
>PLN02389 biotin synthase
Probab=99.70 E-value=1.6e-15 Score=161.30 Aligned_cols=130 Identities=12% Similarity=0.103 Sum_probs=116.6
Q ss_pred EeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHH
Q 008466 238 ETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLES 317 (564)
Q Consensus 238 EtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t 317 (564)
-+....++++.++.|+++|++++.++++| +++..+.+..+|+.++.+++++.++++|+++++++|+|+ |||.++..++
T Consensus 170 ~~s~G~l~~E~l~~LkeAGld~~~~~LeT-s~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGl-gEt~edrv~~ 247 (379)
T PLN02389 170 CCTLGMLEKEQAAQLKEAGLTAYNHNLDT-SREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGL-GEAEEDRVGL 247 (379)
T ss_pred EECCCCCCHHHHHHHHHcCCCEEEeeecC-ChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECC-CCCHHHHHHH
Confidence 35667789999999999999999999999 588999998899999999999999999999999999999 9999999999
Q ss_pred HHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCc
Q 008466 318 FREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPW 376 (564)
Q Consensus 318 ~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~ 376 (564)
+..+.++ ...|+.+.+.++.|.|||||++ .++++.++.+.+++.+.-++|..
T Consensus 248 l~~Lr~L-~~~~~~v~l~~l~P~~GTpL~~------~~~~s~~e~lr~iAi~Rl~lP~~ 299 (379)
T PLN02389 248 LHTLATL-PEHPESVPINALVAVKGTPLED------QKPVEIWEMVRMIATARIVMPKA 299 (379)
T ss_pred HHHHHhc-ccCCcEEecccceecCCCcCCC------CCCCCHHHHHHHHHHHHHHCCCc
Confidence 9877643 2379999999999999999965 25689999999999998889864
No 62
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.70 E-value=5.2e-16 Score=147.43 Aligned_cols=140 Identities=24% Similarity=0.367 Sum_probs=122.9
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeE
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rv 260 (564)
+..+ ++||+|+..+ .+..+++.+++... ...+++.|++..++++.++.|+++|+.+|
T Consensus 45 ~~~i~~~ggep~~~~--~~~~~i~~~~~~~~--------------------~~~~~i~T~~~~~~~~~~~~l~~~g~~~i 102 (204)
T cd01335 45 VEVVILTGGEPLLYP--ELAELLRRLKKELP--------------------GFEISIETNGTLLTEELLKELKELGLDGV 102 (204)
T ss_pred ceEEEEeCCcCCccH--hHHHHHHHHHhhCC--------------------CceEEEEcCcccCCHHHHHHHHhCCCceE
Confidence 4555 6899998776 56666776665432 35799999999889999999999999999
Q ss_pred EEccCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCC-CCeEEEeeee
Q 008466 261 EIGVQSTYEDVARDTN-RGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFR-ADGLKIYPTL 338 (564)
Q Consensus 261 siGvQS~~d~vL~~i~-Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~-pd~i~iy~l~ 338 (564)
.+|++|.++++++.++ ++.+.++++++++.+++.|+.+.+.+|+|+|+++.+++.++++.+.+ +. ++.+.++++.
T Consensus 103 ~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~ 179 (204)
T cd01335 103 GVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDEEDDLEELELLAE---FRSPDRVSLFRLL 179 (204)
T ss_pred EEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEEecCCChhHHHHHHHHHHHh---hcCcchhhhhhhc
Confidence 9999999999999998 88999999999999999999999999999999998888999988873 44 8999999999
Q ss_pred ecCCChhH
Q 008466 339 VIRGTGLY 346 (564)
Q Consensus 339 v~~GT~L~ 346 (564)
+.+||+|+
T Consensus 180 p~~~t~~~ 187 (204)
T cd01335 180 PEEGTPLE 187 (204)
T ss_pred ccCCCeee
Confidence 99999998
No 63
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=99.70 E-value=9.7e-16 Score=158.12 Aligned_cols=202 Identities=15% Similarity=0.182 Sum_probs=156.1
Q ss_pred CCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEE-EcCCCCCCCHHHHH
Q 008466 122 TGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFIL-MGGTFMSLPADYRD 200 (564)
Q Consensus 122 C~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~-~GGTpt~l~~~~l~ 200 (564)
|+..|.||++. .+.-++.. ........+++......++.|- .+..+ .+|--.-...+++.
T Consensus 61 c~edC~yC~qS--------~~~~~~~~-------~~~l~~~eeIle~Ak~ak~~Ga----~r~c~~aagr~~~~~~~~i~ 121 (335)
T COG0502 61 CPEDCAYCSQS--------ARYKTGVK-------ARKLMEVEEILEAAKKAKAAGA----TRFCMGAAGRGPGRDMEEVV 121 (335)
T ss_pred CCCCCCCcccc--------ccCcCCCc-------hhhcCCHHHHHHHHHHHHHcCC----ceEEEEEeccCCCccHHHHH
Confidence 45899999532 22112221 2334566777777777888773 23332 22211335556666
Q ss_pred HHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCC
Q 008466 201 YFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHT 280 (564)
Q Consensus 201 ~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght 280 (564)
+.++.+++.++ +-+-+....++++.++.|+++|++++..+++| +++..+.+--+||
T Consensus 122 ~~v~~Vk~~~~-----------------------le~c~slG~l~~eq~~~L~~aGvd~ynhNLeT-s~~~y~~I~tt~t 177 (335)
T COG0502 122 EAIKAVKEELG-----------------------LEVCASLGMLTEEQAEKLADAGVDRYNHNLET-SPEFYENIITTRT 177 (335)
T ss_pred HHHHHHHHhcC-----------------------cHHhhccCCCCHHHHHHHHHcChhheeccccc-CHHHHcccCCCCC
Confidence 66666665443 33334556789999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCC-CCeEEEeeeeecCCChhHHHHHcCCCCCCCH
Q 008466 281 VAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFR-ADGLKIYPTLVIRGTGLYELWKTGRYRNYPP 359 (564)
Q Consensus 281 ~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~-pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ 359 (564)
.+|.+++++.+|++|+++++..|+|| |||.++..+.+..+.+ +. ||.|.|+.|.|.|||||++ .++.+.
T Consensus 178 ~edR~~tl~~vk~~Gi~vcsGgI~Gl-GEs~eDri~~l~~L~~---l~~pdsVPIn~l~P~~GTPle~------~~~~~~ 247 (335)
T COG0502 178 YEDRLNTLENVREAGIEVCSGGIVGL-GETVEDRAELLLELAN---LPTPDSVPINFLNPIPGTPLEN------AKPLDP 247 (335)
T ss_pred HHHHHHHHHHHHHcCCccccceEecC-CCCHHHHHHHHHHHHh---CCCCCeeeeeeecCCCCCcccc------CCCCCH
Confidence 99999999999999999999999999 8999998888888874 55 9999999999999999976 467899
Q ss_pred HHHHHHHHHHHHhCCCc
Q 008466 360 EQLVDIVARILAMVPPW 376 (564)
Q Consensus 360 ee~~~~~~~~~~~lp~~ 376 (564)
.+.+..++.+.-.+|..
T Consensus 248 ~e~lk~IA~~Ri~~P~~ 264 (335)
T COG0502 248 FEFLKTIAVARIIMPKS 264 (335)
T ss_pred HHHHHHHHHHHHHCCcc
Confidence 99999999999999853
No 64
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.69 E-value=9e-16 Score=159.65 Aligned_cols=182 Identities=11% Similarity=0.111 Sum_probs=138.3
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE
Q 008466 160 NPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE 238 (564)
Q Consensus 160 ~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE 238 (564)
.+..+++.........| ++.| +.||+...++.+++.++++.|++.... +.+..-
T Consensus 36 ls~eeI~~~~~~~~~~G-----~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~--------------------i~~~~~ 90 (309)
T TIGR00423 36 LSLEEILEKVKEAVAKG-----ATEVCIQGGLNPQLDIEYYEELFRAIKQEFPD--------------------VHIHAF 90 (309)
T ss_pred CCHHHHHHHHHHHHHCC-----CCEEEEecCCCCCCCHHHHHHHHHHHHHHCCC--------------------ceEEec
Confidence 44556666555566666 3444 557766668889999999999886531 223322
Q ss_pred ee---------CCCCCHHHHHHHHHcCCCeEE-EccCCCCHHHHHhc-CCCCCHHHHHHHHHHHHHcCCcEEEEEecCCC
Q 008466 239 TR---------PDYCLGPHLRQMLSYGCTRLE-IGVQSTYEDVARDT-NRGHTVAAVADCFCLAKDAGFKVVAHMMPDLP 307 (564)
Q Consensus 239 tr---------Pd~i~~e~L~~L~~~G~~rvs-iGvQS~~d~vL~~i-~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLP 307 (564)
++ ....+++.++.|+++|++++. .|+|++++++++.+ +++.+.++..++++.++++|+++++.+|+|+|
T Consensus 91 s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~iiG~~ 170 (309)
T TIGR00423 91 SPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATMMFGHV 170 (309)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEecCC
Confidence 22 222358999999999999995 79999999999988 56779999999999999999999999999997
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeec----CCCh-hHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 308 NVGVERDLESFREFFESPLFRADGLKIYPTLVI----RGTG-LYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 308 get~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~----~GT~-L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
||.++..+++..+. +++++...+.++.|. +||| |... ..++++.++...+++.+.-++|
T Consensus 171 -Et~ed~~~~l~~lr---~l~~~~~~f~~fiP~~f~~~~t~~l~~~----~~~~~~~~e~lr~iA~~Rl~lp 234 (309)
T TIGR00423 171 -ENPEHRVEHLLRIR---KIQEKTGGFTEFIPLPFQPENNPYLEGE----VRKGASGIDDLKVIAISRILLN 234 (309)
T ss_pred -CCHHHHHHHHHHHH---hhchhhCCeeeEEeeeecCCCChhhccC----CCCCCCHHHHHHHHHHHHHhcC
Confidence 89999999998886 466666555555553 5888 5321 2467899999999999888887
No 65
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=99.69 E-value=5.3e-16 Score=163.42 Aligned_cols=187 Identities=14% Similarity=0.133 Sum_probs=138.3
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCC-CchhhHHHhhhcccCCcccEEEEEE
Q 008466 161 PYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGH-TSANVEEAVTYSEHGATKCIGMTIE 238 (564)
Q Consensus 161 ~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~-~~~~l~e~~~~~~~~~~~~~eitiE 238 (564)
+-.+++.....+.+.| +..| +.||.+..++.+++.++++.|++..... +.. . ...++...
T Consensus 73 s~eei~~~~~~~~~~G-----~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~------------~-s~~ei~~~ 134 (340)
T TIGR03699 73 SVEEILQKIEELVAYG-----GTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHS------------F-SPVEIVYI 134 (340)
T ss_pred CHHHHHHHHHHHHHcC-----CcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCC------------C-CHHHHHHH
Confidence 3355555555566655 4444 5677666789999999999998765311 100 0 00111111
Q ss_pred eeC-CCCCHHHHHHHHHcCCCeEE-EccCCCCHHHHHhcCC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHH
Q 008466 239 TRP-DYCLGPHLRQMLSYGCTRLE-IGVQSTYEDVARDTNR-GHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDL 315 (564)
Q Consensus 239 trP-d~i~~e~L~~L~~~G~~rvs-iGvQS~~d~vL~~i~R-ght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~ 315 (564)
.+. ...+++.++.|+++|++++. .|+||+++++++.+.+ ++|.++.+++++.++++|+++++++|+|+ |||+++..
T Consensus 135 ~~~~g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl-gEt~ed~~ 213 (340)
T TIGR03699 135 AKKEGLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGH-VETLEDRI 213 (340)
T ss_pred hccCCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeC-CCCHHHHH
Confidence 111 22348999999999999998 5899999999999865 57999999999999999999999999997 99999999
Q ss_pred HHHHHHhcCCCCCCCeEEEeeeeec----CCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 316 ESFREFFESPLFRADGLKIYPTLVI----RGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 316 ~t~~~~~~~~~l~pd~i~iy~l~v~----~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
+++..+. +++++.+.+.++.|. +||||++ .++++.++.+.+++.+.-.+|.
T Consensus 214 ~~l~~l~---~l~~~~~~~~~fIP~~f~p~~tpl~~------~~~~~~~e~l~~iA~~Rl~lp~ 268 (340)
T TIGR03699 214 EHLERIR---ELQDKTGGFTAFIPWTFQPGNTELGK------KRPATSTEYLKVLAISRIFLDN 268 (340)
T ss_pred HHHHHHH---HhchhhCCeeEEEeecccCCCCcccC------CCCCCHHHHHHHHHHHHHcCCC
Confidence 9988886 466766555555543 6999864 3468899999999999998875
No 66
>PRK15108 biotin synthase; Provisional
Probab=99.68 E-value=3.9e-15 Score=156.99 Aligned_cols=180 Identities=12% Similarity=0.099 Sum_probs=140.5
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEEEEcC-CCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE
Q 008466 160 NPYVQARSRIDQLKRLGHSVDKVEFILMGG-TFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE 238 (564)
Q Consensus 160 ~~y~~~l~r~~~l~~~g~~~~kve~I~~GG-Tpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE 238 (564)
-+..+++.......+.|. .++ ++.+|| .|+..+.+++..+++.+++. . +.+.
T Consensus 76 ls~eEI~~~a~~~~~~G~--~~i-~i~~~g~~p~~~~~e~i~~~i~~ik~~-~---------------------i~v~-- 128 (345)
T PRK15108 76 MEVEQVLESARKAKAAGS--TRF-CMGAAWKNPHERDMPYLEQMVQGVKAM-G---------------------LETC-- 128 (345)
T ss_pred CCHHHHHHHHHHHHHcCC--CEE-EEEecCCCCCcchHHHHHHHHHHHHhC-C---------------------CEEE--
Confidence 344566655555666663 223 222344 45556667777777777641 1 1232
Q ss_pred eeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHH
Q 008466 239 TRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESF 318 (564)
Q Consensus 239 trPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~ 318 (564)
+....++.+.++.|+++|++++.++++| +++....+..+|+.++.++.++.++++|+++++++|+|+ |||+++..+.+
T Consensus 129 ~s~G~ls~e~l~~LkeAGld~~n~~leT-~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Gl-gEt~ed~v~~~ 206 (345)
T PRK15108 129 MTLGTLSESQAQRLANAGLDYYNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGL-GETVKDRAGLL 206 (345)
T ss_pred EeCCcCCHHHHHHHHHcCCCEEeecccc-ChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeC-CCCHHHHHHHH
Confidence 2344689999999999999999999999 899999998899999999999999999999999999999 99999999999
Q ss_pred HHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 319 REFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 319 ~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
..+.++ .-.++.|.+..+.|.+||||+. .++.++.+.+..++.+.-.+|.
T Consensus 207 ~~l~~l-~~~~~~ip~~~~~P~~gTpl~~------~~~~~~~e~lr~iAi~Rl~lp~ 256 (345)
T PRK15108 207 LQLANL-PTPPESVPINMLVKVKGTPLAD------NDDVDAFDFIRTIAVARIMMPT 256 (345)
T ss_pred HHHHhc-cCCCCEEEeCCccCCCCCCCCC------CCCCCHHHHHHHHHHHHHHCCC
Confidence 888642 1157899999999999999864 2457999999999999888886
No 67
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=99.66 E-value=1.5e-15 Score=166.02 Aligned_cols=114 Identities=23% Similarity=0.305 Sum_probs=102.7
Q ss_pred cEEEEEE-eeCCCCC-HHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHH-HHHHHHHcCCcEEEEEecCCCC
Q 008466 232 CIGMTIE-TRPDYCL-GPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVAD-CFCLAKDAGFKVVAHMMPDLPN 308 (564)
Q Consensus 232 ~~eitiE-trPd~i~-~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~-ai~~lr~~G~~v~~~lI~GLPg 308 (564)
...+++. .|+|.++ ++.+..++.+|+.++.+|+||+++++|+.++|+++.+++.+ +++.++++|+++..++|+|+||
T Consensus 284 ~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a~~~~~~~~~~~~~~~i~G~pg 363 (490)
T COG1032 284 RVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKINKGITTEEVLEEAVKIAKEHGLRVKLYFIVGLPG 363 (490)
T ss_pred eeeeeccccCchhcCHHHHHHHHhhCCCcceEEeccCCCHHHHHHHhCCCChHHHHHHHHHHHHhCCceeeEEEEEcCCC
Confidence 3567777 8999998 99999999999999999999999999999999999999995 9999999999999999999999
Q ss_pred CCHHHHHHHH---HHHhcCCCCCCC-eEEEeeeeecCCChhHHH
Q 008466 309 VGVERDLESF---REFFESPLFRAD-GLKIYPTLVIRGTGLYEL 348 (564)
Q Consensus 309 et~e~~~~t~---~~~~~~~~l~pd-~i~iy~l~v~~GT~L~~~ 348 (564)
||.+++.+++ +.+. ..++. .+.++++.+.|||++++.
T Consensus 364 et~ed~~~t~~~~~~~~---~~~~~~~~~~~~~~p~p~t~~~~~ 404 (490)
T COG1032 364 ETEEDVKETIELAKFIK---KLGPKLYVSPSPFVPLPGTPLQEM 404 (490)
T ss_pred CCHHHHHHHHHHHHHHH---HhCccceEEEeeeeCCCCCchhhc
Confidence 9999999983 4443 45664 899999999999999875
No 68
>PRK08445 hypothetical protein; Provisional
Probab=99.66 E-value=3.7e-15 Score=157.24 Aligned_cols=185 Identities=12% Similarity=0.169 Sum_probs=140.8
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe-
Q 008466 161 PYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET- 239 (564)
Q Consensus 161 ~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt- 239 (564)
+..++.....+....|.. +.++.||.+..++.+++.++++.|++.++. +.+...+
T Consensus 74 ~~eeI~~~~~~a~~~g~~----~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~--------------------i~~~a~s~ 129 (348)
T PRK08445 74 SFEEIDKKIEELLAIGGT----QILFQGGVHPKLKIEWYENLVSHIAQKYPT--------------------ITIHGFSA 129 (348)
T ss_pred CHHHHHHHHHHHHHcCCC----EEEEecCCCCCCCHHHHHHHHHHHHHHCCC--------------------cEEEEccH
Confidence 445666666667777631 334678888889999999999999998762 1222111
Q ss_pred -------eCCCCC-HHHHHHHHHcCCCeEE-EccCCCCHHHHHhc-CCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCC
Q 008466 240 -------RPDYCL-GPHLRQMLSYGCTRLE-IGVQSTYEDVARDT-NRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNV 309 (564)
Q Consensus 240 -------rPd~i~-~e~L~~L~~~G~~rvs-iGvQS~~d~vL~~i-~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPge 309 (564)
+-..++ +|.|+.|+++|++++. +|+||+++++++.+ +++.|.++.+++++.++++|+++++.+|+|+ +|
T Consensus 130 ~ei~~~a~~~~~~~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~G~-~E 208 (348)
T PRK08445 130 VEIDYIAKISKISIKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMFGT-VE 208 (348)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEecC-CC
Confidence 111233 8999999999999995 89999999999999 7799999999999999999999999999997 59
Q ss_pred CHHHHHHHHHHHhcCCCCCCCeE--EEee--eeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 310 GVERDLESFREFFESPLFRADGL--KIYP--TLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 310 t~e~~~~t~~~~~~~~~l~pd~i--~iy~--l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
|+++..+.+..+.+ ++++.. ...+ +.+.+||||+.. ....++++.++.+..++.+.-.+|.
T Consensus 209 t~edr~~~l~~lre---Lq~~~~g~~~fi~~~~~p~~tpl~~~--~~~~~~~~~~e~Lr~iAv~Rl~l~~ 273 (348)
T PRK08445 209 NDEEIIEHWERIRD---LQDETGGFRAFILWSFQPDNTPLKEE--IPEIKKQSSNRYLRLLAVSRLFLDN 273 (348)
T ss_pred CHHHHHHHHHHHHH---HHHHhCCeeEEeccccCCCCCccccc--CCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 99999999888864 444432 2222 334589999752 1134568999999999988888875
No 69
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.65 E-value=6.6e-14 Score=152.17 Aligned_cols=217 Identities=14% Similarity=0.103 Sum_probs=159.8
Q ss_pred CCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCC
Q 008466 115 RCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSL 194 (564)
Q Consensus 115 ~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l 194 (564)
+|+- ++|+++|.|| .|....... ....-.-.+++.+...+.+.|+. --.+++|.+|...
T Consensus 88 LyiS-N~C~n~C~YC------gfs~~n~~i-----------~r~~Ls~EEI~~ea~~~~~~G~~---~i~LvsGe~p~~~ 146 (469)
T PRK09613 88 LYIS-NYCVNNCVYC------GFRRSNKEI-----------KRKKLTQEEIREEVKALEDMGHK---RLALVAGEDPPNC 146 (469)
T ss_pred cccc-CCCCCCCccC------CCccCCCCC-----------CceECCHHHHHHHHHHHHHCCCC---EEEEEeCCCCCCC
Confidence 4553 7888999999 664111100 01122445556666667777853 2233578888889
Q ss_pred CHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHh
Q 008466 195 PADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARD 274 (564)
Q Consensus 195 ~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~ 274 (564)
+.+|+.++++.|++..... .....++++.-| ++.+.++.|+++|++++.+..||.+.++++.
T Consensus 147 ~~eyi~e~i~~I~~~~~~~----------------g~i~~v~inig~--lt~eey~~LkeaGv~~~~l~qETY~~ety~~ 208 (469)
T PRK09613 147 DIEYILESIKTIYSTKHGN----------------GEIRRVNVNIAP--TTVENYKKLKEAGIGTYQLFQETYHKPTYEK 208 (469)
T ss_pred CHHHHHHHHHHHHHhcccc----------------CcceeeEEEeec--CCHHHHHHHHHcCCCEEEeccccCCHHHHHh
Confidence 9999999999998754210 112357777766 8999999999999999999999999999999
Q ss_pred cC---CCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcC---CCCCCCeEEEeeeeecCCChhHH
Q 008466 275 TN---RGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFES---PLFRADGLKIYPTLVIRGTGLYE 347 (564)
Q Consensus 275 i~---Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~---~~l~pd~i~iy~l~v~~GT~L~~ 347 (564)
++ ..|+.++-++++++++++||. |++..|+|||+... +.+.++..+..+ -..+|+.|++-.+.|.+||||.+
T Consensus 209 ~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L~GLge~~~-E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~~ 287 (469)
T PRK09613 209 MHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVLFGLYDYKF-EVLGLLMHAEHLEERFGVGPHTISVPRLRPADGSDLEN 287 (469)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEEEcCCCCHH-HHHHHHHHHHHHHHhhCCCCccccccceecCCCCCccc
Confidence 85 468999999999999999998 99999999976444 445544444321 12368889999999999999842
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHhCCCc
Q 008466 348 LWKTGRYRNYPPEQLVDIVARILAMVPPW 376 (564)
Q Consensus 348 ~~~~G~~~~~~~ee~~~~~~~~~~~lp~~ 376 (564)
.-.++++++.+.+++.+.-.+|..
T Consensus 288 -----~~~~vsd~e~lriiA~~RL~~P~~ 311 (469)
T PRK09613 288 -----FPYLVSDEDFKKIVAILRLAVPYT 311 (469)
T ss_pred -----CCCCCCHHHHHHHHHHHHHHCCCC
Confidence 113579999999999888888753
No 70
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=99.64 E-value=4.9e-15 Score=156.77 Aligned_cols=182 Identities=13% Similarity=0.108 Sum_probs=139.1
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-
Q 008466 161 PYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE- 238 (564)
Q Consensus 161 ~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE- 238 (564)
+..+++....+....| ++.+ +.||....++.+++.++++.|++.++. +.+..-
T Consensus 80 ~~eeI~~~a~~~~~~G-----~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~--------------------i~i~~~~ 134 (351)
T TIGR03700 80 SLEEIVARVKEAYAPG-----ATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPD--------------------LHVKAFT 134 (351)
T ss_pred CHHHHHHHHHHHHHCC-----CcEEEEecCCCCCCCHHHHHHHHHHHHHHCCC--------------------ceEEeCC
Confidence 3455555555556566 4444 456655568889999999999987652 111110
Q ss_pred --------eeCCCCCHHHHHHHHHcCCCeEE-EccCCCCHHHHHhcCCCC-CHHHHHHHHHHHHHcCCcEEEEEecCCCC
Q 008466 239 --------TRPDYCLGPHLRQMLSYGCTRLE-IGVQSTYEDVARDTNRGH-TVAAVADCFCLAKDAGFKVVAHMMPDLPN 308 (564)
Q Consensus 239 --------trPd~i~~e~L~~L~~~G~~rvs-iGvQS~~d~vL~~i~Rgh-t~~~~~~ai~~lr~~G~~v~~~lI~GLPg 308 (564)
......+++.++.|+++|++++. .|+||+++++++.+.++| +.++.+++++.++++|+++++.+|+|+ |
T Consensus 135 ~~ei~~~~~~~g~~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~Gl-g 213 (351)
T TIGR03700 135 AVEIHHFSKISGLPTEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLYGH-I 213 (351)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeC-C
Confidence 11233467889999999999997 699999999999999976 668889999999999999999999998 9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCeEEEeeeeec----CCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 309 VGVERDLESFREFFESPLFRADGLKIYPTLVI----RGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 309 et~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~----~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
||+++..+++..+. +++++..-+..+.|. +||||... .+.+++.++...+++.+.-.+|.
T Consensus 214 Et~edrv~~l~~Lr---~l~~~~~~f~~fiP~~f~~~~tpl~~~----~~~~~~~~e~lr~iA~~Rl~l~~ 277 (351)
T TIGR03700 214 ETPAHRVDHMLRLR---ELQDETGGFQAFIPLAFQPDNNRLNRL----LAKGPTGLDDLKTLAVSRLYLDN 277 (351)
T ss_pred CCHHHHHHHHHHHH---HhhHhhCCceEEEeecccCCCCcccCC----CCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999998887 456666566666666 59998431 23568999999999998888874
No 71
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.64 E-value=9.2e-15 Score=153.80 Aligned_cols=192 Identities=12% Similarity=0.089 Sum_probs=140.4
Q ss_pred cchHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCCCHHHH---------HHHHHHHHHHhcCCCchhhHHHhhhcccCC
Q 008466 159 YNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYR---------DYFIRNLHDALSGHTSANVEEAVTYSEHGA 229 (564)
Q Consensus 159 ~~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l~~~~l---------~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~ 229 (564)
..+..+++.+..++.+.|. -+.+|.||.+..+..++. ..+++.+++... .+.
T Consensus 40 ~ls~eei~~~~~~~~~~G~----~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i~~i~~--------~~~------- 100 (336)
T PRK06245 40 LLSPEEVKEILRRGADAGC----TEALFTFGEVPDESYERIKEQLAEMGYSSILEYLYDLCE--------LAL------- 100 (336)
T ss_pred cCCHHHHHHHHHHHHHCCC----CEEEEecCCCCccchhhhhhhhhhhhHHHHHHHHHHHHH--------HHh-------
Confidence 4456777777777777774 244577776655542221 222333322111 000
Q ss_pred cccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCC---CCCHHHHHHHHHHHHHcCCcEEEEEecCC
Q 008466 230 TKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNR---GHTVAAVADCFCLAKDAGFKVVAHMMPDL 306 (564)
Q Consensus 230 ~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~R---ght~~~~~~ai~~lr~~G~~v~~~lI~GL 306 (564)
..++...++|..++++.++.|+++|+. +.+.+||+++.+++.++| +++.++.+++++.+++.|+++..++|+|+
T Consensus 101 --~~g~~~~~~~~~lt~e~i~~Lk~ag~~-l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~~a~~~Gi~~~~~~i~G~ 177 (336)
T PRK06245 101 --EEGLLPHTNAGILTREEMEKLKEVNAS-MGLMLEQTSPRLLNTVHRGSPGKDPELRLETIENAGKLKIPFTTGILIGI 177 (336)
T ss_pred --hcCCCccccCCCCCHHHHHHHHHhCCC-CCCCccccchhhHHhhccCCCCCCHHHHHHHHHHHHHcCCceeeeeeeEC
Confidence 012334588999999999999999864 577789999999987754 66789999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcC-CCC-CCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEE
Q 008466 307 PNVGVERDLESFREFFES-PLF-RADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRV 379 (564)
Q Consensus 307 Pget~e~~~~t~~~~~~~-~~l-~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri 379 (564)
|||.+++.+++..+.+. ... +++.+.++++.|.+||++.. ..+++.++..++++.+...+|+.+.+
T Consensus 178 -gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~------~~~~s~~e~l~~ia~~Rl~l~~~i~i 245 (336)
T PRK06245 178 -GETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMEN------HPEPSLEEMLRVVALARLILPPDISI 245 (336)
T ss_pred -CCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCccc------CCCcCHHHHHHHHHHHHHHCCCCceE
Confidence 99999999988887654 122 36889999999999999852 34688999999999999999876543
No 72
>PRK06267 hypothetical protein; Provisional
Probab=99.64 E-value=1.3e-14 Score=153.47 Aligned_cols=173 Identities=12% Similarity=0.071 Sum_probs=136.4
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEE-EEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE
Q 008466 160 NPYVQARSRIDQLKRLGHSVDKVEF-ILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE 238 (564)
Q Consensus 160 ~~y~~~l~r~~~l~~~g~~~~kve~-I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE 238 (564)
.+..+++.+...+.+.| ++. ++.||.+ ++.+.++.+++.+..... ..+.
T Consensus 63 ~s~eeI~eea~~~~~~G-----v~~~~lsgG~~--~~~~el~~i~e~I~~~~~-----------------------~~~~ 112 (350)
T PRK06267 63 RRVESILAEAILMKRIG-----WKLEFISGGYG--YTTEEINDIAEMIAYIQG-----------------------CKQY 112 (350)
T ss_pred CCHHHHHHHHHHHHHcC-----CCEEEEecCCC--CCHHHHHHHHHHHHHhhC-----------------------CceE
Confidence 35566666666666666 333 3567766 667788888887765321 1122
Q ss_pred eeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHH
Q 008466 239 TRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESF 318 (564)
Q Consensus 239 trPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~ 318 (564)
.+...++.+.+..+...|+ ..|+||.+++++..++++++.++..++++.++++|+++++++|+|+ |++.+++.+++
T Consensus 113 ~s~G~~d~~~~~~~~l~Gv---~g~~ET~~~~~~~~i~~~~s~ed~~~~l~~ak~aGi~v~~g~IiGl-gEt~ed~~~~l 188 (350)
T PRK06267 113 LNVGIIDFLNINLNEIEGV---VGAVETVNPKLHREICPGKPLDKIKEMLLKAKDLGLKTGITIILGL-GETEDDIEKLL 188 (350)
T ss_pred eecccCCHHHHhhccccCc---eeeeecCCHHHHHhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEeC-CCCHHHHHHHH
Confidence 3344456666666666665 5699999999999999999999999999999999999999999997 99999999998
Q ss_pred HHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 319 REFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 319 ~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
+.+. +++++.+.++++.|.||||++. .+++++++++.+++.+.-.+|.
T Consensus 189 ~~l~---~l~~d~v~~~~L~P~pGTp~~~------~~~~s~~e~lr~ia~~Rl~lP~ 236 (350)
T PRK06267 189 NLIE---ELDLDRITFYSLNPQKGTIFEN------KPSVTTLEYMNWVSSVRLNFPK 236 (350)
T ss_pred HHHH---HcCCCEEEEEeeeECCCCcCCC------CCCCCHHHHHHHHHHHHHHCCC
Confidence 8886 5789999999999999999864 4678999999999999888874
No 73
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=99.62 E-value=1.6e-14 Score=151.21 Aligned_cols=136 Identities=13% Similarity=0.082 Sum_probs=113.1
Q ss_pred EEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCC----CHHHHHHHHHHHHHcCCcEEEEEecCCCCCC
Q 008466 235 MTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGH----TVAAVADCFCLAKDAGFKVVAHMMPDLPNVG 310 (564)
Q Consensus 235 itiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rgh----t~~~~~~ai~~lr~~G~~v~~~lI~GLPget 310 (564)
+...++|..++++.+..|+++|+. +.+.+||.++.+++.+++.| +.++.+++++.+++.|+++++++|+|+ |||
T Consensus 99 ~~~~~~~g~lt~e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~~~Gi~~~s~~i~G~-gEt 176 (322)
T TIGR03550 99 LLPHTNPGVMSRDELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAGRLKIPFTTGILIGI-GET 176 (322)
T ss_pred CccccCCCCCCHHHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHHHcCCCccceeeEeC-CCC
Confidence 344578889999999999999986 48999999999877666555 568899999999999999999999997 999
Q ss_pred HHHHHHHHHHHhcC--CCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceE
Q 008466 311 VERDLESFREFFES--PLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTR 378 (564)
Q Consensus 311 ~e~~~~t~~~~~~~--~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~ir 378 (564)
.++..+++..+.++ ...+++.+.+.++.|.|||||+. .++++..+.+.+++.+.-.+|+...
T Consensus 177 ~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~------~~~~s~~e~lr~iAv~Rl~l~~~~~ 240 (322)
T TIGR03550 177 REERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMEN------HPEPSLEEMLRTVAVARLILPPDIS 240 (322)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccC------CCCCCHHHHHHHHHHHHHHcCCCCe
Confidence 99999998887643 11226677888999999999863 3568999999999999888976543
No 74
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.60 E-value=2.7e-14 Score=131.99 Aligned_cols=135 Identities=24% Similarity=0.272 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHH-HHcCCCCCcEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE
Q 008466 161 PYVQARSRIDQL-KRLGHSVDKVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE 238 (564)
Q Consensus 161 ~y~~~l~r~~~l-~~~g~~~~kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE 238 (564)
+-.+++.....+ ...| +..+ ++||+|+..+... .++..+.+.. .....+++.
T Consensus 29 ~~e~i~~~~~~~~~~~~-----~~~i~~~~gep~~~~~~~--~~~~~~~~~~-------------------~~~~~i~~~ 82 (166)
T PF04055_consen 29 SPEEILEEIKELKQDKG-----VKEIFFGGGEPTLHPDFI--ELLELLRKIK-------------------KRGIRISIN 82 (166)
T ss_dssp HHHHHHHHHHHHHHHTT-----HEEEEEESSTGGGSCHHH--HHHHHHHHCT-------------------CTTEEEEEE
T ss_pred CHHHHHHHHHHHhHhcC-----CcEEEEeecCCCcchhHH--HHHHHHHHhh-------------------ccccceeee
Confidence 344444444555 3433 5555 6899998887642 2333333321 134789999
Q ss_pred eeCCCCCHHHHHHHHHcCCCeEEEccCCCCHH-HHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHH
Q 008466 239 TRPDYCLGPHLRQMLSYGCTRLEIGVQSTYED-VARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLES 317 (564)
Q Consensus 239 trPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~-vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t 317 (564)
|++...+++.++.|+++|+++|.+|+||.+++ +++.++++++.+++.++++.++++|++....+|+|+||+|.+++.++
T Consensus 83 t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~i~~~~~~~~~e~~~~ 162 (166)
T PF04055_consen 83 TNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIPRVIIFIVGLPGENDEEIEET 162 (166)
T ss_dssp EESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHH
T ss_pred ccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHH
Confidence 99998889999999999999999999999999 99999999999999999999999999888899999999999998888
Q ss_pred HHHH
Q 008466 318 FREF 321 (564)
Q Consensus 318 ~~~~ 321 (564)
++++
T Consensus 163 ~~~i 166 (166)
T PF04055_consen 163 IRFI 166 (166)
T ss_dssp HHHH
T ss_pred hCcC
Confidence 8764
No 75
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=99.56 E-value=2.1e-13 Score=140.74 Aligned_cols=168 Identities=15% Similarity=0.092 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCC---CHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe
Q 008466 163 VQARSRIDQLKRLGHSVDKVEFILMGGTFMSL---PADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET 239 (564)
Q Consensus 163 ~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l---~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt 239 (564)
.+.+.....+...|. -+.++.|++-..+ ..+.+.++++.|++..+ ++.++.
T Consensus 94 eei~~~a~~~~~~Gl----kevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p----------------------~i~Iev 147 (302)
T TIGR00510 94 EEPAKLAETIKDMGL----KYVVITSVDRDDLEDGGASHLAECIEAIREKLP----------------------NIKIET 147 (302)
T ss_pred HHHHHHHHHHHHCCC----CEEEEEeecCCCcccccHHHHHHHHHHHHhcCC----------------------CCEEEE
Confidence 334444445566663 1334544432222 34566777777765433 123443
Q ss_pred -eCCCC-CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHH
Q 008466 240 -RPDYC-LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDL 315 (564)
Q Consensus 240 -rPd~i-~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~ 315 (564)
.||.. +.+.++.|+++|++.+..++||. +++++.|+|+++.++.++.++.+++. |+.+.+++|+|| |||.+++.
T Consensus 148 l~~d~~g~~e~l~~l~~aG~dv~~hnlEt~-~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGl-GETeee~~ 225 (302)
T TIGR00510 148 LVPDFRGNIAALDILLDAPPDVYNHNLETV-ERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGL-GETNEEIK 225 (302)
T ss_pred eCCcccCCHHHHHHHHHcCchhhcccccch-HHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecceEEEEC-CCCHHHHH
Confidence 44422 68899999999999999999998 88999999999999999999999998 899999999999 99999999
Q ss_pred HHHHHHhcCCCCCCCeEEEeeee-e-cCCChhHHHHHcCCCCCCCHHHHHHHHH
Q 008466 316 ESFREFFESPLFRADGLKIYPTL-V-IRGTGLYELWKTGRYRNYPPEQLVDIVA 367 (564)
Q Consensus 316 ~t~~~~~~~~~l~pd~i~iy~l~-v-~~GT~L~~~~~~G~~~~~~~ee~~~~~~ 367 (564)
++++.+. +++++.+.+.+++ | .+++|+.+ |..++.-+..+.++
T Consensus 226 etl~~Lr---elg~d~v~igqYl~p~~~~~~v~~------~~~p~~f~~~~~~a 270 (302)
T TIGR00510 226 QTLKDLR---DHGVTMVTLGQYLRPSRRHLPVKR------YVSPEEFDYYRSVA 270 (302)
T ss_pred HHHHHHH---hcCCCEEEeecccCCCCCCCcccc------CCCHHHHHHHHHHH
Confidence 9999997 6789999999865 5 56777765 43444444444444
No 76
>PRK12928 lipoyl synthase; Provisional
Probab=99.56 E-value=1.8e-13 Score=140.88 Aligned_cols=156 Identities=16% Similarity=0.138 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCC---CCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEE
Q 008466 161 PYVQARSRIDQLKRLGHSVDKVEFILMGGTFMS---LPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTI 237 (564)
Q Consensus 161 ~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~---l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eiti 237 (564)
+..+.+.....+...|. -+.++.||+-.. .+.+++.++++.|++..+ .+.+
T Consensus 88 ~~eei~~~a~~~~~~G~----keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p----------------------~~~I 141 (290)
T PRK12928 88 DPDEPERVAEAVAALGL----RYVVLTSVARDDLPDGGAAHFVATIAAIRARNP----------------------GTGI 141 (290)
T ss_pred CHHHHHHHHHHHHHCCC----CEEEEEEEeCCcccccCHHHHHHHHHHHHhcCC----------------------CCEE
Confidence 34455544445666662 133344443222 345678888888876443 2344
Q ss_pred Ee-eCCCC--CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcC--CcEEEEEecCCCCCCHH
Q 008466 238 ET-RPDYC--LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAG--FKVVAHMMPDLPNVGVE 312 (564)
Q Consensus 238 Et-rPd~i--~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G--~~v~~~lI~GLPget~e 312 (564)
+. .|+.+ ..+.|..|+++|+..+..++||. +++++.|+|++|.++..+.++.+++.| +.+.++||+|+ |||.+
T Consensus 142 ~~ltp~~~~~~~e~L~~l~~Ag~~i~~hnlEt~-~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~e 219 (290)
T PRK12928 142 EVLTPDFWGGQRERLATVLAAKPDVFNHNLETV-PRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETED 219 (290)
T ss_pred EEeccccccCCHHHHHHHHHcCchhhcccCcCc-HHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHH
Confidence 53 66665 57899999999999999999985 999999999999999999999999999 99999999999 99999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEeeeee--cCCChhHH
Q 008466 313 RDLESFREFFESPLFRADGLKIYPTLV--IRGTGLYE 347 (564)
Q Consensus 313 ~~~~t~~~~~~~~~l~pd~i~iy~l~v--~~GT~L~~ 347 (564)
++.++++.+. ++++|.+.+.+++. ....|+.+
T Consensus 220 d~~etl~~Lr---el~~d~v~i~~Yl~p~~~~~~v~~ 253 (290)
T PRK12928 220 EVIETLRDLR---AVGCDRLTIGQYLRPSLAHLPVQR 253 (290)
T ss_pred HHHHHHHHHH---hcCCCEEEEEcCCCCCccCCceee
Confidence 9999999997 68899999998875 45666654
No 77
>PRK00955 hypothetical protein; Provisional
Probab=99.51 E-value=5.9e-13 Score=147.81 Aligned_cols=115 Identities=15% Similarity=0.113 Sum_probs=91.7
Q ss_pred EEEEeeCCCC----CHHHHHHHHHcCC-CeEEEccCCCCHHHHHhcCCCCCHHHHHHH----HHHHHHcCCc--EEEEEe
Q 008466 235 MTIETRPDYC----LGPHLRQMLSYGC-TRLEIGVQSTYEDVARDTNRGHTVAAVADC----FCLAKDAGFK--VVAHMM 303 (564)
Q Consensus 235 itiEtrPd~i----~~e~L~~L~~~G~-~rvsiGvQS~~d~vL~~i~Rght~~~~~~a----i~~lr~~G~~--v~~~lI 303 (564)
|+...|+|.+ +++.++.|.+..+ ..+.||+||+++++|+.|||+ +.+++.+. .+.+++.|++ +..+||
T Consensus 407 isSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~VLk~M~K~-~~~~~~~f~~~~~~i~~~~G~~~~I~~yfI 485 (620)
T PRK00955 407 IRSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDRVLKLMGKP-SREVYDKFVKKFDRINKKLGKKQYLVPYLM 485 (620)
T ss_pred eecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChHHHHHhCCC-CHHHHHHHHHHHHHhhhhcCCCccEEEEEE
Confidence 3444577774 3457888887643 479999999999999999998 54444333 3556678887 778999
Q ss_pred cCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCC
Q 008466 304 PDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGR 353 (564)
Q Consensus 304 ~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~ 353 (564)
+|+||||.+++.++++++. +++++.+.+.+++|.|||+-+.++-.|.
T Consensus 486 vGfPGETeEDf~et~eflk---el~~~~~qV~~fTP~PGT~At~Myytg~ 532 (620)
T PRK00955 486 SSHPGSTLEDAIELAEYTK---DLGYQPEQVQDFYPTPGTLSTTMYYTGL 532 (620)
T ss_pred EECCCCCHHHHHHHHHHHH---HcCCCcceeeeeecCCCcchhhccccCC
Confidence 9999999999999999986 5778888999999999999999876664
No 78
>PRK07360 FO synthase subunit 2; Reviewed
Probab=99.51 E-value=7e-13 Score=141.37 Aligned_cols=184 Identities=11% Similarity=0.077 Sum_probs=136.7
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEE-EEcC-CCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE
Q 008466 161 PYVQARSRIDQLKRLGHSVDKVEFI-LMGG-TFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE 238 (564)
Q Consensus 161 ~y~~~l~r~~~l~~~g~~~~kve~I-~~GG-Tpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE 238 (564)
+..+++....+..+.| +..+ +.|| .|..-..+++.++++.+++.++. +.+..-
T Consensus 92 s~eeI~~~a~~a~~~G-----~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~--------------------i~i~a~ 146 (371)
T PRK07360 92 TIAEILEKAAEAVKRG-----ATEVCIQGGLHPAADSLEFYLEILEAIKEEFPD--------------------IHLHAF 146 (371)
T ss_pred CHHHHHHHHHHHHhCC-----CCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCC--------------------cceeeC
Confidence 4456666666667777 3444 4466 45433478888899999876542 111110
Q ss_pred ---------eeCCCCCHHHHHHHHHcCCCeEE-EccCCCCHHHHHhcCCC-CCHHHHHHHHHHHHHcCCcEEEEEecCCC
Q 008466 239 ---------TRPDYCLGPHLRQMLSYGCTRLE-IGVQSTYEDVARDTNRG-HTVAAVADCFCLAKDAGFKVVAHMMPDLP 307 (564)
Q Consensus 239 ---------trPd~i~~e~L~~L~~~G~~rvs-iGvQS~~d~vL~~i~Rg-ht~~~~~~ai~~lr~~G~~v~~~lI~GLP 307 (564)
......+.+.++.|+++|++++. -|.+++++++.+.+..+ .|.++.+++++.++++|+++++.+|+|+
T Consensus 147 s~~ei~~~~~~~G~~~~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~- 225 (371)
T PRK07360 147 SPMEVYFAAREDGLSYEEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGH- 225 (371)
T ss_pred CHHHHHHHHhhcCCCHHHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeC-
Confidence 03445678899999999999984 56788889999888775 5999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecC----CChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 308 NVGVERDLESFREFFESPLFRADGLKIYPTLVIR----GTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 308 get~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~----GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
|||+++..+.+..+. +++++...+.++.|.+ ||||+.... ...+.+..+.+.+++.+.-.+|.
T Consensus 226 gEt~edrv~~l~~lr---~l~~~~~g~~~fIp~~f~~~~Tpl~~~~~--~~~~~~~~~~lr~iAi~Rl~lp~ 292 (371)
T PRK07360 226 VETPEHRIDHLLILR---EIQQETGGITEFVPLPFVHENAPLYERGR--VKGGAPGLEDLLLYAVSRIFLGN 292 (371)
T ss_pred CCCHHHHHHHHHHHH---HhchhhCCeeEEEeccccCCCCccccccc--cCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999998887 5778887777777744 999975321 11235667779999988888886
No 79
>PRK08444 hypothetical protein; Provisional
Probab=99.49 E-value=1.2e-12 Score=138.36 Aligned_cols=204 Identities=11% Similarity=0.123 Sum_probs=152.8
Q ss_pred cCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEE-EcCCCCCCCHHH
Q 008466 120 ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFIL-MGGTFMSLPADY 198 (564)
Q Consensus 120 PfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~-~GGTpt~l~~~~ 198 (564)
..|...|.|| .|.... + .+ + ...-+..+++.+..+..+.|.. +..+ +|+.|. .+.++
T Consensus 57 N~C~~~C~FC------af~~~~----~-~~---~---~y~ls~eeI~~~a~~a~~~G~~----ei~iv~G~~p~-~~~e~ 114 (353)
T PRK08444 57 NICADVCKFC------AFSAHR----K-NP---N---PYTMSHEEILEIVKNSVKRGIK----EVHIVSAHNPN-YGYEW 114 (353)
T ss_pred cccccCCccC------CCccCC----C-CC---c---cccCCHHHHHHHHHHHHHCCCC----EEEEeccCCCC-CCHHH
Confidence 4577999999 664111 1 11 0 0122446666666667777731 3334 555554 48889
Q ss_pred HHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE--------e-eCCCCCHHHHHHHHHcCCCeEEE-ccCCCC
Q 008466 199 RDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE--------T-RPDYCLGPHLRQMLSYGCTRLEI-GVQSTY 268 (564)
Q Consensus 199 l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE--------t-rPd~i~~e~L~~L~~~G~~rvsi-GvQS~~ 268 (564)
..++++.|++.++. +.+..- + .-....+|.+..|+++|++++.- |.|.++
T Consensus 115 y~e~ir~Ik~~~p~--------------------i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~ 174 (353)
T PRK08444 115 YLEIFKKIKEAYPN--------------------LHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFD 174 (353)
T ss_pred HHHHHHHHHHHCCC--------------------ceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccCCCCCchhcC
Confidence 99999999987652 111110 1 22234679999999999999988 699999
Q ss_pred HHHHHhcCCCCCH-HHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeec----CCC
Q 008466 269 EDVARDTNRGHTV-AAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVI----RGT 343 (564)
Q Consensus 269 d~vL~~i~Rght~-~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~----~GT 343 (564)
+++.+.+..+|+. ++..+..+.++++|+++++.+|+|++ ||+++..+.+..+. +++.+..-+..+.|. +||
T Consensus 175 ~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~sg~l~G~g-Et~edrv~hl~~Lr---~Lq~~t~gf~~fIp~~f~~~~t 250 (353)
T PRK08444 175 EEVRKKICKGKVSSERWLEIHKYWHKKGKMSNATMLFGHI-ENREHRIDHMLRLR---DLQDKTGGFNAFIPLVYQRENN 250 (353)
T ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEecC-CCHHHHHHHHHHHH---HhccccCCceEEEecccCCCCC
Confidence 9999999997755 78888889999999999999999995 99999999998886 577888888888988 899
Q ss_pred hhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 344 GLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 344 ~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
||.. .++++.++.+..++-+.-.+|.
T Consensus 251 ~l~~------~~~~~~~e~Lr~iAi~Rl~L~~ 276 (353)
T PRK08444 251 YLKV------EKFPSSQEILKTIAISRILLDN 276 (353)
T ss_pred cCCC------CCCCCHHHHHHHHHHHHHhcCC
Confidence 9852 4568999999999988888864
No 80
>PRK05481 lipoyl synthase; Provisional
Probab=99.49 E-value=1.7e-12 Score=133.84 Aligned_cols=150 Identities=15% Similarity=0.096 Sum_probs=116.0
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCC---CCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEE
Q 008466 160 NPYVQARSRIDQLKRLGHSVDKVEFILMGGTFM---SLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMT 236 (564)
Q Consensus 160 ~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt---~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eit 236 (564)
.+..+++.....+...|. -+.++.||+-. ..+.+++.++++.|.+.++. +.+.
T Consensus 80 ~~~eeI~~ea~~l~~~G~----kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p~--------------------irI~ 135 (289)
T PRK05481 80 LDPDEPERVAEAVARMGL----KYVVITSVDRDDLPDGGAQHFAETIRAIRELNPG--------------------TTIE 135 (289)
T ss_pred CCHHHHHHHHHHHHHCCC----CEEEEEEeeCCCcccccHHHHHHHHHHHHhhCCC--------------------cEEE
Confidence 445666666667777773 23445555422 23456777888877764431 1233
Q ss_pred EEeeCCCC-CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHH
Q 008466 237 IETRPDYC-LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVER 313 (564)
Q Consensus 237 iEtrPd~i-~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~ 313 (564)
+- .|+.. ..+.|..|+++|+..+..+.+|. +++++.|+|++|.++..++++.+++. |+.+.+++|+|+ |||.++
T Consensus 136 ~l-~~~~~~~~e~L~~l~~ag~~i~~~~~ets-~~vlk~m~r~~t~e~~le~i~~ar~~~pgi~~~t~~IvGf-GET~ed 212 (289)
T PRK05481 136 VL-IPDFRGRMDALLTVLDARPDVFNHNLETV-PRLYKRVRPGADYERSLELLKRAKELHPGIPTKSGLMVGL-GETDEE 212 (289)
T ss_pred EE-ccCCCCCHHHHHHHHhcCcceeeccccCh-HHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeEeeeeEEEC-CCCHHH
Confidence 32 33333 35788889999999999999995 89999999999999999999999999 999999999999 999999
Q ss_pred HHHHHHHHhcCCCCCCCeEEEeeeee
Q 008466 314 DLESFREFFESPLFRADGLKIYPTLV 339 (564)
Q Consensus 314 ~~~t~~~~~~~~~l~pd~i~iy~l~v 339 (564)
+.++++.+. ++++|.+.++++.+
T Consensus 213 ~~~tl~~lr---el~~d~v~if~Ys~ 235 (289)
T PRK05481 213 VLEVMDDLR---AAGVDILTIGQYLQ 235 (289)
T ss_pred HHHHHHHHH---hcCCCEEEEEccCC
Confidence 999999987 58899999999887
No 81
>PLN02428 lipoic acid synthase
Probab=99.44 E-value=7.3e-12 Score=131.10 Aligned_cols=128 Identities=14% Similarity=0.107 Sum_probs=106.2
Q ss_pred EEEEcCCC---CCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe-eCCCC-CHHHHHHHHHcCCC
Q 008466 184 FILMGGTF---MSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET-RPDYC-LGPHLRQMLSYGCT 258 (564)
Q Consensus 184 ~I~~GGTp---t~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt-rPd~i-~~e~L~~L~~~G~~ 258 (564)
.++.+|+- .....+++.++++.|++..+ .+.++. .||.+ +++.|+.|+++|++
T Consensus 150 vvltSg~rddl~D~ga~~~~elir~Ir~~~P----------------------~i~Ie~L~pdf~~d~elL~~L~eAG~d 207 (349)
T PLN02428 150 VVLTSVDRDDLPDGGSGHFAETVRRLKQLKP----------------------EILVEALVPDFRGDLGAVETVATSGLD 207 (349)
T ss_pred EEEEEcCCCCCCcccHHHHHHHHHHHHHhCC----------------------CcEEEEeCccccCCHHHHHHHHHcCCC
Confidence 34555543 23456677777777775433 356665 68766 89999999999999
Q ss_pred eEEEccCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEe
Q 008466 259 RLEIGVQSTYEDVARDTN-RGHTVAAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIY 335 (564)
Q Consensus 259 rvsiGvQS~~d~vL~~i~-Rght~~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy 335 (564)
.+..++|| .+++++.|+ ++++.++.+++++.+++. |+.+.++||+|| |||.+++.++++.+. ++++|.+.+-
T Consensus 208 ~i~hnlET-v~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~~Lr---elgvd~vtig 282 (349)
T PLN02428 208 VFAHNIET-VERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTMEDLR---AAGVDVVTFG 282 (349)
T ss_pred EEccCccC-cHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHHHHH---HcCCCEEeec
Confidence 99999998 789999999 799999999999999999 999999999999 999999999999987 6789999987
Q ss_pred eee
Q 008466 336 PTL 338 (564)
Q Consensus 336 ~l~ 338 (564)
+++
T Consensus 283 qyL 285 (349)
T PLN02428 283 QYL 285 (349)
T ss_pred ccc
Confidence 654
No 82
>PRK01254 hypothetical protein; Provisional
Probab=99.42 E-value=6.5e-12 Score=138.85 Aligned_cols=112 Identities=13% Similarity=0.071 Sum_probs=89.6
Q ss_pred EEEEEe-eCCCC---CHHHHHHHHHcCC-CeEEEccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHc-CCc--EEEEEe
Q 008466 234 GMTIET-RPDYC---LGPHLRQMLSYGC-TRLEIGVQSTYEDVARDTNRG--HTVAAVADCFCLAKDA-GFK--VVAHMM 303 (564)
Q Consensus 234 eitiEt-rPd~i---~~e~L~~L~~~G~-~rvsiGvQS~~d~vL~~i~Rg--ht~~~~~~ai~~lr~~-G~~--v~~~lI 303 (564)
.+.|-. .|..+ +++.|+.|.+..| ..+.|++||+++++|+.|||+ ++.+++.+.++.+++. |.+ +..+||
T Consensus 485 kVrI~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VLk~M~Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfI 564 (707)
T PRK01254 485 KILIASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDKYSKEAGKEQYLIPYFI 564 (707)
T ss_pred EEEEEcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHHHHhCCCCcccHHHHHHHHHHHHHHCCCCeEEEEeEE
Confidence 344443 34445 4889999999887 499999999999999999997 7889999999999774 654 456999
Q ss_pred cCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecC---CChhHHH
Q 008466 304 PDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIR---GTGLYEL 348 (564)
Q Consensus 304 ~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~---GT~L~~~ 348 (564)
+|+||+|.+++.++++++.+. .+.+..+. .++|.| ||.||.-
T Consensus 565 vGhPGeTeeDf~eLaefLkel-~f~~eQVQ--~FTPtP~t~~T~MYyt 609 (707)
T PRK01254 565 SAHPGTTDEDMVNLALWLKKN-RFRLDQVQ--NFYPSPMANATTMYYT 609 (707)
T ss_pred EECCCCCHHHHHHHHHHHHHh-CCCcceee--eeecCCCcCchHHHhc
Confidence 999999999999999888653 45666655 567999 7777753
No 83
>PRK05926 hypothetical protein; Provisional
Probab=99.40 E-value=1.4e-11 Score=130.83 Aligned_cols=206 Identities=11% Similarity=0.099 Sum_probs=145.4
Q ss_pred cCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCCCCHHH
Q 008466 120 ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMSLPADY 198 (564)
Q Consensus 120 PfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~l~~~~ 198 (564)
..|...|.|| .|...+ +.. .....+..+++.+..+. ..| +..| +.||....++.++
T Consensus 76 n~C~~dC~FC------af~~~~----~~~-------~~~~ls~eeI~~~a~~a-~~G-----~~ei~iv~G~~p~~~~e~ 132 (370)
T PRK05926 76 NFCQFNCTFC------SFYAKP----GDP-------KGWFYTPDQLVQSIKEN-PSP-----ITETHIVAGCFPSCNLAY 132 (370)
T ss_pred CCCCCCCCcc------ccccCC----CCc-------ccccCCHHHHHHHHHHH-hcC-----CCEEEEEeCcCCCCCHHH
Confidence 3466899999 664221 111 11223344555554444 445 3334 4455555689999
Q ss_pred HHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe---------eCCCCCHHHHHHHHHcCCCeEEE-ccCCCC
Q 008466 199 RDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET---------RPDYCLGPHLRQMLSYGCTRLEI-GVQSTY 268 (564)
Q Consensus 199 l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt---------rPd~i~~e~L~~L~~~G~~rvsi-GvQS~~ 268 (564)
..++++.|++.++. +.+..-+ .....+++.++.|+++|++++.. |.|+++
T Consensus 133 ~~e~i~~Ik~~~p~--------------------i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~ 192 (370)
T PRK05926 133 YEELFSKIKQNFPD--------------------LHIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEILV 192 (370)
T ss_pred HHHHHHHHHHhCCC--------------------eeEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhcC
Confidence 99999999987752 1111111 11223578899999999999997 599999
Q ss_pred HHHHHhcCC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeee----cCCC
Q 008466 269 EDVARDTNR-GHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLV----IRGT 343 (564)
Q Consensus 269 d~vL~~i~R-ght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v----~~GT 343 (564)
+++++.+.. +.|.++.+++++.++++|+++++.+|+|. |||+++..+.+..+. +++++.+-|.++.| .++|
T Consensus 193 e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~sgmi~G~-gEt~edrv~~l~~Lr---~Lq~~t~gf~~fIp~~f~~~~t 268 (370)
T PRK05926 193 DEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNATMLCYH-RETPEDIVTHMSKLR---ALQDKTSGFKNFILLKFASENN 268 (370)
T ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccCceEEeC-CCCHHHHHHHHHHHH---hcCCccCCeeeeEecccCCCCC
Confidence 999998874 67889999999999999999998888886 999999999998886 68889988888887 6789
Q ss_pred hhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 344 GLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 344 ~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
+|+... . .....+.++...+++-+.-+|+
T Consensus 269 ~l~~~~-~-~~~~~~~~~~lr~~AvaRl~l~ 297 (370)
T PRK05926 269 ALGKRL-R-KMGSRHSIPPASIIAVARLFLD 297 (370)
T ss_pred cccccc-c-ccCCCChHHHHHHHHHHHHhcC
Confidence 885311 0 1223566777888887777776
No 84
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.39 E-value=3.4e-11 Score=126.01 Aligned_cols=164 Identities=16% Similarity=0.145 Sum_probs=129.6
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe-----eCCCCCHHHHHHHHHcCC
Q 008466 183 EFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET-----RPDYCLGPHLRQMLSYGC 257 (564)
Q Consensus 183 e~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt-----rPd~i~~e~L~~L~~~G~ 257 (564)
+.++.||+|+.++.+.+.++++.+.+ .. ....+++.| +|..++++.++.|+++|+
T Consensus 139 ~VilSGGDPl~~~~~~L~~ll~~l~~-i~-------------------~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~ 198 (321)
T TIGR03822 139 EVILTGGDPLVLSPRRLGDIMARLAA-ID-------------------HVKIVRFHTRVPVADPARVTPALIAALKTSGK 198 (321)
T ss_pred EEEEeCCCcccCCHHHHHHHHHHHHh-CC-------------------CccEEEEeCCCcccChhhcCHHHHHHHHHcCC
Confidence 45588999999999999999998875 22 112355555 688899999999999995
Q ss_pred CeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEE-EEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEee
Q 008466 258 TRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA-HMMPDLPNVGVERDLESFREFFESPLFRADGLKIYP 336 (564)
Q Consensus 258 ~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~-~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~ 336 (564)
.+.|++++.+++.+ .+++.+|++.++++|+.+.+ ..+..-.+++.+.+.+.++.++ +++++...+|.
T Consensus 199 -~v~i~l~~~h~~el--------~~~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~---~~gv~pyyl~~ 266 (321)
T TIGR03822 199 -TVYVALHANHAREL--------TAEARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFV---ECRIKPYYLHH 266 (321)
T ss_pred -cEEEEecCCChhhc--------CHHHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHH---hcCCeeEEEEe
Confidence 58999999876543 27899999999999999765 4454446999999988888887 57888899999
Q ss_pred eeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCCh
Q 008466 337 TLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPM 388 (564)
Q Consensus 337 l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~ 388 (564)
+.+.+||..++ .+.++..+++..+...++-... .|..+|+|.
T Consensus 267 ~~p~~g~~~f~---------~~~~~~~~i~~~l~~~~~g~~~-p~~v~~~~~ 308 (321)
T TIGR03822 267 LDLAPGTAHFR---------VTIEEGQALVRALRGRISGLAQ-PTYVLDIPG 308 (321)
T ss_pred cCCCCCccccc---------CcHHHHHHHHHHHHHhCCCCcc-eeEEEeCCC
Confidence 99999985432 7889999999999998875544 566667665
No 85
>PRK05927 hypothetical protein; Provisional
Probab=99.37 E-value=1.1e-11 Score=130.76 Aligned_cols=215 Identities=16% Similarity=0.169 Sum_probs=148.9
Q ss_pred cCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCCCHHHH
Q 008466 120 ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYR 199 (564)
Q Consensus 120 PfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l~~~~l 199 (564)
..|..+|.|| .|...++ . + ....-...+++....+....|. -+..+.||.....+.+++
T Consensus 53 n~C~~~C~fC------af~~~~~----~-~------~~y~ls~eei~~~a~~~~~~G~----~~i~i~gG~~p~~~~e~~ 111 (350)
T PRK05927 53 NICKIDCTFC------AFYRKPH----S-S------DAYLLSFDEFRSLMQRYVSAGV----KTVLLQGGVHPQLGIDYL 111 (350)
T ss_pred hhhhcCCccC------CccCCCC----C-c------cccccCHHHHHHHHHHHHHCCC----CEEEEeCCCCCCCCHHHH
Confidence 3577999999 6641111 1 0 0112344556665666666663 133356776666899999
Q ss_pred HHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEE-EEeeCCCCCHHHHHHHHHcCCCeEEE-ccCCCCHHHHHhcCC
Q 008466 200 DYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMT-IETRPDYCLGPHLRQMLSYGCTRLEI-GVQSTYEDVARDTNR 277 (564)
Q Consensus 200 ~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eit-iEtrPd~i~~e~L~~L~~~G~~rvsi-GvQS~~d~vL~~i~R 277 (564)
.++++.|++.++......+ ..+++. +.......++|.++.|+++|+.++-= |.|++++.+.+.+..
T Consensus 112 ~~~i~~ik~~~p~l~~~~~------------s~~ei~~~~~~~G~~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p 179 (350)
T PRK05927 112 EELVRITVKEFPSLHPHFF------------SAVEIAHAAQVSGISTEQALERLWDAGQRTIPGGGAEILSERVRKIISP 179 (350)
T ss_pred HHHHHHHHHHCCCCcccCC------------CHHHHHHHHHhcCCCHHHHHHHHHHcCcccCCCCCchhCCHHHhhccCC
Confidence 9999999988753210000 001121 11334667899999999999988876 899999999998887
Q ss_pred CC-CHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeec----CCChhHHHHHcC
Q 008466 278 GH-TVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVI----RGTGLYELWKTG 352 (564)
Q Consensus 278 gh-t~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~----~GT~L~~~~~~G 352 (564)
+. +.++-++.++.+++.|+++++.+|+|+ |||+++..+.+..+.++ +-+.--|.++.+. +||||...
T Consensus 180 ~k~~~~~rl~~i~~A~~lGi~~~sg~l~G~-gEt~e~ri~~l~~Lr~l---qd~~~gf~~fIp~~~~~~~tpl~~~---- 251 (350)
T PRK05927 180 KKMGPDGWIQFHKLAHRLGFRSTATMMFGH-VESPEDILLHLQTLRDA---QDENPGFYSFIPWSYKPGNTALGRR---- 251 (350)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcCceeEEee-CCCHHHHHHHHHHHHHh---hHhhCCeeeeeecCcCCCCCccccC----
Confidence 44 579999999999999999999999999 99999999999888754 3222223333333 47998541
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCC
Q 008466 353 RYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 353 ~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
...+++.++.+..++.+.-.+|.
T Consensus 252 ~~~~~s~~e~Lr~iAv~Rl~lp~ 274 (350)
T PRK05927 252 VPHQASPELYYRILAVARIFLDN 274 (350)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCC
Confidence 11258999999999988888874
No 86
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=99.35 E-value=4.3e-11 Score=125.64 Aligned_cols=202 Identities=17% Similarity=0.281 Sum_probs=146.1
Q ss_pred eEEeecCCCCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCC----CCc
Q 008466 106 VVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHS----VDK 181 (564)
Q Consensus 106 vvavmt~p~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~----~~k 181 (564)
+++=|.+.++||. +-.+.|+||. ...+ |. -.+++-.+++.++..|.+.|.. .+.
T Consensus 183 vi~EiETyRGC~r--~~~ggCSFCt----------Ep~~-g~---------~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ 240 (560)
T COG1031 183 VICEIETYRGCPR--RVSGGCSFCT----------EPVR-GR---------PEFRPPEDVVEEVKALYRAGVRHFRLGRQ 240 (560)
T ss_pred EEEEEeeccCCcc--cccCCCcccc----------CcCc-CC---------cccCCHHHHHHHHHHHHHhccceeeeccc
Confidence 6677777788996 2234699992 1122 32 2456667778878888887632 122
Q ss_pred EEEE-EE----cCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-eeCCCC------CHHHH
Q 008466 182 VEFI-LM----GGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE-TRPDYC------LGPHL 249 (564)
Q Consensus 182 ve~I-~~----GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE-trPd~i------~~e~L 249 (564)
...+ |+ ||+..--+++.+++|.+.+.+..+.. .-+.+- +||.++ +.+.+
T Consensus 241 ~difsy~~~~~g~e~P~PnPealekL~~Gir~~AP~l-------------------~tLHiDNaNP~tIa~yp~eSr~i~ 301 (560)
T COG1031 241 ADIFSYGADDNGGEVPRPNPEALEKLFRGIRNVAPNL-------------------KTLHIDNANPATIARYPEESREIA 301 (560)
T ss_pred cceeeecccccCCCCCCCCHHHHHHHHHHHHhhCCCC-------------------eeeeecCCCchhhhcChHHHHHHH
Confidence 2333 33 34444456899999999999876532 223333 355544 67888
Q ss_pred HHHHHcCC--CeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcC-------Cc---EEEEEecCCCCCCHHHHHHH
Q 008466 250 RQMLSYGC--TRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAG-------FK---VVAHMMPDLPNVGVERDLES 317 (564)
Q Consensus 250 ~~L~~~G~--~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G-------~~---v~~~lI~GLPget~e~~~~t 317 (564)
+.+.++|. |-..+|+||+|+++.+..|-..|.|++.+|++.+.+.| +. -...|++||||||.|.+.-+
T Consensus 302 K~ivky~TpGnVaAfGlEsaDp~V~r~NnL~~spEEvl~AV~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln 381 (560)
T COG1031 302 KVIVKYGTPGNVAAFGLESADPRVARKNNLNASPEEVLEAVEIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELN 381 (560)
T ss_pred HHHHhhCCCCceeeeeccccCHHHHhhccccCCHHHHHHHHHHHHHhcCccCcCCCccccccceeEecCCCccHHHHHhh
Confidence 89999985 99999999999999999999999999999999999875 33 34699999999999987665
Q ss_pred HHHHhcC--CCCCCCeEEEeeeeecCCChhHHH
Q 008466 318 FREFFES--PLFRADGLKIYPTLVIRGTGLYEL 348 (564)
Q Consensus 318 ~~~~~~~--~~l~pd~i~iy~l~v~~GT~L~~~ 348 (564)
.+++.+. ..+-+..|.|-...++|||+++..
T Consensus 382 ~efL~~ild~gllvRRINIRqV~~fpgT~~~~~ 414 (560)
T COG1031 382 YEFLKEILDEGLLVRRINIRQVVVFPGTPMWER 414 (560)
T ss_pred HHHHHHHHhcCceEEEeeeeeEeecCCCchhhh
Confidence 5554432 356788899999999999999753
No 87
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.33 E-value=7.1e-11 Score=124.09 Aligned_cols=156 Identities=16% Similarity=0.165 Sum_probs=113.6
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeE
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rv 260 (564)
++.| |.||.|+..+ .+.++++.+.+.. ....+++.|+.-.++ +.++.|+++|+++|
T Consensus 62 v~~I~~tGGEPllr~--dl~~li~~i~~~~--------------------~l~~i~itTNG~ll~-~~~~~L~~aGl~~v 118 (329)
T PRK13361 62 VRKIRLTGGEPLVRR--GCDQLVARLGKLP--------------------GLEELSLTTNGSRLA-RFAAELADAGLKRL 118 (329)
T ss_pred CCEEEEECcCCCccc--cHHHHHHHHHhCC--------------------CCceEEEEeChhHHH-HHHHHHHHcCCCeE
Confidence 5556 7899997653 3556776665421 112578889876554 68999999999999
Q ss_pred EEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCC-cEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeee
Q 008466 261 EIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGF-KVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLV 339 (564)
Q Consensus 261 siGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~-~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v 339 (564)
.|+++|.++++.+.+.|+.+.+++.++++.++++|+ .+.+..++ +||++.+++.+.++++. +++++ +.+..++|
T Consensus 119 ~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~-~~g~N~~ei~~~~~~~~---~~gi~-~~~ie~mP 193 (329)
T PRK13361 119 NISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVI-LRGQNDDEVLDLVEFCR---ERGLD-IAFIEEMP 193 (329)
T ss_pred EEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEE-ECCCCHHHHHHHHHHHH---hcCCe-EEEEeccc
Confidence 999999999999999999999999999999999999 56655443 57888888888888886 45564 45666666
Q ss_pred cCCChhHHHHHcCCCCCCCHHHHHHHHHHHH
Q 008466 340 IRGTGLYELWKTGRYRNYPPEQLVDIVARIL 370 (564)
Q Consensus 340 ~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~ 370 (564)
..+.. + |..+. .++.++..+.+....
T Consensus 194 ~g~~~--~-~~~~~--~~~~~e~~~~l~~~~ 219 (329)
T PRK13361 194 LGEID--E-RRRAR--HCSSDEVRAIIETRY 219 (329)
T ss_pred CCCcc--c-hhhcc--CcCHHHHHHHHHHhC
Confidence 64322 1 22222 367788777765543
No 88
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=99.29 E-value=2.3e-10 Score=110.27 Aligned_cols=180 Identities=16% Similarity=0.183 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEE-EEcCCCC--CCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe
Q 008466 163 VQARSRIDQLKRLGHSVDKVEFI-LMGGTFM--SLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET 239 (564)
Q Consensus 163 ~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt--~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt 239 (564)
...+.+..++.+.| .+.+ +.||.-+ ..|-+.....++.+++. .++++.+
T Consensus 42 ~~l~k~~~el~kkG-----y~g~llSGGm~srg~VPl~kf~d~lK~lke~-----------------------~~l~ina 93 (275)
T COG1856 42 KSLLKRCMELEKKG-----YEGCLLSGGMDSRGKVPLWKFKDELKALKER-----------------------TGLLINA 93 (275)
T ss_pred HHHHHHHHHHHhcC-----ceeEEEeCCcCCCCCccHHHHHHHHHHHHHh-----------------------hCeEEEE
Confidence 34455566778777 4555 5677544 45666666666666653 3588888
Q ss_pred eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHH
Q 008466 240 RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFR 319 (564)
Q Consensus 240 rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~ 319 (564)
+...++++.++.+++.+++-+++-+=+-|+-+-+-.+-..|++|+.+.+..++++|+++..|+++||-+-..+-..+.++
T Consensus 94 HvGfvdE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaId 173 (275)
T COG1856 94 HVGFVDESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAID 173 (275)
T ss_pred EeeeccHHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEeccCcccchHHHHH
Confidence 88889999999999999999999998776666666666789999999999999999999999999999888776677776
Q ss_pred HHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEE
Q 008466 320 EFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRV 379 (564)
Q Consensus 320 ~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri 379 (564)
-+. ...||.+-+-.++|.|||.+. ..+|++.+|.+..+..+...+|..+.+
T Consensus 174 iL~---~~~~DalVl~vliPtpGtkm~------~~~pp~~eE~i~v~~~AR~~f~~pv~i 224 (275)
T COG1856 174 ILV---NYEPDALVLVVLIPTPGTKMG------NSPPPPVEEAIKVVKYARKKFPNPVSI 224 (275)
T ss_pred HHh---cCCCCeEEEEEEecCCchhcc------CCCCcCHHHHHHHHHHHHHhCCCCeeE
Confidence 665 578999999999999999875 467899999999999999999875554
No 89
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.28 E-value=9.7e-11 Score=135.62 Aligned_cols=208 Identities=12% Similarity=0.088 Sum_probs=150.5
Q ss_pred CCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEEE-cCCCCCC-----
Q 008466 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILM-GGTFMSL----- 194 (564)
Q Consensus 121 fC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~~-GGTpt~l----- 194 (564)
.|..+|.|| .|...+.. . ...+-...+++....+..+.|. -+.+|. |-.|..-
T Consensus 80 ~C~~~C~YC------aF~~~~~~----~-------~~~~ls~eEIl~~a~~~~~~G~----~e~l~t~G~~P~~~~~~~~ 138 (843)
T PRK09234 80 LCRDRCHYC------TFATVPGK----L-------EAAYLSPDEVLDIARAGAAAGC----KEALFTLGDRPEDRWPEAR 138 (843)
T ss_pred CCCCCCCcC------CCccCCCC----C-------ccccCCHHHHHHHHHHHHHCCC----CEEEEecCCCCcccccccc
Confidence 377999999 67421111 0 1233455677777777777774 245564 4455431
Q ss_pred ----------CHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEcc
Q 008466 195 ----------PADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGV 264 (564)
Q Consensus 195 ----------~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGv 264 (564)
..+|+.++++.+++..+ +-..+++..++.+.+..|+++|++ ..+.+
T Consensus 139 ~~l~~~gy~~~~ey~~~~~~~ik~~~g-----------------------l~p~i~~G~ls~~E~~~Lk~~g~s-~gl~l 194 (843)
T PRK09234 139 EWLDERGYDSTLDYVRAMAIRVLEETG-----------------------LLPHLNPGVMSWSELARLKPVAPS-MGMML 194 (843)
T ss_pred ccccccccccHHHHHHHHHHHHHHhcC-----------------------CCceeeeCCCCHHHHHHHHHhcCc-CCCCH
Confidence 13666666666654332 333556677999999999999996 56778
Q ss_pred CCCCHHHHHhcC------CCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcC-CCC-CCCeEEEee
Q 008466 265 QSTYEDVARDTN------RGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFES-PLF-RADGLKIYP 336 (564)
Q Consensus 265 QS~~d~vL~~i~------Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~-~~l-~pd~i~iy~ 336 (564)
+|.+++.....+ .+.+.++-+++++.+++.|+++++.+|+|+ |||+++..+.+..+.++ .++ ++..+-+.+
T Consensus 195 Et~~~~l~~~~g~~h~~~P~K~~~~RL~ti~~A~~lGi~~tsG~L~Gi-GEt~edRve~L~~LR~Lq~~~g~~~evi~~~ 273 (843)
T PRK09234 195 ETTSRRLFEEKGGPHYGSPDKDPAVRLRVLEDAGRLSVPFTTGILIGI-GETLAERAESLFAIRKLHREYGHIQEVIVQN 273 (843)
T ss_pred HHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHcCCCccceEEEEC-CCCHHHHHHHHHHHHHhhHhhCCCcEEeecc
Confidence 887777754433 334577889999999999999999999999 99999999998888643 111 577788999
Q ss_pred eeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEe
Q 008466 337 TLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVY 380 (564)
Q Consensus 337 l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~ 380 (564)
+.+.+||+|.. .++++.++.+..++.+.-.+|+.+.|+
T Consensus 274 F~p~~gT~l~~------~~~~s~~e~Lr~iAvaRliL~~~~~Iq 311 (843)
T PRK09234 274 FRAKPDTAMAG------VPDAGLEELLATIAVARLVLGPKMRIQ 311 (843)
T ss_pred cccCCCCCCCC------CCCCCHHHHHHHHHHHHHhCCCCceee
Confidence 99999999853 467999999999999999998876553
No 90
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.22 E-value=4.8e-10 Score=129.93 Aligned_cols=186 Identities=12% Similarity=0.066 Sum_probs=135.8
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-
Q 008466 160 NPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE- 238 (564)
Q Consensus 160 ~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE- 238 (564)
-+..+++.+..+..+.|. -+..+.||.-..++.++..++++.|++.++. +.|-..
T Consensus 557 Ls~eeI~~~a~ea~~~G~----tev~i~gG~~p~~~~~~y~~lir~IK~~~p~--------------------i~i~afs 612 (843)
T PRK09234 557 LSLDEVADRAWEAWVAGA----TEVCMQGGIHPELPGTGYADLVRAVKARVPS--------------------MHVHAFS 612 (843)
T ss_pred CCHHHHHHHHHHHHHCCC----CEEEEecCCCCCcCHHHHHHHHHHHHHhCCC--------------------eeEEecC
Confidence 355666666666777773 1223446654468888888999999987752 111111
Q ss_pred --------eeCCCCCHHHHHHHHHcCCCeEEE-ccCCCCHHHHHhcCC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCCC
Q 008466 239 --------TRPDYCLGPHLRQMLSYGCTRLEI-GVQSTYEDVARDTNR-GHTVAAVADCFCLAKDAGFKVVAHMMPDLPN 308 (564)
Q Consensus 239 --------trPd~i~~e~L~~L~~~G~~rvsi-GvQS~~d~vL~~i~R-ght~~~~~~ai~~lr~~G~~v~~~lI~GLPg 308 (564)
..-...++|.|..|+++|++++-- +-+-+++++.+.+.. ..+.++.+++++.+++.|+++++.+|+|+ +
T Consensus 613 p~Ei~~~a~~~Gl~~~e~l~~LkeAGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~lGi~~~stmm~G~-~ 691 (843)
T PRK09234 613 PMEIVNGAARLGLSIREWLTALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGLRSSSTMMYGH-V 691 (843)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcccceEEcC-C
Confidence 112334689999999999999966 556677777777775 46888999999999999999999999998 7
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCeEEEeeeee----cCCChhHHHHHcC-CCCCCCHHHHHHHHHHHHHhCCCc
Q 008466 309 VGVERDLESFREFFESPLFRADGLKIYPTLV----IRGTGLYELWKTG-RYRNYPPEQLVDIVARILAMVPPW 376 (564)
Q Consensus 309 et~e~~~~t~~~~~~~~~l~pd~i~iy~l~v----~~GT~L~~~~~~G-~~~~~~~ee~~~~~~~~~~~lp~~ 376 (564)
||++++.+.+..+. +++.+..-|.++.| .++||++. .| ..+.++.++.+.+++.+.-+||+.
T Consensus 692 Et~edrv~hl~~Lr---eLq~~tgGf~~fIPl~F~~~~tpl~l---~~~~~~~~t~~e~Lr~iAvaRl~Lp~~ 758 (843)
T PRK09234 692 DTPRHWVAHLRVLR---DIQDRTGGFTEFVPLPFVHQNAPLYL---AGAARPGPTHRENRAVHALARIMLHGR 758 (843)
T ss_pred CCHHHHHHHHHHHH---hcCcccCCeeeeeeccccCCCCCccc---ccCCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999998887 46665544445554 56888852 22 245689999999999998888864
No 91
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.21 E-value=9.5e-10 Score=115.54 Aligned_cols=153 Identities=12% Similarity=0.067 Sum_probs=108.8
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeE
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rv 260 (564)
++.| |.||.|+..+ .+.++++.+.+.. ....+++.|+...+ .+.++.|+++|+++|
T Consensus 66 i~~I~~tGGEPll~~--~l~~li~~i~~~~--------------------~~~~i~itTNG~ll-~~~~~~L~~agl~~i 122 (331)
T PRK00164 66 VRKVRLTGGEPLLRK--DLEDIIAALAALP--------------------GIRDLALTTNGYLL-ARRAAALKDAGLDRV 122 (331)
T ss_pred CCEEEEECCCCcCcc--CHHHHHHHHHhcC--------------------CCceEEEEcCchhH-HHHHHHHHHcCCCEE
Confidence 4455 7899998763 3566777665421 12468888887543 568999999999999
Q ss_pred EEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCC-cEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeee
Q 008466 261 EIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGF-KVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLV 339 (564)
Q Consensus 261 siGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~-~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v 339 (564)
.|+++|++++..+.++++.+.+++.++++.++++|+ .+.+.+. -+||.+.+++.+.++.+. .+++ .+.+..+++
T Consensus 123 ~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~v-v~~g~n~~ei~~l~~~~~---~~gv-~v~~ie~~p 197 (331)
T PRK00164 123 NVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAV-LMKGVNDDEIPDLLEWAK---DRGI-QLRFIELMP 197 (331)
T ss_pred EEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEE-EECCCCHHHHHHHHHHHH---hCCC-eEEEEEeeE
Confidence 999999999999999999999999999999999999 6665543 367777777777776665 3444 466777777
Q ss_pred cCCChhHHHHHcCCCCCCCHHHHHHHHH
Q 008466 340 IRGTGLYELWKTGRYRNYPPEQLVDIVA 367 (564)
Q Consensus 340 ~~GT~L~~~~~~G~~~~~~~ee~~~~~~ 367 (564)
..+..- |.... ..+.++..+.+.
T Consensus 198 ~~~~~~---~~~~~--~~~~~~~~~~l~ 220 (331)
T PRK00164 198 TGEGNE---WFRKH--HLSGAEIRARLA 220 (331)
T ss_pred CCCCcc---hhhhc--CCCHHHHHHHHH
Confidence 665421 21111 245666655544
No 92
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.19 E-value=1.4e-09 Score=114.52 Aligned_cols=154 Identities=14% Similarity=0.142 Sum_probs=109.5
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeE
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rv 260 (564)
++.| +.||.|+..+ .+.++++.+.+.. ....+++.|+.- +..+.++.|+++|+++|
T Consensus 60 v~~V~ltGGEPll~~--~l~~li~~i~~~~--------------------gi~~v~itTNG~-ll~~~~~~L~~~gl~~v 116 (334)
T TIGR02666 60 VRKVRLTGGEPLLRK--DLVELVARLAALP--------------------GIEDIALTTNGL-LLARHAKDLKEAGLKRV 116 (334)
T ss_pred CCEEEEECccccccC--CHHHHHHHHHhcC--------------------CCCeEEEEeCch-hHHHHHHHHHHcCCCeE
Confidence 4445 7899998764 3556666654311 112688888875 44678999999999999
Q ss_pred EEccCCCCHHHHHhcCC-CCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeee
Q 008466 261 EIGVQSTYEDVARDTNR-GHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTL 338 (564)
Q Consensus 261 siGvQS~~d~vL~~i~R-ght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~ 338 (564)
.|+++|.+++..+.+.| +++.+++.++++.++++|+. +.+.++ -++|.+.+++.+.++.+. ++++ .+.+..++
T Consensus 117 ~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~v-v~~g~n~~ei~~l~~~~~---~~gv-~~~~ie~m 191 (334)
T TIGR02666 117 NVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTV-VMRGVNDDEIVDLAEFAK---ERGV-TLRFIELM 191 (334)
T ss_pred EEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEE-EeCCCCHHHHHHHHHHHH---hcCC-eEEEEecc
Confidence 99999999999999985 67999999999999999997 666543 346778887777777765 3444 36666777
Q ss_pred ecCCChhHHHHHcCCCCCCCHHHHHHHHHH
Q 008466 339 VIRGTGLYELWKTGRYRNYPPEQLVDIVAR 368 (564)
Q Consensus 339 v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~ 368 (564)
+..++.. |.... ..+.++..+.+..
T Consensus 192 p~~~~~~---~~~~~--~~~~~ei~~~l~~ 216 (334)
T TIGR02666 192 PLGEGNG---WREKK--FVSADEILERLEQ 216 (334)
T ss_pred CCCCCcc---chhhc--ccCHHHHHHHHHh
Confidence 7766632 21211 2456666665544
No 93
>PTZ00413 lipoate synthase; Provisional
Probab=99.16 E-value=2.4e-09 Score=112.12 Aligned_cols=100 Identities=9% Similarity=0.065 Sum_probs=89.4
Q ss_pred EEEEEee-CCCC-CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCC-CCCHHHHHHHHHHHHHc---CCcEEEEEecCCC
Q 008466 234 GMTIETR-PDYC-LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNR-GHTVAAVADCFCLAKDA---GFKVVAHMMPDLP 307 (564)
Q Consensus 234 eitiEtr-Pd~i-~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~R-ght~~~~~~ai~~lr~~---G~~v~~~lI~GLP 307 (564)
++.+|+- ||.. +.+.++.|+++|++++..++|| .++.+..++. +|+.++.++.++.+++. |+.+.+++|+||
T Consensus 228 ~~~IevligDf~g~~e~l~~L~eAG~dvynHNLET-v~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGL- 305 (398)
T PTZ00413 228 ELLLEALVGDFHGDLKSVEKLANSPLSVYAHNIEC-VERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGL- 305 (398)
T ss_pred CCeEEEcCCccccCHHHHHHHHhcCCCEEeccccc-CHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecC-
Confidence 5788875 6632 8999999999999999999999 7999999995 79999999999999987 899999999995
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCeEEEeeee
Q 008466 308 NVGVERDLESFREFFESPLFRADGLKIYPTL 338 (564)
Q Consensus 308 get~e~~~~t~~~~~~~~~l~pd~i~iy~l~ 338 (564)
|||.+++++++..+. ++++|.+.|-+++
T Consensus 306 GET~eEvie~m~dLr---elGVDivtIGQYL 333 (398)
T PTZ00413 306 GETEEEVRQTLRDLR---TAGVSAVTLGQYL 333 (398)
T ss_pred CCCHHHHHHHHHHHH---HcCCcEEeecccc
Confidence 999999999999997 6889999996654
No 94
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.15 E-value=2.9e-09 Score=113.68 Aligned_cols=168 Identities=13% Similarity=0.060 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe
Q 008466 161 PYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET 239 (564)
Q Consensus 161 ~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt 239 (564)
++.++......+...| ++.| |.||.|+..+ .+.++++.+.+. . ....+++.|
T Consensus 91 s~eei~~~i~~~~~~G-----v~~I~~tGGEPllr~--dl~eli~~l~~~-~-------------------gi~~i~itT 143 (373)
T PLN02951 91 SQDEIVRLAGLFVAAG-----VDKIRLTGGEPTLRK--DIEDICLQLSSL-K-------------------GLKTLAMTT 143 (373)
T ss_pred CHHHHHHHHHHHHHCC-----CCEEEEECCCCcchh--hHHHHHHHHHhc-C-------------------CCceEEEee
Confidence 3444444334455555 4445 7899997654 256677666542 1 112477777
Q ss_pred eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHH
Q 008466 240 RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESF 318 (564)
Q Consensus 240 rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~ 318 (564)
+--.+ .+.+..|+++|+++|.|.++|.+++..+.+.|+...++++++++.++++|+. +.+.+ +-++|.+.+++.+.+
T Consensus 144 NG~lL-~~~~~~L~~aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~-vv~~g~N~~Ei~~li 221 (373)
T PLN02951 144 NGITL-SRKLPRLKEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNC-VVMRGFNDDEICDFV 221 (373)
T ss_pred CcchH-HHHHHHHHhCCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEE-EecCCCCHHHHHHHH
Confidence 77544 4678999999999999999999999999999988899999999999999985 44433 345577777777777
Q ss_pred HHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHH
Q 008466 319 REFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVA 367 (564)
Q Consensus 319 ~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~ 367 (564)
+.+.+ .+ -.+.+..++|..|++.. ... .++.++..+.+.
T Consensus 222 ~~a~~---~g-i~vr~ie~mP~~~~~~~----~~~--~~~~~ei~~~l~ 260 (373)
T PLN02951 222 ELTRD---KP-INVRFIEFMPFDGNVWN----VKK--LVPYAEMMDRIE 260 (373)
T ss_pred HHHHh---CC-CeEEEEEcccCCCCccc----ccc--CCCHHHHHHHHH
Confidence 66653 33 46788888888888532 222 245666665554
No 95
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.09 E-value=5.3e-09 Score=108.46 Aligned_cols=131 Identities=16% Similarity=0.130 Sum_probs=98.7
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeE
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rv 260 (564)
++.| |.||.|+..+. +.++++.+.+. . ...+++.|+.- +..+.+..|+++|+++|
T Consensus 57 i~~I~~tGGEPll~~~--l~~iv~~l~~~-g--------------------~~~v~i~TNG~-ll~~~~~~l~~~g~~~v 112 (302)
T TIGR02668 57 VRKVKITGGEPLLRKD--LIEIIRRIKDY-G--------------------IKDVSMTTNGI-LLEKLAKKLKEAGLDRV 112 (302)
T ss_pred CCEEEEECcccccccC--HHHHHHHHHhC-C--------------------CceEEEEcCch-HHHHHHHHHHHCCCCEE
Confidence 4445 78999987543 44566665532 1 12578888875 44688999999999999
Q ss_pred EEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeee
Q 008466 261 EIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLV 339 (564)
Q Consensus 261 siGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v 339 (564)
.|++.|.++++.+.++++.+.+++.++++.++++|+. +.+.+++ +||.+.+++.+.++.+.+ ++.+ +.+..+++
T Consensus 113 ~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~-~~g~n~~ei~~~~~~~~~---~g~~-~~~ie~~p 187 (302)
T TIGR02668 113 NVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVV-LKGINDNEIPDMVEFAAE---GGAI-LQLIELMP 187 (302)
T ss_pred EEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEE-eCCCCHHHHHHHHHHHHh---cCCE-EEEEEEeE
Confidence 9999999999999999999999999999999999986 6555433 688898888887777753 4443 56555555
Q ss_pred cC
Q 008466 340 IR 341 (564)
Q Consensus 340 ~~ 341 (564)
..
T Consensus 188 ~~ 189 (302)
T TIGR02668 188 PG 189 (302)
T ss_pred CC
Confidence 43
No 96
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.08 E-value=5.6e-09 Score=111.71 Aligned_cols=129 Identities=11% Similarity=0.089 Sum_probs=101.9
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeE
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rv 260 (564)
+..| |.||.|+..+. +.++++.+++. .+.+++.|+...++++.++.|+++|++.|
T Consensus 63 ~~~v~~~GGEPll~~~--~~~il~~~~~~----------------------g~~~~i~TNG~ll~~~~~~~L~~~g~~~v 118 (378)
T PRK05301 63 ALQLHFSGGEPLLRKD--LEELVAHAREL----------------------GLYTNLITSGVGLTEARLAALKDAGLDHI 118 (378)
T ss_pred CcEEEEECCccCCchh--HHHHHHHHHHc----------------------CCcEEEECCCccCCHHHHHHHHHcCCCEE
Confidence 3444 78999987543 55666666531 13467889998899999999999999999
Q ss_pred EEccCCCCHHHHHhcCCC-CCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeee
Q 008466 261 EIGVQSTYEDVARDTNRG-HTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLV 339 (564)
Q Consensus 261 siGvQS~~d~vL~~i~Rg-ht~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v 339 (564)
+|++++.++++.+.+.++ .+.+.++++++.+++.|+++.+.+. ++.++.+++.+.++.+. +++++.+.+.++.+
T Consensus 119 ~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~v--v~~~N~~~i~~~~~~~~---~lgv~~i~~~~~~~ 193 (378)
T PRK05301 119 QLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAV--IHRHNIDQIPRIIELAV---ELGADRLELANTQY 193 (378)
T ss_pred EEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEE--eecCCHHHHHHHHHHHH---HcCCCEEEEecccc
Confidence 999999999999988665 4899999999999999999776544 46788888888887775 57889988776543
No 97
>PRK10314 putative acyltransferase; Provisional
Probab=99.07 E-value=2.6e-10 Score=106.72 Aligned_cols=87 Identities=16% Similarity=0.222 Sum_probs=67.0
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
+.|++.+++ +.+||++|+....+... . -++. -+.|+++ |||+|+|++||+++++++++.
T Consensus 48 ~~h~~~~~~---~~~vg~~r~~~~~~~~~-------~---~~i~----rv~V~~~----~rG~GiG~~Lm~~~~~~~~~~ 106 (153)
T PRK10314 48 NRHILGWKN---DELVAYARILKSDDDLE-------P---VVIG----RVIVSEA----LRGEKVGQQLMSKTLESCTRH 106 (153)
T ss_pred cEEEEEEEC---CEEEEEEEEecCCCCCC-------C---EEEE----EEEECHH----HhCCCHHHHHHHHHHHHHHHH
Confidence 678888876 78999999985321100 0 1122 1337776 999999999999999999874
Q ss_pred CCCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 530 HRSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 530 ~g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
.+...|.+.++..|.+||+|+||+..|.
T Consensus 107 ~~~~~i~L~a~~~a~~fY~k~GF~~~g~ 134 (153)
T PRK10314 107 WPDKPVYLGAQAHLQNFYQSFGFIPVTE 134 (153)
T ss_pred CCCCcEEEehHHHHHHHHHHCCCEECCC
Confidence 4778899999988999999999999884
No 98
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=99.05 E-value=4.4e-09 Score=109.10 Aligned_cols=119 Identities=13% Similarity=0.121 Sum_probs=104.9
Q ss_pred ccEEEEEEe-eCCCCCHHHHHHHHHcC--CCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecC
Q 008466 231 KCIGMTIET-RPDYCLGPHLRQMLSYG--CTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPD 305 (564)
Q Consensus 231 ~~~eitiEt-rPd~i~~e~L~~L~~~G--~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~G 305 (564)
+.+.|.+.. +|.+..+|.|+++++.- |.-+.+-+||.|.++|+.|.||++.+.+.+-+..++.. |....+|||.|
T Consensus 324 PemR~RFTSPHPKDfpdevl~li~~rdnickqihlPAqSgds~vLE~mrRgysreayl~lv~~Irs~iPgVglssdfitg 403 (552)
T KOG2492|consen 324 PEMRIRFTSPHPKDFPDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMRRGYSREAYLELVAHIRSMIPGVGLSSDFITG 403 (552)
T ss_pred cceEEEecCCCCCCChHHHHHHHHhCcchhheeeccccCCchHHHHHHHccCChHhhhhHHHHHHhhCCCCcceeeeEec
Confidence 456777775 99999999999999976 79999999999999999999999999999999999996 55567899999
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcC
Q 008466 306 LPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTG 352 (564)
Q Consensus 306 LPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G 352 (564)
+-|+|.++..+|+..+. +.+-|.+..++.....+|..|..+...
T Consensus 404 fCgeTeedhq~t~sLlr---qVgYdv~~lFaysmR~kT~ay~r~~dd 447 (552)
T KOG2492|consen 404 FCGETEEDHQYTVSLLR---QVGYDVVFLFAYSMREKTRAYHRLKDD 447 (552)
T ss_pred ccCCChHHHHHHHHHHH---HhccCeeeeEEeeecccchhhhhhccc
Confidence 99999999999987765 567788899999999999999877654
No 99
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.01 E-value=1.1e-09 Score=99.97 Aligned_cols=94 Identities=19% Similarity=0.176 Sum_probs=69.1
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeee-eecccccccCCCchhhhhcCHHHHHHHHHHHHHHh
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELH-VYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG 528 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relh-vyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~ 528 (564)
..+|+..++ +.+||++.+....+. +.. . -.-++| +| |+++ |||+|||+.||++++++|++
T Consensus 47 ~~~~v~~~~---~~ivG~~~~~~~~~~-~~~-----~-~~~~i~~l~-----v~p~----~rg~GiG~~Ll~~~~~~a~~ 107 (144)
T PRK10146 47 MRYHLALLD---GEVVGMIGLHLQFHL-HHV-----N-WIGEIQELV-----VMPQ----ARGLNVGSKLLAWAEEEARQ 107 (144)
T ss_pred ceEEEEEEC---CEEEEEEEEEecccc-ccc-----c-hhheeheeE-----ECHH----HcCCCHHHHHHHHHHHHHHH
Confidence 355666554 789999999864211 000 0 001232 44 6766 99999999999999999999
Q ss_pred cCCCcEEEEec---CCCcHHHHhhCCCeeeCceEeeec
Q 008466 529 EHRSRKMAVIS---GVGTRHYYRKLGYELEGPYMVKYL 563 (564)
Q Consensus 529 ~~g~~~i~~~s---~~~a~~fY~klGy~~~g~~m~K~l 563 (564)
.|+..+.+.+ +..|.+||+|+||+..+.-|.|.|
T Consensus 108 -~~~~~i~l~~~~~n~~a~~fY~~~Gf~~~~~~~~~~~ 144 (144)
T PRK10146 108 -AGAEMTELSTNVKRHDAHRFYLREGYEQSHFRFTKAL 144 (144)
T ss_pred -cCCcEEEEecCCCchHHHHHHHHcCCchhhhhheeCC
Confidence 5999998764 558999999999999988777764
No 100
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.00 E-value=5.3e-09 Score=107.72 Aligned_cols=110 Identities=17% Similarity=0.147 Sum_probs=90.8
Q ss_pred EEEE-eeCCCCCHHHHHHHHH---cC--CCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEEEEecCC
Q 008466 235 MTIE-TRPDYCLGPHLRQMLS---YG--CTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVAHMMPDL 306 (564)
Q Consensus 235 itiE-trPd~i~~e~L~~L~~---~G--~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~~lI~GL 306 (564)
+.+. |+|-++ -|+++.++. .- ..-+.+-|||++|.+|-.|+|-+...++...+..+++. |+.+..|+|.|+
T Consensus 271 lr~gmTnpP~i-lehl~e~a~vlrhp~vYsflhvpvqsgsdsvl~emkreyc~~dfk~Vvd~LterVPgi~IATDiIcgF 349 (547)
T KOG4355|consen 271 LRAGMTNPPYI-LEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTERVPGITIATDIICGF 349 (547)
T ss_pred hhhcCCCCchH-HHHHHHHHHHhcCCeEEEEEecccccCchhHHHHHHHHHhhhhHHHHHHHHHhhCCCcEEeeeeeecC
Confidence 4444 566644 334444433 22 26778899999999999999999999999999999985 788889999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHH
Q 008466 307 PNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYEL 348 (564)
Q Consensus 307 Pget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~ 348 (564)
|+||.+++.++++.+. .++.+.+.|..+.|.||||-+++
T Consensus 350 PtETdeDFeeTmeLv~---kYKFPslfInQfyPRpGTPAAkm 388 (547)
T KOG4355|consen 350 PTETDEDFEETMELVR---KYKFPSLFINQFYPRPGTPAAKM 388 (547)
T ss_pred CCCchHHHHHHHHHHH---HccCchhhhhhcCCCCCChHHhh
Confidence 9999999999998775 67889999999999999998876
No 101
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=98.99 E-value=2.3e-08 Score=106.12 Aligned_cols=128 Identities=14% Similarity=0.121 Sum_probs=99.5
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeE
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rv 260 (564)
+..| |.||.|+..+ + +.++++.+++. ...+++.|+--.++++.++.|+++|+++|
T Consensus 54 ~~~v~~~GGEPll~~-~-~~~ii~~~~~~----------------------g~~~~l~TNG~ll~~e~~~~L~~~g~~~v 109 (358)
T TIGR02109 54 VLQLHFSGGEPLARP-D-LVELVAHARRL----------------------GLYTNLITSGVGLTEARLDALADAGLDHV 109 (358)
T ss_pred CcEEEEeCccccccc-c-HHHHHHHHHHc----------------------CCeEEEEeCCccCCHHHHHHHHhCCCCEE
Confidence 3445 7899998654 3 45666665431 13467888888899999999999999999
Q ss_pred EEccCCCCHHHHHhcCCC-CCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeee
Q 008466 261 EIGVQSTYEDVARDTNRG-HTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTL 338 (564)
Q Consensus 261 siGvQS~~d~vL~~i~Rg-ht~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~ 338 (564)
.|++++.++++.+.+.+. .+.+.+.++++.++++|+++.+.+. ++.++.+++.+.++.+. +++++.+.+.++.
T Consensus 110 ~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~v--v~~~N~~~l~~~~~~~~---~lg~~~i~~~~~~ 183 (358)
T TIGR02109 110 QLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFV--IHRHNIDQIPEIIELAI---ELGADRVELATTQ 183 (358)
T ss_pred EEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEE--eccCCHHHHHHHHHHHH---HcCCCEEEEEeee
Confidence 999999999999988653 3679999999999999998765443 46778888877777775 5788988886644
No 102
>PTZ00330 acetyltransferase; Provisional
Probab=98.99 E-value=3e-09 Score=97.27 Aligned_cols=88 Identities=23% Similarity=0.207 Sum_probs=68.1
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEecC
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISG 540 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~ 540 (564)
++.+||++.+...... .+. +....+++ .+.|+++ |||+|||++||+.++++|++ .|+.++.+.++
T Consensus 60 ~~~~vG~~~~~~~~~~-~~~-----~~~~~~i~----~~~V~~~----~rg~Gig~~l~~~~~~~a~~-~~~~~l~l~~n 124 (147)
T PTZ00330 60 TQRIVGTASLFVEPKF-TRG-----GKCVGHIE----DVVVDPS----YRGQGLGRALISDLCEIARS-SGCYKVILDCT 124 (147)
T ss_pred CCEEEEEEEEEecccc-ccC-----CCceEEEE----EEEECHH----HcCCCHHHHHHHHHHHHHHH-CCCCEEEEecC
Confidence 4789999998744211 111 11122333 1237776 99999999999999999999 59999999999
Q ss_pred CCcHHHHhhCCCeeeCceEeeec
Q 008466 541 VGTRHYYRKLGYELEGPYMVKYL 563 (564)
Q Consensus 541 ~~a~~fY~klGy~~~g~~m~K~l 563 (564)
..|++||+|+||+.....|.+.|
T Consensus 125 ~~a~~~y~k~GF~~~~~~~~~~~ 147 (147)
T PTZ00330 125 EDMVAFYKKLGFRACERQMRLDL 147 (147)
T ss_pred hHHHHHHHHCCCEEeceEEEEeC
Confidence 99999999999999999999876
No 103
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=98.98 E-value=6.6e-08 Score=96.48 Aligned_cols=151 Identities=9% Similarity=0.052 Sum_probs=98.6
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCC-CHHHHHHHHHcCCCeEEEcc
Q 008466 186 LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYC-LGPHLRQMLSYGCTRLEIGV 264 (564)
Q Consensus 186 ~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i-~~e~L~~L~~~G~~rvsiGv 264 (564)
|.||.|+. .++.+..+++.+++. . +.+++.|+-... ..+.+..+.+ .++.|.+++
T Consensus 71 ~~GGEPll-~~~~~~~li~~~~~~-g---------------------~~~~i~TNG~~~~~~~~~~~ll~-~~d~v~isl 126 (235)
T TIGR02493 71 FSGGEPLL-QPEFLSELFKACKEL-G---------------------IHTCLDTSGFLGGCTEAADELLE-YTDLVLLDI 126 (235)
T ss_pred EeCccccc-CHHHHHHHHHHHHHC-C---------------------CCEEEEcCCCCCccHHHHHHHHH-hCCEEEEeC
Confidence 78999975 456666777766541 1 246777877322 1456666665 467899999
Q ss_pred CCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCC--CCHHHHHHHHHHHhcCCCCC-CCeEEEeeeeecC
Q 008466 265 QSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPN--VGVERDLESFREFFESPLFR-ADGLKIYPTLVIR 341 (564)
Q Consensus 265 QS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPg--et~e~~~~t~~~~~~~~~l~-pd~i~iy~l~v~~ 341 (564)
+|.+++..+.+.+. +.+.+.++++.+++.|+.+.+-+++ .|+ ++.+++.+.++.+. .++ +..+.+-|+.+.
T Consensus 127 ~~~~~~~~~~~~g~-~~~~v~~~i~~l~~~g~~~~v~~vv-~~~~~~n~~ei~~l~~~~~---~l~~~~~~~~~p~~~~- 200 (235)
T TIGR02493 127 KHFNPEKYKKLTGV-SLQPTLDFAKYLAKRNKPIWIRYVL-VPGYTDSEEDIEALAEFVK---TLPNVERVEVLPYHQL- 200 (235)
T ss_pred CCCCHHHHHHHHCC-CcHHHHHHHHHHHhCCCcEEEEEee-eCCcCCCHHHHHHHHHHHH---hCCCCceEEecCCCcc-
Confidence 99999999887654 8899999999999999987654443 354 46677777776665 344 355655555543
Q ss_pred CChhHHHHHcC----CCCCCCHHHHHHHH
Q 008466 342 GTGLYELWKTG----RYRNYPPEQLVDIV 366 (564)
Q Consensus 342 GT~L~~~~~~G----~~~~~~~ee~~~~~ 366 (564)
|+..++..... .+++++.++..+..
T Consensus 201 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (235)
T TIGR02493 201 GVYKWEALGIEYPLEGVKPPNKEQLERAA 229 (235)
T ss_pred cHHHHHHcCCcCccCCCCCCCHHHHHHHH
Confidence 55544432222 24556666554443
No 104
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=98.97 E-value=4.8e-08 Score=102.74 Aligned_cols=162 Identities=10% Similarity=0.147 Sum_probs=120.1
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe-----eCCCCCHHHHHHHHHcCC
Q 008466 183 EFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET-----RPDYCLGPHLRQMLSYGC 257 (564)
Q Consensus 183 e~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt-----rPd~i~~e~L~~L~~~G~ 257 (564)
+.+|.||.|..++.+.+.++++.+.+. . ....+.+.+ .|..++++.++.|+++|+
T Consensus 162 eV~lsGGDPLl~~d~~L~~ll~~L~~i-~-------------------~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~ 221 (331)
T TIGR00238 162 EILISGGDPLMAKDHELEWLLKRLEEI-P-------------------HLVRLRIGTRLPVVIPQRITDELCELLASFEL 221 (331)
T ss_pred EEEEECCccccCCHHHHHHHHHHHHhc-C-------------------CccEEEeecCCCccCchhcCHHHHHHHHhcCC
Confidence 455889999999988888888887642 1 223455554 467789999999999999
Q ss_pred CeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEE--EEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEe
Q 008466 258 TRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA--HMMPDLPNVGVERDLESFREFFESPLFRADGLKIY 335 (564)
Q Consensus 258 ~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~--~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy 335 (564)
..+.++.-...+++ .+++.+|++.++++|+.+.+ -++-|. +++.+.+.+.++.+. .+++....+|
T Consensus 222 ~~~~vsh~nh~~Ei---------~~~~~~ai~~L~~aGi~v~~qtvLl~gv-nD~~~~l~~L~~~l~---~~gV~pyyl~ 288 (331)
T TIGR00238 222 QLMLVTHINHCNEI---------TEEFAEAMKKLRTVNVTLLNQSVLLRGV-NDRAQILAKLSIALF---KVGIIPYYLH 288 (331)
T ss_pred cEEEEccCCChHhC---------CHHHHHHHHHHHHcCCEEEeecceECCc-CCCHHHHHHHHHHHh---hcCeecCeec
Confidence 88877755544332 27889999999999998664 677777 777777777777776 4566667777
Q ss_pred eeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCC
Q 008466 336 PTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIP 387 (564)
Q Consensus 336 ~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip 387 (564)
.+.+..|+. .| ..+.++..+++..+...+|- .-+.++.+|+|
T Consensus 289 ~~~~~~g~~--------~f-~~~~~~~~~i~~~l~~~~sG-~~~P~~v~~~~ 330 (331)
T TIGR00238 289 YLDKVQGAK--------HF-LVPDAEAAQIVKELARLTSG-YLVPKFAVEIM 330 (331)
T ss_pred CcCCCCCcc--------cc-cCCHHHHHHHHHHHHhcCCC-CcceeEEecCC
Confidence 888888872 23 37899999999999999865 44556666666
No 105
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=98.95 E-value=6.5e-08 Score=105.44 Aligned_cols=179 Identities=15% Similarity=0.173 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe
Q 008466 162 YVQARSRIDQLKRLGHSVDKVEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET 239 (564)
Q Consensus 162 y~~~l~r~~~l~~~g~~~~kve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt 239 (564)
..+++....++..... .+..| |.| |.|+.-+... .+++..+++.++ .+.++++|
T Consensus 62 pee~~~~i~~v~~~~~---~~~~V~iaG~GEPLl~~e~~-~~~l~~~~~~~~--------------------~i~i~lsT 117 (442)
T TIGR01290 62 PEQALRKARQVAAEIP---QLSVVGIAGPGDPLANIGKT-FQTLELVARQLP--------------------DVKLCLST 117 (442)
T ss_pred HHHHHHHHHHHHHhcC---CCCEEEEecCCCcccCcccc-HHHHHHHHHhcC--------------------CCeEEEEC
Confidence 3455555444443211 13334 677 9998765433 334555655432 24689999
Q ss_pred eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhc-------CC---CCC-----HHHHHHHHHHHHHcCCcEE--EEE
Q 008466 240 RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDT-------NR---GHT-----VAAVADCFCLAKDAGFKVV--AHM 302 (564)
Q Consensus 240 rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i-------~R---ght-----~~~~~~ai~~lr~~G~~v~--~~l 302 (564)
+-- +.++.++.|.++|++.|.+.+-++++++.+.+ +| |.. .+.++++++.+.+.|+.+. +-+
T Consensus 118 NG~-~l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vl 196 (442)
T TIGR01290 118 NGL-MLPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVL 196 (442)
T ss_pred CCC-CCHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEe
Confidence 884 55899999999999999999999999999876 22 222 3456799999999998754 345
Q ss_pred ecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecC--CChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 303 MPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIR--GTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 303 I~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~--GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
|+|+ +.+++.+.++.+. .++++.+.+.|+.+.| |+++. -...++++.+++.++...+...+|.
T Consensus 197 IpGi---ND~~i~~l~~~~~---~lg~~~~nl~p~~~~p~~G~~~~----~~~~~~ps~e~l~~~~~~~~~~~~~ 261 (442)
T TIGR01290 197 IPGI---NDEHLVEVSKQVK---ELGAFLHNVMPLISAPEHGTVYG----LNGQREPDPDELAALRDRLEMGTPQ 261 (442)
T ss_pred eCCc---CHHHHHHHHHHHH---hCCCcEEEeecCCCccccCCccC----cCCCCCcCHHHHHHHHHHHHhhhhh
Confidence 6555 5566666666554 4667778888888877 87642 2235678888877766655555553
No 106
>PHA00673 acetyltransferase domain containing protein
Probab=98.95 E-value=2.7e-09 Score=99.42 Aligned_cols=95 Identities=15% Similarity=0.075 Sum_probs=71.3
Q ss_pred eeCCCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHH
Q 008466 445 VANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAER 524 (564)
Q Consensus 445 ~a~gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~ 524 (564)
.+.++..+|+++.+ +.+|||+.+.+.... ++... ..+.+..++ |++. +||+|||++||++|++
T Consensus 50 ~~dp~~~llVa~~~---g~vVG~~~l~~~p~l-~~~~~--~~~~Ie~l~-------V~~~----~RGqGIG~~Ll~~A~~ 112 (154)
T PHA00673 50 EAAGVAHFLGVFRG---EELVGFACLLVTPVP-HFKGQ--LIGTTESIF-------VAAA----HRPGGAGMALLRATEA 112 (154)
T ss_pred HhCCCcEEEEEEEC---CEEEEEEEEEEecCC-ccCCc--cEEEEEEEE-------EChh----ccCCCHHHHHHHHHHH
Confidence 34567888888875 789999999877522 22111 122333332 5666 9999999999999999
Q ss_pred HHHhcCCCcEEEEec--CCCcHHHHhhCCCeeeCc
Q 008466 525 IALGEHRSRKMAVIS--GVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 525 ~A~~~~g~~~i~~~s--~~~a~~fY~klGy~~~g~ 557 (564)
+|++ +|+..|.|++ ..+...||.++||..+..
T Consensus 113 ~Ar~-~Gc~~lyis~~p~~~tv~fy~~~g~~~~~~ 146 (154)
T PHA00673 113 LARD-LGATGLYVSGPTEGRLVQLLPAAGYRETNR 146 (154)
T ss_pred HHHH-CCCCEEEEecCCCccchHHHHhCCchhhch
Confidence 9999 5999999986 557899999999987653
No 107
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=98.93 E-value=1.2e-07 Score=101.65 Aligned_cols=162 Identities=16% Similarity=0.223 Sum_probs=123.8
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEee-----CCCCCHHHHHHHHHcCC
Q 008466 183 EFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETR-----PDYCLGPHLRQMLSYGC 257 (564)
Q Consensus 183 e~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtr-----Pd~i~~e~L~~L~~~G~ 257 (564)
+.++.||.|..++.+.++++++.|.+ ++ .+.-+.+.|| |..+|++.++.|++++.
T Consensus 158 ~VlLSGGDPLll~d~~L~~iL~~L~~-Ip-------------------hV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~ 217 (417)
T TIGR03820 158 DVLLSGGDPLLLSDDYLDWILTELRA-IP-------------------HVEVIRIGTRVPVVLPQRITDELVAILKKHHP 217 (417)
T ss_pred EEEEeCCccccCChHHHHHHHHHHhh-cC-------------------CCceEEEeeccccccccccCHHHHHHHHhcCC
Confidence 45578999999999999988888875 22 2335888999 99999999999999987
Q ss_pred CeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEe
Q 008466 258 TRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRADGLKIY 335 (564)
Q Consensus 258 ~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy 335 (564)
.+|.+-+.+. +. ..+++.+|+++++++|+.+. +-++-|. +++.+.+.+.++.+++ .++.=--+|
T Consensus 218 ~~v~~h~nhp--~E--------it~~a~~Al~~L~~aGI~l~nQsVLLkGV-ND~~~~l~~L~~~L~~---~gV~PYYl~ 283 (417)
T TIGR03820 218 VWLNTHFNHP--RE--------ITASSKKALAKLADAGIPLGNQSVLLAGV-NDCPRIMKKLVHKLVA---NRVRPYYLY 283 (417)
T ss_pred eEEEEeCCCh--Hh--------ChHHHHHHHHHHHHcCCEEEeeceEECCc-CCCHHHHHHHHHHHHH---CCCeeceee
Confidence 6665555443 22 25899999999999999865 4788996 8888888888888874 344333567
Q ss_pred eeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCCh
Q 008466 336 PTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPM 388 (564)
Q Consensus 336 ~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~ 388 (564)
.+-+.+|+.-++ .+.++.++++..+...++-.. +.+...|+|.
T Consensus 284 ~~d~v~G~~hFr---------v~~~~g~~I~~~lr~~~sG~~-vP~~v~d~pg 326 (417)
T TIGR03820 284 QCDLSEGLSHFR---------TPVGKGIEIIESLIGHTSGFA-VPTYVVDAPG 326 (417)
T ss_pred eccCCCCccccc---------CcHHHHHHHHHHHHHhCCCCC-ceEEEEecCC
Confidence 778888875432 678999999999999987654 5556667665
No 108
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=98.92 E-value=2.7e-08 Score=105.61 Aligned_cols=219 Identities=12% Similarity=0.099 Sum_probs=151.7
Q ss_pred CCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCCCHHHHH
Q 008466 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRD 200 (564)
Q Consensus 121 fC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l~~~~l~ 200 (564)
+|.++|.|| .|+..+ +. + ....-...++..+...+.+.|. -+..+.||....++.+|.+
T Consensus 68 ~C~~~C~fC------aF~~~~----~~-~------~~y~Ls~eeI~~~~~~~~~~G~----~Evli~gG~~p~~~~~y~~ 126 (370)
T COG1060 68 ICVNDCTFC------AFYRKP----GD-P------KAYTLSPEEILEEVREAVKRGI----TEVLIVGGEHPELSLEYYE 126 (370)
T ss_pred hhcCCCCcc------ccccCC----CC-c------cccccCHHHHHHHHHHHHHcCC----eEEEEecCcCCCcchHHHH
Confidence 488999999 886332 11 1 1234556777777777888774 3555778877788888999
Q ss_pred HHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHH-HHHHHHcCCCeEEEccCCCCHHH-HHhc-CC
Q 008466 201 YFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPH-LRQMLSYGCTRLEIGVQSTYEDV-ARDT-NR 277 (564)
Q Consensus 201 ~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~-L~~L~~~G~~rvsiGvQS~~d~v-L~~i-~R 277 (564)
+.++.+++.++..--.. -...+|..-+++..++-+. ++.|+++|.+.+-.|-....++. .+.+ ..
T Consensus 127 ~~~~~ik~~~p~~~i~a------------~s~~ei~~~~~~~~~s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~ 194 (370)
T COG1060 127 ELFRTIKEEFPDLHIHA------------LSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPP 194 (370)
T ss_pred HHHHHHHHhCcchhhcc------------cCHHHhHHHHhccCCCHHHHHHHHHHcCCCcCcCcceeechHHHHHhhCCC
Confidence 99999998766310000 0112344446666676555 99999999987776666655554 4433 34
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcC-CCC-CCCeEEEeeeeecCCChhHHHHHcCCCC
Q 008466 278 GHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFES-PLF-RADGLKIYPTLVIRGTGLYELWKTGRYR 355 (564)
Q Consensus 278 ght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~-~~l-~pd~i~iy~l~v~~GT~L~~~~~~G~~~ 355 (564)
+.+.+.-+++.+.+.+.|++.++-+|+|- +||.++..+.+..+..+ .+. ++-.+.+-++.+..++ -......
T Consensus 195 K~~~~~wle~~~~Ah~lGI~~tatml~Gh-~E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~-----~~~~~~~ 268 (370)
T COG1060 195 KKSPEEWLEIHERAHRLGIPTTATMLLGH-VETREDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGP-----LPAEVVP 268 (370)
T ss_pred CCCHHHHHHHHHHHHHcCCCccceeEEEe-cCCHHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCC-----ccccCCC
Confidence 56889999999999999999999999998 89999998888877654 112 2334444455555555 1123345
Q ss_pred CCCHHHHHHHHHHHHHhCCCceE
Q 008466 356 NYPPEQLVDIVARILAMVPPWTR 378 (564)
Q Consensus 356 ~~~~ee~~~~~~~~~~~lp~~ir 378 (564)
..+..+.+..++-+.-.++.++.
T Consensus 269 ~~~~~~~l~~iAiaRi~l~~~i~ 291 (370)
T COG1060 269 EASLEQDLKAIALARIFLDNNIS 291 (370)
T ss_pred CCCHHHHHHHHHHHHHHccCccc
Confidence 67889999999988888886655
No 109
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=98.92 E-value=7.7e-09 Score=95.37 Aligned_cols=97 Identities=20% Similarity=0.258 Sum_probs=67.8
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.+|+. ++.+++.+||+..+.+......+ .+ ..-|+. .+.|+++ |||+|||++||+.++++|++ +
T Consensus 54 ~~~~~-~~~~~~~ivG~~~~~~~~~~~~~------~~--~~~~i~--~i~V~~~----~rg~GiG~~ll~~~~~~a~~-~ 117 (150)
T PLN02706 54 LICVI-EDAASGRIIATGSVFVERKFIRN------CG--KVGHIE--DVVVDSA----ARGKGLGKKIIEALTEHARS-A 117 (150)
T ss_pred EEEEE-EeCCCCcEEEEEEEEEEeecccC------CC--cEEEEE--EEEECHH----HcCCCHHHHHHHHHHHHHHH-c
Confidence 33444 33335789999988643211110 00 111221 1347776 99999999999999999998 5
Q ss_pred CCcEEEEecCCCcHHHHhhCCCeeeCceEeeec
Q 008466 531 RSRKMAVISGVGTRHYYRKLGYELEGPYMVKYL 563 (564)
Q Consensus 531 g~~~i~~~s~~~a~~fY~klGy~~~g~~m~K~l 563 (564)
|+++|.+........||+|+||+.+|.-|.|.+
T Consensus 118 g~~~i~l~~~~~N~~~y~k~GF~~~g~~~~~~~ 150 (150)
T PLN02706 118 GCYKVILDCSEENKAFYEKCGYVRKEIQMVKYF 150 (150)
T ss_pred CCCEEEEEeccccHHHHHHCcCEEehhheEecC
Confidence 999998776555578999999999999998864
No 110
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=98.88 E-value=5.8e-09 Score=85.84 Aligned_cols=77 Identities=26% Similarity=0.392 Sum_probs=59.9
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe--
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI-- 538 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~-- 538 (564)
++.+||++.++...... .. .-+.|...+.|.++ |||+|+|+.||++++++|++ .|+..|.+.
T Consensus 4 ~~~ivg~~~~~~~~~~~-~~----------~~~~~i~~~~v~~~----~r~~Gig~~L~~~~~~~~~~-~g~~~i~~~~~ 67 (83)
T PF00583_consen 4 DGQIVGFASLRPPPEPF-DH----------GNHAYIHRLAVDPE----YRGQGIGSKLLQAAEEWARK-RGIKRIYLDVS 67 (83)
T ss_dssp TTEEEEEEEEEEEETTT-TT----------TTEEEEEEEEECGG----GTTSSHHHHHHHHHHHHHHH-TTESEEEEEEE
T ss_pred CCEEEEEEEEEECCCcc-cc----------CCEEEEEEEEEcHH----HhhCCCchhhhhhhhhhHHh-cCccEEEEEEe
Confidence 48999999999876322 00 12344445557877 99999999999999999999 599999765
Q ss_pred -cCCCcHHHHhhCCCe
Q 008466 539 -SGVGTRHYYRKLGYE 553 (564)
Q Consensus 539 -s~~~a~~fY~klGy~ 553 (564)
++..+.+||+|+||+
T Consensus 68 ~~n~~~~~~~~k~Gf~ 83 (83)
T PF00583_consen 68 PDNPAARRFYEKLGFE 83 (83)
T ss_dssp TTGHHHHHHHHHTTEE
T ss_pred CCCHHHHHHHHHcCCC
Confidence 355678999999996
No 111
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=98.86 E-value=2.1e-07 Score=96.37 Aligned_cols=151 Identities=15% Similarity=0.172 Sum_probs=108.6
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeE
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rv 260 (564)
|+-| +.||.|+.. ..+..+++.+.+. ...++++.||-- +.+.....|+++|.+||
T Consensus 60 v~kvRlTGGEPllR--~dl~eIi~~l~~~---------------------~~~~islTTNG~-~L~~~a~~Lk~AGl~rV 115 (322)
T COG2896 60 VEKVRLTGGEPLLR--KDLDEIIARLARL---------------------GIRDLSLTTNGV-LLARRAADLKEAGLDRV 115 (322)
T ss_pred cceEEEeCCCchhh--cCHHHHHHHHhhc---------------------ccceEEEecchh-hHHHHHHHHHHcCCcEE
Confidence 6667 889999764 3455566655442 124677777764 77889999999999999
Q ss_pred EEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCc---EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeee
Q 008466 261 EIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFK---VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPT 337 (564)
Q Consensus 261 siGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~---v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l 337 (564)
.+.+.|.+++..++|.+.-.++++++.++.+.++|+. +++.+|-|+ +..++.+.++++.+ .++ .+.+--+
T Consensus 116 NVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgv---Nd~ei~~l~e~~~~---~~~-~lrfIE~ 188 (322)
T COG2896 116 NVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGV---NDDEIEDLLEFAKE---RGA-QLRFIEL 188 (322)
T ss_pred EeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCC---CHHHHHHHHHHHhh---cCC-ceEEEEE
Confidence 9999999999999999877799999999999999995 556777764 55666666666653 333 5666666
Q ss_pred eecCCChhHHHHHcCCCCCCCHHHHHHHHHH
Q 008466 338 LVIRGTGLYELWKTGRYRNYPPEQLVDIVAR 368 (564)
Q Consensus 338 ~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~ 368 (564)
++... ...|..+ ..++.++..+.+..
T Consensus 189 m~~g~---~~~~~~~--~~~~~~~i~~~l~~ 214 (322)
T COG2896 189 MPLGE---GNSWRLD--KYLSLDEILRKLEE 214 (322)
T ss_pred eecCc---ccchhhh--ccccHHHHHHHHHh
Confidence 65543 1223333 24677777777665
No 112
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=98.83 E-value=1.4e-08 Score=99.47 Aligned_cols=269 Identities=13% Similarity=0.191 Sum_probs=167.5
Q ss_pred HHHHHHHHHHhhccCCCccCHHHHHHHHHHHhCCCCCCCHHHHHHhCChhhHHHhhhHHhcCCCCccCCceeEEeec-CC
Q 008466 35 AIAEIVNSMVELSRKNETVDLNAIKSAACRKYGLARAPKLVEMIAALPETDREALLPKLRAKPVRTASGIAVVAVMS-KP 113 (564)
Q Consensus 35 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~i~~~~~~~~~~~l~~~l~~kp~rt~sgv~vvavmt-~p 113 (564)
+.+.+..++...+ ...++.-++|| +-|.- ...||+-+.+..+|++- ..+. |...++|. +.
T Consensus 31 ~~~a~~~~~~~~~-prn~Wtr~eik----~iYdt----PLldL~f~aa~~HRk~H----dp~k------VQqCTLlsIKt 91 (380)
T KOG2900|consen 31 TLGALQYALSLDE-PRNSWTRSEIK----EIYDT----PLLDLTFAAALQHRKWH----DPTK------VQQCTLLSIKT 91 (380)
T ss_pred hhhhhHHHhhccC-CcccccHHHHH----HHhcc----hHHHHHHHHHHHHhhhC----Cccc------eeeeEEEEeec
Confidence 3445566666555 45666665544 45653 35677766666666531 1111 22333332 33
Q ss_pred CCCccccCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCC
Q 008466 114 HRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMS 193 (564)
Q Consensus 114 ~~cphIPfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~ 193 (564)
.+|. ..|.||++. +.--||.+- .+.-...+++.+....+..|- .-+-||..+..
T Consensus 92 GGCs------EDCkYCaQS--------SRy~TGvKA-------~klmk~DeVi~~Ak~AK~~GS-----TRFCmGaAWRD 145 (380)
T KOG2900|consen 92 GGCS------EDCKYCAQS--------SRYDTGVKA-------EKLMKVDEVIKEAKEAKRNGS-----TRFCMGAAWRD 145 (380)
T ss_pred CCcc------cccchhhhh--------cccccchhH-------HHHhhHHHHHHHHHHHHhcCC-----ceeecchhhhh
Confidence 5677 699999642 222244321 122233344444445555552 22346655533
Q ss_pred C--CHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHH
Q 008466 194 L--PADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDV 271 (564)
Q Consensus 194 l--~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~v 271 (564)
+ ....+.++++.|.+.-. .++.+-..-..++.+....|+++|.+-..-++.|.-+--
T Consensus 146 ~~GRk~~fk~IlE~ikevr~---------------------MgmEvCvTLGMv~~qQAkeLKdAGLTAYNHNlDTSREyY 204 (380)
T KOG2900|consen 146 MKGRKSAFKRILEMIKEVRD---------------------MGMEVCVTLGMVDQQQAKELKDAGLTAYNHNLDTSREYY 204 (380)
T ss_pred hccchhHHHHHHHHHHHHHc---------------------CCceeeeeeccccHHHHHHHHhccceecccCccchhhhh
Confidence 2 22344555555554221 233333344567899999999999999999998864443
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHc
Q 008466 272 ARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKT 351 (564)
Q Consensus 272 L~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~ 351 (564)
-+ +=-..|.+|-++.+..++++|++++..=|.|| ||..++-+--+-.+.. ..-.|+.+.|..|..++|||+.+..
T Consensus 205 sk-vItTRtYDdRL~Ti~nvr~aGikvCsGGIlGL-GE~e~DriGlihtLat-mp~HPESvPiN~LvaikGTP~~d~~-- 279 (380)
T KOG2900|consen 205 SK-VITTRTYDDRLQTIKNVREAGIKVCSGGILGL-GESEDDRIGLIHTLAT-MPPHPESVPINRLVAIKGTPMADEK-- 279 (380)
T ss_pred cc-cceecchHHHHHHHHHHHHhcceecccccccc-cccccceeeeeeeecc-CCCCCcccccceEEecCCcccchhh--
Confidence 33 33445789999999999999999999999999 8887764443333322 2456899999999999999998853
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCc
Q 008466 352 GRYRNYPPEQLVDIVARILAMVPPW 376 (564)
Q Consensus 352 G~~~~~~~ee~~~~~~~~~~~lp~~ 376 (564)
-+++.-++.+.+++.+.-.+|+.
T Consensus 280 --~k~l~i~e~lR~IaTARIvMPKa 302 (380)
T KOG2900|consen 280 --SKKLQIDEILRTIATARIVMPKA 302 (380)
T ss_pred --cccccHHHHHHHHhhhheechHH
Confidence 24678899999998877777653
No 113
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=98.82 E-value=9.8e-09 Score=90.03 Aligned_cols=79 Identities=28% Similarity=0.466 Sum_probs=61.4
Q ss_pred eeCCCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHH
Q 008466 445 VANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAER 524 (564)
Q Consensus 445 ~a~gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~ 524 (564)
...+...+|++.++ +.+|||+.+. +. .. --+.| |+++ |||+|+|++||+.+++
T Consensus 39 ~~~~~~~~~v~~~~---~~ivG~~~~~-~~-----------~~---i~~l~-----v~p~----~r~~Gig~~Ll~~~~~ 91 (117)
T PF13673_consen 39 LEEGSHTIFVAEEG---GEIVGFAWLE-PD-----------GE---ISHLY-----VLPE----YRGRGIGRALLDAAEK 91 (117)
T ss_dssp HCTCCCEEEEEEET---TEEEEEEEEE-TC-----------EE---EEEEE-----E-GG----GTTSSHHHHHHHHHHH
T ss_pred HHhcCCEEEEEEEC---CEEEEEEEEc-CC-----------Ce---EEEEE-----EChh----hcCCcHHHHHHHHHHH
Confidence 34444678888887 8999999997 22 11 11233 7777 9999999999999999
Q ss_pred HHHhcCCCcEEEEecCCCcHHHHhhCCC
Q 008466 525 IALGEHRSRKMAVISGVGTRHYYRKLGY 552 (564)
Q Consensus 525 ~A~~~~g~~~i~~~s~~~a~~fY~klGy 552 (564)
+|++ |+..|.+.++..|.+||+++||
T Consensus 92 ~~~~--~~~~l~~~~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 92 EAKD--GIRRLTVEANERARRFYRKLGF 117 (117)
T ss_dssp HHTT--TCEEEEEEC-HHHHHHHHHTT-
T ss_pred HHHc--CCcEEEEEeCHHHHHHHHhCCC
Confidence 9954 8999999999999999999998
No 114
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.79 E-value=1.3e-06 Score=92.99 Aligned_cols=156 Identities=15% Similarity=0.103 Sum_probs=108.0
Q ss_pred EEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCC-
Q 008466 182 VEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCT- 258 (564)
Q Consensus 182 ve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~- 258 (564)
+..| |+| |.|.. ..+.+.++++.+.+.-.. +. .....+|+.|+- +.+ .++.|.+.|..
T Consensus 174 v~nIvfmGmGEPLl-n~d~v~~~i~~l~~~~~~-~~--------------is~r~ItisT~G--l~~-~i~~L~~~gl~~ 234 (368)
T PRK14456 174 ITNIVFMGMGEPLL-NTDNVFEAVLTLSTRKYR-FS--------------ISQRKITISTVG--ITP-EIDRLATSGLKT 234 (368)
T ss_pred ccEEEEeCcCcccc-CHHHHHHHHHHHhccccc-cC--------------cCcCeeEEECCC--ChH-HHHHHHHcCCCc
Confidence 5555 899 99965 445566777777653110 10 012468888874 444 58999999985
Q ss_pred eEEEccCCCCHHHHHhc----CCCCCHHHHHHHHH-HHHHcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCe
Q 008466 259 RLEIGVQSTYEDVARDT----NRGHTVAAVADCFC-LAKDAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRADG 331 (564)
Q Consensus 259 rvsiGvQS~~d~vL~~i----~Rght~~~~~~ai~-~lr~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~ 331 (564)
+|.|.+.|.+++..+.+ +|+++.+++.++++ .+++.|..+. .=+|.|+ +++.++..+.++.+. .+ +-+
T Consensus 235 ~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~Gv-NDs~eda~~L~~~l~---~~-~~~ 309 (368)
T PRK14456 235 KLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGI-NDSPEDARKLIRFAS---RF-FCK 309 (368)
T ss_pred eEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCC-CCCHHHHHHHHHHHh---cC-CCe
Confidence 99999999999999988 35889999999998 5777887754 4678787 688887777776664 23 356
Q ss_pred EEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 008466 332 LKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILA 371 (564)
Q Consensus 332 i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~ 371 (564)
|.+-|+.+..+.+ |++++.+.... +...+.
T Consensus 310 VnlIpyn~~~~~~---------~~~ps~e~i~~-F~~~L~ 339 (368)
T PRK14456 310 INLIDYNSIVNIK---------FEPVCSSTRER-FRDRLL 339 (368)
T ss_pred eEEeeeccCCCCC---------CCCCCHHHHHH-HHHHHH
Confidence 7777777776665 34566665444 444443
No 115
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.76 E-value=2.5e-06 Score=90.52 Aligned_cols=152 Identities=14% Similarity=0.102 Sum_probs=104.6
Q ss_pred EEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCe
Q 008466 182 VEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTR 259 (564)
Q Consensus 182 ve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~r 259 (564)
+..| |+| |.|+. ..+.+.++++.+.+...-.+ ....+|++|+-- .+.++.|.+.|..+
T Consensus 156 i~nIvfmGmGEPLl-n~~~v~~~l~~l~~~~Gl~~----------------~~r~itvsT~G~---~~~i~~L~~~~l~~ 215 (354)
T PRK14460 156 LRNLVFMGMGEPLL-NLDEVMRSLRTLNNEKGLNF----------------SPRRITVSTCGI---EKGLRELGESGLAF 215 (354)
T ss_pred eeEEEEecCCcccC-CHHHHHHHHHHHhhhhccCC----------------CCCeEEEECCCC---hHHHHHHHhCCCcE
Confidence 6666 777 88876 45555556665554211001 123588888653 67889999999999
Q ss_pred EEEccCCCCHHHHHhcCCC---CCHHHHHHHHHHH-HHcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEE
Q 008466 260 LEIGVQSTYEDVARDTNRG---HTVAAVADCFCLA-KDAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRADGLK 333 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i~Rg---ht~~~~~~ai~~l-r~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~ 333 (564)
+.|.+.|.+++..+.+.++ ++.+++.++++.. ...|-++. +-+|.|+ +++.++..+.++.+. .++ .+|.
T Consensus 216 L~iSLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~iey~LI~Gv-NDs~ed~~~l~~~l~---~~~-~~Vn 290 (354)
T PRK14460 216 LAVSLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVTFEYLLLGGV-NDSLEHARELVRLLS---RTK-CKLN 290 (354)
T ss_pred EEEeCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEEEEEEEECCC-CCCHHHHHHHHHHHh---cCC-CcEE
Confidence 9999999999999988664 5889999988754 44455544 4566665 889888777776664 333 4688
Q ss_pred EeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHH
Q 008466 334 IYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVA 367 (564)
Q Consensus 334 iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~ 367 (564)
+-|+.+..|.+ |++++.+++.+...
T Consensus 291 LIpyn~~~g~~---------y~~p~~e~v~~f~~ 315 (354)
T PRK14460 291 LIVYNPAEGLP---------YSAPTEERILAFEK 315 (354)
T ss_pred EEcCCCCCCCC---------CCCCCHHHHHHHHH
Confidence 88888877765 35677766555443
No 116
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=98.74 E-value=3.5e-07 Score=95.88 Aligned_cols=164 Identities=18% Similarity=0.259 Sum_probs=116.6
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEE---EeeCCCCCHHHHHHHHHcCCCe
Q 008466 183 EFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTI---ETRPDYCLGPHLRQMLSYGCTR 259 (564)
Q Consensus 183 e~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eiti---EtrPd~i~~e~L~~L~~~G~~r 259 (564)
+.+|+||.|..++...+.+++..+.. .. + ...+++.. -..|..++++.++.|+++|...
T Consensus 145 ~VvltGGEPL~~~d~~L~~ll~~l~~-i~-~----------------~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~ 206 (321)
T TIGR03821 145 EVILSGGDPLMAKDHRLDWLLNLLEQ-IP-H----------------LKRLRIHTRLPVVIPDRITSGLCDLLANSRLQT 206 (321)
T ss_pred EEEEeCcccccCCchHHHHHHHHHHh-CC-C----------------CcEEEEecCcceeeHHHhhHHHHHHHHhcCCcE
Confidence 34589999999988888888877754 11 1 12233332 2455678999999999999766
Q ss_pred E-EEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEE--EEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEee
Q 008466 260 L-EIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA--HMMPDLPNVGVERDLESFREFFESPLFRADGLKIYP 336 (564)
Q Consensus 260 v-siGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~--~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~ 336 (564)
+ .+.+.+.. ++- +++.+|++.++++|+.+.. -++-|+ +++.+++.+.++.+. .+++.-..+|.
T Consensus 207 ~~~~h~dh~~-Ei~---------d~~~~ai~~L~~~Gi~v~~qtvllkgi-NDn~~~l~~L~~~l~---~~gv~pyyl~~ 272 (321)
T TIGR03821 207 VLVVHINHAN-EID---------AEVADALAKLRNAGITLLNQSVLLRGV-NDNADTLAALSERLF---DAGVLPYYLHL 272 (321)
T ss_pred EEEeeCCChH-hCc---------HHHHHHHHHHHHcCCEEEecceeeCCC-CCCHHHHHHHHHHHH---HcCCeeCcccc
Confidence 5 34555542 221 5588899999999998654 566666 678888888888776 46777777888
Q ss_pred eeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCCh
Q 008466 337 TLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPM 388 (564)
Q Consensus 337 l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~ 388 (564)
+.+..|+.- + ..+.++..+++..+...++-+ .+.+...|+|.
T Consensus 273 ~~p~gg~~~--------f-~v~~~~~~~i~~~l~~~~sG~-~~P~~v~d~pg 314 (321)
T TIGR03821 273 LDKVQGAAH--------F-DVDDERARALMAELLARLPGY-LVPRLVREIPG 314 (321)
T ss_pred cCCCCCccc--------c-cCCHHHHHHHHHHHHHhCCCC-ccceeEEEcCC
Confidence 888887652 2 378999999999999988644 34556667764
No 117
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=98.72 E-value=8.9e-07 Score=89.11 Aligned_cols=153 Identities=9% Similarity=0.084 Sum_probs=102.8
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCC-CHHHHHHHHHcCCCeEEEcc
Q 008466 186 LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYC-LGPHLRQMLSYGCTRLEIGV 264 (564)
Q Consensus 186 ~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i-~~e~L~~L~~~G~~rvsiGv 264 (564)
|.||.|+ +.++.+.++++.+++. . +.++++|+--.. ..+.++.+.+ .++.|.+++
T Consensus 76 ~sGGEPl-l~~~~~~~l~~~~k~~-g---------------------~~i~l~TNG~~~~~~~~~~~ll~-~~d~v~isl 131 (246)
T PRK11145 76 ASGGEAI-LQAEFVRDWFRACKKE-G---------------------IHTCLDTNGFVRRYDPVIDELLD-VTDLVMLDL 131 (246)
T ss_pred EeCccHh-cCHHHHHHHHHHHHHc-C---------------------CCEEEECCCCCCcchHHHHHHHH-hCCEEEECC
Confidence 7899997 4666666777777652 1 246777766432 3577777776 478999999
Q ss_pred CCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEE--EEecCCCCCCHHHHHHHHHHHhcCCCCC-CCeEEEeeeeecC
Q 008466 265 QSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA--HMMPDLPNVGVERDLESFREFFESPLFR-ADGLKIYPTLVIR 341 (564)
Q Consensus 265 QS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~--~lI~GLPget~e~~~~t~~~~~~~~~l~-pd~i~iy~l~v~~ 341 (564)
.+++++..+.+.. .+.+.+++.++.+++.|+++.+ -+|.|+ .++.+++.+.++++. .++ +..+.+.|+.+.+
T Consensus 132 k~~~~e~~~~~~g-~~~~~~l~~i~~l~~~g~~v~i~~~li~g~-nd~~~ei~~l~~~l~---~l~~~~~~~l~~~~~~~ 206 (246)
T PRK11145 132 KQMNDEIHQNLVG-VSNHRTLEFARYLAKRNQKTWIRYVVVPGW-TDDDDSAHRLGEFIK---DMGNIEKIELLPYHELG 206 (246)
T ss_pred CcCChhhcccccC-CChHHHHHHHHHHHhCCCcEEEEEEEECCC-CCCHHHHHHHHHHHH---hcCCcceEEEecCCccc
Confidence 9999999888854 4568889999999999998664 456665 555666666666654 232 5677777777766
Q ss_pred CChhHH---HHHcCCCCCCCHHHHHHHHH
Q 008466 342 GTGLYE---LWKTGRYRNYPPEQLVDIVA 367 (564)
Q Consensus 342 GT~L~~---~~~~G~~~~~~~ee~~~~~~ 367 (564)
+.+... .++--.+++++.+++.+...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ 235 (246)
T PRK11145 207 KHKWEAMGEEYKLDGVKPPSKETMERVKG 235 (246)
T ss_pred hhHHHHcCCcccccCCCCCCHHHHHHHHH
Confidence 654222 12222356777777655443
No 118
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=98.69 E-value=7.1e-08 Score=79.43 Aligned_cols=77 Identities=23% Similarity=0.377 Sum_probs=56.6
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|+.+++ +.+||++.+.... .. .+-..+.|+++ +||+|||++||+++.+.+..
T Consensus 3 ~~~~~~~~~---~~ivG~~~~~~~~----------~~-------~~i~~~~v~~~----~rg~Gig~~ll~~~~~~~~~- 57 (79)
T PF13508_consen 3 ERFFVAEDD---GEIVGFIRLWPNE----------DF-------AYIGYLAVDPE----YRGKGIGSKLLNYLLEKAKS- 57 (79)
T ss_dssp EEEEEEEET---TEEEEEEEEEETT----------TE-------EEEEEEEE-GG----GTTSSHHHHHHHHHHHHHTC-
T ss_pred cEEEEEEEC---CEEEEEEEEEEcC----------CE-------EEEEEEEECHH----HcCCCHHHHHHHHHHHHcCC-
Confidence 345555554 8899999996443 11 12223447877 99999999999999888754
Q ss_pred CCCcEEEEecCCCcHHHHhhCCCee
Q 008466 530 HRSRKMAVISGVGTRHYYRKLGYEL 554 (564)
Q Consensus 530 ~g~~~i~~~s~~~a~~fY~klGy~~ 554 (564)
..+.+.++..+.+||+|+||++
T Consensus 58 ---~~i~l~~~~~~~~fY~~~GF~~ 79 (79)
T PF13508_consen 58 ---KKIFLFTNPAAIKFYEKLGFEE 79 (79)
T ss_dssp ---SEEEEEEEHHHHHHHHHTTEEE
T ss_pred ---CcEEEEEcHHHHHHHHHCcCCC
Confidence 3677777888999999999974
No 119
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=98.68 E-value=1.1e-06 Score=92.08 Aligned_cols=150 Identities=13% Similarity=0.112 Sum_probs=105.6
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCC
Q 008466 187 MGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQS 266 (564)
Q Consensus 187 ~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS 266 (564)
++|.|+..| .+.++++.+++. .+.+.+.|+-. + ++.++.| ..+.+.|.+.+.+
T Consensus 137 l~GEPlL~p--~l~eli~~~k~~----------------------Gi~~~L~TNG~-~-~e~l~~L-~~~~d~i~VSLda 189 (322)
T PRK13762 137 LSGEPTLYP--YLPELIEEFHKR----------------------GFTTFLVTNGT-R-PDVLEKL-EEEPTQLYVSLDA 189 (322)
T ss_pred CCccccchh--hHHHHHHHHHHc----------------------CCCEEEECCCC-C-HHHHHHH-HhcCCEEEEEccC
Confidence 579999764 577777777642 13467788774 3 6788888 7789999999999
Q ss_pred CCHHHHHhcCCC---CCHHHHHHHHHHHHHcCCcEEE--EEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecC
Q 008466 267 TYEDVARDTNRG---HTVAAVADCFCLAKDAGFKVVA--HMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIR 341 (564)
Q Consensus 267 ~~d~vL~~i~Rg---ht~~~~~~ai~~lr~~G~~v~~--~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~ 341 (564)
.++++.+.+.|+ .+.+.+.++++.+++.|..+.+ -++.|+.....+ +.++.+ + .++++.|.+-++.+..
T Consensus 190 ~~~e~~~~i~~~~~~~~~~~vl~~L~~l~~~~~~~~ir~tlv~g~Nd~e~~---~~a~l~-~--~~~~~~Iel~~y~~~G 263 (322)
T PRK13762 190 PDEETYKKINRPVIPDAWERILETLELLPSKKTRTVIRITLVKGYNMHDPE---GFAKLI-E--RANPDFVEVKAYMHVG 263 (322)
T ss_pred CCHHHHHHHhCCCCCCcHHHHHHHHHHHHhCCCCEEEEEEEECCcCccHHH---HHHHHH-H--HcCCCEEEEECCeECC
Confidence 999999999874 5889999999999999887553 566666443333 333333 2 4579999988877765
Q ss_pred CChhHHHHHcCCCCCCCHHHHHHHHHHHHHhC
Q 008466 342 GTGLYELWKTGRYRNYPPEQLVDIVARILAMV 373 (564)
Q Consensus 342 GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~l 373 (564)
... ++ ...-..++.+++.++...+.+..
T Consensus 264 ~~k-~~---l~~~~~p~~eev~~~~~~l~~~~ 291 (322)
T PRK13762 264 YSR-NR---LTRDNMPSHEEVREFAKELAEYT 291 (322)
T ss_pred Ccc-cc---ccccCCcCHHHHHHHHHHHHHhc
Confidence 543 11 11123478888887776666553
No 120
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.67 E-value=7.7e-07 Score=90.56 Aligned_cols=172 Identities=14% Similarity=0.161 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEEE-EcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEee
Q 008466 162 YVQARSRIDQLKRLGHSVDKVEFIL-MGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETR 240 (564)
Q Consensus 162 y~~~l~r~~~l~~~g~~~~kve~I~-~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtr 240 (564)
.+..+.+..+++..| +|.-+ +=|.|+..|. +..|++.+++. ..+--++++||
T Consensus 146 Ll~w~~kVa~~Kgkg-----lEaHlDGqGEP~lYP~--l~~lVqalk~~--------------------~~v~vVSmQTn 198 (414)
T COG2100 146 LLEWFEKVARFKGKG-----LEAHLDGQGEPLLYPH--LVDLVQALKEH--------------------KGVEVVSMQTN 198 (414)
T ss_pred HHHHHHHHHhhhCCC-----eEEEecCCCCCccchh--HHHHHHHHhcC--------------------CCceEEEEeeC
Confidence 334444455555333 78776 6689988876 44455544431 23456899999
Q ss_pred CCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhc-CC-CCCHHHHHHHHHHHHHcCCcEEE--EEecCCCCCCHHHHHH
Q 008466 241 PDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDT-NR-GHTVAAVADCFCLAKDAGFKVVA--HMMPDLPNVGVERDLE 316 (564)
Q Consensus 241 Pd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i-~R-ght~~~~~~ai~~lr~~G~~v~~--~lI~GLPget~e~~~~ 316 (564)
--.++++.++.|.++|.+|+.+.+.|.|++..+.+ ++ -++++.+.+..+.+.++|+.+.. -+++|+ +.+++..
T Consensus 199 g~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvlIaPv~lPG~---ND~E~~~ 275 (414)
T COG2100 199 GVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVLIAPVWLPGV---NDDEMPK 275 (414)
T ss_pred ceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCCEEEeeeecCCc---ChHHHHH
Confidence 99999999999999999999999999999999954 44 58999999999999999999653 555555 4455555
Q ss_pred HHHHHhcC---CCCCCCeEEEeeeeecC-CChhHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 008466 317 SFREFFES---PLFRADGLKIYPTLVIR-GTGLYELWKTGRYRNYPPEQLVDIVARILA 371 (564)
Q Consensus 317 t~~~~~~~---~~l~pd~i~iy~l~v~~-GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~ 371 (564)
-+.++.+. ....|-.+.-| .+.+ |-.- -.-++.+..+....+.+.-.
T Consensus 276 iIe~A~~iGaGkk~p~lgiQky--ipyk~GRkp------~~~k~~~fkeFYrwLrelEk 326 (414)
T COG2100 276 IIEWAREIGAGKKWPPLGIQKY--IPYKFGRKP------VIAKVWPFKEFYRWLRELEK 326 (414)
T ss_pred HHHHHHHhCCCCCCCCcceEEe--eeecccCCc------cccccCcHHHHHHHHHHHHH
Confidence 55555543 22334444333 2222 1110 01245666676666655443
No 121
>PRK03624 putative acetyltransferase; Provisional
Probab=98.65 E-value=8e-08 Score=86.21 Aligned_cols=89 Identities=19% Similarity=0.218 Sum_probs=65.0
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|+.+.+ +.+||++.+.... .... ++ .+.|+++ |||+|+|++||+.++++|++
T Consensus 45 ~~~~v~~~~---~~~vG~~~~~~~~----------~~~~---i~----~i~v~p~----~rg~Gig~~ll~~~~~~~~~- 99 (140)
T PRK03624 45 SLFLVAEVG---GEVVGTVMGGYDG----------HRGW---AY----YLAVHPD----FRGRGIGRALVARLEKKLIA- 99 (140)
T ss_pred ceEEEEEcC---CcEEEEEEeeccC----------CCce---EE----EEEECHH----HhCCCHHHHHHHHHHHHHHH-
Confidence 345666654 7899999876432 1111 11 1336666 99999999999999999999
Q ss_pred CCCcEEEEe---cCCCcHHHHhhCCCeeeCc-eEeeec
Q 008466 530 HRSRKMAVI---SGVGTRHYYRKLGYELEGP-YMVKYL 563 (564)
Q Consensus 530 ~g~~~i~~~---s~~~a~~fY~klGy~~~g~-~m~K~l 563 (564)
.|++++.+. .|..+..||+|+||+..+. .|.+.|
T Consensus 100 ~~~~~~~~~~~~~N~~~~~~y~k~GF~~~~~~~~~~~~ 137 (140)
T PRK03624 100 RGCPKINLQVREDNDAVLGFYEALGYEEQDRISLGKRL 137 (140)
T ss_pred CCCCEEEEEEecCcHHHHHHHHHcCCccccEEehhhcc
Confidence 599998654 4567899999999998874 555544
No 122
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=98.63 E-value=1.9e-06 Score=90.28 Aligned_cols=153 Identities=15% Similarity=0.140 Sum_probs=107.2
Q ss_pred EEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEE
Q 008466 183 EFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLE 261 (564)
Q Consensus 183 e~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvs 261 (564)
..| |.||.|+..|. +.++++.+.+. ...+.+.||--.+ .+.++.++.+|...|+
T Consensus 74 ~~V~i~GGEPLL~pd--l~eiv~~~~~~----------------------g~~v~l~TNG~ll-~~~~~~l~~~~~~~i~ 128 (318)
T TIGR03470 74 PVVSIPGGEPLLHPE--IDEIVRGLVAR----------------------KKFVYLCTNALLL-EKKLDKFEPSPYLTFS 128 (318)
T ss_pred CEEEEeCcccccccc--HHHHHHHHHHc----------------------CCeEEEecCceeh-HHHHHHHHhCCCcEEE
Confidence 345 67999987653 56677766532 1247788887655 4568889999999999
Q ss_pred EccCCCCHHHHHh-cCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeec
Q 008466 262 IGVQSTYEDVARD-TNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVI 340 (564)
Q Consensus 262 iGvQS~~d~vL~~-i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~ 340 (564)
|.+.+.. ++.+. .++..+.+.++++++.++++|+.+.+.+.+ +++++.+++.+.++.+. +++++.+.+.|..+.
T Consensus 129 VSLDG~~-e~hd~~~~~~g~f~~~l~~I~~l~~~G~~v~v~~tv-~~~~n~~ei~~~~~~~~---~lGv~~i~i~p~~~~ 203 (318)
T TIGR03470 129 VHLDGLR-EHHDASVCREGVFDRAVEAIREAKARGFRVTTNTTL-FNDTDPEEVAEFFDYLT---DLGVDGMTISPGYAY 203 (318)
T ss_pred EEEecCc-hhhchhhcCCCcHHHHHHHHHHHHHCCCcEEEEEEE-eCCCCHHHHHHHHHHHH---HcCCCEEEEecCccc
Confidence 9999875 44444 356678999999999999999987664432 25688888888888775 578898888766554
Q ss_pred CCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 341 RGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 341 ~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
..++- .. ..++.++..+++..++..
T Consensus 204 ~~a~~-----~~--~~l~~~e~~~~~~~~~~~ 228 (318)
T TIGR03470 204 EKAPD-----QD--HFLGRRQTKKLFREVLSN 228 (318)
T ss_pred ccccc-----cc--cccCHHHHHHHHHHHHhh
Confidence 33321 11 135677777777666553
No 123
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=98.63 E-value=3.1e-06 Score=91.80 Aligned_cols=165 Identities=15% Similarity=0.182 Sum_probs=110.5
Q ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEE
Q 008466 182 VEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLE 261 (564)
Q Consensus 182 ve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvs 261 (564)
+...|.||.|+..+.....++++.+.+... ...+.+++.||--.++++.++.|++.|+ .|.
T Consensus 69 v~i~f~GGEPlL~~~~~~~~~~~~~~~~~~------------------~~~i~~~i~TNG~ll~~e~~~~l~~~~~-~v~ 129 (412)
T PRK13745 69 VLFTWHGGETLMRPLSFYKKALELQKKYAR------------------GRQIDNCIQTNGTLLTDEWCEFFRENNF-LVG 129 (412)
T ss_pred EEEEEEccccCCCcHHHHHHHHHHHHHHcC------------------CCceEEEEeecCEeCCHHHHHHHHHcCe-EEE
Confidence 445578999999988777777765543322 2346789999999999999999999997 999
Q ss_pred EccCCCCHHHHHhcCC---C-CCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeee
Q 008466 262 IGVQSTYEDVARDTNR---G-HTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPT 337 (564)
Q Consensus 262 iGvQS~~d~vL~~i~R---g-ht~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l 337 (564)
|.+.+. +++-+...+ | .+.+.++++++.++++|+.+.+-..+.- .+.+...+.++++. +++++.+.+.|+
T Consensus 130 ISlDG~-~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~~~i~~vv~~--~n~~~~~e~~~~~~---~lg~~~~~~~p~ 203 (412)
T PRK13745 130 VSIDGP-QEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVEWNAMAVVND--FNADYPLDFYHFFK---ELDCHYIQFAPI 203 (412)
T ss_pred EEecCC-HHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCCEEEEEEEcC--CccccHHHHHHHHH---HcCCCeEEEEec
Confidence 999986 445444332 2 4889999999999999998765444432 33344445555554 577889988887
Q ss_pred eec-----CCChhHHHHH--cCCC--CCCCHHHHHHHHHHHHH
Q 008466 338 LVI-----RGTGLYELWK--TGRY--RNYPPEQLVDIVARILA 371 (564)
Q Consensus 338 ~v~-----~GT~L~~~~~--~G~~--~~~~~ee~~~~~~~~~~ 371 (564)
.+. .|..+...-. .+.. ..++.+++.+.+..+..
T Consensus 204 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~fl~~lf~ 246 (412)
T PRK13745 204 VERIVSHQDGRHLASLAQQEGGELAPFSVTPEQWGNFLCTIFD 246 (412)
T ss_pred cCccccccccccccCcccccccccCCCccCHHHHHHHHHHHHH
Confidence 663 2332221100 0111 13567788777766555
No 124
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.63 E-value=8.1e-06 Score=86.44 Aligned_cols=211 Identities=15% Similarity=0.135 Sum_probs=127.0
Q ss_pred cCCceeEEeecC----CCCCccc-cCCCCCCcCCCCCCCCCCCcccccccCCCcchHHHHhhhcchHHHHHHHHHHHHHc
Q 008466 101 ASGIAVVAVMSK----PHRCPHI-ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRL 175 (564)
Q Consensus 101 ~sgv~vvavmt~----p~~cphI-PfC~~~C~YC~~~~~~~F~~s~~sy~g~ep~~~ra~~~~~~~y~~~l~r~~~l~~~ 175 (564)
..|-.|-+|+-. -..|+.. .-|+.+|.||..+. ..| . .+ -...+.+.+.......
T Consensus 85 ~dg~~ie~v~~~~~~~~t~cissq~GC~l~C~fC~tg~-~g~-------~--r~----------lt~~EI~~qv~~~~~~ 144 (343)
T PRK14469 85 EDGNTIESVMLFHPDRITACISTQVGCPVKCIFCATGQ-SGF-------V--RN----------LTTGEIVSQILAMEKE 144 (343)
T ss_pred CCCCEEEEEEEecCCCeEEEEEecCCCCCcCcCCCCCC-CCc-------c--cc----------CCHHHHHHHHHHHHHh
Confidence 445555555532 1257766 66889999994221 111 0 01 1122333333322221
Q ss_pred CCCCCcEEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHH
Q 008466 176 GHSVDKVEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQML 253 (564)
Q Consensus 176 g~~~~kve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~ 253 (564)
. ..++..| |+| |.|+. ..+.+.++++.+.+.-... .....+|+.|+-. .+.++.|.
T Consensus 145 ~--~~~v~~Vvf~GmGEPLl-n~d~v~~~i~~l~~~~~~~----------------~g~~~itisTnG~---~~~i~~L~ 202 (343)
T PRK14469 145 E--KKKVGNVVYMGMGEPLL-NYENVIKSIKILNHKKMKN----------------IGIRRITISTVGI---PEKIIQLA 202 (343)
T ss_pred c--cCCcCeEEEEccChhhh-hHHHHHHHHHHHhchhccc----------------CCCCeEEEECCCC---hHHHHHHH
Confidence 1 1235555 788 99965 4555556666654321100 0123688888763 57889999
Q ss_pred HcCCC-eEEEccCCCCHHHHHh---cCCCCCHHHHHHHHHHHHHc-CCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCC
Q 008466 254 SYGCT-RLEIGVQSTYEDVARD---TNRGHTVAAVADCFCLAKDA-GFKVV--AHMMPDLPNVGVERDLESFREFFESPL 326 (564)
Q Consensus 254 ~~G~~-rvsiGvQS~~d~vL~~---i~Rght~~~~~~ai~~lr~~-G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~ 326 (564)
+.|.+ ++.+.+.+.+++..+. ++|+++.+++.++++.+.+. +.++. .=+|.|+ +++.++..+.++.+- .
T Consensus 203 ~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~v~i~yvlI~g~-NDs~ed~~~La~llk---~ 278 (343)
T PRK14469 203 EEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNRVTIEYILIKGF-NDEIEDAKKLAELLK---G 278 (343)
T ss_pred hhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCeEEEEEEEECCC-CCCHHHHHHHHHHHh---c
Confidence 99987 7999999999999876 47889999999999866554 66655 3477775 677777666665553 2
Q ss_pred CCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHH
Q 008466 327 FRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVAR 368 (564)
Q Consensus 327 l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~ 368 (564)
+ ..+|.+.|+.+..+ .+++++.+++.+....
T Consensus 279 ~-~~~VnLIpynp~~~----------~~~~ps~e~l~~f~~~ 309 (343)
T PRK14469 279 L-KVFVNLIPVNPTVP----------GLEKPSRERIERFKEI 309 (343)
T ss_pred c-CcEEEEEecCCCCc----------cCCCCCHHHHHHHHHH
Confidence 3 24567766665433 3667776665554433
No 125
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=98.62 E-value=1.4e-07 Score=91.27 Aligned_cols=76 Identities=18% Similarity=0.252 Sum_probs=58.9
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe--
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI-- 538 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~-- 538 (564)
++.+||++.+....+ .. -+++. +.|+++ |||+|||++||++++++|++ .|+.+|.+.
T Consensus 107 ~g~iiG~i~l~~~~~---------~~---~~i~~----l~V~p~----~rGkG~G~~ll~~~~~~a~~-~g~~~I~l~v~ 165 (191)
T TIGR02382 107 SGDPRGYVTLRELND---------TD---ARIGL----LAVFPG----AQSRGIGAELMQTALNWCYA-RGLTRLRVATQ 165 (191)
T ss_pred CCeEEEEEEEEecCC---------Cc---eEEEE----EEECHH----HcCCCHHHHHHHHHHHHHHH-cCCCEEEEEeC
Confidence 368899999975421 11 12331 226665 99999999999999999998 599999776
Q ss_pred -cCCCcHHHHhhCCCeeeCc
Q 008466 539 -SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 539 -s~~~a~~fY~klGy~~~g~ 557 (564)
.|..|..||+|+||+.++.
T Consensus 166 ~~N~~A~~~Y~klGF~~~~~ 185 (191)
T TIGR02382 166 MGNTAALRLYIRSGANIEST 185 (191)
T ss_pred CCCHHHHHHHHHcCCccccc
Confidence 5668999999999999885
No 126
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=98.59 E-value=2.4e-07 Score=82.22 Aligned_cols=82 Identities=21% Similarity=0.259 Sum_probs=60.8
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.+++.+++ +.+||++.+..+. ... .++ .+.|+++ |||+|+|++||+++++++.+.
T Consensus 32 ~~~~~~~~---~~~vg~~~~~~~~----------~~~---~i~----~~~v~~~----~rg~G~g~~ll~~~~~~~~~~- 86 (131)
T TIGR01575 32 CYLLARIG---GKVVGYAGVQIVL----------DEA---HIL----NIAVKPE----YQGQGIGRALLRELIDEAKGR- 86 (131)
T ss_pred eEEEEecC---CeEEEEEEEEecC----------CCe---EEE----EEEECHH----HcCCCHHHHHHHHHHHHHHHc-
Confidence 34444444 7899999987543 111 111 1236665 999999999999999999994
Q ss_pred CCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 531 RSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 531 g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
|.+++.+. .+..+..||+|+||+.++.
T Consensus 87 ~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~ 116 (131)
T TIGR01575 87 GVNEIFLEVRVSNIAAQALYKKLGFNEIAI 116 (131)
T ss_pred CCCeEEEEEecccHHHHHHHHHcCCCcccc
Confidence 99888663 4667899999999998874
No 127
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=98.58 E-value=3.2e-07 Score=85.04 Aligned_cols=87 Identities=23% Similarity=0.365 Sum_probs=61.8
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
..|+..++ +.+||++.+.... .+.. .-+-++.+ -|.+. |||+|||+.||+.+.++|++..
T Consensus 52 ~~~v~~~~---~~~vG~~~~~~~~----~~~~----~~~~~~~~-----~v~p~----~rg~Gig~~ll~~l~~~~~~~~ 111 (162)
T PRK10140 52 KQLVACID---GDVVGHLTIDVQQ----RPRR----SHVADFGI-----CVDSR----WKNRGVASALMREMIEMCDNWL 111 (162)
T ss_pred EEEEEEEC---CEEEEEEEEeccc----cccc----ceEEEEEE-----EECHH----HcCCCHHHHHHHHHHHHHHhhC
Confidence 34555444 7899999997432 1110 01112223 36665 9999999999999999998845
Q ss_pred CCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 531 RSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 531 g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
|+.++.+. +|..|++||+|+||+..|.
T Consensus 112 ~~~~i~l~v~~~N~~a~~~y~k~GF~~~g~ 141 (162)
T PRK10140 112 RVDRIELTVFVDNAPAIKVYKKYGFEIEGT 141 (162)
T ss_pred CccEEEEEEEcCCHHHHHHHHHCCCEEEee
Confidence 88887543 4778999999999999885
No 128
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=98.56 E-value=3.2e-07 Score=84.93 Aligned_cols=96 Identities=18% Similarity=0.245 Sum_probs=69.6
Q ss_pred EEEeeCCCeEE-EEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHH
Q 008466 442 RDYVANEGWET-FLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLME 520 (564)
Q Consensus 442 ~~y~a~gg~e~-fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~ 520 (564)
.+|--..+.++ |++.++ +.+ .||.+--..+. ||.- +-.|..++.|.++ |||||||++|++
T Consensus 47 yrYf~~~wp~~~~~a~d~-~~~-~VGai~ck~~~---~r~~----------~rgyi~mLaV~~e----~Rg~GIg~aLvr 107 (165)
T KOG3139|consen 47 YRYFVPNWPCFCFLALDE-KGD-TVGAIVCKLDT---HRNT----------LRGYIAMLAVDSE----YRGQGIGKALVR 107 (165)
T ss_pred HHhcccCCceEEEEEEcC-CCc-eEEEEEEeccc---cCCc----------ceEEEEEEEechh----hccccHHHHHHH
Confidence 34433344444 555443 344 69998877553 2221 2245555667777 999999999999
Q ss_pred HHHHHHHhcCCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 521 EAERIALGEHRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 521 ~aE~~A~~~~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
.|.+.+++ +|+..|++. +|..|.++|++|||...+.
T Consensus 108 ~aId~m~~-~g~~eVvLeTe~~n~~A~~LY~sLGF~r~~r 146 (165)
T KOG3139|consen 108 KAIDAMRS-RGYSEVVLETEVTNLSALRLYESLGFKRDKR 146 (165)
T ss_pred HHHHHHHH-CCCcEEEEeccccchHHHHHHHhcCceEecc
Confidence 99999999 599999886 4778999999999999773
No 129
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=98.56 E-value=5.9e-06 Score=79.74 Aligned_cols=112 Identities=12% Similarity=0.142 Sum_probs=79.3
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcC-CCe
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYG-CTR 259 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G-~~r 259 (564)
++.| |.||.|+..+. +..+++.+++. . ..+.+.|+- .+++.++.|+++| ++.
T Consensus 63 ~~~i~~sGGEPll~~~--l~~li~~~~~~-g---------------------~~v~i~TNg--~~~~~l~~l~~~g~~~~ 116 (191)
T TIGR02495 63 IDGVVITGGEPTLQAG--LPDFLRKVREL-G---------------------FEVKLDTNG--SNPRVLEELLEEGLVDY 116 (191)
T ss_pred CCeEEEECCcccCcHh--HHHHHHHHHHC-C---------------------CeEEEEeCC--CCHHHHHHHHhcCCCcE
Confidence 3444 78999977554 67777777651 1 246677766 3678999999999 599
Q ss_pred EEEccCCCCHHHHHhcCCCCCHH-HHHHHHHHHHHcCCcEEE--EEecCCCCCCHHHHHHHHHHH
Q 008466 260 LEIGVQSTYEDVARDTNRGHTVA-AVADCFCLAKDAGFKVVA--HMMPDLPNVGVERDLESFREF 321 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i~Rght~~-~~~~ai~~lr~~G~~v~~--~lI~GLPget~e~~~~t~~~~ 321 (564)
|.+.+++..+...+..++..+.+ ++.++++.+++.|+.+.+ -++.|... .+++.+.++.+
T Consensus 117 v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~~~i~~~v~~~~~~--~~ei~~~~~~l 179 (191)
T TIGR02495 117 VAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIPFELRTTVHRGFLD--EEDLAEIATRI 179 (191)
T ss_pred EEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCCEEEEEEEeCCCCC--HHHHHHHHHHh
Confidence 99999997665666667766665 999999999999997554 56667644 44455555544
No 130
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=98.55 E-value=3e-07 Score=84.89 Aligned_cols=86 Identities=28% Similarity=0.425 Sum_probs=63.6
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHH-Hh
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIA-LG 528 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A-~~ 528 (564)
.-.|+.++ +++.+||++.++...+ ..-.-++.+| |.++ +|++|+|+.|++.++++| ++
T Consensus 50 ~~~~~v~~--~~g~iiG~~~~~~~~~----------~~~~~~~~~~-----v~~~----~~~~gig~~l~~~l~~~af~~ 108 (155)
T PF13420_consen 50 QRLFLVAE--EDGKIIGYVSLRDIDP----------YNHTAELSIY-----VSPD----YRGKGIGRKLLDELIEYAFKE 108 (155)
T ss_dssp TEEEEEEE--CTTEEEEEEEEEESSS----------GTTEEEEEEE-----EEGG----GTTSSHHHHHHHHHHHHH-HH
T ss_pred CcEEEEEE--cCCcEEEEEEEEeeec----------cCCEEEEeeE-----EChh----HCCCcHHHHHHHHHHHHhhhc
Confidence 55566665 3489999999985541 1112333333 5655 999999999999999999 77
Q ss_pred cCCCcEEEE---ecCCCcHHHHhhCCCeeeCc
Q 008466 529 EHRSRKMAV---ISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 529 ~~g~~~i~~---~s~~~a~~fY~klGy~~~g~ 557 (564)
+|+++|.+ ..|..+..||+|+||+.+|.
T Consensus 109 -~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~ 139 (155)
T PF13420_consen 109 -LGIHKIYLEVFSSNEKAINFYKKLGFEEEGE 139 (155)
T ss_dssp -TT-CEEEEEEETT-HHHHHHHHHTTEEEEEE
T ss_pred -cCeEEEEEEEecCCHHHHHHHHhCCCEEEEE
Confidence 69999853 35788999999999999984
No 131
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=98.55 E-value=1.1e-05 Score=87.02 Aligned_cols=184 Identities=14% Similarity=0.113 Sum_probs=116.2
Q ss_pred cchHHHHHHHHHHHHHcC-CCCCcEEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEE
Q 008466 159 YNPYVQARSRIDQLKRLG-HSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTI 237 (564)
Q Consensus 159 ~~~y~~~l~r~~~l~~~g-~~~~kve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eiti 237 (564)
+.+-.+++....+..... .+...| ++.|||.|+. .+ .+.++++.+++. . +.+.+
T Consensus 53 ~~t~~evl~ev~~d~~~~~~~~ggV-tisGGGepl~-~~-~l~eLl~~lk~~-g---------------------i~taI 107 (404)
T TIGR03278 53 FIPPQVVLGEVQTSLGFRTGRDTKV-TISGGGDVSC-YP-ELEELTKGLSDL-G---------------------LPIHL 107 (404)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCEE-EEECCccccc-CH-HHHHHHHHHHhC-C---------------------CCEEE
Confidence 344455555554433221 122222 4456666654 33 556777777652 1 23566
Q ss_pred E-eeCC-CCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEE--EEEecCCCCCCHHH
Q 008466 238 E-TRPD-YCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVV--AHMMPDLPNVGVER 313 (564)
Q Consensus 238 E-trPd-~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~--~~lI~GLPget~e~ 313 (564)
+ |+-. ..+++.++.++++|++.|.+.+.|+++++.+.+-..-..+.+++.++.+.+ ++.+. .-+++|+ +++.+
T Consensus 108 ~~TnG~~l~~~e~~~~L~~~gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e-~~~v~~~ivlIPGi-ND~ee- 184 (404)
T TIGR03278 108 GYTSGKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCE-SCEVHAASVIIPGV-NDGDV- 184 (404)
T ss_pred eCCCCcccCCHHHHHHHHHcCCCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHh-cCCEEEEEEEeCCc-cCcHH-
Confidence 6 6654 458999999999999999999999999999985444455899999999998 56644 4677777 44444
Q ss_pred HHHHHHHHhcCCCCCCCeEEEeeeeecCCChh--HHHHHcCCCCCCCHHHHHHHHHHHHHhC
Q 008466 314 DLESFREFFESPLFRADGLKIYPTLVIRGTGL--YELWKTGRYRNYPPEQLVDIVARILAMV 373 (564)
Q Consensus 314 ~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L--~~~~~~G~~~~~~~ee~~~~~~~~~~~l 373 (564)
..++++.+. ++++..+-+.++.......+ ...+....+++.+.++..+++.......
T Consensus 185 l~~ti~~L~---~lg~~~V~L~~y~~~g~~ky~lg~~~~~~~~~~~~~~e~~~~v~~~~~~~ 243 (404)
T TIGR03278 185 LWKTCADLE---SWGAKALILMRFANTEEQGLILGNAPIIPGIKPHTVSEFKNIVRETHKEF 243 (404)
T ss_pred HHHHHHHHH---HCCCCEEEEEecccccccccccCCcCcccCCCCCCHHHHHHHHHHHHHHh
Confidence 347777775 46788777766654322211 1111222356778888887766655443
No 132
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.55 E-value=3.1e-07 Score=95.00 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=61.6
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
+|..|++ ++.+||+.++.. . +++ .+.|+++ |||+|+|++||++++++|+++ |
T Consensus 7 ~~~v~~~--~~~iVG~~~l~~-------------~----~I~----~vaV~p~----~Rg~GiG~~Ll~~l~~~a~~~-g 58 (297)
T cd02169 7 TVGIFDD--AGELIATGSIAG-------------N----VLK----CVAVCPK----YQGEGLALKIVSELINKAYEE-G 58 (297)
T ss_pred EEEEEEE--CCEEEEEEEecc-------------C----EEE----EEEECHH----HcCCCHHHHHHHHHHHHHHHC-C
Confidence 3455543 378999998851 0 111 1347776 999999999999999999995 9
Q ss_pred CcEEEEecCCCcHHHHhhCCCeeeC
Q 008466 532 SRKMAVISGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 532 ~~~i~~~s~~~a~~fY~klGy~~~g 556 (564)
+.++.+.++..+.+||+|+||+..+
T Consensus 59 ~~~i~L~t~~~~~~fYek~GF~~~~ 83 (297)
T cd02169 59 IFHLFLFTKPKNAKFFRGLGFKELA 83 (297)
T ss_pred CCEEEEEEcccHHHHHHHCCCEEec
Confidence 9999999988899999999999888
No 133
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=98.54 E-value=3e-07 Score=88.98 Aligned_cols=78 Identities=18% Similarity=0.261 Sum_probs=60.0
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe--
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI-- 538 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~-- 538 (564)
++.+||++.+....+ .. -+++ .+.|.+. |||||+|++||+.++++|++ +|+++|.+.
T Consensus 110 ~g~~vG~~~l~~~~~---------~~---~~i~----~~~V~p~----~rg~Gig~~Ll~~~~~~a~~-~g~~~i~l~v~ 168 (194)
T PRK10975 110 SGQIQGFVTLRELND---------TD---ARIG----LLAVFPG----AQGRGIGARLMQAALNWCQA-RGLTRLRVATQ 168 (194)
T ss_pred CCCEEEEEEEEecCC---------Cc---eEEE----EEEEChh----hcCCCHHHHHHHHHHHHHHH-cCCCEEEEEeC
Confidence 367899999874320 11 1222 1236766 99999999999999999998 599999664
Q ss_pred -cCCCcHHHHhhCCCeeeCceE
Q 008466 539 -SGVGTRHYYRKLGYELEGPYM 559 (564)
Q Consensus 539 -s~~~a~~fY~klGy~~~g~~m 559 (564)
.|..+..||+|+||+.+|..|
T Consensus 169 ~~N~~a~~~yek~Gf~~~~~~~ 190 (194)
T PRK10975 169 MGNLAALRLYIRSGANIESTAY 190 (194)
T ss_pred CCcHHHHHHHHHCCCeEeEEEe
Confidence 466789999999999999766
No 134
>PRK07922 N-acetylglutamate synthase; Validated
Probab=98.53 E-value=2.9e-07 Score=87.56 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=55.9
Q ss_pred CeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEecCC
Q 008466 462 DILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGV 541 (564)
Q Consensus 462 ~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~~ 541 (564)
+.+||++.+....+ +.+ +++ .+.|+++ |||+|+|++||++++++|++ +|+.++.+.+.
T Consensus 55 ~~iiG~~~~~~~~~---------~~~---~i~----~l~V~p~----~rgkGiG~~Ll~~~~~~a~~-~g~~~l~~~~~- 112 (169)
T PRK07922 55 GEVVGCGALHVMWE---------DLA---EIR----TVAVDPA----ARGRGVGHAIVERLLDVARE-LGLSRVFVLTF- 112 (169)
T ss_pred CcEEEEEEEeecCC---------Cce---EEE----EEEECHH----HhCCCHHHHHHHHHHHHHHH-cCCCEEEEEec-
Confidence 78999998864320 111 222 2347776 99999999999999999999 59999976543
Q ss_pred CcHHHHhhCCCeeeCc
Q 008466 542 GTRHYYRKLGYELEGP 557 (564)
Q Consensus 542 ~a~~fY~klGy~~~g~ 557 (564)
+..||+|+||+..+.
T Consensus 113 -~~~fY~k~GF~~~~~ 127 (169)
T PRK07922 113 -EVEFFARHGFVEIDG 127 (169)
T ss_pred -cHHHHHHCCCEECcc
Confidence 578999999998764
No 135
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=98.52 E-value=7e-06 Score=87.72 Aligned_cols=180 Identities=12% Similarity=0.070 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCC
Q 008466 164 QARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDY 243 (564)
Q Consensus 164 ~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~ 243 (564)
+++.+.++.........+|...+.||.|+....+..+.+..... .... ...+..++.||--.
T Consensus 40 etle~~i~~~~~~~~~~~v~~~w~GGEPlL~~~~f~~~~~~l~~-k~~~-----------------~~~i~~siqTNg~L 101 (378)
T COG0641 40 ETLEEYVRQYIAASNGDKVTFTWQGGEPLLAGLDFYRKAVALQQ-KYAN-----------------GKTISNALQTNGTL 101 (378)
T ss_pred HHHHHHHHHHHhhCCCCeeEEEEECCccccchHHHHHHHHHHHH-HHhc-----------------CCeeEEEEEEcccc
Confidence 34444443333333345577889999999988876666555332 2221 23456779999999
Q ss_pred CCHHHHHHHHHcCCCeEEEcc---CCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHH
Q 008466 244 CLGPHLRQMLSYGCTRLEIGV---QSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFRE 320 (564)
Q Consensus 244 i~~e~L~~L~~~G~~rvsiGv---QS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~ 320 (564)
++++..+.+++.|+ .|.|.+ +..+|......+=.-|.+.+.++++.|++.++++++... +.-++.+...+.+++
T Consensus 102 L~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v~~~~~~v--v~~~n~~~~~ei~~~ 178 (378)
T COG0641 102 LNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAHGVDFNTLTV--VNRQNVLHPEEIYHF 178 (378)
T ss_pred cCHHHHHHHHhcCc-eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHcCCcEEEEEE--EchhHhhCHHHHHHH
Confidence 99999999999999 777755 444444443333334799999999999999888776555 678888888888888
Q ss_pred HhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 321 FFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 321 ~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
+.+ ++...+.+.|++...++.. .+ .. ...+.+++.+.+..+...
T Consensus 179 l~~---~g~~~i~fip~~~~~~~~~-~~---~~-~~~~~~~~~~fl~~~~~~ 222 (378)
T COG0641 179 LKS---EGSKFIQFIPLVESDNRGD-SL---LE-FSVTAEEYGQFLIAIFDE 222 (378)
T ss_pred HHH---cccceEEEEecccCCCCCc-cc---cc-cccCHHHHHHHHHHHHHH
Confidence 863 4588899988765555431 11 11 135677777777666654
No 136
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.52 E-value=2.1e-05 Score=83.66 Aligned_cols=155 Identities=17% Similarity=0.188 Sum_probs=102.7
Q ss_pred EEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCC-C
Q 008466 182 VEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGC-T 258 (564)
Q Consensus 182 ve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~-~ 258 (564)
|..| |+| |.|+ +..+.+.++++.+.+... +. .....+|++|+-- . ..+..+.+.+. .
T Consensus 160 v~~Vv~~GmGEPL-ln~~~v~~~l~~l~~~~g--~~--------------~s~r~itvsT~G~--~-~~i~~l~d~~l~~ 219 (356)
T PRK14455 160 VSHIVVMGIGEPF-DNYDNVMDFLRIINDDKG--LA--------------IGARHITVSTSGI--A-PKIYDFADEGLQI 219 (356)
T ss_pred cceEEEecccccc-CCHHHHHHHHHHHhcccC--cc--------------cCCCceEEEecCc--h-HhHHHHHhcccCe
Confidence 6555 676 8885 456677777777764311 00 0123578887553 2 35556666653 4
Q ss_pred eEEEccCCCCHHHHHh---cCCCCCHHHHHHHHHHHHH-cCCcEEE-EEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEE
Q 008466 259 RLEIGVQSTYEDVARD---TNRGHTVAAVADCFCLAKD-AGFKVVA-HMMPDLPNVGVERDLESFREFFESPLFRADGLK 333 (564)
Q Consensus 259 rvsiGvQS~~d~vL~~---i~Rght~~~~~~ai~~lr~-~G~~v~~-~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~ 333 (564)
.+.+.+-+++++..+. ++|+++.+++.++++.+.+ .|.++.+ .+|++-.+++.++..+.++.+. .++ .+|.
T Consensus 220 ~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~---~l~-~~Vn 295 (356)
T PRK14455 220 NLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLK---GIK-CHVN 295 (356)
T ss_pred eEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHh---cCC-CcEE
Confidence 5779999999999985 7889999999999998766 4556654 5555555899888777776664 333 5777
Q ss_pred EeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHH
Q 008466 334 IYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARI 369 (564)
Q Consensus 334 iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~ 369 (564)
+-|+.+.++.+ |++++.+...+....+
T Consensus 296 LIPynp~~~~k---------y~~ps~e~l~~f~~~L 322 (356)
T PRK14455 296 LIPVNPVPERD---------YVRTPKEDIFAFEDTL 322 (356)
T ss_pred EEecCcCCCCC---------CcCCCHHHHHHHHHHH
Confidence 77887776653 5567777666554433
No 137
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.52 E-value=1.1e-05 Score=84.91 Aligned_cols=154 Identities=18% Similarity=0.136 Sum_probs=101.2
Q ss_pred cEEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCC-
Q 008466 181 KVEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGC- 257 (564)
Q Consensus 181 kve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~- 257 (564)
++..| ||| |.|+. +.+.+..+++.+.+.-. +. .....+||+|+-- . ..+..+.+.|.
T Consensus 144 ~i~nIvfmGmGEPll-N~d~v~~~i~~l~~~~~--~~--------------~~~~~ItVsTnG~--~-p~i~~l~~~~~~ 203 (336)
T PRK14470 144 PITGVVFMGQGEPFL-NYDEVLRAAYALCDPAG--AR--------------IDGRRISISTAGV--V-PMIRRYTAEGHK 203 (336)
T ss_pred CCCEEEEEecCcccc-CHHHHHHHHHHHhCccc--cc--------------cCCCceEEEecCC--h-HHHHHHHhcCCC
Confidence 46666 889 99965 44556666666653210 00 1235788998753 2 35556666564
Q ss_pred CeEEEccCCCCHHHHHhcC---CCCCHHHHHHHHHHHHHcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeE
Q 008466 258 TRLEIGVQSTYEDVARDTN---RGHTVAAVADCFCLAKDAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRADGL 332 (564)
Q Consensus 258 ~rvsiGvQS~~d~vL~~i~---Rght~~~~~~ai~~lr~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i 332 (564)
..|.+.+.+.+++..+.+. ++++.+++.++++...+.+-++. .-+|.|+ +++.++..+..+.+- .+ +-++
T Consensus 204 ~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri~ieyvLI~Gv-NDseeda~~La~llk---~l-~~~v 278 (336)
T PRK14470 204 FRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRVTLEYVMISGV-NVGEEDAAALGRLLA---GI-PVRL 278 (336)
T ss_pred ceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCeEEEEEEEecc-cCCHHHHHHHHHHHh---cC-CCeE
Confidence 7899999999999999884 46789999999999988776654 4678888 567776555554442 23 2366
Q ss_pred EEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHH
Q 008466 333 KIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARI 369 (564)
Q Consensus 333 ~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~ 369 (564)
.+.|+.+.++ .|++++.++.......+
T Consensus 279 nlI~~N~~~~----------~~~~p~~~~i~~f~~~l 305 (336)
T PRK14470 279 NPIAVNDATG----------RYRPPDEDEWNAFRDAL 305 (336)
T ss_pred EEeccCCCCC----------CccCCCHHHHHHHHHHH
Confidence 6666665332 57778877665554433
No 138
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.50 E-value=2e-05 Score=83.34 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=101.3
Q ss_pred EEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCC--
Q 008466 182 VEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGC-- 257 (564)
Q Consensus 182 ve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~-- 257 (564)
+..| |+| |.|+. ..+.+.++++.+.+.++ + ....+|++|.- ..+.++.|.+.++
T Consensus 149 ~~~IvfmGmGEPll-n~~~v~~~i~~l~~~~~--i----------------~~r~itvST~G---~~~~i~~L~~~~~~~ 206 (345)
T PRK14457 149 VSHVVFMGMGEPLL-NIDEVLAAIRCLNQDLG--I----------------GQRRITVSTVG---VPKTIPQLAELAFQR 206 (345)
T ss_pred CCEEEEEecCcccc-CHHHHHHHHHHHhcccC--C----------------ccCceEEECCC---chhhHHHHHhhhhhh
Confidence 5555 888 99976 45555556665544322 1 12357888733 2345777777662
Q ss_pred -----CeEEEccCCCCHHHHHhc---CCCCCHHHHHHHHHH-HHHcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCC
Q 008466 258 -----TRLEIGVQSTYEDVARDT---NRGHTVAAVADCFCL-AKDAGFKVV--AHMMPDLPNVGVERDLESFREFFESPL 326 (564)
Q Consensus 258 -----~rvsiGvQS~~d~vL~~i---~Rght~~~~~~ai~~-lr~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~ 326 (564)
..+.+.+-+.+++..+.+ +++++.+++.+++.. +.+.|-++. .=+|.|+ +++.++..+..+.+- .
T Consensus 207 ~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGv-NDs~e~a~~La~~l~---~ 282 (345)
T PRK14457 207 LGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGV-NDLPEHAEELANLLR---G 282 (345)
T ss_pred cccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCc-CCCHHHHHHHHHHHh---c
Confidence 368899999999999988 456788999887755 667786655 5788998 888888777776664 3
Q ss_pred CCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHH
Q 008466 327 FRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVA 367 (564)
Q Consensus 327 l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~ 367 (564)
++ -+|.+-|+.+.++. .|++++.++..+...
T Consensus 283 l~-~~VnLIPynp~~~~---------~~~~ps~e~i~~f~~ 313 (345)
T PRK14457 283 FQ-SHVNLIPYNPIDEV---------EFQRPSPKRIQAFQR 313 (345)
T ss_pred CC-CeEEEecCCCCCCC---------CCCCCCHHHHHHHHH
Confidence 43 36777777776654 456787777555443
No 139
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=98.49 E-value=2.8e-05 Score=82.59 Aligned_cols=152 Identities=14% Similarity=0.137 Sum_probs=101.8
Q ss_pred cEEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCC
Q 008466 181 KVEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCT 258 (564)
Q Consensus 181 kve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~ 258 (564)
++..| |+| |.|+. ..+.+.++++.+.+... +. .....+|++|+-- .+.+..|.+.+..
T Consensus 155 ~v~nVvfmGmGEPLl-n~d~v~~~l~~l~~~~g--~~--------------i~~~~itisT~G~---~~~i~~l~~~~l~ 214 (355)
T TIGR00048 155 RVSNVVFMGMGEPLL-NLNEVVKAMEIMNDDFG--LG--------------ISKRRITISTSGV---VPKIDILADKMLQ 214 (355)
T ss_pred CeeEEEEecCCchhh-CHHHHHHHHHHhhcccc--cC--------------cCCCeEEEECCCc---hHHHHHHHHhCCC
Confidence 36655 777 88865 55555666666653211 00 0113688888663 2578888887764
Q ss_pred -eEEEccCCCCHHHHHhc---CCCCCHHHHHHHHHH-HHHcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCe
Q 008466 259 -RLEIGVQSTYEDVARDT---NRGHTVAAVADCFCL-AKDAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRADG 331 (564)
Q Consensus 259 -rvsiGvQS~~d~vL~~i---~Rght~~~~~~ai~~-lr~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~ 331 (564)
++.+.+-+.+++..+.+ +|.++.+++.++++. +++.|.++. .-+|.|+ +++.++..+..+.+. .++ -+
T Consensus 215 ~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~Gv-NDs~e~a~~La~llk---~l~-~~ 289 (355)
T TIGR00048 215 VALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGV-NDQVEHAEELAELLK---GTK-CK 289 (355)
T ss_pred cEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCC-CCCHHHHHHHHHHHh---cCC-Cc
Confidence 78899999999999876 677889999998875 566787755 5788888 778787666665553 343 46
Q ss_pred EEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHH
Q 008466 332 LKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIV 366 (564)
Q Consensus 332 i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~ 366 (564)
|.+-|+.+.++. .|++++.+++.+..
T Consensus 290 VnLIPynp~~~~---------~~~~ps~e~i~~f~ 315 (355)
T TIGR00048 290 VNLIPWNPFPEA---------DYERPSNEQIDRFA 315 (355)
T ss_pred eEEEecccCCCC---------CCCCCCHHHHHHHH
Confidence 777777766554 35667766655443
No 140
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=98.49 E-value=1.6e-07 Score=87.48 Aligned_cols=77 Identities=23% Similarity=0.371 Sum_probs=58.0
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEecC
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISG 540 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~ 540 (564)
++.+||.+||.--.+. +-|+.-| .|-|.++ .||+|+|+.||+.+|+|+|.. |++++.+.+.
T Consensus 65 ~~~VigH~rLS~i~n~--------~~al~VE------sVVV~k~----~RG~GFGk~lMk~~E~~~R~~-gf~~~yLsT~ 125 (225)
T KOG3397|consen 65 NDEVLGHSRLSHLPNR--------DHALWVE------SVVVKKD----QRGLGFGKFLMKSTEKWMREK-GFNEAYLSTD 125 (225)
T ss_pred ccceeeeeccccCCCC--------CceeEEE------EEEEehh----hccccHHHHHHHHHHHHHHHh-hhhheeeecc
Confidence 4788999999633222 1222222 2336776 999999999999999999995 9999988665
Q ss_pred CCcHHHHhhCCCeeeCc
Q 008466 541 VGTRHYYRKLGYELEGP 557 (564)
Q Consensus 541 ~~a~~fY~klGy~~~g~ 557 (564)
+-.+||+++||+...+
T Consensus 126 -DQ~~FYe~lGYe~c~P 141 (225)
T KOG3397|consen 126 -DQCRFYESLGYEKCDP 141 (225)
T ss_pred -cchhhhhhhcccccCc
Confidence 4467999999998775
No 141
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=98.48 E-value=3e-06 Score=84.72 Aligned_cols=100 Identities=21% Similarity=0.178 Sum_probs=88.7
Q ss_pred EEEEEe-eCCCC-CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcC--CcEEEEEecCCCCC
Q 008466 234 GMTIET-RPDYC-LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAG--FKVVAHMMPDLPNV 309 (564)
Q Consensus 234 eitiEt-rPd~i-~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G--~~v~~~lI~GLPge 309 (564)
..+||+ -||.. .++.|+.+.++|.+-+.-++||. ++....+.++-+.+..++.++.+|+.+ +..-+.+|+|| ||
T Consensus 148 ~t~iEvL~PDF~G~~~al~~v~~~~pdV~nHNvETV-prL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGL-GE 225 (306)
T COG0320 148 QTTIEVLTPDFRGNDDALEIVADAGPDVFNHNVETV-PRLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGL-GE 225 (306)
T ss_pred CceEEEeCccccCCHHHHHHHHhcCcchhhcccccc-hhcccccCCCCcHHHHHHHHHHHHHhCCCcccccceeeec-CC
Confidence 478886 88866 68899999999999999999998 777788999999999999999999998 55568999999 99
Q ss_pred CHHHHHHHHHHHhcCCCCCCCeEEEeeee
Q 008466 310 GVERDLESFREFFESPLFRADGLKIYPTL 338 (564)
Q Consensus 310 t~e~~~~t~~~~~~~~~l~pd~i~iy~l~ 338 (564)
|.+++.++++.+. +.++|.++|-+++
T Consensus 226 t~~Ev~e~m~DLr---~~gvdilTiGQYl 251 (306)
T COG0320 226 TDEEVIEVMDDLR---SAGVDILTIGQYL 251 (306)
T ss_pred cHHHHHHHHHHHH---HcCCCEEEecccc
Confidence 9999999999997 5789999998754
No 142
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.48 E-value=3e-05 Score=82.21 Aligned_cols=155 Identities=16% Similarity=0.105 Sum_probs=97.4
Q ss_pred EEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCe
Q 008466 182 VEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTR 259 (564)
Q Consensus 182 ve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~r 259 (564)
++.| |+| |.|+. ..+.+.++++.+.+... +. -....++++|+- +.+ .+..+....-..
T Consensus 149 i~~IvfmG~GEPl~-n~~~vi~~l~~l~~~~g--l~--------------~s~r~itVsTnG--l~~-~i~~l~~~~~~~ 208 (349)
T PRK14463 149 VRNIVFMGMGEPLA-NLDNVIPALQILTDPDG--LQ--------------FSTRKVTVSTSG--LVP-EMEELGREVTVN 208 (349)
T ss_pred ccEEEEecCCcchh-cHHHHHHHHHHhhcccc--cC--------------cCCceEEEECCC--chH-HHHHHhhccCeE
Confidence 4444 777 99874 44444444554432111 00 112367888765 233 344444443345
Q ss_pred EEEccCCCCHHHHHhc---CCCCCHHHHHHHHHHHHHc-CCcEEE-EEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEE
Q 008466 260 LEIGVQSTYEDVARDT---NRGHTVAAVADCFCLAKDA-GFKVVA-HMMPDLPNVGVERDLESFREFFESPLFRADGLKI 334 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i---~Rght~~~~~~ai~~lr~~-G~~v~~-~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~i 334 (564)
+.+.+.|.++++.+.+ ||.++.+++.+++...... +-++.+ +++++-.+++.++..+..+.+. .++ -++.+
T Consensus 209 LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~---~l~-~~vnl 284 (349)
T PRK14463 209 LAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLS---DIP-SKVNL 284 (349)
T ss_pred EEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHh---ccC-ceEEE
Confidence 6689999999999997 8899999999998776654 345554 5555556999888777776664 333 36777
Q ss_pred eeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHH
Q 008466 335 YPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARI 369 (564)
Q Consensus 335 y~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~ 369 (564)
-|+.+..| ..|++++.++..+....+
T Consensus 285 IPyn~~~~---------~~~~~ps~e~i~~f~~~L 310 (349)
T PRK14463 285 IPFNEHEG---------CDFRSPTQEAIDRFHKYL 310 (349)
T ss_pred EecCCCCC---------CCCCCCCHHHHHHHHHHH
Confidence 77776655 247778877666554433
No 143
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=98.48 E-value=5.3e-07 Score=91.99 Aligned_cols=85 Identities=16% Similarity=0.209 Sum_probs=63.2
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
..+|+.+.+ +.+||++.+.+.. . .+. -+++ .+.|+++ |||+|+|++||+.++++|++
T Consensus 158 ~~~~v~~~~---g~iVG~~~~~~~~-~-------~~~---~eI~----~i~V~P~----yRG~GiG~~Ll~~l~~~a~~- 214 (266)
T TIGR03827 158 VVYFGVEDG---GKIIALASAEMDP-E-------NGN---AEMT----DFATLPE----YRGKGLAKILLAAMEKEMKE- 214 (266)
T ss_pred cEEEEEEEC---CEEEEEEEEecCC-C-------CCc---EEEE----EEEECHH----HcCCCHHHHHHHHHHHHHHH-
Confidence 445666665 7899999875432 0 011 1232 1337776 99999999999999999999
Q ss_pred CCCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 530 HRSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 530 ~g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
.|+..+.+. .+.++..+|+|+||+.+|.
T Consensus 215 ~g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~ 245 (266)
T TIGR03827 215 KGIRTAYTIARASSYGMNITFARLGYAYGGT 245 (266)
T ss_pred CCCcEEEeehhhcchhHHHHHHHcCCccccE
Confidence 599998554 4668899999999999884
No 144
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.48 E-value=3.3e-05 Score=81.73 Aligned_cols=153 Identities=13% Similarity=0.113 Sum_probs=99.1
Q ss_pred CcEEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCC
Q 008466 180 DKVEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGC 257 (564)
Q Consensus 180 ~kve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~ 257 (564)
.++..| |+| |.|+. ..+.+.++++.+.+... +. . ....+|+.|.-. ...++.|.+.+.
T Consensus 142 ~~i~~Vvf~GmGEPll-n~~~v~~~i~~l~~~~g--~~-------------l-~~r~itvST~G~---~~~i~~L~~~~l 201 (343)
T PRK14468 142 REIRNVVLMGMGEPLL-NYENVLKAARIMLHPQA--LA-------------M-SPRRVTLSTVGI---PKGIRRLAEEDL 201 (343)
T ss_pred CCccEEEEeccCcccc-CHHHHHHHHHHhccccc--cc-------------c-cCceEEEECCCC---hHHHHHHHHhCc
Confidence 356666 787 99976 44444444444421100 00 0 112588888662 457788888776
Q ss_pred C-eEEEccCCCCHHHHHhcC---CCCCHHHHHHHHHHH-HHcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCC
Q 008466 258 T-RLEIGVQSTYEDVARDTN---RGHTVAAVADCFCLA-KDAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRAD 330 (564)
Q Consensus 258 ~-rvsiGvQS~~d~vL~~i~---Rght~~~~~~ai~~l-r~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd 330 (564)
. .|.+.+-+.+++..+++. ++++.+++.++++.. ++.+-++. .-+|.|+ +++.++..+..+.+. .+ ..
T Consensus 202 ~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~~V~ieyvLI~Gv-NDs~e~~~~L~~ll~---~~-~~ 276 (343)
T PRK14468 202 GVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGRRVTLEYTMLKGV-NDHLWQAELLADLLR---GL-VS 276 (343)
T ss_pred CcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCC-cCCHHHHHHHHHHHh---cC-Cc
Confidence 4 799999999999999884 678999999999744 44555554 5677787 788877666666554 23 34
Q ss_pred eEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHH
Q 008466 331 GLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIV 366 (564)
Q Consensus 331 ~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~ 366 (564)
+|.+-|+.+.++ ..|++++.++..+..
T Consensus 277 ~VnLIPynp~~~---------~~~~~ps~e~i~~f~ 303 (343)
T PRK14468 277 HVNLIPFNPWEG---------SPFQSSPRAQILAFA 303 (343)
T ss_pred EEEEEcCCCCCC---------CCCCCCCHHHHHHHH
Confidence 666666665443 346778877655543
No 145
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.47 E-value=3.2e-05 Score=82.32 Aligned_cols=159 Identities=16% Similarity=0.168 Sum_probs=105.4
Q ss_pred CcEEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCC
Q 008466 180 DKVEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGC 257 (564)
Q Consensus 180 ~kve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~ 257 (564)
.+|..| ||| |.|. ++.+.+.++++.+.+..+..+. .....+|++|.-- ...++.|.+.+.
T Consensus 175 ~~i~nVvfmGmGEPL-lN~d~V~~~i~~l~~~~~~g~g--------------is~r~ITvST~Gl---~~~i~~la~~~l 236 (373)
T PRK14459 175 GRLSNVVFMGMGEPL-ANYKRVVAAVRRITAPAPEGLG--------------ISARNVTVSTVGL---VPAIRKLADEGL 236 (373)
T ss_pred CceeEEEEecCCcch-hhHHHHHHHHHHHhCcccccCC--------------ccCCEEEEECcCc---hhHHHHHHHhcC
Confidence 346666 899 9995 3556666677766542100000 1224688887531 236778888776
Q ss_pred C-eEEEccCCCCHHHHHhcC---CCCCHHHHHHHHHHHH-HcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCC--
Q 008466 258 T-RLEIGVQSTYEDVARDTN---RGHTVAAVADCFCLAK-DAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFR-- 328 (564)
Q Consensus 258 ~-rvsiGvQS~~d~vL~~i~---Rght~~~~~~ai~~lr-~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~-- 328 (564)
. +|.+.+-|.+++..+.+- |.++.+++.++++... +.|.++. .-+|.|+ +++.++..+..+.+. .++
T Consensus 237 ~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~Gv-NDs~e~a~~L~~llk---~~~~~ 312 (373)
T PRK14459 237 PVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDI-NDQPWRADLLGKKLH---GRGGG 312 (373)
T ss_pred CeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCC-CCCHHHHHHHHHHHh---hccCC
Confidence 4 799999999999998654 4689999999966554 6788755 4688887 788887666665553 232
Q ss_pred CCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHH
Q 008466 329 ADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARI 369 (564)
Q Consensus 329 pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~ 369 (564)
+-+|.+-|+.+.+|.+ |+.++.+...+....+
T Consensus 313 ~~~VNLIpyNp~~~~~---------y~~~~~~~~~~F~~~L 344 (373)
T PRK14459 313 WVHVNLIPLNPTPGSK---------WTASPPEVEREFVRRL 344 (373)
T ss_pred CeEEEEEccCCCCCCC---------CcCCCHHHHHHHHHHH
Confidence 5678888888877763 4556666555544433
No 146
>PRK09831 putative acyltransferase; Provisional
Probab=98.43 E-value=5.1e-07 Score=83.33 Aligned_cols=72 Identities=10% Similarity=0.212 Sum_probs=55.0
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
+++.+++ +.+|||+.+.. . .++ .+-|.++ +||+|||++||+.+++.+++
T Consensus 55 ~~v~~~~---~~iiG~~~~~~-------------~----~i~----~~~v~p~----~~g~GiG~~Ll~~~~~~~~~--- 103 (147)
T PRK09831 55 VRVAVIN---AQPVGFITCIE-------------H----YID----MLFVDPE----YTRRGVASALLKPLIKSESE--- 103 (147)
T ss_pred eEEEEEC---CEEEEEEEehh-------------c----eee----eEEECHH----HcCCCHHHHHHHHHHHHhhh---
Confidence 5666555 88999998741 0 011 1226766 99999999999999998764
Q ss_pred CcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
+.+.++..|.+||+|+||+.+|.
T Consensus 104 ---l~v~~~~~a~~~Y~k~Gf~~~g~ 126 (147)
T PRK09831 104 ---LTVDASITAKPFFERYGFQTVKQ 126 (147)
T ss_pred ---eEeecchhhHHHHHHCCCEEeec
Confidence 46667788999999999999885
No 147
>PHA01807 hypothetical protein
Probab=98.43 E-value=8.8e-07 Score=83.01 Aligned_cols=80 Identities=18% Similarity=0.160 Sum_probs=58.5
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeee-eecccccccCCCchhhhhcCHHHHHHHHHHHHHHh
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELH-VYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG 528 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relh-vyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~ 528 (564)
...|+++++ +.+|||+.+.... ..|..++ -+++ +| |.++ |||+|||++||+.++++|++
T Consensus 53 ~~~lva~~d---g~lvG~~~l~~~~-~~~~~~i-------~~l~~lY-----V~pe----~RG~GiG~~Ll~~~~~~Ar~ 112 (153)
T PHA01807 53 RTELLVFRD---GKLAGIAVLVFED-DPHVGPC-------LGVQWQY-----VLPE----YRNAGVAREFLRELIRLAGE 112 (153)
T ss_pred ceEEEEEEC---CEEEEEEEEEcCC-Ccceeee-------ccceeEE-----ECHH----HcCCCHHHHHHHHHHHHHHH
Confidence 445777765 8899999997553 2222111 1222 34 7776 99999999999999999999
Q ss_pred cCCCcEEEEec---CCCcHHHHhhC
Q 008466 529 EHRSRKMAVIS---GVGTRHYYRKL 550 (564)
Q Consensus 529 ~~g~~~i~~~s---~~~a~~fY~kl 550 (564)
+|+..|.+.. +..|..||++.
T Consensus 113 -~G~~~l~l~v~~~n~~a~~~y~~~ 136 (153)
T PHA01807 113 -GNLPLIAFSHREGEGRYTIHYRRV 136 (153)
T ss_pred -CCCCEEEEEecCCcHHHHHHHHhc
Confidence 5999997664 55679999974
No 148
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=98.41 E-value=1.2e-06 Score=78.12 Aligned_cols=84 Identities=20% Similarity=0.330 Sum_probs=58.5
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeee-eecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELH-VYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relh-vyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
.+++.+++ +.|||.+.+-... -.+.+ +.+. .+-..|.|+++ |||+|+|++||+++++.++++
T Consensus 42 ~~~~~~~~---~~ivg~~~~~~~~-----~~~~g-----~~~~~~~i~~v~v~p~----~R~~Gl~~~L~~~~~~~~~~~ 104 (127)
T PF13527_consen 42 RCVVAEDD---GKIVGHVGLIPRR-----LSVGG-----KKFKAAYIGDVAVDPE----YRGRGLGRQLMRALLERARER 104 (127)
T ss_dssp EEEEEEET---TEEEEEEEEEEEE-----EEETT-----EEEEEEEEEEEEE-GG----GTTSSHHHHHHHHHHHHHHHT
T ss_pred cEEEEEEC---CEEEEEEEEEEEE-----EEECC-----EEEEEEEEEEEEECHH----HcCCCHHHHHHHHHHHHHHhC
Confidence 56777775 8899999875221 01111 1222 33345556766 999999999999999999995
Q ss_pred CCCcEEEEecCCCcHHHHhhCCCee
Q 008466 530 HRSRKMAVISGVGTRHYYRKLGYEL 554 (564)
Q Consensus 530 ~g~~~i~~~s~~~a~~fY~klGy~~ 554 (564)
|+.-+.+.+ ....||+|+||+.
T Consensus 105 -g~~~~~l~~--~~~~~Y~~~G~~~ 126 (127)
T PF13527_consen 105 -GVPFIFLFP--SSPPFYRRFGFEY 126 (127)
T ss_dssp -T-SEEEEE---SSHHHHHHTTEEE
T ss_pred -CCCEEEEec--CChhhhhcCCCEE
Confidence 999887766 4589999999985
No 149
>PRK07757 acetyltransferase; Provisional
Probab=98.41 E-value=1.6e-06 Score=79.97 Aligned_cols=80 Identities=19% Similarity=0.299 Sum_probs=58.9
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
+|+...+ +.+||++.+..... .. -+++ -+.|+++ |||+|+|++||+.++++|++ .|
T Consensus 43 ~~i~~~~---~~lvG~~~l~~~~~---------~~---~~i~----~v~V~p~----~rg~Glg~~Ll~~l~~~a~~-~g 98 (152)
T PRK07757 43 FYVAEEE---GEIVGCCALHILWE---------DL---AEIR----SLAVSED----YRGQGIGRMLVEACLEEARE-LG 98 (152)
T ss_pred EEEEEEC---CEEEEEEEEEeccC---------Cc---eEEE----EEEECHH----HcCCCHHHHHHHHHHHHHHh-CC
Confidence 4555554 78999999975420 11 1232 1336766 99999999999999999998 49
Q ss_pred CcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
+.++.+.. .+.+||+|+||+..+.
T Consensus 99 ~~~i~~~~--~~~~~Y~k~GF~~~~~ 122 (152)
T PRK07757 99 VKRVFALT--YQPEFFEKLGFREVDK 122 (152)
T ss_pred CCeEEEEe--CcHHHHHHCCCEEccc
Confidence 99885543 4579999999999764
No 150
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.41 E-value=1.2e-06 Score=98.26 Aligned_cols=98 Identities=13% Similarity=0.154 Sum_probs=67.5
Q ss_pred CeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHh
Q 008466 449 GWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG 528 (564)
Q Consensus 449 g~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~ 528 (564)
+..+|++.++ +++.+|||+.+.... ..+.....- .++. .+.|+++ |||+|||++||+++++++++
T Consensus 122 ~~~~~vA~~~-~~g~IVG~~~~~~~~-----~~~~d~~~~-~~i~----~l~V~P~----~Rg~GIG~~Ll~~l~e~a~~ 186 (547)
T TIGR03103 122 AITYLVAEDE-ASGAIIGTVMGVDHR-----KAFNDPEHG-SSLW----CLAVDPQ----AAHPGVGEALVRALAEHFQS 186 (547)
T ss_pred CceEEEEEEC-CCCeEEEEEEEEecc-----ccccCCCCC-eEEE----EEEECHH----HcCCCHHHHHHHHHHHHHHH
Confidence 3456666543 457899999764211 111110100 1122 1337776 99999999999999999999
Q ss_pred cCCCcEEEEe---cCCCcHHHHhhCCCeeeCceEeee
Q 008466 529 EHRSRKMAVI---SGVGTRHYYRKLGYELEGPYMVKY 562 (564)
Q Consensus 529 ~~g~~~i~~~---s~~~a~~fY~klGy~~~g~~m~K~ 562 (564)
.|+.+|.+. +|..|.+||+|+||+..+.|..+.
T Consensus 187 -~G~~~i~L~V~~~N~~Ai~fY~klGf~~~~~y~~~d 222 (547)
T TIGR03103 187 -RGCAYMDLSVMHDNEQAIALYEKLGFRRIPVFALKR 222 (547)
T ss_pred -CCCCEEEEEEcCCCHHHHHHHHHCCCEEeeEEEEec
Confidence 599998653 567899999999999988877653
No 151
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=98.41 E-value=1.3e-06 Score=81.94 Aligned_cols=85 Identities=14% Similarity=0.144 Sum_probs=59.9
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
.++... +++.+|||+.+...... . . +.+...+.|.++ |||+|||++||+.++++|+. .+
T Consensus 41 ~~v~~~--~~~~ivG~~~~~~~~~~------~------~--~~~i~~l~V~p~----~rg~GiG~~L~~~l~~~a~~-~~ 99 (157)
T TIGR02406 41 SIVAES--EGGEIVGFVSGYLRPDR------P------D--VLFVWQVAVDPR----ARGKGLARRLLEALLERVAC-ER 99 (157)
T ss_pred EEEEEc--CCCeEEEEEEEEecCCC------C------C--eEEEEEEEEChH----hccCcHHHHHHHHHHHHHHh-CC
Confidence 455443 23689999876432200 0 0 122223447777 99999999999999999998 48
Q ss_pred CcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
..+|.+. +|..|+.||+|+||+..+.
T Consensus 100 ~~~i~~~v~~~N~~a~~ly~k~G~~~~~~ 128 (157)
T TIGR02406 100 VRHLETTITPDNQASRALFKALARRRGVH 128 (157)
T ss_pred CCEEEEEEcCCCHHHHHHHHHhCcccCCC
Confidence 8888654 5778899999999987654
No 152
>PRK13688 hypothetical protein; Provisional
Probab=98.40 E-value=1.8e-06 Score=81.18 Aligned_cols=91 Identities=24% Similarity=0.289 Sum_probs=57.4
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
.+..+|+.+++ +.+||++.+.... .....-+.... -.-++| .+.|+++ |||||||++||+.+ +
T Consensus 43 ~~~~~~~~~~~---~~~VG~~~l~~~d-g~~~~~~~~~~-~~~~L~----~l~V~p~----~rgkGiG~~Ll~~a----~ 105 (156)
T PRK13688 43 SESPFYGIYYG---DSLVARMSLYKKG-GVEEPYFEDTQ-DYLELW----KLEVLPK----YQNRGYGEMLVDFA----K 105 (156)
T ss_pred CCCCEEEEEEC---CEEEEEEEEEecC-CcccccccCCC-CeEEEE----EEEECHH----HcCCCHHHHHHHHH----H
Confidence 45667777776 7889999886432 11111111000 011233 1236766 99999999999865 4
Q ss_pred hcCCCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 528 GEHRSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 528 ~~~g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
+. ++. +.+.++..|.+||+|+||+..+.
T Consensus 106 ~~-~~~-~~~~~~~~a~~FY~k~GF~~~~~ 133 (156)
T PRK13688 106 SF-QLP-IKTIARNKSKDFWLKLGFTPVEY 133 (156)
T ss_pred Hh-CCe-EEEEeccchHHHHHhCCCEEeEE
Confidence 42 443 55666778999999999988764
No 153
>PLN02825 amino-acid N-acetyltransferase
Probab=98.38 E-value=1.9e-06 Score=95.25 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=61.1
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeee-eecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELH-VYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relh-vyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
+++..+| +.+||++.+..-. . .. .-|++ +| |+++ |||+|+|++||+++|++|++ +
T Consensus 409 f~V~e~D---g~IVG~aal~~~~-~-------~~---~aEI~~la-----V~P~----yRGkGiG~~LL~~le~~Ar~-~ 464 (515)
T PLN02825 409 FVVVERE---GSIIACAALFPFF-E-------EK---CGEVAAIA-----VSPE----CRGQGQGDKLLDYIEKKAAS-L 464 (515)
T ss_pred EEEEEEC---CEEEEEEEEEeec-C-------CC---cEEEEEEE-----ECHH----HcCCCHHHHHHHHHHHHHHH-C
Confidence 4555555 7899999875211 1 01 12444 44 8877 99999999999999999999 5
Q ss_pred CCcEEEEecCCCcHHHHhhCCCeeeC
Q 008466 531 RSRKMAVISGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 531 g~~~i~~~s~~~a~~fY~klGy~~~g 556 (564)
|+++|.+.+ ..+.+||+|+||+..+
T Consensus 465 G~~~L~Llt-t~a~~fY~k~GF~~~~ 489 (515)
T PLN02825 465 GLEKLFLLT-TRTADWFVRRGFSECS 489 (515)
T ss_pred CCCEEEEEe-CcHHHHHHHCCCEEeC
Confidence 999997765 5689999999999977
No 154
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.37 E-value=0.00012 Score=77.16 Aligned_cols=156 Identities=13% Similarity=0.077 Sum_probs=99.8
Q ss_pred EEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCe
Q 008466 182 VEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTR 259 (564)
Q Consensus 182 ve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~r 259 (564)
+..| ||| |.|+ ++.+.+.+.++.+.+... +. -....+||+|+- +.+. +..+.+..-..
T Consensus 149 i~nIvfmGmGEPL-~N~d~vi~al~~l~~~~g--~~--------------~s~r~ItVsT~G--~~~~-i~~l~~~~~~~ 208 (345)
T PRK14466 149 LTNLVFMGMGEPL-DNLDEVLKALEILTAPYG--YG--------------WSPKRITVSTVG--LKKG-LKRFLEESECH 208 (345)
T ss_pred CCeEEEeeeCcCc-ccHHHHHHHHHHHhhccc--cC--------------cCCceEEEEcCC--CchH-HHHHhhccCcE
Confidence 5555 899 9998 455554444554433211 00 122478999865 2222 33333323357
Q ss_pred EEEccCCCCHHHHHhcCC---CCCHHHHHHHHHHHHH-cCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEE
Q 008466 260 LEIGVQSTYEDVARDTNR---GHTVAAVADCFCLAKD-AGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRADGLK 333 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i~R---ght~~~~~~ai~~lr~-~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~ 333 (564)
+.+.+-|.+++..+.+.+ .++.+++.++++...+ .|=++. .-||-|+ +++.++..+-.+.+. .+ +.+|.
T Consensus 209 LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gv-ND~~e~a~~L~~ll~---~~-~~~VN 283 (345)
T PRK14466 209 LAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGL-NDSLKHAKELVKLLR---GI-DCRVN 283 (345)
T ss_pred EEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCC-CCCHHHHHHHHHHHc---CC-CceEE
Confidence 889999999999998775 4788999999988544 333444 5677777 888887766665553 33 47899
Q ss_pred EeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 008466 334 IYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILA 371 (564)
Q Consensus 334 iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~ 371 (564)
+.|+.+.+|.+ |++++.+...+....+..
T Consensus 284 LIp~Np~~~~~---------~~~~s~~~~~~F~~~L~~ 312 (345)
T PRK14466 284 LIRFHAIPGVD---------LEGSDMARMEAFRDYLTS 312 (345)
T ss_pred EEecCCCCCCC---------CcCCCHHHHHHHHHHHHH
Confidence 99999888853 566777665555443333
No 155
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=98.34 E-value=2.1e-06 Score=82.18 Aligned_cols=84 Identities=25% Similarity=0.345 Sum_probs=62.3
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
.|+...+ +.+||++.+..... .. .. -+++.+ |.+. |||+|+|+++++.+.+++.++.|
T Consensus 59 ~~~i~~~---g~~iG~~~~~~~~~------~~-~~---~~~~~~-----v~~~----~~g~G~g~~l~~~l~~~~~~~~~ 116 (186)
T PRK15130 59 RFVVECD---GEKAGLVELVEINH------VH-RR---AEFQII-----ISPE----YQGKGLATRAAKLAMDYGFTVLN 116 (186)
T ss_pred EEEEEEC---CEEEEEEEEEeecC------CC-Ce---EEEEEE-----ECHH----HcCCCHHHHHHHHHHHHHhhcCC
Confidence 4555543 78999998864320 11 11 134443 6655 99999999999999999987579
Q ss_pred CcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
..+|.+. +|..+++||+|+||+.+|.
T Consensus 117 ~~rv~~~v~~~N~~s~~~yek~GF~~~~~ 145 (186)
T PRK15130 117 LYKLYLIVDKENEKAIHIYRKLGFEVEGE 145 (186)
T ss_pred ceEEEEEEccCCHHHHHHHHHCCCEEEEE
Confidence 9998654 5778999999999999874
No 156
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=98.33 E-value=2e-06 Score=97.91 Aligned_cols=83 Identities=17% Similarity=0.201 Sum_probs=62.6
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.+|+..++ +.+|||+.+.... .+. -++| .+.|+++ |||||||++||++++++|++ .
T Consensus 504 ~~~Va~~~---g~IVG~~~l~~~~---------~~~---~~I~----~i~V~P~----~rGkGIGk~Ll~~l~~~ak~-~ 559 (614)
T PRK12308 504 SFAVAEHH---GEVTGCASLYIYD---------SGL---AEIR----SLGVEAG----WQVQGQGSALVQYLVEKARQ-M 559 (614)
T ss_pred cEEEEEEC---CEEEEEEEEEEcC---------CCe---EEEE----EEEECHH----HcCCCHHHHHHHHHHHHHHH-C
Confidence 45666555 7899999987542 011 1233 1237777 99999999999999999999 5
Q ss_pred CCcEEEEecCCCcHHHHhhCCCeeeCceE
Q 008466 531 RSRKMAVISGVGTRHYYRKLGYELEGPYM 559 (564)
Q Consensus 531 g~~~i~~~s~~~a~~fY~klGy~~~g~~m 559 (564)
|+++|.+.+ .+..||+|+||+..+..+
T Consensus 560 g~~~i~l~~--~a~~FYek~GF~~~~~~~ 586 (614)
T PRK12308 560 AIKKVFVLT--RVPEFFMKQGFSPTSKSL 586 (614)
T ss_pred CCCEEEEee--CcHHHHHHCCCEECCccc
Confidence 999987754 468999999999988544
No 157
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=98.32 E-value=1.6e-06 Score=79.52 Aligned_cols=73 Identities=15% Similarity=0.143 Sum_probs=55.8
Q ss_pred CeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe---
Q 008466 462 DILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI--- 538 (564)
Q Consensus 462 ~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~--- 538 (564)
+.+||++.+.... +.. ...++ .|+++ |||+|+|+.||+.+++++++ .|+.++.+.
T Consensus 49 ~~~vG~~~~~~~~----------~~~--~~~~i-----~v~~~----~rg~G~g~~ll~~~~~~~~~-~~~~~~~~~~~~ 106 (146)
T PRK09491 49 GQMAAFAITQVVL----------DEA--TLFNI-----AVDPD----YQRQGLGRALLEHLIDELEK-RGVATLWLEVRA 106 (146)
T ss_pred CeEEEEEEEEeec----------Cce--EEEEE-----EECHH----HccCCHHHHHHHHHHHHHHH-CCCcEEEEEEcc
Confidence 7889999886432 111 11122 26665 99999999999999999988 599987653
Q ss_pred cCCCcHHHHhhCCCeeeC
Q 008466 539 SGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 539 s~~~a~~fY~klGy~~~g 556 (564)
.|..+..||+|+||+..+
T Consensus 107 ~N~~a~~~y~k~Gf~~~~ 124 (146)
T PRK09491 107 SNAAAIALYESLGFNEVT 124 (146)
T ss_pred CCHHHHHHHHHcCCEEee
Confidence 467889999999999877
No 158
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=98.32 E-value=5.5e-05 Score=80.73 Aligned_cols=131 Identities=8% Similarity=-0.009 Sum_probs=92.1
Q ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEE
Q 008466 182 VEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLE 261 (564)
Q Consensus 182 ve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvs 261 (564)
+...|.||.|+..|.+.+.++++.+++.-.. ...+.+++.|+-..++++.++.|.+.|+ .|+
T Consensus 59 ~~i~~~GGEPll~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~i~TNG~ll~~~~~~~l~~~~~-~v~ 120 (370)
T PRK13758 59 CSFAFQGGEPTLAGLEFFEELMELQRKHNYK-----------------NLKIYNSLQTNGTLIDESWAKFLSENKF-LVG 120 (370)
T ss_pred eEEEEECCccccCChHHHHHHHHHHHHhccC-----------------CCeEEEEEEecCEecCHHHHHHHHHcCc-eEE
Confidence 3444889999999877777777776653210 1124578999999899999999999997 899
Q ss_pred EccCCCCHHHHHhcCC----CCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEee
Q 008466 262 IGVQSTYEDVARDTNR----GHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYP 336 (564)
Q Consensus 262 iGvQS~~d~vL~~i~R----ght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~ 336 (564)
|.+.+. +++.+.+.+ ..+.+.+.++++.+++.|+++.+-+.+.- .+.+++.+.++.+. .++++.+.+.+
T Consensus 121 iSlDg~-~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~~~~~~i~~~v~~--~n~~~l~~i~~~~~---~~g~~~~~~~~ 193 (370)
T PRK13758 121 LSMDGP-KEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNILCVVTS--NTARHVNKIYKYFK---EKDFKFLQFIN 193 (370)
T ss_pred EeecCC-HHHhccccCCCCCCccHHHHHHHHHHHHHhCCCceEEEEecc--ccccCHHHHHHHHH---HcCCCeEeeee
Confidence 999997 556555542 45789999999999999988766555542 24444444555544 35667665544
No 159
>PRK05279 N-acetylglutamate synthase; Validated
Probab=98.32 E-value=2.4e-06 Score=93.51 Aligned_cols=82 Identities=20% Similarity=0.282 Sum_probs=60.7
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
+|+.++| +.+||++.+..... . .. -+++ .+.|+++ |||+|+|++||++++++|++ +|
T Consensus 336 ~~va~~d---g~iVG~~~~~~~~~-~-------~~---~~I~----~l~V~p~----~Rg~GiG~~Ll~~l~~~a~~-~g 392 (441)
T PRK05279 336 FTVIERD---GLIIGCAALYPFPE-E-------KM---GEMA----CLAVHPD----YRGSGRGERLLKRIEQRARQ-LG 392 (441)
T ss_pred EEEEEEC---CEEEEEEEEEEcCC-C-------Ce---EEEE----EEEECHH----HcCCCHHHHHHHHHHHHHHH-cC
Confidence 4555544 78999998764321 0 01 1222 1337776 99999999999999999999 59
Q ss_pred CcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
+..+.+.+ ..|.+||+|+||+..|.
T Consensus 393 ~~~l~l~~-~~a~~fY~k~GF~~~g~ 417 (441)
T PRK05279 393 LKRLFVLT-TRTAHWFLERGFVPVDV 417 (441)
T ss_pred CCEEEEec-chHHHHHHHCcCEECCh
Confidence 99987654 56899999999999874
No 160
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.32 E-value=1.4e-06 Score=89.44 Aligned_cols=86 Identities=21% Similarity=0.260 Sum_probs=61.4
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
+|+++++ .++.+|||+.+...... + ...++|. +.|+++ |||||||+.||..+.+++++ .|
T Consensus 200 ~~~a~~~-~~~~~vG~~~~~~~~~~---~---------~~~~i~~--~~V~p~----~rg~GiG~~ll~~~~~~~~~-~g 259 (292)
T TIGR03448 200 LFLAFDD-APGELLGFHWTKVHPDE---P---------ALGEVYV--VGVDPA----AQGRGLGDALTLIGLHHLAA-RG 259 (292)
T ss_pred eEEEEEC-CCCcEEEEEEEEecCCC---C---------ceeEEEE--EEECHH----HcCCCHHHHHHHHHHHHHHH-CC
Confidence 4666653 34778999765533200 0 0123332 356776 99999999999999999999 49
Q ss_pred CcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
+.++.+. .|..|..||+|+||+..+.
T Consensus 260 ~~~v~l~v~~~N~~a~~~y~k~GF~~~~~ 288 (292)
T TIGR03448 260 LPAVMLYVEADNEAAVRTYEKLGFTVAEV 288 (292)
T ss_pred CCEEEEEEeCCCHHHHHHHHHcCCEEccc
Confidence 9987654 3667899999999998764
No 161
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=98.31 E-value=2.4e-06 Score=80.44 Aligned_cols=78 Identities=26% Similarity=0.340 Sum_probs=57.0
Q ss_pred eEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCC-cEEEEe---
Q 008466 463 ILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRS-RKMAVI--- 538 (564)
Q Consensus 463 ~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~-~~i~~~--- 538 (564)
.++||+........++. ..+.|+ ..+.|+++ |||+|||++||+++++.+++. |. ..+.+.
T Consensus 72 ~~~G~~~~~~~~~~~~~---------~~~~~i--~~iaV~p~----~r~~Gig~~Ll~~~~~~~~~~-~~~~~~~L~V~~ 135 (177)
T COG0456 72 KVVGFLLVRVVDGRPSA---------DHEGHI--YNLAVDPE----YRGRGIGRALLDEALERLRER-GLADKIVLEVRE 135 (177)
T ss_pred ceeEEEEEEEecCCccc---------cCccEE--EEEEEChH----hhcCCHHHHHHHHHHHHHHhc-CCCceEEEEEec
Confidence 47999998743211111 123343 35566776 999999999999999999984 76 666443
Q ss_pred cCCCcHHHHhhCCCeeeC
Q 008466 539 SGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 539 s~~~a~~fY~klGy~~~g 556 (564)
+|..|..||+|+||+..+
T Consensus 136 ~N~~Ai~lY~~~GF~~~~ 153 (177)
T COG0456 136 SNEAAIGLYRKLGFEVVK 153 (177)
T ss_pred CChHHHHHHHHcCCEEEe
Confidence 688899999999999865
No 162
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=98.28 E-value=2e-06 Score=78.30 Aligned_cols=90 Identities=22% Similarity=0.270 Sum_probs=68.3
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
+.+-|++-+.. ++.|++++||-.+...... -+-|.++ |+.+ +||+|+|++||+.|-+.+.
T Consensus 47 ~~~~Hl~~~~~--~g~LvAyaRLl~~~~~~~~-------------~~iGRV~-v~~~----~RG~glG~~Lm~~AL~~~~ 106 (155)
T COG2153 47 GDTRHLLGWTP--DGELVAYARLLPPGAEYEE-------------VSIGRVI-VSPA----ARGQGLGQQLMEKALETAG 106 (155)
T ss_pred cccceEEEEcC--CCeEEEEEecCCCCCCcCc-------------eeeeeEE-ECHh----hhccchhHHHHHHHHHHHH
Confidence 34567777772 3899999999755411100 1234444 6665 9999999999999999999
Q ss_pred hcCCCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 528 GEHRSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 528 ~~~g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
+.+--+.+.+.+|...+.||.+.||...+.
T Consensus 107 ~~~p~~~v~l~AQahLq~fYa~~GFv~~~e 136 (155)
T COG2153 107 REWPDKPVYLGAQAHLQDFYASFGFVRVGE 136 (155)
T ss_pred hhCCCCCeEEehHHHHHHHHHHhCcEEcCc
Confidence 864456689999999999999999999884
No 163
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=98.25 E-value=4.3e-06 Score=91.19 Aligned_cols=81 Identities=21% Similarity=0.323 Sum_probs=60.7
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeee-eecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELH-VYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relh-vyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
+++.+++ +.++|++.+.... .. .. -+++ +| |+++ |||+|+|++||++++++|++ +
T Consensus 324 ~~V~~~d---g~iVG~~~~~~~~-~~-------~~---~~I~~l~-----V~p~----~Rg~GiG~~Ll~~l~~~A~~-~ 379 (429)
T TIGR01890 324 FSIIEHD---GNIIGCAALYPYA-EE-------DC---GEMACLA-----VSPE----YQDGGRGERLLAHIEDRARQ-M 379 (429)
T ss_pred EEEEEEC---CEEEEEEEEEecC-CC-------Ce---EEEEEEE-----ECHH----HcCCCHHHHHHHHHHHHHHH-c
Confidence 3555444 7899999987532 10 01 2333 33 7777 99999999999999999999 5
Q ss_pred CCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 531 RSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 531 g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
|+.++.+.+ ..+.+||+|+||+..|.
T Consensus 380 G~~~l~v~~-~~a~~fY~k~GF~~~g~ 405 (429)
T TIGR01890 380 GISRLFVLT-TRTGHWFRERGFQTASV 405 (429)
T ss_pred CCCEEEEee-cchHHHHHHCCCEECCh
Confidence 999986654 35789999999999874
No 164
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=98.24 E-value=4.5e-06 Score=79.27 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=61.3
Q ss_pred EEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCC
Q 008466 453 FLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRS 532 (564)
Q Consensus 453 fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~ 532 (564)
-+|++-.+++.+||.+++.--. +.+ --...+..|... |... |||||||++||..+++.|+.. |+
T Consensus 46 ~LslVA~d~g~vvG~Il~s~v~-------~~g---~~~~~~~LaPLa-V~p~----~qg~GIG~~Lvr~~le~a~~~-G~ 109 (171)
T COG3153 46 TLSLVAEDDGEVVGHILFSPVT-------VGG---EELGWLGLAPLA-VDPE----YQGQGIGSALVREGLEALRLA-GA 109 (171)
T ss_pred ceeEEEeeCCEEEEEEEEeEEE-------ecC---cccceEEEEeEE-Echh----hcCCcHHHHHHHHHHHHHHHC-CC
Confidence 3444444448899999986322 111 012234433332 5555 999999999999999999994 99
Q ss_pred cEEEEecCCCcHHHHhhCCCeeeC
Q 008466 533 RKMAVISGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 533 ~~i~~~s~~~a~~fY~klGy~~~g 556 (564)
..+.+ .+...||.|+||+...
T Consensus 110 ~~v~v---lGdp~YY~rfGF~~~~ 130 (171)
T COG3153 110 SAVVV---LGDPTYYSRFGFEPAA 130 (171)
T ss_pred CEEEE---ecCcccccccCcEEcc
Confidence 99988 7889999999999865
No 165
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=98.23 E-value=4.2e-05 Score=79.63 Aligned_cols=163 Identities=17% Similarity=0.206 Sum_probs=115.3
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe-----eCCCCCHHHHHHHHHcC-
Q 008466 183 EFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET-----RPDYCLGPHLRQMLSYG- 256 (564)
Q Consensus 183 e~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt-----rPd~i~~e~L~~L~~~G- 256 (564)
+.|+.||.|.+++...++++++.|.+ + +.+..+.|.| .|..+|++.++.|.+.+
T Consensus 161 eVllSGGDPL~ls~~~L~~ll~~L~~-I-------------------pHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~ 220 (369)
T COG1509 161 EVLLSGGDPLSLSDKKLEWLLKRLRA-I-------------------PHVKIIRIGTRLPVVLPQRITDELCEILGKSRK 220 (369)
T ss_pred eEEecCCCccccCHHHHHHHHHHHhc-C-------------------CceeEEEeecccceechhhccHHHHHHHhccCc
Confidence 56689999999999999999999874 2 3445667765 57788988888888854
Q ss_pred CCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEE
Q 008466 257 CTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRADGLKI 334 (564)
Q Consensus 257 ~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~i 334 (564)
-.++..=+.+.++= -.++.+|+++++++|+.+. +-|+-|. +++++.+.+-++.++. .++-=--+
T Consensus 221 ~v~~~tH~NHp~Ei----------t~e~~~A~~~L~~aGv~l~NQsVLLrGV-ND~~evl~~L~~~L~~---~gV~PYYl 286 (369)
T COG1509 221 PVWLVTHFNHPNEI----------TPEAREACAKLRDAGVPLLNQSVLLRGV-NDDPEVLKELSRALFD---AGVKPYYL 286 (369)
T ss_pred eEEEEcccCChhhc----------CHHHHHHHHHHHHcCceeecchheeccc-CCCHHHHHHHHHHHHH---cCCcceEE
Confidence 23443333222211 1578899999999999865 4688888 8899887777777774 33333345
Q ss_pred eeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChh
Q 008466 335 YPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMP 389 (564)
Q Consensus 335 y~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~ 389 (564)
|.+-+.+|+.=+ . .+.++..+++......++-+..- ....|+|..
T Consensus 287 ~~~D~~~G~~hf--------r-~~i~~~~~i~~~lr~~~SG~~~P-~~v~d~pgg 331 (369)
T COG1509 287 HQLDLVQGAAHF--------R-VPIAEGLQIVEELRGRTSGYAVP-TLVVDIPGG 331 (369)
T ss_pred eccCccCCccce--------e-ccHHHHHHHHHHHHHhCCCcccc-eeEEecCCC
Confidence 677778887532 2 67888999999888888654332 256676653
No 166
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.23 E-value=1.2e-06 Score=78.65 Aligned_cols=101 Identities=21% Similarity=0.269 Sum_probs=77.6
Q ss_pred eeCCCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecc--cccccCCCchhhhhcCHHHHHHHHH
Q 008466 445 VANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGT--AVPVHGREADKLQHQGYGTLLMEEA 522 (564)
Q Consensus 445 ~a~gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~--~~~v~~~~~~~~q~~GiG~~Lm~~a 522 (564)
..++.|-+.+--||.+.+.+||.-.|-+-- - ++|+.-.-|- .|-|+.+ +||+++|+.|++.+
T Consensus 47 k~~~~~Y~i~Vied~~s~~vigtatL~IE~--K----------fIh~~g~rGhiEDVVV~~~----~rgk~LGkllv~~L 110 (150)
T KOG3396|consen 47 KKSGDWYYIVVIEDKESEKVIGTATLFIER--K----------FIHGCGSRGHIEDVVVDSE----YRGKQLGKLLVETL 110 (150)
T ss_pred HhcCCcEEEEEEEeCCcCeEEEEEEEEEeh--h----------hhhcccccCceeEEEeChh----hhhhHHhHHHHHHH
Confidence 445666667778998889999998887542 1 1122111121 2335655 99999999999999
Q ss_pred HHHHHhcCCCcEEEEecCCCcHHHHhhCCCeeeCceEeee
Q 008466 523 ERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKY 562 (564)
Q Consensus 523 E~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~~g~~m~K~ 562 (564)
-.+|+. .|+=++.+.-...-.+||+|+||...+.+|.+.
T Consensus 111 v~l~k~-lgcYKi~LdC~~~nv~FYeKcG~s~~~~~M~~r 149 (150)
T KOG3396|consen 111 VDLAKS-LGCYKIILDCDPKNVKFYEKCGYSNAGNEMTKR 149 (150)
T ss_pred HHHHHh-cCcEEEEEecchhhhhHHHHcCccccchhheec
Confidence 999999 699999998888889999999999999999875
No 167
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=98.23 E-value=1.4e-05 Score=81.71 Aligned_cols=121 Identities=16% Similarity=0.200 Sum_probs=96.2
Q ss_pred EEEEEE--eeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCC----CCCHHHHHHHHHHHHHc-C-CcEEEEEec
Q 008466 233 IGMTIE--TRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNR----GHTVAAVADCFCLAKDA-G-FKVVAHMMP 304 (564)
Q Consensus 233 ~eitiE--trPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~R----ght~~~~~~ai~~lr~~-G-~~v~~~lI~ 304 (564)
.++|+. .++-+. .+++..++++|...+++++..++.++++.+.| .|+.+...+.+..+-++ | -.+.+|+|+
T Consensus 117 ~~itiseci~~~~~-~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~~~~k~rv~ihliV 195 (339)
T COG2516 117 DPITISECITAVSL-KEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAEAFGKGRVGIHLIV 195 (339)
T ss_pred Cceehhhhhhcccc-hHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhccCCcceeEEe
Confidence 456666 566555 89999999999999999999999999998844 38899999999998886 3 347899999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHH
Q 008466 305 DLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDI 365 (564)
Q Consensus 305 GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~ 365 (564)
|+ |++..++.+++..+-. .--.++++.+.|.+||.+.+ ..+++.+.+-++
T Consensus 196 gl-GesD~~~ve~~~~v~~----~g~~v~Lfaf~P~~gt~me~------r~~~pve~Yrk~ 245 (339)
T COG2516 196 GL-GESDKDIVETIKRVRK----RGGIVSLFAFTPLKGTQMEN------RKPPPVERYRKI 245 (339)
T ss_pred cc-CCchHHHHHHHHHHHh----cCceEEEEEecccccccccC------CCCCcHHHHHHH
Confidence 97 8888889999888753 23567888899999998864 345666666544
No 168
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=98.22 E-value=6.2e-06 Score=76.05 Aligned_cols=83 Identities=18% Similarity=0.262 Sum_probs=59.4
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
+|+..++ +.+||++.+...... . -..++-+| +.. .+| +|||+.+|+.++++|.+++|
T Consensus 53 ~~~~~~~---g~~vG~~~~~~~~~~------~----~~~~~g~~-----~~~----~~~-~G~g~~~~~~~~~~a~~~~~ 109 (156)
T TIGR03585 53 YWIVCQE---SRPIGVISFTDINLV------H----KSAFWGIY-----ANP----FCK-PGVGSVLEEAALEYAFEHLG 109 (156)
T ss_pred EEEEEEC---CEEEEEEEEEecChh------h----CeEEEEEE-----eCh----hhh-cCchHHHHHHHHHHHHhhCC
Confidence 4555443 889999999744210 0 01122222 333 388 99999999999999987569
Q ss_pred CcEEEE---ecCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAV---ISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~---~s~~~a~~fY~klGy~~~g~ 557 (564)
+++|.+ ..|..+++||+|+||+.+|.
T Consensus 110 ~~~i~~~v~~~N~~s~~~y~k~Gf~~~g~ 138 (156)
T TIGR03585 110 LHKLSLEVLEFNNKALKLYEKFGFEREGV 138 (156)
T ss_pred eeEEEEEEeccCHHHHHHHHHcCCeEeee
Confidence 999864 35778999999999999884
No 169
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=98.21 E-value=7.1e-05 Score=77.57 Aligned_cols=141 Identities=15% Similarity=0.075 Sum_probs=105.3
Q ss_pred cEEEEEE-cCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCC--CHHHHHHHHHcCC
Q 008466 181 KVEFILM-GGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYC--LGPHLRQMLSYGC 257 (564)
Q Consensus 181 kve~I~~-GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i--~~e~L~~L~~~G~ 257 (564)
+...|.+ .-|-...|.+...++.+.+.+.+.. ....++|.|.-+-+ +-+.|..|+.-+-
T Consensus 82 k~~~i~is~~TDpyqp~E~~~~ltR~ilei~~~------------------~~~~v~I~TKS~lv~RDld~l~~~~~~~~ 143 (297)
T COG1533 82 KRTVIAISSVTDPYQPIEKEYRLTRKILEILLK------------------YGFPVSIVTKSALVLRDLDLLLELAERGK 143 (297)
T ss_pred CceEEEEecCCCCCCcchHHHHHHHHHHHHHHH------------------cCCcEEEEECCcchhhhHHHHHhhhhccc
Confidence 3556654 4566677777777888888776642 23468888866522 4456666667777
Q ss_pred CeEEEccCCCCHHHHHhcCCC-CCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEee
Q 008466 258 TRLEIGVQSTYEDVARDTNRG-HTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYP 336 (564)
Q Consensus 258 ~rvsiGvQS~~d~vL~~i~Rg-ht~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~ 336 (564)
.+|.+-+-|.++++.+.+--+ -+.++-++|++.+.++|+++.+.+-+=+|+.+.+++.+.+....+ .++.++....
T Consensus 144 v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaGi~~~v~v~PIiP~~~d~e~e~~l~~~~~---ag~~~v~~~~ 220 (297)
T COG1533 144 VRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAGIPVGLFVAPIIPGLNDEELERILEAAAE---AGARVVVYGT 220 (297)
T ss_pred eEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHCCCeEEEEEecccCCCChHHHHHHHHHHHH---cCCCeeEeee
Confidence 899999999988898988865 478999999999999999999999999999998888888877763 4567765555
Q ss_pred eeecCC
Q 008466 337 TLVIRG 342 (564)
Q Consensus 337 l~v~~G 342 (564)
+.+..+
T Consensus 221 l~~~~~ 226 (297)
T COG1533 221 LRLRLD 226 (297)
T ss_pred eeccHH
Confidence 544443
No 170
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=98.21 E-value=5.9e-06 Score=79.68 Aligned_cols=89 Identities=16% Similarity=0.203 Sum_probs=62.1
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.+....++.+++.+||.+.+...... ..-.-|+.. .|.+. |||||+|+.+++.+.++|.+.+
T Consensus 75 ~~~~~i~~~~~~~~iG~i~l~~~~~~---------~~~~~eig~-----~i~~~----~~G~G~~~ea~~~ll~~~~~~l 136 (194)
T PRK10809 75 AFYFALLDPDEKEIIGVANFSNVVRG---------SFHACYLGY-----SLGQK----WQGQGLMFEALQAAIRYMQRQQ 136 (194)
T ss_pred EEEEEEEECCCCeEEEEEEEEeecCC---------CeeeEEEEE-----EECHH----HcCCCHHHHHHHHHHHHHHhcC
Confidence 33334444445789999998743200 000112222 25554 9999999999999999998756
Q ss_pred CCcEEEEe---cCCCcHHHHhhCCCeeeCc
Q 008466 531 RSRKMAVI---SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 531 g~~~i~~~---s~~~a~~fY~klGy~~~g~ 557 (564)
|+++|.+. .|..++++|+|+||+.+|.
T Consensus 137 ~l~~i~~~v~~~N~~S~~l~ek~Gf~~~g~ 166 (194)
T PRK10809 137 HMHRIMANYMPHNKRSGDLLARLGFEKEGY 166 (194)
T ss_pred CceEEEEEeeCCCHHHHHHHHHCCCcEEee
Confidence 99998543 4778999999999998873
No 171
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.19 E-value=0.00024 Score=75.43 Aligned_cols=149 Identities=11% Similarity=0.113 Sum_probs=102.0
Q ss_pred EEEE-cCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCC-CeEE
Q 008466 184 FILM-GGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGC-TRLE 261 (564)
Q Consensus 184 ~I~~-GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~-~rvs 261 (564)
.+|| ||.| .+..+.+.++++.+.+.-.-++ .-..+||+|.-- . +.++.|.+.+. ..+.
T Consensus 164 vVfmGmGEP-L~N~d~v~~~l~~l~~~~Gl~~----------------~~r~itVsTsG~--~-~~i~~L~~~dl~v~La 223 (356)
T PRK14462 164 IVYMGMGEP-LDNLDNVSKAIKIFSENDGLAI----------------SPRRQTISTSGL--A-SKIKKLGEMNLGVQLA 223 (356)
T ss_pred eEEeCCccc-ccCHHHHHHHHHHhcCccCCCc----------------CCCceEEECCCC--h-HHHHHHHhcCCCeEEE
Confidence 3477 6666 5567777777777765311001 112578888542 1 46777777765 6788
Q ss_pred EccCCCCHHHHHhc---CCCCCHHHHHHHHH-HHHHcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEe
Q 008466 262 IGVQSTYEDVARDT---NRGHTVAAVADCFC-LAKDAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRADGLKIY 335 (564)
Q Consensus 262 iGvQS~~d~vL~~i---~Rght~~~~~~ai~-~lr~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy 335 (564)
+.+-+.+++..+.+ ++.++.++++++++ .+++.|-++. .=+|.|+ +++.++..+.++.+- .+ +.+|.+.
T Consensus 224 iSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~Gv-NDs~e~a~~La~llk---~l-~~~VnLI 298 (356)
T PRK14462 224 ISLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDV-NDDLKSAKKLVKLLN---GI-KAKVNLI 298 (356)
T ss_pred EECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCC-CCCHHHHHHHHHHHh---hc-CcEEEEE
Confidence 88999999999966 56788899999887 4556777765 4688888 888887777666654 34 3588888
Q ss_pred eeeecCCChhHHHHHcCCCCCCCHHHHHHHH
Q 008466 336 PTLVIRGTGLYELWKTGRYRNYPPEQLVDIV 366 (564)
Q Consensus 336 ~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~ 366 (564)
|+.+.++.+ |++++.+.+.+..
T Consensus 299 Pyn~~~~~~---------~~~ps~e~i~~f~ 320 (356)
T PRK14462 299 LFNPHEGSK---------FERPSLEDMIKFQ 320 (356)
T ss_pred eCCCCCCCC---------CCCCCHHHHHHHH
Confidence 888777664 4667777655543
No 172
>PRK10514 putative acetyltransferase; Provisional
Probab=98.18 E-value=4.8e-06 Score=76.02 Aligned_cols=76 Identities=18% Similarity=0.360 Sum_probs=52.7
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
+|+..+ +++.+||++.+.-. + +. ++| |+++ |||+|||++||+++++.+..
T Consensus 51 ~~~~~~--~~~~~iG~~~~~~~-------~-------~~--~~~-----v~p~----~rgkGig~~Ll~~~~~~~~~--- 100 (145)
T PRK10514 51 LWVAVD--ERDQPVGFMLLSGG-------H-------ME--ALF-----VDPD----VRGCGVGRMLVEHALSLHPE--- 100 (145)
T ss_pred eEEEEe--cCCcEEEEEEEecC-------c-------Ee--EEE-----ECHH----hccCCHHHHHHHHHHHhccc---
Confidence 455543 23788999987510 0 11 233 6666 99999999999999987533
Q ss_pred CcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
+.-....+|..+.+||+|+||+..|.
T Consensus 101 i~~~v~~~N~~a~~~yek~Gf~~~~~ 126 (145)
T PRK10514 101 LTTDVNEQNEQAVGFYKKMGFKVTGR 126 (145)
T ss_pred cEEEeecCCHHHHHHHHHCCCEEecc
Confidence 22223345778999999999999874
No 173
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=98.18 E-value=0.0001 Score=77.14 Aligned_cols=130 Identities=13% Similarity=0.111 Sum_probs=93.1
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEE
Q 008466 183 EFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEI 262 (564)
Q Consensus 183 e~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsi 262 (564)
-.++.||.|+.. ..+..+++.+.+. ....+++.|+...++++.++.++++|+..|.+
T Consensus 68 ~v~~~gGEPll~--~d~~ei~~~~~~~---------------------~~~~~~~~TnG~~~~~~~~~~l~~~g~~~v~i 124 (347)
T COG0535 68 VVIFTGGEPLLR--PDLLEIVEYARKK---------------------GGIRVSLSTNGTLLTEEVLEKLKEAGLDYVSI 124 (347)
T ss_pred EEEEeCCCcccc--ccHHHHHHHHhhc---------------------CCeEEEEeCCCccCCHHHHHHHHhcCCcEEEE
Confidence 345789999887 3344444444322 12567888887667899999999999999999
Q ss_pred ccCCCCHHH-HHhcCCCCCHHHHHHHHHHHHHcCCcEEE-EEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeec
Q 008466 263 GVQSTYEDV-ARDTNRGHTVAAVADCFCLAKDAGFKVVA-HMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVI 340 (564)
Q Consensus 263 GvQS~~d~v-L~~i~Rght~~~~~~ai~~lr~~G~~v~~-~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~ 340 (564)
.+++.++++ ...-++....+.++++++.+++.|+.+.+ -.|. ..+.+++.+.++.+. .++.+.+.++++.+.
T Consensus 125 Sid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~~~~~~~v~---~~n~~~l~~~~~~~~---~~g~~~~~~~~~~~~ 198 (347)
T COG0535 125 SLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGILVVINTTVT---KINYDELPEIADLAA---ELGVDELNVFPLIPV 198 (347)
T ss_pred EecCCChhhhhhhcCCCcHHHHHHHHHHHHHHcCCeeeEEEEEe---cCcHHHHHHHHHHHH---HcCCCEEEEEEEeec
Confidence 999999999 44555567889999999999999997443 3444 344444445555554 356688888888765
Q ss_pred C
Q 008466 341 R 341 (564)
Q Consensus 341 ~ 341 (564)
.
T Consensus 199 g 199 (347)
T COG0535 199 G 199 (347)
T ss_pred c
Confidence 3
No 174
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=98.15 E-value=6.6e-05 Score=76.94 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=92.2
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccC
Q 008466 186 LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQ 265 (564)
Q Consensus 186 ~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQ 265 (564)
+.||.|. +-.+..-.+++.+++.|. ...-+-+.|.+...+++.++.|.++|.+-|-+-+-
T Consensus 84 iTGGdPl-~~ieR~~~~ir~LK~efG-------------------~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~ 143 (353)
T COG2108 84 ITGGDPL-LEIERTVEYIRLLKDEFG-------------------EDFHIHLYTTGILATEEALKALAEAGLDEIRFHPP 143 (353)
T ss_pred ccCCChH-HHHHHHHHHHHHHHHhhc-------------------cceeEEEeeccccCCHHHHHHHHhCCCCeEEecCC
Confidence 6788884 344555567777877774 23457788889999999999999999998888773
Q ss_pred CCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChh
Q 008466 266 STYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGL 345 (564)
Q Consensus 266 S~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L 345 (564)
..++ ...+.+++++..+++.|+.+.+- |+.+||+... +.+-++.+- ..+.+.+.+..|.+-.+. +
T Consensus 144 ~~~~---------~~~e~~i~~l~~A~~~g~dvG~E-iPaipg~e~~-i~e~~~~~~---~~~~~FlNiNELE~sE~N-~ 208 (353)
T COG2108 144 RPGS---------KSSEKYIENLKIAKKYGMDVGVE-IPAIPGEEEA-ILEFAKALD---ENGLDFLNINELEFSENN-Y 208 (353)
T ss_pred Cccc---------cccHHHHHHHHHHHHhCccceee-cCCCcchHHH-HHHHHHHHH---hcccceeeeeeeeeccch-H
Confidence 1111 12367889999999998876654 6888886533 444444443 466788999888876543 5
Q ss_pred HHHHHcC
Q 008466 346 YELWKTG 352 (564)
Q Consensus 346 ~~~~~~G 352 (564)
.++..+|
T Consensus 209 ~~l~~~g 215 (353)
T COG2108 209 ENLLERG 215 (353)
T ss_pred HHHHhcC
Confidence 5555554
No 175
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=98.14 E-value=9.2e-06 Score=75.03 Aligned_cols=96 Identities=15% Similarity=0.263 Sum_probs=66.0
Q ss_pred eCCCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHH
Q 008466 446 ANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERI 525 (564)
Q Consensus 446 a~gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~ 525 (564)
+..+...|+.+.| +.++||+.+--+... .+..+ -.+.+|.+ .+.++ +||+|+|+.+|..+.+.
T Consensus 44 ~~~~~~~~v~~~d---g~~~g~~~~~~~~~~---~~~~~---~~~~~~~~----~~~~~----~rg~G~g~~~~~~~~~~ 106 (152)
T PF13523_consen 44 ADPGHHPYVAEDD---GEPIGYFEIYWPDED---YDADD---GDRGIHRL----IVDPE----YRGQGLGKAMLRALIEF 106 (152)
T ss_dssp HTTTEEEEEEEET---TEEEEEEEEEEGGGS---S---T---TEEEEEEE----ESTGG----GTTSSHHHHHHHHHHHH
T ss_pred ccCCceEEEEEEC---CEEEEEEEEeccccc---ccCCC---CEEEEeee----eechh----hcCCCHHHHHHHHHHHH
Confidence 4566788999888 899999988544311 11121 12445533 13344 99999999999999999
Q ss_pred HHhcCCCcEEEEe---cCCCcHHHHhhCCCeeeCce
Q 008466 526 ALGEHRSRKMAVI---SGVGTRHYYRKLGYELEGPY 558 (564)
Q Consensus 526 A~~~~g~~~i~~~---s~~~a~~fY~klGy~~~g~~ 558 (564)
+.+..++.+|.+. .|..+.++|+|+||+.+|.+
T Consensus 107 ~~~~~~~~~i~~~~~~~N~~~~~~~~k~GF~~~g~~ 142 (152)
T PF13523_consen 107 LFEDPGVDRIVLDPHEDNTRAIRLYEKAGFRKVGEF 142 (152)
T ss_dssp HHTSTT--EEEEEEBTT-HHHHHHHHHTT-EEEEEE
T ss_pred HHhCCCCCEEEEecCcCCHHHHHHHHHcCCEEeeEE
Confidence 9984488888765 36688999999999999864
No 176
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.13 E-value=9.6e-06 Score=83.27 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=58.0
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.+++.+++ +.+|||+.+....+ ....+.+ +.|+++ |||+|||++||+++++.+..
T Consensus 47 ~~~~~~~~---~~~vG~~~~~~~~~---------~~~~~~~-------l~V~p~----~rg~GiG~~Ll~~~~~~~~~-- 101 (292)
T TIGR03448 47 RHLVAVDS---DPIVGYANLVPARG---------TDPAMAE-------LVVHPA----HRRRGIGRALIRALLAKGGG-- 101 (292)
T ss_pred eEEEEEEC---CEEEEEEEEEcCCC---------CcceEEE-------EEECHh----hcCCCHHHHHHHHHHHhccC--
Confidence 45666654 78999999875421 0111122 237777 99999999999999988753
Q ss_pred CCcEEEEe-cCCCcHHHHhhCCCeeeCceEe
Q 008466 531 RSRKMAVI-SGVGTRHYYRKLGYELEGPYMV 560 (564)
Q Consensus 531 g~~~i~~~-s~~~a~~fY~klGy~~~g~~m~ 560 (564)
...+.+. .+..|+.||+++||+..+.++.
T Consensus 102 -~~~~~~~~~n~~a~~fy~~~Gf~~~~~~~~ 131 (292)
T TIGR03448 102 -RLRVWAHGDLPAARALASRLGLVPTRELLQ 131 (292)
T ss_pred -ceEEEEcCCCHHHHHHHHHCCCEEccEEEE
Confidence 2334444 3557899999999998876443
No 177
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.13 E-value=0.00046 Score=73.12 Aligned_cols=151 Identities=11% Similarity=0.089 Sum_probs=94.3
Q ss_pred EEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcC---
Q 008466 182 VEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYG--- 256 (564)
Q Consensus 182 ve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G--- 256 (564)
+..| ||| |.|+ +..+.+.++++.+.+...-.+ ....+|++|.-- - ..+..+....
T Consensus 148 v~~VvfmGmGEPL-~N~d~v~~~l~~l~~~~gl~~----------------~~r~itvsT~G~--~-~~i~~l~~~~~l~ 207 (348)
T PRK14467 148 IRNVVFMGMGEPL-ANYENVRKAVQIMTSPWGLDL----------------SKRRITISTSGI--I-HQIKRMAEDPVMP 207 (348)
T ss_pred CCeEEEEccChhh-cCHHHHHHHHHHHcChhccCc----------------CCCcEEEECCCC--h-hHHHHHHhhcccc
Confidence 4444 888 9985 456666666776643211001 112588887642 1 2344444322
Q ss_pred CCeEEEccCCCCHHHHHhcCC---CCCHHHHHHHHHHHH-HcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCC-CC
Q 008466 257 CTRLEIGVQSTYEDVARDTNR---GHTVAAVADCFCLAK-DAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLF-RA 329 (564)
Q Consensus 257 ~~rvsiGvQS~~d~vL~~i~R---ght~~~~~~ai~~lr-~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l-~p 329 (564)
-..+.+.+-+.+++..+.+-+ .++.+++.++++... +.|-++. .=+|.|+ +++.++..+..+.+- .+ ..
T Consensus 208 ~v~LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~~V~ieyvLIpGv-NDs~e~a~~La~~l~---~l~~~ 283 (348)
T PRK14467 208 EVNLAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGRRIMLEYVLIKGV-NDSPEDALRLAQLIG---KNKKK 283 (348)
T ss_pred CeeEEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCCeEEEEEEEECCc-cCCHHHHHHHHHHHh---cCCCc
Confidence 246779999999999997655 467888888876543 5677765 4677777 788888777776664 23 24
Q ss_pred CeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHH
Q 008466 330 DGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDI 365 (564)
Q Consensus 330 d~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~ 365 (564)
-+|.+-|+.+.++.+ |++++.++..+.
T Consensus 284 ~~VnLIPynp~~~~~---------~~~ps~e~i~~f 310 (348)
T PRK14467 284 FKVNLIPFNPDPELP---------YERPELERVYKF 310 (348)
T ss_pred eEEEEecCCCCCCCC---------CCCCCHHHHHHH
Confidence 567777777666553 567777765443
No 178
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.12 E-value=0.00043 Score=73.12 Aligned_cols=151 Identities=13% Similarity=0.101 Sum_probs=96.9
Q ss_pred EEEEEEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHH-HcCCCe
Q 008466 182 VEFILMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQML-SYGCTR 259 (564)
Q Consensus 182 ve~I~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~-~~G~~r 259 (564)
.+.+||| |.|. ++-+.+.+.++.+.+.-. +. -....+||.|.-- .+ .+..|. +..-..
T Consensus 154 ~niVFmGmGEPL-~N~d~V~~~~~~l~~~~~--~~--------------~~~r~itvST~G~--~~-~i~~l~~~~~~~~ 213 (342)
T PRK14465 154 TNVVFMGMGEPM-HNYFNVIRAASILHDPDA--FN--------------LGAKRITISTSGV--VN-GIRRFIENKEPYN 213 (342)
T ss_pred eEEEEEcCCcch-hhHHHHHHHHHHHhChhh--hc--------------CCCCeEEEeCCCc--hH-HHHHHHhhccCce
Confidence 3455899 9995 454555556665543211 00 1224788988663 23 344444 344468
Q ss_pred EEEccCCCCHHHHHhc---CCCCCHHHHHHHHHHH-HHcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEE
Q 008466 260 LEIGVQSTYEDVARDT---NRGHTVAAVADCFCLA-KDAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRADGLK 333 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i---~Rght~~~~~~ai~~l-r~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~ 333 (564)
+.|.+-+.+++....+ ++.++.+++.++++.. ++.|-++. .-+|.|+ +++.++..+..+.+. .++ .++.
T Consensus 214 LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~Gv-NDs~eda~~L~~ll~---~l~-~kVn 288 (342)
T PRK14465 214 FAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGV-NMGRENANKLVKIAR---SLD-CKIN 288 (342)
T ss_pred EEEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCc-cCCHHHHHHHHHHHh---hCC-CcEE
Confidence 9999999999999987 7889999999999955 46677765 4567787 677776655555443 332 4566
Q ss_pred EeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHH
Q 008466 334 IYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVA 367 (564)
Q Consensus 334 iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~ 367 (564)
+-|+.+. + ..|++++.++..+...
T Consensus 289 LIPyN~~-~---------~~~~~ps~e~i~~F~~ 312 (342)
T PRK14465 289 VIPLNTE-F---------FGWRRPTDDEVAEFIM 312 (342)
T ss_pred EEccCCC-C---------CCCCCCCHHHHHHHHH
Confidence 6666551 1 3578888877666444
No 179
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=98.10 E-value=1e-05 Score=76.91 Aligned_cols=89 Identities=18% Similarity=0.348 Sum_probs=63.5
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
.+..+.++++.. ..+|||...|+.-+. +..++=..|| -|... |||+|||+.||+.+|..|.
T Consensus 90 ~~~~Yi~a~~~~--~~~vgf~~Frf~vd~--------g~~vlYcyEv-----qv~~~----yR~kGiGk~LL~~l~~~a~ 150 (202)
T KOG2488|consen 90 RKLRYICAWNNK--SKLVGFTMFRFTVDT--------GDPVLYCYEV-----QVASA----YRGKGIGKFLLDTLEKLAD 150 (202)
T ss_pred ccceEEEEEcCC--CceeeEEEEEEEccc--------CCeEEEEEEE-----eehhh----hhccChHHHHHHHHHHHHH
Confidence 345667778762 278999999987411 2222222332 24444 9999999999999999998
Q ss_pred hcCCCcEEEE---ecCCCcHHHHhhCCCeeeC
Q 008466 528 GEHRSRKMAV---ISGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 528 ~~~g~~~i~~---~s~~~a~~fY~klGy~~~g 556 (564)
.. ..++|.+ ..|.+|.+||+++||....
T Consensus 151 ~~-~~~kVmLTVf~~N~~al~Fy~~~gf~~~~ 181 (202)
T KOG2488|consen 151 SR-HMRKVMLTVFSENIRALGFYHRLGFVVDE 181 (202)
T ss_pred HH-HhhhheeeeecccchhHHHHHHcCcccCC
Confidence 84 6666643 3688999999999998754
No 180
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=98.10 E-value=0.00047 Score=73.10 Aligned_cols=160 Identities=14% Similarity=0.125 Sum_probs=98.5
Q ss_pred cEEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHH-cCC
Q 008466 181 KVEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLS-YGC 257 (564)
Q Consensus 181 kve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~-~G~ 257 (564)
++..| ||| |.|+.- .+ +..+++.+.+.-. +. .....+|++|.-- +. .++.+.+ ..-
T Consensus 146 ~i~~IvfmGmGEPLln-~~-v~~~i~~l~~~~~--~~--------------~~~r~itVsT~G~-~~--~i~~l~~~~~~ 204 (347)
T PRK14453 146 RLDSISFMGMGEALAN-PE-LFDALKILTDPNL--FG--------------LSQRRITISTIGI-IP--GIQRLTQEFPQ 204 (347)
T ss_pred CcceEEEeecCCccCC-HH-HHHHHHHHhcccc--cC--------------CCCCcEEEECCCC-ch--hHHHHHhhccC
Confidence 36655 899 999876 43 4555655544110 00 1224589998652 21 2333333 234
Q ss_pred CeEEEccCCCCHHHHHhc---CCCCCHHHHHHHHHHHHH-cCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCC-CCCC
Q 008466 258 TRLEIGVQSTYEDVARDT---NRGHTVAAVADCFCLAKD-AGFKVV--AHMMPDLPNVGVERDLESFREFFESPL-FRAD 330 (564)
Q Consensus 258 ~rvsiGvQS~~d~vL~~i---~Rght~~~~~~ai~~lr~-~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~-l~pd 330 (564)
..+.+-+-+.+++..+.+ ++.+..++++++++.... .|.++. .=+|.|+ +++.++..+.++.+..... -.+.
T Consensus 205 v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI~Gv-NDs~e~a~~L~~~lk~l~~~~~~~ 283 (347)
T PRK14453 205 VNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGV-NDSKEHAEAVVGLLRNRGSWEHLY 283 (347)
T ss_pred cCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeECCC-CCCHHHHHHHHHHHhhccccCCcc
Confidence 677778999999887744 456788888887765444 676654 5789998 7888887777776642110 1156
Q ss_pred eEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHH
Q 008466 331 GLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARI 369 (564)
Q Consensus 331 ~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~ 369 (564)
+|.+-|+.+..+.+ ..|++++.++.......+
T Consensus 284 ~VnLIPyn~~~~~~-------~~~~~ps~e~v~~f~~~L 315 (347)
T PRK14453 284 HVNLIPYNSTDKTP-------FKFQSSSAGQIKQFCSTL 315 (347)
T ss_pred eEEEecCCCCCCCC-------ccCCCCCHHHHHHHHHHH
Confidence 78888888876632 136777777665554433
No 181
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.09 E-value=7.7e-06 Score=85.76 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=56.6
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe--
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI-- 538 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~-- 538 (564)
++.+||++.++... +.. +++ .+.|+.+ +||+|+|++||++++++|++ .|+.+|.+.
T Consensus 242 d~givG~~~~~~~~----------~~~---~I~----~l~vs~r----~~grGig~~Ll~~l~~~a~~-~G~~~i~l~v~ 299 (320)
T TIGR01686 242 DSGIIGIFVFEKKE----------GNL---FID----DLCMSCR----ALGRGVETRMLRWLFEQALD-LGNHNARLYYR 299 (320)
T ss_pred CCceEEEEEEEecC----------CcE---EEE----EEEEcHh----HhcCcHHHHHHHHHHHHHHH-cCCCeEEEEEe
Confidence 45679999887442 111 122 2237887 99999999999999999999 599988653
Q ss_pred ---cCCCcHHHHhhCCCeeeC
Q 008466 539 ---SGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 539 ---s~~~a~~fY~klGy~~~g 556 (564)
.|..|+.||+|+||+.++
T Consensus 300 ~~~~N~~A~~fY~~~GF~~~~ 320 (320)
T TIGR01686 300 RTERNMPFLSFYEQIGFEDED 320 (320)
T ss_pred eCCCchHHHHHHHHcCCccCC
Confidence 478899999999998653
No 182
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=98.07 E-value=1.5e-05 Score=73.25 Aligned_cols=89 Identities=12% Similarity=0.122 Sum_probs=66.6
Q ss_pred EEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCC
Q 008466 453 FLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRS 532 (564)
Q Consensus 453 fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~ 532 (564)
++.+.+++++.++||.-.=... . +-+-+--+|-.-+-|.+. ||++|+|++|++.+-+.|.+ .|+
T Consensus 55 ~v~~ie~~~~~~aGf~~yf~~y-s----------tW~~k~~iYleDlyV~e~----yR~kG~Gs~Ll~~va~~A~~-~G~ 118 (163)
T KOG3216|consen 55 LVAAIETSGEVVAGFALYFNNY-S----------TWLGKQGIYLEDLYVREQ----YRGKGIGSKLLKFVAEEADK-LGT 118 (163)
T ss_pred EEEEEecCCCceeEEeeeeccc-c----------cccccceEEEEeeEecch----hcccChHHHHHHHHHHHHHH-cCC
Confidence 4555655678899999876554 1 111111234333447777 99999999999999999999 599
Q ss_pred cEE---EEecCCCcHHHHhhCCCeeeCc
Q 008466 533 RKM---AVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 533 ~~i---~~~s~~~a~~fY~klGy~~~g~ 557 (564)
.++ +++.|..|..||+|.||+..+.
T Consensus 119 ~rv~w~vldwN~rAi~lY~k~gaq~l~~ 146 (163)
T KOG3216|consen 119 PRVEWVVLDWNHRAILLYEKVGAQDLKE 146 (163)
T ss_pred CcEEEEEeccchhHHHHHHHhCccccce
Confidence 997 4668999999999999988664
No 183
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.04 E-value=1.8e-05 Score=83.24 Aligned_cols=77 Identities=17% Similarity=0.264 Sum_probs=61.4
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcC
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEH 530 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~ 530 (564)
.+++.+++ +.|||+.++. +. . ++ .+.|.++ |||+|+|++||.+++++|++.
T Consensus 32 ~~vv~~~~---~~lVg~g~l~-------------g~-~---ik----~vaV~~~----~rG~Glg~~L~~~L~~~a~~~- 82 (332)
T TIGR00124 32 IFIAVYED---EEIIGCGGIA-------------GN-V---IK----CVAIDES----LRGEGLALQLMTELENLAYEL- 82 (332)
T ss_pred EEEEEEEC---CEEEEEEEEe-------------cC-E---EE----EEEEcHH----HcCCCHHHHHHHHHHHHHHHc-
Confidence 34455554 7899999884 11 1 22 2447776 999999999999999999995
Q ss_pred CCcEEEEecCCCcHHHHhhCCCeeeC
Q 008466 531 RSRKMAVISGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 531 g~~~i~~~s~~~a~~fY~klGy~~~g 556 (564)
|+..+.+.+......||+++||...+
T Consensus 83 G~~~l~l~Tk~~~~~fy~klGF~~i~ 108 (332)
T TIGR00124 83 GRFHLFIFTKPEYAALFEYCGFKTLA 108 (332)
T ss_pred CCCEEEEEECchHHHHHHHcCCEEee
Confidence 99999999888888999999998876
No 184
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=98.00 E-value=2.4e-05 Score=74.38 Aligned_cols=77 Identities=17% Similarity=0.183 Sum_probs=57.3
Q ss_pred CeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe---
Q 008466 462 DILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI--- 538 (564)
Q Consensus 462 ~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~--- 538 (564)
+.+||++.+....+... . -++ |- -|+++ |||+|||++++..+.++|.+..|+++|.+.
T Consensus 76 ~~~iG~~~l~~~~~~~~-------~---~~i---g~--~i~~~----~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~ 136 (179)
T PRK10151 76 DELIGVLSFNRIEPLNK-------T---AYI---GY--WLDES----HQGQGIISQALQALIHHYAQSGELRRFVIKCRV 136 (179)
T ss_pred CEEEEEEEEEeeccCCC-------c---eEE---EE--EEChh----hcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcC
Confidence 68899999874321111 1 111 11 25665 999999999999999999875689998654
Q ss_pred cCCCcHHHHhhCCCeeeCc
Q 008466 539 SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 539 s~~~a~~fY~klGy~~~g~ 557 (564)
.|..+..+|+|+||+.+|.
T Consensus 137 ~N~~S~~v~ek~Gf~~~g~ 155 (179)
T PRK10151 137 DNPASNQVALRNGFTLEGC 155 (179)
T ss_pred CCHHHHHHHHHCCCEEEeE
Confidence 5778899999999999884
No 185
>PRK10562 putative acetyltransferase; Provisional
Probab=97.97 E-value=2.6e-05 Score=71.60 Aligned_cols=75 Identities=20% Similarity=0.310 Sum_probs=52.0
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
.|+...+ +.+||++.+... ..++ .+.|+++ |||+|||++||+.+++.+..
T Consensus 50 ~~v~~~~---~~~iG~~~~~~~----------------~~i~----~~~v~~~----~rg~G~g~~ll~~~~~~~~~--- 99 (145)
T PRK10562 50 TWVWEED---GKLLGFVSVLEG----------------RFVG----ALFVAPK----AVRRGIGKALMQHVQQRYPH--- 99 (145)
T ss_pred EEEEEEC---CEEEEEEEEeec----------------cEEE----EEEECHH----HcCCCHHHHHHHHHHhhCCe---
Confidence 4554444 788999988521 1222 1237776 99999999999999774322
Q ss_pred CcEEEE-ecCCCcHHHHhhCCCeeeCc
Q 008466 532 SRKMAV-ISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 532 ~~~i~~-~s~~~a~~fY~klGy~~~g~ 557 (564)
-.+.+ .+|..+..||+|+||+..|.
T Consensus 100 -~~~~v~~~N~~s~~~y~k~Gf~~~~~ 125 (145)
T PRK10562 100 -LSLEVYQKNQRAVNFYHAQGFRIVDS 125 (145)
T ss_pred -EEEEEEcCChHHHHHHHHCCCEEccc
Confidence 12333 35778999999999999884
No 186
>PRK01346 hypothetical protein; Provisional
Probab=97.91 E-value=5.5e-05 Score=81.83 Aligned_cols=89 Identities=21% Similarity=0.176 Sum_probs=61.3
Q ss_pred EEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 452 TFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 452 ~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
.++.+++ +.|||++.+.... . .+.+ ...+. ..|-..|.|+.+ |||+|+|++||+++++.+++ +|
T Consensus 49 ~~va~~~---~~lvg~~~~~~~~-~----~~~~-~~~~~--~~~i~~v~V~P~----~RgrGig~~Ll~~~l~~a~~-~g 112 (411)
T PRK01346 49 TLGAFDG---DEVVGTAGAFDLR-L----TVPG-GAVLP--AAGVTAVTVAPT----HRRRGLLTALMREQLRRIRE-RG 112 (411)
T ss_pred eEEEEEC---CEEEEEEEEeccc-c----ccCC-CCccc--eeEEEEEEEChh----hcCCCHHHHHHHHHHHHHHH-CC
Confidence 4667765 7899999875221 0 0100 10001 123334557877 99999999999999999999 59
Q ss_pred CcEEEEecCCCcHHHHhhCCCeeeCce
Q 008466 532 SRKMAVISGVGTRHYYRKLGYELEGPY 558 (564)
Q Consensus 532 ~~~i~~~s~~~a~~fY~klGy~~~g~~ 558 (564)
...+.+.... ..||+|+||+....+
T Consensus 113 ~~~~~L~~~~--~~~Y~r~Gf~~~~~~ 137 (411)
T PRK01346 113 EPVAALTASE--GGIYGRFGYGPATYS 137 (411)
T ss_pred CcEEEEECCc--hhhHhhCCCeeccce
Confidence 9877776543 579999999987753
No 187
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=97.90 E-value=6.9e-05 Score=67.59 Aligned_cols=84 Identities=19% Similarity=0.289 Sum_probs=57.8
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
.-+|+.+.. +++.+||++.+....+. .-.-|+- ..|.++ |||+|+|+.++..+.+++.++
T Consensus 56 ~~~~~i~~~-~~~~~iG~i~~~~~~~~----------~~~~eig-----~~i~~~----~~g~G~~~~~~~~~~~~~~~~ 115 (142)
T PF13302_consen 56 YYYFAIEDK-DDGEIIGFIGLYNIDKN----------NNWAEIG-----YWIGPD----YRGKGYGTEALKLLLDWAFEE 115 (142)
T ss_dssp EEEEEEEET-TTTEEEEEEEEEEEETT----------TTEEEEE-----EEEEGG----GTTSSHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEec-cCCceEEEeeeeecccC----------CCccccc-----cchhHH----HHhhhHHHHHHHHHHHHHHhc
Confidence 445555554 44678999999533211 1111222 236665 999999999999999999655
Q ss_pred CCCcEEEEe---cCCCcHHHHhhCCCe
Q 008466 530 HRSRKMAVI---SGVGTRHYYRKLGYE 553 (564)
Q Consensus 530 ~g~~~i~~~---s~~~a~~fY~klGy~ 553 (564)
+|+.+|... .|..++++++|+||+
T Consensus 116 ~~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 116 LGLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp STSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred CCcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 799998543 477889999999996
No 188
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.89 E-value=0.00073 Score=71.34 Aligned_cols=155 Identities=13% Similarity=0.067 Sum_probs=95.8
Q ss_pred cEEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCC-
Q 008466 181 KVEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGC- 257 (564)
Q Consensus 181 kve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~- 257 (564)
+++.| ||| |.|+... +..-..++.+.+..+ + +...+|+.|-- ..+.+..|.+.++
T Consensus 141 ~i~nIVfmGmGEPl~N~-d~vl~ai~~l~~~~~--i----------------~~r~itiST~G---~~~~i~rL~~~~v~ 198 (344)
T PRK14464 141 AVKKVVFMGMGEPAHNL-DNVLEAIDLLGTEGG--I----------------GHKNLVFSTVG---DPRVFERLPQQRVK 198 (344)
T ss_pred CCCEEEEeccCcccCCH-HHHHHHHHHhhchhc--C----------------CCceEEEeccc---CchHHHHHHHhcCC
Confidence 36655 899 9998443 444444444433221 1 22457776521 1234566665443
Q ss_pred CeEEEccCCCCHHHHHhcCC---CCCHHHHHHHHHHHH-HcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCe
Q 008466 258 TRLEIGVQSTYEDVARDTNR---GHTVAAVADCFCLAK-DAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRADG 331 (564)
Q Consensus 258 ~rvsiGvQS~~d~vL~~i~R---ght~~~~~~ai~~lr-~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~ 331 (564)
..+.+.+.+.++++.+.+.+ .++.+++.++++... ..|-++. .-||-|+ +++.++..+-.+.+.. + +-+
T Consensus 199 ~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~grri~~EyvLl~GV-NDs~e~a~~L~~~l~~---~-~~~ 273 (344)
T PRK14464 199 PALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARATGYPIQYQWTLLEGV-NDSDEEMDGIVRLLKG---K-YAV 273 (344)
T ss_pred hHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHHCCEEEEEEEEeCCC-CCCHHHHHHHHHHHhc---c-ccc
Confidence 46667889999999887665 568899988887654 3576655 4566677 8898877666655531 2 456
Q ss_pred EEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 008466 332 LKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILA 371 (564)
Q Consensus 332 i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~ 371 (564)
|.+-|+.+.+|+. |..++.++..+....+..
T Consensus 274 vNLIPyN~v~g~~---------~~rp~~~~i~~f~~~L~~ 304 (344)
T PRK14464 274 MNLIPYNSVDGDA---------YRRPSGERIVAMARYLHR 304 (344)
T ss_pred cceecCCccCCCC---------ccCCCHHHHHHHHHHHHH
Confidence 7777887777764 455776666555544433
No 189
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.81 E-value=0.0003 Score=75.79 Aligned_cols=118 Identities=11% Similarity=0.142 Sum_probs=86.1
Q ss_pred CCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEE--EEecCCCCCCHHHHHHHHHH
Q 008466 243 YCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA--HMMPDLPNVGVERDLESFRE 320 (564)
Q Consensus 243 ~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~--~lI~GLPget~e~~~~t~~~ 320 (564)
.++++.++...+++...+.|.|+|.+++..+.|=+.-...++.+.++++.++||.+++ -+++|+- + .+++.+|+..
T Consensus 125 Nl~~~d~~RI~~~~lspl~iSVhat~p~lR~~ll~n~~a~~il~~l~~l~~~~I~~h~qiVlcPGiN-D-g~~L~~Ti~d 202 (433)
T TIGR03279 125 NLPPAEWQRIEQLRLSPLYVSVHATEPSLRARLLKNPRAGLILEQLKWFQERRLQLHAQVVVCPGIN-D-GKHLERTLRD 202 (433)
T ss_pred CCCHHHHHHHHHcCCCCEEEEEecCCHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEEEEEEcCCcC-C-HHHHHHHHHH
Confidence 4788999999999999999999999999999887777999999999999999999775 5677762 2 3457778877
Q ss_pred HhcCCCCC-CCeEEEeeeeecC--CChhHHHHHcCCC--CCCCHHHHHHHHHHH
Q 008466 321 FFESPLFR-ADGLKIYPTLVIR--GTGLYELWKTGRY--RNYPPEQLVDIVARI 369 (564)
Q Consensus 321 ~~~~~~l~-pd~i~iy~l~v~~--GT~L~~~~~~G~~--~~~~~ee~~~~~~~~ 369 (564)
+.+ ++ -++-.+..+.+.| =|. +++|.+ ++++.+++.+.+..+
T Consensus 203 L~~---~~~~~~P~v~S~avVPVGlTk----~R~~l~~l~~~~~e~A~~vi~~i 249 (433)
T TIGR03279 203 LAQ---FHDGDWPTVLSVAVVPVGLTR----FRPEEDELTPVTPECARRVIAQV 249 (433)
T ss_pred HHh---hcccCCCceeEEEEEcccccc----CCCCCCCCccCCHHHHHHHHHHH
Confidence 763 31 0111222233333 354 345544 788998887776654
No 190
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=97.80 E-value=0.0008 Score=69.22 Aligned_cols=123 Identities=15% Similarity=0.129 Sum_probs=82.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEc
Q 008466 184 FILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIG 263 (564)
Q Consensus 184 ~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiG 263 (564)
+|.+.|.||..|. +.++++.+++... ...-+-||-. + ++.++.|. -.+-|.+-
T Consensus 84 tis~~GEPTLy~~--L~elI~~~k~~g~---------------------~~tflvTNgs-l-pdv~~~L~--~~dql~~s 136 (296)
T COG0731 84 TISLSGEPTLYPN--LGELIEEIKKRGK---------------------KTTFLVTNGS-L-PDVLEELK--LPDQLYVS 136 (296)
T ss_pred EEeCCCCcccccC--HHHHHHHHHhcCC---------------------ceEEEEeCCC-h-HHHHHHhc--cCCEEEEE
Confidence 3457899998765 6677777765321 1233334443 2 66777776 57999999
Q ss_pred cCCCCHHHHHhcCCCC---CHHHHHHHHHHHHHc--CCcEE-EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeee
Q 008466 264 VQSTYEDVARDTNRGH---TVAAVADCFCLAKDA--GFKVV-AHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPT 337 (564)
Q Consensus 264 vQS~~d~vL~~i~Rgh---t~~~~~~ai~~lr~~--G~~v~-~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l 337 (564)
+.+.++++++.+||.| ..+.+.+.++.+++. |-.+. .-++=|++..+ +.+.+-++.+ + ..+||.|-+-..
T Consensus 137 LdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~~vir~tlvkg~N~~~-e~~~~~a~ll-~--~~~Pd~velk~~ 212 (296)
T COG0731 137 LDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGRTVIRTTLVKGINDDE-EELEEYAELL-E--RINPDFVELKTY 212 (296)
T ss_pred eccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCCcEEEEEEEeccccCCh-HHHHHHHHHH-H--hcCCCeEEEecC
Confidence 9999999999999986 469999999999996 33333 46666775444 3333333333 2 467998877643
No 191
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=97.77 E-value=0.0014 Score=67.66 Aligned_cols=151 Identities=15% Similarity=0.190 Sum_probs=102.3
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccC
Q 008466 186 LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQ 265 (564)
Q Consensus 186 ~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQ 265 (564)
|.||.|+. .++.+.++++.+++. ...++++|+-- +..+.++.+.. .++.+.+.+.
T Consensus 131 ~sGGEPll-~~~~l~~l~~~~k~~----------------------g~~~~i~TnG~-~~~~~~~~ll~-~~d~~~isl~ 185 (295)
T TIGR02494 131 LSGGEPLL-QPEFALALLQACHER----------------------GIHTAVETSGF-TPWETIEKVLP-YVDLFLFDIK 185 (295)
T ss_pred eeCcchhc-hHHHHHHHHHHHHHc----------------------CCcEeeeCCCC-CCHHHHHHHHh-hCCEEEEeec
Confidence 78999985 555666677766542 12477888864 55567777765 3678899999
Q ss_pred CCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEE--EecCCCCCCHHHHHHHHHHHhcCCCCC--CCeEEEeeeeecC
Q 008466 266 STYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAH--MMPDLPNVGVERDLESFREFFESPLFR--ADGLKIYPTLVIR 341 (564)
Q Consensus 266 S~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~--lI~GLPget~e~~~~t~~~~~~~~~l~--pd~i~iy~l~v~~ 341 (564)
+.+++..+.+. |.+.+.+++.++.+.+.|+++.+. +|.|+ .++.+++.+.++.+. .++ ++.+.+.++.+..
T Consensus 186 ~~~~~~~~~~~-g~~~~~vl~~i~~l~~~~~~~~i~~~~v~~~-n~~~~ei~~l~~~~~---~~~~~v~~v~l~~~~~~g 260 (295)
T TIGR02494 186 HLDDERHKEVT-GVDNEPILENLEALAAAGKNVVIRIPVIPGF-NDSEENIEAIAAFLR---KLEPGVDEIDLLPYHRLG 260 (295)
T ss_pred cCChHHHHHHh-CCChHHHHHHHHHHHhCCCcEEEEeceeCCc-CCCHHHHHHHHHHHH---HhccCCceEEecCCCchh
Confidence 99999988874 457899999999999999886653 56665 456666666665554 344 5677777777766
Q ss_pred CChhHHH---HHcCCCCCCCHHHHHHHH
Q 008466 342 GTGLYEL---WKTGRYRNYPPEQLVDIV 366 (564)
Q Consensus 342 GT~L~~~---~~~G~~~~~~~ee~~~~~ 366 (564)
.++...+ +.-..++.++.+++.++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 288 (295)
T TIGR02494 261 ENKYRQLGREYPDSEIPDPAEEQLLELK 288 (295)
T ss_pred HHHHHHhCCCCccCCCCCCCHHHHHHHH
Confidence 6554432 222234457777666543
No 192
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.77 E-value=0.0041 Score=65.88 Aligned_cols=149 Identities=8% Similarity=0.095 Sum_probs=96.0
Q ss_pred EE-EcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCC-CeEEE
Q 008466 185 IL-MGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGC-TRLEI 262 (564)
Q Consensus 185 I~-~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~-~rvsi 262 (564)
++ +||.|+ +..+.+.++++.+.+...-.+ .-..+||+|.-- .+ .+..+.+.+. ..+.+
T Consensus 153 V~mggGEPL-ln~d~v~~~l~~l~~~~gi~~----------------~~r~itvsTsG~--~p-~i~~l~~~~~~~~lai 212 (342)
T PRK14454 153 VLMGSGEPL-DNYENVMKFLKIVNSPYGLNI----------------GQRHITLSTCGI--VP-KIYELADENLQITLAI 212 (342)
T ss_pred EEECCchhh-cCHHHHHHHHHHHhcccccCc----------------CCCceEEECcCC--hh-HHHHHHhhcccceEEE
Confidence 45 567775 566777777777764211001 112578887442 22 3556666542 34899
Q ss_pred ccCCCCHHHHHhcC---CCCCHHHHHHHHHH-HHHcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEee
Q 008466 263 GVQSTYEDVARDTN---RGHTVAAVADCFCL-AKDAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYP 336 (564)
Q Consensus 263 GvQS~~d~vL~~i~---Rght~~~~~~ai~~-lr~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~ 336 (564)
.+-+.+++..+.+- +.+..+++.++++. +.+.|.++. .=+|.|+ +++.++..+..+.+. .+ +-+|.+-|
T Consensus 213 sLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~rv~iey~LI~gv-NDs~eda~~La~llk---~l-~~~VnLiP 287 (342)
T PRK14454 213 SLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNRRITFEYALVKGV-NDSKEDAKELGKLLK---GM-LCHVNLIP 287 (342)
T ss_pred ecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCCEEEEEEEeECCC-CCCHHHHHHHHHHHh---cC-CceEEEEe
Confidence 99999999988665 45677888887765 667788765 4688887 788887776666553 23 35777777
Q ss_pred eeecCCChhHHHHHcCCCCCCCHHHHHHHHH
Q 008466 337 TLVIRGTGLYELWKTGRYRNYPPEQLVDIVA 367 (564)
Q Consensus 337 l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~ 367 (564)
+.+..+. .|++++.+++.+...
T Consensus 288 yn~~~~~---------~~~~ps~e~l~~f~~ 309 (342)
T PRK14454 288 VNEVKEN---------GFKKSSKEKIKKFKN 309 (342)
T ss_pred cCCCCCC---------CCCCCCHHHHHHHHH
Confidence 7776554 467788776655443
No 193
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.76 E-value=0.007 Score=64.78 Aligned_cols=152 Identities=13% Similarity=0.110 Sum_probs=95.8
Q ss_pred cEEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCC
Q 008466 181 KVEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCT 258 (564)
Q Consensus 181 kve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~ 258 (564)
++..| ||| |.|. +..+...++++.+.+...-.+ .-..+||+|.-. . ..+..|.+..-.
T Consensus 157 ~~~nvV~mGmGEPL-~N~d~v~~al~~l~~~~g~~i----------------~~r~itVsTsG~--~-~~i~~l~~~~d~ 216 (372)
T PRK11194 157 PITNVVMMGMGEPL-LNLNNVVPAMEIMLDDFGFGL----------------SKRRVTLSTSGV--V-PALDKLGDMIDV 216 (372)
T ss_pred ccceEEEecCCccc-cCHHHHHHHHHHHhhhhccCc----------------CCCeEEEECCCC--c-hHHHHHHhccCe
Confidence 35554 665 7774 566666666776664321001 112689998552 2 345666665545
Q ss_pred eEEEccCCCCHHHHHhcC---CCCCHHHHHHHHHH-HHHcC---CcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCC
Q 008466 259 RLEIGVQSTYEDVARDTN---RGHTVAAVADCFCL-AKDAG---FKVV--AHMMPDLPNVGVERDLESFREFFESPLFRA 329 (564)
Q Consensus 259 rvsiGvQS~~d~vL~~i~---Rght~~~~~~ai~~-lr~~G---~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~p 329 (564)
.+.+.+-+.+++..+.+- +.+..+++.+++.. +.+.| -++. .=+|.|+ +++.++..+.++.+- .++
T Consensus 217 ~LaiSLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~rrI~irypLIpGv-NDs~e~a~~La~ll~---~l~- 291 (372)
T PRK11194 217 ALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHV-NDGTEHAHQLAELLK---DTP- 291 (372)
T ss_pred EEEeeccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCCeEEEEEEeECCC-CCCHHHHHHHHHHHh---cCC-
Confidence 677788999999988554 45778888877554 34443 3444 5789998 788888777766654 343
Q ss_pred CeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHH
Q 008466 330 DGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIV 366 (564)
Q Consensus 330 d~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~ 366 (564)
-+|.+-|+.+.+|. .|++++.+++.+..
T Consensus 292 ~~VnLIPYN~~~~~---------~~~~ps~e~v~~f~ 319 (372)
T PRK11194 292 CKINLIPWNPFPGA---------PYGRSSNSRIDRFS 319 (372)
T ss_pred ceEEEecCCCCCCC---------CCCCCCHHHHHHHH
Confidence 47888888877654 34667776655443
No 194
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.71 E-value=0.00034 Score=66.43 Aligned_cols=90 Identities=18% Similarity=0.257 Sum_probs=64.2
Q ss_pred CeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHh
Q 008466 449 GWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG 528 (564)
Q Consensus 449 g~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~ 528 (564)
|-.++++.++ ++.++|+..+. +||+.-. ---+-|+=+| |++. +||+|+|++||+++-+.|+.
T Consensus 51 g~p~~V~~~~--~g~v~G~a~~~-----~fr~r~a--y~~tve~SiY-----v~~~----~~g~GiG~~Ll~~Li~~~~~ 112 (169)
T COG1247 51 GYPVVVAEEE--DGKVLGYASAG-----PFRERPA--YRHTVELSIY-----LDPA----ARGKGLGKKLLQALITEARA 112 (169)
T ss_pred CceEEEEEcC--CCeEEEEEEee-----eccCccc--cceEEEEEEE-----ECcc----cccccHHHHHHHHHHHHHHh
Confidence 3455666553 47899999885 2333221 1122334455 8877 99999999999999999999
Q ss_pred cCCCcEEE--Ee-cCCCcHHHHhhCCCeeeCc
Q 008466 529 EHRSRKMA--VI-SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 529 ~~g~~~i~--~~-s~~~a~~fY~klGy~~~g~ 557 (564)
. |++.+. +. +|.....|-+++||+..|.
T Consensus 113 ~-g~~~lva~I~~~n~aSi~lh~~~GF~~~G~ 143 (169)
T COG1247 113 L-GVRELVAGIESDNLASIALHEKLGFEEVGT 143 (169)
T ss_pred C-CeEEEEEEEcCCCcHhHHHHHHCCCEEecc
Confidence 4 998872 33 3555699999999999884
No 195
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=97.66 E-value=0.0011 Score=67.37 Aligned_cols=107 Identities=9% Similarity=0.090 Sum_probs=82.7
Q ss_pred EEEEeeCCCCCHHHHHHHHHcC--CCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHH---------------cCCc
Q 008466 235 MTIETRPDYCLGPHLRQMLSYG--CTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKD---------------AGFK 297 (564)
Q Consensus 235 itiEtrPd~i~~e~L~~L~~~G--~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~---------------~G~~ 297 (564)
|.+-.-|. .+++. .+++| ++||||++|...++-|+.+--..+..++..+...++. --|.
T Consensus 139 IHlK~IPg-as~~l---i~eaglyadRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~tp~fa 214 (404)
T COG4277 139 IHLKIIPG-ASPDL---IKEAGLYADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRKRHTPEFA 214 (404)
T ss_pred EEEEecCC-CCHHH---HHHHhhhhheeEEeEecCCcchhhhhCCCCChHHHHHHHHHHHHHHhhcccchhhhccCcccc
Confidence 34444554 34444 44555 7999999999999999999888888889888888775 1222
Q ss_pred ---EEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHH
Q 008466 298 ---VVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYE 347 (564)
Q Consensus 298 ---v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~ 347 (564)
-...||+|--|+|.++++.....+-. .++...|-+..+.|.++|++.-
T Consensus 215 paGQSTQmivGA~~~tD~~Ilsrs~~ly~--~y~lkRVyySaf~Pv~~s~~lp 265 (404)
T COG4277 215 PAGQSTQMIVGADGETDEDILSRSENLYG--RYSLKRVYYSAFSPVPSSPLLP 265 (404)
T ss_pred CCCCceEEEEecCCCchHHHHHHHHHHhh--ccceeEEEeecccccCCCCCCc
Confidence 23689999999999998888777764 6888889888999999998754
No 196
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=97.63 E-value=0.00012 Score=68.04 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=56.9
Q ss_pred CeEEEEEEEE-ecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEecC
Q 008466 462 DILVGLLRLR-KCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISG 540 (564)
Q Consensus 462 ~~lvG~lrlr-~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~ 540 (564)
+.+||.+.|. ++. .+. -|++. +.|+.. |||+|+|..|++.++..|++ .|++++-+.+.
T Consensus 49 g~viGC~aL~~~~~---------~~~---gE~~~----laV~pd----~r~~G~G~~Ll~~~~~~Ar~-~gi~~lf~LTt 107 (153)
T COG1246 49 GKVIGCAALHPVLE---------EDL---GELRS----LAVHPD----YRGSGRGERLLERLLADARE-LGIKELFVLTT 107 (153)
T ss_pred CcEEEEEeecccCc---------cCe---eeEEE----EEECHH----hcCCCcHHHHHHHHHHHHHH-cCCceeeeeec
Confidence 7889999997 232 122 23331 346766 99999999999999999999 69999976654
Q ss_pred CCcHHHHhhCCCeeeC
Q 008466 541 VGTRHYYRKLGYELEG 556 (564)
Q Consensus 541 ~~a~~fY~klGy~~~g 556 (564)
.+.+|++++||+...
T Consensus 108 -~~~~~F~~~GF~~vd 122 (153)
T COG1246 108 -RSPEFFAERGFTRVD 122 (153)
T ss_pred -ccHHHHHHcCCeECc
Confidence 889999999998754
No 197
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=97.49 E-value=0.00015 Score=61.15 Aligned_cols=51 Identities=20% Similarity=0.280 Sum_probs=39.3
Q ss_pred ccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEE-E-ecCCCcHHHHhhCCCeeeC
Q 008466 501 VHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMA-V-ISGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 501 v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~-~-~s~~~a~~fY~klGy~~~g 556 (564)
+.++ |||+|+|+.|+..+-+.+.++ |..-.. + .+|..++.||+|+||+...
T Consensus 29 t~p~----~RrrGlg~~lv~~l~~~~~~~-g~~~~l~v~~~N~~s~~ly~klGf~~~~ 81 (86)
T PF08445_consen 29 TLPE----HRRRGLGSALVAALARELLER-GKTPFLYVDADNEASIRLYEKLGFREIE 81 (86)
T ss_dssp E-GG----GTTSSHHHHHHHHHHHHHHHT-TSEEEEEEETT-HHHHHHHHHCT-EEEE
T ss_pred ECHH----HcCCCHHHHHHHHHHHHHHhC-CCcEEEEEECCCHHHHHHHHHcCCEEEE
Confidence 4555 999999999999998888885 777643 3 2577889999999998864
No 198
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0055 Score=62.48 Aligned_cols=114 Identities=16% Similarity=0.166 Sum_probs=84.8
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeE
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rv 260 (564)
+..| |.||.|+. -.+++..+++.+++. .+..+++|+-- ++++.++.|.++ ++.+
T Consensus 84 ~~gvt~SGGEP~~-q~e~~~~~~~~ake~----------------------Gl~~~l~TnG~-~~~~~~~~l~~~-~D~v 138 (260)
T COG1180 84 GGGVTFSGGEPTL-QAEFALDLLRAAKER----------------------GLHVALDTNGF-LPPEALEELLPL-LDAV 138 (260)
T ss_pred CCEEEEECCcchh-hHHHHHHHHHHHHHC----------------------CCcEEEEcCCC-CCHHHHHHHHhh-cCeE
Confidence 5666 78999975 445555666665543 23577777764 778888888888 8999
Q ss_pred EEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEE--EEEecCCCCCCHHHHHHHHHHHh
Q 008466 261 EIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVV--AHMMPDLPNVGVERDLESFREFF 322 (564)
Q Consensus 261 siGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~--~~lI~GLPget~e~~~~t~~~~~ 322 (564)
.+-+=.++++..+.+- +-+.+.+.+.++.+.+.|..+. .=+++|+ +++.+++.+.++++.
T Consensus 139 ~~DlK~~~~~~y~~~t-g~~~~~vl~~~~~l~~~g~~ve~r~lviPg~-~d~~e~i~~i~~~i~ 200 (260)
T COG1180 139 LLDLKAFDDELYRKLT-GADNEPVLENLELLADLGVHVEIRTLVIPGY-NDDEEEIRELAEFIA 200 (260)
T ss_pred EEeeccCChHHHHHHh-CCCcHHHHHHHHHHHcCCCeEEEEEEEECCC-CCCHHHHHHHHHHHH
Confidence 9999999999766665 4444999999999999999865 3577777 667777777776664
No 199
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=97.46 E-value=0.00011 Score=70.73 Aligned_cols=92 Identities=23% Similarity=0.336 Sum_probs=65.7
Q ss_pred CeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeee---eeecccccccCCCchhhhhcCHHHHHHHHHHHH
Q 008466 449 GWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVREL---HVYGTAVPVHGREADKLQHQGYGTLLMEEAERI 525 (564)
Q Consensus 449 g~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~rel---hvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~ 525 (564)
|.-.=+++.+ +..||.++.+.... .....|.. -.|...++|..+ ||++|||++|++.+.+.
T Consensus 54 ~~~~~~A~~~---~~~v~a~~~k~~~~---------~~~~~r~~~~~~~yi~~Lgvl~~----yR~~gIGs~Ll~~~~~~ 117 (187)
T KOG3138|consen 54 GDLTQLAYYN---EIAVGAVACKLIKF---------VQNAKRLFGNRVIYILSLGVLPR----YRNKGIGSKLLEFVKKY 117 (187)
T ss_pred CCHHHhhhhc---cccccceeeeehhh---------hhhhhhhhccceeEEEeecccHH----HHhcchHHHHHHHHHHH
Confidence 3333444444 56788888775431 11111211 267778889988 99999999999999999
Q ss_pred HHhcCCCcEEEE---ecCCCcHHHHhhCCCeeeC
Q 008466 526 ALGEHRSRKMAV---ISGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 526 A~~~~g~~~i~~---~s~~~a~~fY~klGy~~~g 556 (564)
+.+.+-++++.+ .+|..|..||++.||+..+
T Consensus 118 ~~~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~ 151 (187)
T KOG3138|consen 118 CSEAHQCRRVYLHVQAVNESAIEFYEKRGFEIVE 151 (187)
T ss_pred HhcccccceEEEEEEeCCCcHHHHHHhcCceEee
Confidence 998633677754 4688999999999999987
No 200
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=97.27 E-value=0.00094 Score=61.88 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=58.9
Q ss_pred CCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe-
Q 008466 460 RQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI- 538 (564)
Q Consensus 460 ~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~- 538 (564)
.++.+||++-..... +|. .+. .-=|++ .+.|... ||+.|+|++||..+-+.-.+.++.+.+.++
T Consensus 49 ~~gkiVGYvlAkmee-~p~-~~~-------~hGhIt--SlaV~rs----~RrlGla~kLm~qa~rAm~E~~~A~yvsLHV 113 (193)
T KOG3235|consen 49 ENGKIVGYVLAKMEE-DPD-DEP-------PHGHIT--SLAVKRS----YRRLGLAQKLMNQASRAMVEVYEAKYVSLHV 113 (193)
T ss_pred CCCcEEEEeeeehhh-ccc-CCC-------CCCeeE--Eeeehhh----HHHhhHHHHHHHHHHHHHHHhhcceEEEEee
Confidence 568899999776443 110 000 111443 4555655 999999999999988877776677777765
Q ss_pred --cCCCcHHHHh-hCCCeeeC
Q 008466 539 --SGVGTRHYYR-KLGYELEG 556 (564)
Q Consensus 539 --s~~~a~~fY~-klGy~~~g 556 (564)
||-.|.++|+ .+||++.+
T Consensus 114 R~SNraAl~LY~~tl~F~v~e 134 (193)
T KOG3235|consen 114 RKSNRAALHLYKNTLGFVVCE 134 (193)
T ss_pred ecccHHHHHhhhhccceEEee
Confidence 7888999999 99999876
No 201
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=97.17 E-value=0.0021 Score=48.14 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=41.8
Q ss_pred CeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEE
Q 008466 462 DILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAV 537 (564)
Q Consensus 462 ~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~ 537 (564)
+.++|++.+..... . .-.-+++ .+.++++ |||+|+|+++|..+.+++++ .|++++.+
T Consensus 8 ~~~ig~~~~~~~~~-------~---~~~~~l~----~~~v~~~----~~~~g~~~~~~~~~~~~~~~-~~~~~v~~ 64 (65)
T cd04301 8 GEIVGFASLSPDGS-------G---GDTAYIG----DLAVLPE----YRGKGIGSALLEAAEEEARE-RGAKRLRL 64 (65)
T ss_pred CEEEEEEEEEecCC-------C---CccEEEE----EEEECHH----HcCcCHHHHHHHHHHHHHHH-cCCcEEEe
Confidence 78899999986531 0 0112222 2336666 99999999999999999999 59998865
No 202
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=97.17 E-value=0.0009 Score=61.99 Aligned_cols=88 Identities=23% Similarity=0.243 Sum_probs=65.5
Q ss_pred eEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 450 WETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 450 ~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
.|.|+.-++|. +.|-|++.-+.-. ---+.|..-+++.|..+ ||..|+|+.||+-+|+.....
T Consensus 40 pe~~~~a~~p~-~~imgyimgk~Eg-------------~~~~wh~HvTAltVap~----~Rrl~la~~lm~~led~~d~~ 101 (173)
T KOG3234|consen 40 PEDFIVAEAPT-GEIMGYIMGKVEG-------------KDTEWHGHVTALTVAPD----YRRLGLAAKLMDTLEDVSDVD 101 (173)
T ss_pred hHHhEeccCCC-CceEEEEeeeccc-------------cCcceeeEEEEEEechh----HHHHHHHHHHHHHHHHHHHhh
Confidence 45566666655 5568998765322 12466777778888877 999999999999999999774
Q ss_pred CCCcEE---EEecCCCcHHHHhhCCCeeeC
Q 008466 530 HRSRKM---AVISGVGTRHYYRKLGYELEG 556 (564)
Q Consensus 530 ~g~~~i---~~~s~~~a~~fY~klGy~~~g 556 (564)
+.-.+ +..+|.-|..||+||||....
T Consensus 102 -~a~fvDLfVr~sN~iAI~mYkkLGY~~YR 130 (173)
T KOG3234|consen 102 -NAYFVDLFVRVSNQIAIDMYKKLGYSVYR 130 (173)
T ss_pred -hhheeeeeeeccchhHHHHHHhcCceEEE
Confidence 44444 334788999999999998865
No 203
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.08 E-value=0.12 Score=55.00 Aligned_cols=154 Identities=16% Similarity=0.099 Sum_probs=97.7
Q ss_pred CcEEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcC-
Q 008466 180 DKVEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYG- 256 (564)
Q Consensus 180 ~kve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G- 256 (564)
.+|..| ||| |.|. ++-+...+.++.|.+.-. +. -.-..|||.|-- + ...+..|.+-+
T Consensus 167 ~~i~NIVfMGMGEPL-~NydnV~~ai~il~d~~g--~~--------------is~R~ITVST~G--i-vp~I~~la~~~~ 226 (371)
T PRK14461 167 GRVTNLVFMGMGEPF-ANYDRWWQAVERLHDPQG--FN--------------LGARSMTVSTVG--L-VKGIRRLANERL 226 (371)
T ss_pred CceeeEEEEccCCch-hhHHHHHHHHHHhcCccc--cC--------------cCCCceEEEeec--c-hhHHHHHHhccc
Confidence 357666 787 7774 344444444554432210 10 012357888743 2 23566666655
Q ss_pred CCeEEEccCCCCHHHHHh---cCCCCCHHHHHHHHHHHHH-cCCcEEE--EEecCCCCCCHHHHHHHHHHHhcCCCCC--
Q 008466 257 CTRLEIGVQSTYEDVARD---TNRGHTVAAVADCFCLAKD-AGFKVVA--HMMPDLPNVGVERDLESFREFFESPLFR-- 328 (564)
Q Consensus 257 ~~rvsiGvQS~~d~vL~~---i~Rght~~~~~~ai~~lr~-~G~~v~~--~lI~GLPget~e~~~~t~~~~~~~~~l~-- 328 (564)
-..+.|.+-+.++++.+. +||.++.+++.+|++.--+ .|=.+.+ -||-|. +++.++..+-.+.+- .+.
T Consensus 227 ~v~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gv-NDs~e~A~~L~~llk---~~~~~ 302 (371)
T PRK14461 227 PINLAISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGK-NDHPEQAAALARLLR---GEAPP 302 (371)
T ss_pred CceEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCC-CCCHHHHHHHHHHHc---CCccc
Confidence 378999999999999885 4789999999999887643 4555554 566666 888887666555442 231
Q ss_pred ---CCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHH
Q 008466 329 ---ADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIV 366 (564)
Q Consensus 329 ---pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~ 366 (564)
+-+|.+-|+.+.+|++ |++++.+...+..
T Consensus 303 ~~l~~~VNLIp~Np~~~~~---------~~~ps~~~i~~F~ 334 (371)
T PRK14461 303 GPLLVHVNLIPWNPVPGTP---------LGRSERERVTTFQ 334 (371)
T ss_pred cCCceEEEEecCCCCCCCC---------CCCCCHHHHHHHH
Confidence 3578888888888885 4556666554433
No 204
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.0032 Score=58.87 Aligned_cols=80 Identities=21% Similarity=0.347 Sum_probs=59.0
Q ss_pred CCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEe--
Q 008466 461 QDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVI-- 538 (564)
Q Consensus 461 ~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~-- 538 (564)
++.+||.+.+..... .. ..-..+++.+ +... |+|+|+|+..+..+-++|-+..|+++|...
T Consensus 76 ~~~~iG~~~~~~~~~-----~~---~~~~~~ig~~-----l~~~----~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~ 138 (187)
T COG1670 76 DGELIGVIGLSDIDR-----AA---NGDLAEIGYW-----LDPE----YWGKGYATEALRALLDYAFEELGLHRIEATVD 138 (187)
T ss_pred CCeEEEEEEEEEecc-----cc---ccceEEEEEE-----EChH----HhcCchHHHHHHHHHHHhhhhcCceEEEEEec
Confidence 357899999984431 01 1112334333 3444 999999999999999999887799998543
Q ss_pred -cCCCcHHHHhhCCCeeeCc
Q 008466 539 -SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 539 -s~~~a~~fY~klGy~~~g~ 557 (564)
.|..+.+.|+|+||+.+|.
T Consensus 139 ~~N~~S~rv~ek~Gf~~eg~ 158 (187)
T COG1670 139 PENEASIRVYEKLGFRLEGE 158 (187)
T ss_pred CCCHHHHHHHHHcCChhhhh
Confidence 4778899999999999984
No 205
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=97.02 E-value=0.052 Score=53.78 Aligned_cols=125 Identities=18% Similarity=0.290 Sum_probs=93.9
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccC
Q 008466 186 LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQ 265 (564)
Q Consensus 186 ~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQ 265 (564)
|.||.|+.- .+.+..+++.+++. .+...++|+-- .+.+.+..+... ++.+.+-+=
T Consensus 44 ~SGGEPllq-~~fl~~l~~~~k~~----------------------gi~~~leTnG~-~~~~~~~~l~~~-~D~~l~DiK 98 (213)
T PRK10076 44 LSGGEVLMQ-AEFATRFLQRLRLW----------------------GVSCAIETAGD-APASKLLPLAKL-CDEVLFDLK 98 (213)
T ss_pred EeCchHHcC-HHHHHHHHHHHHHc----------------------CCCEEEECCCC-CCHHHHHHHHHh-cCEEEEeec
Confidence 789999865 56666777766542 13477888764 667788877764 899999999
Q ss_pred CCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeec
Q 008466 266 STYEDVARDTNRGHTVAAVADCFCLAKDAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVI 340 (564)
Q Consensus 266 S~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~ 340 (564)
+++++..+.+. |.+.+.+.+.++.+.+.|..+. .=+|+|+ .++.+++.+..+++. .++++.+.+.|+.+.
T Consensus 99 ~~d~~~~~~~t-G~~~~~il~nl~~l~~~g~~v~iR~~vIPg~-nd~~e~i~~ia~~l~---~l~~~~~~llpyh~~ 170 (213)
T PRK10076 99 IMDATQARDVV-KMNLPRVLENLRLLVSEGVNVIPRLPLIPGF-TLSRENMQQALDVLI---PLGIKQIHLLPFHQY 170 (213)
T ss_pred cCCHHHHHHHH-CCCHHHHHHHHHHHHhCCCcEEEEEEEECCC-CCCHHHHHHHHHHHH---HcCCceEEEecCCcc
Confidence 99999988775 4678999999999999998754 5788887 567777777777765 356666766666654
No 206
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=96.95 E-value=0.011 Score=59.65 Aligned_cols=123 Identities=11% Similarity=0.054 Sum_probs=91.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe-eCCCC-CHHHHHHHHHcCCCeEEEccCCC
Q 008466 190 TFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET-RPDYC-LGPHLRQMLSYGCTRLEIGVQST 267 (564)
Q Consensus 190 Tpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt-rPd~i-~~e~L~~L~~~G~~rvsiGvQS~ 267 (564)
.-+-...+.+.+-++.|+..- -++-+|+ -||.- +-+.++.+...|.+-..-+|||.
T Consensus 168 DlpDgGa~HiAkTVq~iK~k~----------------------p~ilvE~L~pDF~Gd~~~Ve~va~SGLDV~AHNvETV 225 (360)
T KOG2672|consen 168 DLPDGGANHIAKTVQKIKEKA----------------------PEILVECLTPDFRGDLKAVEKVAKSGLDVYAHNVETV 225 (360)
T ss_pred cCcCcchHHHHHHHHHHHhhC----------------------cccchhhcCccccCchHHHHHHHhcCccceecchhhH
Confidence 334455667777777776533 3577886 88855 66889999999999999999997
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeee
Q 008466 268 YEDVARDTNRGHTVAAVADCFCLAKDAGFKVV--AHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTL 338 (564)
Q Consensus 268 ~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~ 338 (564)
.+=+---=.|.-+..+.+.+++.+++..-.++ ..+|.|| |||.|.+..+++.+. +.++|-+++-.++
T Consensus 226 e~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~litktsiMlgl-getdeei~~tl~dLr---~~~vdv~t~gqym 294 (360)
T KOG2672|consen 226 EELTPFVRDPRANYRQSLSVLKHAKEVKPGLITKTSIMLGL-GETDEEIKQTLKDLR---AADVDVVTFGQYM 294 (360)
T ss_pred HhcchhhcCcccchHHhHHHHHHHHhhCCCceehhhhhhcc-CCCHHHHHHHHHHHH---HcCCcEEeccccc
Confidence 44332233356688999999999999755544 5899999 999999999998886 4667888776554
No 207
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=96.91 E-value=0.055 Score=57.81 Aligned_cols=112 Identities=12% Similarity=0.156 Sum_probs=79.5
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCC-HHHHHHHHHHHhcC
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVG-VERDLESFREFFES 324 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget-~e~~~~t~~~~~~~ 324 (564)
.+..+.+.++|++-|++.|+|.++++.+++=|.+..++.++.+++..+.++.+.++++. .||-+ -+++.+|++.+-
T Consensus 125 t~~~~~i~~~gvdev~~SVhtT~p~lR~klm~n~~A~~~le~L~~f~~~~~~v~a~iVl-~PGvNdge~L~kT~~dL~-- 201 (414)
T COG1625 125 TNRAERIIDAGVDEVYFSVHTTNPELRAKLMKNPNAEQLLELLRRFAERCIEVHAQIVL-CPGVNDGEELEKTLEDLE-- 201 (414)
T ss_pred cchHHHHHHcCCCeeEEEEeeCCHHHHHHHhcCCcHHHHHHHHHHHHHhhhheeeEEEE-cCCcCcHHHHHHHHHHHH--
Confidence 44556699999999999999999999999999999999999999999999998875443 34444 555666776664
Q ss_pred CCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHH
Q 008466 325 PLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDI 365 (564)
Q Consensus 325 ~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~ 365 (564)
++++..+.+....+.--|.. ++...+++.++++.++
T Consensus 202 -~~g~~~~~~~~~~pvGlt~~----n~~~i~~~t~~~l~~~ 237 (414)
T COG1625 202 -EWGAHEVILMRVVPVGLTRY----NRPGIRPPTPHELEEF 237 (414)
T ss_pred -HhCcCceeEEEeecceeeec----CCCCCCCCCHHHHHHH
Confidence 46677766664223333432 2334455666655443
No 208
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=96.79 E-value=0.025 Score=56.93 Aligned_cols=87 Identities=14% Similarity=0.062 Sum_probs=56.4
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeE
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rv 260 (564)
+..| |.||.|+..+ .+..|++.+++. ...+++|||-...++ .+.. ++++
T Consensus 73 ~~~V~lTGGEPll~~--~l~~li~~l~~~----------------------g~~v~leTNGtl~~~----~l~~--~d~v 122 (238)
T TIGR03365 73 PLHVSLSGGNPALQK--PLGELIDLGKAK----------------------GYRFALETQGSVWQD----WFRD--LDDL 122 (238)
T ss_pred CCeEEEeCCchhhhH--hHHHHHHHHHHC----------------------CCCEEEECCCCCcHH----HHhh--CCEE
Confidence 4445 7899998763 566777776542 135889998864432 2333 4578
Q ss_pred EEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecC
Q 008466 261 EIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPD 305 (564)
Q Consensus 261 siGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~G 305 (564)
.+.+-..+. +.....+...++++.+++ +.++.+.+.++
T Consensus 123 ~vs~K~~~s------g~~~~~~~~~~~ik~l~~-~~~~~vK~Vv~ 160 (238)
T TIGR03365 123 TLSPKPPSS------GMETDWQALDDCIERLDD-GPQTSLKVVVF 160 (238)
T ss_pred EEeCCCCCC------CCCCcHHHHHHHHHHhhh-cCceEEEEEEC
Confidence 787765444 222346777788888887 66777777776
No 209
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=96.76 E-value=0.081 Score=53.41 Aligned_cols=121 Identities=17% Similarity=0.241 Sum_probs=89.2
Q ss_pred EEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCC--CHHHHHHHHHHHHHcCCcEEEEEecCC-CCC
Q 008466 233 IGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGH--TVAAVADCFCLAKDAGFKVVAHMMPDL-PNV 309 (564)
Q Consensus 233 ~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rgh--t~~~~~~ai~~lr~~G~~v~~~lI~GL-Pge 309 (564)
..+.+-+++. .+.++.++++|+.+|.+.+-+.+.......+|+. ..+.+.++++.+++.|+.+.+.++.-. |..
T Consensus 67 ~~~~~l~~~~---~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~ 143 (265)
T cd03174 67 VKLQALVRNR---EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKT 143 (265)
T ss_pred cEEEEEccCc---hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCC
Confidence 3455555553 7899999999999999988555433344556654 678999999999999999988886544 347
Q ss_pred CHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 310 GVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 310 t~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
+++.+.+.++.+. +++++.|.+-.+ .| ..++++..+++..+...+|.
T Consensus 144 ~~~~l~~~~~~~~---~~g~~~i~l~Dt-------------~G---~~~P~~v~~li~~l~~~~~~ 190 (265)
T cd03174 144 DPEYVLEVAKALE---EAGADEISLKDT-------------VG---LATPEEVAELVKALREALPD 190 (265)
T ss_pred CHHHHHHHHHHHH---HcCCCEEEechh-------------cC---CcCHHHHHHHHHHHHHhCCC
Confidence 8888888888776 567888775433 12 26778888888888888763
No 210
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=96.71 E-value=0.0064 Score=57.40 Aligned_cols=86 Identities=23% Similarity=0.326 Sum_probs=60.0
Q ss_pred EEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeee-eecccccccCCCchhhhhcCHHHHHHHHHHHHHHhc
Q 008466 451 ETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELH-VYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGE 529 (564)
Q Consensus 451 e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relh-vyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~ 529 (564)
.+|+++.. ++.+||++.+|..-+.....+ .+ | .| .|.++ .|++|||++++.-+-..|++
T Consensus 69 ~~y~~v~~--d~~ivG~i~lRh~Ln~~ll~~-gG--------HIGY----~VrPs----eR~KGYA~emLkl~L~~ar~- 128 (174)
T COG3981 69 STYWAVDE--DGQIVGFINLRHQLNDFLLEE-GG--------HIGY----SVRPS----ERRKGYAKEMLKLALEKARE- 128 (174)
T ss_pred eeEEEEec--CCcEEEEEEeeeecchHHHhc-CC--------cccc----eeChh----hhccCHHHHHHHHHHHHHHH-
Confidence 44666654 478899999997643333222 22 4 33 24444 89999999999999999999
Q ss_pred CCCcEEEEec---CCCcHHHHhhCCCeeeC
Q 008466 530 HRSRKMAVIS---GVGTRHYYRKLGYELEG 556 (564)
Q Consensus 530 ~g~~~i~~~s---~~~a~~fY~klGy~~~g 556 (564)
+|++++.|+. |...+.-=++.|=..+.
T Consensus 129 lgi~~Vlvtcd~dN~ASrkvI~~NGGile~ 158 (174)
T COG3981 129 LGIKKVLVTCDKDNIASRKVIEANGGILEN 158 (174)
T ss_pred cCCCeEEEEeCCCCchhhHHHHhcCCEEeE
Confidence 6999997763 44457777777655544
No 211
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=96.44 E-value=0.5 Score=49.93 Aligned_cols=141 Identities=13% Similarity=0.161 Sum_probs=90.8
Q ss_pred CCcEEEE-EEc-CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHH-Hc
Q 008466 179 VDKVEFI-LMG-GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQML-SY 255 (564)
Q Consensus 179 ~~kve~I-~~G-GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~-~~ 255 (564)
..++.-| ||| |.| +++-+....+++.+.... +.+ + ....+|+.|.- +.+ .|..|. +.
T Consensus 150 ~~~i~NVV~MGMGEP-l~N~dnV~~a~~i~~~~~----G~~-----------l-s~R~iTvSTsG--i~~-~I~~l~~~~ 209 (349)
T COG0820 150 GRRISNVVFMGMGEP-LLNLDNVVKALEIINDDE----GLG-----------L-SKRRITVSTSG--IVP-RIRKLADEQ 209 (349)
T ss_pred cceeeeEEEecCCch-hhhHHHHHHHHHhhcCcc----ccc-----------c-cceEEEEecCC--Cch-hHHHHHhhc
Confidence 3456665 777 666 445555555544443211 111 1 12567888754 334 445555 44
Q ss_pred CCCeEEEccCCCCHHHHH---hcCCCCCHHHHHHHHHHHHH-cCCcEEE--EEecCCCCCCHHHHHHHHHHHhcCCCCCC
Q 008466 256 GCTRLEIGVQSTYEDVAR---DTNRGHTVAAVADCFCLAKD-AGFKVVA--HMMPDLPNVGVERDLESFREFFESPLFRA 329 (564)
Q Consensus 256 G~~rvsiGvQS~~d~vL~---~i~Rght~~~~~~ai~~lr~-~G~~v~~--~lI~GLPget~e~~~~t~~~~~~~~~l~p 329 (564)
.--.+.|.+.+.+++..+ -+||..+.++..++++.-.+ .|..|.. -|+-|. ++..++..+.++.+ .--+
T Consensus 210 ~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~~rVt~EY~Ll~~V-ND~~e~A~~L~~ll----~~~~ 284 (349)
T COG0820 210 LGVALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSGRRVTFEYVLLDGV-NDSLEHAKELAKLL----KGIP 284 (349)
T ss_pred CCeEEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccCceEEEEeeecccc-cCCHHHHHHHHHHh----cCCC
Confidence 557899999999999987 46788899999999988665 5666664 567777 55566655554443 2234
Q ss_pred CeEEEeeeeecCCCh
Q 008466 330 DGLKIYPTLVIRGTG 344 (564)
Q Consensus 330 d~i~iy~l~v~~GT~ 344 (564)
-+|.+-|+.+.+|+.
T Consensus 285 ~~VNLIP~Np~~~~~ 299 (349)
T COG0820 285 CKVNLIPYNPVPGSD 299 (349)
T ss_pred ceEEEeecCCCCCCC
Confidence 589999999999987
No 212
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=96.43 E-value=0.012 Score=48.75 Aligned_cols=64 Identities=22% Similarity=0.217 Sum_probs=43.9
Q ss_pred CeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEecCC
Q 008466 462 DILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGV 541 (564)
Q Consensus 462 ~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~~ 541 (564)
+..+|+|..+.. ...+--.|.+ |.++ +||||+|++||+++-++|+++ |.+-+.+++
T Consensus 8 g~~~a~l~Y~~~------------~~~~~i~hT~-----V~~~----~rGqGia~~L~~~~l~~a~~~-~~kv~p~C~-- 63 (78)
T PF14542_consen 8 GEEIAELTYRED------------GGVIVITHTE-----VPPE----LRGQGIAKKLVEAALDYAREN-GLKVVPTCS-- 63 (78)
T ss_dssp TTEEEEEEEEES------------SSEEEEEEEE-----E-CS----SSTTTHHHHHHHHHHHHHHHT-T-EEEETSH--
T ss_pred CEEEEEEEEEeC------------CCEEEEEEEE-----ECcc----ccCCcHHHHHHHHHHHHHHHC-CCEEEEECH--
Confidence 667888888753 2345556776 6776 999999999999999999995 765543332
Q ss_pred CcHHHHhh
Q 008466 542 GTRHYYRK 549 (564)
Q Consensus 542 ~a~~fY~k 549 (564)
-|..|.+|
T Consensus 64 y~~~~~~~ 71 (78)
T PF14542_consen 64 YVAKYFRR 71 (78)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 23444444
No 213
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=96.41 E-value=0.0054 Score=54.29 Aligned_cols=45 Identities=20% Similarity=0.171 Sum_probs=26.9
Q ss_pred EEEEcCCCCC-CCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHH
Q 008466 184 FILMGGTFMS-LPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPH 248 (564)
Q Consensus 184 ~I~~GGTpt~-l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~ 248 (564)
..|.||.|+. ++.+.+.++++.+.+..+ ...++++|+-....+..
T Consensus 51 v~~~GGEPll~~~~~~l~~~i~~~~~~~~--------------------~~~i~i~TNg~~~~~~~ 96 (119)
T PF13394_consen 51 VVFTGGEPLLYLNPEDLIELIEYLKERGP--------------------EIKIRIETNGTLPTEEK 96 (119)
T ss_dssp EEEESSSGGGSTTHHHHHHHHCTSTT-------------------------EEEEEE-STTHHHHH
T ss_pred EEEECCCCccccCHHHHHHHHHHHHhhCC--------------------CceEEEEeCCeeccccc
Confidence 4488999985 566677777766654332 26789999876443433
No 214
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=96.25 E-value=0.0035 Score=51.29 Aligned_cols=43 Identities=23% Similarity=0.208 Sum_probs=34.4
Q ss_pred cccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEecCCCcHHHHhhCCC
Q 008466 500 PVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGY 552 (564)
Q Consensus 500 ~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy 552 (564)
.|++. |||+|+|++|++.++++|+. .|+. .+..+..+|+++||
T Consensus 88 ~v~~~----~rg~Gig~~Ll~~~~~~~~~-~g~~-----~~~~~~~~~~~~~~ 130 (156)
T COG0454 88 YVLPE----YRGKGIGSALLEAALEWARK-RGIS-----LNRLALEVYEKNGF 130 (156)
T ss_pred Eecch----hhccchHHHHHHHHHHHHHH-cCce-----ehHHHHHHHHhcCC
Confidence 36776 99999999999999999999 4876 44556667777666
No 215
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=96.25 E-value=0.0086 Score=60.28 Aligned_cols=51 Identities=20% Similarity=0.351 Sum_probs=42.3
Q ss_pred hhhcCHHHHHHHHHHHHHHhcCCCcEEEEe--cCCCcHHHHhhCCCeeeCceEe
Q 008466 509 LQHQGYGTLLMEEAERIALGEHRSRKMAVI--SGVGTRHYYRKLGYELEGPYMV 560 (564)
Q Consensus 509 ~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~--s~~~a~~fY~klGy~~~g~~m~ 560 (564)
|||+||++.|+..+-....++ |..-.... .|.-|.+.|+|+||+..|.|+.
T Consensus 213 yR~kGyAt~lva~L~~~lL~e-Gk~~~L~~~~~N~~A~~iY~riGF~~~g~~~~ 265 (268)
T COG3393 213 YRGKGYATALVATLAAKLLAE-GKIPCLFVNSDNPVARRIYQRIGFREIGEFRE 265 (268)
T ss_pred HccccHHHHHHHHHHHHHHhC-CCeeEEEEecCCHHHHHHHHHhCCeecceEEE
Confidence 999999999999987777775 76654333 5778899999999999998764
No 216
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=96.15 E-value=0.0036 Score=57.84 Aligned_cols=53 Identities=21% Similarity=0.436 Sum_probs=44.2
Q ss_pred cccCCCchhhhhcCHHHHHHHH-HHHHHHhcCCCcEEEEecCCCcHHHHhhCCCeeeCc
Q 008466 500 PVHGREADKLQHQGYGTLLMEE-AERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 500 ~v~~~~~~~~q~~GiG~~Lm~~-aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~~g~ 557 (564)
.|+.. ||.||+|..|+.. +.....+. -.+++++++.....+||+++||...|+
T Consensus 108 ~Ihpa----~rk~g~a~~Ll~~ylq~l~~q~-i~~r~~Li~h~pLvPFYEr~gFk~vgp 161 (190)
T KOG4144|consen 108 AIHPA----FRKQGRAPILLWRYLQHLGSQP-IVRRAALICHDPLVPFYERFGFKAVGP 161 (190)
T ss_pred EecHH----HHhcCcchhHHHHHHHHhhcCc-cccceeeeecCCccchhHhcCceeecc
Confidence 46766 9999999999987 55555553 556889999999999999999999997
No 217
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=95.55 E-value=1.4 Score=46.55 Aligned_cols=114 Identities=17% Similarity=0.222 Sum_probs=85.3
Q ss_pred EEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHH
Q 008466 233 IGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVE 312 (564)
Q Consensus 233 ~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e 312 (564)
..+++-..|...+.+.++...+.|++.|.+..- . ...+.+.+.++.+|+.|+.+...+|... .-+++
T Consensus 77 ~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~-~-----------~e~d~~~~~i~~ak~~G~~v~~~l~~s~-~~~~e 143 (333)
T TIGR03217 77 AKVAVLLLPGIGTVHDLKAAYDAGARTVRVATH-C-----------TEADVSEQHIGMARELGMDTVGFLMMSH-MTPPE 143 (333)
T ss_pred CEEEEEeccCccCHHHHHHHHHCCCCEEEEEec-c-----------chHHHHHHHHHHHHHcCCeEEEEEEccc-CCCHH
Confidence 457777788888899999999999998888762 1 1234678999999999999888777664 56888
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceE
Q 008466 313 RDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTR 378 (564)
Q Consensus 313 ~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~ir 378 (564)
.+.+.++.+. +.+++.|.+- .| -| .+.+++..+++..+.+.+++.+.
T Consensus 144 ~l~~~a~~~~---~~Ga~~i~i~------DT-------~G---~~~P~~v~~~v~~l~~~l~~~i~ 190 (333)
T TIGR03217 144 KLAEQAKLME---SYGADCVYIV------DS-------AG---AMLPDDVRDRVRALKAVLKPETQ 190 (333)
T ss_pred HHHHHHHHHH---hcCCCEEEEc------cC-------CC---CCCHHHHHHHHHHHHHhCCCCce
Confidence 8888888876 5778876442 22 12 35688888888888888865433
No 218
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=95.01 E-value=0.69 Score=43.99 Aligned_cols=122 Identities=8% Similarity=0.032 Sum_probs=78.8
Q ss_pred hcchHHHHHHHHHHHHH-cCCCCCcEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEE
Q 008466 158 RYNPYVQARSRIDQLKR-LGHSVDKVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGM 235 (564)
Q Consensus 158 ~~~~y~~~l~r~~~l~~-~g~~~~kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~ei 235 (564)
.+..-.++..|+.+..+ .| .+.+ +.|+.|+.-+ +.+.++++.+ . +-.+
T Consensus 72 ~f~~P~eVaeRL~ei~K~~g-----~d~vRiSG~EP~l~~-EHvlevIeLl----~--------------------~~tF 121 (228)
T COG5014 72 DFLSPEEVAERLLEISKKRG-----CDLVRISGAEPILGR-EHVLEVIELL----V--------------------NNTF 121 (228)
T ss_pred cccCHHHHHHHHHHHHHhcC-----CcEEEeeCCCccccH-HHHHHHHHhc----c--------------------CceE
Confidence 34455677777766544 34 4455 7899997554 5554555543 1 1357
Q ss_pred EEEeeCCCC--CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHcCCcEEEEEecCCCCC
Q 008466 236 TIETRPDYC--LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRG--HTVAAVADCFCLAKDAGFKVVAHMMPDLPNV 309 (564)
Q Consensus 236 tiEtrPd~i--~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~lI~GLPge 309 (564)
.+||+--.+ ++..++.|.+.--..|-+.+--.+++...+|.-. .-..--.+|++.+.+.|+.+..-.++++--|
T Consensus 122 vlETNG~~~g~drslv~el~nr~nv~vRVsvKG~dpesF~kIT~asp~~F~~QL~aLr~L~~~g~rf~pA~~~~f~~E 199 (228)
T COG5014 122 VLETNGLMFGFDRSLVDELVNRLNVLVRVSVKGWDPESFEKITGASPEYFRYQLKALRHLHGKGHRFWPAVVYDFFRE 199 (228)
T ss_pred EEEeCCeEEecCHHHHHHHhcCCceEEEEEecCCCHHHHHHHhcCChHHHHHHHHHHHHHHhcCceeeehhhhccchh
Confidence 888887666 8888999888544455555666777777766421 1134456888999999998777778877443
No 219
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=94.94 E-value=0.057 Score=46.88 Aligned_cols=41 Identities=22% Similarity=0.137 Sum_probs=31.5
Q ss_pred hhhcCHHHHHHHHHHHHHHhcCCCcEEEEecCCCcHHHHhhC
Q 008466 509 LQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKL 550 (564)
Q Consensus 509 ~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~~~a~~fY~kl 550 (564)
+||||+|++|++.|-+.||++ |.+-+-+++...|.-+.++.
T Consensus 51 lrGqGia~~L~~~al~~ar~~-g~kiiP~Csf~~a~~~~~~~ 91 (99)
T COG2388 51 LRGQGIAQKLVEKALEEAREA-GLKIIPLCSFAVATYFERHP 91 (99)
T ss_pred HcCCcHHHHHHHHHHHHHHHc-CCeEcccchHHHHHHHHhCh
Confidence 999999999999999999996 88766666644444444443
No 220
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=94.88 E-value=2.7 Score=44.60 Aligned_cols=114 Identities=18% Similarity=0.198 Sum_probs=84.1
Q ss_pred EEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHH
Q 008466 233 IGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVE 312 (564)
Q Consensus 233 ~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e 312 (564)
..+++-..|...+.+.++...+.|++.|-+..- .++ .+.+.++++.+|+.|+.+...+|.. +.-+++
T Consensus 78 ~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~-~~e-----------~~~~~~~i~~ak~~G~~v~~~l~~a-~~~~~e 144 (337)
T PRK08195 78 AKIAALLLPGIGTVDDLKMAYDAGVRVVRVATH-CTE-----------ADVSEQHIGLARELGMDTVGFLMMS-HMAPPE 144 (337)
T ss_pred CEEEEEeccCcccHHHHHHHHHcCCCEEEEEEe-cch-----------HHHHHHHHHHHHHCCCeEEEEEEec-cCCCHH
Confidence 456666678878889999999999998887751 111 3467899999999999988877765 456888
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceE
Q 008466 313 RDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTR 378 (564)
Q Consensus 313 ~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~ir 378 (564)
.+.+.++.+. +++++.|.+- .| -| .+.+++..+++..+.+.++|.+.
T Consensus 145 ~l~~~a~~~~---~~Ga~~i~i~------DT-------~G---~~~P~~v~~~v~~l~~~l~~~i~ 191 (337)
T PRK08195 145 KLAEQAKLME---SYGAQCVYVV------DS-------AG---ALLPEDVRDRVRALRAALKPDTQ 191 (337)
T ss_pred HHHHHHHHHH---hCCCCEEEeC------CC-------CC---CCCHHHHHHHHHHHHHhcCCCCe
Confidence 8888888876 5778875442 23 12 35688888888888888855443
No 221
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=94.73 E-value=1.8 Score=44.28 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=85.9
Q ss_pred EEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHH
Q 008466 233 IGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVE 312 (564)
Q Consensus 233 ~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e 312 (564)
..+.+-+||..++.+.++...+.|+..|.+.+ ..+.++.+.++++.+|+.|+.+.+.++... +-+++
T Consensus 72 ~~~~~~~~~~~~~~~~l~~a~~~gv~~iri~~------------~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~-~~~~~ 138 (266)
T cd07944 72 TKIAVMVDYGNDDIDLLEPASGSVVDMIRVAF------------HKHEFDEALPLIKAIKEKGYEVFFNLMAIS-GYSDE 138 (266)
T ss_pred CEEEEEECCCCCCHHHHHHHhcCCcCEEEEec------------ccccHHHHHHHHHHHHHCCCeEEEEEEeec-CCCHH
Confidence 46778888887888999999999998887765 224789999999999999999888777655 46788
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 313 RDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 313 ~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
.+.+.++.+. +.+++.|.+- .| -| ..++++..+++..+.+.+++
T Consensus 139 ~~~~~~~~~~---~~g~~~i~l~------DT-------~G---~~~P~~v~~lv~~l~~~~~~ 182 (266)
T cd07944 139 ELLELLELVN---EIKPDVFYIV------DS-------FG---SMYPEDIKRIISLLRSNLDK 182 (266)
T ss_pred HHHHHHHHHH---hCCCCEEEEe------cC-------CC---CCCHHHHHHHHHHHHHhcCC
Confidence 8888888876 4678876543 23 12 35788888888888887764
No 222
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=93.71 E-value=0.077 Score=51.73 Aligned_cols=50 Identities=26% Similarity=0.397 Sum_probs=34.3
Q ss_pred ccCCCchhhhhcCHHHHHHHHHHHHH-------------------------HhcCCCcEEEEecCC--CcHHHHhhCCCe
Q 008466 501 VHGREADKLQHQGYGTLLMEEAERIA-------------------------LGEHRSRKMAVISGV--GTRHYYRKLGYE 553 (564)
Q Consensus 501 v~~~~~~~~q~~GiG~~Lm~~aE~~A-------------------------~~~~g~~~i~~~s~~--~a~~fY~klGy~ 553 (564)
|+.+ +|++|||++|++.+++++ +.. +++.|-+.-+. ...+|..|.||.
T Consensus 98 vhP~----~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~vDylGtSFG~t~~Ll~FW~k~gf~ 172 (196)
T PF13718_consen 98 VHPD----LQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPP-GVDYLGTSFGATPELLKFWQKNGFV 172 (196)
T ss_dssp E-CC----C-SSSHHHHHHHHHHHT------------------------------S-SEEEEEEE--HHHHHHHHCTT-E
T ss_pred EChh----hhcCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccc-CCCEEEeccCCCHHHHHHHHHCCcE
Confidence 7887 999999999999999999 353 67776554333 458999999998
Q ss_pred ee
Q 008466 554 LE 555 (564)
Q Consensus 554 ~~ 555 (564)
..
T Consensus 173 pv 174 (196)
T PF13718_consen 173 PV 174 (196)
T ss_dssp EE
T ss_pred EE
Confidence 84
No 223
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=93.67 E-value=5.3 Score=41.04 Aligned_cols=109 Identities=17% Similarity=0.125 Sum_probs=81.3
Q ss_pred EEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEec-CCCCCCHHH
Q 008466 235 MTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMP-DLPNVGVER 313 (564)
Q Consensus 235 itiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~-GLPget~e~ 313 (564)
+.+...|+.+.++.++...+.|+..|.+..-. ++ ++.+.++++.+|+.|+.+...++. .-+.-+++.
T Consensus 83 ~~~~~~p~~~~~~di~~~~~~g~~~iri~~~~-~~-----------~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~ 150 (275)
T cd07937 83 VGYRHYPDDVVELFVEKAAKNGIDIFRIFDAL-ND-----------VRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEY 150 (275)
T ss_pred cCccCCCcHHHHHHHHHHHHcCCCEEEEeecC-Ch-----------HHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHH
Confidence 34455788889999999999999998887633 23 678999999999999988766543 336678888
Q ss_pred HHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 314 DLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 314 ~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
+.+.++.+. +.+++.|.+- .| -| ..++++..+++..+.+.++
T Consensus 151 ~~~~~~~~~---~~Ga~~i~l~------DT-------~G---~~~P~~v~~lv~~l~~~~~ 192 (275)
T cd07937 151 YVKLAKELE---DMGADSICIK------DM-------AG---LLTPYAAYELVKALKKEVG 192 (275)
T ss_pred HHHHHHHHH---HcCCCEEEEc------CC-------CC---CCCHHHHHHHHHHHHHhCC
Confidence 888888886 5678877653 23 12 2567888888888887765
No 224
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=93.15 E-value=0.14 Score=46.39 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=20.3
Q ss_pred EEEE-EEcCCCCC-CCHHHHHHHHHHHHHHh
Q 008466 182 VEFI-LMGGTFMS-LPADYRDYFIRNLHDAL 210 (564)
Q Consensus 182 ve~I-~~GGTpt~-l~~~~l~~ll~~l~~~~ 210 (564)
+..| +.||.|+. ...+.+.++++.+++.+
T Consensus 53 ~~~i~l~GGEPll~~~~~~l~~i~~~~k~~~ 83 (139)
T PF13353_consen 53 IKGIVLTGGEPLLHENYDELLEILKYIKEKF 83 (139)
T ss_dssp CCEEEEECSTGGGHHSHHHHHHHHHHHHHTT
T ss_pred ceEEEEcCCCeeeeccHhHHHHHHHHHHHhC
Confidence 4555 78999976 25577777888777654
No 225
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=92.65 E-value=13 Score=39.90 Aligned_cols=119 Identities=13% Similarity=0.205 Sum_probs=81.4
Q ss_pred EEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCC--CHHHHHHHHHHHHHcCCcEEEEEecCCCCCC
Q 008466 233 IGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGH--TVAAVADCFCLAKDAGFKVVAHMMPDLPNVG 310 (564)
Q Consensus 233 ~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rgh--t~~~~~~ai~~lr~~G~~v~~~lI~GLPget 310 (564)
..+..-+|+ ..+.++.+.++|+.+|.+-+=+-+-.....+++.. ..+.+.++++.+++.|+.+.+.++-. .-.+
T Consensus 64 ~~v~~~~r~---~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda-~r~~ 139 (363)
T TIGR02090 64 AEICSLARA---LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDA-TRTD 139 (363)
T ss_pred cEEEEEccc---CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeec-CCCC
Confidence 345555554 47889999999999888877443333344666542 45778899999999999988877654 3456
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 311 VERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 311 ~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
++.+.+.++.+. +.+++.|.+--+. | ..++++..+++..+.+.++
T Consensus 140 ~~~l~~~~~~~~---~~g~~~i~l~DT~---G-------------~~~P~~v~~li~~l~~~~~ 184 (363)
T TIGR02090 140 IDFLIKVFKRAE---EAGADRINIADTV---G-------------VLTPQKMEELIKKLKENVK 184 (363)
T ss_pred HHHHHHHHHHHH---hCCCCEEEEeCCC---C-------------ccCHHHHHHHHHHHhcccC
Confidence 777888887776 5678876654321 2 2456777777777776654
No 226
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=92.56 E-value=11 Score=43.11 Aligned_cols=104 Identities=18% Similarity=0.175 Sum_probs=75.7
Q ss_pred eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEe-cCCCCCCHHHHHHHH
Q 008466 240 RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMM-PDLPNVGVERDLESF 318 (564)
Q Consensus 240 rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI-~GLPget~e~~~~t~ 318 (564)
.||.+-...++...++|++.+.+-. +.|+- +.+..+++.+++.|+.+...+- .+-|--|++.+.+.+
T Consensus 93 ypd~vv~~~v~~A~~~Gvd~irif~-~lnd~-----------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a 160 (592)
T PRK09282 93 YPDDVVEKFVEKAAENGIDIFRIFD-ALNDV-----------RNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELA 160 (592)
T ss_pred ccchhhHHHHHHHHHCCCCEEEEEE-ecChH-----------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHH
Confidence 4888899999999999998887765 44442 5778899999999998765442 233888899999999
Q ss_pred HHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 319 REFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 319 ~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
+.+. +.++|.|.+- .| .|. ..+++..+++..+++.++
T Consensus 161 ~~l~---~~Gad~I~i~------Dt-------~G~---~~P~~~~~lv~~lk~~~~ 197 (592)
T PRK09282 161 KELE---EMGCDSICIK------DM-------AGL---LTPYAAYELVKALKEEVD 197 (592)
T ss_pred HHHH---HcCCCEEEEC------Cc-------CCC---cCHHHHHHHHHHHHHhCC
Confidence 8887 4677876543 23 232 456777777777777654
No 227
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=92.56 E-value=1.6 Score=44.81 Aligned_cols=61 Identities=23% Similarity=0.245 Sum_probs=47.6
Q ss_pred eeCCCCCHHHHHHHHHc-C-CCeEEEccCCCCHHH---HHhcCCCCCHHHHHHHHHHHHHcCCcEE
Q 008466 239 TRPDYCLGPHLRQMLSY-G-CTRLEIGVQSTYEDV---ARDTNRGHTVAAVADCFCLAKDAGFKVV 299 (564)
Q Consensus 239 trPd~i~~e~L~~L~~~-G-~~rvsiGvQS~~d~v---L~~i~Rght~~~~~~ai~~lr~~G~~v~ 299 (564)
.+-++||...++.+.+. | -.+|+|=.|=-..-- .-.|+|.-|.+++.+|++.+++.||...
T Consensus 267 ghlecCTkpI~~wiae~~g~~~~vNiM~QY~P~ykA~eypeI~R~lt~eE~e~a~~~a~~~gl~~~ 332 (335)
T COG1313 267 GHLECCTKPILRWIAENLGNDVRVNIMFQYRPEYKAEEYPEINRRLTREEYEKALEYAEKLGLTNI 332 (335)
T ss_pred CchhhccHHHHHHHHHhCCCCeeEEehhhccchhhhhhchhhcccCCHHHHHHHHHHHHHcCCcee
Confidence 35567799999999886 4 467777777554433 3378999999999999999999999754
No 228
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=92.22 E-value=4 Score=40.54 Aligned_cols=123 Identities=15% Similarity=0.138 Sum_probs=83.5
Q ss_pred EEEEEEeeCCCCCHHH-HHHHHHcCCCeEEEccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHcCCcEEEEEecCCCCC
Q 008466 233 IGMTIETRPDYCLGPH-LRQMLSYGCTRLEIGVQSTYEDVARDTNRG--HTVAAVADCFCLAKDAGFKVVAHMMPDLPNV 309 (564)
Q Consensus 233 ~eitiEtrPd~i~~e~-L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~lI~GLPge 309 (564)
..+..-+++..-+-+. ++.+++.|++++.+-+-..+......+++. ...+.+.++++.+|+.|+.+.+.++... .-
T Consensus 56 ~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~-~~ 134 (237)
T PF00682_consen 56 ARLQALCRANEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDAS-RT 134 (237)
T ss_dssp SEEEEEEESCHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG-GS
T ss_pred cccceeeeehHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc-cc
Confidence 3566666765333344 555677999999998744433444455542 2357778889999999999987776664 45
Q ss_pred CHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 310 GVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 310 t~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
+++.+.+.++.+. +++++.|.+-- | +-..++++..+++..+.+.+|+
T Consensus 135 ~~~~~~~~~~~~~---~~g~~~i~l~D------t----------~G~~~P~~v~~lv~~~~~~~~~ 181 (237)
T PF00682_consen 135 DPEELLELAEALA---EAGADIIYLAD------T----------VGIMTPEDVAELVRALREALPD 181 (237)
T ss_dssp SHHHHHHHHHHHH---HHT-SEEEEEE------T----------TS-S-HHHHHHHHHHHHHHSTT
T ss_pred cHHHHHHHHHHHH---HcCCeEEEeeC------c----------cCCcCHHHHHHHHHHHHHhccC
Confidence 7788888888886 45788775532 2 1125688899999999999985
No 229
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=91.83 E-value=4.7 Score=40.57 Aligned_cols=123 Identities=20% Similarity=0.154 Sum_probs=82.6
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcC-CCchhhHHHhhhcccCCcccEEEEEEe-eCCCCCHHHHHHHHHcCCC
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSG-HTSANVEEAVTYSEHGATKCIGMTIET-RPDYCLGPHLRQMLSYGCT 258 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~-~~~~~l~e~~~~~~~~~~~~~eitiEt-rPd~i~~e~L~~L~~~G~~ 258 (564)
|..+ |++||.+..|.+.+++.++..+++--. +.. ++-+|. -....-++.++..++.|++
T Consensus 25 ID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G------------------Gtl~E~~~~q~~~~~Yl~~~k~lGf~ 86 (237)
T TIGR03849 25 ITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG------------------GTLFEIAHSKGKFDEYLNECDELGFE 86 (237)
T ss_pred eeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC------------------ccHHHHHHHhhhHHHHHHHHHHcCCC
Confidence 7788 899999999999999888877653210 011 111111 1112346788899999999
Q ss_pred eEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCC----CCCHHHHHHHHHHHhcCCCCCCCeEEE
Q 008466 259 RLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLP----NVGVERDLESFREFFESPLFRADGLKI 334 (564)
Q Consensus 259 rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLP----get~e~~~~t~~~~~~~~~l~pd~i~i 334 (564)
.|+|.-=|++ .+.++-.+.++.+++.||++..-+=.-.| -.+.+++.+.++..++ .+.+.|-+
T Consensus 87 ~IEiS~G~~~----------i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~Le---AGA~~Vii 153 (237)
T TIGR03849 87 AVEISDGSME----------ISLEERCNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRIKLINKDLE---AGADYVII 153 (237)
T ss_pred EEEEcCCccC----------CCHHHHHHHHHHHHhCCCeEeccccccCCcccccCCHHHHHHHHHHHHH---CCCcEEEE
Confidence 9999876653 56788889999999999987643221222 1456677777777774 56777654
Q ss_pred e
Q 008466 335 Y 335 (564)
Q Consensus 335 y 335 (564)
-
T Consensus 154 E 154 (237)
T TIGR03849 154 E 154 (237)
T ss_pred e
Confidence 3
No 230
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=91.82 E-value=16 Score=37.08 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=81.0
Q ss_pred EEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHH
Q 008466 233 IGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVE 312 (564)
Q Consensus 233 ~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e 312 (564)
..+.+-.+|.....+.++...+.|++.|.+.. +.++ ...+.++++.+++.|+.+...++-.. .-+++
T Consensus 75 ~~~~~~~~~~~~~~~~i~~a~~~g~~~iri~~-~~s~-----------~~~~~~~i~~ak~~G~~v~~~~~~~~-~~~~~ 141 (263)
T cd07943 75 AKLGVLLLPGIGTVDDLKMAADLGVDVVRVAT-HCTE-----------ADVSEQHIGAARKLGMDVVGFLMMSH-MASPE 141 (263)
T ss_pred CEEEEEecCCccCHHHHHHHHHcCCCEEEEEe-chhh-----------HHHHHHHHHHHHHCCCeEEEEEEecc-CCCHH
Confidence 34555566777778999999999999888855 4433 24678899999999999887775543 35778
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 313 RDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 313 ~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
.+.+.++.+. +.++|.|.+ +.| +-...+++..+++..+.+.++.
T Consensus 142 ~~~~~~~~~~---~~G~d~i~l------~DT----------~G~~~P~~v~~lv~~l~~~~~~ 185 (263)
T cd07943 142 ELAEQAKLME---SYGADCVYV------TDS----------AGAMLPDDVRERVRALREALDP 185 (263)
T ss_pred HHHHHHHHHH---HcCCCEEEE------cCC----------CCCcCHHHHHHHHHHHHHhCCC
Confidence 8888888876 567887653 333 1135688888888888888765
No 231
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=91.35 E-value=24 Score=38.06 Aligned_cols=117 Identities=14% Similarity=0.172 Sum_probs=79.4
Q ss_pred EEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCH
Q 008466 234 GMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRG--HTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGV 311 (564)
Q Consensus 234 eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~lI~GLPget~ 311 (564)
.+..-+|. ..+.++...++|+++|.+.+-+-+-.....+|+. ...+.+.++++.+++.|+.+.+..+.+- -.++
T Consensus 69 ~i~~~~r~---~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~-r~~~ 144 (378)
T PRK11858 69 SILALNRA---VKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDAS-RTDL 144 (378)
T ss_pred EEEEEccc---CHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCC-CCCH
Confidence 34444443 4778999999999999999955554555566653 2345666699999999999888765443 4567
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhC
Q 008466 312 ERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMV 373 (564)
Q Consensus 312 e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~l 373 (564)
+.+.+.++.+. +.+++.|.+- .|- | ..++++..+++..+.+.+
T Consensus 145 ~~l~~~~~~~~---~~Ga~~I~l~------DT~-------G---~~~P~~v~~lv~~l~~~~ 187 (378)
T PRK11858 145 DFLIEFAKAAE---EAGADRVRFC------DTV-------G---ILDPFTMYELVKELVEAV 187 (378)
T ss_pred HHHHHHHHHHH---hCCCCEEEEe------ccC-------C---CCCHHHHHHHHHHHHHhc
Confidence 77777777776 4678876543 231 1 245677777777776665
No 232
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=91.22 E-value=1.3 Score=41.37 Aligned_cols=55 Identities=9% Similarity=0.137 Sum_probs=32.4
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeE
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rv 260 (564)
+..| |.||. +-.+.+.++++.+++. . ..+.++|+ ...++..+.+.+. ++.+
T Consensus 62 ~~gVt~SGGE---l~~~~l~~ll~~lk~~-G---------------------l~i~l~Tg--~~~~~~~~~il~~-iD~l 113 (147)
T TIGR02826 62 ISCVLFLGGE---WNREALLSLLKIFKEK-G---------------------LKTCLYTG--LEPKDIPLELVQH-LDYL 113 (147)
T ss_pred CCEEEEechh---cCHHHHHHHHHHHHHC-C---------------------CCEEEECC--CCCHHHHHHHHHh-CCEE
Confidence 3455 78888 5556777777777642 1 34677875 2333344444332 6777
Q ss_pred EEcc
Q 008466 261 EIGV 264 (564)
Q Consensus 261 siGv 264 (564)
.+|.
T Consensus 114 ~~g~ 117 (147)
T TIGR02826 114 KTGR 117 (147)
T ss_pred EECh
Confidence 7776
No 233
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=90.86 E-value=17 Score=41.56 Aligned_cols=104 Identities=14% Similarity=0.168 Sum_probs=76.0
Q ss_pred eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEE-ecCCCCCCHHHHHHHH
Q 008466 240 RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHM-MPDLPNVGVERDLESF 318 (564)
Q Consensus 240 rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~l-I~GLPget~e~~~~t~ 318 (564)
.||.+.++.++...+.|++.+.+-. +.|+ .+.+..+++.++++|+.+...+ +.+-|--|.+.+.+.+
T Consensus 88 ypddvv~~~v~~a~~~Gvd~irif~-~lnd-----------~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~ 155 (582)
T TIGR01108 88 YADDVVERFVKKAVENGMDVFRIFD-ALND-----------PRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLA 155 (582)
T ss_pred CchhhHHHHHHHHHHCCCCEEEEEE-ecCc-----------HHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHH
Confidence 5888889999999999998887764 4444 2568889999999999877543 2336777889888999
Q ss_pred HHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 319 REFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 319 ~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
+.+. +.+.|.|.+- .| .| ..++.+..+++..+++.++
T Consensus 156 ~~~~---~~Gad~I~i~------Dt-------~G---~~~P~~v~~lv~~lk~~~~ 192 (582)
T TIGR01108 156 EELL---EMGVDSICIK------DM-------AG---ILTPKAAYELVSALKKRFG 192 (582)
T ss_pred HHHH---HcCCCEEEEC------CC-------CC---CcCHHHHHHHHHHHHHhCC
Confidence 8887 4677766542 33 12 2457777777777777765
No 234
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=90.76 E-value=1.3 Score=39.62 Aligned_cols=90 Identities=14% Similarity=0.188 Sum_probs=54.2
Q ss_pred EEeeCCCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHH
Q 008466 443 DYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEA 522 (564)
Q Consensus 443 ~y~a~gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~a 522 (564)
+|..-.|.+-++-..+ |.+|||+-+- +.+|.+--.+ --+-|. -|..+ ||++|+||+-.++.
T Consensus 30 ~~w~~~~~~~~~~~~~---~~~igf~l~L---~~~~~~~~iD--~~~~ef-------FIi~k----~~~~GvGR~aaK~I 90 (143)
T COG5628 30 TYWRDPVREAWLFRIG---GLPVGFALVL---DLAHSPTPID--RAVAEF-------FIVRK----HRRRGVGRAAAKAI 90 (143)
T ss_pred hhhcCcccceeEEEEC---Cceeeeeeee---cccCCCCccc--ccchhe-------Eeeeh----hhccchhHHHHHHH
Confidence 4544455555555555 7789998553 1222222111 001111 13344 99999999988877
Q ss_pred HHHHHhcCCCcEE-EEecCCCcHHHHhhCCCee
Q 008466 523 ERIALGEHRSRKM-AVISGVGTRHYYRKLGYEL 554 (564)
Q Consensus 523 E~~A~~~~g~~~i-~~~s~~~a~~fY~klGy~~ 554 (564)
=..++ |.-.+ ++..|..|+.|+++.=|..
T Consensus 91 f~~~~---g~w~Va~i~EN~PA~~fwK~~~~t~ 120 (143)
T COG5628 91 FGSAW---GVWQVATVRENTPARAFWKRVAETY 120 (143)
T ss_pred HHHhh---ceEEEEEeccCChhHHHHHhhhccc
Confidence 55443 44444 6778999999999987754
No 235
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=90.48 E-value=22 Score=36.08 Aligned_cols=117 Identities=17% Similarity=0.165 Sum_probs=80.4
Q ss_pred EEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHH-HHHhcCCC--CCHHHHHHHHHHHHHcCCcEEEEEecCCCCCC
Q 008466 234 GMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYED-VARDTNRG--HTVAAVADCFCLAKDAGFKVVAHMMPDLPNVG 310 (564)
Q Consensus 234 eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~-vL~~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~lI~GLPget 310 (564)
.+..-.|+ +.+.++...+.|+++|.+.+ |.++. ..+.+|+. ...+.+.++++.+++.|+.+.+.++..- .-+
T Consensus 63 ~~~~~~r~---~~~~v~~a~~~g~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~-~~~ 137 (259)
T cd07939 63 RLIVWCRA---VKEDIEAALRCGVTAVHISI-PVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDAS-RAD 137 (259)
T ss_pred EEEEeccC---CHHHHHHHHhCCcCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCC-CCC
Confidence 34444454 37788999999999999988 55554 44566653 2345667899999999998887666543 356
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 311 VERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 311 ~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
++.+.+.++.+. +.+++.|.+ ..| -| ...+++..+++..+.+.+|
T Consensus 138 ~~~~~~~~~~~~---~~G~~~i~l------~DT-------~G---~~~P~~v~~lv~~l~~~~~ 182 (259)
T cd07939 138 PDFLIEFAEVAQ---EAGADRLRF------ADT-------VG---ILDPFTTYELIRRLRAATD 182 (259)
T ss_pred HHHHHHHHHHHH---HCCCCEEEe------CCC-------CC---CCCHHHHHHHHHHHHHhcC
Confidence 787888887776 467887654 233 12 2567788888887777765
No 236
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=90.35 E-value=15 Score=42.01 Aligned_cols=103 Identities=13% Similarity=0.131 Sum_probs=72.7
Q ss_pred eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEec-CCCCCCHHHHHHHH
Q 008466 240 RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMP-DLPNVGVERDLESF 318 (564)
Q Consensus 240 rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~-GLPget~e~~~~t~ 318 (564)
.||.+-+..++...+.|++.+.|.. ++|+ ++.+..+++.+|+.|..+...+-+ +-|-.|.+.+.+.+
T Consensus 94 ypddvv~~~v~~a~~~Gid~~rifd-~lnd-----------~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a 161 (593)
T PRK14040 94 YADDVVERFVERAVKNGMDVFRVFD-AMND-----------PRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLA 161 (593)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEee-eCCc-----------HHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHH
Confidence 4787778899999999999888874 4444 367889999999999975432221 35777888888888
Q ss_pred HHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhC
Q 008466 319 REFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMV 373 (564)
Q Consensus 319 ~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~l 373 (564)
+.+. +.++|.|.+- .| .|. +.+++..+++..+++.+
T Consensus 162 ~~l~---~~Gad~i~i~------Dt-------~G~---l~P~~~~~lv~~lk~~~ 197 (593)
T PRK14040 162 KQLE---DMGVDSLCIK------DM-------AGL---LKPYAAYELVSRIKKRV 197 (593)
T ss_pred HHHH---HcCCCEEEEC------CC-------CCC---cCHHHHHHHHHHHHHhc
Confidence 8876 4677766542 23 122 45677777777776664
No 237
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=90.27 E-value=0.64 Score=47.56 Aligned_cols=51 Identities=14% Similarity=0.106 Sum_probs=41.7
Q ss_pred hhhcCHHHHHHHHHHHHHHhcCCCcEEEEecCCCcHHHHhhCCCeeeCceEe
Q 008466 509 LQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMV 560 (564)
Q Consensus 509 ~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~~g~~m~ 560 (564)
|||||+++.+-.+.-..+.++ |+.-..-..|.....+=+||||+...+|..
T Consensus 200 yR~kGLA~~~aa~~I~~Cl~~-~l~P~WDc~N~~S~~lA~kLGf~~~~~Y~~ 250 (265)
T PF12746_consen 200 YRGKGLATAVAAAFILECLEN-GLYPSWDCHNLASIALAEKLGFHFDFEYTA 250 (265)
T ss_dssp CTTSSHHHHHHHHHHHHHHHT-T-EEE-EESSHHHHHHHHHCT--EEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHC-CCCcCeeCCCHHHHHHHHHcCCcccceeee
Confidence 999999999999999999994 988876667877899999999999888754
No 238
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=89.98 E-value=24 Score=35.90 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=82.4
Q ss_pred EEEEEEeeCCCCCHHHHHHHHHcC----CCeEEEccCCCCHHHH-HhcCCC--CCHHHHHHHHHHHHHcCCcEEEEEecC
Q 008466 233 IGMTIETRPDYCLGPHLRQMLSYG----CTRLEIGVQSTYEDVA-RDTNRG--HTVAAVADCFCLAKDAGFKVVAHMMPD 305 (564)
Q Consensus 233 ~eitiEtrPd~i~~e~L~~L~~~G----~~rvsiGvQS~~d~vL-~~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~lI~G 305 (564)
..+..-+|+. .+.++...++| +++|.+-+ |.++.-+ +.+|+. ..++.+.++++.+++.|+.+.+..+.+
T Consensus 62 ~~~~~l~r~~---~~~v~~a~~~~~~~~~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~ 137 (268)
T cd07940 62 AEICGLARAV---KKDIDAAAEALKPAKVDRIHTFI-ATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDA 137 (268)
T ss_pred CEEEEEccCC---HhhHHHHHHhCCCCCCCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecC
Confidence 4566666664 66778888888 88888877 5555544 456654 235778889999999999988766654
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 306 LPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 306 LPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
- .-+++.+.+.++.+. +++++.|.+- .| -| ..++++..+++..+...+|
T Consensus 138 ~-~~~~~~~~~~~~~~~---~~G~~~i~l~------DT-------~G---~~~P~~v~~lv~~l~~~~~ 186 (268)
T cd07940 138 T-RTDLDFLIEVVEAAI---EAGATTINIP------DT-------VG---YLTPEEFGELIKKLKENVP 186 (268)
T ss_pred C-CCCHHHHHHHHHHHH---HcCCCEEEEC------CC-------CC---CCCHHHHHHHHHHHHHhCC
Confidence 3 356777788888876 4678876542 23 11 2567888888888888776
No 239
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=89.89 E-value=6.8 Score=41.75 Aligned_cols=110 Identities=15% Similarity=0.178 Sum_probs=78.6
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCCHHHHH-hcCCC--CCHHHHHHHHHHHHHcCCcEEEEE--ecCCCCC---CHHHHHH
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTYEDVAR-DTNRG--HTVAAVADCFCLAKDAGFKVVAHM--MPDLPNV---GVERDLE 316 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~d~vL~-~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~l--I~GLPge---t~e~~~~ 316 (564)
+.+.++...++|+.+|.+.+ |.+|.-++ .+|+. ...+.+.++++.+++.|+.+...+ .+|.|.+ +++.+.+
T Consensus 123 n~~die~A~~~g~~~v~i~~-s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~ 201 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFA-SASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAY 201 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHH
Confidence 78899999999999999999 77776555 34443 233445579999999999987555 6788876 4566677
Q ss_pred HHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 317 SFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 317 t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
.++.+. +.+.+.|.+- .| -| ..++.+..+++..+.+.+|
T Consensus 202 ~~~~~~---~~Gad~I~l~------DT-------~G---~a~P~~v~~lv~~l~~~~~ 240 (347)
T PLN02746 202 VAKELY---DMGCYEISLG------DT-------IG---VGTPGTVVPMLEAVMAVVP 240 (347)
T ss_pred HHHHHH---HcCCCEEEec------CC-------cC---CcCHHHHHHHHHHHHHhCC
Confidence 777776 5678876653 33 12 2457778888877777765
No 240
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=89.79 E-value=3.2 Score=41.02 Aligned_cols=115 Identities=16% Similarity=0.116 Sum_probs=78.3
Q ss_pred cEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE-eeCCCCCHHHHHHHHHcCCC
Q 008466 181 KVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE-TRPDYCLGPHLRQMLSYGCT 258 (564)
Q Consensus 181 kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE-trPd~i~~e~L~~L~~~G~~ 258 (564)
-|..| |++||++.++.++.++.+...+++--..+ +. +.-+| +.-+.--++.+...++.||+
T Consensus 43 yVDfvKfgwGT~~Li~kd~V~ekid~y~e~~i~v~---------------pG--Gtlfe~a~~~~kvdeyl~e~~~lGfe 105 (258)
T COG1809 43 YVDFVKFGWGTSSLIDKDQVKEKIDMYKENDIYVF---------------PG--GTLFEIAYSQDKVDEYLNEAKELGFE 105 (258)
T ss_pred heeeeeecccccccccHHHHHHHHHHHHHcCceec---------------CC--ceEEEeehhcccHHHHHHHHHHcCcc
Confidence 38888 89999999999999999998876432111 11 23334 34444567899999999999
Q ss_pred eEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCC----CCHHHHHHHHHHHh
Q 008466 259 RLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPN----VGVERDLESFREFF 322 (564)
Q Consensus 259 rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPg----et~e~~~~t~~~~~ 322 (564)
.|+|.==|. ..+.++-.+.++++.+.||.+-.-+=--.|. +++++....+...+
T Consensus 106 ~iEIS~G~i----------~m~~eek~~lIe~a~d~Gf~vlsEvGkk~~e~~~~l~~~d~~k~i~~dv 163 (258)
T COG1809 106 AIEISNGTI----------PMSTEEKCRLIERAVDEGFMVLSEVGKKDPESDSALSPDDRVKLINDDV 163 (258)
T ss_pred EEEecCCee----------ecchHHHHHHHHHHHhcccEEehhhcccCcchhhhcChHHHHHHHHHHH
Confidence 999965443 3467888899999999999876533222221 23445555555544
No 241
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=89.59 E-value=26 Score=35.75 Aligned_cols=117 Identities=14% Similarity=0.173 Sum_probs=78.0
Q ss_pred EEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHH-hcCCC--CCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCH
Q 008466 235 MTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVAR-DTNRG--HTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGV 311 (564)
Q Consensus 235 itiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~-~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~lI~GLPget~ 311 (564)
+..-.|| +.+.++...+.|++.|.+-+ |.++..++ .+++. ...+.+.++++.+++.|+.+.+.++-.. +-++
T Consensus 66 v~~~~r~---~~~di~~a~~~g~~~i~i~~-~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~-r~~~ 140 (262)
T cd07948 66 ILTHIRC---HMDDARIAVETGVDGVDLVF-GTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSF-RSDL 140 (262)
T ss_pred EEEEecC---CHHHHHHHHHcCcCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeC-CCCH
Confidence 4333455 47789999999999988877 55565544 34432 2345577778999999999888775444 3346
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 312 ERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 312 e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
+.+.+.++.+. +.+++.+.+ ..| -| ..++++..+++..+...++.
T Consensus 141 ~~l~~~~~~~~---~~g~~~i~l------~Dt-------~G---~~~P~~v~~~~~~~~~~~~~ 185 (262)
T cd07948 141 VDLLRVYRAVD---KLGVNRVGI------ADT-------VG---IATPRQVYELVRTLRGVVSC 185 (262)
T ss_pred HHHHHHHHHHH---HcCCCEEEE------CCc-------CC---CCCHHHHHHHHHHHHHhcCC
Confidence 77777777776 467786543 233 12 35677888888877777653
No 242
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=89.53 E-value=9.1 Score=39.36 Aligned_cols=111 Identities=19% Similarity=0.180 Sum_probs=80.1
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHcCCcEEEEEe--cCCCCC---CHHHHHHH
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRG--HTVAAVADCFCLAKDAGFKVVAHMM--PDLPNV---GVERDLES 317 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~lI--~GLPge---t~e~~~~t 317 (564)
+.+.++...+.|+..|.+.+-+.+....+.+|+. ...+.+.++++.+++.|+.+...++ +|.|.+ +++.+.+.
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~ 154 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEV 154 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHH
Confidence 5778999999999999998866555555677765 4557888899999999999876665 555654 45666677
Q ss_pred HHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 318 FREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 318 ~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
++.+. +.+++.|.+- .|- | ..++.+..+++..+++.+|
T Consensus 155 ~~~~~---~~Ga~~i~l~------DT~-------G---~~~P~~v~~lv~~l~~~~~ 192 (274)
T cd07938 155 AERLL---DLGCDEISLG------DTI-------G---VATPAQVRRLLEAVLERFP 192 (274)
T ss_pred HHHHH---HcCCCEEEEC------CCC-------C---ccCHHHHHHHHHHHHHHCC
Confidence 77765 4677776542 231 1 2567788888888887775
No 243
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=89.40 E-value=33 Score=36.68 Aligned_cols=117 Identities=14% Similarity=0.112 Sum_probs=79.6
Q ss_pred EEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHH-HHhcCCCC--CHHHHHHHHHHHHHcCCcEEEEEecCCCCCC
Q 008466 234 GMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDV-ARDTNRGH--TVAAVADCFCLAKDAGFKVVAHMMPDLPNVG 310 (564)
Q Consensus 234 eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~v-L~~i~Rgh--t~~~~~~ai~~lr~~G~~v~~~lI~GLPget 310 (564)
.++.-.|+. .+.++...++|+..|.+-+ +.++.- ...+|+.. .++.+.++++.+++.|+.+.+.++-+ +--+
T Consensus 66 ~i~~~~r~~---~~di~~a~~~g~~~i~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~-~r~~ 140 (365)
T TIGR02660 66 RLMAWCRAR---DADIEAAARCGVDAVHISI-PVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDA-SRAD 140 (365)
T ss_pred EEEEEcCCC---HHHHHHHHcCCcCEEEEEE-ccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCC-CCCC
Confidence 455555654 7889999999999999988 555544 44566542 33556689999999999988776654 3456
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 311 VERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 311 ~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
++.+.+.++.+. +.+++.|.+ +.|- | ..++++..+++..+.+.++
T Consensus 141 ~~~l~~~~~~~~---~~Ga~~i~l------~DT~-------G---~~~P~~v~~lv~~l~~~~~ 185 (365)
T TIGR02660 141 PDFLVELAEVAA---EAGADRFRF------ADTV-------G---ILDPFSTYELVRALRQAVD 185 (365)
T ss_pred HHHHHHHHHHHH---HcCcCEEEE------cccC-------C---CCCHHHHHHHHHHHHHhcC
Confidence 777777777776 467776543 3331 2 2467777777777776653
No 244
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=89.36 E-value=28 Score=35.69 Aligned_cols=110 Identities=21% Similarity=0.238 Sum_probs=75.8
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHcCCcEEEEEe---cCCCCCCHHHHHHHHH
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRG--HTVAAVADCFCLAKDAGFKVVAHMM---PDLPNVGVERDLESFR 319 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~lI---~GLPget~e~~~~t~~ 319 (564)
++..++.+.+.|++.|.+.+=+-+-...+.+|+. ..++.+.++++.+++.|+.+.+..+ -|. -.+++.+.+.++
T Consensus 80 ~~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~-~~~~~~~~~~~~ 158 (273)
T cd07941 80 EDPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGY-KANPEYALATLK 158 (273)
T ss_pred chHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccC-CCCHHHHHHHHH
Confidence 3457889999999998887644444455567665 5678888999999999999876433 222 345776777777
Q ss_pred HHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 320 EFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 320 ~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
.+. +.+++.|.+ ..|- | ..++++..+++..+++.+|
T Consensus 159 ~~~---~~g~~~i~l------~DT~-------G---~~~P~~v~~lv~~l~~~~~ 194 (273)
T cd07941 159 AAA---EAGADWLVL------CDTN-------G---GTLPHEIAEIVKEVRERLP 194 (273)
T ss_pred HHH---hCCCCEEEE------ecCC-------C---CCCHHHHHHHHHHHHHhCC
Confidence 776 467776543 2231 1 2567788888888888776
No 245
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=89.31 E-value=1.1 Score=41.65 Aligned_cols=48 Identities=15% Similarity=0.065 Sum_probs=39.8
Q ss_pred hhhcCHHHHHHHHHHHHHHhcCCCcEEEEec---CCCcHHHHhhCCCeeeC
Q 008466 509 LQHQGYGTLLMEEAERIALGEHRSRKMAVIS---GVGTRHYYRKLGYELEG 556 (564)
Q Consensus 509 ~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s---~~~a~~fY~klGy~~~g 556 (564)
.||+|||+..+...-.||....++.+..+.. +....+||+|++|...-
T Consensus 119 ~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk~~f~q~~ 169 (185)
T KOG4135|consen 119 GRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKKFLFTQVF 169 (185)
T ss_pred ccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHHhhheeee
Confidence 7999999999999999998866788876655 44558999999997643
No 246
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=89.26 E-value=23 Score=39.65 Aligned_cols=106 Identities=15% Similarity=0.100 Sum_probs=76.5
Q ss_pred eeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEE--EecCCCCCCHHHHHH
Q 008466 239 TRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAH--MMPDLPNVGVERDLE 316 (564)
Q Consensus 239 trPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~--lI~GLPget~e~~~~ 316 (564)
.-||.+-+..++...+.|++.+.|.. +.||- +....+++.++++|..+... ++. -|-.|.+.+.+
T Consensus 93 ~y~ddvv~~fv~~a~~~Gidi~RIfd-~lndv-----------~nl~~ai~~vk~ag~~~~~~i~yt~-sp~~t~e~~~~ 159 (499)
T PRK12330 93 HYEDEVVDRFVEKSAENGMDVFRVFD-ALNDP-----------RNLEHAMKAVKKVGKHAQGTICYTV-SPIHTVEGFVE 159 (499)
T ss_pred CcchhHHHHHHHHHHHcCCCEEEEEe-cCChH-----------HHHHHHHHHHHHhCCeEEEEEEEec-CCCCCHHHHHH
Confidence 35888889999999999998777754 23332 67778899999999876433 333 37789998889
Q ss_pred HHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCc
Q 008466 317 SFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPW 376 (564)
Q Consensus 317 t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~ 376 (564)
.++.+. +.+++.|.|- .| .| .+++++..+++..+++.+|+.
T Consensus 160 ~a~~l~---~~Gad~I~Ik------Dt-------aG---ll~P~~~~~LV~~Lk~~~~~~ 200 (499)
T PRK12330 160 QAKRLL---DMGADSICIK------DM-------AA---LLKPQPAYDIVKGIKEACGED 200 (499)
T ss_pred HHHHHH---HcCCCEEEeC------CC-------cc---CCCHHHHHHHHHHHHHhCCCC
Confidence 888887 4678876542 23 12 356788888888888887644
No 247
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=89.18 E-value=25 Score=39.10 Aligned_cols=103 Identities=18% Similarity=0.221 Sum_probs=75.2
Q ss_pred eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEE--EEecCCCCCCHHHHHHH
Q 008466 240 RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA--HMMPDLPNVGVERDLES 317 (564)
Q Consensus 240 rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~--~lI~GLPget~e~~~~t 317 (564)
.||.+-+..++...+.|++.+.+-. +.|+ .+.+..+++.+++.|..+.. +...+ |-.|.+.+.+.
T Consensus 92 ~~dDvv~~fv~~A~~~Gvd~irif~-~lnd-----------~~n~~~~i~~ak~~G~~v~~~i~~t~~-p~~t~e~~~~~ 158 (467)
T PRK14041 92 YADDVVELFVKKVAEYGLDIIRIFD-ALND-----------IRNLEKSIEVAKKHGAHVQGAISYTVS-PVHTLEYYLEF 158 (467)
T ss_pred ccchhhHHHHHHHHHCCcCEEEEEE-eCCH-----------HHHHHHHHHHHHHCCCEEEEEEEeccC-CCCCHHHHHHH
Confidence 5777777789999999999888876 5555 35678889999999998663 44455 77888888888
Q ss_pred HHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 318 FREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 318 ~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
++.+. +.++|.|.+- .| .| ..++.+..+++..+++.++
T Consensus 159 a~~l~---~~Gad~I~i~------Dt-------~G---~l~P~~v~~Lv~~lk~~~~ 196 (467)
T PRK14041 159 ARELV---DMGVDSICIK------DM-------AG---LLTPKRAYELVKALKKKFG 196 (467)
T ss_pred HHHHH---HcCCCEEEEC------Cc-------cC---CcCHHHHHHHHHHHHHhcC
Confidence 88886 4677876542 23 12 2456777777777777654
No 248
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=89.09 E-value=15 Score=37.54 Aligned_cols=146 Identities=10% Similarity=0.138 Sum_probs=84.2
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCc------hhhHHHhhhcccCCccc
Q 008466 160 NPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTS------ANVEEAVTYSEHGATKC 232 (564)
Q Consensus 160 ~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~------~~l~e~~~~~~~~~~~~ 232 (564)
..+..++.+..++.+.| ...| ++++++..-..+.+.++++.+.+..+..++ .-+++|++.-. +
T Consensus 22 ~d~~~i~~~A~~~~~~G-----AdiIDVg~~~~~~eE~~r~~~~v~~l~~~~~~plsIDT~~~~v~eaaL~~~~-G---- 91 (261)
T PRK07535 22 KDAAFIQKLALKQAEAG-----ADYLDVNAGTAVEEEPETMEWLVETVQEVVDVPLCIDSPNPAAIEAGLKVAK-G---- 91 (261)
T ss_pred CCHHHHHHHHHHHHHCC-----CCEEEECCCCCchhHHHHHHHHHHHHHHhCCCCEEEeCCCHHHHHHHHHhCC-C----
Confidence 44556666666667777 5667 677765444456777788888765432121 22455554311 1
Q ss_pred EEEEEEeeCCC-CCHHHHHHHHHcCCCeEEEcc--CCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCC---cEEEEEecCC
Q 008466 233 IGMTIETRPDY-CLGPHLRQMLSYGCTRLEIGV--QSTYEDVARDTNRGHTVAAVADCFCLAKDAGF---KVVAHMMPDL 306 (564)
Q Consensus 233 ~eitiEtrPd~-i~~e~L~~L~~~G~~rvsiGv--QS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~---~v~~~lI~GL 306 (564)
..+-=..+... -.++.+..++++|+.-|-+-. +......-+ ..+...+.++.+.++|+ ++..|-.+|.
T Consensus 92 ~~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~------~~~~l~~~v~~a~~~GI~~~~IilDPgi~~ 165 (261)
T PRK07535 92 PPLINSVSAEGEKLEVVLPLVKKYNAPVVALTMDDTGIPKDAED------RLAVAKELVEKADEYGIPPEDIYIDPLVLP 165 (261)
T ss_pred CCEEEeCCCCCccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHH------HHHHHHHHHHHHHHcCCCHhHEEEeCCCCc
Confidence 11111112211 145778888999987775543 222211111 14566777888999999 5888999997
Q ss_pred CCCCHHHHHHHHHHH
Q 008466 307 PNVGVERDLESFREF 321 (564)
Q Consensus 307 Pget~e~~~~t~~~~ 321 (564)
.|.+.+...++++.+
T Consensus 166 ~~~~~~~~~~~l~~i 180 (261)
T PRK07535 166 LSAAQDAGPEVLETI 180 (261)
T ss_pred ccCChHHHHHHHHHH
Confidence 777766664444444
No 249
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=89.04 E-value=8.8 Score=39.75 Aligned_cols=111 Identities=17% Similarity=0.152 Sum_probs=78.6
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHcCCcEEEEEe--cCCCCC---CHHHHHHH
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRG--HTVAAVADCFCLAKDAGFKVVAHMM--PDLPNV---GVERDLES 317 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~lI--~GLPge---t~e~~~~t 317 (564)
+.+.++...++|+++|.+-+-+.+....+.+++. ...+.+.++++.+++.|+.+...+. +|.|.+ +++.+.+.
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~ 160 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADV 160 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHH
Confidence 5778899999999999998744433344455554 2345688899999999999876555 577776 67777777
Q ss_pred HHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 318 FREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 318 ~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
++.+. +.++|.|.+- .|- | ..++.+..+++..+++.+|
T Consensus 161 ~~~~~---~~G~d~i~l~------DT~-------G---~~~P~~v~~lv~~l~~~~~ 198 (287)
T PRK05692 161 AERLF---ALGCYEISLG------DTI-------G---VGTPGQVRAVLEAVLAEFP 198 (287)
T ss_pred HHHHH---HcCCcEEEec------ccc-------C---ccCHHHHHHHHHHHHHhCC
Confidence 77776 4678876542 331 1 2467788888888887765
No 250
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=88.94 E-value=2.2 Score=43.44 Aligned_cols=114 Identities=16% Similarity=0.116 Sum_probs=76.4
Q ss_pred EEEEEEeeCCCC-CHHHHHHHHHcCCCeEEEccCCC---------CHHHHHhcCCCCCHHHHHHHHHHHHHc--CCcEEE
Q 008466 233 IGMTIETRPDYC-LGPHLRQMLSYGCTRLEIGVQST---------YEDVARDTNRGHTVAAVADCFCLAKDA--GFKVVA 300 (564)
Q Consensus 233 ~eitiEtrPd~i-~~e~L~~L~~~G~~rvsiGvQS~---------~d~vL~~i~Rght~~~~~~ai~~lr~~--G~~v~~ 300 (564)
+.+-.-..||.= +.+.+..|.+.|++.|+||+=.. .....+.+..|.|++++.+.++.+++. .+++.
T Consensus 13 i~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv- 91 (256)
T TIGR00262 13 IPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG- 91 (256)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-
Confidence 334444467632 46778899999999999999432 233456678899999999999999975 56665
Q ss_pred EEecCCC--CCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCC
Q 008466 301 HMMPDLP--NVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGR 353 (564)
Q Consensus 301 ~lI~GLP--get~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~ 353 (564)
+||+--| .-..+++.+.+. +.+++.+-++.+.+..-..+.+.+++..
T Consensus 92 ~m~Y~Npi~~~G~e~f~~~~~------~aGvdgviipDlp~ee~~~~~~~~~~~g 140 (256)
T TIGR00262 92 LLTYYNLIFRKGVEEFYAKCK------EVGVDGVLVADLPLEESGDLVEAAKKHG 140 (256)
T ss_pred EEEeccHHhhhhHHHHHHHHH------HcCCCEEEECCCChHHHHHHHHHHHHCC
Confidence 8888755 223455555444 4578999888765544344444444443
No 251
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=88.84 E-value=1.3 Score=41.51 Aligned_cols=29 Identities=10% Similarity=0.211 Sum_probs=21.2
Q ss_pred EEEE-EEcCCCCCCC-HHHHHHHHHHHHHHh
Q 008466 182 VEFI-LMGGTFMSLP-ADYRDYFIRNLHDAL 210 (564)
Q Consensus 182 ve~I-~~GGTpt~l~-~~~l~~ll~~l~~~~ 210 (564)
+..| |.||.|+..+ .+.+.++++.+++.+
T Consensus 64 ~~gVt~sGGEPllq~~~~~l~~ll~~~k~~~ 94 (154)
T TIGR02491 64 IDGLTLSGGDPLYPRNVEELIELVKKIKAEF 94 (154)
T ss_pred cCeEEEeChhhCCCCCHHHHHHHHHHHHHhC
Confidence 4445 7899998753 477888888887654
No 252
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=88.74 E-value=0.98 Score=45.76 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=77.5
Q ss_pred EEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCc---EEEEEecCCCCCC
Q 008466 234 GMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFK---VVAHMMPDLPNVG 310 (564)
Q Consensus 234 eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~---v~~~lI~GLPget 310 (564)
.+-|+++-- +....+-.+.++|.+.+.+.+.|....-...+-|..+...+...++++.+.|.. +++-.|=|+-+..
T Consensus 91 s~~ITtng~-vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~lgy~pvkvn~v~~k~~n~~e 169 (323)
T KOG2876|consen 91 SIGITTNGL-VLARLLPQLHKAGLSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIELGYNPVKVNCVVMKGLNEDE 169 (323)
T ss_pred hhceeccch-hhhhhhhHHHhhcccchhhhhhhhhHHHHHHHhhhccHHHHHHHHhHHhhhCCCCcceeeEEEeccCCCc
Confidence 455555433 667889999999999999999999999999999999999999999999988874 5677888886543
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCCh
Q 008466 311 VERDLESFREFFESPLFRADGLKIYPTLVIRGTG 344 (564)
Q Consensus 311 ~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~ 344 (564)
.- +++. ..+.+|-.+.+-.+++.-|..
T Consensus 170 v~------Dfv~-~tr~~p~DVrfIe~mpf~gn~ 196 (323)
T KOG2876|consen 170 VF------DFVL-LTRMRPLDVRFIEFMPFDGNK 196 (323)
T ss_pred cc------ceee-ecCCCCcceEEEEecccCCCc
Confidence 32 2222 124566677777777777764
No 253
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=88.52 E-value=37 Score=37.52 Aligned_cols=104 Identities=16% Similarity=0.153 Sum_probs=74.7
Q ss_pred eeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEE--EEecCCCCCCHHHHHH
Q 008466 239 TRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA--HMMPDLPNVGVERDLE 316 (564)
Q Consensus 239 trPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~--~lI~GLPget~e~~~~ 316 (564)
..||.+..+.++...+.|++.|.+-. +.|+- ..+.++++.+++.|+.+.. ....+ |--+.+.+.+
T Consensus 92 ~~pddvv~~~v~~A~~~Gvd~irif~-~lnd~-----------~n~~~~v~~ak~~G~~v~~~i~~t~~-p~~~~~~~~~ 158 (448)
T PRK12331 92 NYADDVVESFVQKSVENGIDIIRIFD-ALNDV-----------RNLETAVKATKKAGGHAQVAISYTTS-PVHTIDYFVK 158 (448)
T ss_pred cCchhhHHHHHHHHHHCCCCEEEEEE-ecCcH-----------HHHHHHHHHHHHcCCeEEEEEEeecC-CCCCHHHHHH
Confidence 36888889999999999999888876 44443 2467789999999988553 44445 7778888888
Q ss_pred HHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 317 SFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 317 t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
.++.+. +.++|.|.+- .| -| ..++.+..+++..+++.++
T Consensus 159 ~a~~l~---~~Gad~I~i~------Dt-------~G---~l~P~~v~~lv~alk~~~~ 197 (448)
T PRK12331 159 LAKEMQ---EMGADSICIK------DM-------AG---ILTPYVAYELVKRIKEAVT 197 (448)
T ss_pred HHHHHH---HcCCCEEEEc------CC-------CC---CCCHHHHHHHHHHHHHhcC
Confidence 888886 5678876553 22 12 2556777777777777654
No 254
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=88.38 E-value=1.8 Score=39.26 Aligned_cols=83 Identities=23% Similarity=0.370 Sum_probs=50.8
Q ss_pred CCCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHH
Q 008466 447 NEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIA 526 (564)
Q Consensus 447 ~gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A 526 (564)
.++..+|.+-=+ |.|+|.+.+.... ..+ +|+ -+.|.+- -|++|+|..|++++.+.+
T Consensus 35 ~~~~~l~aArFN---dRlLgAv~v~~~~----------~~~---~L~----~l~VRev----TRrRGVG~yLlee~~rq~ 90 (128)
T PF12568_consen 35 DEGHRLFAARFN---DRLLGAVKVTISG----------QQA---ELS----DLCVREV----TRRRGVGLYLLEEVLRQL 90 (128)
T ss_dssp -SSEEEEEEEET---TEEEEEEEEEEET----------TEE---EEE----EEEE-TT-----SSSSHHHHHHHHHHHHS
T ss_pred ccCCeEEEEEec---hheeeeEEEEEcC----------cce---EEe----eEEEeec----cccccHHHHHHHHHHHHC
Confidence 345777888554 7999999999765 121 221 1235655 699999999999998887
Q ss_pred HhcCCCcEEEEec-CCC------cHHHHhhCCCeeeC
Q 008466 527 LGEHRSRKMAVIS-GVG------TRHYYRKLGYELEG 556 (564)
Q Consensus 527 ~~~~g~~~i~~~s-~~~------a~~fY~klGy~~~g 556 (564)
. .++...+.. +.. ...|-..+||...+
T Consensus 91 p---~i~~w~l~~~~~~~~~~~~~~~Fm~a~GF~~~~ 124 (128)
T PF12568_consen 91 P---DIKHWWLADEGVEPQDRAVMAAFMQACGFSAQS 124 (128)
T ss_dssp ----S--EEEE--TT-S--THHHHHHHHHHHT-EE-S
T ss_pred C---CCcEEEEecCCCcccchHHHHHHHHHcCccccC
Confidence 4 466665553 222 25799999997654
No 255
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=88.33 E-value=13 Score=37.30 Aligned_cols=81 Identities=16% Similarity=0.234 Sum_probs=54.8
Q ss_pred EEEEEe-eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHH
Q 008466 234 GMTIET-RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVE 312 (564)
Q Consensus 234 eitiEt-rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e 312 (564)
.+-+.+ +|+ ..++.+.++|++.|.+=+|+..+ +..+.++.+|++|++...=+=++-|- +
T Consensus 63 DvHLMv~~P~----~~i~~~~~aGad~it~H~Ea~~~-------------~~~~~i~~Ik~~G~kaGlalnP~T~~---~ 122 (229)
T PRK09722 63 DVHLMVTDPQ----DYIDQLADAGADFITLHPETING-------------QAFRLIDEIRRAGMKVGLVLNPETPV---E 122 (229)
T ss_pred EEEEEecCHH----HHHHHHHHcCCCEEEECccCCcc-------------hHHHHHHHHHHcCCCEEEEeCCCCCH---H
Confidence 444553 675 78999999999999999997532 24467889999999988777655443 3
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEeeeeecCCCh
Q 008466 313 RDLESFREFFESPLFRADGLKIYPTLVIRGTG 344 (564)
Q Consensus 313 ~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~ 344 (564)
. +..++. .+|.|-+. ++.||..
T Consensus 123 ~----l~~~l~----~vD~VLvM--sV~PGf~ 144 (229)
T PRK09722 123 S----IKYYIH----LLDKITVM--TVDPGFA 144 (229)
T ss_pred H----HHHHHH----hcCEEEEE--EEcCCCc
Confidence 2 223321 15766554 5677764
No 256
>PRK08005 epimerase; Validated
Probab=87.73 E-value=8.6 Score=38.02 Aligned_cols=120 Identities=14% Similarity=0.102 Sum_probs=73.4
Q ss_pred EEEEEe-eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHH
Q 008466 234 GMTIET-RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVE 312 (564)
Q Consensus 234 eitiEt-rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e 312 (564)
.+-+.+ +|+ ..++.+.++|++.|++=+|+.. +..++++.+|+.|.+...=+=++-|-+..+
T Consensus 62 DvHLMv~~P~----~~i~~~~~~gad~It~H~Ea~~--------------~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~ 123 (210)
T PRK08005 62 SFHLMVSSPQ----RWLPWLAAIRPGWIFIHAESVQ--------------NPSEILADIRAIGAKAGLALNPATPLLPYR 123 (210)
T ss_pred EEEeccCCHH----HHHHHHHHhCCCEEEEcccCcc--------------CHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 344443 665 6899999999999999999651 345688899999999887776664433222
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHH
Q 008466 313 RDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVT 392 (564)
Q Consensus 313 ~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~ 392 (564)
.++. .+|.|-+ +++.||..=.. | ..+..+.+.++.++.+.. -++ +.
T Consensus 124 -------~~l~----~vD~Vlv--MsV~PGf~GQ~------f----~~~~~~KI~~l~~~~~~~----~I~-------VD 169 (210)
T PRK08005 124 -------YLAL----QLDALMI--MTSEPDGRGQQ------F----IAAMCEKVSQSREHFPAA----ECW-------AD 169 (210)
T ss_pred -------HHHH----hcCEEEE--EEecCCCccce------e----cHHHHHHHHHHHHhcccC----CEE-------EE
Confidence 2221 2576655 46788875221 2 234455555555555431 133 33
Q ss_pred hCCCcchHHHHHH
Q 008466 393 SGVEKGNLRELAL 405 (564)
Q Consensus 393 ~G~~~~~~~~~a~ 405 (564)
.|+...++.+++.
T Consensus 170 GGI~~~~i~~l~~ 182 (210)
T PRK08005 170 GGITLRAARLLAA 182 (210)
T ss_pred CCCCHHHHHHHHH
Confidence 4566666665553
No 257
>PRK15452 putative protease; Provisional
Probab=87.06 E-value=4.1 Score=44.85 Aligned_cols=84 Identities=15% Similarity=0.154 Sum_probs=61.9
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCC-CHHHHHHHHHHHhc
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNV-GVERDLESFREFFE 323 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPge-t~e~~~~t~~~~~~ 323 (564)
+.+.|+...++|.+.|.+|.++++-+.. ....+.+++.++++.+++.|.++.+ .+.-+|.+ ..+.+.+.++.+.
T Consensus 12 ~~e~l~aAi~~GADaVY~G~~~~~~R~~---~~~f~~edl~eav~~ah~~g~kvyv-t~n~i~~e~el~~~~~~l~~l~- 86 (443)
T PRK15452 12 TLKNMRYAFAYGADAVYAGQPRYSLRVR---NNEFNHENLALGINEAHALGKKFYV-VVNIAPHNAKLKTFIRDLEPVI- 86 (443)
T ss_pred CHHHHHHHHHCCCCEEEECCCccchhhh---ccCCCHHHHHHHHHHHHHcCCEEEE-EecCcCCHHHHHHHHHHHHHHH-
Confidence 6789999999999999999999887652 3567889999999999999988654 23344554 3344555555554
Q ss_pred CCCCCCCeEEEe
Q 008466 324 SPLFRADGLKIY 335 (564)
Q Consensus 324 ~~~l~pd~i~iy 335 (564)
.+++|.|-+.
T Consensus 87 --~~gvDgvIV~ 96 (443)
T PRK15452 87 --AMKPDALIMS 96 (443)
T ss_pred --hCCCCEEEEc
Confidence 4667776554
No 258
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=87.05 E-value=8.1 Score=38.74 Aligned_cols=80 Identities=11% Similarity=0.123 Sum_probs=53.1
Q ss_pred EEEEEe-eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCC--cEEEEEecCCCCCC
Q 008466 234 GMTIET-RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGF--KVVAHMMPDLPNVG 310 (564)
Q Consensus 234 eitiEt-rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~--~v~~~lI~GLPget 310 (564)
.+-+.+ +|+ +.++.+.++|++.|++=+|+. .+..++++.+|+.|. +...-+=++ ..
T Consensus 72 DvHLMv~~P~----~~i~~~~~aGad~It~H~Ea~--------------~~~~~~l~~Ik~~g~~~kaGlalnP~---Tp 130 (228)
T PRK08091 72 DVHLMVRDQF----EVAKACVAAGADIVTLQVEQT--------------HDLALTIEWLAKQKTTVLIGLCLCPE---TP 130 (228)
T ss_pred EEEeccCCHH----HHHHHHHHhCCCEEEEcccCc--------------ccHHHHHHHHHHCCCCceEEEEECCC---CC
Confidence 444443 664 789999999999999999974 135678889999999 655555444 33
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCCh
Q 008466 311 VERDLESFREFFESPLFRADGLKIYPTLVIRGTG 344 (564)
Q Consensus 311 ~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~ 344 (564)
.+.+ ..++. .+|.|-+. ++.||..
T Consensus 131 ~~~i----~~~l~----~vD~VLiM--tV~PGfg 154 (228)
T PRK08091 131 ISLL----EPYLD----QIDLIQIL--TLDPRTG 154 (228)
T ss_pred HHHH----HHHHh----hcCEEEEE--EECCCCC
Confidence 4433 23321 15776664 6677753
No 259
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=86.56 E-value=0.89 Score=52.70 Aligned_cols=50 Identities=22% Similarity=0.204 Sum_probs=41.0
Q ss_pred ccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEecC--CCcHHHHhhCCCeeeC
Q 008466 501 VHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISG--VGTRHYYRKLGYELEG 556 (564)
Q Consensus 501 v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~--~~a~~fY~klGy~~~g 556 (564)
||.+ +|++|||++|++.+.++|++ |++-+.+.-+ ....+|..|.||.+..
T Consensus 539 vhPe----~q~~GiGsrlL~~l~~~a~~--~~DwlgvsFG~t~~L~rFW~rnGF~pVh 590 (758)
T COG1444 539 VHPE----LQRMGIGSRLLALLIEEARK--GLDWLGVSFGYTEELLRFWLRNGFVPVH 590 (758)
T ss_pred eCHH----HHhcCHHHHHHHHHHHHHhc--CCCEEeeccCCCHHHHHHHHHcCeEEEE
Confidence 6766 99999999999999999984 7887766533 3458999999998843
No 260
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=86.22 E-value=0.97 Score=47.56 Aligned_cols=49 Identities=22% Similarity=0.267 Sum_probs=40.7
Q ss_pred hhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEecCCCcHHHHhhCCCeeeCce
Q 008466 507 DKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPY 558 (564)
Q Consensus 507 ~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~~g~~ 558 (564)
..|||+|.-++||.+.-+-.+++ |+.-..++.. ..+||+|+||+..+.|
T Consensus 80 P~~R~~G~~~~Ll~~sLre~~~k-G~p~s~L~P~--s~~iYrKfGye~asn~ 128 (389)
T COG4552 80 PTYRRRGALRALLAHSLREIARK-GYPVSALHPF--SGGIYRKFGYEYASNY 128 (389)
T ss_pred hhhccCcHHHHHHHHHHHHHHHc-CCeeEEeccC--chhhHhhccccccceE
Confidence 44999999999999999999985 9888777543 3579999999987753
No 261
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=85.79 E-value=19 Score=35.88 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCC
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESP 325 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~ 325 (564)
+..++.+.++|++.|++=+|+. .+..++++.+|++|++...-+=++-|-+..+ .++.
T Consensus 75 ~~~i~~~~~~gad~I~~H~Ea~--------------~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~-------~~l~-- 131 (223)
T PRK08745 75 DRIVPDFADAGATTISFHPEAS--------------RHVHRTIQLIKSHGCQAGLVLNPATPVDILD-------WVLP-- 131 (223)
T ss_pred HHHHHHHHHhCCCEEEEcccCc--------------ccHHHHHHHHHHCCCceeEEeCCCCCHHHHH-------HHHh--
Confidence 3689999999999999999973 1356788899999999887776554433322 2221
Q ss_pred CCCCCeEEEeeeeecCCCh
Q 008466 326 LFRADGLKIYPTLVIRGTG 344 (564)
Q Consensus 326 ~l~pd~i~iy~l~v~~GT~ 344 (564)
.+|.|-+ +++.||..
T Consensus 132 --~vD~Vlv--MtV~PGf~ 146 (223)
T PRK08745 132 --ELDLVLV--MSVNPGFG 146 (223)
T ss_pred --hcCEEEE--EEECCCCC
Confidence 2576655 46778864
No 262
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=84.77 E-value=2.8 Score=39.28 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=17.5
Q ss_pred EEE-EEcCCCCCC-CHHHHHHHHHHHHHHh
Q 008466 183 EFI-LMGGTFMSL-PADYRDYFIRNLHDAL 210 (564)
Q Consensus 183 e~I-~~GGTpt~l-~~~~l~~ll~~l~~~~ 210 (564)
..| |.||.|+.- ..+.+.++++.+++.+
T Consensus 67 ~gvt~sGGEPl~~~~~~~l~~l~~~~k~~~ 96 (154)
T PRK11121 67 QGLSLSGGDPLHPQNVPDILKLVQRVKAEC 96 (154)
T ss_pred CcEEEECCCccchhhHHHHHHHHHHHHHHC
Confidence 445 789999642 2356666667666554
No 263
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=83.79 E-value=28 Score=36.10 Aligned_cols=39 Identities=8% Similarity=0.100 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHcCC---cEEEEEecCCCCCCHHHHHHHHHHHh
Q 008466 283 AVADCFCLAKDAGF---KVVAHMMPDLPNVGVERDLESFREFF 322 (564)
Q Consensus 283 ~~~~ai~~lr~~G~---~v~~~lI~GLPget~e~~~~t~~~~~ 322 (564)
.+.+.++.+.++|+ ++..|--+|+ +.+.+..++.++.+-
T Consensus 164 ~l~~~i~~a~~~GI~~~~IilDPGiGF-~k~~~~n~~ll~~l~ 205 (282)
T PRK11613 164 YFIEQIARCEAAGIAKEKLLLDPGFGF-GKNLSHNYQLLARLA 205 (282)
T ss_pred HHHHHHHHHHHcCCChhhEEEeCCCCc-CCCHHHHHHHHHHHH
Confidence 44577788999999 5788887888 677776666666553
No 264
>PRK09389 (R)-citramalate synthase; Provisional
Probab=83.64 E-value=80 Score=35.31 Aligned_cols=119 Identities=14% Similarity=0.137 Sum_probs=79.2
Q ss_pred EEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHcCCcEEEEEecCCCCCC
Q 008466 233 IGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRG--HTVAAVADCFCLAKDAGFKVVAHMMPDLPNVG 310 (564)
Q Consensus 233 ~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~lI~GLPget 310 (564)
..+..-+|+- .+.++...++|+.+|.+-+=+-+-.....+++. ...+.+.++++.+++.|+.+.++++-+ +-.+
T Consensus 66 ~~i~a~~r~~---~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~-~r~~ 141 (488)
T PRK09389 66 AEICSFARAV---KVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDA-SRAD 141 (488)
T ss_pred cEEEeecccC---HHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeC-CCCC
Confidence 3555555542 667999999999999998844433334455543 344677788889999999988887754 4556
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 311 VERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 311 ~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
++-+.+.++.+. +.+++.|.+ +.|- | ..++++..+++..+....+
T Consensus 142 ~~~l~~~~~~~~---~~Ga~~i~l------~DTv-------G---~~~P~~~~~lv~~l~~~~~ 186 (488)
T PRK09389 142 LDFLKELYKAGI---EAGADRICF------CDTV-------G---ILTPEKTYELFKRLSELVK 186 (488)
T ss_pred HHHHHHHHHHHH---hCCCCEEEE------ecCC-------C---CcCHHHHHHHHHHHHhhcC
Confidence 776777777776 467887654 3331 1 2456677777766666543
No 265
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=83.61 E-value=2 Score=43.75 Aligned_cols=51 Identities=20% Similarity=0.288 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHHHhcCCCcEEEEecCCCcHHHHhhCCCeeeCc-----------eEeeecC
Q 008466 513 GYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGP-----------YMVKYLE 564 (564)
Q Consensus 513 GiG~~Lm~~aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~~g~-----------~m~K~l~ 564 (564)
|-...|++.+++.|++ +|+.+|.+.........|++.||..+|. +|+|.|+
T Consensus 21 ~~~~~~~~~~~~~a~~-~~~~ki~~~~~~~~~~~~~~~g~~~e~~i~~~f~g~~~~~~~~~~~ 82 (266)
T TIGR03827 21 NDVEALIPDLDALAKK-EGYTKIIAKVPGSDKPLFEERGYLEEAKIPGYFNGHDAYFMSKYLD 82 (266)
T ss_pred ccHHHHHHHHHHHHHH-cCCcEEEEEccHHHHHHHHHCCCeEEEecccccCCCceEEEEEcCc
Confidence 4467899999999999 5999998888778899999999999862 7887663
No 266
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=83.56 E-value=26 Score=34.90 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=56.1
Q ss_pred EEEEEe-eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHH
Q 008466 234 GMTIET-RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVE 312 (564)
Q Consensus 234 eitiEt-rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e 312 (564)
.+-+.+ +|+ ..++.+.++|++.|++=+|+. .+..+.++.+|+.|++.+.-+=++-|-+..+
T Consensus 62 dvHLMv~~p~----~~i~~~~~~gad~i~~H~Ea~--------------~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~ 123 (220)
T PRK08883 62 DVHLMVKPVD----RIIPDFAKAGASMITFHVEAS--------------EHVDRTLQLIKEHGCQAGVVLNPATPLHHLE 123 (220)
T ss_pred EEEeccCCHH----HHHHHHHHhCCCEEEEcccCc--------------ccHHHHHHHHHHcCCcEEEEeCCCCCHHHHH
Confidence 344443 664 789999999999999999974 2356788899999999887776655433322
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEeeeeecCCChh
Q 008466 313 RDLESFREFFESPLFRADGLKIYPTLVIRGTGL 345 (564)
Q Consensus 313 ~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L 345 (564)
.++. .+|.|-+. ++.||+.-
T Consensus 124 -------~~l~----~~D~vlvM--tV~PGfgG 143 (220)
T PRK08883 124 -------YIMD----KVDLILLM--SVNPGFGG 143 (220)
T ss_pred -------HHHH----hCCeEEEE--EecCCCCC
Confidence 2221 25777664 67888753
No 267
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=82.80 E-value=44 Score=36.63 Aligned_cols=110 Identities=10% Similarity=0.035 Sum_probs=73.1
Q ss_pred EEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCC--CHHHHHHHHHcCCCe
Q 008466 183 EFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYC--LGPHLRQMLSYGCTR 259 (564)
Q Consensus 183 e~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i--~~e~L~~L~~~G~~r 259 (564)
..| |.||.||.. +.+-++++...+.-- .-+++.||--.+ +++..+.|+++|.+.
T Consensus 112 ~aIq~tGGEPTvr--~DL~eiv~~a~e~g~---------------------~hVqinTnGirlA~~~~~~~~l~~ag~~t 168 (475)
T COG1964 112 NAVQFTGGEPTLR--DDLIEIIKIAREEGY---------------------DHVQLNTNGIRLAFDPEYVKKLREAGVNT 168 (475)
T ss_pred ceeEecCCCccch--hhHHHHHHHHhhcCc---------------------cEEEEccCceeeccCHHHHHHHHhcCCcE
Confidence 445 789999874 345556665554221 234555543222 578999999999999
Q ss_pred EEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCc-EE--EEEecCCCCCCHHHHHHHHHHHhc
Q 008466 260 LEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFK-VV--AHMMPDLPNVGVERDLESFREFFE 323 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~-v~--~~lI~GLPget~e~~~~t~~~~~~ 323 (564)
|-+-....+++.+..+ .-++-.+++.++++|+. ++ --++=|+- ....-..+++..+
T Consensus 169 vYlsFDG~~e~~~~~~-----~~eIk~alen~r~~g~~svVLVptl~rgvN---d~~lG~iirfa~~ 227 (475)
T COG1964 169 VYLSFDGVTPKTNWKN-----HWEIKQALENCRKAGLPSVVLVPTLIRGVN---DHELGAIIRFALN 227 (475)
T ss_pred EEEecCCCCCCchhhH-----hhhhHHHHHHHHhcCCCcEEEEeehhcccC---hHHHHHHHHHHHh
Confidence 9999999999886665 45666799999999987 43 25555552 2223344555543
No 268
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=82.20 E-value=23 Score=36.12 Aligned_cols=149 Identities=14% Similarity=0.099 Sum_probs=74.9
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCC---C---CCHHH---HHHHHHHHHHHhcCCCc------hhhHHHhhh
Q 008466 160 NPYVQARSRIDQLKRLGHSVDKVEFILMGGTFM---S---LPADY---RDYFIRNLHDALSGHTS------ANVEEAVTY 224 (564)
Q Consensus 160 ~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt---~---l~~~~---l~~ll~~l~~~~~~~~~------~~l~e~~~~ 224 (564)
-.+.+++.+..++.+.| ...|=.||..| . -+.+. +.++++.+.+.++...+ .-+++|++.
T Consensus 21 ~~~~~~~~~a~~~~~~G-----AdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~~~~v~e~al~~ 95 (257)
T cd00739 21 LSLDKAVAHAEKMIAEG-----ADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVDTFRAEVARAALEA 95 (257)
T ss_pred CCHHHHHHHHHHHHHCC-----CCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCCCHHHHHHHHHh
Confidence 44677777777777877 55663444222 1 12333 33456666554331111 124555543
Q ss_pred cccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCC-----CHHHHHHHHHHHHHcCC---
Q 008466 225 SEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGH-----TVAAVADCFCLAKDAGF--- 296 (564)
Q Consensus 225 ~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rgh-----t~~~~~~ai~~lr~~G~--- 296 (564)
. ..+=-.+..-+ .+++.+..++++|+.-|-+-.+..+..... ...-. -.+.+.+.++.++++|+
T Consensus 96 G-----~~iINdisg~~--~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~ 167 (257)
T cd00739 96 G-----ADIINDVSGGS--DDPAMLEVAAEYGAPLVLMHMRGTPKTMQE-NPYYEDVVDEVLSFLEARLEAAESAGVARN 167 (257)
T ss_pred C-----CCEEEeCCCCC--CChHHHHHHHHcCCCEEEECCCCCCccccc-CCCcccHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 1 01111122112 125677777778776666544322211100 00000 11335566777889999
Q ss_pred cEEEEEecCCCCCCHHHHHHHHHHHh
Q 008466 297 KVVAHMMPDLPNVGVERDLESFREFF 322 (564)
Q Consensus 297 ~v~~~lI~GLPget~e~~~~t~~~~~ 322 (564)
++..|-.+|+ +.+.+...+.++.+.
T Consensus 168 ~Ii~DPg~gf-~ks~~~~~~~l~~i~ 192 (257)
T cd00739 168 RIILDPGIGF-GKTPEHNLELLRRLD 192 (257)
T ss_pred HEEEecCCCc-ccCHHHHHHHHHHHH
Confidence 5788988886 555665566665553
No 269
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=82.13 E-value=5.1 Score=39.62 Aligned_cols=24 Identities=21% Similarity=0.113 Sum_probs=15.1
Q ss_pred EEE-EEcCCCCCCCHHHHHHHHHHHHH
Q 008466 183 EFI-LMGGTFMSLPADYRDYFIRNLHD 208 (564)
Q Consensus 183 e~I-~~GGTpt~l~~~~l~~ll~~l~~ 208 (564)
..| +.||.| +-...+..|++.+++
T Consensus 73 ~~V~lTGGEP--~~~~~l~~Ll~~l~~ 97 (212)
T COG0602 73 RGVSLTGGEP--LLQPNLLELLELLKR 97 (212)
T ss_pred ceEEEeCCcC--CCcccHHHHHHHHHh
Confidence 355 789999 333345566776664
No 270
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=82.10 E-value=9.6 Score=39.35 Aligned_cols=110 Identities=10% Similarity=0.075 Sum_probs=76.3
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHcCCcEEEEEe-cCCC-CCCHHHHHHHHHHH
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRG--HTVAAVADCFCLAKDAGFKVVAHMM-PDLP-NVGVERDLESFREF 321 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~lI-~GLP-get~e~~~~t~~~~ 321 (564)
...++..+++|+++|.+.+=+.+....+.+|+. ...+++.++++.+++.|+.+.+.++ +|-| --+++.+.+.++.+
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~ 156 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFL 156 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 457999999999999999944444445566664 3456778899999999999887665 3333 34677777777777
Q ss_pred hcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 322 FESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 322 ~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
. +.+++.|.+- .|- | ..++++..+++..++..+|
T Consensus 157 ~---~~G~~~i~l~------DT~-------G---~~~P~~v~~l~~~l~~~~~ 190 (280)
T cd07945 157 S---DLPIKRIMLP------DTL-------G---ILSPFETYTYISDMVKRYP 190 (280)
T ss_pred H---HcCCCEEEec------CCC-------C---CCCHHHHHHHHHHHHhhCC
Confidence 6 4678876543 231 1 2456777777777777665
No 271
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=81.90 E-value=11 Score=33.28 Aligned_cols=68 Identities=21% Similarity=0.139 Sum_probs=47.2
Q ss_pred CCeEEEEEEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHH
Q 008466 448 EGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIAL 527 (564)
Q Consensus 448 gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~ 527 (564)
+...+|+.+.+ +.+||+.-.-... . ++|.-..+...+ |++.+.|..|+.++-++|.
T Consensus 69 ~~~~l~~~~~~---g~~va~~~~~~~~-----------~------~~~~~~~g~~~~----~~~~~~~~~l~~~~i~~a~ 124 (142)
T PF13480_consen 69 GRLRLFVLYDG---GEPVAFALGFRHG-----------G------TLYYWYGGYDPE----YRKYSPGRLLLWEAIRWAI 124 (142)
T ss_pred CCEEEEEEEEC---CEEEEEEEEEEEC-----------C------EEEEEEEEECHh----hHhCCHHHHHHHHHHHHHH
Confidence 44566777776 7788887554332 1 233333334443 8999999999999999999
Q ss_pred hcCCCcEEEEecC
Q 008466 528 GEHRSRKMAVISG 540 (564)
Q Consensus 528 ~~~g~~~i~~~s~ 540 (564)
+ +|++.+.+..+
T Consensus 125 ~-~g~~~~d~g~g 136 (142)
T PF13480_consen 125 E-RGLRYFDFGGG 136 (142)
T ss_pred H-CCCCEEEECCC
Confidence 9 49999877543
No 272
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=81.76 E-value=4.2 Score=39.90 Aligned_cols=81 Identities=16% Similarity=0.313 Sum_probs=54.3
Q ss_pred EEEEEEe-eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCH
Q 008466 233 IGMTIET-RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGV 311 (564)
Q Consensus 233 ~eitiEt-rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~ 311 (564)
..+-+.+ +|+ ..++.+.++|+++|++=+|+.+ +..+.++.+|++|+++..-+-++-|-+.
T Consensus 60 ~DvHLMv~~P~----~~i~~~~~~g~~~i~~H~E~~~--------------~~~~~i~~ik~~g~k~GialnP~T~~~~- 120 (201)
T PF00834_consen 60 LDVHLMVENPE----RYIEEFAEAGADYITFHAEATE--------------DPKETIKYIKEAGIKAGIALNPETPVEE- 120 (201)
T ss_dssp EEEEEESSSGG----GHHHHHHHHT-SEEEEEGGGTT--------------THHHHHHHHHHTTSEEEEEE-TTS-GGG-
T ss_pred EEEEeeeccHH----HHHHHHHhcCCCEEEEcccchh--------------CHHHHHHHHHHhCCCEEEEEECCCCchH-
Confidence 4455554 775 6999999999999999998653 3456788899999998887766655433
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEeeeeecCCCh
Q 008466 312 ERDLESFREFFESPLFRADGLKIYPTLVIRGTG 344 (564)
Q Consensus 312 e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~ 344 (564)
++.++. .+|.|-+. ++.||..
T Consensus 121 ------~~~~l~----~vD~VlvM--sV~PG~~ 141 (201)
T PF00834_consen 121 ------LEPYLD----QVDMVLVM--SVEPGFG 141 (201)
T ss_dssp ------GTTTGC----CSSEEEEE--SS-TTTS
T ss_pred ------HHHHhh----hcCEEEEE--EecCCCC
Confidence 334432 36877665 5677764
No 273
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=79.06 E-value=2 Score=48.83 Aligned_cols=65 Identities=18% Similarity=0.310 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCCeEEEccC-------CCCHHHHH-----------hc---CCCCCHHHHHHHHHHHHHcCCcEEEE---
Q 008466 246 GPHLRQMLSYGCTRLEIGVQ-------STYEDVAR-----------DT---NRGHTVAAVADCFCLAKDAGFKVVAH--- 301 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQ-------S~~d~vL~-----------~i---~Rght~~~~~~ai~~lr~~G~~v~~~--- 301 (564)
.+..+++++.|+|.+++.+| ||-|.+.. -+ +|--|.++...|++.|+++||++..|
T Consensus 590 A~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~ptKYGs~~dL~~AikALH~~GiqviaDwVp 669 (809)
T PF02324_consen 590 AKNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKPTKYGSVEDLRNAIKALHAAGIQVIADWVP 669 (809)
T ss_dssp HHTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-BTTB-HHHHHHHHHHHHHTT-EEEEEE-T
T ss_pred HHhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCCCCCCCHHHHHHHHHHHHHcCcchhhhhch
Confidence 35567899999999999999 44333322 11 23347899999999999999998865
Q ss_pred -EecCCCCCC
Q 008466 302 -MMPDLPNVG 310 (564)
Q Consensus 302 -lI~GLPget 310 (564)
-|++|||+.
T Consensus 670 dQiYnLpg~E 679 (809)
T PF02324_consen 670 DQIYNLPGKE 679 (809)
T ss_dssp SEE---SEEE
T ss_pred HhhhCCCCce
Confidence 599999974
No 274
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=78.66 E-value=1.2e+02 Score=34.20 Aligned_cols=109 Identities=21% Similarity=0.204 Sum_probs=74.0
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHcCCcEEEEEe---cCCCCCCHHHHHHHHH
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRG--HTVAAVADCFCLAKDAGFKVVAHMM---PDLPNVGVERDLESFR 319 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~lI---~GLPget~e~~~~t~~ 319 (564)
.+..++.++++|+++|.+-+-+-+-...+.+|+. ...+.+.++++.+++.|+++.+..+ -+ +-.+++-+.+.++
T Consensus 87 ~d~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da-~r~d~~~l~~~~~ 165 (524)
T PRK12344 87 EDPNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDG-YKANPEYALATLK 165 (524)
T ss_pred cHHHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEcccccccc-ccCCHHHHHHHHH
Confidence 4567899999999999999866655555666653 3557778899999999998776433 22 2345666667777
Q ss_pred HHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhC
Q 008466 320 EFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMV 373 (564)
Q Consensus 320 ~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~l 373 (564)
.+. +.+++.|.+ +.|- | ...+++..+++..+.+.+
T Consensus 166 ~~~---~~Gad~i~l------~DTv-------G---~~~P~~v~~li~~l~~~~ 200 (524)
T PRK12344 166 AAA---EAGADWVVL------CDTN-------G---GTLPHEVAEIVAEVRAAP 200 (524)
T ss_pred HHH---hCCCCeEEE------ccCC-------C---CcCHHHHHHHHHHHHHhc
Confidence 765 567887653 3441 2 245667777777666655
No 275
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=78.28 E-value=8.3 Score=39.01 Aligned_cols=123 Identities=20% Similarity=0.170 Sum_probs=74.9
Q ss_pred EEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcC-CCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCe
Q 008466 182 VEFI-LMGGTFMSLPADYRDYFIRNLHDALSG-HTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTR 259 (564)
Q Consensus 182 ve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~-~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~r 259 (564)
|..+ |++||....|.+.+++.++..+++--. +..-.+.|.. ..++ .-++.++.+++.|++.
T Consensus 38 ID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a----------------~~q~-~~~~yl~~~k~lGf~~ 100 (244)
T PF02679_consen 38 IDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVA----------------YQQG-KFDEYLEECKELGFDA 100 (244)
T ss_dssp -SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHH----------------HHTT--HHHHHHHHHHCT-SE
T ss_pred ccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHH----------------HhcC-hHHHHHHHHHHcCCCE
Confidence 7788 899999999999999988877653210 0111122211 1233 4478999999999999
Q ss_pred EEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCC----CCHHHHHHHHHHHhcCCCCCCCeEEE
Q 008466 260 LEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPN----VGVERDLESFREFFESPLFRADGLKI 334 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPg----et~e~~~~t~~~~~~~~~l~pd~i~i 334 (564)
|+|.-=|. ..+.++-.+.++.+++.||+|..-+=.--|+ .|++.+.+.++..++ .+.+.|-+
T Consensus 101 IEiSdGti----------~l~~~~r~~~I~~~~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~dLe---AGA~~Vii 166 (244)
T PF02679_consen 101 IEISDGTI----------DLPEEERLRLIRKAKEEGFKVLSEVGKKDPESDFSLDPEELIEQAKRDLE---AGADKVII 166 (244)
T ss_dssp EEE--SSS-------------HHHHHHHHHHHCCTTSEEEEEES-SSHHHHTT--CCHHHHHHHHHHH---HTECEEEE
T ss_pred EEecCCce----------eCCHHHHHHHHHHHHHCCCEEeecccCCCchhcccCCHHHHHHHHHHHHH---CCCCEEEE
Confidence 99976554 2355777888999999999988765222222 134466777777764 35666544
No 276
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=78.26 E-value=75 Score=32.21 Aligned_cols=149 Identities=14% Similarity=0.133 Sum_probs=79.9
Q ss_pred cchHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCC-----CCH----HHHHHHHHHHHHHhcCCCc------hhhHHHhh
Q 008466 159 YNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMS-----LPA----DYRDYFIRNLHDALSGHTS------ANVEEAVT 223 (564)
Q Consensus 159 ~~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~-----l~~----~~l~~ll~~l~~~~~~~~~------~~l~e~~~ 223 (564)
+..+.+++.+..++.+.| .+.|=.|+..|. .+. +.+.++++.+.+..+...+ .-+++|++
T Consensus 20 ~~~~~~~~~~a~~~~~~G-----AdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~~~v~~aaL~ 94 (258)
T cd00423 20 FLSLDKALEHARRMVEEG-----ADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVDTFNAEVAEAALK 94 (258)
T ss_pred cCCHHHHHHHHHHHHHCC-----CCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCcHHHHHHHHH
Confidence 345677777777777777 566733433331 112 3455666666654331111 22455554
Q ss_pred hcccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCC-CCC----HHHHHHHHHHHHHcCCc-
Q 008466 224 YSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNR-GHT----VAAVADCFCLAKDAGFK- 297 (564)
Q Consensus 224 ~~~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~R-ght----~~~~~~ai~~lr~~G~~- 297 (564)
.. ..+--.++....+++.+..++++|+--|-+-.+........ ... ..+ .+.+.+.++.+.++|++
T Consensus 95 ~g-------~~iINdis~~~~~~~~~~l~~~~~~~vV~m~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~ 166 (258)
T cd00423 95 AG-------ADIINDVSGGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQN-NPYYADVVDEVVEFLEERVEAATEAGIPP 166 (258)
T ss_pred hC-------CCEEEeCCCCCCChHHHHHHHHcCCCEEEECcCCCCccccc-CCCcchHHHHHHHHHHHHHHHHHHcCCCH
Confidence 42 12222223332336788888889887777665432211100 000 122 34555667778899973
Q ss_pred --EEEEEecCCCCCCHHHHHHHHHHH
Q 008466 298 --VVAHMMPDLPNVGVERDLESFREF 321 (564)
Q Consensus 298 --v~~~lI~GLPget~e~~~~t~~~~ 321 (564)
+..|-.+|++. +.+.....++.+
T Consensus 167 ~~IilDPg~g~~k-~~~~~~~~l~~i 191 (258)
T cd00423 167 EDIILDPGIGFGK-TEEHNLELLRRL 191 (258)
T ss_pred HHEEEeCCCCccC-CHHHHHHHHHHH
Confidence 78899999776 555554444444
No 277
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=77.48 E-value=14 Score=39.30 Aligned_cols=84 Identities=19% Similarity=0.142 Sum_probs=57.6
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcC
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFES 324 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~ 324 (564)
+-+.+....++|.+.|.+|.+-++-+. -....|.+++.++++.++++|.++.+-+=.=+-.+..+.+.+.++.+.
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~~R~---~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~-- 89 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFGLRR---RALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLV-- 89 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCccccccc---ccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHH--
Confidence 567888888899999999998443332 224589999999999999999985432211122334455666777766
Q ss_pred CCCCCCeEEE
Q 008466 325 PLFRADGLKI 334 (564)
Q Consensus 325 ~~l~pd~i~i 334 (564)
+.++|.|-+
T Consensus 90 -e~GvDaviv 98 (347)
T COG0826 90 -ELGVDAVIV 98 (347)
T ss_pred -HcCCCEEEE
Confidence 456666544
No 278
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=77.28 E-value=33 Score=34.13 Aligned_cols=123 Identities=17% Similarity=0.265 Sum_probs=77.1
Q ss_pred EEEEEe-eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHH
Q 008466 234 GMTIET-RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVE 312 (564)
Q Consensus 234 eitiEt-rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e 312 (564)
.+-+.. +| +..++.+.++|+++|++=+|+. ....++++.+|+.|.+...-|=++-|=+..+
T Consensus 65 DvHLMV~~p----~~~i~~fa~agad~It~H~E~~--------------~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~ 126 (220)
T COG0036 65 DVHLMVENP----DRYIEAFAKAGADIITFHAEAT--------------EHIHRTIQLIKELGVKAGLVLNPATPLEALE 126 (220)
T ss_pred EEEEecCCH----HHHHHHHHHhCCCEEEEEeccC--------------cCHHHHHHHHHHcCCeEEEEECCCCCHHHHH
Confidence 344443 66 4899999999999999999832 2355788899999999888887777654444
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCChhHHH
Q 008466 313 RDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVT 392 (564)
Q Consensus 313 ~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~~l~~ 392 (564)
.+++. .|.|.+. +|.||..=.+ | .++..+.+..+.++++..- -..+. +.
T Consensus 127 ~~l~~-----------vD~VllM--sVnPGfgGQ~------F----i~~~l~Ki~~lr~~~~~~~-~~~Ie-------VD 175 (220)
T COG0036 127 PVLDD-----------VDLVLLM--SVNPGFGGQK------F----IPEVLEKIRELRAMIDERL-DILIE-------VD 175 (220)
T ss_pred HHHhh-----------CCEEEEE--eECCCCcccc------c----CHHHHHHHHHHHHHhcccC-CeEEE-------Ee
Confidence 33222 4666554 6777763221 1 2455566666666665310 11222 44
Q ss_pred hCCCcchHHHHHH
Q 008466 393 SGVEKGNLRELAL 405 (564)
Q Consensus 393 ~G~~~~~~~~~a~ 405 (564)
.|...-++++.+.
T Consensus 176 GGI~~~t~~~~~~ 188 (220)
T COG0036 176 GGINLETIKQLAA 188 (220)
T ss_pred CCcCHHHHHHHHH
Confidence 5677777766553
No 279
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=76.97 E-value=62 Score=33.25 Aligned_cols=224 Identities=19% Similarity=0.230 Sum_probs=123.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCc-hhhHHHhhhcccCCcccEEEEEEe-eCCCCCHHHHHHHHHcCCCe-EEEccCCCC
Q 008466 192 MSLPADYRDYFIRNLHDALSGHTS-ANVEEAVTYSEHGATKCIGMTIET-RPDYCLGPHLRQMLSYGCTR-LEIGVQSTY 268 (564)
Q Consensus 192 t~l~~~~l~~ll~~l~~~~~~~~~-~~l~e~~~~~~~~~~~~~eitiEt-rPd~i~~e~L~~L~~~G~~r-vsiGvQS~~ 268 (564)
|-+|.-|-+||+..|++.+-.... .+- ..+..-..+...+-.|.+.| +|.-+- +.|+.|.+.|... +.+-+ |.+
T Consensus 8 TDIPAfY~~Wf~nRl~~G~v~vrNPfn~-~qvsrv~l~p~~Vd~iVFWTKnp~P~l-~~L~~l~~~gy~~yfq~Ti-t~Y 84 (266)
T PF08902_consen 8 TDIPAFYSDWFMNRLREGYVLVRNPFNP-HQVSRVSLSPEDVDCIVFWTKNPAPFL-PYLDELDERGYPYYFQFTI-TGY 84 (266)
T ss_pred CCcccchHHHHHHHhhCCEEEeECCCCC-CceEEEEcChhcceEEEEecCCcHHHH-hhHHHHHhCCCceEEEEEe-CCC
Confidence 567888999999999875521100 000 00000011112344566777 776443 6888888877532 22222 344
Q ss_pred HHHHHhcCCC-CCHHHHHHHHHHHHH-cCCc-EE--EEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCC
Q 008466 269 EDVARDTNRG-HTVAAVADCFCLAKD-AGFK-VV--AHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGT 343 (564)
Q Consensus 269 d~vL~~i~Rg-ht~~~~~~ai~~lr~-~G~~-v~--~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT 343 (564)
...+ -.+ -+.++++++++.|.+ .|-. |+ .|=|+=-..-+.+-.++.|..+.+..+--.+.+.+.-+-+.+.+
T Consensus 85 ~~~l---Ep~vP~~~~~i~~f~~Ls~~iG~~rViWRYDPIil~~~~~~~~h~~~F~~la~~L~g~t~~~viSF~D~Y~k~ 161 (266)
T PF08902_consen 85 GKDL---EPNVPPKDERIETFRELSERIGPERVIWRYDPIILTDKYTVDYHLEAFERLAEALAGYTDRCVISFLDLYRKV 161 (266)
T ss_pred Cccc---cCCCCCHHHHHHHHHHHHHHHCCCcEEEecCCEeECCCCCHHHHHHHHHHHHHHHhccCCEEEEEeeeccHHH
Confidence 4443 233 367888888888776 4654 55 36444333456777778887776532223677766666665554
Q ss_pred hhHHHHHcC--CCCCCCHHHHHHHHHHHHHhCCCc-eEEeeeecCCChhHHHhCCCcch------HHHHHHhhc---ccc
Q 008466 344 GLYELWKTG--RYRNYPPEQLVDIVARILAMVPPW-TRVYRVQRDIPMPLVTSGVEKGN------LRELALARM---DDL 411 (564)
Q Consensus 344 ~L~~~~~~G--~~~~~~~ee~~~~~~~~~~~lp~~-iri~Ri~rdip~~l~~~G~~~~~------~~~~a~~~~---~~~ 411 (564)
. +.+... .+.+++.++..++...+.+....+ +.++=....+ .+...|..++. +.++.-..+ ++.
T Consensus 162 ~--~~l~~~~~~~~~~~~~~~~~l~~~l~~ia~~~g~~l~tC~E~~--~l~~~Gi~~~~CId~~li~~~~g~~~~~~kd~ 237 (266)
T PF08902_consen 162 R--RNLARLGFRIREPSEEEKRELAKRLAEIAKKYGMTLYTCAEKI--DLSQYGIEPGGCIDGELIERLFGRPLKSKKDK 237 (266)
T ss_pred H--HHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEeCcCCc--chhhcCCCCCCCCCHHHHHHHhCCCcCcCCCC
Confidence 3 223333 366889999988888777765443 4444333221 23445555433 333332222 223
Q ss_pred C--CcccceeeEEecc
Q 008466 412 G--LKCRDVRTREAGI 425 (564)
Q Consensus 412 g--~~c~~ir~re~~~ 425 (564)
| ..|.|...++.|.
T Consensus 238 ~QR~~C~C~~S~DIG~ 253 (266)
T PF08902_consen 238 GQRKECGCVESIDIGA 253 (266)
T ss_pred CCCCCCCCcCcccccc
Confidence 3 5688888777775
No 280
>smart00642 Aamy Alpha-amylase domain.
Probab=76.77 E-value=6.2 Score=37.42 Aligned_cols=64 Identities=14% Similarity=0.089 Sum_probs=47.9
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCH-----------HHHHhcC-CCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCC
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYE-----------DVARDTN-RGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNV 309 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d-----------~vL~~i~-Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPge 309 (564)
.++|+.|++.|++.|.|.+=.-+. .-+..++ +--|.+++.+.++.+++.|++|.+|+.+.--+.
T Consensus 22 ~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 22 IEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 357789999999999988732111 1122333 334789999999999999999999999887555
No 281
>PRK14057 epimerase; Provisional
Probab=76.60 E-value=38 Score=34.51 Aligned_cols=80 Identities=6% Similarity=0.106 Sum_probs=51.6
Q ss_pred EEEEEe-eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCc---------EEEEEe
Q 008466 234 GMTIET-RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFK---------VVAHMM 303 (564)
Q Consensus 234 eitiEt-rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~---------v~~~lI 303 (564)
.+-+.+ +|+ ..++.+.++|++.|.+=+|+. ....++++.+|+.|.+ ...=+=
T Consensus 79 DvHLMV~~P~----~~i~~~~~aGad~It~H~Ea~--------------~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAln 140 (254)
T PRK14057 79 DVHLMVADQW----TAAQACVKAGAHCITLQAEGD--------------IHLHHTLSWLGQQTVPVIGGEMPVIRGISLC 140 (254)
T ss_pred eEEeeeCCHH----HHHHHHHHhCCCEEEEeeccc--------------cCHHHHHHHHHHcCCCcccccccceeEEEEC
Confidence 344443 664 789999999999999999964 1356678889999974 443443
Q ss_pred cCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCCh
Q 008466 304 PDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTG 344 (564)
Q Consensus 304 ~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~ 344 (564)
|+...+.+...+.. +|.|-+. ++.||..
T Consensus 141 ---P~Tp~e~i~~~l~~--------vD~VLvM--tV~PGfg 168 (254)
T PRK14057 141 ---PATPLDVIIPILSD--------VEVIQLL--AVNPGYG 168 (254)
T ss_pred ---CCCCHHHHHHHHHh--------CCEEEEE--EECCCCC
Confidence 44444433222222 5776654 6778764
No 282
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=74.12 E-value=52 Score=36.93 Aligned_cols=131 Identities=16% Similarity=0.118 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCc------hhhHHHhhhcccCCcccEEEEE
Q 008466 164 QARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTS------ANVEEAVTYSEHGATKCIGMTI 237 (564)
Q Consensus 164 ~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~------~~l~e~~~~~~~~~~~~~eiti 237 (564)
....+..++.+.| ...|-.|+.++.-..+.+.++++.+.+.++...+ .-+++|++.. ..+--
T Consensus 166 ~i~~~A~~~~~~G-----ADIIDIG~~st~p~~~~v~~~V~~l~~~~~~pISIDT~~~~v~eaAL~aG-------AdiIN 233 (499)
T TIGR00284 166 GIEGLAARMERDG-----ADMVALGTGSFDDDPDVVKEKVKTALDALDSPVIADTPTLDELYEALKAG-------ASGVI 233 (499)
T ss_pred HHHHHHHHHHHCC-----CCEEEECCCcCCCcHHHHHHHHHHHHhhCCCcEEEeCCCHHHHHHHHHcC-------CCEEE
Confidence 3445555666777 5667455544444556688888888765431111 1133333321 01111
Q ss_pred EeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCC-cEEEEEecCCCCCCHHHHHH
Q 008466 238 ETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGF-KVVAHMMPDLPNVGVERDLE 316 (564)
Q Consensus 238 EtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~-~v~~~lI~GLPget~e~~~~ 316 (564)
..+... .++.+..++++|+.-|-+--| .....+...+.++.++++|+ ++.+|-++|.++.. +.+
T Consensus 234 sVs~~~-~d~~~~l~a~~g~~vVlm~~~-----------~~~~~~~l~~~ie~a~~~Gi~~IIlDPglg~~~~~---l~~ 298 (499)
T TIGR00284 234 MPDVEN-AVELASEKKLPEDAFVVVPGN-----------QPTNYEELAKAVKKLRTSGYSKVAADPSLSPPLLG---LLE 298 (499)
T ss_pred ECCccc-hhHHHHHHHHcCCeEEEEcCC-----------CCchHHHHHHHHHHHHHCCCCcEEEeCCCCcchHH---HHH
Confidence 111121 124445555556555444321 12334778889999999999 58889998875433 444
Q ss_pred HHHHH
Q 008466 317 SFREF 321 (564)
Q Consensus 317 t~~~~ 321 (564)
++..+
T Consensus 299 sL~~l 303 (499)
T TIGR00284 299 SIIRF 303 (499)
T ss_pred HHHHH
Confidence 44443
No 283
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=73.39 E-value=4 Score=34.75 Aligned_cols=47 Identities=11% Similarity=0.050 Sum_probs=39.4
Q ss_pred hhhhcCHHHHHHHHHHHHHHhcCCCcEE--EEecCCCcHHHHhhCCCeee
Q 008466 508 KLQHQGYGTLLMEEAERIALGEHRSRKM--AVISGVGTRHYYRKLGYELE 555 (564)
Q Consensus 508 ~~q~~GiG~~Lm~~aE~~A~~~~g~~~i--~~~s~~~a~~fY~klGy~~~ 555 (564)
+|||||+.+.++-...+...+. |+.-- +..+|...++.-+++||...
T Consensus 30 eyR~~G~~~~v~~~~~~~L~~~-g~P~Y~hv~~~N~~~~r~~~~lg~~~~ 78 (89)
T PF08444_consen 30 EYRGQGLMSQVMYHLAQYLHKL-GFPFYGHVDEDNEASQRLSKSLGFIFM 78 (89)
T ss_pred hHhcCCHHHHHHHHHHHHHHHC-CCCeEeehHhccHHHHHHHHHCCCeec
Confidence 4999999999999999999984 98864 23467788999999999763
No 284
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=73.05 E-value=4.3 Score=44.61 Aligned_cols=48 Identities=21% Similarity=0.373 Sum_probs=40.4
Q ss_pred hhhcCHHHHHHHHHHHHHHhcCCCcEEEEe-----cCCCcHHHHhhCCCeeeCc
Q 008466 509 LQHQGYGTLLMEEAERIALGEHRSRKMAVI-----SGVGTRHYYRKLGYELEGP 557 (564)
Q Consensus 509 ~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~-----s~~~a~~fY~klGy~~~g~ 557 (564)
.=|+++=.+||..+|+.|+.+ |+..|... -|..+..||+++||...|+
T Consensus 498 VlgRkvE~~l~~~~~e~A~~~-gi~tir~~Y~pt~kN~pv~~FyE~mgf~l~~e 550 (574)
T COG3882 498 VLGRKVEQRLMNSLEEQALSE-GINTIRGYYIPTEKNAPVSDFYERMGFKLKGE 550 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CcceeeeEecccccCCcHHHHHHHhccccccc
Confidence 458889999999999999996 99998543 3557799999999997763
No 285
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=72.48 E-value=8 Score=35.26 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=44.3
Q ss_pred eecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEE--ecC---CCcHHHHhhCCCeeeCc
Q 008466 494 VYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAV--ISG---VGTRHYYRKLGYELEGP 557 (564)
Q Consensus 494 vyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~--~s~---~~a~~fY~klGy~~~g~ 557 (564)
+|---|-|..+ .||+|+|+.|.+-+-..|... |+..|.. .+. ..+-.|=..+||...|+
T Consensus 85 ~YvDRvVVA~~----aRGrG~aRalY~Dlf~~Ae~a-gy~~~tCEVn~DppnpasdaFHaalGF~eVG~ 148 (167)
T COG3818 85 FYVDRVVVASR----ARGRGVARALYADLFSYAELA-GYPYLTCEVNLDPPNPASDAFHAALGFHEVGQ 148 (167)
T ss_pred EEEEEEEEEec----ccccchHHHHHHHHHHHHHhc-CCceEEEEecCCCCChHHHHHhhhcCceEccc
Confidence 33333446666 799999999999999999985 9999854 332 23366778999999885
No 286
>PRK00915 2-isopropylmalate synthase; Validated
Probab=72.46 E-value=1.7e+02 Score=32.90 Aligned_cols=120 Identities=10% Similarity=0.039 Sum_probs=78.8
Q ss_pred EEEEEEeeCCCCCHHHHHHHH----HcCCCeEEEccCCCCHHHHHhcCCCC--CHHHHHHHHHHHHHcCCcEEEEEecCC
Q 008466 233 IGMTIETRPDYCLGPHLRQML----SYGCTRLEIGVQSTYEDVARDTNRGH--TVAAVADCFCLAKDAGFKVVAHMMPDL 306 (564)
Q Consensus 233 ~eitiEtrPd~i~~e~L~~L~----~~G~~rvsiGvQS~~d~vL~~i~Rgh--t~~~~~~ai~~lr~~G~~v~~~lI~GL 306 (564)
..++.-+|+. .+.++... ++|..+|.+-+=+.+-.+...+++.. ..+.+.++++.+++.|+.+.++.+-+.
T Consensus 68 ~~i~a~~r~~---~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~ 144 (513)
T PRK00915 68 STVCGLARAV---KKDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDAT 144 (513)
T ss_pred CEEEEEccCC---HHHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3455555543 33444444 78899999988555555555666532 335566899999999999888777655
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 307 PNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 307 Pget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
--+++-+.+.++.+. +.+++.|.+ +.|- | ..++++..+++..+.+.+|.
T Consensus 145 -r~d~~~l~~~~~~~~---~~Ga~~i~l------~DTv-------G---~~~P~~~~~~i~~l~~~~~~ 193 (513)
T PRK00915 145 -RTDLDFLCRVVEAAI---DAGATTINI------PDTV-------G---YTTPEEFGELIKTLRERVPN 193 (513)
T ss_pred -CCCHHHHHHHHHHHH---HcCCCEEEE------ccCC-------C---CCCHHHHHHHHHHHHHhCCC
Confidence 345676777777776 456776544 3341 1 24677888888888887763
No 287
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=71.54 E-value=13 Score=33.35 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=18.1
Q ss_pred ccCCCchhhhhcCHHHHHHHHHHHH
Q 008466 501 VHGREADKLQHQGYGTLLMEEAERI 525 (564)
Q Consensus 501 v~~~~~~~~q~~GiG~~Lm~~aE~~ 525 (564)
|+++ .|.+|+|++|++...+.
T Consensus 54 Vhes----~QR~G~Gk~LF~~ML~~ 74 (120)
T PF05301_consen 54 VHES----RQRRGYGKRLFDHMLQE 74 (120)
T ss_pred EEec----eeccCchHHHHHHHHHH
Confidence 7887 99999999999987544
No 288
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=69.22 E-value=30 Score=33.35 Aligned_cols=98 Identities=17% Similarity=0.211 Sum_probs=58.6
Q ss_pred CeEEEEEEeecCCCeEEEEEEEEecCCCC-----CccccC-C----ccceeeeeeeecccccccCCCchhh--hhcCHHH
Q 008466 449 GWETFLSYEDTRQDILVGLLRLRKCGRNV-----TCPELM-G----KCSIVRELHVYGTAVPVHGREADKL--QHQGYGT 516 (564)
Q Consensus 449 g~e~fls~~d~~~~~lvG~lrlr~~~~~~-----~~~el~-~----~~~~~relhvyg~~~~v~~~~~~~~--q~~GiG~ 516 (564)
...+.++..+ +.++|.+||.-.. .| ..+++- + .+.-+=|+--+ .|...-.... ...-+..
T Consensus 44 ~~~ylv~~~~---g~v~g~~RLlptt-~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf----~v~~~~~~~~~~~~~~~~~ 115 (182)
T PF00765_consen 44 DAVYLVALDD---GRVVGCARLLPTT-GPYMLSDVFPHLLPDGPAPRSPDVWELSRF----CVDPDRRRSRAGSRSPVTM 115 (182)
T ss_dssp T-EEEEEEET---TEEEEEEEEEETT-S--HHHHCTGGGHTTS---SSTTEEEEEEE----EE-HCCCHHCHSCC-THHH
T ss_pred CCeEEEEEEC---CEEEEEeeeccCC-CcchhhhHHHHHhCCCCCCCCCcceeeeEE----EEcccccccccccccHHHH
Confidence 3555555554 8899999998544 33 222332 1 12334444433 2332211112 2235788
Q ss_pred HHHHHHHHHHHhcCCCcEEEEecCCCcHHHHhhCCCeee
Q 008466 517 LLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELE 555 (564)
Q Consensus 517 ~Lm~~aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~~ 555 (564)
.|+..+-++|.+ +|++.+.........++|++.||...
T Consensus 116 ~L~~~~~e~a~~-~gi~~~v~V~~~~~~r~l~r~G~~~~ 153 (182)
T PF00765_consen 116 ELLLGMVEFALS-NGIRHIVGVVDPAMERILRRAGWPVR 153 (182)
T ss_dssp HHHHHHHHHHHC-TT-SEEEEEEEHHHHHHHHHCT-EEE
T ss_pred HHHHHHHHHHHH-CCCCEEEEEEChHHHHHHHHcCCceE
Confidence 999999999999 59999976666678999999999763
No 289
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=69.09 E-value=19 Score=36.33 Aligned_cols=40 Identities=8% Similarity=-0.018 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEecCCCcHHHHhhCCCee
Q 008466 514 YGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYEL 554 (564)
Q Consensus 514 iG~~Lm~~aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~ 554 (564)
+...|+..+-++|.+ +|++.+...........++++|+..
T Consensus 156 ~~~~L~~~~~~~a~~-~Gi~~~~~v~~~~l~r~l~r~G~~~ 195 (241)
T TIGR03694 156 IPLGLYLGLIALSSA-NGITHWYAIMEPRLARLLSRFGIQF 195 (241)
T ss_pred HHHHHHHHHHHHHHH-CCCcEEEEEeCHHHHHHHHHhCCce
Confidence 457799999999999 5999997777667888999999854
No 290
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=66.21 E-value=14 Score=39.25 Aligned_cols=55 Identities=18% Similarity=0.099 Sum_probs=37.9
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEec
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMP 304 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~ 304 (564)
..+.++.|+++|+|.|.+-|=.-+.. +--.+.+++++..++++++|+++..||.+
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~-----~g~~~~~~~~~~akrak~~Gm~vlldfHY 80 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYD-----GGYNDLEDVIALAKRAKAAGMKVLLDFHY 80 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TT-----TTTTSHHHHHHHHHHHHHTT-EEEEEE-S
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcc-----cccCCHHHHHHHHHHHHHCCCeEEEeecc
Confidence 46799999999998777766222222 33458899999999999999999999877
No 291
>TIGR00620 sporelyase spore photoproduct lyase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.92 E-value=50 Score=32.45 Aligned_cols=93 Identities=15% Similarity=0.169 Sum_probs=60.5
Q ss_pred EEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCC-CHHHHHHHHHHHHHcCCcEEEEEecCCCCCCH
Q 008466 233 IGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGH-TVAAVADCFCLAKDAGFKVVAHMMPDLPNVGV 311 (564)
Q Consensus 233 ~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rgh-t~~~~~~ai~~lr~~G~~v~~~lI~GLPget~ 311 (564)
..+++-| .+.+-+.|..+.-.|-+++...+-+ +.+.+..-++. ++++-++|++.+.++|++|..++-+=++-+++
T Consensus 25 ~~lef~T--K~~nv~~Ll~l~~~~~t~~rfSlnp--~~Ii~~~E~~T~sl~~Rl~Aa~k~a~aGy~Vg~~~~PIi~~egW 100 (199)
T TIGR00620 25 GKLRFVT--KFHHVDHLLDAKHNGKTRFRFSINA--DYVIKNFEPGTSPLDKRIEAAVKVAKAGYPLGFIIAPIYIHEGW 100 (199)
T ss_pred cEEEEEE--cccchhhHhcCCCCCCEEEEEEeCH--HHHHHHhcCCCCCHHHHHHHHHHHHHcCCeEEEEeeceEeeCCh
Confidence 3444444 3344455555555665665554422 56677777664 77999999999999999999888777777777
Q ss_pred HHH-HHHHHHHhcCCCCCCCe
Q 008466 312 ERD-LESFREFFESPLFRADG 331 (564)
Q Consensus 312 e~~-~~t~~~~~~~~~l~pd~ 331 (564)
++. .+.++.+++ .+.++.
T Consensus 101 ~e~Y~~l~~~l~~--~l~~~~ 119 (199)
T TIGR00620 101 KEGYRNLLEKLDE--ALPQDL 119 (199)
T ss_pred HHHHHHHHHHHHH--hCCHhh
Confidence 654 455555553 344433
No 292
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=65.38 E-value=27 Score=31.84 Aligned_cols=86 Identities=19% Similarity=0.168 Sum_probs=55.5
Q ss_pred HHHHcCCCeEEEccCCCCHHHHHhcCC------------CCCHHHHHHHHHHHHHcCCcEEEEEecCC---CCCCHHHHH
Q 008466 251 QMLSYGCTRLEIGVQSTYEDVARDTNR------------GHTVAAVADCFCLAKDAGFKVVAHMMPDL---PNVGVERDL 315 (564)
Q Consensus 251 ~L~~~G~~rvsiGvQS~~d~vL~~i~R------------ght~~~~~~ai~~lr~~G~~v~~~lI~GL---Pget~e~~~ 315 (564)
.|+.+|+.-+.+|++...+++.+...+ +++...+.+.++.++++|+.-..=++=|. |.++.++
T Consensus 22 ~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~-- 99 (128)
T cd02072 22 AFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFED-- 99 (128)
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHH--
Confidence 555678888999998888888776543 57788999999999999984322233333 4444433
Q ss_pred HHHHHHhcCCCCCCCeEEEeeeeecCCChhHHH
Q 008466 316 ESFREFFESPLFRADGLKIYPTLVIRGTGLYEL 348 (564)
Q Consensus 316 ~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~ 348 (564)
....+. +++.+.+ | -|||++.+.
T Consensus 100 -~~~~L~---~~Gv~~v--f----~pgt~~~~i 122 (128)
T cd02072 100 -VEKRFK---EMGFDRV--F----APGTPPEEA 122 (128)
T ss_pred -HHHHHH---HcCCCEE--E----CcCCCHHHH
Confidence 333333 4566653 3 368876653
No 293
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=63.58 E-value=38 Score=34.56 Aligned_cols=95 Identities=24% Similarity=0.258 Sum_probs=63.6
Q ss_pred EEEEEEeeCCCC-CHHHHHHHHHcCCCeEEEccCC---------CCHHHHHhcCCCCCHHHHHHHHHHHHHcC--CcEEE
Q 008466 233 IGMTIETRPDYC-LGPHLRQMLSYGCTRLEIGVQS---------TYEDVARDTNRGHTVAAVADCFCLAKDAG--FKVVA 300 (564)
Q Consensus 233 ~eitiEtrPd~i-~~e~L~~L~~~G~~rvsiGvQS---------~~d~vL~~i~Rght~~~~~~ai~~lr~~G--~~v~~ 300 (564)
+.+..-..||.= +.+.+..|.+.|++.|+||+=. ......+.+..|.+.+++.+.++.+|+.. +++.
T Consensus 15 i~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~v- 93 (258)
T PRK13111 15 IPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIV- 93 (258)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-
Confidence 344444467633 4567888999999999999866 33455677889999999999999999543 4443
Q ss_pred EEecCCC--CCCHHHHHHHHHHHhcCCCCCCCeEEE
Q 008466 301 HMMPDLP--NVGVERDLESFREFFESPLFRADGLKI 334 (564)
Q Consensus 301 ~lI~GLP--get~e~~~~t~~~~~~~~~l~pd~i~i 334 (564)
-|.+--| ..+.+.+.+.+.. .+.|++-+
T Consensus 94 lm~Y~N~i~~~G~e~f~~~~~~------aGvdGvii 123 (258)
T PRK13111 94 LMTYYNPIFQYGVERFAADAAE------AGVDGLII 123 (258)
T ss_pred EEecccHHhhcCHHHHHHHHHH------cCCcEEEE
Confidence 2222212 3366766666554 46787765
No 294
>PLN00196 alpha-amylase; Provisional
Probab=62.76 E-value=18 Score=39.79 Aligned_cols=63 Identities=14% Similarity=0.116 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCCeEEEcc--CCCCH-----HHHHhcC--CCCCHHHHHHHHHHHHHcCCcEEEEEecCCCC
Q 008466 246 GPHLRQMLSYGCTRLEIGV--QSTYE-----DVARDTN--RGHTVAAVADCFCLAKDAGFKVVAHMMPDLPN 308 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGv--QS~~d-----~vL~~i~--Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPg 308 (564)
.++|..|+++|+|.|-|.+ +|.+. .-+-.++ |--|.+++.+.++.+++.||+|.+|+.++-=+
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~ 118 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 118 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCcc
Confidence 5789999999999999986 22211 1123454 44588999999999999999999999887544
No 295
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=62.15 E-value=22 Score=35.83 Aligned_cols=63 Identities=19% Similarity=0.279 Sum_probs=47.8
Q ss_pred EEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEE
Q 008466 233 IGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA 300 (564)
Q Consensus 233 ~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~ 300 (564)
+.+++-..|| .+.++.-++.|.++|++=-....+.. .. .+....+.+..+.+.+++.|+.|+.
T Consensus 127 IrVSLFidP~---~~qi~~A~~~GAd~VELhTG~yA~a~-~~-~~~~el~~~~~aa~~a~~lGL~VnA 189 (239)
T PRK05265 127 IRVSLFIDPD---PEQIEAAAEVGADRIELHTGPYADAK-TE-AEAAELERIAKAAKLAASLGLGVNA 189 (239)
T ss_pred CEEEEEeCCC---HHHHHHHHHhCcCEEEEechhhhcCC-Cc-chHHHHHHHHHHHHHHHHcCCEEec
Confidence 5788888887 89999999999999999765554421 11 1123467888999999999998875
No 296
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=61.97 E-value=2.7e+02 Score=31.23 Aligned_cols=105 Identities=10% Similarity=-0.005 Sum_probs=69.3
Q ss_pred HHHHcCCCeEEEccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCC
Q 008466 251 QMLSYGCTRLEIGVQSTYEDVARDTNRG--HTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFR 328 (564)
Q Consensus 251 ~L~~~G~~rvsiGvQS~~d~vL~~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~ 328 (564)
.+..++..+|.+-+=+.+-.....+++. ...+.+.++++.+++.|..+.++..-+.. .+++.+.+.++.+. +.+
T Consensus 84 al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r-~d~~~l~~~~~~~~---~~G 159 (494)
T TIGR00973 84 ALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGR-TEIPFLARIVEAAI---NAG 159 (494)
T ss_pred hccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCC-CCHHHHHHHHHHHH---HcC
Confidence 4444578889888765555555566543 23355667999999999988777765543 35666777777776 456
Q ss_pred CCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 329 ADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 329 pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
++.|.+ +.|- | ...+++..+++..+.+.+|.
T Consensus 160 a~~i~l------~DTv-------G---~~~P~~~~~~i~~l~~~~~~ 190 (494)
T TIGR00973 160 ATTINI------PDTV-------G---YALPAEYGNLIKGLRENVPN 190 (494)
T ss_pred CCEEEe------CCCC-------C---CCCHHHHHHHHHHHHHhhcc
Confidence 776544 3441 1 24577888888888777763
No 297
>PRK15447 putative protease; Provisional
Probab=61.60 E-value=46 Score=34.67 Aligned_cols=50 Identities=12% Similarity=-0.002 Sum_probs=42.3
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEE
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA 300 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~ 300 (564)
-+.....+.+.|+++|.+|.+.++.+. ..+.+++.++++.++++|.++.+
T Consensus 17 ~~~~~~~~~~~gaDaVY~g~~~~~~R~------~f~~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 17 VRDFYQRAADSPVDIVYLGETVCSKRR------ELKVGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred HHHHHHHHHcCCCCEEEECCccCCCcc------CCCHHHHHHHHHHHHHcCCEEEE
Confidence 345677788889999999988877663 68999999999999999988665
No 298
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=61.50 E-value=40 Score=33.90 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=48.3
Q ss_pred cEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEE
Q 008466 232 CIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA 300 (564)
Q Consensus 232 ~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~ 300 (564)
.+.+++-..|| ++.++.-++.|+++|+|=-....+..-.. .+....+.+.++.+.+++.|+.|+.
T Consensus 123 gI~VSLFiDP~---~~qi~~A~~~GAd~VELhTG~YA~a~~~~-~~~~el~~i~~aa~~A~~lGL~VnA 187 (237)
T TIGR00559 123 GIEVSLFIDAD---KDQISAAAEVGADRIEIHTGPYANAYNKK-EMAEELQRIVKASVHAHSLGLKVNA 187 (237)
T ss_pred CCEEEEEeCCC---HHHHHHHHHhCcCEEEEechhhhcCCCch-hHHHHHHHHHHHHHHHHHcCCEEec
Confidence 36788888998 99999999999999999766554321100 0112367788899999999999885
No 299
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=60.25 E-value=2.2e+02 Score=31.07 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=79.2
Q ss_pred EEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEE-ecCCCCCCHHHH
Q 008466 236 TIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHM-MPDLPNVGVERD 314 (564)
Q Consensus 236 tiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~l-I~GLPget~e~~ 314 (564)
..-..||++-+..++...+.|++-+-| .+.+| ++.....|++.+++.|-.+..-+ +.=-|--|.+-+
T Consensus 91 GYrhyaDDvVe~Fv~ka~~nGidvfRi---------FDAlN---D~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~y 158 (472)
T COG5016 91 GYRHYADDVVEKFVEKAAENGIDVFRI---------FDALN---DVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYY 158 (472)
T ss_pred cccCCchHHHHHHHHHHHhcCCcEEEe---------chhcc---chhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHH
Confidence 344678888888999999999876543 34444 45567778888899998765433 333578899999
Q ss_pred HHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEe
Q 008466 315 LESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVY 380 (564)
Q Consensus 315 ~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~ 380 (564)
.+-.+++. ++++|.|.|--. .|- +++.+.-+++..+++.++--+.++
T Consensus 159 v~~akel~---~~g~DSIciKDm-------------aGl---ltP~~ayelVk~iK~~~~~pv~lH 205 (472)
T COG5016 159 VELAKELL---EMGVDSICIKDM-------------AGL---LTPYEAYELVKAIKKELPVPVELH 205 (472)
T ss_pred HHHHHHHH---HcCCCEEEeecc-------------ccc---CChHHHHHHHHHHHHhcCCeeEEe
Confidence 99999987 578998876421 232 566677777777777776444443
No 300
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=59.34 E-value=50 Score=30.28 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=39.6
Q ss_pred HHHHHcCCCeEEEccCCCCHHHHHhcCC------------CCCHHHHHHHHHHHHHcCCcEEEEEecC
Q 008466 250 RQMLSYGCTRLEIGVQSTYEDVARDTNR------------GHTVAAVADCFCLAKDAGFKVVAHMMPD 305 (564)
Q Consensus 250 ~~L~~~G~~rvsiGvQS~~d~vL~~i~R------------ght~~~~~~ai~~lr~~G~~v~~~lI~G 305 (564)
..|+++|+.-+.+|++...+++.+...+ +++...+.+.++.+++.|+.... +|.|
T Consensus 23 ~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~-vivG 89 (134)
T TIGR01501 23 HAFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGIL-LYVG 89 (134)
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCE-EEec
Confidence 4556678888888887777777765443 67788888999999999886333 4444
No 301
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=58.52 E-value=53 Score=30.94 Aligned_cols=79 Identities=14% Similarity=0.065 Sum_probs=51.5
Q ss_pred HHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEE-EE--ecCCCC-----CC------HHHH
Q 008466 249 LRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA-HM--MPDLPN-----VG------VERD 314 (564)
Q Consensus 249 L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~-~l--I~GLPg-----et------~e~~ 314 (564)
++.++++|++.|++..-...+.... ..+..+..+.++++|+++.. +. ....+. .. .+.+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 73 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYL 73 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHH
Confidence 5788999999999998766555544 56777888889999999653 33 222221 12 3333
Q ss_pred HHHHHHHhcCCCCCCCeEEEeee
Q 008466 315 LESFREFFESPLFRADGLKIYPT 337 (564)
Q Consensus 315 ~~t~~~~~~~~~l~pd~i~iy~l 337 (564)
.+.++.+ ..++.+.+.+++-
T Consensus 74 ~~~i~~a---~~lg~~~i~~~~g 93 (213)
T PF01261_consen 74 KKAIDLA---KRLGAKYIVVHSG 93 (213)
T ss_dssp HHHHHHH---HHHTBSEEEEECT
T ss_pred HHHHHHH---HHhCCCceeecCc
Confidence 3344333 3577888887754
No 302
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=58.50 E-value=2.3e+02 Score=29.27 Aligned_cols=65 Identities=17% Similarity=0.090 Sum_probs=50.0
Q ss_pred EEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHH-hcCCCC--CHHHHHHHHHHHHHcCCcEEEEE
Q 008466 234 GMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVAR-DTNRGH--TVAAVADCFCLAKDAGFKVVAHM 302 (564)
Q Consensus 234 eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~-~i~Rgh--t~~~~~~ai~~lr~~G~~v~~~l 302 (564)
+++...||. .+.++...++|+++|.+-+ |.++.-++ .+|+.. ..+.+.++++.+++.|+.+.+++
T Consensus 68 ~v~~~~r~~---~~die~A~~~g~~~v~i~~-s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 68 EVTGWIRAN---KEDLKLVKEMGLKETGILM-SVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred EEEEEecCC---HHHHHHHHHcCcCEEEEEE-cCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 455556764 7788999999999999977 66666554 777653 45677788999999999988777
No 303
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=58.36 E-value=1.1e+02 Score=34.18 Aligned_cols=108 Identities=18% Similarity=0.207 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCC-
Q 008466 164 QARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPD- 242 (564)
Q Consensus 164 ~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd- 242 (564)
+...+...|...| ++.|+..-+- ..+ ..+..+++.|++.++. +.+-+ +
T Consensus 225 ~~~~ra~~Lv~aG-----Vd~i~~D~a~-g~~-~~~~~~i~~i~~~~~~--------------------~~vi~----g~ 273 (475)
T TIGR01303 225 DVGGKAKALLDAG-----VDVLVIDTAH-GHQ-VKMISAIKAVRALDLG--------------------VPIVA----GN 273 (475)
T ss_pred cHHHHHHHHHHhC-----CCEEEEeCCC-CCc-HHHHHHHHHHHHHCCC--------------------CeEEE----ec
Confidence 3344555666666 5667665444 333 6777888999887642 12222 3
Q ss_pred CCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCC-C-CCHHHHHHHHHHHHHcCCcEEEEE
Q 008466 243 YCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNR-G-HTVAAVADCFCLAKDAGFKVVAHM 302 (564)
Q Consensus 243 ~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~R-g-ht~~~~~~ai~~lr~~G~~v~~~l 302 (564)
..|.+....|.++|++-|.+|+-+++.-+.+.+.- | -+...+.++.+.+++.|+.++.|=
T Consensus 274 ~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadG 335 (475)
T TIGR01303 274 VVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADG 335 (475)
T ss_pred cCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeC
Confidence 46899999999999999999998877776653321 2 256778888888899888877763
No 304
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=58.10 E-value=2.2e+02 Score=28.96 Aligned_cols=147 Identities=14% Similarity=0.124 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCC-----CCCHH----HHHHHHHHHHHHhcCCCc------hhhHHHhhhc
Q 008466 161 PYVQARSRIDQLKRLGHSVDKVEFILMGGTFM-----SLPAD----YRDYFIRNLHDALSGHTS------ANVEEAVTYS 225 (564)
Q Consensus 161 ~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt-----~l~~~----~l~~ll~~l~~~~~~~~~------~~l~e~~~~~ 225 (564)
...+++.+..++.+.| ...|=.||..| .++++ .+.++++.+.+.++...+ .-+++|++..
T Consensus 21 ~~~~~~~~a~~~~~~G-----A~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi~~al~~G 95 (257)
T TIGR01496 21 SVDKAVAHAERMLEEG-----ADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRAEVARAALEAG 95 (257)
T ss_pred CHHHHHHHHHHHHHCC-----CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHcC
Confidence 3456666666677777 55563354322 12332 355666666554331111 2255555441
Q ss_pred ccCCcccEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCC-CCCH----HHHHHHHHHHHHcCCc---
Q 008466 226 EHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNR-GHTV----AAVADCFCLAKDAGFK--- 297 (564)
Q Consensus 226 ~~~~~~~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~R-ght~----~~~~~ai~~lr~~G~~--- 297 (564)
.+ +-=...-.. +++.+..++++|+.-|-+--+.. +...+.... .... +.+.+.++.+.++|++
T Consensus 96 ---~~----iINsis~~~-~~~~~~l~~~~~~~vV~m~~~g~-p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~ 166 (257)
T TIGR01496 96 ---AD----IINDVSGGQ-DPAMLEVAAEYGVPLVLMHMRGT-PRTMQENPHYEDVVEEVLRFLEARAEELVAAGVAAER 166 (257)
T ss_pred ---CC----EEEECCCCC-CchhHHHHHHcCCcEEEEeCCCC-CcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 11 111111111 56788888888876666543321 111000000 0112 3345667778899994
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHh
Q 008466 298 VVAHMMPDLPNVGVERDLESFREFF 322 (564)
Q Consensus 298 v~~~lI~GLPget~e~~~~t~~~~~ 322 (564)
+..|-.+|+ +.+.+...+.++.+-
T Consensus 167 iilDPg~gf-~ks~~~~~~~l~~i~ 190 (257)
T TIGR01496 167 IILDPGIGF-GKTPEHNLELLKHLE 190 (257)
T ss_pred EEEECCCCc-ccCHHHHHHHHHHHH
Confidence 677877776 446776666666654
No 305
>PLN02361 alpha-amylase
Probab=57.74 E-value=28 Score=37.93 Aligned_cols=61 Identities=10% Similarity=0.023 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCCeEEEccC--CCC-----HHHHHhcCCC-CCHHHHHHHHHHHHHcCCcEEEEEecCC
Q 008466 246 GPHLRQMLSYGCTRLEIGVQ--STY-----EDVARDTNRG-HTVAAVADCFCLAKDAGFKVVAHMMPDL 306 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQ--S~~-----d~vL~~i~Rg-ht~~~~~~ai~~lr~~G~~v~~~lI~GL 306 (564)
.++|+.|+++|++.|-|.+= |.. ..-+..++-. -|.+++.+.++.+++.|++|.+|+.++-
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH 100 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINH 100 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEcccc
Confidence 46889999999999988873 222 1123334433 3789999999999999999999887754
No 306
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=56.67 E-value=7.9 Score=39.10 Aligned_cols=66 Identities=15% Similarity=0.137 Sum_probs=48.4
Q ss_pred HHHHHHHHcCCCeEEEcc--CCC-CH---HH--HHhcCC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHH
Q 008466 247 PHLRQMLSYGCTRLEIGV--QST-YE---DV--ARDTNR-GHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVE 312 (564)
Q Consensus 247 e~L~~L~~~G~~rvsiGv--QS~-~d---~v--L~~i~R-ght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e 312 (564)
++|+.|+++|++.|.|.+ ++. .. .+ ...++- --|.+++.+.++.+++.|++|++|+.++--+..-.
T Consensus 8 ~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~~~ 82 (316)
T PF00128_consen 8 DKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDDHP 82 (316)
T ss_dssp HTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETTSH
T ss_pred HhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccccccc
Confidence 578999999999999876 222 01 11 123333 23789999999999999999999999986555544
No 307
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=56.53 E-value=71 Score=31.29 Aligned_cols=90 Identities=18% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCC
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESP 325 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~ 325 (564)
.++...|.++|++++.+-| ++-.-...+.=||. ++++++.-...-.-..+|||+ ++++++.+.+...
T Consensus 20 ~~e~~~~l~~GadwlHlDV--MDg~FVpNiT~G~p---vV~slR~~~~~~~ffD~HmMV----~~Peq~V~~~a~a---- 86 (224)
T KOG3111|consen 20 AAECKKMLDAGADWLHLDV--MDGHFVPNITFGPP---VVESLRKHTGADPFFDVHMMV----ENPEQWVDQMAKA---- 86 (224)
T ss_pred HHHHHHHHHcCCCeEEEee--ecccccCCcccchH---HHHHHHhccCCCcceeEEEee----cCHHHHHHHHHhc----
Q ss_pred CCCCCeEEEee---------------------eeecCCChhHHHHH
Q 008466 326 LFRADGLKIYP---------------------TLVIRGTGLYELWK 350 (564)
Q Consensus 326 ~l~pd~i~iy~---------------------l~v~~GT~L~~~~~ 350 (564)
+.+.+++|. +.+.|||+......
T Consensus 87 --gas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~ 130 (224)
T KOG3111|consen 87 --GASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEP 130 (224)
T ss_pred --CcceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHH
No 308
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=56.03 E-value=90 Score=31.95 Aligned_cols=116 Identities=14% Similarity=0.144 Sum_probs=76.1
Q ss_pred EEEEEEeeCCCC-CHHHHHHHHHcCCCeEEEccCCCCH---------HHHHhcCCCCCHHHHHHHHHHHHHc-CCcEEEE
Q 008466 233 IGMTIETRPDYC-LGPHLRQMLSYGCTRLEIGVQSTYE---------DVARDTNRGHTVAAVADCFCLAKDA-GFKVVAH 301 (564)
Q Consensus 233 ~eitiEtrPd~i-~~e~L~~L~~~G~~rvsiGvQS~~d---------~vL~~i~Rght~~~~~~ai~~lr~~-G~~v~~~ 301 (564)
+.+..-..||.= +.+.+..|.+.|++-|+||+=.-|+ .-.+.+..|.|.+++.+.++.+|+. .+++. -
T Consensus 18 i~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~v-l 96 (263)
T CHL00200 18 IPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIV-I 96 (263)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEE-E
Confidence 334444466632 4567888999999999999854442 3456677899999999999999863 34433 1
Q ss_pred EecCCC--CCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCC
Q 008466 302 MMPDLP--NVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYR 355 (564)
Q Consensus 302 lI~GLP--get~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~ 355 (564)
|-|--| ..+.+.+.+.+. +.++|.+-+.-+-+.+..++.+.+++..+.
T Consensus 97 m~Y~N~i~~~G~e~F~~~~~------~aGvdgviipDLP~ee~~~~~~~~~~~gi~ 146 (263)
T CHL00200 97 FTYYNPVLHYGINKFIKKIS------QAGVKGLIIPDLPYEESDYLISVCNLYNIE 146 (263)
T ss_pred EecccHHHHhCHHHHHHHHH------HcCCeEEEecCCCHHHHHHHHHHHHHcCCC
Confidence 212111 225566655554 457999998887776666677666665543
No 309
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=55.43 E-value=1e+02 Score=30.69 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=36.7
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCC
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLP 307 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLP 307 (564)
...++.+.++|++.|++=.++.. ..+.++++.+++.|.++.+.+.+..|
T Consensus 78 ~~~i~~~~~~Gad~itvH~ea~~-------------~~~~~~l~~ik~~G~~~gval~p~t~ 126 (228)
T PTZ00170 78 EKWVDDFAKAGASQFTFHIEATE-------------DDPKAVARKIREAGMKVGVAIKPKTP 126 (228)
T ss_pred HHHHHHHHHcCCCEEEEeccCCc-------------hHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 46779999999999999666531 12566888889999988877764443
No 310
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=55.37 E-value=3.6e+02 Score=30.57 Aligned_cols=110 Identities=17% Similarity=0.171 Sum_probs=78.4
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHcCCcEEE---EEecCCCCCCHHHHHHHHHH
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRG--HTVAAVADCFCLAKDAGFKVVA---HMMPDLPNVGVERDLESFRE 320 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rg--ht~~~~~~ai~~lr~~G~~v~~---~lI~GLPget~e~~~~t~~~ 320 (564)
+..++.++++|..+|.+-+=+.+-.....+++. ...+.+.++++.+++.|..|.+ |++-|.- .+++.+.+.++.
T Consensus 84 d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r-~~~~~l~~~~~~ 162 (526)
T TIGR00977 84 DKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYK-ANPEYALATLAT 162 (526)
T ss_pred HHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeeccc-CCHHHHHHHHHH
Confidence 567899999999999998866666666677653 3446667789999999998765 4434432 456777777777
Q ss_pred HhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 321 FFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 321 ~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
+. +.+++.|.+- .|- | ...+++..+++..+.+.+|.
T Consensus 163 a~---~aGad~i~i~------DTv-------G---~~~P~~v~~li~~l~~~~~~ 198 (526)
T TIGR00977 163 AQ---QAGADWLVLC------DTN-------G---GTLPHEISEITTKVKRSLKQ 198 (526)
T ss_pred HH---hCCCCeEEEe------cCC-------C---CcCHHHHHHHHHHHHHhCCC
Confidence 76 5678877553 331 1 25678888888888888763
No 311
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=54.83 E-value=32 Score=34.57 Aligned_cols=64 Identities=20% Similarity=0.311 Sum_probs=47.1
Q ss_pred EEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEE
Q 008466 233 IGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA 300 (564)
Q Consensus 233 ~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~ 300 (564)
+.+++...|| .+.++.-++.|.++|+|=-....+..-. -.+..-.+.+.++.+.+++.|+.|+.
T Consensus 124 I~VSLFiDPd---~~qi~~A~~~GAd~VELhTG~Ya~a~~~-~~~~~el~~i~~aa~~a~~~GL~VnA 187 (234)
T cd00003 124 IRVSLFIDPD---PEQIEAAKEVGADRVELHTGPYANAYDK-AEREAELERIAKAAKLARELGLGVNA 187 (234)
T ss_pred CEEEEEeCCC---HHHHHHHHHhCcCEEEEechhhhcCCCc-hhHHHHHHHHHHHHHHHHHcCCEEec
Confidence 5788888998 8999999999999999976544332210 01112357788899999999998875
No 312
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=52.47 E-value=75 Score=31.92 Aligned_cols=104 Identities=21% Similarity=0.209 Sum_probs=64.8
Q ss_pred eCCC-CCHHHHHHHHHcCCCeEEEccCC------C---CHHHHHhcCCCCCHHHHHHHHHHHHHc-CCcEEEEEecCC-C
Q 008466 240 RPDY-CLGPHLRQMLSYGCTRLEIGVQS------T---YEDVARDTNRGHTVAAVADCFCLAKDA-GFKVVAHMMPDL-P 307 (564)
Q Consensus 240 rPd~-i~~e~L~~L~~~G~~rvsiGvQS------~---~d~vL~~i~Rght~~~~~~ai~~lr~~-G~~v~~~lI~GL-P 307 (564)
-|+. -..+.++.|.++|++.+++|+-. + .....+.++.|.+.+...+.++.+|+. .++ .++|.=+ |
T Consensus 10 ~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~p--v~lm~y~n~ 87 (242)
T cd04724 10 DPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIP--IVLMGYYNP 87 (242)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCC--EEEEEecCH
Confidence 4542 13467888999999999999433 2 123356788899999999999999975 444 4565432 2
Q ss_pred CC--CHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHc
Q 008466 308 NV--GVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKT 351 (564)
Q Consensus 308 ge--t~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~ 351 (564)
-- +.+.+.+.+. +.+++.+.+.-+.+..-.++.+..++
T Consensus 88 ~~~~G~~~fi~~~~------~aG~~giiipDl~~ee~~~~~~~~~~ 127 (242)
T cd04724 88 ILQYGLERFLRDAK------EAGVDGLIIPDLPPEEAEEFREAAKE 127 (242)
T ss_pred HHHhCHHHHHHHHH------HCCCcEEEECCCCHHHHHHHHHHHHH
Confidence 11 2355544443 35688888865544332334444444
No 313
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=52.46 E-value=96 Score=30.42 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=41.7
Q ss_pred CHHHHHHHHHcCCCeEEEccC----CCCHHHHHhcCCCCC-HHHHHHHHHHHHHcCC---cEEEEEecCCCCCCHHHHHH
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQ----STYEDVARDTNRGHT-VAAVADCFCLAKDAGF---KVVAHMMPDLPNVGVERDLE 316 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQ----S~~d~vL~~i~Rght-~~~~~~ai~~lr~~G~---~v~~~lI~GLPget~e~~~~ 316 (564)
+++.+..++++|+.-|-+-.. .++...-..+.=-.. .+.+.+-++.+.++|+ ++..|-.+|+ +-+.+..++
T Consensus 105 ~~~~~~l~a~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~Gi~~~~Ii~DPgigf-~~~~~~~~~ 183 (210)
T PF00809_consen 105 DPEMLPLAAEYGAPVVLMHSDGNPKGMPETADYRLDIAEEIIEFLEERIEALEKAGIPRERIILDPGIGF-GKDPEQNLE 183 (210)
T ss_dssp STTHHHHHHHHTSEEEEESESSETTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHTT--GGGEEEETTTTS-STTHHHHHH
T ss_pred cchhhhhhhcCCCEEEEEecccccccccccchhhhhHHHHHHHHHHHHHHHHHHcCCCHHHEeeccccCc-CCCHHHHHH
Confidence 567777888887755555443 222211111000000 1233344455667899 4888999998 777776666
Q ss_pred HHHHHh
Q 008466 317 SFREFF 322 (564)
Q Consensus 317 t~~~~~ 322 (564)
.++.+-
T Consensus 184 ~l~~i~ 189 (210)
T PF00809_consen 184 LLRNIE 189 (210)
T ss_dssp HHHTHH
T ss_pred HHHHHH
Confidence 665543
No 314
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=51.60 E-value=1.2e+02 Score=30.68 Aligned_cols=87 Identities=14% Similarity=0.134 Sum_probs=53.6
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCC-CCCHHHHHHHHHHHHHcCCcEEEEEec---CC-CCC-C---HHHHH
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNR-GHTVAAVADCFCLAKDAGFKVVAHMMP---DL-PNV-G---VERDL 315 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~R-ght~~~~~~ai~~lr~~G~~v~~~lI~---GL-Pge-t---~e~~~ 315 (564)
..+.++.++++|++.|++.+...+... +. ..+.+++.+.-+.++++|+++..-... .+ ++. + .+...
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~ 98 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDESDERL----ARLDWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQAL 98 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCccccch----hccCCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHH
Confidence 468999999999999999887644322 11 236677777788888999997542211 11 222 1 12223
Q ss_pred HHHHHHhcC-CCCCCCeEEEe
Q 008466 316 ESFREFFES-PLFRADGLKIY 335 (564)
Q Consensus 316 ~t~~~~~~~-~~l~pd~i~iy 335 (564)
+.++..++. ..++.+.|.+.
T Consensus 99 ~~~~~~i~~a~~lG~~~i~~~ 119 (283)
T PRK13209 99 EIMRKAIQLAQDLGIRVIQLA 119 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEEC
Confidence 334333333 36788888764
No 315
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=51.35 E-value=66 Score=32.63 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEE
Q 008466 242 DYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVV 299 (564)
Q Consensus 242 d~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~ 299 (564)
+.--.+.++.++++|++.|+|++-..+.. +..+ ..+.++..+..+.++++|+++.
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSVDETDDR-LSRL--DWSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecCCccch-hhcc--CCCHHHHHHHHHHHHHcCCCce
Confidence 44457899999999999999987654321 1111 3467788888889999999975
No 316
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=50.77 E-value=2.9e+02 Score=28.16 Aligned_cols=73 Identities=10% Similarity=0.134 Sum_probs=53.2
Q ss_pred EEEEeeCCCCCHHHHHHHHHcCCCeEEEccC-CCCHHHHHhcC---------CC--CCHHHHHHHHHHHHHcCCc-EE-E
Q 008466 235 MTIETRPDYCLGPHLRQMLSYGCTRLEIGVQ-STYEDVARDTN---------RG--HTVAAVADCFCLAKDAGFK-VV-A 300 (564)
Q Consensus 235 itiEtrPd~i~~e~L~~L~~~G~~rvsiGvQ-S~~d~vL~~i~---------Rg--ht~~~~~~ai~~lr~~G~~-v~-~ 300 (564)
+.+-|.| .+.+.++.+.+ .++.+-||-- ..|.+.|+.+. || .|.+++..|++.+++.|-+ +. +
T Consensus 80 l~~~Tev--~d~~~v~~~~e-~vdilqIgs~~~~n~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~ 156 (250)
T PRK13397 80 LLSVSEI--MSERQLEEAYD-YLDVIQVGARNMQNFEFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILC 156 (250)
T ss_pred CCEEEee--CCHHHHHHHHh-cCCEEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 4444544 57889999988 5999999874 44556666653 45 4889999999999999985 43 4
Q ss_pred E-EecCCCCCC
Q 008466 301 H-MMPDLPNVG 310 (564)
Q Consensus 301 ~-lI~GLPget 310 (564)
| =+.++|..+
T Consensus 157 eRg~~~Y~~~~ 167 (250)
T PRK13397 157 ERGVRGYDVET 167 (250)
T ss_pred ccccCCCCCcc
Confidence 5 567888653
No 317
>PRK01060 endonuclease IV; Provisional
Probab=50.08 E-value=2.3e+02 Score=28.55 Aligned_cols=89 Identities=13% Similarity=0.122 Sum_probs=54.2
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCc---EEEEE--ecCCCCCCHH---HHHH
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFK---VVAHM--MPDLPNVGVE---RDLE 316 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~---v~~~l--I~GLPget~e---~~~~ 316 (564)
-++.++.++++|++.|+|-+.+... ......+.+++.+.-+.+.+.|+. +.+|. ...+-..+++ ..++
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~----~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~ 89 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQ----WKRKPLEELNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKSRD 89 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCC----CcCCCCCHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHHHH
Confidence 5788999999999999998764321 113345777777777788899998 54443 2223222222 1222
Q ss_pred HHHHHhcC-CCCCCCeEEEeee
Q 008466 317 SFREFFES-PLFRADGLKIYPT 337 (564)
Q Consensus 317 t~~~~~~~-~~l~pd~i~iy~l 337 (564)
.++..++. ..+++..|.+++-
T Consensus 90 ~~~~~i~~A~~lga~~vv~h~G 111 (281)
T PRK01060 90 FLIQEIERCAALGAKLLVFHPG 111 (281)
T ss_pred HHHHHHHHHHHcCCCEEEEcCC
Confidence 23333322 3678888888753
No 318
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=49.97 E-value=2.8e+02 Score=28.45 Aligned_cols=109 Identities=12% Similarity=0.025 Sum_probs=72.8
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCC
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESP 325 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~ 325 (564)
..+++.|.+.|++-|-++=-++.-. -.|.++..+.++.+.+. .+-...+|.|.-+.+.++.++.++.+.
T Consensus 25 ~~~i~~l~~~Gv~gi~~~Gs~GE~~-------~ls~~Er~~~~~~~~~~-~~~~~~vi~gv~~~~~~~~i~~a~~a~--- 93 (292)
T PRK03170 25 RKLVDYLIANGTDGLVVVGTTGESP-------TLTHEEHEELIRAVVEA-VNGRVPVIAGTGSNSTAEAIELTKFAE--- 93 (292)
T ss_pred HHHHHHHHHcCCCEEEECCcCCccc-------cCCHHHHHHHHHHHHHH-hCCCCcEEeecCCchHHHHHHHHHHHH---
Confidence 4677788888999998764443211 24667777777777775 121245788887778888888887775
Q ss_pred CCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEe
Q 008466 326 LFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVY 380 (564)
Q Consensus 326 ~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~ 380 (564)
++++|.+-+.|- . |.++++++.++.+..+.+..+--+.+|
T Consensus 94 ~~G~d~v~~~pP-------~--------~~~~~~~~i~~~~~~ia~~~~~pv~lY 133 (292)
T PRK03170 94 KAGADGALVVTP-------Y--------YNKPTQEGLYQHFKAIAEATDLPIILY 133 (292)
T ss_pred HcCCCEEEECCC-------c--------CCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 578898877542 1 223577888888887777654334454
No 319
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=49.33 E-value=32 Score=38.15 Aligned_cols=63 Identities=13% Similarity=0.099 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCH-----------HHHH--------hcC-CCCCHHHHHHHHHHHHHcCCcEEEEEecC
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYE-----------DVAR--------DTN-RGHTVAAVADCFCLAKDAGFKVVAHMMPD 305 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d-----------~vL~--------~i~-Rght~~~~~~ai~~lr~~G~~v~~~lI~G 305 (564)
.++|+.|+++|++.|-|.+=.-+. +..+ .++ +=-|.+++.+.++.+++.|++|.+|+.++
T Consensus 25 ~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D~V~N 104 (479)
T PRK09441 25 AERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYADVVLN 104 (479)
T ss_pred HHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 468999999999999998843322 1111 122 22388999999999999999999999887
Q ss_pred CCC
Q 008466 306 LPN 308 (564)
Q Consensus 306 LPg 308 (564)
-=+
T Consensus 105 H~~ 107 (479)
T PRK09441 105 HKA 107 (479)
T ss_pred ccc
Confidence 644
No 320
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=48.31 E-value=1e+02 Score=30.31 Aligned_cols=40 Identities=3% Similarity=0.108 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEecCCCcHHHHhhCCCee
Q 008466 514 YGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYEL 554 (564)
Q Consensus 514 iG~~Lm~~aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~ 554 (564)
+...|+..+-++|.. +|++.+...........++++||..
T Consensus 123 ~~~~L~~~~~~~a~~-~Gi~~~~~v~~~~~~r~l~r~G~~~ 162 (207)
T PRK13834 123 ATLTMFAGIIEWSMA-NGYTEIVTATDLRFERILARAGWPM 162 (207)
T ss_pred HHHHHHHHHHHHHHH-CCCCEEEEEECHHHHHHHHHcCCCe
Confidence 667899999999999 5999997666667778999999865
No 321
>PRK03906 mannonate dehydratase; Provisional
Probab=47.66 E-value=63 Score=34.99 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEE--------EEecCCCC
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA--------HMMPDLPN 308 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~--------~lI~GLPg 308 (564)
+..|..+++.|++.|--.+-... .+.--+.+++.+--+.+.++|+...+ +++.|+|+
T Consensus 13 ~~~l~~~rQ~G~~~iv~~l~~~~------~g~~W~~~~i~~~~~~ie~~Gl~~~vvEs~pv~~~Ik~g~~~ 77 (385)
T PRK03906 13 PVTLEDIRQPGATGIVTALHDIP------VGEVWPVEEILARKAEIEAAGLEWSVVESVPVHEDIKTGTPN 77 (385)
T ss_pred cchHHHHhcCCCCceeecCCCCC------CCCCCCHHHHHHHHHHHHHcCCeEEEEeCCCccHHHHcCCCC
Confidence 34555555566665555443322 23344556666666666666655332 55566554
No 322
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=47.25 E-value=33 Score=35.65 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=45.1
Q ss_pred cccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEecCCCcHHHHhhCCCeee
Q 008466 500 PVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELE 555 (564)
Q Consensus 500 ~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~~ 555 (564)
.|++. +||-|+.-+|+.++-+.|-+ .|...+-+-+...-..|++.+||...
T Consensus 63 Avs~s----~qGeGl~lkl~TeLin~ay~-~g~~hLFiyTKp~~~~lFk~~GF~~i 113 (352)
T COG3053 63 AVSES----LQGEGLALKLVTELINLAYE-RGRTHLFIYTKPEYAALFKQCGFSEI 113 (352)
T ss_pred Eechh----cccccHHHHHHHHHHHHHHH-cCCceEEEEechhHHHHHHhCCceEe
Confidence 45655 99999999999999999999 59999988888888999999999764
No 323
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=46.66 E-value=1.1e+02 Score=30.84 Aligned_cols=89 Identities=10% Similarity=0.023 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEe------cCCCCCCHH---HH
Q 008466 244 CLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMM------PDLPNVGVE---RD 314 (564)
Q Consensus 244 i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI------~GLPget~e---~~ 314 (564)
-.++.++.++++|++.|++..-... ...-..+..++.+.-+.+.++|+++..... +++...+.+ ..
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~-----~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~ 88 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPH-----AFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRES 88 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCcc-----ccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHH
Confidence 3578999999999999999632110 011122345666677788899999764211 111111222 22
Q ss_pred HHHHHHHhcC-CCCCCCeEEEeee
Q 008466 315 LESFREFFES-PLFRADGLKIYPT 337 (564)
Q Consensus 315 ~~t~~~~~~~-~~l~pd~i~iy~l 337 (564)
++.++..++. ..++.+.|.+.+.
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~ 112 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAA 112 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCC
Confidence 3333333333 4678888877653
No 324
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=46.33 E-value=27 Score=35.24 Aligned_cols=75 Identities=19% Similarity=0.246 Sum_probs=45.1
Q ss_pred cEEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCC--HHHHHHHHHHHHHcCCcEEEEEecCCCCC
Q 008466 232 CIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHT--VAAVADCFCLAKDAGFKVVAHMMPDLPNV 309 (564)
Q Consensus 232 ~~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght--~~~~~~ai~~lr~~G~~v~~~lI~GLPge 309 (564)
.+.+++...|| .+.++.-++.|+++|+|=--...+..- .-.+... .+.+.++.+.+++.|+.|+.. -||-.+
T Consensus 124 gIrvSLFiDP~---~~qi~~A~~~Gad~VELhTG~yA~a~~-~~~~~~~ell~~l~~aa~~a~~lGL~VnAG--HgL~y~ 197 (239)
T PF03740_consen 124 GIRVSLFIDPD---PEQIEAAKELGADRVELHTGPYANAFD-DAEEAEEELLERLRDAARYAHELGLGVNAG--HGLNYD 197 (239)
T ss_dssp T-EEEEEE-S----HHHHHHHHHTT-SEEEEETHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHTT-EEEEE--TT--TT
T ss_pred CCEEEEEeCCC---HHHHHHHHHcCCCEEEEehhHhhhhcC-CHHHHHHHHHHHHHHHHHHHHHcCCEEecC--CCCCHH
Confidence 36788889998 999999999999999996532221110 0000011 467888999999999988762 256555
Q ss_pred CHH
Q 008466 310 GVE 312 (564)
Q Consensus 310 t~e 312 (564)
+..
T Consensus 198 N~~ 200 (239)
T PF03740_consen 198 NVR 200 (239)
T ss_dssp THH
T ss_pred HHH
Confidence 544
No 325
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=46.06 E-value=30 Score=31.56 Aligned_cols=61 Identities=11% Similarity=0.108 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCCCeEEE-----ccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCC
Q 008466 246 GPHLRQMLSYGCTRLEI-----GVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDL 306 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsi-----GvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GL 306 (564)
++.++.|+++|++.|-+ |.=+.++.-+-..+.+-+.+=+-+.++.+++.|++|.+.+=++.
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~~ 68 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFSW 68 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeeec
Confidence 46788999999999999 45566666666666666645557899999999999988776653
No 326
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=45.72 E-value=54 Score=31.87 Aligned_cols=60 Identities=20% Similarity=0.288 Sum_probs=36.3
Q ss_pred eEEEEEEe-ecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHh
Q 008466 450 WETFLSYE-DTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALG 528 (564)
Q Consensus 450 ~e~fls~~-d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~ 528 (564)
-.+|+-.+ |.....+|||..=.+.+.. .-.|. =+.+-.. ||++|+|+.|++..=..++.
T Consensus 52 F~FYVl~e~d~~g~h~vGyFSKEk~s~~------------~~NLs----CIl~lP~----yQrkGyG~~LI~fSY~LSr~ 111 (188)
T PF01853_consen 52 FLFYVLTEKDDDGFHIVGYFSKEKESWD------------NNNLS----CILTLPP----YQRKGYGRFLIDFSYELSRR 111 (188)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEESS-TT-------------EEES----EEEE-GG----GTTSSHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEecCccceeEEEEEEEecccC------------CeeEe----ehhhcch----hhhcchhhhhhhhHHHHhhc
Confidence 34444443 3333478999986644310 01111 0224444 99999999999999999988
Q ss_pred c
Q 008466 529 E 529 (564)
Q Consensus 529 ~ 529 (564)
+
T Consensus 112 e 112 (188)
T PF01853_consen 112 E 112 (188)
T ss_dssp T
T ss_pred c
Confidence 6
No 327
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=45.72 E-value=13 Score=30.24 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=17.4
Q ss_pred ccCCCchhhhhcCHHHHHHHHHHHH
Q 008466 501 VHGREADKLQHQGYGTLLMEEAERI 525 (564)
Q Consensus 501 v~~~~~~~~q~~GiG~~Lm~~aE~~ 525 (564)
|+.. +|++||+++||+.|-.-
T Consensus 13 V~~~----~RR~GIAt~Lld~ar~~ 33 (70)
T PF13880_consen 13 VSPS----HRRKGIATRLLDAAREN 33 (70)
T ss_pred eChh----hhhhhHHHHHHHHHHHh
Confidence 5666 99999999999988544
No 328
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=45.71 E-value=2.6e+02 Score=29.99 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=43.1
Q ss_pred EEEEEeeCCCCCHHHHHHHHHcCCCeEEEccC-CCCHHHHHhcC---------CC--CCHHHHHHHHHHHHHcCCc
Q 008466 234 GMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQ-STYEDVARDTN---------RG--HTVAAVADCFCLAKDAGFK 297 (564)
Q Consensus 234 eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQ-S~~d~vL~~i~---------Rg--ht~~~~~~ai~~lr~~G~~ 297 (564)
++.+-+.| .+.+.++.+.++ +..+-||=- ..|-..|+.+. || .|.+++..|++.+.+.|-+
T Consensus 182 Gl~~~t~v--~d~~~~~~l~~~-vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~ 254 (360)
T PRK12595 182 GLAVISEI--VNPADVEVALDY-VDVIQIGARNMQNFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGNG 254 (360)
T ss_pred CCCEEEee--CCHHHHHHHHHh-CCeEEECcccccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCC
Confidence 45556655 578899999999 999999864 44455566543 45 3778888888888777764
No 329
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=45.61 E-value=3.7e+02 Score=27.96 Aligned_cols=114 Identities=15% Similarity=0.060 Sum_probs=82.7
Q ss_pred CCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCC----CCHHHHHHHHHHHHH-cCCcEEEEEecCCCCCCHHHHH
Q 008466 241 PDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRG----HTVAAVADCFCLAKD-AGFKVVAHMMPDLPNVGVERDL 315 (564)
Q Consensus 241 Pd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rg----ht~~~~~~ai~~lr~-~G~~v~~~lI~GLPget~e~~~ 315 (564)
|...+.-......++|+.-|.++= --+-..++.. .|.+++.+.++.+-+ ..++|.+|+=.|+ |+ .....
T Consensus 23 pg~~d~~sA~la~~aGF~al~~sg----~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGf-G~-~~nva 96 (289)
T COG2513 23 PGAWDAGSALLAERAGFKALYLSG----AGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGF-GE-ALNVA 96 (289)
T ss_pred cCCcCHHHHHHHHHcCCeEEEecc----HHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCC-Cc-HHHHH
Confidence 555678888899999998877642 2222245542 358888888888877 4889999999999 66 88899
Q ss_pred HHHHHHhcCCCCCCCeEEEeeeeec------CCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 316 ESFREFFESPLFRADGLKIYPTLVI------RGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 316 ~t~~~~~~~~~l~pd~i~iy~l~v~------~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
++++.+. ..+...+.|---..- +|.+ .++.++.++.+.-+.+.-+
T Consensus 97 rtV~~~~---~aG~agi~iEDq~~pk~cgh~~gk~-----------l~~~~e~v~rIkAa~~a~~ 147 (289)
T COG2513 97 RTVRELE---QAGAAGIHIEDQVGPKRCGHLPGKE-----------LVSIDEMVDRIKAAVEARR 147 (289)
T ss_pred HHHHHHH---HcCcceeeeeecccchhcCCCCCCC-----------cCCHHHHHHHHHHHHHhcc
Confidence 9999987 466777766532221 3333 4688999999998888765
No 330
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=45.55 E-value=1.8e+02 Score=29.15 Aligned_cols=87 Identities=13% Similarity=0.159 Sum_probs=52.0
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecC---CC--CCCH---HHHHHH
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPD---LP--NVGV---ERDLES 317 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~G---LP--get~---e~~~~t 317 (564)
++.++.++++|++.|++.+-...+.. ..-..+.++..+.-+.++++|+++.+-...+ +| ..+. +..++.
T Consensus 19 ~e~~~~~~~~G~~~iEl~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~ 95 (284)
T PRK13210 19 EERLVFAKELGFDFVEMSVDESDERL---ARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEI 95 (284)
T ss_pred HHHHHHHHHcCCCeEEEecCCccccc---ccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHH
Confidence 68999999999999999764322111 0112355677777888999999976422111 11 1122 223344
Q ss_pred HHHHhcC-CCCCCCeEEEe
Q 008466 318 FREFFES-PLFRADGLKIY 335 (564)
Q Consensus 318 ~~~~~~~-~~l~pd~i~iy 335 (564)
++.+++. ..++.+.|.+.
T Consensus 96 ~~~~i~~a~~lG~~~v~~~ 114 (284)
T PRK13210 96 MKKAIRLAQDLGIRTIQLA 114 (284)
T ss_pred HHHHHHHHHHhCCCEEEEC
Confidence 4444433 46888888753
No 331
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=45.18 E-value=2.1e+02 Score=29.40 Aligned_cols=124 Identities=19% Similarity=0.183 Sum_probs=77.9
Q ss_pred eeCCC-CCHHHHHHHHHcCCCeEEEccCCCCH---------HHHHhcCCCCCHHHHHHHHHHHHHcCCc--EEEEEecCC
Q 008466 239 TRPDY-CLGPHLRQMLSYGCTRLEIGVQSTYE---------DVARDTNRGHTVAAVADCFCLAKDAGFK--VVAHMMPDL 306 (564)
Q Consensus 239 trPd~-i~~e~L~~L~~~G~~rvsiGvQS~~d---------~vL~~i~Rght~~~~~~ai~~lr~~G~~--v~~~lI~GL 306 (564)
..|+. -+.+.+..|.+.|++-+++|+=.-|+ ..++.++.|.|.+++.+.++.+++.+.+ ++.-.-+++
T Consensus 26 GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Np 105 (265)
T COG0159 26 GDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNP 105 (265)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccH
Confidence 35552 25678888899999999999965543 4577889999999999999999987765 332222222
Q ss_pred -CCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCC------CCCHHHHHHHHHH
Q 008466 307 -PNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYR------NYPPEQLVDIVAR 368 (564)
Q Consensus 307 -Pget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~------~~~~ee~~~~~~~ 368 (564)
.....+.+.+.+. +.++|++-+=-|-+....++....++-.+. |-++++.++.+..
T Consensus 106 i~~~Gie~F~~~~~------~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~ 168 (265)
T COG0159 106 IFNYGIEKFLRRAK------EAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAE 168 (265)
T ss_pred HHHhhHHHHHHHHH------HcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH
Confidence 1234455444443 356888766555555555555555544332 3345555555543
No 332
>PLN02591 tryptophan synthase
Probab=45.18 E-value=1.3e+02 Score=30.57 Aligned_cols=110 Identities=16% Similarity=0.187 Sum_probs=67.2
Q ss_pred EEEEeeCCCC-CHHHHHHHHHcCCCeEEEccCCCCH---------HHHHhcCCCCCHHHHHHHHHHHHHc-CCcEEEEEe
Q 008466 235 MTIETRPDYC-LGPHLRQMLSYGCTRLEIGVQSTYE---------DVARDTNRGHTVAAVADCFCLAKDA-GFKVVAHMM 303 (564)
Q Consensus 235 itiEtrPd~i-~~e~L~~L~~~G~~rvsiGvQS~~d---------~vL~~i~Rght~~~~~~ai~~lr~~-G~~v~~~lI 303 (564)
+..-..||.= +.+.+..|.+.|++-|+||+=.-|+ ...+.+..|.|.+++.+.++.+|+. .+++. -|-
T Consensus 7 yi~aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~i-lm~ 85 (250)
T PLN02591 7 YITAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIV-LFT 85 (250)
T ss_pred EEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEE-EEe
Confidence 3344466632 4567888999999999999965442 4566788899999999999999853 33433 121
Q ss_pred cCCC--CCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHc
Q 008466 304 PDLP--NVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKT 351 (564)
Q Consensus 304 ~GLP--get~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~ 351 (564)
|--| ..+.+++.+.+. +.+.|.+-+-.|-+.+..++.+..++
T Consensus 86 Y~N~i~~~G~~~F~~~~~------~aGv~GviipDLP~ee~~~~~~~~~~ 129 (250)
T PLN02591 86 YYNPILKRGIDKFMATIK------EAGVHGLVVPDLPLEETEALRAEAAK 129 (250)
T ss_pred cccHHHHhHHHHHHHHHH------HcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 1111 224555554444 35678876554444334444444333
No 333
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=44.64 E-value=76 Score=33.97 Aligned_cols=61 Identities=28% Similarity=0.472 Sum_probs=34.7
Q ss_pred eCCCeEEEEEEeec--CCCeE---EEEEEEEecCCCC--CccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHH
Q 008466 446 ANEGWETFLSYEDT--RQDIL---VGLLRLRKCGRNV--TCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLL 518 (564)
Q Consensus 446 a~gg~e~fls~~d~--~~~~l---vG~lrlr~~~~~~--~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~L 518 (564)
+..-|.+|++||-. +.+.+ +|+..+=.-...+ .|+-++. ..|... |||+|+|.+|
T Consensus 177 tde~w~~~lv~EK~~~d~~~ly~~~gy~tiyk~y~yid~~R~RiSQ--------------mlilpP----fq~~Glgs~l 238 (403)
T KOG2696|consen 177 TDECWLIYLVYEKKEEDGDTLYAYVGYYTIYKFYEYIDRIRPRISQ--------------MLILPP----FQGKGLGSQL 238 (403)
T ss_pred CCCceEEEEeeeecccCCceeEeeeeeEEEeehhhhhhhhhhhhhe--------------eEEecc----ccCCchHHHH
Confidence 34558888888765 22333 4444332222111 3333332 224555 9999999999
Q ss_pred HHHHHH
Q 008466 519 MEEAER 524 (564)
Q Consensus 519 m~~aE~ 524 (564)
|+..-+
T Consensus 239 ~E~i~r 244 (403)
T KOG2696|consen 239 YEAIAR 244 (403)
T ss_pred HHHHHH
Confidence 998863
No 334
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=44.62 E-value=4.9e+02 Score=29.06 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=73.5
Q ss_pred eeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEE-EEecCCCCCCHHHHHHH
Q 008466 239 TRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA-HMMPDLPNVGVERDLES 317 (564)
Q Consensus 239 trPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~-~lI~GLPget~e~~~~t 317 (564)
-.||.+-+..++...+.|++.+-+.= .+| .++....+++.+|+.|..+.. .-..+-|-.|.+-+.+.
T Consensus 101 ~ypddvv~~fv~~a~~~Gidi~Rifd---------~ln---d~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~ 168 (468)
T PRK12581 101 HYADDIVDKFISLSAQNGIDVFRIFD---------ALN---DPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSL 168 (468)
T ss_pred CCcchHHHHHHHHHHHCCCCEEEEcc---------cCC---CHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHH
Confidence 35677888889999999998776643 333 678889999999999998543 33335688888888888
Q ss_pred HHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 318 FREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 318 ~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
++.+. +.+++.|.|- .| .| .+++++..+++..+++.
T Consensus 169 a~~l~---~~Gad~I~Ik------Dt-------aG---~l~P~~v~~Lv~alk~~ 204 (468)
T PRK12581 169 VKELV---EMGADSICIK------DM-------AG---ILTPKAAKELVSGIKAM 204 (468)
T ss_pred HHHHH---HcCCCEEEEC------CC-------CC---CcCHHHHHHHHHHHHhc
Confidence 88876 5678876542 22 12 25677777777777664
No 335
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=44.62 E-value=3.4e+02 Score=27.72 Aligned_cols=109 Identities=11% Similarity=0.018 Sum_probs=71.8
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCC
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESP 325 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~ 325 (564)
..+++.+.+.|++-|-++=-|+-- --.|.++..+.++.+.+. .+-...+|.|.-..+.++.++..+.+.
T Consensus 22 ~~~i~~l~~~Gv~Gi~~~GstGE~-------~~Ls~~Er~~~~~~~~~~-~~~~~~vi~gv~~~s~~~~i~~a~~a~--- 90 (285)
T TIGR00674 22 EKLIDFQIENGTDAIVVVGTTGES-------PTLSHEEHKKVIEFVVDL-VNGRVPVIAGTGSNATEEAISLTKFAE--- 90 (285)
T ss_pred HHHHHHHHHcCCCEEEECccCccc-------ccCCHHHHHHHHHHHHHH-hCCCCeEEEeCCCccHHHHHHHHHHHH---
Confidence 456777788899999875444311 123667777777776664 111245778887777787777777775
Q ss_pred CCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEe
Q 008466 326 LFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVY 380 (564)
Q Consensus 326 ~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~ 380 (564)
+.+.|.+.+.| |. |-++++++.++.+..+.+..+--+-+|
T Consensus 91 ~~Gad~v~v~p-------P~--------y~~~~~~~i~~~~~~i~~~~~~pi~lY 130 (285)
T TIGR00674 91 DVGADGFLVVT-------PY--------YNKPTQEGLYQHFKAIAEEVDLPIILY 130 (285)
T ss_pred HcCCCEEEEcC-------Cc--------CCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 67899987764 22 224678888888888777654334455
No 336
>smart00876 BATS Biotin and Thiamin Synthesis associated domain. Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer PUBMED:12482614. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimerPUBMED:12650933. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers PUBMED:12482614, PUBMED:12650933. This domain therefore may be involved in co-factor binding or dimerisation.
Probab=44.14 E-value=30 Score=29.42 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=30.0
Q ss_pred EeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 334 IYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 334 iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
+..+.+.+||||++. ...++.++++..++.+.-.+|.
T Consensus 2 in~l~P~~gTp~~~~-----~~~~~~~~~l~~ia~~Rl~~P~ 38 (94)
T smart00876 2 INRLRPIEGTPLEDP-----PPPVSPEEFLRTIAAARLALPD 38 (94)
T ss_pred CCccccCCCCCcccC-----CCCCCHHHHHHHHHHHHHHCCC
Confidence 457889999999641 2568999999999999888874
No 337
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=43.44 E-value=3.6e+02 Score=27.23 Aligned_cols=109 Identities=13% Similarity=0.058 Sum_probs=73.4
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCC
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESP 325 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~ 325 (564)
.++++.|.+.|++.|-++=-|+--. ..|.++..+.++.+.+.. +-..-+|.|..+.+.++..+..+.+.
T Consensus 21 ~~~i~~l~~~Gv~gi~~~GstGE~~-------~ls~~Er~~l~~~~~~~~-~~~~~vi~gv~~~~~~~~i~~a~~a~--- 89 (281)
T cd00408 21 RRLVEFLIEAGVDGLVVLGTTGEAP-------TLTDEERKEVIEAVVEAV-AGRVPVIAGVGANSTREAIELARHAE--- 89 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCCcccc-------cCCHHHHHHHHHHHHHHh-CCCCeEEEecCCccHHHHHHHHHHHH---
Confidence 5677888888999998776554222 236677777787777652 11245788888888887777777775
Q ss_pred CCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEe
Q 008466 326 LFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVY 380 (564)
Q Consensus 326 ~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~ 380 (564)
+.+.|.+-+.|- . |.+++++++++.+..+.+..+--+-+|
T Consensus 90 ~~Gad~v~v~pP-------~--------y~~~~~~~~~~~~~~ia~~~~~pi~iY 129 (281)
T cd00408 90 EAGADGVLVVPP-------Y--------YNKPSQEGIVAHFKAVADASDLPVILY 129 (281)
T ss_pred HcCCCEEEECCC-------c--------CCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 578998887542 2 223678888888887777643233444
No 338
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=42.96 E-value=75 Score=29.09 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=31.5
Q ss_pred HHHHcCCCeEEEccCCCCHHHHHhcC------------CCCCHHHHHHHHHHHHHcCCc
Q 008466 251 QMLSYGCTRLEIGVQSTYEDVARDTN------------RGHTVAAVADCFCLAKDAGFK 297 (564)
Q Consensus 251 ~L~~~G~~rvsiGvQS~~d~vL~~i~------------Rght~~~~~~ai~~lr~~G~~ 297 (564)
.|+..|+.-+.+|.+...+++.+.+. .+++...+.+.++.+++.|+.
T Consensus 26 ~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~ 84 (137)
T PRK02261 26 ALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLG 84 (137)
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCC
Confidence 44455666666666666566555432 246778888889999988775
No 339
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=42.85 E-value=87 Score=31.14 Aligned_cols=42 Identities=14% Similarity=0.036 Sum_probs=29.1
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEE
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA 300 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~ 300 (564)
-++.++.++++|++.|++... . ..+. .+..++++++|+++..
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~-~----------~~~~---~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFP-Y----------DWDA---EALKARLAAAGLEQVL 57 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCC-c----------cCCH---HHHHHHHHHcCCeEEE
Confidence 367889999999999999641 0 1233 3345567789998764
No 340
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=42.75 E-value=77 Score=35.82 Aligned_cols=68 Identities=16% Similarity=0.077 Sum_probs=49.3
Q ss_pred HHHHHHHHcCCCeEEEccC--CCC-H---HHHH--hcCC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHH
Q 008466 247 PHLRQMLSYGCTRLEIGVQ--STY-E---DVAR--DTNR-GHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERD 314 (564)
Q Consensus 247 e~L~~L~~~G~~rvsiGvQ--S~~-d---~vL~--~i~R-ght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~ 314 (564)
++|+.|+++|++.|.|.+= |.. + .+.. .+.. --|.+++.+.++.+++.|++|.+|+.++--+...+-+
T Consensus 32 ~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH~s~~~~~f 108 (539)
T TIGR02456 32 SKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNHTSDQHPWF 108 (539)
T ss_pred HhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEeccCcCCCCCHHH
Confidence 5789999999999988862 211 0 1111 2332 2367999999999999999999999999776655433
No 341
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=41.64 E-value=51 Score=37.33 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCH--------HH-HHhcC-CCCCHHHHHHHHHHHHHcCCcEEEEEecC
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYE--------DV-ARDTN-RGHTVAAVADCFCLAKDAGFKVVAHMMPD 305 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d--------~v-L~~i~-Rght~~~~~~ai~~lr~~G~~v~~~lI~G 305 (564)
.+.|+.|+++|+|.|.|.+=.-.+ -+ +-.+. +--|.+++.+.++.+++.||+|++|+.++
T Consensus 114 ~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 114 IEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred HHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 357999999999999988732111 11 11222 22367999999999999999999999887
No 342
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=41.55 E-value=53 Score=37.20 Aligned_cols=66 Identities=17% Similarity=0.105 Sum_probs=48.2
Q ss_pred HHHHHHHHcCCCeEEEccC--CCC-----H-HHHHhcCC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHH
Q 008466 247 PHLRQMLSYGCTRLEIGVQ--STY-----E-DVARDTNR-GHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVE 312 (564)
Q Consensus 247 e~L~~L~~~G~~rvsiGvQ--S~~-----d-~vL~~i~R-ght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e 312 (564)
++|+.|+++|++.|.|.+= |.. + .-+..+.. --|.+++.+.++.+++.|++|..|+++.-=+.+..
T Consensus 31 ~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~~~~~~ 105 (543)
T TIGR02403 31 EKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHTSTEHE 105 (543)
T ss_pred HhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECccccccchH
Confidence 6789999999999999872 211 1 11112222 34789999999999999999999999987655443
No 343
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=41.07 E-value=4e+02 Score=26.97 Aligned_cols=102 Identities=16% Similarity=0.187 Sum_probs=67.9
Q ss_pred EEEEEE-c--CCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCC--CHHHHHHHHHcC
Q 008466 182 VEFILM-G--GTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYC--LGPHLRQMLSYG 256 (564)
Q Consensus 182 ve~I~~-G--GTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i--~~e~L~~L~~~G 256 (564)
+..|+. | |.+.+|+.+...++++.+.+..++ .+.+-+.+...+. .-+..+...++|
T Consensus 32 v~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~-------------------~~~vi~gv~~~~~~~~i~~a~~a~~~G 92 (281)
T cd00408 32 VDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAG-------------------RVPVIAGVGANSTREAIELARHAEEAG 92 (281)
T ss_pred CCEEEECCCCcccccCCHHHHHHHHHHHHHHhCC-------------------CCeEEEecCCccHHHHHHHHHHHHHcC
Confidence 666753 3 567889999999999988876542 1334444433322 345566777789
Q ss_pred CCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc-CCcEEEEEecCCCCCCH
Q 008466 257 CTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA-GFKVVAHMMPDLPNVGV 311 (564)
Q Consensus 257 ~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~-G~~v~~~lI~GLPget~ 311 (564)
++.+.+-.-.... .+.+++.+-++.+.++ ++++..+-+++..|-+.
T Consensus 93 ad~v~v~pP~y~~---------~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l 139 (281)
T cd00408 93 ADGVLVVPPYYNK---------PSQEGIVAHFKAVADASDLPVILYNIPGRTGVDL 139 (281)
T ss_pred CCEEEECCCcCCC---------CCHHHHHHHHHHHHhcCCCCEEEEECccccCCCC
Confidence 9999997765422 4667888887777764 67777777776555443
No 344
>PRK10785 maltodextrin glucosidase; Provisional
Probab=40.74 E-value=70 Score=36.70 Aligned_cols=66 Identities=15% Similarity=0.067 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCH-------HHHHhcCCC-CCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCH
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYE-------DVARDTNRG-HTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGV 311 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d-------~vL~~i~Rg-ht~~~~~~ai~~lr~~G~~v~~~lI~GLPget~ 311 (564)
.++|+.|+++||+.|.|.+=--+. .-...++.. -|.+++.+.++.+++.||+|..|+.++--|.+.
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~ 255 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSH 255 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCC
Confidence 578999999999999999832221 112223332 267899999999999999999999998777653
No 345
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=40.66 E-value=4.2e+02 Score=27.13 Aligned_cols=109 Identities=12% Similarity=0.109 Sum_probs=73.1
Q ss_pred HHHHHHHHHc-CCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcC
Q 008466 246 GPHLRQMLSY-GCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFES 324 (564)
Q Consensus 246 ~e~L~~L~~~-G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~ 324 (564)
..+++.+.+. |++-|-++--|+--. --|.++-.+.++.+.++- .-..-+|.|....+.++..+..+.+.
T Consensus 24 ~~~i~~l~~~~Gv~gi~~~GstGE~~-------~Lt~~Er~~~~~~~~~~~-~~~~~viagv~~~~~~~ai~~a~~a~-- 93 (288)
T cd00954 24 RAIVDYLIEKQGVDGLYVNGSTGEGF-------LLSVEERKQIAEIVAEAA-KGKVTLIAHVGSLNLKESQELAKHAE-- 93 (288)
T ss_pred HHHHHHHHhcCCCCEEEECcCCcCcc-------cCCHHHHHHHHHHHHHHh-CCCCeEEeccCCCCHHHHHHHHHHHH--
Confidence 4567777788 999998877544221 135677777777666641 11356888997777888888887775
Q ss_pred CCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC-CceEEe
Q 008466 325 PLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP-PWTRVY 380 (564)
Q Consensus 325 ~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp-~~iri~ 380 (564)
+.+.|.+-+.| |. |-++++++..+.+..+.+..| --+-+|
T Consensus 94 -~~Gad~v~~~~-------P~--------y~~~~~~~i~~~~~~v~~a~~~lpi~iY 134 (288)
T cd00954 94 -ELGYDAISAIT-------PF--------YYKFSFEEIKDYYREIIAAAASLPMIIY 134 (288)
T ss_pred -HcCCCEEEEeC-------CC--------CCCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 57889887654 22 223678888888888887773 234444
No 346
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=40.19 E-value=1.6e+02 Score=29.82 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=60.1
Q ss_pred EEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHH-hcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHH
Q 008466 234 GMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVAR-DTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVE 312 (564)
Q Consensus 234 eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~-~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e 312 (564)
++.+|..|. +|.++...+.--+++.+-++.-.+-+=+ -++=....+.+...++.++++|+.|+..+= | +.
T Consensus 67 ~lNlE~a~~---~em~~ia~~~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFid---P--~~- 137 (239)
T PRK05265 67 ELNLEMAAT---EEMLDIALEVKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFID---P--DP- 137 (239)
T ss_pred CEEeccCCC---HHHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeC---C--CH-
Confidence 677887774 7899999998889999988765444311 011112347788899999999998887652 2 22
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEee
Q 008466 313 RDLESFREFFESPLFRADGLKIYP 336 (564)
Q Consensus 313 ~~~~t~~~~~~~~~l~pd~i~iy~ 336 (564)
+.++... +++.|.|-+|.
T Consensus 138 ---~qi~~A~---~~GAd~VELhT 155 (239)
T PRK05265 138 ---EQIEAAA---EVGADRIELHT 155 (239)
T ss_pred ---HHHHHHH---HhCcCEEEEec
Confidence 3444444 56789999983
No 347
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=40.01 E-value=59 Score=34.42 Aligned_cols=68 Identities=19% Similarity=0.274 Sum_probs=52.0
Q ss_pred EEEEEEe--eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCC
Q 008466 233 IGMTIET--RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDL 306 (564)
Q Consensus 233 ~eitiEt--rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GL 306 (564)
.++++-- .|..-+...|+.|.++|+++|..+++..+++--. -.+.+.+.++.|++.|+++.+|.=+.+
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~~------~~~~~~ell~~Anklg~~vivDvnPsi 73 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFTSLLIPEEDAEL------YFHRFKELLKEANKLGLRVIVDVNPSI 73 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceeeecccCCchHHH------HHHHHHHHHHHHHhcCcEEEEEcCHHH
Confidence 4566664 3333567889999999999999999999887432 134567788889999999999987764
No 348
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=39.69 E-value=3.5e+02 Score=28.00 Aligned_cols=83 Identities=19% Similarity=0.241 Sum_probs=45.4
Q ss_pred HHHHHcCCCeEEEccCCCCHHHHH-----hcCC-----CCCHH----HHHHHHHHHHHc---CCcEEEEEecCC---CCC
Q 008466 250 RQMLSYGCTRLEIGVQSTYEDVAR-----DTNR-----GHTVA----AVADCFCLAKDA---GFKVVAHMMPDL---PNV 309 (564)
Q Consensus 250 ~~L~~~G~~rvsiGvQS~~d~vL~-----~i~R-----ght~~----~~~~ai~~lr~~---G~~v~~~lI~GL---Pge 309 (564)
+.+.++|++-|+|..-..+ .+. ..|+ |-+.+ -+.+.++.++++ ++.+.+.+=.+- .|.
T Consensus 148 ~~a~~aGfDgveih~~~gy--L~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~ 225 (327)
T cd02803 148 RRAKEAGFDGVEIHGAHGY--LLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGL 225 (327)
T ss_pred HHHHHcCCCEEEEcchhhh--HHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCC
Confidence 3556689998888763221 111 1122 22332 224455555543 555665554331 245
Q ss_pred CHHHHHHHHHHHhcCCCCCCCeEEEeee
Q 008466 310 GVERDLESFREFFESPLFRADGLKIYPT 337 (564)
Q Consensus 310 t~e~~~~t~~~~~~~~~l~pd~i~iy~l 337 (564)
+.++..+.++.+. +.++|.|.+..-
T Consensus 226 ~~~e~~~la~~l~---~~G~d~i~vs~g 250 (327)
T cd02803 226 TLEEAIEIAKALE---EAGVDALHVSGG 250 (327)
T ss_pred CHHHHHHHHHHHH---HcCCCEEEeCCC
Confidence 7777777777765 567899887653
No 349
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=39.66 E-value=55 Score=37.14 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCCeEEEccCCCCH------HHH--HhcCCC-CCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHH
Q 008466 247 PHLRQMLSYGCTRLEIGVQSTYE------DVA--RDTNRG-HTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVE 312 (564)
Q Consensus 247 e~L~~L~~~G~~rvsiGvQS~~d------~vL--~~i~Rg-ht~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e 312 (564)
+.|+.|+++|++.|.|.+=..++ ++. ..++.. -|.+++.+.++.+++.|++|.+|+.+.-=+....
T Consensus 37 ~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~s~~~~ 111 (551)
T PRK10933 37 QRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHTSTQHA 111 (551)
T ss_pred HhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCccCchh
Confidence 67899999999999987622111 111 123322 3779999999999999999999999886555433
No 350
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=39.65 E-value=66 Score=34.36 Aligned_cols=57 Identities=19% Similarity=0.129 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEE
Q 008466 244 CLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHM 302 (564)
Q Consensus 244 i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~l 302 (564)
.-++.++.|+++|+|.|.||. ++=..++--.-..+.+.+.+.++.+++.|++|+..+
T Consensus 11 ~~~~d~~~m~~~G~n~vri~~--~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~ 67 (374)
T PF02449_consen 11 EWEEDLRLMKEAGFNTVRIGE--FSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGT 67 (374)
T ss_dssp HHHHHHHHHHHHT-SEEEE-C--CEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEE--echhhccCCCCeeecHHHHHHHHHHHhccCeEEEEe
Confidence 446899999999999999985 233444433333577889999999999999977544
No 351
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=39.43 E-value=3e+02 Score=29.20 Aligned_cols=86 Identities=16% Similarity=0.261 Sum_probs=60.0
Q ss_pred EEEEEeeCCCCCHHHHHHHHHcCCCeEEEcc-CCCCHHHHHhcC---------CC-CCHHHHHHHHHHHHHcCCc---EE
Q 008466 234 GMTIETRPDYCLGPHLRQMLSYGCTRLEIGV-QSTYEDVARDTN---------RG-HTVAAVADCFCLAKDAGFK---VV 299 (564)
Q Consensus 234 eitiEtrPd~i~~e~L~~L~~~G~~rvsiGv-QS~~d~vL~~i~---------Rg-ht~~~~~~ai~~lr~~G~~---v~ 299 (564)
++.+-+.| ++.+.++.+.++|+..+-||= +-.|-..|+.+. +| .|.+++.+|++.+++.|-+ +.
T Consensus 89 Gi~~~stp--fd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~ 166 (329)
T TIGR03569 89 GIEFLSTP--FDLESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNIT 166 (329)
T ss_pred CCcEEEEe--CCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEE
Confidence 56666667 678899999999999998885 344556666543 23 4789999999999998864 43
Q ss_pred -EEEecCCCCCCHHHHHHHHHHH
Q 008466 300 -AHMMPDLPNVGVERDLESFREF 321 (564)
Q Consensus 300 -~~lI~GLPget~e~~~~t~~~~ 321 (564)
.|=..+.|....+-.+..+..+
T Consensus 167 llhC~s~YP~~~~~~nL~~I~~L 189 (329)
T TIGR03569 167 LLHCTTEYPAPFEDVNLNAMDTL 189 (329)
T ss_pred EEEECCCCCCCcccCCHHHHHHH
Confidence 4666677765544444444443
No 352
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=39.03 E-value=3.8e+02 Score=27.54 Aligned_cols=109 Identities=13% Similarity=0.117 Sum_probs=71.0
Q ss_pred HHHHHHHHH-cCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcC
Q 008466 246 GPHLRQMLS-YGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFES 324 (564)
Q Consensus 246 ~e~L~~L~~-~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~ 324 (564)
..+++.+.+ .|++-|-++-=|+--.. -|.++..+.++.+.+. ..-..-+|.|.-..+.++..+..+.+.
T Consensus 27 ~~li~~l~~~~Gv~gi~v~GstGE~~~-------Ls~eEr~~~~~~~~~~-~~~~~~viagvg~~~t~~ai~~a~~a~-- 96 (293)
T PRK04147 27 RRLVRFNIEKQGIDGLYVGGSTGEAFL-------LSTEEKKQVLEIVAEE-AKGKVKLIAQVGSVNTAEAQELAKYAT-- 96 (293)
T ss_pred HHHHHHHHhcCCCCEEEECCCcccccc-------CCHHHHHHHHHHHHHH-hCCCCCEEecCCCCCHHHHHHHHHHHH--
Confidence 467788888 99999887763332111 2456666666666654 111245788887677777788887775
Q ss_pred CCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEe
Q 008466 325 PLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVY 380 (564)
Q Consensus 325 ~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~ 380 (564)
+.+.|.+.+.| |. |.++++++..+.+..+.+..+--+-+|
T Consensus 97 -~~Gad~v~v~~-------P~--------y~~~~~~~l~~~f~~va~a~~lPv~iY 136 (293)
T PRK04147 97 -ELGYDAISAVT-------PF--------YYPFSFEEICDYYREIIDSADNPMIVY 136 (293)
T ss_pred -HcCCCEEEEeC-------Cc--------CCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 57899988764 32 234577888888877777655445555
No 353
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=38.95 E-value=4.3e+02 Score=26.80 Aligned_cols=109 Identities=11% Similarity=0.004 Sum_probs=72.9
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCC
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESP 325 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~ 325 (564)
.++++.|.+.|++-|-++=-++ +-. ..|.++..+.++.+.+.- .-..-+|.|.-+.+.++.++.++.+.
T Consensus 24 ~~~i~~l~~~Gv~gl~v~GstG-E~~------~lt~~Er~~l~~~~~~~~-~~~~~vi~gv~~~~~~~~~~~a~~a~--- 92 (284)
T cd00950 24 ERLIEFQIENGTDGLVVCGTTG-ESP------TLSDEEHEAVIEAVVEAV-NGRVPVIAGTGSNNTAEAIELTKRAE--- 92 (284)
T ss_pred HHHHHHHHHcCCCEEEECCCCc-chh------hCCHHHHHHHHHHHHHHh-CCCCcEEeccCCccHHHHHHHHHHHH---
Confidence 4677788888999998874332 111 246777777777777651 21245788987778888888888776
Q ss_pred CCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEe
Q 008466 326 LFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVY 380 (564)
Q Consensus 326 ~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~ 380 (564)
++++|.+-+.|-. |-++++++.++.+..+.+..+--+-+|
T Consensus 93 ~~G~d~v~~~~P~---------------~~~~~~~~l~~~~~~ia~~~~~pi~lY 132 (284)
T cd00950 93 KAGADAALVVTPY---------------YNKPSQEGLYAHFKAIAEATDLPVILY 132 (284)
T ss_pred HcCCCEEEEcccc---------------cCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 5789988776421 223567888888887777644334454
No 354
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=38.88 E-value=4.1e+02 Score=27.50 Aligned_cols=77 Identities=10% Similarity=-0.026 Sum_probs=53.4
Q ss_pred EEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHH
Q 008466 233 IGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVE 312 (564)
Q Consensus 233 ~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e 312 (564)
..+.+|+. +.+.+....++|++.|-+= +.+.+++.++++.++..+-.+..-.-= |-|++
T Consensus 189 ~kIeVEv~----tleea~ea~~~GaDiI~lD--------------n~~~e~l~~~v~~l~~~~~~~~leasG---GI~~~ 247 (277)
T TIGR01334 189 RKITVEAD----TIEQALTVLQASPDILQLD--------------KFTPQQLHHLHERLKFFDHIPTLAAAG---GINPE 247 (277)
T ss_pred CCEEEECC----CHHHHHHHHHcCcCEEEEC--------------CCCHHHHHHHHHHHhccCCCEEEEEEC---CCCHH
Confidence 34677765 6788999999999999885 689999999999997544444333333 44555
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEeee
Q 008466 313 RDLESFREFFESPLFRADGLKIYPT 337 (564)
Q Consensus 313 ~~~~t~~~~~~~~~l~pd~i~iy~l 337 (564)
. +..+. ..++|.|++-.+
T Consensus 248 n----i~~ya---~~GvD~is~gal 265 (277)
T TIGR01334 248 N----IADYI---EAGIDLFITSAP 265 (277)
T ss_pred H----HHHHH---hcCCCEEEeCcc
Confidence 3 34443 567898877544
No 355
>PRK12999 pyruvate carboxylase; Reviewed
Probab=38.81 E-value=8.8e+02 Score=30.35 Aligned_cols=102 Identities=16% Similarity=0.118 Sum_probs=67.5
Q ss_pred CCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCc--EEEEEe---c--CCCCCCHHH
Q 008466 241 PDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFK--VVAHMM---P--DLPNVGVER 313 (564)
Q Consensus 241 Pd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~--v~~~lI---~--GLPget~e~ 313 (564)
||.+..+.++...+.|++.+.|.. +.|+ ++.+..+++.++++|.. +.+... . .-|--|.+-
T Consensus 625 p~~v~~~~i~~a~~~Gid~~rifd-~lnd-----------~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~ 692 (1146)
T PRK12999 625 PDNVVRAFVREAAAAGIDVFRIFD-SLNW-----------VENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDY 692 (1146)
T ss_pred CchHHHHHHHHHHHcCCCEEEEec-cCCh-----------HHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHH
Confidence 888889999999999999888863 5444 45577888888998864 333333 1 122247777
Q ss_pred HHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhC
Q 008466 314 DLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMV 373 (564)
Q Consensus 314 ~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~l 373 (564)
+.+.++.+. +.+.+.|.|- .| .|. +++.+..+++..+++.+
T Consensus 693 ~~~~a~~l~---~~Ga~~i~ik------Dt-------~G~---l~P~~~~~lv~~lk~~~ 733 (1146)
T PRK12999 693 YVDLAKELE---KAGAHILAIK------DM-------AGL---LKPAAAYELVSALKEEV 733 (1146)
T ss_pred HHHHHHHHH---HcCCCEEEEC------Cc-------cCC---CCHHHHHHHHHHHHHHc
Confidence 777777776 4677766542 22 122 45666666666666654
No 356
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=37.86 E-value=3.6e+02 Score=26.68 Aligned_cols=105 Identities=19% Similarity=0.186 Sum_probs=65.4
Q ss_pred EEeeCCCeEEEEEEeecCCCeEEEEEEEEecCCCCC-----cccc-CC----ccceeeeeeeecccccccCCCchhhhhc
Q 008466 443 DYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVT-----CPEL-MG----KCSIVRELHVYGTAVPVHGREADKLQHQ 512 (564)
Q Consensus 443 ~y~a~gg~e~fls~~d~~~~~lvG~lrlr~~~~~~~-----~~el-~~----~~~~~relhvyg~~~~v~~~~~~~~q~~ 512 (564)
.|... .+-|.++.- .++.++|..||- |...|+ .+.| .+ .++=|=|+--| +|.- ........+.
T Consensus 46 qyD~~-~t~Yll~~~--~~g~I~G~~RlL-ptt~P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF--~vd~-~~a~~~~g~~ 118 (209)
T COG3916 46 QYDNL-DTVYLLALT--SDGRIVGCVRLL-PTTGPYMLTDVFPALLEGGPPPSSPGVWESSRF--AVDK-PSARRAAGGV 118 (209)
T ss_pred ccCCC-CceEEEEEc--CCCcEEEEEEec-cCCCcchhhhhhHHHhcCCCCCCCCCeEEEeee--eecc-ccchhhcCCc
Confidence 34433 367778873 457889999996 332331 1111 11 12234455555 2222 1111112222
Q ss_pred C-HHHHHHHHHHHHHHhcCCCcEEEEecCCCcHHHHhhCCCeee
Q 008466 513 G-YGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELE 555 (564)
Q Consensus 513 G-iG~~Lm~~aE~~A~~~~g~~~i~~~s~~~a~~fY~klGy~~~ 555 (564)
. ++..||...-++|+. .|+++|...+...-....++.||..+
T Consensus 119 ~~a~~el~~g~ie~a~~-~G~~~IvtVt~~~meril~r~Gw~~~ 161 (209)
T COG3916 119 SPAAYELFAGMIEYALA-RGITGIVTVTDTGMERILRRAGWPLT 161 (209)
T ss_pred cHHHHHHHHHHHHHHHH-cCCceEEEEEchHHHHHHHHcCCCeE
Confidence 3 588999999999999 59999988888888999999999764
No 357
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=37.85 E-value=4.7e+02 Score=26.90 Aligned_cols=102 Identities=15% Similarity=0.141 Sum_probs=64.7
Q ss_pred HHHHHHHHHcC-CCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcC
Q 008466 246 GPHLRQMLSYG-CTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFES 324 (564)
Q Consensus 246 ~e~L~~L~~~G-~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~ 324 (564)
..+++.+.+.| ++-|.++=-|+---. .|.++-.+.++.+.+. .+-.+.+|+|.-..+.++..+..+...
T Consensus 24 ~~~i~~~i~~G~v~gi~~~GstGE~~~-------Lt~eEr~~~~~~~~~~-~~~~~pvi~gv~~~~t~~~i~la~~a~-- 93 (290)
T TIGR00683 24 RQIIRHNIDKMKVDGLYVGGSTGENFM-------LSTEEKKEIFRIAKDE-AKDQIALIAQVGSVNLKEAVELGKYAT-- 93 (290)
T ss_pred HHHHHHHHhCCCcCEEEECCccccccc-------CCHHHHHHHHHHHHHH-hCCCCcEEEecCCCCHHHHHHHHHHHH--
Confidence 45666677789 999988854442222 2455555556555553 111245778876667777777777765
Q ss_pred CCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhC
Q 008466 325 PLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMV 373 (564)
Q Consensus 325 ~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~l 373 (564)
+++.|.+-+.|-. |.++++++.++-+..+.+..
T Consensus 94 -~~Gad~v~v~~P~---------------y~~~~~~~i~~yf~~v~~~~ 126 (290)
T TIGR00683 94 -ELGYDCLSAVTPF---------------YYKFSFPEIKHYYDTIIAET 126 (290)
T ss_pred -HhCCCEEEEeCCc---------------CCCCCHHHHHHHHHHHHhhC
Confidence 5789998876422 23457788888877776654
No 358
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=37.72 E-value=1.7e+02 Score=28.04 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=44.1
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc-CCcEEEEEecCCCCCCHHHHHHHHHHHhc
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA-GFKVVAHMMPDLPNVGVERDLESFREFFE 323 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~-G~~v~~~lI~GLPget~e~~~~t~~~~~~ 323 (564)
..+.++.+.++|+++|++++.++.--- |-. ...+.++.+++. ..++.+|+|.-= .+++ ++.+.
T Consensus 13 ~~~~~~~~~~~g~d~i~~~~~Dg~~~~----~~~----~~~~~v~~i~~~~~~~v~v~lm~~~----~~~~---~~~~~- 76 (210)
T TIGR01163 13 LGEEVKAVEEAGADWIHVDVMDGHFVP----NLT----FGPPVLEALRKYTDLPIDVHLMVEN----PDRY---IEDFA- 76 (210)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCC----Ccc----cCHHHHHHHHhcCCCcEEEEeeeCC----HHHH---HHHHH-
Confidence 357888999999999999853322100 111 233444445443 455668888762 3333 33333
Q ss_pred CCCCCCCeEEEeee
Q 008466 324 SPLFRADGLKIYPT 337 (564)
Q Consensus 324 ~~~l~pd~i~iy~l 337 (564)
..++|.+.+|..
T Consensus 77 --~~gadgv~vh~~ 88 (210)
T TIGR01163 77 --EAGADIITVHPE 88 (210)
T ss_pred --HcCCCEEEEccC
Confidence 467899888764
No 359
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=36.74 E-value=1.1e+02 Score=31.85 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.5
Q ss_pred hhhcCHHHHHHHHHHHHHHhcCC
Q 008466 509 LQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 509 ~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
||.+|+|+.|++..=..++.+ |
T Consensus 167 yQrkGyG~~LI~fSYeLSr~E-g 188 (290)
T PLN03238 167 YQRKGYGKFLISFAYELSKRE-G 188 (290)
T ss_pred hhhccHhHhHHHHHhHHhhcc-C
Confidence 999999999999999999886 5
No 360
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=36.61 E-value=2.1e+02 Score=29.22 Aligned_cols=83 Identities=23% Similarity=0.242 Sum_probs=54.6
Q ss_pred HHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc-CCcEEEEEecCCCCCCHHHHHHHHHHHhcCC
Q 008466 247 PHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA-GFKVVAHMMPDLPNVGVERDLESFREFFESP 325 (564)
Q Consensus 247 e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~-G~~v~~~lI~GLPget~e~~~~t~~~~~~~~ 325 (564)
+.++.+.++|++.|+|++-+-+....+.+ .++.+.+.+.++.+++. ++.+.+-+-. +.+.++..+.++.+.
T Consensus 115 ~~a~~~~~~G~d~ielN~~cP~~~~~~~~--~~~~~~~~eiv~~vr~~~~~pv~vKl~~---~~~~~~~~~~a~~l~--- 186 (289)
T cd02810 115 ELARKIERAGAKALELNLSCPNVGGGRQL--GQDPEAVANLLKAVKAAVDIPLLVKLSP---YFDLEDIVELAKAAE--- 186 (289)
T ss_pred HHHHHHHHhCCCEEEEEcCCCCCCCCccc--ccCHHHHHHHHHHHHHccCCCEEEEeCC---CCCHHHHHHHHHHHH---
Confidence 45677778899999999876653221111 24566777777777775 5666655543 345666666776665
Q ss_pred CCCCCeEEEeee
Q 008466 326 LFRADGLKIYPT 337 (564)
Q Consensus 326 ~l~pd~i~iy~l 337 (564)
+.+.|.|.++..
T Consensus 187 ~~Gad~i~~~~~ 198 (289)
T cd02810 187 RAGADGLTAINT 198 (289)
T ss_pred HcCCCEEEEEcc
Confidence 467899988754
No 361
>PRK07328 histidinol-phosphatase; Provisional
Probab=36.45 E-value=3.1e+02 Score=27.72 Aligned_cols=47 Identities=17% Similarity=0.257 Sum_probs=37.2
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEE
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA 300 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~ 300 (564)
+.+.++..+++|+. |.+|-.+-..+-+- + .+.++.+.++++||+-..
T Consensus 210 ~~~il~~~~~~g~~-itigSDAH~~~~vg---~-----~~~~a~~~l~~~G~~~~~ 256 (269)
T PRK07328 210 SPALLRACRERGIP-VVLGSDAHRPEEVG---F-----GFAEALALLKEVGYTETV 256 (269)
T ss_pred CHHHHHHHHHcCCC-EEEeCCCCCHHHHh---c-----cHHHHHHHHHHcCCcEEE
Confidence 57899999999996 99998887766652 2 456789999999998443
No 362
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=36.33 E-value=1.6e+02 Score=31.64 Aligned_cols=78 Identities=12% Similarity=-0.068 Sum_probs=44.2
Q ss_pred CHHHHHHHHHcCCC--eEEEccCCCCHHHHHhcCCCC------CHHHHHHHHHHHHHcCCcEEEEEe--cCCC-------
Q 008466 245 LGPHLRQMLSYGCT--RLEIGVQSTYEDVARDTNRGH------TVAAVADCFCLAKDAGFKVVAHMM--PDLP------- 307 (564)
Q Consensus 245 ~~e~L~~L~~~G~~--rvsiGvQS~~d~vL~~i~Rgh------t~~~~~~ai~~lr~~G~~v~~~lI--~GLP------- 307 (564)
+.+++..|+++|+. .|..+++....++-..+..+. +.+++...-+.+++.|..+.+++. .|..
T Consensus 85 s~~Ea~~lr~aGi~~~~I~~l~~~~~~el~~~v~~~~~~i~V~s~~~l~~L~~~A~~~g~~~~V~LrVdtg~~ri~~g~~ 164 (382)
T cd06811 85 DFKEARALHEAGLPLGHVGHLVQIPRHQVPAVLAMRPEVITVYSLEKAREISDAAVELGRVQDVLLRVYGDEDTLYPGQE 164 (382)
T ss_pred cHHHHHHHHHcCCCHHhEEEccCCCHHHHHHHHHcCCCEEEECCHHHHHHHHHHHHHcCCceEEEEEEECCCCccccCcc
Confidence 56677888888886 555555664445544455442 345555444566667766555544 3433
Q ss_pred -CCCHHHHHHHHHHHh
Q 008466 308 -NVGVERDLESFREFF 322 (564)
Q Consensus 308 -get~e~~~~t~~~~~ 322 (564)
|-+++++.+.++.+.
T Consensus 165 ~G~~~~e~~~~~~~i~ 180 (382)
T cd06811 165 GGFPLEELPAVLAAIK 180 (382)
T ss_pred ceecHHHHHHHHHHHH
Confidence 444555555555554
No 363
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=35.63 E-value=72 Score=34.21 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=36.4
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEe
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMM 303 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI 303 (564)
+.+.|+.|+++|+++|...++...++. ....+.+.+.++.+++.|+++.+|+=
T Consensus 16 ~~~yi~~a~~~Gf~~iFTSL~ipe~~~------~~~~~~~~~l~~~a~~~~~~v~~Dis 68 (357)
T PF05913_consen 16 NKAYIEKAAKYGFKRIFTSLHIPEDDP------EDYLERLKELLKLAKELGMEVIADIS 68 (357)
T ss_dssp HHHHHHHHHCTTEEEEEEEE---------------HHHHHHHHHHHHHHCT-EEEEEE-
T ss_pred HHHHHHHHHHCCCCEEECCCCcCCCCH------HHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 467789999999999999999876533 22346788889999999999999884
No 364
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=35.49 E-value=61 Score=37.28 Aligned_cols=58 Identities=16% Similarity=0.076 Sum_probs=41.8
Q ss_pred HHHHHHHcCCCeEEEcc-CCCC-------HH-HHHhcC-CCCCHHHHHHHHHHHHHcCCcEEEEEecC
Q 008466 248 HLRQMLSYGCTRLEIGV-QSTY-------ED-VARDTN-RGHTVAAVADCFCLAKDAGFKVVAHMMPD 305 (564)
Q Consensus 248 ~L~~L~~~G~~rvsiGv-QS~~-------d~-vL~~i~-Rght~~~~~~ai~~lr~~G~~v~~~lI~G 305 (564)
.|+.|+++|+|.|.|-+ .... +- -.-.++ +--|.+++.+.++.+++.||+|++|+.++
T Consensus 162 l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~N 229 (613)
T TIGR01515 162 LIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPG 229 (613)
T ss_pred HHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 35999999999999965 2111 10 111223 33468899999999999999999998765
No 365
>PLN03239 histone acetyltransferase; Provisional
Probab=35.21 E-value=65 Score=34.28 Aligned_cols=56 Identities=23% Similarity=0.259 Sum_probs=35.9
Q ss_pred EEeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 455 SYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 455 s~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
...|...-.+|||..=.+.+.. + -.|- =+.+... ||.+|+|+.|++..=..++.+ |
T Consensus 191 ~e~D~~g~h~vGYFSKEK~s~~-------~-----~NLa----CIltLPp----yQrkGyG~lLI~fSYeLSr~E-g 246 (351)
T PLN03239 191 CEVDERGFHPVGYYSKEKYSDV-------G-----YNLA----CILTFPA----HQRKGYGRFLIAFSYELSKKE-E 246 (351)
T ss_pred EEecCCceEEEEEeeecccCCC-------C-----CceE----EEEecCh----hhhcchhhhhHhhhhHhhhhc-C
Confidence 3444445578999876544310 0 0110 1224554 999999999999999999886 5
No 366
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.21 E-value=3.6e+02 Score=28.08 Aligned_cols=76 Identities=14% Similarity=0.189 Sum_probs=51.6
Q ss_pred EEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHH
Q 008466 234 GMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVER 313 (564)
Q Consensus 234 eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~ 313 (564)
.+.+|++ +.+++....++|++.|-++ ..+.+++.++++.+++..-++..--+=|+ |.+.
T Consensus 198 ~I~VEv~----tleea~eA~~~GaD~I~LD--------------n~~~e~l~~av~~~~~~~~~i~leAsGGI---t~~n 256 (288)
T PRK07428 198 TIEVETE----TLEQVQEALEYGADIIMLD--------------NMPVDLMQQAVQLIRQQNPRVKIEASGNI---TLET 256 (288)
T ss_pred EEEEECC----CHHHHHHHHHcCCCEEEEC--------------CCCHHHHHHHHHHHHhcCCCeEEEEECCC---CHHH
Confidence 3555543 5678888889999999998 66788999999988765434444444444 5553
Q ss_pred HHHHHHHHhcCCCCCCCeEEEeee
Q 008466 314 DLESFREFFESPLFRADGLKIYPT 337 (564)
Q Consensus 314 ~~~t~~~~~~~~~l~pd~i~iy~l 337 (564)
+..+. +.++|.|++-.+
T Consensus 257 ----i~~ya---~tGvD~Isvgsl 273 (288)
T PRK07428 257 ----IRAVA---ETGVDYISSSAP 273 (288)
T ss_pred ----HHHHH---HcCCCEEEEchh
Confidence 33443 467899887643
No 367
>PRK09505 malS alpha-amylase; Reviewed
Probab=35.18 E-value=81 Score=36.86 Aligned_cols=63 Identities=13% Similarity=0.081 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCCeEEEcc--CCCC--------------------HHHHHhcCCC-CCHHHHHHHHHHHHHcCCcEEEEE
Q 008466 246 GPHLRQMLSYGCTRLEIGV--QSTY--------------------EDVARDTNRG-HTVAAVADCFCLAKDAGFKVVAHM 302 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGv--QS~~--------------------d~vL~~i~Rg-ht~~~~~~ai~~lr~~G~~v~~~l 302 (564)
.++|+.|+++|++.|-|.+ ++.. ..-...++.. -|.+++.+.++.+++.||+|++|+
T Consensus 233 ~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~ 312 (683)
T PRK09505 233 TEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDV 312 (683)
T ss_pred HHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5789999999999999875 2211 0111233332 378999999999999999999999
Q ss_pred ecCCCC
Q 008466 303 MPDLPN 308 (564)
Q Consensus 303 I~GLPg 308 (564)
.++-.+
T Consensus 313 V~NH~~ 318 (683)
T PRK09505 313 VMNHTG 318 (683)
T ss_pred CcCCCc
Confidence 998776
No 368
>PLN02784 alpha-amylase
Probab=34.39 E-value=90 Score=37.30 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCCeEEEccC--CCCH-----HHHHhcCC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCC
Q 008466 246 GPHLRQMLSYGCTRLEIGVQ--STYE-----DVARDTNR-GHTVAAVADCFCLAKDAGFKVVAHMMPDLP 307 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQ--S~~d-----~vL~~i~R-ght~~~~~~ai~~lr~~G~~v~~~lI~GLP 307 (564)
.+.++.|+++|++.|-|.+= |.++ .-+-.++- --|.+++.+.++.+++.|+++.+|+.++--
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ 593 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHR 593 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECcccc
Confidence 57899999999999998872 2211 11233443 348899999999999999999998877653
No 369
>PRK05402 glycogen branching enzyme; Provisional
Probab=34.32 E-value=65 Score=37.88 Aligned_cols=58 Identities=16% Similarity=0.139 Sum_probs=42.6
Q ss_pred HHHHHHHcCCCeEEEccCCC--CH-----H--HHHhcC-CCCCHHHHHHHHHHHHHcCCcEEEEEecC
Q 008466 248 HLRQMLSYGCTRLEIGVQST--YE-----D--VARDTN-RGHTVAAVADCFCLAKDAGFKVVAHMMPD 305 (564)
Q Consensus 248 ~L~~L~~~G~~rvsiGvQS~--~d-----~--vL~~i~-Rght~~~~~~ai~~lr~~G~~v~~~lI~G 305 (564)
.|+.|+++|+|.|.|-+=.- .+ + -.-.+. +--|.+++.+.++.+++.||+|++|+.++
T Consensus 271 l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~N 338 (726)
T PRK05402 271 LIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPA 338 (726)
T ss_pred HHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 35899999999999987321 11 0 111233 33478999999999999999999998776
No 370
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=34.26 E-value=71 Score=37.34 Aligned_cols=58 Identities=16% Similarity=0.128 Sum_probs=42.4
Q ss_pred HHHHHHHcCCCeEEEccC--CCCHH--------------H--HHhcCCC----CCHHHHHHHHHHHHHcCCcEEEEEecC
Q 008466 248 HLRQMLSYGCTRLEIGVQ--STYED--------------V--ARDTNRG----HTVAAVADCFCLAKDAGFKVVAHMMPD 305 (564)
Q Consensus 248 ~L~~L~~~G~~rvsiGvQ--S~~d~--------------v--L~~i~Rg----ht~~~~~~ai~~lr~~G~~v~~~lI~G 305 (564)
.|+.|+++|+|.|.|-+= +.++. + .-.+... -+.+++.+.++.+++.||+|++|+.++
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~N 268 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYN 268 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 599999999999999872 22211 0 1112221 267899999999999999999998874
No 371
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=34.20 E-value=3.2e+02 Score=25.91 Aligned_cols=79 Identities=10% Similarity=-0.104 Sum_probs=39.9
Q ss_pred CHHHHHHHHHcCC--CeEEEccCCCCHHH-HHhcCC-C-----CCHHHHHHHHHHHHHcCCcEEEEEecCCC------CC
Q 008466 245 LGPHLRQMLSYGC--TRLEIGVQSTYEDV-ARDTNR-G-----HTVAAVADCFCLAKDAGFKVVAHMMPDLP------NV 309 (564)
Q Consensus 245 ~~e~L~~L~~~G~--~rvsiGvQS~~d~v-L~~i~R-g-----ht~~~~~~ai~~lr~~G~~v~~~lI~GLP------ge 309 (564)
+.+++..++++|+ .+|.+.-+..+++- ...+.. . .+.+++....+.+++.|.+..+++.+... |-
T Consensus 45 s~~E~~~~~~~g~~~~~I~~~~~~~~~~~l~~~~~~~~~~~~ids~~~l~~l~~~~~~~~~~~~v~lrv~~g~~~~R~G~ 124 (211)
T cd06808 45 SLGEALLLRAAGIPPEPILFLGPCKQVSELEDAAEQGVIVVTVDSLEELEKLEEAALKAGPPARVLLRIDTGDENGKFGV 124 (211)
T ss_pred CHHHHHHHHHcCCCHHHEEEcCCCCCHHHHHHHHHcCCCEEEeCCHHHHHHHHHHHHHhCCCceEEEEEcCCCCCCCCCC
Confidence 3455666666665 45555554443232 223332 1 13445544444555556555555555443 55
Q ss_pred CHHHHHHHHHHHhc
Q 008466 310 GVERDLESFREFFE 323 (564)
Q Consensus 310 t~e~~~~t~~~~~~ 323 (564)
+.+++.+.++.+.+
T Consensus 125 ~~~e~~~~~~~i~~ 138 (211)
T cd06808 125 RPEELKALLERAKE 138 (211)
T ss_pred CHHHHHHHHHHHHh
Confidence 66666666666543
No 372
>PRK12313 glycogen branching enzyme; Provisional
Probab=33.62 E-value=64 Score=37.26 Aligned_cols=59 Identities=15% Similarity=0.073 Sum_probs=43.2
Q ss_pred HHHHHHHcCCCeEEEccC--CC------CHH-HHHhcC-CCCCHHHHHHHHHHHHHcCCcEEEEEecCC
Q 008466 248 HLRQMLSYGCTRLEIGVQ--ST------YED-VARDTN-RGHTVAAVADCFCLAKDAGFKVVAHMMPDL 306 (564)
Q Consensus 248 ~L~~L~~~G~~rvsiGvQ--S~------~d~-vL~~i~-Rght~~~~~~ai~~lr~~G~~v~~~lI~GL 306 (564)
.|+.|+++|+|.|.|-+= +. ++- -.-.+. +--|.+++.+.++.+++.||+|+.|+.++-
T Consensus 176 ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH 244 (633)
T PRK12313 176 LIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVPGH 244 (633)
T ss_pred HHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 469999999999998762 11 111 122333 334789999999999999999999987753
No 373
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=33.56 E-value=8e+02 Score=28.31 Aligned_cols=107 Identities=11% Similarity=0.095 Sum_probs=76.3
Q ss_pred EEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEE-ecCCCCCCHHHHH
Q 008466 237 IETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHM-MPDLPNVGVERDL 315 (564)
Q Consensus 237 iEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~l-I~GLPget~e~~~ 315 (564)
...-||.+-+..++...+.|++.+-+.- +. ..++....+++.++++|..+..-+ ..+-|--|.+.+.
T Consensus 90 y~~~~d~vv~~~v~~a~~~Gidv~Rifd-~l-----------nd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~ 157 (596)
T PRK14042 90 YRNYADDVVRAFVKLAVNNGVDVFRVFD-AL-----------NDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFL 157 (596)
T ss_pred cccCChHHHHHHHHHHHHcCCCEEEEcc-cC-----------cchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHH
Confidence 4557888888999999999998877653 33 245677889999999999765431 2247899999999
Q ss_pred HHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 316 ESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 316 ~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
+.++.+. +.+++.|.|- .| .| .+++.+..+++..+++.++
T Consensus 158 ~~ak~l~---~~Gad~I~Ik------Dt-------aG---~l~P~~v~~lv~alk~~~~ 197 (596)
T PRK14042 158 ELGKKLA---EMGCDSIAIK------DM-------AG---LLTPTVTVELYAGLKQATG 197 (596)
T ss_pred HHHHHHH---HcCCCEEEeC------Cc-------cc---CCCHHHHHHHHHHHHhhcC
Confidence 9998887 4677876553 22 12 2456677777776666654
No 374
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=33.53 E-value=4.7e+02 Score=26.80 Aligned_cols=105 Identities=19% Similarity=0.145 Sum_probs=64.8
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc---CCcEEEEEecCCCCCCHHHHHHHHHHHh
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA---GFKVVAHMMPDLPNVGVERDLESFREFF 322 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~---G~~v~~~lI~GLPget~e~~~~t~~~~~ 322 (564)
..+++.+.+.|++.|.++=-|+--. -.|.++..+.++.+.+. .+. +|.|... +.++.++..+.+.
T Consensus 24 ~~l~~~l~~~Gv~gi~v~GstGE~~-------~Ls~eEr~~l~~~~~~~~~~~~p----vi~gv~~-~t~~~i~~a~~a~ 91 (289)
T cd00951 24 RAHVEWLLSYGAAALFAAGGTGEFF-------SLTPDEYAQVVRAAVEETAGRVP----VLAGAGY-GTATAIAYAQAAE 91 (289)
T ss_pred HHHHHHHHHcCCCEEEECcCCcCcc-------cCCHHHHHHHHHHHHHHhCCCCC----EEEecCC-CHHHHHHHHHHHH
Confidence 3466677778999987766444222 13566677777666654 244 4455544 5566677777765
Q ss_pred cCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEe
Q 008466 323 ESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVY 380 (564)
Q Consensus 323 ~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~ 380 (564)
+.+.|.+-+.| |. |..+++++..+.+..+.+..+--+-+|
T Consensus 92 ---~~Gad~v~~~p-------P~--------y~~~~~~~i~~~f~~v~~~~~~pi~lY 131 (289)
T cd00951 92 ---KAGADGILLLP-------PY--------LTEAPQEGLYAHVEAVCKSTDLGVIVY 131 (289)
T ss_pred ---HhCCCEEEECC-------CC--------CCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 57889887643 22 224577888888887777654334444
No 375
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=33.42 E-value=67 Score=40.10 Aligned_cols=60 Identities=15% Similarity=0.125 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCCeEEEccC--CCCHHH----------------HHhcCCCC---CHHHHHHHHHHHHHcCCcEEEEEec
Q 008466 246 GPHLRQMLSYGCTRLEIGVQ--STYEDV----------------ARDTNRGH---TVAAVADCFCLAKDAGFKVVAHMMP 304 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQ--S~~d~v----------------L~~i~Rgh---t~~~~~~ai~~lr~~G~~v~~~lI~ 304 (564)
++.|+.|+++|+|.|.|.+= +.++.- ...+.... +.+++.+.++.++++||+|++|+.+
T Consensus 190 ~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~ 269 (1221)
T PRK14510 190 PEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVF 269 (1221)
T ss_pred chhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 46788999999999999762 222111 11122211 7899999999999999999999887
Q ss_pred C
Q 008466 305 D 305 (564)
Q Consensus 305 G 305 (564)
+
T Consensus 270 N 270 (1221)
T PRK14510 270 N 270 (1221)
T ss_pred c
Confidence 3
No 376
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=33.32 E-value=1.6e+02 Score=32.00 Aligned_cols=61 Identities=21% Similarity=0.172 Sum_probs=34.1
Q ss_pred CCHHHHHHHHH----cCCCeEEEccCCCCHHHHHhcCCC---CCHHHHHHHHHHHHHcCCcEE-EEEecCC
Q 008466 244 CLGPHLRQMLS----YGCTRLEIGVQSTYEDVARDTNRG---HTVAAVADCFCLAKDAGFKVV-AHMMPDL 306 (564)
Q Consensus 244 i~~e~L~~L~~----~G~~rvsiGvQS~~d~vL~~i~Rg---ht~~~~~~ai~~lr~~G~~v~-~~lI~GL 306 (564)
-+.+.|..+++ +|.++-- |||.+..---+++.+ .-.+.+.+.++.+-++|++++ ..||+.+
T Consensus 40 W~~~~i~~~k~~ie~~GL~~~v--vEs~pv~e~Ik~g~~~rd~~Ienyk~~irNla~~GI~vicYNFMPv~ 108 (394)
T TIGR00695 40 WEKEEIRKRKEYIESAGLHWSV--VESVPVHEAIKTGTGNYGRWIENYKQTLRNLAQCGIKTVCYNFMPVL 108 (394)
T ss_pred CCHHHHHHHHHHHHHcCCeEEE--EeCCCccHHHHcCCCcHHHHHHHHHHHHHHHHHcCCCEEEEEecccc
Confidence 35566655554 5643322 577664422222222 234556677777778888854 5788776
No 377
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=33.26 E-value=25 Score=25.86 Aligned_cols=11 Identities=45% Similarity=1.337 Sum_probs=7.7
Q ss_pred CcCCCCCCCCC
Q 008466 126 CVYCPGGPDSD 136 (564)
Q Consensus 126 C~YC~~~~~~~ 136 (564)
|.||++++..+
T Consensus 1 CP~C~~kkk~~ 11 (43)
T PF03470_consen 1 CPFCPGKKKQD 11 (43)
T ss_pred CCCCCCCCCcc
Confidence 78998766543
No 378
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=33.20 E-value=2.3e+02 Score=28.70 Aligned_cols=87 Identities=16% Similarity=0.155 Sum_probs=56.6
Q ss_pred EEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHH-hcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHH
Q 008466 234 GMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVAR-DTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVE 312 (564)
Q Consensus 234 eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~-~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e 312 (564)
.+.+|..|. +|.++...+..-+.+.+-++.-.+-+-+ -++=....+.+.++++.++++|+.|+..+=+.
T Consensus 65 ~lNlE~a~t---~e~~~ia~~~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP~------- 134 (239)
T PF03740_consen 65 PLNLEMAPT---EEMVDIALKVKPDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDPD------- 134 (239)
T ss_dssp EEEEEEESS---HHHHHHHHHH--SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S--------
T ss_pred CEEeccCCC---HHHHHHHHhCCcCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCCC-------
Confidence 588888885 8999999999999999988765443322 11111125788999999999999988776443
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEe
Q 008466 313 RDLESFREFFESPLFRADGLKIY 335 (564)
Q Consensus 313 ~~~~t~~~~~~~~~l~pd~i~iy 335 (564)
.+.++... +++.|.|-+|
T Consensus 135 --~~qi~~A~---~~Gad~VELh 152 (239)
T PF03740_consen 135 --PEQIEAAK---ELGADRVELH 152 (239)
T ss_dssp --HHHHHHHH---HTT-SEEEEE
T ss_pred --HHHHHHHH---HcCCCEEEEe
Confidence 23455554 4678999999
No 379
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=33.14 E-value=72 Score=37.64 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=44.0
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCH---------HHHHhcC-CCCCHHHHHHHHHHHHHcCCcEEEEEecC
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYE---------DVARDTN-RGHTVAAVADCFCLAKDAGFKVVAHMMPD 305 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d---------~vL~~i~-Rght~~~~~~ai~~lr~~G~~v~~~lI~G 305 (564)
++.|..++++|+|.|.|-+=.-.. .-.-.+. |--|.+++.+.++.+++.||.|.+|+.++
T Consensus 254 ~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~n 323 (758)
T PLN02447 254 DDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHS 323 (758)
T ss_pred HHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 567999999999999887622111 0011122 33478999999999999999999998875
No 380
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=32.98 E-value=3e+02 Score=27.86 Aligned_cols=85 Identities=16% Similarity=0.125 Sum_probs=61.0
Q ss_pred EEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCC----CHHHHHHHHHHHHHcCCcEEEEEecCCCCC
Q 008466 234 GMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGH----TVAAVADCFCLAKDAGFKVVAHMMPDLPNV 309 (564)
Q Consensus 234 eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rgh----t~~~~~~ai~~lr~~G~~v~~~lI~GLPge 309 (564)
++.+|..| +++.++...+..-+++.+-++.-.+-+ ..-|. ..+.+.+.++.++++|+.|+..+=+.
T Consensus 64 ~lNlE~a~---~~emi~ia~~vkP~~vtLVPEkr~ElT---TegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP~---- 133 (237)
T TIGR00559 64 PFNIEMAP---TEEMIRIAEEIKPEQVTLVPEARDEVT---TEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDAD---- 133 (237)
T ss_pred CEEeccCC---CHHHHHHHHHcCCCEEEECCCCCCCcc---CCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCCC----
Confidence 67888777 489999999999999999987654443 12232 33678889999999999988765322
Q ss_pred CHHHHHHHHHHHhcCCCCCCCeEEEee
Q 008466 310 GVERDLESFREFFESPLFRADGLKIYP 336 (564)
Q Consensus 310 t~e~~~~t~~~~~~~~~l~pd~i~iy~ 336 (564)
.+.++... +.+.|.|-+|.
T Consensus 134 -----~~qi~~A~---~~GAd~VELhT 152 (237)
T TIGR00559 134 -----KDQISAAA---EVGADRIEIHT 152 (237)
T ss_pred -----HHHHHHHH---HhCcCEEEEec
Confidence 23444444 46789999983
No 381
>PRK03705 glycogen debranching enzyme; Provisional
Probab=32.64 E-value=81 Score=36.68 Aligned_cols=59 Identities=15% Similarity=0.116 Sum_probs=41.7
Q ss_pred HHHHHHHHcCCCeEEEccC--CCCHHHH----------------HhcCCCC------CHHHHHHHHHHHHHcCCcEEEEE
Q 008466 247 PHLRQMLSYGCTRLEIGVQ--STYEDVA----------------RDTNRGH------TVAAVADCFCLAKDAGFKVVAHM 302 (564)
Q Consensus 247 e~L~~L~~~G~~rvsiGvQ--S~~d~vL----------------~~i~Rgh------t~~~~~~ai~~lr~~G~~v~~~l 302 (564)
..|+.|+++|+|.|.|-+= +.++..+ -.+.... +.+++.+.++.+++.||+|++|+
T Consensus 183 ~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 183 VMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred cchHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 3599999999999999762 2221111 1122211 24789999999999999999999
Q ss_pred ecC
Q 008466 303 MPD 305 (564)
Q Consensus 303 I~G 305 (564)
.++
T Consensus 263 V~N 265 (658)
T PRK03705 263 VFN 265 (658)
T ss_pred ccc
Confidence 885
No 382
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=32.56 E-value=6e+02 Score=26.57 Aligned_cols=146 Identities=12% Similarity=0.090 Sum_probs=81.2
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCC----CHHHHHHHHHcCCCeEEE
Q 008466 187 MGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYC----LGPHLRQMLSYGCTRLEI 262 (564)
Q Consensus 187 ~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i----~~e~L~~L~~~G~~rvsi 262 (564)
+||....-.++.+.++++.++++.+ ..+.+|+-+|+.+- ..+.++.+.++|+..|.+
T Consensus 107 g~Gs~Ll~~~~~~~eiv~avr~~~~-------------------~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~V 167 (312)
T PRK10550 107 GGGATLLKDPELIYQGAKAMREAVP-------------------AHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVV 167 (312)
T ss_pred CCchHhhcCHHHHHHHHHHHHHhcC-------------------CCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEE
Confidence 4555555677888888888877653 12457777777542 246667888899999988
Q ss_pred ccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc-CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecC
Q 008466 263 GVQSTYEDVARDTNRGHTVAAVADCFCLAKDA-GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIR 341 (564)
Q Consensus 263 GvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~-G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~ 341 (564)
-.-|.. ..-.+.. .+ .+.++.++++ +++|+. .=--.|.++..+.+ + .-+.|.|.+-.-.+ .
T Consensus 168 h~Rt~~-----~~y~g~~-~~-~~~i~~ik~~~~iPVi~----nGdI~t~~da~~~l----~--~~g~DgVmiGRg~l-~ 229 (312)
T PRK10550 168 HGRTKE-----DGYRAEH-IN-WQAIGEIRQRLTIPVIA----NGEIWDWQSAQQCM----A--ITGCDAVMIGRGAL-N 229 (312)
T ss_pred CCCCCc-----cCCCCCc-cc-HHHHHHHHhhcCCcEEE----eCCcCCHHHHHHHH----h--ccCCCEEEEcHHhH-h
Confidence 654421 1111211 01 2455555553 444332 11224566544433 2 24578887764322 2
Q ss_pred CChhHHHHHcCCCCCCCHHHHHHHHHHHH
Q 008466 342 GTGLYELWKTGRYRNYPPEQLVDIVARIL 370 (564)
Q Consensus 342 GT~L~~~~~~G~~~~~~~ee~~~~~~~~~ 370 (564)
+--+.+.++.|. .+++.++.++++....
T Consensus 230 nP~lf~~~~~g~-~~~~~~e~~~~~~~~~ 257 (312)
T PRK10550 230 IPNLSRVVKYNE-PRMPWPEVVALLQKYT 257 (312)
T ss_pred CcHHHHHhhcCC-CCCCHHHHHHHHHHHH
Confidence 223555566665 4567777766655443
No 383
>PRK08392 hypothetical protein; Provisional
Probab=32.36 E-value=2.3e+02 Score=27.62 Aligned_cols=53 Identities=19% Similarity=0.166 Sum_probs=38.6
Q ss_pred EEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCc
Q 008466 235 MTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFK 297 (564)
Q Consensus 235 itiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~ 297 (564)
+-|.|++..-+.+.++..+++|+ ++.+|=.+-.++-+ ++ +.++.+.++++||+
T Consensus 153 lEiNt~~~~p~~~~l~~~~~~G~-~~~igSDAH~~~~v---g~------~~~a~~~~~~~g~~ 205 (215)
T PRK08392 153 FEISSRYRVPDLEFIRECIKRGI-KLTFASDAHRPEDV---GN------VSWSLKVFKKAGGK 205 (215)
T ss_pred EEEeCCCCCCCHHHHHHHHHcCC-EEEEeCCCCChHHC---Cc------HHHHHHHHHHcCCC
Confidence 33445555667899999999996 69999877655443 21 45688999999986
No 384
>PRK07329 hypothetical protein; Provisional
Probab=32.26 E-value=3.3e+02 Score=27.20 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=36.7
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEE
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVV 299 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~ 299 (564)
.+.++..++.|+..|.+|-.+-..+-+- ..+.++.+++++.||+..
T Consensus 198 ~~~l~~~~~~g~~~i~~gSDAH~~~~vg--------~~~~~a~~~l~~~g~~~~ 243 (246)
T PRK07329 198 RYAIELYKQLGGKLFSIGSDAHKLEHYR--------YNFDDAQKLLKEHGIKEI 243 (246)
T ss_pred HHHHHHHHHcCCeEEEecCCCCCHHHHH--------HHHHHHHHHHHHcCCceE
Confidence 5678999999998899999887766542 256778999999999854
No 385
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=32.15 E-value=96 Score=35.61 Aligned_cols=60 Identities=10% Similarity=0.168 Sum_probs=42.1
Q ss_pred HHHHHHHHcCCCeEEEccCCCCHHH---------------HH--hcCC--C---C----CHHHHHHHHHHHHHcCCcEEE
Q 008466 247 PHLRQMLSYGCTRLEIGVQSTYEDV---------------AR--DTNR--G---H----TVAAVADCFCLAKDAGFKVVA 300 (564)
Q Consensus 247 e~L~~L~~~G~~rvsiGvQS~~d~v---------------L~--~i~R--g---h----t~~~~~~ai~~lr~~G~~v~~ 300 (564)
++|+.|+++|+|.|.|-+=.-...+ .. .+.. + + +.+++.+.++.+++.||+|++
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vil 247 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIM 247 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEE
Confidence 6799999999999998763211110 00 0000 0 0 148999999999999999999
Q ss_pred EEecCC
Q 008466 301 HMMPDL 306 (564)
Q Consensus 301 ~lI~GL 306 (564)
|+.++-
T Consensus 248 DvV~NH 253 (605)
T TIGR02104 248 DVVYNH 253 (605)
T ss_pred EEEcCC
Confidence 998864
No 386
>PRK12568 glycogen branching enzyme; Provisional
Probab=32.06 E-value=92 Score=36.65 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCH----------HHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecC
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYE----------DVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPD 305 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d----------~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~G 305 (564)
++.|..|+++|+|.|+|-+=.-++ .-..--.|--|.+++.+.++.++++||+|++|+.++
T Consensus 273 ~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~n 342 (730)
T PRK12568 273 EQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVSA 342 (730)
T ss_pred HHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 456799999999999887632111 011112244578999999999999999999999876
No 387
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=31.58 E-value=2.5e+02 Score=33.67 Aligned_cols=76 Identities=13% Similarity=0.150 Sum_probs=53.1
Q ss_pred EEEEeeCCCC---CHHHHHHHHHcCCCeEEEcc--CCCCH-------HHHHhcCC-CCCHHHHHHHHHHHHHcCCcEEEE
Q 008466 235 MTIETRPDYC---LGPHLRQMLSYGCTRLEIGV--QSTYE-------DVARDTNR-GHTVAAVADCFCLAKDAGFKVVAH 301 (564)
Q Consensus 235 itiEtrPd~i---~~e~L~~L~~~G~~rvsiGv--QS~~d-------~vL~~i~R-ght~~~~~~ai~~lr~~G~~v~~~ 301 (564)
..+..+|+.- -.++|+.++++|++.|.+.+ ++.+. .-...++. -.+.+++.+.++.+++.|+++..|
T Consensus 5 YRLQ~~~~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlD 84 (825)
T TIGR02401 5 YRLQLRAGFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVD 84 (825)
T ss_pred EEEeeCCCCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4455555522 25788999999999998887 22111 01123333 237899999999999999999999
Q ss_pred EecCCCCCC
Q 008466 302 MMPDLPNVG 310 (564)
Q Consensus 302 lI~GLPget 310 (564)
+.++--+..
T Consensus 85 iVpNH~a~~ 93 (825)
T TIGR02401 85 IVPNHMAVH 93 (825)
T ss_pred ecccccccc
Confidence 998876654
No 388
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=31.11 E-value=3.1e+02 Score=27.62 Aligned_cols=88 Identities=14% Similarity=0.159 Sum_probs=50.5
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc-CCcEEEEE--ecCCCCCC---HHHHHHHH
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA-GFKVVAHM--MPDLPNVG---VERDLESF 318 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~-G~~v~~~l--I~GLPget---~e~~~~t~ 318 (564)
.++.++.++++|++.|++.+--.. .......+.+++.+..+.+.+. |+.+.++- ..++-..+ .+..++.+
T Consensus 12 l~~~l~~a~~~G~d~vEl~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~ 87 (279)
T cd00019 12 LENALKRAKEIGFDTVAMFLGNPR----SWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERL 87 (279)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCC----ccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHH
Confidence 357889999999999988764332 2223334666777777777777 66665542 22332223 22233333
Q ss_pred HHHhcC-CCCCCCeEEEee
Q 008466 319 REFFES-PLFRADGLKIYP 336 (564)
Q Consensus 319 ~~~~~~-~~l~pd~i~iy~ 336 (564)
+..++. ..++.+.+.+++
T Consensus 88 ~~~i~~A~~lG~~~v~~~~ 106 (279)
T cd00019 88 KDEIERCEELGIRLLVFHP 106 (279)
T ss_pred HHHHHHHHHcCCCEEEECC
Confidence 444333 367777766554
No 389
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=30.99 E-value=1.4e+02 Score=30.23 Aligned_cols=97 Identities=12% Similarity=0.205 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEE---EEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHH
Q 008466 194 LPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGM---TIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYED 270 (564)
Q Consensus 194 l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~ei---tiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~ 270 (564)
++..+++.+++..-.... .+.+ |...-|..+-.++++..+++|+ .++.| =|+-+-
T Consensus 9 l~~~~~~d~Le~~g~yID--------------------~lKfg~Gt~~l~~~~~l~eki~la~~~~V-~v~~G-Gtl~E~ 66 (237)
T TIGR03849 9 LPPKFVEDYLKVCGDYIT--------------------FVKFGWGTSALIDRDIVKEKIEMYKDYGI-KVYPG-GTLFEI 66 (237)
T ss_pred CCHHHHHHHHHHhhhhee--------------------eEEecCceEeeccHHHHHHHHHHHHHcCC-eEeCC-ccHHHH
Confidence 577888887776655443 1222 3334665577899999999997 67777 455454
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCCcEE--EEEecCCCCCCHHHHHHHHH
Q 008466 271 VARDTNRGHTVAAVADCFCLAKDAGFKVV--AHMMPDLPNVGVERDLESFR 319 (564)
Q Consensus 271 vL~~i~Rght~~~~~~ai~~lr~~G~~v~--~~lI~GLPget~e~~~~t~~ 319 (564)
.+.+ ..+.+-++.+++.||.++ ++=...+|.++..++.+.+.
T Consensus 67 ~~~q-------~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~ 110 (237)
T TIGR03849 67 AHSK-------GKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAK 110 (237)
T ss_pred HHHh-------hhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHH
Confidence 4432 456677889999999844 35555677655554444443
No 390
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=30.98 E-value=2e+02 Score=28.88 Aligned_cols=87 Identities=10% Similarity=0.046 Sum_probs=52.8
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEec--CCCCCCHHHHH---HHHHH
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMP--DLPNVGVERDL---ESFRE 320 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~--GLPget~e~~~---~t~~~ 320 (564)
.+.++.+.+.|++.|+|-+...... .....+.+++.+.-+.+++.|+++.+|--+ .+-..+++... +.++.
T Consensus 13 ~~~~~~~~~~G~~~vel~~~~~~~~----~~~~~~~~~~~~l~~~~~~~gl~ls~h~p~~~nl~s~d~~~r~~~~~~l~~ 88 (273)
T smart00518 13 YKAFIEAVDIGARSFQLFLGNPRSW----KGVRLSEETAEKFKEALKENNIDVSVHAPYLINLASPDKEKVEKSIERLID 88 (273)
T ss_pred hHHHHHHHHcCCCEEEEECCCCCCC----CCCCCCHHHHHHHHHHHHHcCCCEEEECCceecCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999976554111 122467777777777888899998776432 22222333222 22333
Q ss_pred HhcC-CCCCCCeEEEee
Q 008466 321 FFES-PLFRADGLKIYP 336 (564)
Q Consensus 321 ~~~~-~~l~pd~i~iy~ 336 (564)
.++. ..++.+.|.+++
T Consensus 89 ~i~~A~~lGa~~vv~h~ 105 (273)
T smart00518 89 EIKRCEELGIKALVFHP 105 (273)
T ss_pred HHHHHHHcCCCEEEEcc
Confidence 3322 357788777764
No 391
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=30.55 E-value=5.3e+02 Score=25.56 Aligned_cols=136 Identities=18% Similarity=0.178 Sum_probs=75.5
Q ss_pred ccEEEEEEe--eCCCC-CHHHHHHHHHcCCCeEEEccCCCC---------HHHHHhcCCCCCHHHHHHHHHHHHHcCCcE
Q 008466 231 KCIGMTIET--RPDYC-LGPHLRQMLSYGCTRLEIGVQSTY---------EDVARDTNRGHTVAAVADCFCLAKDAGFKV 298 (564)
Q Consensus 231 ~~~eitiEt--rPd~i-~~e~L~~L~~~G~~rvsiGvQS~~---------d~vL~~i~Rght~~~~~~ai~~lr~~G~~v 298 (564)
++.=+|+-| .||-- +...|+-|..-|.+-|++|+-=.+ -.-...+..|.|...+++.++.++..|..+
T Consensus 17 knaLvtfiTaG~P~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~ 96 (268)
T KOG4175|consen 17 KNALVTFITAGDPDVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGVTC 96 (268)
T ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhcccCccc
Confidence 445567765 67632 456677778889999999984221 122345667899999999999999998763
Q ss_pred EEEEecCCCC----CCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCC------CCCCHHHHHHHHHH
Q 008466 299 VAHMMPDLPN----VGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRY------RNYPPEQLVDIVAR 368 (564)
Q Consensus 299 ~~~lI~GLPg----et~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~------~~~~~ee~~~~~~~ 368 (564)
-.-|| |.-+ -..+..+..++. .+..++-+--+-+.+--.+.+..++..+ .|-+.++-++++..
T Consensus 97 PIiLm-gYYNPIl~yG~e~~iq~ak~------aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~ 169 (268)
T KOG4175|consen 97 PIILM-GYYNPILRYGVENYIQVAKN------AGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTDERMELLVE 169 (268)
T ss_pred ceeee-ecccHHHhhhHHHHHHHHHh------cCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHH
Confidence 33222 1111 122333333322 2333333322222222223333333332 24567788888776
Q ss_pred HHHhC
Q 008466 369 ILAMV 373 (564)
Q Consensus 369 ~~~~l 373 (564)
+-..+
T Consensus 170 ~adsF 174 (268)
T KOG4175|consen 170 AADSF 174 (268)
T ss_pred hhcce
Confidence 66543
No 392
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=30.42 E-value=3.4e+02 Score=27.73 Aligned_cols=86 Identities=9% Similarity=0.132 Sum_probs=45.3
Q ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCC-C-CHHHHHHHHHcCCCe
Q 008466 182 VEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDY-C-LGPHLRQMLSYGCTR 259 (564)
Q Consensus 182 ve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~-i-~~e~L~~L~~~G~~r 259 (564)
+..|...+|.-.+.|....++++.+++.++ +.+.+-++-|. + ....+..+ ++|+++
T Consensus 163 a~~i~l~DT~G~~~P~~v~~lv~~l~~~~~---------------------~~l~~H~Hnd~GlA~aN~laA~-~aGa~~ 220 (275)
T cd07937 163 ADSICIKDMAGLLTPYAAYELVKALKKEVG---------------------LPIHLHTHDTSGLAVATYLAAA-EAGVDI 220 (275)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHhCC---------------------CeEEEEecCCCChHHHHHHHHH-HhCCCE
Confidence 445666667667777777777777766543 22334443331 1 23333333 568887
Q ss_pred EEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCc
Q 008466 260 LEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFK 297 (564)
Q Consensus 260 vsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~ 297 (564)
|.-.+..+ +++..-....+.+..++..|++
T Consensus 221 vd~sv~Gl--------G~~aGN~~~E~l~~~L~~~g~~ 250 (275)
T cd07937 221 VDTAISPL--------SGGTSQPSTESMVAALRGTGRD 250 (275)
T ss_pred EEEecccc--------cCCcCChhHHHHHHHHHccCCC
Confidence 77666543 4433333444444444444554
No 393
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=30.38 E-value=5.2e+02 Score=26.83 Aligned_cols=51 Identities=18% Similarity=0.172 Sum_probs=42.0
Q ss_pred hhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEec---CCCcHHHHhhCCCeeeCce
Q 008466 507 DKLQHQGYGTLLMEEAERIALGEHRSRKMAVIS---GVGTRHYYRKLGYELEGPY 558 (564)
Q Consensus 507 ~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s---~~~a~~fY~klGy~~~g~~ 558 (564)
.++++.+-+..|+-++.++|+++ |++...+-. +.+...|=++.|++....+
T Consensus 229 ~~~~~~~~~~lL~w~~i~~a~~~-G~~~fDfG~s~~~~G~~~FK~~~G~~~~~l~ 282 (330)
T TIGR03019 229 REARDVAANDLMYWELMRRACER-GLRVFDFGRSKRGTGPFKFKKNWGFEPQPLH 282 (330)
T ss_pred HHHHhhChHHHHHHHHHHHHHHC-CCcEEEcCCCCCCCccHHHHhcCCCeeccce
Confidence 34899999999999999999995 999987642 3478888899999987643
No 394
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=30.34 E-value=5.7e+02 Score=25.61 Aligned_cols=83 Identities=12% Similarity=0.122 Sum_probs=47.5
Q ss_pred HHHHHHHcCCCCCcEEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCH-
Q 008466 168 RIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLG- 246 (564)
Q Consensus 168 r~~~l~~~g~~~~kve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~- 246 (564)
...++.+.|+..-|++ .|+++ +.-.+.++.+++.+. ..+.+.+.+|-.+-.+
T Consensus 92 ~~~~~~~~G~~~~KiK---vg~~~-----~~d~~~v~~vr~~~g-------------------~~~~l~vDan~~~~~~~ 144 (265)
T cd03315 92 EARRALEAGFRTFKLK---VGRDP-----ARDVAVVAALREAVG-------------------DDAELRVDANRGWTPKQ 144 (265)
T ss_pred HHHHHHHCCCCEEEEe---cCCCH-----HHHHHHHHHHHHhcC-------------------CCCEEEEeCCCCcCHHH
Confidence 3344556776555544 24332 333456777777664 2345666666543222
Q ss_pred --HHHHHHHHcCCCeEEEccCCCCHHHHHhcCC
Q 008466 247 --PHLRQMLSYGCTRLEIGVQSTYEDVARDTNR 277 (564)
Q Consensus 247 --e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~R 277 (564)
+.++.|.++|+.+|+-.+...+-+.++.+.+
T Consensus 145 a~~~~~~l~~~~i~~iEeP~~~~d~~~~~~l~~ 177 (265)
T cd03315 145 AIRALRALEDLGLDYVEQPLPADDLEGRAALAR 177 (265)
T ss_pred HHHHHHHHHhcCCCEEECCCCcccHHHHHHHHh
Confidence 3445666678888888777666666655544
No 395
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=29.96 E-value=8.2e+02 Score=27.35 Aligned_cols=155 Identities=16% Similarity=0.129 Sum_probs=85.9
Q ss_pred EEEEEE-eeCCCCCHHHHHHHHHc------CCCeE-EEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCc-EEEEE-
Q 008466 233 IGMTIE-TRPDYCLGPHLRQMLSY------GCTRL-EIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFK-VVAHM- 302 (564)
Q Consensus 233 ~eitiE-trPd~i~~e~L~~L~~~------G~~rv-siGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~-v~~~l- 302 (564)
..+-+. ..|..++.+.+..+.+. +...+ ++-+++++++.+ | .+.++.++++|+. +.+.+
T Consensus 220 ~tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~i-------t----~e~L~~Lk~~Gv~RISIGvQ 288 (488)
T PRK08207 220 TTIYFGGGTPTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTI-------T----EEKLEVLKKYGVDRISINPQ 288 (488)
T ss_pred eEEEEeCCCccCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCC-------C----HHHHHHHHhcCCCeEEEcCC
Confidence 345555 38888887776665542 33333 444444333322 1 2345566667764 22111
Q ss_pred --------ecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 303 --------MPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 303 --------I~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
.+|- +.|.++..+.++.+. +.+.+.|.+.-..=.||- +.++..+.+..+.++-|
T Consensus 289 S~~d~vLk~igR-~ht~e~v~~ai~~ar---~~Gf~~In~DLI~GLPgE--------------t~ed~~~tl~~l~~L~p 350 (488)
T PRK08207 289 TMNDETLKAIGR-HHTVEDIIEKFHLAR---EMGFDNINMDLIIGLPGE--------------GLEEVKHTLEEIEKLNP 350 (488)
T ss_pred cCCHHHHHHhCC-CCCHHHHHHHHHHHH---hCCCCeEEEEEEeCCCCC--------------CHHHHHHHHHHHHhcCc
Confidence 2244 357777888887775 456667766655544443 46677777777788878
Q ss_pred CceEEeeeecCCChhHHHh-C-C------CcchHHHHHHhhccccCCccc
Q 008466 375 PWTRVYRVQRDIPMPLVTS-G-V------EKGNLRELALARMDDLGLKCR 416 (564)
Q Consensus 375 ~~iri~Ri~rdip~~l~~~-G-~------~~~~~~~~a~~~~~~~g~~c~ 416 (564)
..+.++.+.-.-...+... + + ....+-+++...+++.|+.-.
T Consensus 351 d~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l~~~Gy~~Y 400 (488)
T PRK08207 351 ESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWAKELGYVPY 400 (488)
T ss_pred CEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHHHHcCCHhh
Confidence 8888887752211122211 1 0 112355677788888886543
No 396
>PLN02417 dihydrodipicolinate synthase
Probab=29.80 E-value=6.2e+02 Score=25.84 Aligned_cols=107 Identities=12% Similarity=0.127 Sum_probs=69.4
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCC
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESP 325 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~ 325 (564)
.++++.+.+.|++-|-++=-|+.-.. .|.++-.+.++.+.+. ..-.+-+|.|.-..+.++..+..+...
T Consensus 25 ~~~i~~l~~~Gv~Gi~~~GstGE~~~-------ls~~Er~~~~~~~~~~-~~~~~pvi~gv~~~~t~~~i~~a~~a~--- 93 (280)
T PLN02417 25 DSLVNMQIENGAEGLIVGGTTGEGQL-------MSWDEHIMLIGHTVNC-FGGKIKVIGNTGSNSTREAIHATEQGF--- 93 (280)
T ss_pred HHHHHHHHHcCCCEEEECccCcchhh-------CCHHHHHHHHHHHHHH-hCCCCcEEEECCCccHHHHHHHHHHHH---
Confidence 45667777789999988776653333 2456666666665554 111234678887777777888887776
Q ss_pred CCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEe
Q 008466 326 LFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVY 380 (564)
Q Consensus 326 ~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~ 380 (564)
+.+.|.+-+.| |. |..+++++.++.+..+.+.. | +-+|
T Consensus 94 ~~Gadav~~~~-------P~--------y~~~~~~~i~~~f~~va~~~-p-i~lY 131 (280)
T PLN02417 94 AVGMHAALHIN-------PY--------YGKTSQEGLIKHFETVLDMG-P-TIIY 131 (280)
T ss_pred HcCCCEEEEcC-------Cc--------cCCCCHHHHHHHHHHHHhhC-C-EEEE
Confidence 57889877653 22 22367888888887776654 3 3444
No 397
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=29.62 E-value=2.3e+02 Score=28.08 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCH-HHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHh
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTV-AAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFF 322 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~-~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~ 322 (564)
.+.++.+.++|++++.+-|--+. .-.+.|. -++++ .+|+. .+.+.+|||+- +++.+.+.+..
T Consensus 15 ~~~i~~l~~~g~~~lH~DvmDG~------Fvpn~tfg~~~i~---~i~~~~~~~~~dvHLMv~----~p~~~i~~~~~-- 79 (220)
T PRK08883 15 GEDVEKVLAAGADVVHFDVMDNH------YVPNLTFGAPICK---ALRDYGITAPIDVHLMVK----PVDRIIPDFAK-- 79 (220)
T ss_pred HHHHHHHHHcCCCEEEEecccCc------ccCccccCHHHHH---HHHHhCCCCCEEEEeccC----CHHHHHHHHHH--
Confidence 47899999999999999875421 0011121 22333 34442 57789999995 56776666544
Q ss_pred cCCCCCCCeEEEeee
Q 008466 323 ESPLFRADGLKIYPT 337 (564)
Q Consensus 323 ~~~~l~pd~i~iy~l 337 (564)
.++|.|++|.=
T Consensus 80 ----~gad~i~~H~E 90 (220)
T PRK08883 80 ----AGASMITFHVE 90 (220)
T ss_pred ----hCCCEEEEccc
Confidence 46899998853
No 398
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=29.49 E-value=4.5e+02 Score=27.32 Aligned_cols=137 Identities=18% Similarity=0.171 Sum_probs=89.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCH---HHHHHHHHcCCCeEEEccCCCCH
Q 008466 193 SLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLG---PHLRQMLSYGCTRLEIGVQSTYE 269 (564)
Q Consensus 193 ~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~---e~L~~L~~~G~~rvsiGvQS~~d 269 (564)
.+|+..+..|++.+...-+ ....+.+.+-.|-..... +.+..|++.|++---|=++.-++
T Consensus 31 NlP~~Ll~~l~~~~~~~~~-----------------~~~~~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~ 93 (284)
T PF03668_consen 31 NLPPSLLPQLIELLAQSNS-----------------KIEKVAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDE 93 (284)
T ss_pred CCcHHHHHHHHHHHHhcCC-----------------CCceEEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChH
Confidence 3789988888887764322 123466777776654433 45666777887766666777777
Q ss_pred HHHH---hcCCCCCHH---HHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecC
Q 008466 270 DVAR---DTNRGHTVA---AVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIR 341 (564)
Q Consensus 270 ~vL~---~i~Rght~~---~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~ 341 (564)
..++ ...|.|... ...++++.=|+. .++-.+|+++.--+-+..++.+.+...+....-..-.|.+..+--+.
T Consensus 94 ~LirRy~eTRR~HPL~~~~~~le~I~~Er~~L~~lr~~Ad~vIDTs~l~~~~Lr~~i~~~~~~~~~~~l~v~i~SFGfK~ 173 (284)
T PF03668_consen 94 VLIRRYSETRRRHPLSSDGSLLEAIEKERELLEPLRERADLVIDTSNLSVHQLRERIRERFGGDKESRLTVTIQSFGFKY 173 (284)
T ss_pred HHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHHhccCCCCceEEEEEEecccc
Confidence 7766 456888763 356777665553 45566899998888899998888888764211112345666666666
Q ss_pred CChhH
Q 008466 342 GTGLY 346 (564)
Q Consensus 342 GT~L~ 346 (564)
|.|..
T Consensus 174 GiP~d 178 (284)
T PF03668_consen 174 GIPPD 178 (284)
T ss_pred CCCCC
Confidence 76643
No 399
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=29.40 E-value=6.3e+02 Score=25.83 Aligned_cols=61 Identities=15% Similarity=0.236 Sum_probs=44.2
Q ss_pred EEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCH-HHHHhcC---------CC-C-CHHHHHHHHHHHHHcCCc
Q 008466 234 GMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYE-DVARDTN---------RG-H-TVAAVADCFCLAKDAGFK 297 (564)
Q Consensus 234 eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d-~vL~~i~---------Rg-h-t~~~~~~ai~~lr~~G~~ 297 (564)
++.+-+.| ++.+.++.+.+. +..+-||--++.+ ..|+.+. +| . +.+++..|++.++..|-.
T Consensus 91 Gl~~~te~--~d~~~~~~l~~~-vd~~kIga~~~~n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~ 163 (266)
T PRK13398 91 NLPVVTEV--MDTRDVEEVADY-ADMLQIGSRNMQNFELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSEGNE 163 (266)
T ss_pred CCCEEEee--CChhhHHHHHHh-CCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCC
Confidence 34455544 567788888888 9999999866655 4677654 34 3 788888888888887765
No 400
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=29.29 E-value=1.9e+02 Score=31.64 Aligned_cols=75 Identities=12% Similarity=0.161 Sum_probs=50.1
Q ss_pred HHHHHHHHHcCC--CeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEE-EEEecCCCCCC-----HHHHHHH
Q 008466 246 GPHLRQMLSYGC--TRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVV-AHMMPDLPNVG-----VERDLES 317 (564)
Q Consensus 246 ~e~L~~L~~~G~--~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~-~~lI~GLPget-----~e~~~~t 317 (564)
+..|+..++.|+ +.|++=|=|+..+.-... +.+.+.+..++...+.||+.. .|+--|+||.. .++..+.
T Consensus 196 ~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~---~Ai~dAr~vfd~g~e~Gf~m~~LdiGGGf~g~~~~~~~fe~i~~~ 272 (448)
T KOG0622|consen 196 RHLLDMAKELELNVVGVSFHVGSGCTDLQAYR---DAISDARNVFDMGAELGFEMDILDIGGGFPGDEGHAVVFEEIADV 272 (448)
T ss_pred HHHHHHHHHcCceEEEEEEEecCCCCCHHHHH---HHHHHHHHHHHHHHhcCceEEEeecCCCCCCccchhhhhhhHHHH
Confidence 456666677775 556666655544433322 234566666777778899955 59999999998 6777777
Q ss_pred HHHHhc
Q 008466 318 FREFFE 323 (564)
Q Consensus 318 ~~~~~~ 323 (564)
++.+++
T Consensus 273 In~ald 278 (448)
T KOG0622|consen 273 INTALD 278 (448)
T ss_pred HHHHHH
Confidence 777765
No 401
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=29.14 E-value=2.6e+02 Score=27.89 Aligned_cols=76 Identities=7% Similarity=0.036 Sum_probs=44.6
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEE-EecC-C----------CCCCHH
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAH-MMPD-L----------PNVGVE 312 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~-lI~G-L----------Pget~e 312 (564)
-++.++.++++|++.|++... ...+.++ .-+.+++.|+++..+ +-+| + |+ ..+
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~~-----------~~~~~~~---~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 81 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMFP-----------YDYDIEE---LKQVLASNKLEHTLHNLPAGDWAAGERGIACIPG-REE 81 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcCC-----------CCCCHHH---HHHHHHHcCCcEEEEcCCCCccccCcCccccCCC-cHH
Confidence 467899999999999999531 1234444 444567899998753 2221 1 21 233
Q ss_pred HHHHHHHHHhcC-CCCCCCeEEEe
Q 008466 313 RDLESFREFFES-PLFRADGLKIY 335 (564)
Q Consensus 313 ~~~~t~~~~~~~-~~l~pd~i~iy 335 (564)
...+.++.+++. ..++.+.|.+.
T Consensus 82 ~~~~~~~~~i~~a~~lga~~i~~~ 105 (258)
T PRK09997 82 EFRDGVAAAIRYARALGNKKINCL 105 (258)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEC
Confidence 334444444433 35777877653
No 402
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=29.09 E-value=7.9e+02 Score=26.88 Aligned_cols=111 Identities=19% Similarity=0.242 Sum_probs=78.2
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHh
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRG--HTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFF 322 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~ 322 (564)
..+.++.+..+|+.+|.+=+=|-+-.+-..++.. ...+.+.++++.+++.|+.+..+..-.. ..+++.+.+.++.+.
T Consensus 78 ~~~~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~-rt~~~~l~~~~~~~~ 156 (409)
T COG0119 78 IKRDIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDAT-RTDPEFLAEVVKAAI 156 (409)
T ss_pred HHhhHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccc-cCCHHHHHHHHHHHH
Confidence 3458899999999999887755555554555532 3456677899999999988887665555 667777777777776
Q ss_pred cCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 323 ESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 323 ~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
..+.+.|.+ +.|- | -.++.++.+++..+...+|+
T Consensus 157 ---~~ga~~i~l------~DTv-------G---~~~P~~~~~~i~~l~~~v~~ 190 (409)
T COG0119 157 ---EAGADRINL------PDTV-------G---VATPNEVADIIEALKANVPN 190 (409)
T ss_pred ---HcCCcEEEE------CCCc-------C---ccCHHHHHHHHHHHHHhCCC
Confidence 345565544 3441 1 24678888899999998874
No 403
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=28.98 E-value=58 Score=25.31 Aligned_cols=60 Identities=20% Similarity=0.167 Sum_probs=39.7
Q ss_pred EEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEE
Q 008466 235 MTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVV 299 (564)
Q Consensus 235 itiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~ 299 (564)
+.++-+|. .-.+.++.|.+.|++-.++.+....+. .+=|-.+ ++..++.+.++++||++.
T Consensus 6 v~v~d~pG-~La~v~~~l~~~~inI~~i~~~~~~~~---~~~rl~~-~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 6 VFLENKPG-RLAAVTEILSEAGINIRALSIADTSEF---GILRLIV-SDPDKAKEALKEAGFAVK 65 (66)
T ss_pred EEEcCCCC-hHHHHHHHHHHCCCCEEEEEEEecCCC---CEEEEEE-CCHHHHHHHHHHCCCEEE
Confidence 33334676 445688999999999988887544332 2222223 455688888999999864
No 404
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=28.94 E-value=3.2e+02 Score=26.35 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=45.2
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc-CCcEEEEEecCCCCCCHHHHHHHHHHHhc
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA-GFKVVAHMMPDLPNVGVERDLESFREFFE 323 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~-G~~v~~~lI~GLPget~e~~~~t~~~~~~ 323 (564)
..+.++.+.++|++.|.+++-... ... +..-..+.++.+++. ...+.+|+|.. +.+++.+.+ .
T Consensus 18 ~~~~~~~~~~~G~~~i~l~~~d~~-----~~~---~~~~~~~~~~~i~~~~~~~~~v~l~v~----d~~~~i~~~---~- 81 (220)
T PRK05581 18 LGEEVKAVEAAGADWIHVDVMDGH-----FVP---NLTIGPPVVEAIRKVTKLPLDVHLMVE----NPDRYVPDF---A- 81 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCccCC-----cCC---CcCcCHHHHHHHHhcCCCcEEEEeeeC----CHHHHHHHH---H-
Confidence 457889999999999999753221 000 101123455555543 24566888887 333333333 2
Q ss_pred CCCCCCCeEEEeeee
Q 008466 324 SPLFRADGLKIYPTL 338 (564)
Q Consensus 324 ~~~l~pd~i~iy~l~ 338 (564)
+.++|.+.+|...
T Consensus 82 --~~g~d~v~vh~~~ 94 (220)
T PRK05581 82 --KAGADIITFHVEA 94 (220)
T ss_pred --HcCCCEEEEeecc
Confidence 4678999888754
No 405
>PLN02960 alpha-amylase
Probab=28.87 E-value=90 Score=37.37 Aligned_cols=60 Identities=12% Similarity=-0.004 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCH---------HHHHhc-CCCCCHHHHHHHHHHHHHcCCcEEEEEecC
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYE---------DVARDT-NRGHTVAAVADCFCLAKDAGFKVVAHMMPD 305 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d---------~vL~~i-~Rght~~~~~~ai~~lr~~G~~v~~~lI~G 305 (564)
++.|..++++|+|.|+|-+=.-.+ .-.-.+ .|--|.+++...++.+++.||+|++|+.++
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDvV~N 489 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDIVHS 489 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 456999999999999987632111 011112 233478999999999999999999998654
No 406
>PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2.8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A.
Probab=28.77 E-value=89 Score=26.50 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=21.8
Q ss_pred eeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCC
Q 008466 336 PTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPP 375 (564)
Q Consensus 336 ~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~ 375 (564)
-|.+.+|||+.. ..++++++.+..++.+.-.+|.
T Consensus 4 ~l~P~~Gtpl~~------~~~l~~~e~lr~ia~~Rl~~P~ 37 (93)
T PF06968_consen 4 FLRPIPGTPLED------PPPLSDEEFLRIIAAFRLLLPE 37 (93)
T ss_dssp E----TTSTTTT------S----HHHHHHHHHHHHHHSTT
T ss_pred eEEeCCCCCCCC------CCCCCHHHHHHHHHHHHHHCCC
Confidence 388999999943 3568999999999988888875
No 407
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=28.22 E-value=6.9e+02 Score=25.93 Aligned_cols=109 Identities=9% Similarity=0.070 Sum_probs=70.4
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCC
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESP 325 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~ 325 (564)
.++++.|.+.|++-|-++=-|+---. -|.++..+.++.+.+. .+-.+-+|.|.-..+.++.++..+...
T Consensus 32 ~~lv~~li~~Gv~Gi~v~GstGE~~~-------Lt~eEr~~v~~~~~~~-~~grvpvi~Gv~~~~t~~ai~~a~~A~--- 100 (309)
T cd00952 32 ARLVERLIAAGVDGILTMGTFGECAT-------LTWEEKQAFVATVVET-VAGRVPVFVGATTLNTRDTIARTRALL--- 100 (309)
T ss_pred HHHHHHHHHcCCCEEEECcccccchh-------CCHHHHHHHHHHHHHH-hCCCCCEEEEeccCCHHHHHHHHHHHH---
Confidence 45667777889999988654442222 3566777777766654 121235678887677777777777775
Q ss_pred CCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC-CceEEe
Q 008466 326 LFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP-PWTRVY 380 (564)
Q Consensus 326 ~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp-~~iri~ 380 (564)
+.+.|.+-+.+ |. |-++++++.++.+..+.+..| --+-+|
T Consensus 101 ~~Gad~vlv~~-------P~--------y~~~~~~~l~~yf~~va~a~~~lPv~iY 141 (309)
T cd00952 101 DLGADGTMLGR-------PM--------WLPLDVDTAVQFYRDVAEAVPEMAIAIY 141 (309)
T ss_pred HhCCCEEEECC-------Cc--------CCCCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 57889887764 22 234677888888887777663 234444
No 408
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=28.06 E-value=7.1e+02 Score=26.02 Aligned_cols=79 Identities=13% Similarity=0.105 Sum_probs=49.4
Q ss_pred EEEEEe-eCCCCCHHHHHH---HHHcCCCeEEEccCCCCHHHHHhcCC--CCCHHHHHHHHHHHHHcCCc-EEEEEecCC
Q 008466 234 GMTIET-RPDYCLGPHLRQ---MLSYGCTRLEIGVQSTYEDVARDTNR--GHTVAAVADCFCLAKDAGFK-VVAHMMPDL 306 (564)
Q Consensus 234 eitiEt-rPd~i~~e~L~~---L~~~G~~rvsiGvQS~~d~vL~~i~R--ght~~~~~~ai~~lr~~G~~-v~~~lI~GL 306 (564)
.+.+.. .|..++++.++. |+++| +.+..||. +-| +.+.+++.+.++.+.+.|+. ..++.+.-.
T Consensus 201 ~i~l~~~h~~el~~~~~~ai~~L~~~G---i~v~~q~v-------Ll~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~ 270 (321)
T TIGR03822 201 YVALHANHARELTAEARAACARLIDAG---IPMVSQSV-------LLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLA 270 (321)
T ss_pred EEEecCCChhhcCHHHHHHHHHHHHcC---CEEEEEee-------EeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCC
Confidence 455664 465566655554 44566 46667764 333 35677888889999999997 445666666
Q ss_pred CCC-----CHHHHHHHHHHHh
Q 008466 307 PNV-----GVERDLESFREFF 322 (564)
Q Consensus 307 Pge-----t~e~~~~t~~~~~ 322 (564)
||. +.++..+.++++.
T Consensus 271 ~g~~~f~~~~~~~~~i~~~l~ 291 (321)
T TIGR03822 271 PGTAHFRVTIEEGQALVRALR 291 (321)
T ss_pred CCcccccCcHHHHHHHHHHHH
Confidence 663 3445555555554
No 409
>TIGR03586 PseI pseudaminic acid synthase.
Probab=27.94 E-value=5.5e+02 Score=27.22 Aligned_cols=84 Identities=19% Similarity=0.245 Sum_probs=58.3
Q ss_pred EEEEEeeCCCCCHHHHHHHHHcCCCeEEEcc-CCCCHHHHHhcC---------CC-CCHHHHHHHHHHHHHcCCc-EE-E
Q 008466 234 GMTIETRPDYCLGPHLRQMLSYGCTRLEIGV-QSTYEDVARDTN---------RG-HTVAAVADCFCLAKDAGFK-VV-A 300 (564)
Q Consensus 234 eitiEtrPd~i~~e~L~~L~~~G~~rvsiGv-QS~~d~vL~~i~---------Rg-ht~~~~~~ai~~lr~~G~~-v~-~ 300 (564)
++.+-+.| ++.+.++.+.++|+..+-||= +..|-..|+.+. +| .|.+++..|++.+++.|-+ +. .
T Consensus 90 Gi~~~stp--fd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i~Ll 167 (327)
T TIGR03586 90 GLTIFSSP--FDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGIATLEEIQEAVEACREAGCKDLVLL 167 (327)
T ss_pred CCcEEEcc--CCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEE
Confidence 45666666 578899999999999888875 334466666554 33 4789999999999999884 44 4
Q ss_pred EEecCCCCCCHHHHHHHHH
Q 008466 301 HMMPDLPNVGVERDLESFR 319 (564)
Q Consensus 301 ~lI~GLPget~e~~~~t~~ 319 (564)
|=..+.|-...+-.+..+.
T Consensus 168 hC~s~YP~~~~~~nL~~i~ 186 (327)
T TIGR03586 168 KCTSSYPAPLEDANLRTIP 186 (327)
T ss_pred ecCCCCCCCcccCCHHHHH
Confidence 7777888533332333333
No 410
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=27.93 E-value=2.8e+02 Score=27.65 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCH-HHHHHHHHHHHHc--CCcEEEEEecCCCCCCHHHHHHHHHHHh
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTV-AAVADCFCLAKDA--GFKVVAHMMPDLPNVGVERDLESFREFF 322 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~-~~~~~ai~~lr~~--G~~v~~~lI~GLPget~e~~~~t~~~~~ 322 (564)
.+.++.+.++|++++.+-|--+.= + -+.|. -+ .++.+++. .+.+.+|||+- +++.+.+.+..
T Consensus 19 ~~~i~~l~~~g~d~lHiDimDG~F-----V-PN~tfg~~---~i~~lr~~~~~~~~dvHLMv~----~P~~~i~~~~~-- 83 (223)
T PRK08745 19 GEEVDNVLKAGADWVHFDVMDNHY-----V-PNLTIGPM---VCQALRKHGITAPIDVHLMVE----PVDRIVPDFAD-- 83 (223)
T ss_pred HHHHHHHHHcCCCEEEEecccCcc-----C-CCcccCHH---HHHHHHhhCCCCCEEEEeccC----CHHHHHHHHHH--
Confidence 578999999999999998754210 0 01111 12 33344443 57788999995 46666655543
Q ss_pred cCCCCCCCeEEEeee
Q 008466 323 ESPLFRADGLKIYPT 337 (564)
Q Consensus 323 ~~~~l~pd~i~iy~l 337 (564)
.++|.|++|.=
T Consensus 84 ----~gad~I~~H~E 94 (223)
T PRK08745 84 ----AGATTISFHPE 94 (223)
T ss_pred ----hCCCEEEEccc
Confidence 46899998853
No 411
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=27.91 E-value=6.8e+02 Score=25.75 Aligned_cols=109 Identities=17% Similarity=0.100 Sum_probs=71.5
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCC
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESP 325 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~ 325 (564)
.++++.+.+.|++-|-++=-|+.-.. .|.++-.+.++.+.+. ..-.+-+|.|.-..+.++.++..+...
T Consensus 24 ~~lv~~~~~~Gv~gi~v~GstGE~~~-------Ls~~Er~~l~~~~~~~-~~g~~pvi~gv~~~~t~~ai~~a~~A~--- 92 (294)
T TIGR02313 24 RELIEFQIEGGSHAISVGGTSGEPGS-------LTLEERKQAIENAIDQ-IAGRIPFAPGTGALNHDETLELTKFAE--- 92 (294)
T ss_pred HHHHHHHHHcCCCEEEECccCccccc-------CCHHHHHHHHHHHHHH-hCCCCcEEEECCcchHHHHHHHHHHHH---
Confidence 45667777789998887654443222 3667777777766553 111245678887778877788877775
Q ss_pred CCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC-CceEEe
Q 008466 326 LFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP-PWTRVY 380 (564)
Q Consensus 326 ~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp-~~iri~ 380 (564)
+++.|.+-+.| |. |.++++++.++.+..+.+..| --+-+|
T Consensus 93 ~~Gad~v~v~p-------P~--------y~~~~~~~l~~~f~~ia~a~~~lpv~iY 133 (294)
T TIGR02313 93 EAGADAAMVIV-------PY--------YNKPNQEALYDHFAEVADAVPDFPIIIY 133 (294)
T ss_pred HcCCCEEEEcC-------cc--------CCCCCHHHHHHHHHHHHHhccCCCEEEE
Confidence 67899887764 22 334678888888888777663 335555
No 412
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=27.43 E-value=1.2e+02 Score=31.01 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=41.6
Q ss_pred HHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEE
Q 008466 248 HLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHM 302 (564)
Q Consensus 248 ~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~l 302 (564)
..+..++.|-+|+.+|- .-.+..+|..+...+.+-++.+++.|+.+++-+
T Consensus 125 ~Ak~AK~~GSTRFCmGa-----AWRD~~GRk~~fk~IlE~ikevr~MgmEvCvTL 174 (380)
T KOG2900|consen 125 EAKEAKRNGSTRFCMGA-----AWRDMKGRKSAFKRILEMIKEVRDMGMEVCVTL 174 (380)
T ss_pred HHHHHHhcCCceeecch-----hhhhhccchhHHHHHHHHHHHHHcCCceeeeee
Confidence 44556678999999984 456678899999999999999999999988754
No 413
>PTZ00064 histone acetyltransferase; Provisional
Probab=27.28 E-value=92 Score=34.72 Aligned_cols=22 Identities=36% Similarity=0.696 Sum_probs=20.4
Q ss_pred hhhcCHHHHHHHHHHHHHHhcCC
Q 008466 509 LQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 509 ~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
||.+|||+.||+..=..++.+ |
T Consensus 396 yQRKGYGklLIdfSYeLSrrE-g 417 (552)
T PTZ00064 396 YQRKGYGKLLVDLSYKLSLKE-G 417 (552)
T ss_pred hhhcchhhhhhhhhhhhhhhc-C
Confidence 999999999999999999886 5
No 414
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=27.05 E-value=4.3e+02 Score=26.65 Aligned_cols=86 Identities=20% Similarity=0.190 Sum_probs=60.9
Q ss_pred EEEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCC----CHHHHHHHHHHHHHcCCcEEEEEecCCCC
Q 008466 233 IGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGH----TVAAVADCFCLAKDAGFKVVAHMMPDLPN 308 (564)
Q Consensus 233 ~eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rgh----t~~~~~~ai~~lr~~G~~v~~~lI~GLPg 308 (564)
.++.+|..| ++|.++...+..-.++.+-++.-.+-+ ..-|. ..+.+.+.++.++++|+.|+..+=+.
T Consensus 63 ~~lNlE~a~---t~em~~ia~~~kP~~vtLVPEkr~E~T---TegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDPd--- 133 (234)
T cd00003 63 TELNLEMAP---TEEMLEIALEVKPHQVTLVPEKREELT---TEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPD--- 133 (234)
T ss_pred CCEEeccCC---CHHHHHHHHHCCCCEEEECCCCCCCcc---CCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCC---
Confidence 367788777 588999999998899999887654433 11222 34778889999999999988766332
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCeEEEee
Q 008466 309 VGVERDLESFREFFESPLFRADGLKIYP 336 (564)
Q Consensus 309 et~e~~~~t~~~~~~~~~l~pd~i~iy~ 336 (564)
.+.++... +.+.|.|-+|.
T Consensus 134 ------~~qi~~A~---~~GAd~VELhT 152 (234)
T cd00003 134 ------PEQIEAAK---EVGADRVELHT 152 (234)
T ss_pred ------HHHHHHHH---HhCcCEEEEec
Confidence 23444444 46789999983
No 415
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=27.04 E-value=4.8e+02 Score=26.00 Aligned_cols=51 Identities=14% Similarity=0.038 Sum_probs=34.4
Q ss_pred CHHHHHHHHHcCCCeEEEccCCC--CHHHHHhcCCCCCHHHHHHHHHHHHHcCCcE
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQST--YEDVARDTNRGHTVAAVADCFCLAKDAGFKV 298 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~--~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v 298 (564)
+++.+..|.+.|+.-+=+.|-+. ++ +.++|..+.+.+.+..++.+..|+.+
T Consensus 122 d~~~l~e~i~~Gf~aiIv~v~~~gL~~---~~LGr~id~~~~~~L~~l~~~~gid~ 174 (222)
T TIGR00289 122 DPEKLMYEVAEKFEVIIVSVSAMGLDE---SWLGRRIDKECIDDLKRLNEKYGIHL 174 (222)
T ss_pred CHHHHHHHHHcCCeEEEEEEccCCCCh---HHcCCccCHHHHHHHHHHHhhcCccc
Confidence 44555678899998887777663 43 37888877665655555566678763
No 416
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=26.74 E-value=3.8e+02 Score=26.98 Aligned_cols=11 Identities=18% Similarity=0.214 Sum_probs=7.1
Q ss_pred HHHHHHHHhhc
Q 008466 37 AEIVNSMVELS 47 (564)
Q Consensus 37 ~~i~~~~~~~~ 47 (564)
.+|++.|.+.+
T Consensus 23 ~~i~~~L~~~G 33 (259)
T cd07939 23 LAIARALDEAG 33 (259)
T ss_pred HHHHHHHHHcC
Confidence 55677776655
No 417
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=26.71 E-value=9.6e+02 Score=27.05 Aligned_cols=107 Identities=14% Similarity=0.083 Sum_probs=64.5
Q ss_pred HHHHHHHHHc----CCCeEEEccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHcCCcEEEEEecCCCCC---CHHHHHH
Q 008466 246 GPHLRQMLSY----GCTRLEIGVQSTYEDVARDTNRG--HTVAAVADCFCLAKDAGFKVVAHMMPDLPNV---GVERDLE 316 (564)
Q Consensus 246 ~e~L~~L~~~----G~~rvsiGvQS~~d~vL~~i~Rg--ht~~~~~~ai~~lr~~G~~v~~~lI~GLPge---t~e~~~~ 316 (564)
.+.++...++ |+.+|.+-+=+.+-.....+|+. ...+.+.++++.+++.|+.. ..+|.+.. +++-+.+
T Consensus 167 ~~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~---v~f~~EDa~Rtd~efl~~ 243 (503)
T PLN03228 167 KRDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHD---IQFGCEDGGRSDKEFLCK 243 (503)
T ss_pred HhhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCce---EEeccccccccCHHHHHH
Confidence 3455555554 77889887755444445566653 34566778999999999862 23333333 3444566
Q ss_pred HHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 317 SFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 317 t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
.++.+. +.+++.|.+- .|- | ...+++..+++..+.+.+|
T Consensus 244 ~~~~a~---~~Gad~I~l~------DTv-------G---~~tP~~v~~lV~~l~~~~~ 282 (503)
T PLN03228 244 ILGEAI---KAGATSVGIA------DTV-------G---INMPHEFGELVTYVKANTP 282 (503)
T ss_pred HHHHHH---hcCCCEEEEe------cCC-------C---CCCHHHHHHHHHHHHHHhc
Confidence 666665 5678876542 331 1 2456677777777766654
No 418
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=26.65 E-value=54 Score=32.67 Aligned_cols=62 Identities=15% Similarity=0.108 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHcCCCeEEEccC--CCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecC
Q 008466 244 CLGPHLRQMLSYGCTRLEIGVQ--STYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPD 305 (564)
Q Consensus 244 i~~e~L~~L~~~G~~rvsiGvQ--S~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~G 305 (564)
..++.++.|++.|++.|-|-+- ..-+..-...-.....+.+.+.++.+++.|+.|++|+...
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~ 85 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA 85 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 7889999999999865544443 3221000000001234778899999999999988877663
No 419
>PRK09989 hypothetical protein; Provisional
Probab=26.55 E-value=3.1e+02 Score=27.34 Aligned_cols=77 Identities=5% Similarity=-0.007 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEE-EEecC-CC-C--------CCHHHH
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA-HMMPD-LP-N--------VGVERD 314 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~-~lI~G-LP-g--------et~e~~ 314 (564)
++.++.++++|++.|++.. . -+++.++ .-+.+++.|+++.. +.-++ ++ + ...+..
T Consensus 18 ~~~l~~~~~~Gfd~VEl~~--~---------~~~~~~~---~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (258)
T PRK09989 18 IERFAAARKAGFDAVEFLF--P---------YDYSTLQ---IQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEA 83 (258)
T ss_pred HHHHHHHHHcCCCEEEECC--c---------ccCCHHH---HHHHHHHcCCcEEEeccCCCccCCCCCcccCCCccHHHH
Confidence 5789999999999999943 1 1255444 45557789999764 43211 11 1 122333
Q ss_pred HHHHHHHhcC-CCCCCCeEEEee
Q 008466 315 LESFREFFES-PLFRADGLKIYP 336 (564)
Q Consensus 315 ~~t~~~~~~~-~~l~pd~i~iy~ 336 (564)
.+.++.+++. ..++.+.|.+.+
T Consensus 84 ~~~l~~~i~~A~~lg~~~v~v~~ 106 (258)
T PRK09989 84 RADIDLALEYALALNCEQVHVMA 106 (258)
T ss_pred HHHHHHHHHHHHHhCcCEEEECc
Confidence 4455554432 356777776544
No 420
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=26.54 E-value=3.7e+02 Score=25.55 Aligned_cols=43 Identities=21% Similarity=0.198 Sum_probs=31.7
Q ss_pred eecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCCCcEEEEecCC
Q 008466 494 VYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGV 541 (564)
Q Consensus 494 vyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g~~~i~~~s~~ 541 (564)
+...-+.||++ .|.+++.-.|+.+.-+.+..+ |+-.-.-++++
T Consensus 111 ~eINFLCVhKk----lRskrlAPvLIkEItRRvn~~-gI~qAvyTag~ 153 (162)
T PF01233_consen 111 VEINFLCVHKK----LRSKRLAPVLIKEITRRVNLQ-GIWQAVYTAGV 153 (162)
T ss_dssp EEEEEEEE-GG----GTTSSHHHHHHHHHHHHHHTT-T--EEEEEESS
T ss_pred eeEEEEeecHh----HhhcCCcHHHHHHHHHHhhhc-CceeeeeecCc
Confidence 33344568988 999999999999999999984 88776666654
No 421
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=26.13 E-value=5.6e+02 Score=27.12 Aligned_cols=98 Identities=15% Similarity=0.147 Sum_probs=60.7
Q ss_pred EEEEEEeeCCC----CCHHHHHHHHHcC--CCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc-C-----CcEEE
Q 008466 233 IGMTIETRPDY----CLGPHLRQMLSYG--CTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA-G-----FKVVA 300 (564)
Q Consensus 233 ~eitiEtrPd~----i~~e~L~~L~~~G--~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~-G-----~~v~~ 300 (564)
+.++|..++.+ .-++..+.+.+++ ++.|++++-+.+..-... ....+.+.+.++.+++. + +.+.+
T Consensus 140 vivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~---~~~~~~~~eiv~aVr~~~~~~~~~~PV~v 216 (344)
T PRK05286 140 LGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRD---LQYGEALDELLAALKEAQAELHGYVPLLV 216 (344)
T ss_pred EEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCccc---ccCHHHHHHHHHHHHHHHhccccCCceEE
Confidence 55666544322 3456777777776 899999997765542221 45556666666666653 3 56555
Q ss_pred EEecCCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeeeee
Q 008466 301 HMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLV 339 (564)
Q Consensus 301 ~lI~GLPget~e~~~~t~~~~~~~~~l~pd~i~iy~l~v 339 (564)
=+= |+.+.++..+.++.+. +.+.|.|.++..+.
T Consensus 217 Kls---p~~~~~~~~~ia~~l~---~~Gadgi~~~nt~~ 249 (344)
T PRK05286 217 KIA---PDLSDEELDDIADLAL---EHGIDGVIATNTTL 249 (344)
T ss_pred EeC---CCCCHHHHHHHHHHHH---HhCCcEEEEeCCcc
Confidence 443 3455556666666554 46799999987653
No 422
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=25.94 E-value=5.4e+02 Score=28.48 Aligned_cols=87 Identities=10% Similarity=0.183 Sum_probs=52.1
Q ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCC-CCHHHHHHHHHcCCCeE
Q 008466 182 VEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDY-CLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 182 ve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~-i~~e~L~~L~~~G~~rv 260 (564)
+..|..-+|.-.+.+.....+++.+++.++ +.|.+-++-+. +-....-...++|+++|
T Consensus 168 ad~I~i~Dt~G~l~P~~v~~lv~alk~~~~---------------------~pi~~H~Hnt~GlA~AN~laAieaGad~v 226 (448)
T PRK12331 168 ADSICIKDMAGILTPYVAYELVKRIKEAVT---------------------VPLEVHTHATSGIAEMTYLKAIEAGADII 226 (448)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHhcC---------------------CeEEEEecCCCCcHHHHHHHHHHcCCCEE
Confidence 456767777778888888888888887653 23555554331 22223333347899999
Q ss_pred EEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCc
Q 008466 261 EIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFK 297 (564)
Q Consensus 261 siGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~ 297 (564)
...+-++ +.+..--...+.+..++..|++
T Consensus 227 D~sv~gl--------g~gaGN~~tE~lv~~L~~~g~~ 255 (448)
T PRK12331 227 DTAISPF--------AGGTSQPATESMVAALQDLGYD 255 (448)
T ss_pred Eeecccc--------CCCcCCHhHHHHHHHHHhcCCC
Confidence 8888754 3333333344444444555665
No 423
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=25.80 E-value=68 Score=35.37 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=35.3
Q ss_pred EeecCCCeEEEEEEEEecCCCCCccccCCccceeeeeeeecccccccCCCchhhhhcCHHHHHHHHHHHHHHhcCC
Q 008466 456 YEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHR 531 (564)
Q Consensus 456 ~~d~~~~~lvG~lrlr~~~~~~~~~el~~~~~~~relhvyg~~~~v~~~~~~~~q~~GiG~~Lm~~aE~~A~~~~g 531 (564)
..|.....+|||+.=.+.+.. + -.|- =+.+... ||.+|||+.|++..=.+++.+ |
T Consensus 285 e~d~~g~h~vGyFSKEk~s~~-------~-----~NLa----CIltlP~----yQrkGyG~~LI~~SYeLSr~e-g 339 (450)
T PLN00104 285 ECDDRGCHMVGYFSKEKHSEE-------D-----YNLA----CILTLPP----YQRKGYGKFLIAFSYELSKRE-G 339 (450)
T ss_pred EecCCCcEEEEEecccccCcC-------C-----CceE----EEEecch----hhhcchhheehhheehhhhcc-C
Confidence 344445588999876544311 0 0110 1224554 999999999999998888876 5
No 424
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=25.39 E-value=7.2e+02 Score=25.32 Aligned_cols=81 Identities=25% Similarity=0.274 Sum_probs=51.6
Q ss_pred HHHHHHHHcCCCeEEEccCCCCHHHHHhcCC--CCCHHHHHHHHHHHHHc-CCcEEEEEecCCCCCCHHHHHHHHHHHhc
Q 008466 247 PHLRQMLSYGCTRLEIGVQSTYEDVARDTNR--GHTVAAVADCFCLAKDA-GFKVVAHMMPDLPNVGVERDLESFREFFE 323 (564)
Q Consensus 247 e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~R--ght~~~~~~ai~~lr~~-G~~v~~~lI~GLPget~e~~~~t~~~~~~ 323 (564)
+..+.+.++|++.|+|++-|.+-... +. +.+.+.+.+.++.++++ ++.+.+-+= |. .++..+.++.+.
T Consensus 106 ~~a~~~~~~G~d~iElN~~cP~~~~~---g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~---~~--~~~~~~~a~~~~- 176 (296)
T cd04740 106 EVAEKLADAGADAIELNISCPNVKGG---GMAFGTDPEAVAEIVKAVKKATDVPVIVKLT---PN--VTDIVEIARAAE- 176 (296)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCC---cccccCCHHHHHHHHHHHHhccCCCEEEEeC---CC--chhHHHHHHHHH-
Confidence 45566777899999999877653210 11 35677788888888887 777665542 22 223444455444
Q ss_pred CCCCCCCeEEEeeee
Q 008466 324 SPLFRADGLKIYPTL 338 (564)
Q Consensus 324 ~~~l~pd~i~iy~l~ 338 (564)
+.+.|.|.+..+.
T Consensus 177 --~~G~d~i~~~nt~ 189 (296)
T cd04740 177 --EAGADGLTLINTL 189 (296)
T ss_pred --HcCCCEEEEECCC
Confidence 4678988876543
No 425
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=25.35 E-value=1.4e+02 Score=33.92 Aligned_cols=63 Identities=13% Similarity=0.129 Sum_probs=50.5
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCHHH--------HHhcC-CCCCHHHHHHHHHHHHHcCCcEEEEEecCCCC
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYEDV--------ARDTN-RGHTVAAVADCFCLAKDAGFKVVAHMMPDLPN 308 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d~v--------L~~i~-Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPg 308 (564)
.++|+.+++.|++.+-+-+=+-+... +..++ |=-|.+++.+.+..+++.|+++.+|+++.-=.
T Consensus 43 ~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~viNh~~ 114 (545)
T KOG0471|consen 43 TSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLVINHRS 114 (545)
T ss_pred hhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEeeccccCC
Confidence 57899999999999988774444333 56666 44588999999999999999999999887643
No 426
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=25.33 E-value=5.5e+02 Score=24.21 Aligned_cols=64 Identities=13% Similarity=0.121 Sum_probs=40.4
Q ss_pred HHHHHHHHH----cC-CCeEEEccCCCCHHHHHhcCC-CCCHHHHHHHHHHHHHcC-CcEE-EEEecCCCCCCHHHH
Q 008466 246 GPHLRQMLS----YG-CTRLEIGVQSTYEDVARDTNR-GHTVAAVADCFCLAKDAG-FKVV-AHMMPDLPNVGVERD 314 (564)
Q Consensus 246 ~e~L~~L~~----~G-~~rvsiGvQS~~d~vL~~i~R-ght~~~~~~ai~~lr~~G-~~v~-~~lI~GLPget~e~~ 314 (564)
.+.++.+.+ .| ..+|.|-|.+.. .++| |.+.+++.+.++.+++.+ +++. .|..+|-...+.+..
T Consensus 90 ~~~l~~l~~~~~~~~~~~~v~lrv~~g~-----~~~R~G~~~~e~~~~~~~i~~~~~l~l~Gl~~H~~~~~~~~~~~ 161 (211)
T cd06808 90 LEELEKLEEAALKAGPPARVLLRIDTGD-----ENGKFGVRPEELKALLERAKELPHLRLVGLHTHFGSADEDYSPF 161 (211)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEcCCC-----CCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCHHHH
Confidence 445554443 33 245555555543 5677 889999999999998875 7754 577777655444333
No 427
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=25.28 E-value=6.5e+02 Score=25.24 Aligned_cols=78 Identities=12% Similarity=0.132 Sum_probs=44.6
Q ss_pred HHHHHHHHcCCCeEEEccCC-----CCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHH
Q 008466 247 PHLRQMLSYGCTRLEIGVQS-----TYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREF 321 (564)
Q Consensus 247 e~L~~L~~~G~~rvsiGvQS-----~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~ 321 (564)
..++..+..|++.|.++--. .+++..+ ..++.+.+..+.+++.|+.+....+.+-.-.|..+.++.++
T Consensus 98 ~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~A~~~Gv~l~lE~~~~~~~~t~~~~~~li~-- 170 (279)
T TIGR00542 98 KAIQLARDLGIRTIQLAGYDVYYEEHDEETRR-----RFREGLKEAVELAARAQVTLAVEIMDTPFMSSISKWLKWDH-- 170 (279)
T ss_pred HHHHHHHHhCCCEEEecCcccccCcCCHHHHH-----HHHHHHHHHHHHHHHcCCEEEEeeCCCchhcCHHHHHHHHH--
Confidence 45666777888888775311 0111111 22456667778888899998887664433345554443333
Q ss_pred hcCCCCCCCeEEEe
Q 008466 322 FESPLFRADGLKIY 335 (564)
Q Consensus 322 ~~~~~l~pd~i~iy 335 (564)
.++.+++.+.
T Consensus 171 ----~v~~~~v~~~ 180 (279)
T TIGR00542 171 ----YLNSPWFTLY 180 (279)
T ss_pred ----HcCCCceEEE
Confidence 2344566664
No 428
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=25.04 E-value=5.9e+02 Score=28.66 Aligned_cols=68 Identities=9% Similarity=0.088 Sum_probs=45.9
Q ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCC-CCHHHHHHHHHcCCCeE
Q 008466 182 VEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDY-CLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 182 ve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~-i~~e~L~~L~~~G~~rv 260 (564)
+..|..-+|.-.+.+....++++.|++.++ ..+.|.+-++-+. +.....-...++|++.|
T Consensus 169 ad~I~IkDtaGll~P~~~~~LV~~Lk~~~~-------------------~~ipI~~H~Hnt~GlA~An~laAieAGad~v 229 (499)
T PRK12330 169 ADSICIKDMAALLKPQPAYDIVKGIKEACG-------------------EDTRINLHCHSTTGVTLVSLMKAIEAGVDVV 229 (499)
T ss_pred CCEEEeCCCccCCCHHHHHHHHHHHHHhCC-------------------CCCeEEEEeCCCCCcHHHHHHHHHHcCCCEE
Confidence 566777788888889999999999887663 1244566664431 22333334457899999
Q ss_pred EEccCCCC
Q 008466 261 EIGVQSTY 268 (564)
Q Consensus 261 siGvQS~~ 268 (564)
...+-++.
T Consensus 230 Dtai~Glg 237 (499)
T PRK12330 230 DTAISSMS 237 (499)
T ss_pred Eeeccccc
Confidence 88887764
No 429
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=24.97 E-value=1.8e+02 Score=33.60 Aligned_cols=74 Identities=20% Similarity=0.233 Sum_probs=52.1
Q ss_pred EEEEEEe-eCC------CCCHHHHHHHHHcCCCeEEEccCCC--------CHHHH--HhcCCCCCHHHHHHHHHHHHHcC
Q 008466 233 IGMTIET-RPD------YCLGPHLRQMLSYGCTRLEIGVQST--------YEDVA--RDTNRGHTVAAVADCFCLAKDAG 295 (564)
Q Consensus 233 ~eitiEt-rPd------~i~~e~L~~L~~~G~~rvsiGvQS~--------~d~vL--~~i~Rght~~~~~~ai~~lr~~G 295 (564)
-|+-+.+ +|| .+..++|..|+++|+|.|+|=+=+- ++-++ .--.|=-|.+++..-|..++++|
T Consensus 148 YElHvGs~~~~~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~G 227 (628)
T COG0296 148 YELHVGSFTPDRFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAG 227 (628)
T ss_pred EEEEeeeccCCCCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcC
Confidence 3566665 441 1257899999999999999732111 11111 12345568999999999999999
Q ss_pred CcEEEEEecCC
Q 008466 296 FKVVAHMMPDL 306 (564)
Q Consensus 296 ~~v~~~lI~GL 306 (564)
|.|+.|.++|-
T Consensus 228 IgViLD~V~~H 238 (628)
T COG0296 228 IGVILDWVPNH 238 (628)
T ss_pred CEEEEEecCCc
Confidence 99999999883
No 430
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=24.76 E-value=4.6e+02 Score=27.50 Aligned_cols=94 Identities=18% Similarity=0.092 Sum_probs=51.7
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCC----HHHHHhcCC-C-----CCHHHHHHHHHHHHHcCCcEEEEEecCCC----CCC
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTY----EDVARDTNR-G-----HTVAAVADCFCLAKDAGFKVVAHMMPDLP----NVG 310 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~----d~vL~~i~R-g-----ht~~~~~~ai~~lr~~G~~v~~~lI~GLP----get 310 (564)
+.+++..|+++|++.+.+..+-.. ++.++.... + .+.+++...-+.+++.|..+.+++.+... |-.
T Consensus 63 s~~Ea~~~~~~G~~~ili~~~~~~~~~~~~~~~~~~~~~i~~~vDs~~~l~~l~~~a~~~~~~~~V~l~vd~G~~R~Gv~ 142 (358)
T cd06819 63 KLSEAEVMAAAGIRDILITNEVVGPAKIARLAALARRAPLIVCVDHPDNVRALAAAAVEAGVRLDVLVEIDVGQGRCGVP 142 (358)
T ss_pred cHHHHHHHHHCCCCeEEEECCcCCHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHhcCCceEEEEEECCCCCcCCCC
Confidence 457888889999988888754432 222232222 2 24555555556666777666666554421 222
Q ss_pred -HHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCC
Q 008466 311 -VERDLESFREFFESPLFRADGLKIYPTLVIRGT 343 (564)
Q Consensus 311 -~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT 343 (564)
.++..+.++.+.+. +++.+..+....|+
T Consensus 143 ~~~~~~~l~~~i~~~-----~~l~l~Gi~~y~G~ 171 (358)
T cd06819 143 PGEAALALARTIAAL-----PGLRFAGLQAYHGH 171 (358)
T ss_pred ChHHHHHHHHHHHhC-----CCceEeEEEeeCch
Confidence 34456666665432 34555555555554
No 431
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=24.51 E-value=4.4e+02 Score=25.85 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=16.2
Q ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHHhc
Q 008466 182 VEFILMGGTFMSLPADYRDYFIRNLHDALS 211 (564)
Q Consensus 182 ve~I~~GGTpt~l~~~~l~~ll~~l~~~~~ 211 (564)
+..|..-+|.-.+.|.....+++.+++.++
T Consensus 151 ~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~ 180 (237)
T PF00682_consen 151 ADIIYLADTVGIMTPEDVAELVRALREALP 180 (237)
T ss_dssp -SEEEEEETTS-S-HHHHHHHHHHHHHHST
T ss_pred CeEEEeeCccCCcCHHHHHHHHHHHHHhcc
Confidence 444555556666666666666666666554
No 432
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=24.36 E-value=1.1e+02 Score=27.23 Aligned_cols=27 Identities=11% Similarity=0.166 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEecC
Q 008466 278 GHTVAAVADCFCLAKDAGFKVVAHMMPD 305 (564)
Q Consensus 278 ght~~~~~~ai~~lr~~G~~v~~~lI~G 305 (564)
.++.+.+.+.++.+++.|.. ..-+|+|
T Consensus 61 ~~~~~~~~~~~~~L~~~~~~-~i~i~~G 87 (122)
T cd02071 61 GGHMTLFPEVIELLRELGAG-DILVVGG 87 (122)
T ss_pred hhhHHHHHHHHHHHHhcCCC-CCEEEEE
Confidence 34566777788888888876 3445555
No 433
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=24.25 E-value=7.5e+02 Score=26.03 Aligned_cols=83 Identities=12% Similarity=0.024 Sum_probs=47.8
Q ss_pred EEEEEeeCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCC--CCHHHHHHHHHHHHHcCCc-EEEEEecCCCCC-
Q 008466 234 GMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRG--HTVAAVADCFCLAKDAGFK-VVAHMMPDLPNV- 309 (564)
Q Consensus 234 eitiEtrPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rg--ht~~~~~~ai~~lr~~G~~-v~~~lI~GLPge- 309 (564)
-++....|..++++..+.++.+--..+.+++||. +.|| .+.+...+-.+.+.+.|+. ...+..-..+|.
T Consensus 225 ~vsh~nh~~Ei~~~~~~ai~~L~~aGi~v~~qtv-------Ll~gvnD~~~~l~~L~~~l~~~gV~pyyl~~~~~~~g~~ 297 (331)
T TIGR00238 225 LVTHINHCNEITEEFAEAMKKLRTVNVTLLNQSV-------LLRGVNDRAQILAKLSIALFKVGIIPYYLHYLDKVQGAK 297 (331)
T ss_pred EEccCCChHhCCHHHHHHHHHHHHcCCEEEeecc-------eECCcCCCHHHHHHHHHHHhhcCeecCeecCcCCCCCcc
Confidence 3444445555666655555443333356888886 4554 3566777788889888986 344444433332
Q ss_pred ----CHHHHHHHHHHHhc
Q 008466 310 ----GVERDLESFREFFE 323 (564)
Q Consensus 310 ----t~e~~~~t~~~~~~ 323 (564)
+.++..+.++++..
T Consensus 298 ~f~~~~~~~~~i~~~l~~ 315 (331)
T TIGR00238 298 HFLVPDAEAAQIVKELAR 315 (331)
T ss_pred cccCCHHHHHHHHHHHHh
Confidence 34555555555543
No 434
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=24.18 E-value=7.4e+02 Score=24.89 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=14.7
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHHh
Q 008466 183 EFILMGGTFMSLPADYRDYFIRNLHDAL 210 (564)
Q Consensus 183 e~I~~GGTpt~l~~~~l~~ll~~l~~~~ 210 (564)
..|...+|.-.+.|+...++++.+++.+
T Consensus 156 d~i~l~DT~G~~~P~~v~~lv~~l~~~~ 183 (263)
T cd07943 156 DCVYVTDSAGAMLPDDVRERVRALREAL 183 (263)
T ss_pred CEEEEcCCCCCcCHHHHHHHHHHHHHhC
Confidence 3344455555555555555555555443
No 435
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=23.78 E-value=5.7e+02 Score=27.04 Aligned_cols=28 Identities=21% Similarity=0.198 Sum_probs=18.9
Q ss_pred cchHHHHHHhhccccCCcccceeeEEecc
Q 008466 397 KGNLRELALARMDDLGLKCRDVRTREAGI 425 (564)
Q Consensus 397 ~~~~~~~a~~~~~~~g~~c~~ir~re~~~ 425 (564)
.+.+.++++.-.++.|..-++|- .|.|.
T Consensus 285 ~s~~~~~~~~~~~~~~~~~~~i~-~~~~~ 312 (333)
T TIGR03217 285 YSSFLLHAERAAAKYGVDARDIL-VELGR 312 (333)
T ss_pred hhhHHHHHHHHHHHhCCCHHHHH-HHHhc
Confidence 34566778777888888877775 34443
No 436
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=23.53 E-value=6.5e+02 Score=23.99 Aligned_cols=68 Identities=18% Similarity=0.139 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCC
Q 008466 247 PHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPL 326 (564)
Q Consensus 247 e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~ 326 (564)
..++.+.++|.+.|.+-..+.. ..+.+.++.+++.|+++..+++- |.+..++ +..+. .
T Consensus 67 ~~~~~~~~~Gad~i~vh~~~~~-------------~~~~~~i~~~~~~g~~~~~~~~~--~~t~~~~----~~~~~---~ 124 (206)
T TIGR03128 67 YEAEQAFAAGADIVTVLGVADD-------------ATIKGAVKAAKKHGKEVQVDLIN--VKDKVKR----AKELK---E 124 (206)
T ss_pred HHHHHHHHcCCCEEEEeccCCH-------------HHHHHHHHHHHHcCCEEEEEecC--CCChHHH----HHHHH---H
Confidence 3689999999999998776531 34566778888999987765433 3333333 33333 3
Q ss_pred CCCCeEEEee
Q 008466 327 FRADGLKIYP 336 (564)
Q Consensus 327 l~pd~i~iy~ 336 (564)
+++|.++++|
T Consensus 125 ~g~d~v~~~p 134 (206)
T TIGR03128 125 LGADYIGVHT 134 (206)
T ss_pred cCCCEEEEcC
Confidence 5789887743
No 437
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=23.44 E-value=1.6e+03 Score=28.48 Aligned_cols=167 Identities=15% Similarity=0.127 Sum_probs=97.2
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEE-EEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEE
Q 008466 160 NPYVQARSRIDQLKRLGHSVDKVEFI-LMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIE 238 (564)
Q Consensus 160 ~~y~~~l~r~~~l~~~g~~~~kve~I-~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiE 238 (564)
..|..++....+..+.| ...| ++.|.+..-..+.+.+++..|..... .-.+.++
T Consensus 381 ~d~~~al~~A~~qve~G-----A~iIDVn~g~~~id~~eem~rvv~~i~~~~~------------------~~~vPls-- 435 (1229)
T PRK09490 381 EDYDEALDVARQQVENG-----AQIIDINMDEGMLDSEAAMVRFLNLIASEPD------------------IARVPIM-- 435 (1229)
T ss_pred CCHHHHHHHHHHHHHCC-----CCEEEECCCCCCCCHHHHHHHHHHHHHhhhc------------------cCCceEE--
Confidence 56677777766777777 5566 66666665566777788777653211 0013344
Q ss_pred eeCCCCCHHHHHHHHHc--CCCeE-EEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEe--cCCCCCCHHH
Q 008466 239 TRPDYCLGPHLRQMLSY--GCTRL-EIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMM--PDLPNVGVER 313 (564)
Q Consensus 239 trPd~i~~e~L~~L~~~--G~~rv-siGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI--~GLPget~e~ 313 (564)
.|+-..+.++.-.+. |..-| ||..... -+.+.+.+.+++++|-.+++--| -|.|. |.++
T Consensus 436 --IDS~~~~ViEaaLk~~~G~~IINSIs~~~~-------------~~~~~~~~~l~~kyga~vV~m~~de~G~~~-t~e~ 499 (1229)
T PRK09490 436 --IDSSKWEVIEAGLKCIQGKGIVNSISLKEG-------------EEKFIEHARLVRRYGAAVVVMAFDEQGQAD-TRER 499 (1229)
T ss_pred --EeCCcHHHHHHHHhhcCCCCEEEeCCCCCC-------------CccHHHHHHHHHHhCCCEEEEecCCCCCCC-CHHH
Confidence 455566788777776 64322 1111111 13455677889999999775444 57774 5555
Q ss_pred HHHHHHHHhcC----CCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 008466 314 DLESFREFFES----PLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVP 374 (564)
Q Consensus 314 ~~~t~~~~~~~----~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp 374 (564)
-++-.+.+.+. ..+.++.|-+=|+...=+|...+.-. ..-+.++.+..+.+.+|
T Consensus 500 r~~ia~r~~~~~~~~~Gi~~~dIi~Dplv~~v~t~~ee~~~-------~~~~~leair~ik~~~P 557 (1229)
T PRK09490 500 KIEICKRAYDILTEEVGFPPEDIIFDPNIFAVATGIEEHNN-------YAVDFIEATRWIKQNLP 557 (1229)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHEEEcCCcceeecChHHHHH-------HHHHHHHHHHHHHHHCC
Confidence 45544444332 25677888888877666776543211 13345566666667775
No 438
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=23.15 E-value=7.1e+02 Score=24.84 Aligned_cols=101 Identities=19% Similarity=0.226 Sum_probs=64.9
Q ss_pred HHHHHHcCCCCCcEEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCC---CchhhHHHhhhcccCCcccEEEEEEe------
Q 008466 169 IDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGH---TSANVEEAVTYSEHGATKCIGMTIET------ 239 (564)
Q Consensus 169 ~~~l~~~g~~~~kve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~---~~~~l~e~~~~~~~~~~~~~eitiEt------ 239 (564)
...|.+.| ++.|-+.+|+-..|...+++|++.++. -+.. -..++||++.....+. +.++-|+..
T Consensus 91 Vd~L~~~G-----a~IIA~DaT~R~RP~~~~~~~i~~~k~-~~~l~MAD~St~ee~l~a~~~G~-D~IGTTLsGYT~~~~ 163 (229)
T COG3010 91 VDALAEAG-----ADIIAFDATDRPRPDGDLEELIARIKY-PGQLAMADCSTFEEGLNAHKLGF-DIIGTTLSGYTGYTE 163 (229)
T ss_pred HHHHHHCC-----CcEEEeecccCCCCcchHHHHHHHhhc-CCcEEEeccCCHHHHHHHHHcCC-cEEecccccccCCCC
Confidence 44566666 677789999999998888999988442 1111 1145777777666554 456656552
Q ss_pred eCCCCCHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHH
Q 008466 240 RPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFC 289 (564)
Q Consensus 240 rPd~i~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~ 289 (564)
.|+.=+-+.++.+.++|+.-|-= +|-||.++..++++
T Consensus 164 ~~~~pDf~lvk~l~~~~~~vIAE-------------Gr~~tP~~Ak~a~~ 200 (229)
T COG3010 164 KPTEPDFQLVKQLSDAGCRVIAE-------------GRYNTPEQAKKAIE 200 (229)
T ss_pred CCCCCcHHHHHHHHhCCCeEEee-------------CCCCCHHHHHHHHH
Confidence 23333456677777788765532 57788887776664
No 439
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=23.05 E-value=6.1e+02 Score=28.29 Aligned_cols=87 Identities=8% Similarity=0.119 Sum_probs=52.4
Q ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCC-CCHHHHHHHHHcCCCeE
Q 008466 182 VEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDY-CLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 182 ve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~-i~~e~L~~L~~~G~~rv 260 (564)
+..|..-+|.-.+.+....++++.+++.++ +.|.+-++-+. +.....-...++|+++|
T Consensus 167 ad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~---------------------vpI~~H~Hnt~GlA~AN~laAieaGad~v 225 (467)
T PRK14041 167 VDSICIKDMAGLLTPKRAYELVKALKKKFG---------------------VPVEVHSHCTTGLASLAYLAAVEAGADMF 225 (467)
T ss_pred CCEEEECCccCCcCHHHHHHHHHHHHHhcC---------------------CceEEEecCCCCcHHHHHHHHHHhCCCEE
Confidence 556777777778888999999998887654 23555554431 22222333347899999
Q ss_pred EEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCc
Q 008466 261 EIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFK 297 (564)
Q Consensus 261 siGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~ 297 (564)
...+-.+. .+.+--...+.+..++..|+.
T Consensus 226 D~sv~~~g--------~gagN~atE~lv~~L~~~g~~ 254 (467)
T PRK14041 226 DTAISPFS--------MGTSQPPFESMYYAFRENGKE 254 (467)
T ss_pred EeeccccC--------CCCCChhHHHHHHHHHhcCCC
Confidence 88877543 333333344444444555554
No 440
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=22.92 E-value=8.1e+02 Score=26.89 Aligned_cols=93 Identities=12% Similarity=0.158 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCceEEeeeecCCCh
Q 008466 309 VGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPM 388 (564)
Q Consensus 309 et~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~~~ee~~~~~~~~~~~lp~~iri~Ri~rdip~ 388 (564)
.+.++..+.++.+. +.+.+.+.+.-+.-.||- +.++..+.+..+.+.=|..+.++.+. ..|.
T Consensus 184 ~~~~~~~~ai~~l~---~~G~~~v~~dli~GlPgq--------------t~e~~~~~l~~~~~l~~~~i~~y~l~-~~p~ 245 (453)
T PRK09249 184 QPFEFTFALVEAAR---ELGFTSINIDLIYGLPKQ--------------TPESFARTLEKVLELRPDRLAVFNYA-HVPW 245 (453)
T ss_pred CCHHHHHHHHHHHH---HcCCCcEEEEEEccCCCC--------------CHHHHHHHHHHHHhcCCCEEEEccCc-cchh
Confidence 46666777777665 345555665544444442 45666666777777666778888764 1121
Q ss_pred h-HHHhC---------CCcchHHHHHHhhccccCCccccee
Q 008466 389 P-LVTSG---------VEKGNLRELALARMDDLGLKCRDVR 419 (564)
Q Consensus 389 ~-l~~~G---------~~~~~~~~~a~~~~~~~g~~c~~ir 419 (564)
. ..... -....+-+++.+.+...|+.-..+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ye~s 286 (453)
T PRK09249 246 LFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQYIGMD 286 (453)
T ss_pred hhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCEEEecc
Confidence 1 00111 1122345667777888886544443
No 441
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=22.88 E-value=8.1e+02 Score=24.87 Aligned_cols=128 Identities=15% Similarity=0.152 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEEEEcCC---CCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEE
Q 008466 161 PYVQARSRIDQLKRLGHSVDKVEFILMGGT---FMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTI 237 (564)
Q Consensus 161 ~y~~~l~r~~~l~~~g~~~~kve~I~~GGT---pt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eiti 237 (564)
.+.....-...+...| +..++.+|| +..|+.+...++++...+..+ ..+.+-+
T Consensus 20 d~~~~~~~i~~l~~~G-----v~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~-------------------~~~~vi~ 75 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAG-----VDGLVVLGSTGEFYSLTDEERKELLEIVVEAAA-------------------GRVPVIA 75 (289)
T ss_dssp -HHHHHHHHHHHHHTT-----SSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHT-------------------TSSEEEE
T ss_pred CHHHHHHHHHHHHHcC-----CCEEEECCCCcccccCCHHHHHHHHHHHHHHcc-------------------CceEEEe
Q ss_pred EeeCCCC--CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHc-CCcEEEEEecCCCCCCHHHH
Q 008466 238 ETRPDYC--LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDA-GFKVVAHMMPDLPNVGVERD 314 (564)
Q Consensus 238 EtrPd~i--~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~-G~~v~~~lI~GLPget~e~~ 314 (564)
.+-..+. .-+..+...++|++.+.+..=... ..|.+++.+-++.+.++ ++++..+-.++..|-+...
T Consensus 76 gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~~---------~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~- 145 (289)
T PF00701_consen 76 GVGANSTEEAIELARHAQDAGADAVLVIPPYYF---------KPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSP- 145 (289)
T ss_dssp EEESSSHHHHHHHHHHHHHTT-SEEEEEESTSS---------SCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHH-
T ss_pred cCcchhHHHHHHHHHHHhhcCceEEEEeccccc---------cchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCH-
Q ss_pred HHHHHHHhc
Q 008466 315 LESFREFFE 323 (564)
Q Consensus 315 ~~t~~~~~~ 323 (564)
+++.++.+
T Consensus 146 -~~l~~L~~ 153 (289)
T PF00701_consen 146 -ETLARLAK 153 (289)
T ss_dssp -HHHHHHHT
T ss_pred -HHHHHHhc
No 442
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=22.66 E-value=4.4e+02 Score=27.95 Aligned_cols=26 Identities=19% Similarity=0.074 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCeEEEee
Q 008466 308 NVGVERDLESFREFFESPLFRADGLKIYP 336 (564)
Q Consensus 308 get~e~~~~t~~~~~~~~~l~pd~i~iy~ 336 (564)
|.+.++..+.++.+. +.++|.|.+..
T Consensus 231 g~~~ee~~~i~~~L~---~~GvD~I~Vs~ 256 (353)
T cd04735 231 GIRMEDTLALVDKLA---DKGLDYLHISL 256 (353)
T ss_pred CCCHHHHHHHHHHHH---HcCCCEEEecc
Confidence 567777777666664 46789988865
No 443
>cd03681 MM_CoA_mutase_MeaA Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, MeaA-like subfamily; contains various methylmalonyl coenzyme A (CoA) mutase (MCM)-like proteins similar to the Streptomyces cinnamonensis MeaA, Methylobacterium extorquens MeaA and Streptomyces collinus B12-dependent mutase. Members of this subfamily contain an N-terminal MCM domain and a C-terminal coenzyme B12 binding domain. S. cinnamonensis MeaA is a putative B12-dependent mutase which provides methylmalonyl-CoA precursors for the biosynthesis of the monensin polyketide via an unknown pathway. S. collinus B12-dependent mutase may be involved in a pathway for acetate assimilation.
Probab=22.56 E-value=6.6e+02 Score=27.53 Aligned_cols=127 Identities=18% Similarity=0.196 Sum_probs=74.4
Q ss_pred HHHHHHHHHcCCCeEEEc--------cCCCCHHHHHhcCC-CCCHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCHHHHH
Q 008466 246 GPHLRQMLSYGCTRLEIG--------VQSTYEDVARDTNR-GHTVAAVADCFCLAKDAGFK-VVAHMMPDLPNVGVERDL 315 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiG--------vQS~~d~vL~~i~R-ght~~~~~~ai~~lr~~G~~-v~~~lI~GLPget~e~~~ 315 (564)
.+.+..+.+.|.+.+++- ..|-++.....++| |.++..+.+.-.++....+. +.++|-.|-| ...++
T Consensus 17 N~~~~~~L~~G~t~ls~afD~~t~~G~D~d~p~~~gevG~~Gv~i~s~~Dm~~L~~gI~L~~v~~s~t~~a~---a~~ll 93 (407)
T cd03681 17 NELYRKNLAKGQTGLSVAFDLPTQTGYDSDHILAKGEVGKVGVPINHLGDMRILFNQIPLEQMNTSMTINAT---AMWLL 93 (407)
T ss_pred HHHHHHHHHCCCCeeEEeeccccccCCCCCcccccccccCcCCCcCCHHHHHHHHcCCCcccceeEEEeCCc---HHHHH
Confidence 355666677899999884 45777777778888 66543333333333332222 5566665543 34455
Q ss_pred HHHHHHhcCCCCCCCeEEEeeeeecCCChhHHHHHcCCCCCC---CHHHHHHHHHHHHHhCCCceEE
Q 008466 316 ESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNY---PPEQLVDIVARILAMVPPWTRV 379 (564)
Q Consensus 316 ~t~~~~~~~~~l~pd~i~iy~l~v~~GT~L~~~~~~G~~~~~---~~ee~~~~~~~~~~~lp~~iri 379 (564)
..+-.+.+. -+.+.=++..+ +-.-+|.+...+|.|..+ +.....+++......+|.|-.+
T Consensus 94 a~~~a~ae~--~g~~~~~l~Gt--iq~D~lke~~~~g~~~~p~~~s~r~~~d~~~~~~~~~P~~~~i 156 (407)
T cd03681 94 SLYVAVAEE--QGADVTALQGT--TQNDIIKEYLSRGTYIFPPAPSLRLIVDMIEYCLKNIPKWNPM 156 (407)
T ss_pred HHHHHHHHH--cCCCHHHccee--eccchHHHHHhcCCcCCCCchHHHHHHHHHHHHHHhCCCCeEE
Confidence 555555542 22332222211 123478888899998633 3447788888888999988443
No 444
>PRK14705 glycogen branching enzyme; Provisional
Probab=22.21 E-value=1.7e+02 Score=36.65 Aligned_cols=60 Identities=13% Similarity=-0.005 Sum_probs=44.2
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCH---------HHHHhcC-CCCCHHHHHHHHHHHHHcCCcEEEEEecC
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYE---------DVARDTN-RGHTVAAVADCFCLAKDAGFKVVAHMMPD 305 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d---------~vL~~i~-Rght~~~~~~ai~~lr~~G~~v~~~lI~G 305 (564)
++.|+.++++|+|.|+|-+=+-++ .-+-.++ |--|.+++...++.++++||.|++|+.++
T Consensus 769 ~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~n 838 (1224)
T PRK14705 769 KELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPA 838 (1224)
T ss_pred HHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 355799999999999987632111 1112222 33478999999999999999999998876
No 445
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=22.18 E-value=2.5e+02 Score=32.70 Aligned_cols=68 Identities=12% Similarity=0.126 Sum_probs=51.7
Q ss_pred CHHHHHHHHHcCCCeEEEcc--CC---------CC-H---HHHH-hcC-CCCCHHHHHHHHHHHHHcCCcEEEEEecCCC
Q 008466 245 LGPHLRQMLSYGCTRLEIGV--QS---------TY-E---DVAR-DTN-RGHTVAAVADCFCLAKDAGFKVVAHMMPDLP 307 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGv--QS---------~~-d---~vL~-~i~-Rght~~~~~~ai~~lr~~G~~v~~~lI~GLP 307 (564)
++...+.|++.|++-|-+++ +| .. | ++.+ .+. +--|.+|+.+.++.+++.|++|+.||+++--
T Consensus 76 ~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHT 155 (688)
T TIGR02455 76 DDALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDIIPAHT 155 (688)
T ss_pred ChHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 47788999999999998886 34 11 1 2222 222 2348899999999999999999999999987
Q ss_pred CCCHH
Q 008466 308 NVGVE 312 (564)
Q Consensus 308 get~e 312 (564)
+....
T Consensus 156 s~ghd 160 (688)
T TIGR02455 156 GKGAD 160 (688)
T ss_pred CCCcc
Confidence 77765
No 446
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=22.16 E-value=5.9e+02 Score=28.45 Aligned_cols=90 Identities=12% Similarity=0.196 Sum_probs=54.9
Q ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCC-CCHHHHHHHHHcCCCeE
Q 008466 182 VEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDY-CLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 182 ve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~-i~~e~L~~L~~~G~~rv 260 (564)
+..|..-+|.-.+.+....++++.+++..+ +.+.+-++-+. +.....-...++|++.|
T Consensus 177 ad~I~IkDtaG~l~P~~v~~Lv~alk~~~~---------------------~pi~~H~Hnt~GlA~An~laAieAGad~v 235 (468)
T PRK12581 177 ADSICIKDMAGILTPKAAKELVSGIKAMTN---------------------LPLIVHTHATSGISQMTYLAAVEAGADRI 235 (468)
T ss_pred CCEEEECCCCCCcCHHHHHHHHHHHHhccC---------------------CeEEEEeCCCCccHHHHHHHHHHcCCCEE
Confidence 567777888888899999999998876322 34555554332 22333334457899999
Q ss_pred EEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEE
Q 008466 261 EIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA 300 (564)
Q Consensus 261 siGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~ 300 (564)
...+-++.+ +.+-......+..++..|++...
T Consensus 236 D~ai~g~g~--------gagN~~tE~lv~~L~~~g~~tgi 267 (468)
T PRK12581 236 DTALSPFSE--------GTSQPATESMYLALKEAGYDITL 267 (468)
T ss_pred EeeccccCC--------CcCChhHHHHHHHHHhcCCCCCc
Confidence 988876544 32323333444445555666433
No 447
>PRK14706 glycogen branching enzyme; Provisional
Probab=22.11 E-value=1.7e+02 Score=33.89 Aligned_cols=60 Identities=13% Similarity=-0.012 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCCCeEEEccCCCC--------H-HHHHhcC-CCCCHHHHHHHHHHHHHcCCcEEEEEecC
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTY--------E-DVARDTN-RGHTVAAVADCFCLAKDAGFKVVAHMMPD 305 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~--------d-~vL~~i~-Rght~~~~~~ai~~lr~~G~~v~~~lI~G 305 (564)
++.++.++++|+|.|+|=+=.-+ + .-.-.+. |--|.+++...++.++++||.|++|+.++
T Consensus 171 ~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~n 240 (639)
T PRK14706 171 HRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPG 240 (639)
T ss_pred HHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 34457899999999998652111 0 0111222 33478999999999999999999998775
No 448
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=21.94 E-value=7e+02 Score=27.86 Aligned_cols=105 Identities=18% Similarity=0.230 Sum_probs=65.8
Q ss_pred HHHHHHHHcCCCCCcEEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCH
Q 008466 167 SRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLG 246 (564)
Q Consensus 167 ~r~~~l~~~g~~~~kve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~ 246 (564)
.+...|...| ++.|+..-+-- ....+.++++.|++.++. +.+-+ -+..|.
T Consensus 230 ~~a~~Lv~aG-----vd~i~~D~a~~--~~~~~~~~i~~ik~~~p~----------------------~~v~a-gnv~t~ 279 (479)
T PRK07807 230 AKARALLEAG-----VDVLVVDTAHG--HQEKMLEALRAVRALDPG----------------------VPIVA-GNVVTA 279 (479)
T ss_pred HHHHHHHHhC-----CCEEEEeccCC--ccHHHHHHHHHHHHHCCC----------------------CeEEe-eccCCH
Confidence 3444555555 55565433221 256777889999887752 11111 123578
Q ss_pred HHHHHHHHcCCCeEEEccCCCCHHHHHhc---CCCCCHHHHHHHHHHHHHcCCcEEEEE
Q 008466 247 PHLRQMLSYGCTRLEIGVQSTYEDVARDT---NRGHTVAAVADCFCLAKDAGFKVVAHM 302 (564)
Q Consensus 247 e~L~~L~~~G~~rvsiGvQS~~d~vL~~i---~Rght~~~~~~ai~~lr~~G~~v~~~l 302 (564)
+....|.++|++-|-+|+=+++==+++.. +++ ....+.++.+.+++.|.++++|=
T Consensus 280 ~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p-~~~av~~~~~~~~~~~~~via~g 337 (479)
T PRK07807 280 EGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRP-QFSAVLECAAAARELGAHVWADG 337 (479)
T ss_pred HHHHHHHHcCCCEEEECccCCcccccccccCCchh-HHHHHHHHHHHHHhcCCcEEecC
Confidence 89999999999999988888554444422 221 44666777777777788877653
No 449
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=21.89 E-value=4.4e+02 Score=28.96 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=70.2
Q ss_pred HHHHHHcCCCCCcEEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCHHH
Q 008466 169 IDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLGPH 248 (564)
Q Consensus 169 ~~~l~~~g~~~~kve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~e~ 248 (564)
...+...| ++.|+..-.- =+..++-++++.+++.++. +++-+ -+-+|.+.
T Consensus 256 l~ll~~aG-----vdvviLDSSq--GnS~~qiemik~iK~~yP~----------------------l~Via-GNVVT~~q 305 (503)
T KOG2550|consen 256 LDLLVQAG-----VDVVILDSSQ--GNSIYQLEMIKYIKETYPD----------------------LQIIA-GNVVTKEQ 305 (503)
T ss_pred HHHhhhcC-----CcEEEEecCC--CcchhHHHHHHHHHhhCCC----------------------ceeec-cceeeHHH
Confidence 33345555 5556542111 1346788899999998873 22221 12368899
Q ss_pred HHHHHHcCCCeEEEccCCCCHHHHH---hcCCCCCHHHHHHHHHHHHHcCCcEEEEE
Q 008466 249 LRQMLSYGCTRLEIGVQSTYEDVAR---DTNRGHTVAAVADCFCLAKDAGFKVVAHM 302 (564)
Q Consensus 249 L~~L~~~G~~rvsiGvQS~~d~vL~---~i~Rght~~~~~~ai~~lr~~G~~v~~~l 302 (564)
.+.|-.+|++-+-+|.=|++==+-+ .++|++- -.+.+..+.++..|+.+.+|=
T Consensus 306 a~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~-TAVy~va~~A~q~gvpviADG 361 (503)
T KOG2550|consen 306 AANLIAAGADGLRVGMGSGSICITQKVMACGRPQG-TAVYKVAEFANQFGVPCIADG 361 (503)
T ss_pred HHHHHHccCceeEeccccCceeeeceeeeccCCcc-cchhhHHHHHHhcCCceeecC
Confidence 9999999999988888887644333 5677763 468889999999999988874
No 450
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=21.86 E-value=1.2e+03 Score=26.68 Aligned_cols=87 Identities=7% Similarity=0.074 Sum_probs=52.8
Q ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCC-CCHHHHHHHHHcCCCeE
Q 008466 182 VEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDY-CLGPHLRQMLSYGCTRL 260 (564)
Q Consensus 182 ve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~-i~~e~L~~L~~~G~~rv 260 (564)
+..|..-+|.-.+.+.....+++.+++.++ +.|.+-++-+. +.-...-...++|+++|
T Consensus 168 ad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~---------------------~pi~~H~Hnt~Gla~An~laAv~aGad~v 226 (592)
T PRK09282 168 CDSICIKDMAGLLTPYAAYELVKALKEEVD---------------------LPVQLHSHCTSGLAPMTYLKAVEAGVDII 226 (592)
T ss_pred CCEEEECCcCCCcCHHHHHHHHHHHHHhCC---------------------CeEEEEEcCCCCcHHHHHHHHHHhCCCEE
Confidence 456767777777888888889998887654 23555554332 33333344457899999
Q ss_pred EEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCc
Q 008466 261 EIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFK 297 (564)
Q Consensus 261 siGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~ 297 (564)
.-.+-.+.+ +.+-......+..++..|+.
T Consensus 227 D~ai~g~g~--------~agn~~~e~vv~~L~~~g~~ 255 (592)
T PRK09282 227 DTAISPLAF--------GTSQPPTESMVAALKGTPYD 255 (592)
T ss_pred EeeccccCC--------CcCCHhHHHHHHHHHhCCCC
Confidence 988876543 33333344444444445554
No 451
>PRK09875 putative hydrolase; Provisional
Probab=21.44 E-value=6.1e+02 Score=26.35 Aligned_cols=13 Identities=15% Similarity=0.189 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHcC
Q 008466 283 AVADCFCLAKDAG 295 (564)
Q Consensus 283 ~~~~ai~~lr~~G 295 (564)
+..+++..+.+.|
T Consensus 221 ~r~~~i~~L~~~G 233 (292)
T PRK09875 221 KRIAMLHALRDRG 233 (292)
T ss_pred HHHHHHHHHHhcC
Confidence 4445555555555
No 452
>PLN02389 biotin synthase
Probab=21.16 E-value=6.8e+02 Score=27.04 Aligned_cols=101 Identities=9% Similarity=0.075 Sum_probs=57.5
Q ss_pred HHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHHHhcCCCC
Q 008466 248 HLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLF 327 (564)
Q Consensus 248 ~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~~~lI~GLPget~e~~~~t~~~~~~~~~l 327 (564)
.++.+.+.|++++.++. |+.. ..+.....+.+.+.++.+++.|+.++ .-.|+- +.+ .++.+. +.
T Consensus 124 ~a~~~~~~G~~~~~ivt-s~rg----~~~e~~~~e~i~eiir~ik~~~l~i~--~s~G~l--~~E----~l~~Lk---eA 187 (379)
T PLN02389 124 AAKRAKEAGSTRFCMGA-AWRD----TVGRKTNFNQILEYVKEIRGMGMEVC--CTLGML--EKE----QAAQLK---EA 187 (379)
T ss_pred HHHHHHHcCCCEEEEEe-cccC----CCCChhHHHHHHHHHHHHhcCCcEEE--ECCCCC--CHH----HHHHHH---Hc
Confidence 45566778999998853 1100 11222246889999999998777654 445542 322 344443 34
Q ss_pred CCCeEEEeeeeecCCCh-hHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 008466 328 RADGLKIYPTLVIRGTG-LYELWKTGRYRNYPPEQLVDIVARILAM 372 (564)
Q Consensus 328 ~pd~i~iy~l~v~~GT~-L~~~~~~G~~~~~~~ee~~~~~~~~~~~ 372 (564)
++|.+.+ .+ ..++ +|+.+. .+-+.++.++.+..+.+.
T Consensus 188 Gld~~~~---~L-eTs~~~y~~i~----~~~s~e~rl~ti~~a~~~ 225 (379)
T PLN02389 188 GLTAYNH---NL-DTSREYYPNVI----TTRSYDDRLETLEAVREA 225 (379)
T ss_pred CCCEEEe---ee-cCChHHhCCcC----CCCCHHHHHHHHHHHHHc
Confidence 5676543 33 3344 444332 234788888888777664
No 453
>TIGR03356 BGL beta-galactosidase.
Probab=20.80 E-value=1.9e+02 Score=31.71 Aligned_cols=91 Identities=16% Similarity=0.099 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCC-CC---HHHHHHHHHHHHHcCCcEEEEE-ecCCCCC--------C--
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRG-HT---VAAVADCFCLAKDAGFKVVAHM-MPDLPNV--------G-- 310 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rg-ht---~~~~~~ai~~lr~~G~~v~~~l-I~GLPge--------t-- 310 (564)
+|.+++|+++|++.+.++|. - .++... +.+ .+ ++-+.+.+..++++||.+.++| =+++|-. +
T Consensus 57 ~eDi~l~~~~G~~~~R~si~-W-sri~p~-g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~gGw~~~~ 133 (427)
T TIGR03356 57 EEDVALMKELGVDAYRFSIA-W-PRIFPE-GTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDRGGWLNRD 133 (427)
T ss_pred HHHHHHHHHcCCCeEEcccc-h-hhcccC-CCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhcCCCCChH
Confidence 68999999999998888882 1 222221 111 22 4667789999999999976554 2555642 2
Q ss_pred -HHHHHHHHHHHhcCCCCCCCeEEEeeeeecCC
Q 008466 311 -VERDLESFREFFESPLFRADGLKIYPTLVIRG 342 (564)
Q Consensus 311 -~e~~~~t~~~~~~~~~l~pd~i~iy~l~v~~G 342 (564)
.+.+.+-.+.+++ .++ |.++...+.=.|.
T Consensus 134 ~~~~f~~ya~~~~~--~~~-d~v~~w~t~NEp~ 163 (427)
T TIGR03356 134 TAEWFAEYAAVVAE--RLG-DRVKHWITLNEPW 163 (427)
T ss_pred HHHHHHHHHHHHHH--HhC-CcCCEEEEecCcc
Confidence 2445555555554 333 3444444333443
No 454
>COG2973 TrpR Trp operon repressor [Transcription]
Probab=20.78 E-value=1.7e+02 Score=25.51 Aligned_cols=49 Identities=12% Similarity=0.113 Sum_probs=34.4
Q ss_pred HHHHHHHHhhccCCCccCHHHHHHHHHHHhCCC--CCCCHHHHHHhCChhhHHHhhhHHh
Q 008466 37 AEIVNSMVELSRKNETVDLNAIKSAACRKYGLA--RAPKLVEMIAALPETDREALLPKLR 94 (564)
Q Consensus 37 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~--~~p~~~~i~~~~~~~~~~~l~~~l~ 94 (564)
-.||++||+++.. .++++.+++++ ..-+-++-+...+++.+++|...|.
T Consensus 50 v~Iv~eLL~ge~s---------QREi~~~LgvsiAtITRGSN~LK~~~~~~k~~L~~~l~ 100 (103)
T COG2973 50 VRIVEELLRGELS---------QREIAQKLGVSIATITRGSNSLKTADPEFKQWLEKVLL 100 (103)
T ss_pred HHHHHHHHhcccc---------HHHHHHHhCcchhhhccchhhhccCCHHHHHHHHHHhc
Confidence 3589999988742 45677888876 4556667777778888877655543
No 455
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=20.77 E-value=3.6e+02 Score=27.14 Aligned_cols=69 Identities=13% Similarity=0.269 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEe
Q 008466 160 NPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIET 239 (564)
Q Consensus 160 ~~y~~~l~r~~~l~~~g~~~~kve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEt 239 (564)
....+++.|...+.+.| .+.||.-|. .+.+.++++.+.+ ..+ +.+-.
T Consensus 152 ~~~deaI~R~~aY~eAG-----AD~ifi~~~---~~~~~i~~~~~~~--~~P-----------------------l~v~~ 198 (238)
T PF13714_consen 152 EGLDEAIERAKAYAEAG-----ADMIFIPGL---QSEEEIERIVKAV--DGP-----------------------LNVNP 198 (238)
T ss_dssp HHHHHHHHHHHHHHHTT------SEEEETTS---SSHHHHHHHHHHH--SSE-----------------------EEEET
T ss_pred CCHHHHHHHHHHHHHcC-----CCEEEeCCC---CCHHHHHHHHHhc--CCC-----------------------EEEEc
Q ss_pred eCCCCCHHHHHHHHHcCCCeEEEcc
Q 008466 240 RPDYCLGPHLRQMLSYGCTRLEIGV 264 (564)
Q Consensus 240 rPd~i~~e~L~~L~~~G~~rvsiGv 264 (564)
.|+. -.++.|.++|+.+|++|.
T Consensus 199 ~~~~---~~~~eL~~lGv~~v~~~~ 220 (238)
T PF13714_consen 199 GPGT---LSAEELAELGVKRVSYGN 220 (238)
T ss_dssp TSSS---S-HHHHHHTTESEEEETS
T ss_pred CCCC---CCHHHHHHCCCcEEEEcH
No 456
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=20.75 E-value=8.9e+02 Score=25.96 Aligned_cols=105 Identities=14% Similarity=0.252 Sum_probs=66.0
Q ss_pred HHHHHHHHcCCCCCcEEEEEEcCCCCCCCHHHHHHHHHHHHHHhcCCCchhhHHHhhhcccCCcccEEEEEEeeCCCCCH
Q 008466 167 SRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHGATKCIGMTIETRPDYCLG 246 (564)
Q Consensus 167 ~r~~~l~~~g~~~~kve~I~~GGTpt~l~~~~l~~ll~~l~~~~~~~~~~~l~e~~~~~~~~~~~~~eitiEtrPd~i~~ 246 (564)
.+...|.+.| ++.|+...+- . ..+++..+++.|++.++. +.+-. .| ..|.
T Consensus 111 er~~~L~~ag-----vD~ivID~a~-g-~s~~~~~~ik~ik~~~~~--------------------~~via-GN--V~T~ 160 (352)
T PF00478_consen 111 ERAEALVEAG-----VDVIVIDSAH-G-HSEHVIDMIKKIKKKFPD--------------------VPVIA-GN--VVTY 160 (352)
T ss_dssp HHHHHHHHTT------SEEEEE-SS-T-TSHHHHHHHHHHHHHSTT--------------------SEEEE-EE--E-SH
T ss_pred HHHHHHHHcC-----CCEEEccccC-c-cHHHHHHHHHHHHHhCCC--------------------ceEEe-cc--cCCH
Confidence 3444455555 5666554222 1 235566678888887762 11211 23 2578
Q ss_pred HHHHHHHHcCCCeEEEccCCCCHHH---HHhcCCCCCHHHHHHHHHHHHHcCCcEEEEE
Q 008466 247 PHLRQMLSYGCTRLEIGVQSTYEDV---ARDTNRGHTVAAVADCFCLAKDAGFKVVAHM 302 (564)
Q Consensus 247 e~L~~L~~~G~~rvsiGvQS~~d~v---L~~i~Rght~~~~~~ai~~lr~~G~~v~~~l 302 (564)
+-...|.++|++-|-+|+=+.+--+ ..-++++ ....+.++.+.+++++.+++.|=
T Consensus 161 e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~P-Q~tAv~~~a~~a~~~~v~iIADG 218 (352)
T PF00478_consen 161 EGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVP-QLTAVYECAEAARDYGVPIIADG 218 (352)
T ss_dssp HHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCT-HHHHHHHHHHHHHCTTSEEEEES
T ss_pred HHHHHHHHcCCCEEEEeccCCcccccccccccCCc-HHHHHHHHHHHhhhccCceeecC
Confidence 9999999999998888887666333 3344454 45788899999999999988883
No 457
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=20.70 E-value=5.4e+02 Score=27.35 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcEE---EEEecCCCCC
Q 008466 246 GPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVV---AHMMPDLPNV 309 (564)
Q Consensus 246 ~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v~---~~lI~GLPge 309 (564)
...++.|++.|+--=-||+||- .-..+-+.++...++...-+.|+++. .|++.+-|-.
T Consensus 207 ~nlI~~LkekG~pIDgiG~QsH------~~~~~~~~~~~~~a~~~~~k~Gl~i~VTELD~~~~~P~~ 267 (345)
T COG3693 207 LNLIEELKEKGAPIDGIGIQSH------FSGDGPSIEKMRAALLKFSKLGLPIYVTELDMSDYTPDS 267 (345)
T ss_pred HHHHHHHHHCCCCccceeeeee------ecCCCCCHHHHHHHHHHHhhcCCCceEEEeeeeccCCCC
Confidence 3578899999987778999997 33456788999999999888899844 5888853443
No 458
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=20.55 E-value=5.8e+02 Score=25.75 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=13.5
Q ss_pred CCCcccCCCCHHHHHHHHHHHHHHHHHhhc
Q 008466 18 RGGFQAHGLTEEEARVRAIAEIVNSMVELS 47 (564)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 47 (564)
|=|.|..+..-+ .....+|++.|.+.+
T Consensus 7 RDG~Q~~~~~~~---~~~k~~i~~~L~~~G 33 (268)
T cd07940 7 RDGEQTPGVSLT---PEEKLEIARQLDELG 33 (268)
T ss_pred CccccCCCCCCC---HHHHHHHHHHHHHcC
Confidence 446665553221 122255677777655
No 459
>PRK05588 histidinol-phosphatase; Provisional
Probab=20.04 E-value=8.7e+02 Score=24.15 Aligned_cols=46 Identities=11% Similarity=0.114 Sum_probs=36.8
Q ss_pred CHHHHHHHHHcCCCeEEEccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHcCCcE
Q 008466 245 LGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKV 298 (564)
Q Consensus 245 ~~e~L~~L~~~G~~rvsiGvQS~~d~vL~~i~Rght~~~~~~ai~~lr~~G~~v 298 (564)
....+..+++.|+..|.+|=.+-..+-+- ..+.++++.++++|+++
T Consensus 198 ~~~~l~~~~~~g~~~i~lgSDAH~~~~vg--------~~~~~~~~~l~~~G~~~ 243 (255)
T PRK05588 198 LVKIYKRFYELGGKYITLGSDAHNIEDIG--------NNFKFALEIAEYCNLKP 243 (255)
T ss_pred HHHHHHHHHHcCCcEEEEECCCCCHHHHH--------hhHHHHHHHHHHcCCEE
Confidence 35678999999998899998887666542 15678999999999983
Done!