Query 008467
Match_columns 564
No_of_seqs 522 out of 3580
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 12:31:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008467.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008467hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0273 Beta-transducin family 100.0 2E-103 4E-108 730.5 43.5 520 2-564 1-524 (524)
2 KOG0271 Notchless-like WD40 re 100.0 7.9E-57 1.7E-61 408.7 29.3 325 210-560 109-478 (480)
3 KOG0271 Notchless-like WD40 re 100.0 2.4E-49 5.2E-54 360.0 27.0 288 207-520 148-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 3.5E-47 7.5E-52 350.5 23.4 281 214-561 173-458 (459)
5 KOG0275 Conserved WD40 repeat- 100.0 3.3E-47 7.2E-52 339.0 14.7 478 3-561 4-507 (508)
6 KOG0286 G-protein beta subunit 100.0 6.6E-43 1.4E-47 307.9 33.0 285 209-520 48-343 (343)
7 KOG0279 G protein beta subunit 100.0 1.1E-41 2.3E-46 298.5 32.1 291 210-563 9-313 (315)
8 KOG0318 WD40 repeat stress pro 100.0 3.2E-40 7E-45 312.2 39.8 353 209-563 52-560 (603)
9 KOG0286 G-protein beta subunit 100.0 3.6E-40 7.8E-45 290.6 33.6 279 274-561 54-343 (343)
10 KOG0272 U4/U6 small nuclear ri 100.0 2.7E-42 5.8E-47 318.3 20.0 248 207-520 208-458 (459)
11 KOG0295 WD40 repeat-containing 100.0 3.9E-40 8.4E-45 298.6 28.1 297 209-563 101-406 (406)
12 KOG0296 Angio-associated migra 100.0 1.3E-38 2.8E-43 288.9 34.8 333 206-563 54-398 (399)
13 KOG0263 Transcription initiati 100.0 6.9E-40 1.5E-44 325.3 26.2 300 215-551 377-703 (707)
14 KOG0291 WD40-repeat-containing 100.0 2.3E-37 5.1E-42 304.3 40.1 330 210-563 139-550 (893)
15 KOG0645 WD40 repeat protein [G 100.0 2.1E-37 4.6E-42 270.5 33.3 289 209-563 7-311 (312)
16 KOG0284 Polyadenylation factor 100.0 7.3E-40 1.6E-44 300.8 18.6 278 275-561 96-378 (464)
17 KOG0319 WD40-repeat-containing 100.0 3.3E-38 7.1E-43 310.0 31.3 337 201-563 88-577 (775)
18 KOG0291 WD40-repeat-containing 100.0 1.5E-36 3.2E-41 298.7 38.7 327 210-563 259-612 (893)
19 KOG0285 Pleiotropic regulator 100.0 7E-38 1.5E-42 283.0 25.2 289 204-561 139-437 (460)
20 KOG0284 Polyadenylation factor 100.0 9E-39 2E-43 293.6 19.4 282 216-522 96-380 (464)
21 KOG0279 G protein beta subunit 100.0 5.2E-37 1.1E-41 269.1 26.8 245 209-522 56-313 (315)
22 KOG0315 G-protein beta subunit 100.0 2.6E-36 5.7E-41 260.4 30.2 278 229-534 11-300 (311)
23 KOG0318 WD40 repeat stress pro 100.0 3.1E-35 6.8E-40 278.5 39.7 353 187-563 157-602 (603)
24 KOG0319 WD40-repeat-containing 100.0 1.2E-36 2.5E-41 299.1 30.3 343 209-560 185-616 (775)
25 KOG0265 U5 snRNP-specific prot 100.0 5.6E-36 1.2E-40 265.3 30.9 278 272-559 44-334 (338)
26 KOG0263 Transcription initiati 100.0 1.3E-37 2.8E-42 309.2 22.8 270 275-563 378-649 (707)
27 PLN00181 protein SPA1-RELATED; 100.0 5.1E-35 1.1E-39 321.3 42.9 288 213-562 480-792 (793)
28 KOG0273 Beta-transducin family 100.0 1.5E-35 3.2E-40 277.2 32.0 277 217-522 236-523 (524)
29 cd00200 WD40 WD40 domain, foun 100.0 6.7E-35 1.5E-39 282.1 37.2 285 210-520 3-289 (289)
30 KOG0266 WD40 repeat-containing 100.0 2.2E-35 4.9E-40 301.6 34.4 289 209-562 151-453 (456)
31 KOG0282 mRNA splicing factor [ 100.0 1.5E-36 3.2E-41 285.1 22.2 296 199-520 197-503 (503)
32 KOG0265 U5 snRNP-specific prot 100.0 2E-35 4.2E-40 261.8 27.8 286 208-519 39-335 (338)
33 cd00200 WD40 WD40 domain, foun 100.0 8.2E-34 1.8E-38 274.4 38.2 280 273-561 7-289 (289)
34 KOG0281 Beta-TrCP (transducin 100.0 8E-37 1.7E-41 275.1 15.4 268 274-563 196-477 (499)
35 KOG0296 Angio-associated migra 100.0 1E-34 2.2E-39 263.6 29.1 286 209-522 99-398 (399)
36 KOG0293 WD40 repeat-containing 100.0 3.4E-35 7.4E-40 270.3 24.7 302 200-523 208-514 (519)
37 KOG0276 Vesicle coat complex C 100.0 9.2E-35 2E-39 280.3 25.4 285 211-559 8-295 (794)
38 KOG0316 Conserved WD40 repeat- 100.0 2.2E-34 4.8E-39 246.5 22.8 241 309-562 10-256 (307)
39 KOG1407 WD40 repeat protein [F 100.0 3.7E-33 8E-38 242.6 28.2 274 271-554 16-293 (313)
40 KOG0316 Conserved WD40 repeat- 100.0 2.9E-33 6.3E-38 239.6 26.3 285 203-556 4-293 (307)
41 KOG0285 Pleiotropic regulator 100.0 5.9E-34 1.3E-38 257.7 22.6 241 271-563 147-389 (460)
42 KOG0282 mRNA splicing factor [ 100.0 1.1E-34 2.3E-39 272.6 18.1 281 271-561 210-503 (503)
43 KOG0313 Microtubule binding pr 100.0 7.1E-33 1.5E-37 252.8 25.6 279 214-522 103-418 (423)
44 KOG0281 Beta-TrCP (transducin 100.0 3E-34 6.6E-39 258.5 16.4 273 215-526 196-481 (499)
45 KOG0645 WD40 repeat protein [G 100.0 4.6E-32 9.9E-37 237.1 29.2 235 274-561 13-259 (312)
46 KOG0772 Uncharacterized conser 100.0 1.4E-32 3.1E-37 259.8 27.9 304 201-560 152-484 (641)
47 KOG0315 G-protein beta subunit 100.0 8.2E-32 1.8E-36 232.6 29.9 265 288-563 11-288 (311)
48 KOG0973 Histone transcription 100.0 1.6E-32 3.4E-37 282.1 29.4 294 215-563 12-355 (942)
49 KOG0266 WD40 repeat-containing 100.0 5.6E-32 1.2E-36 276.6 31.3 240 275-563 159-409 (456)
50 KOG0295 WD40 repeat-containing 100.0 1E-32 2.2E-37 250.5 21.1 253 302-563 94-364 (406)
51 KOG1407 WD40 repeat protein [F 100.0 3.3E-31 7.2E-36 230.5 28.5 277 210-513 14-293 (313)
52 KOG0306 WD40-repeat-containing 100.0 2.2E-31 4.8E-36 262.2 30.8 285 210-523 367-665 (888)
53 KOG0299 U3 snoRNP-associated p 100.0 5.8E-32 1.3E-36 252.8 25.4 290 209-553 135-445 (479)
54 KOG0288 WD40 repeat protein Ti 100.0 7.3E-33 1.6E-37 255.3 18.6 290 203-519 162-458 (459)
55 KOG0292 Vesicle coat complex C 100.0 1.4E-31 3.1E-36 267.5 27.9 278 275-562 9-320 (1202)
56 KOG0292 Vesicle coat complex C 100.0 6.6E-31 1.4E-35 262.8 32.5 283 213-522 6-321 (1202)
57 KOG0313 Microtubule binding pr 100.0 2.7E-31 5.9E-36 242.5 26.5 274 274-561 104-416 (423)
58 KOG0293 WD40 repeat-containing 100.0 1.8E-31 3.9E-36 245.8 24.2 279 273-562 222-512 (519)
59 KOG0306 WD40-repeat-containing 100.0 1.3E-30 2.8E-35 256.8 31.8 327 217-561 66-662 (888)
60 KOG0643 Translation initiation 100.0 4.4E-30 9.5E-35 224.2 28.1 280 273-563 8-317 (327)
61 KOG0274 Cdc4 and related F-box 100.0 2.1E-30 4.5E-35 263.9 29.7 271 275-564 208-483 (537)
62 KOG0277 Peroxisomal targeting 100.0 7.5E-31 1.6E-35 227.4 21.6 275 279-561 12-307 (311)
63 KOG0277 Peroxisomal targeting 100.0 1.4E-30 3E-35 225.8 22.7 279 220-521 12-308 (311)
64 KOG0288 WD40 repeat protein Ti 100.0 3.2E-31 7E-36 244.5 18.3 275 273-560 173-458 (459)
65 KOG0274 Cdc4 and related F-box 100.0 1.1E-29 2.5E-34 258.5 29.8 285 211-530 202-490 (537)
66 KOG1063 RNA polymerase II elon 100.0 1.9E-29 4.2E-34 246.7 29.7 335 210-563 261-699 (764)
67 KOG0310 Conserved WD40 repeat- 100.0 1.1E-29 2.4E-34 239.5 26.6 275 274-560 25-306 (487)
68 PLN00181 protein SPA1-RELATED; 100.0 6.5E-29 1.4E-33 273.0 37.2 240 272-563 480-738 (793)
69 PTZ00421 coronin; Provisional 100.0 4.7E-29 1E-33 253.9 33.3 275 216-544 20-314 (493)
70 KOG0276 Vesicle coat complex C 100.0 3E-30 6.6E-35 249.2 22.7 245 310-562 7-256 (794)
71 KOG0305 Anaphase promoting com 100.0 1.9E-29 4.2E-34 247.2 28.8 272 279-562 181-460 (484)
72 PTZ00421 coronin; Provisional 100.0 6.1E-29 1.3E-33 253.1 33.6 244 277-563 22-290 (493)
73 KOG0283 WD40 repeat-containing 100.0 5.6E-30 1.2E-34 257.1 24.7 292 214-562 265-575 (712)
74 KOG0641 WD40 repeat protein [G 100.0 2E-27 4.3E-32 202.6 34.9 296 215-522 31-349 (350)
75 KOG0278 Serine/threonine kinas 100.0 8.2E-30 1.8E-34 220.3 17.9 282 210-561 8-295 (334)
76 KOG0643 Translation initiation 100.0 5.1E-29 1.1E-33 217.6 22.5 286 210-522 4-317 (327)
77 KOG1446 Histone H3 (Lys4) meth 100.0 2.7E-27 5.7E-32 212.5 33.4 277 213-560 11-300 (311)
78 KOG0641 WD40 repeat protein [G 100.0 2.9E-27 6.4E-32 201.5 31.8 278 275-562 32-348 (350)
79 KOG0640 mRNA cleavage stimulat 100.0 1.2E-28 2.6E-33 219.4 23.7 305 207-522 103-426 (430)
80 KOG0647 mRNA export protein (c 100.0 5.6E-28 1.2E-32 214.7 27.8 268 215-553 26-313 (347)
81 KOG0268 Sof1-like rRNA process 100.0 9.2E-30 2E-34 231.1 16.7 276 271-562 62-344 (433)
82 KOG1539 WD repeat protein [Gen 100.0 9.7E-27 2.1E-31 232.3 39.2 328 207-560 193-645 (910)
83 KOG0278 Serine/threonine kinas 100.0 1.3E-29 2.9E-34 219.0 16.0 247 209-526 52-301 (334)
84 KOG0305 Anaphase promoting com 100.0 9.3E-28 2E-32 235.4 28.8 276 220-524 181-463 (484)
85 KOG0289 mRNA splicing factor [ 100.0 1.2E-27 2.7E-32 222.1 28.0 281 217-562 220-505 (506)
86 KOG0301 Phospholipase A2-activ 100.0 6.8E-28 1.5E-32 236.0 27.3 278 210-522 8-288 (745)
87 KOG0300 WD40 repeat-containing 100.0 2E-28 4.4E-33 218.5 21.4 286 209-563 141-476 (481)
88 PTZ00420 coronin; Provisional 100.0 3.7E-27 8.1E-32 240.9 33.8 227 293-563 50-293 (568)
89 KOG0973 Histone transcription 100.0 3.6E-28 7.7E-33 250.2 25.7 282 208-525 61-358 (942)
90 KOG2096 WD40 repeat protein [G 100.0 2E-27 4.4E-32 212.4 26.8 291 205-520 75-400 (420)
91 PTZ00420 coronin; Provisional 100.0 7.2E-27 1.6E-31 238.8 34.6 245 233-545 49-318 (568)
92 KOG0268 Sof1-like rRNA process 100.0 7.6E-29 1.7E-33 225.2 16.3 285 209-525 59-348 (433)
93 KOG0301 Phospholipase A2-activ 100.0 5.7E-27 1.2E-31 229.6 27.2 272 272-563 11-288 (745)
94 KOG1036 Mitotic spindle checkp 100.0 2.3E-26 5E-31 205.4 28.4 266 216-553 13-294 (323)
95 KOG0308 Conserved WD40 repeat- 100.0 1.4E-27 3E-32 232.1 20.1 287 221-560 29-324 (735)
96 KOG1446 Histone H3 (Lys4) meth 100.0 1E-25 2.2E-30 202.4 29.9 242 311-563 9-262 (311)
97 KOG0310 Conserved WD40 repeat- 100.0 3.5E-26 7.5E-31 215.9 28.1 275 217-521 27-308 (487)
98 KOG0294 WD40 repeat-containing 100.0 4.3E-26 9.3E-31 203.9 27.0 259 209-540 36-304 (362)
99 KOG0289 mRNA splicing factor [ 100.0 1.3E-26 2.8E-31 215.4 24.1 235 276-562 220-459 (506)
100 KOG1332 Vesicle coat complex C 100.0 4E-27 8.7E-32 203.2 18.5 255 210-522 5-286 (299)
101 KOG0275 Conserved WD40 repeat- 100.0 2.7E-27 5.8E-32 211.9 17.8 238 275-562 213-466 (508)
102 KOG0264 Nucleosome remodeling 100.0 2.4E-26 5.3E-31 215.5 24.6 258 211-522 119-404 (422)
103 KOG1332 Vesicle coat complex C 100.0 3.7E-27 8.1E-32 203.4 17.1 246 275-561 11-284 (299)
104 KOG1063 RNA polymerase II elon 100.0 1.2E-25 2.6E-30 220.3 28.9 345 208-562 183-647 (764)
105 KOG2106 Uncharacterized conser 99.9 5.2E-24 1.1E-28 201.5 37.3 312 216-560 200-518 (626)
106 KOG1408 WD40 repeat protein [F 99.9 2E-25 4.4E-30 218.8 28.3 328 219-562 327-712 (1080)
107 KOG0640 mRNA cleavage stimulat 99.9 6.6E-26 1.4E-30 202.0 21.8 280 274-562 111-425 (430)
108 KOG0639 Transducin-like enhanc 99.9 4.5E-26 9.8E-31 215.1 21.9 284 214-562 417-703 (705)
109 KOG0264 Nucleosome remodeling 99.9 6.2E-26 1.3E-30 212.8 21.0 248 273-562 122-403 (422)
110 KOG0772 Uncharacterized conser 99.9 5.1E-26 1.1E-30 215.6 19.5 252 273-562 165-444 (641)
111 KOG1274 WD40 repeat protein [G 99.9 1.1E-24 2.5E-29 220.1 30.2 270 274-557 12-294 (933)
112 KOG2106 Uncharacterized conser 99.9 1.3E-23 2.9E-28 198.8 35.4 325 208-563 96-477 (626)
113 KOG4283 Transcription-coupled 99.9 4.2E-25 9.2E-30 195.6 23.7 298 210-521 37-364 (397)
114 KOG0283 WD40 repeat-containing 99.9 8.8E-26 1.9E-30 227.1 21.9 242 311-563 261-532 (712)
115 KOG2445 Nuclear pore complex c 99.9 1.6E-24 3.4E-29 193.3 26.7 279 211-538 8-337 (361)
116 KOG0650 WD40 repeat nucleolar 99.9 1.8E-25 3.9E-30 215.5 21.5 291 202-519 386-732 (733)
117 KOG0300 WD40 repeat-containing 99.9 3.3E-25 7.3E-30 198.0 21.7 273 273-563 146-428 (481)
118 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.4E-23 5.1E-28 203.8 37.2 286 228-543 1-300 (300)
119 KOG2096 WD40 repeat protein [G 99.9 1.7E-24 3.6E-29 193.9 25.7 277 273-561 84-400 (420)
120 KOG0294 WD40 repeat-containing 99.9 2E-24 4.3E-29 193.3 26.1 260 290-564 4-282 (362)
121 KOG1408 WD40 repeat protein [F 99.9 2.8E-25 6.1E-30 217.8 22.3 285 230-523 394-714 (1080)
122 KOG0269 WD40 repeat-containing 99.9 1.1E-25 2.4E-30 223.1 19.7 288 218-525 41-343 (839)
123 KOG1274 WD40 repeat protein [G 99.9 1.6E-24 3.4E-29 219.1 26.7 241 313-563 10-262 (933)
124 KOG0308 Conserved WD40 repeat- 99.9 2.8E-25 6.1E-30 216.2 18.8 231 285-563 35-285 (735)
125 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 6.1E-23 1.3E-27 200.8 35.7 265 287-563 1-279 (300)
126 KOG0267 Microtubule severing p 99.9 2.5E-26 5.3E-31 226.0 11.0 255 227-554 3-259 (825)
127 KOG0647 mRNA export protein (c 99.9 1.2E-23 2.5E-28 187.4 23.3 236 274-563 26-281 (347)
128 KOG2055 WD40 repeat protein [G 99.9 1.2E-23 2.6E-28 197.3 24.3 280 273-562 211-511 (514)
129 KOG0646 WD40 repeat protein [G 99.9 8.2E-24 1.8E-28 198.9 22.3 228 275-544 81-330 (476)
130 KOG1273 WD40 repeat protein [G 99.9 3.7E-23 7.9E-28 185.1 24.0 272 278-562 26-321 (405)
131 KOG2048 WD40 repeat protein [G 99.9 1E-21 2.2E-26 192.7 35.4 324 210-563 62-505 (691)
132 KOG1539 WD repeat protein [Gen 99.9 1.1E-21 2.4E-26 196.4 36.2 319 217-562 160-605 (910)
133 KOG0299 U3 snoRNP-associated p 99.9 3E-23 6.5E-28 194.7 23.1 237 274-562 141-409 (479)
134 KOG1445 Tumor-specific antigen 99.9 2.2E-23 4.7E-28 202.1 22.3 152 402-562 630-797 (1012)
135 KOG0269 WD40 repeat-containing 99.9 4.3E-24 9.3E-29 212.0 17.3 237 319-564 42-297 (839)
136 KOG4378 Nuclear protein COP1 [ 99.9 1.8E-23 3.8E-28 197.5 20.2 239 277-564 36-281 (673)
137 KOG0267 Microtubule severing p 99.9 8.2E-25 1.8E-29 215.4 10.8 236 212-514 24-260 (825)
138 KOG0302 Ribosome Assembly prot 99.9 7.3E-23 1.6E-27 187.4 20.9 256 212-520 147-436 (440)
139 KOG0646 WD40 repeat protein [G 99.9 2.8E-22 6E-27 188.6 25.0 263 292-563 12-307 (476)
140 KOG2048 WD40 repeat protein [G 99.9 1.6E-21 3.5E-26 191.3 30.8 280 215-561 24-317 (691)
141 KOG2445 Nuclear pore complex c 99.9 7.7E-22 1.7E-26 176.3 25.3 243 312-561 9-316 (361)
142 KOG4283 Transcription-coupled 99.9 1.1E-21 2.4E-26 174.0 25.9 276 274-560 42-362 (397)
143 KOG0302 Ribosome Assembly prot 99.9 2.3E-22 5E-27 184.1 21.7 238 274-560 150-435 (440)
144 KOG2055 WD40 repeat protein [G 99.9 9.6E-22 2.1E-26 184.6 25.6 284 216-522 213-512 (514)
145 KOG1009 Chromatin assembly com 99.9 5.9E-22 1.3E-26 183.3 23.9 294 217-562 14-371 (434)
146 KOG4328 WD40 protein [Function 99.9 7.3E-22 1.6E-26 185.2 23.4 288 211-561 181-493 (498)
147 KOG1034 Transcriptional repres 99.9 1.7E-21 3.8E-26 175.5 24.2 297 210-563 32-383 (385)
148 COG2319 FOG: WD40 repeat [Gene 99.9 3.1E-19 6.8E-24 182.7 44.2 327 211-563 60-400 (466)
149 KOG0307 Vesicle coat complex C 99.9 6.6E-23 1.4E-27 212.5 15.8 243 275-525 64-330 (1049)
150 KOG2919 Guanine nucleotide-bin 99.9 3.3E-21 7.1E-26 173.3 23.2 281 220-514 53-362 (406)
151 KOG1036 Mitotic spindle checkp 99.9 5E-21 1.1E-25 171.4 24.3 234 275-563 13-262 (323)
152 KOG0639 Transducin-like enhanc 99.9 7.4E-22 1.6E-26 186.8 17.1 237 217-521 466-703 (705)
153 KOG1273 WD40 repeat protein [G 99.9 1.9E-20 4.1E-25 167.8 24.0 277 219-523 26-323 (405)
154 KOG0270 WD40 repeat-containing 99.9 2.7E-21 5.9E-26 180.9 19.2 233 286-526 191-453 (463)
155 KOG0270 WD40 repeat-containing 99.9 1.9E-20 4.1E-25 175.3 23.3 236 320-563 177-449 (463)
156 KOG0642 Cell-cycle nuclear pro 99.9 2.6E-21 5.7E-26 186.2 16.6 264 210-492 288-573 (577)
157 KOG1524 WD40 repeat-containing 99.9 1.1E-20 2.3E-25 180.5 20.6 271 215-519 13-283 (737)
158 KOG4328 WD40 protein [Function 99.9 1.5E-20 3.3E-25 176.5 21.2 242 274-562 185-449 (498)
159 KOG0321 WD40 repeat-containing 99.9 2.2E-20 4.8E-25 182.0 22.9 267 287-562 64-390 (720)
160 COG2319 FOG: WD40 repeat [Gene 99.9 7.2E-18 1.6E-22 172.6 43.2 327 209-563 101-442 (466)
161 KOG1538 Uncharacterized conser 99.9 7.3E-20 1.6E-24 178.9 24.2 275 276-562 13-292 (1081)
162 KOG0307 Vesicle coat complex C 99.9 2.9E-21 6.3E-26 200.5 15.0 276 280-563 11-327 (1049)
163 KOG0321 WD40 repeat-containing 99.9 4.6E-20 1E-24 179.8 22.0 285 220-524 53-393 (720)
164 KOG0650 WD40 repeat nucleolar 99.9 1.1E-19 2.4E-24 175.9 23.8 278 272-560 397-732 (733)
165 KOG1587 Cytoplasmic dynein int 99.9 2.4E-19 5.3E-24 181.5 27.4 241 275-523 242-517 (555)
166 KOG4378 Nuclear protein COP1 [ 99.9 5.9E-20 1.3E-24 173.8 21.1 264 218-545 36-305 (673)
167 KOG1009 Chromatin assembly com 99.9 8.2E-20 1.8E-24 169.2 21.5 291 210-526 59-376 (434)
168 KOG1007 WD repeat protein TSSC 99.8 2E-19 4.4E-24 159.4 20.7 257 210-523 57-362 (370)
169 KOG0322 G-protein beta subunit 99.8 3.1E-20 6.8E-25 162.6 15.3 289 204-521 2-322 (323)
170 KOG2919 Guanine nucleotide-bin 99.8 4.2E-19 9.2E-24 159.8 22.3 268 278-554 52-361 (406)
171 KOG0290 Conserved WD40 repeat- 99.8 9E-19 1.9E-23 155.5 23.8 280 217-559 45-361 (364)
172 KOG0644 Uncharacterized conser 99.8 2.1E-20 4.5E-25 187.0 12.9 282 209-562 183-467 (1113)
173 KOG0642 Cell-cycle nuclear pro 99.8 2.4E-19 5.2E-24 172.8 15.5 222 274-528 293-567 (577)
174 KOG0649 WD40 repeat protein [G 99.8 3.6E-17 7.9E-22 141.8 26.6 267 277-563 12-317 (325)
175 KOG4227 WD40 repeat protein [G 99.8 3E-18 6.5E-23 157.9 21.1 292 210-522 50-387 (609)
176 KOG0303 Actin-binding protein 99.8 2.2E-18 4.8E-23 159.1 20.2 209 311-563 76-294 (472)
177 KOG1963 WD40 repeat protein [G 99.8 5.3E-17 1.2E-21 164.7 31.8 278 274-563 204-538 (792)
178 KOG1538 Uncharacterized conser 99.8 2.4E-16 5.3E-21 154.5 33.6 218 209-428 46-292 (1081)
179 KOG1963 WD40 repeat protein [G 99.8 2.2E-17 4.8E-22 167.5 25.8 295 213-529 202-546 (792)
180 KOG1523 Actin-related protein 99.8 7.8E-18 1.7E-22 151.7 19.9 232 276-555 11-271 (361)
181 KOG1007 WD repeat protein TSSC 99.8 2.7E-17 5.8E-22 146.0 21.9 258 296-562 39-360 (370)
182 KOG1034 Transcriptional repres 99.8 2.6E-18 5.7E-23 155.1 15.8 267 215-522 88-383 (385)
183 KOG1524 WD40 repeat-containing 99.8 1E-17 2.2E-22 160.4 19.9 261 274-560 13-283 (737)
184 KOG1517 Guanine nucleotide bin 99.8 2.6E-17 5.7E-22 169.1 23.4 289 212-525 1060-1384(1387)
185 PRK11028 6-phosphogluconolacto 99.8 6.7E-16 1.5E-20 153.0 32.8 271 231-563 5-304 (330)
186 KOG1587 Cytoplasmic dynein int 99.8 2E-16 4.4E-21 160.5 27.7 257 297-562 222-515 (555)
187 KOG0303 Actin-binding protein 99.8 3.8E-18 8.2E-23 157.6 13.7 160 393-561 75-247 (472)
188 KOG0322 G-protein beta subunit 99.8 1.5E-17 3.3E-22 145.8 15.8 276 273-562 12-322 (323)
189 KOG1188 WD40 repeat protein [G 99.8 4.9E-17 1.1E-21 147.8 19.3 265 288-561 41-344 (376)
190 KOG4497 Uncharacterized conser 99.8 3.7E-16 8.1E-21 141.3 22.7 264 273-556 89-425 (447)
191 PRK01742 tolB translocation pr 99.7 8.9E-17 1.9E-21 164.3 21.2 211 296-562 183-400 (429)
192 KOG2110 Uncharacterized conser 99.7 3.4E-15 7.5E-20 137.4 28.5 235 317-563 6-248 (391)
193 KOG2139 WD40 repeat protein [G 99.7 2.6E-15 5.7E-20 137.6 27.0 275 218-562 100-430 (445)
194 KOG2110 Uncharacterized conser 99.7 1.5E-14 3.3E-19 133.2 32.1 233 276-523 6-249 (391)
195 PRK01742 tolB translocation pr 99.7 2E-16 4.4E-21 161.6 22.4 213 275-544 203-426 (429)
196 KOG0649 WD40 repeat protein [G 99.7 9.7E-16 2.1E-20 133.0 22.6 213 318-544 12-257 (325)
197 KOG1272 WD40-repeat-containing 99.7 9.3E-18 2E-22 158.1 10.7 227 320-560 133-359 (545)
198 KOG1517 Guanine nucleotide bin 99.7 6.8E-16 1.5E-20 158.9 23.5 276 277-562 1066-1380(1387)
199 KOG0290 Conserved WD40 repeat- 99.7 7.6E-16 1.6E-20 137.1 19.6 230 213-453 93-347 (364)
200 KOG1334 WD40 repeat protein [G 99.7 8E-17 1.7E-21 152.8 14.1 290 210-524 136-468 (559)
201 KOG2139 WD40 repeat protein [G 99.7 3.7E-15 8E-20 136.6 22.2 239 276-556 99-368 (445)
202 PRK11028 6-phosphogluconolacto 99.7 4.8E-14 1E-18 139.7 30.8 266 217-541 35-327 (330)
203 KOG1523 Actin-related protein 99.7 8E-15 1.7E-19 132.5 21.8 236 217-513 11-269 (361)
204 KOG0771 Prolactin regulatory e 99.7 9.5E-16 2.1E-20 143.6 16.0 195 279-522 148-354 (398)
205 KOG1445 Tumor-specific antigen 99.7 7.6E-16 1.6E-20 150.3 15.6 234 286-562 590-843 (1012)
206 PF02239 Cytochrom_D1: Cytochr 99.7 5.7E-14 1.2E-18 139.0 29.3 305 232-563 10-347 (369)
207 KOG0771 Prolactin regulatory e 99.7 1E-14 2.3E-19 136.7 22.5 195 362-562 148-353 (398)
208 KOG2111 Uncharacterized conser 99.7 3.6E-14 7.8E-19 128.3 24.5 233 318-563 7-256 (346)
209 KOG2111 Uncharacterized conser 99.7 6E-13 1.3E-17 120.5 31.5 235 277-524 7-258 (346)
210 KOG4227 WD40 repeat protein [G 99.6 4.3E-14 9.3E-19 130.7 22.0 279 272-561 53-385 (609)
211 PRK05137 tolB translocation pr 99.6 1.5E-13 3.3E-18 141.0 28.5 213 297-562 182-411 (435)
212 PF08662 eIF2A: Eukaryotic tra 99.6 3.3E-14 7.1E-19 127.9 20.4 149 404-563 10-179 (194)
213 KOG2394 WD40 protein DMR-N9 [G 99.6 7.4E-15 1.6E-19 141.2 16.9 220 284-526 182-456 (636)
214 KOG1188 WD40 repeat protein [G 99.6 1.3E-14 2.8E-19 132.2 16.7 185 370-563 41-242 (376)
215 KOG1240 Protein kinase contain 99.6 1.6E-13 3.4E-18 144.0 26.8 264 206-523 1038-1335(1431)
216 PRK04922 tolB translocation pr 99.6 1.1E-13 2.5E-18 141.7 25.5 213 297-562 184-410 (433)
217 KOG1310 WD40 repeat protein [G 99.6 3E-15 6.4E-20 144.0 12.6 208 308-563 42-303 (758)
218 PRK02889 tolB translocation pr 99.6 9.5E-14 2.1E-18 141.8 24.6 206 297-555 176-392 (427)
219 PRK03629 tolB translocation pr 99.6 4.4E-13 9.6E-18 136.7 29.1 214 276-543 199-427 (429)
220 PRK03629 tolB translocation pr 99.6 5.8E-13 1.3E-17 135.9 29.1 207 297-556 179-396 (429)
221 PRK05137 tolB translocation pr 99.6 5.2E-13 1.1E-17 137.1 28.9 215 275-544 201-433 (435)
222 KOG1272 WD40-repeat-containing 99.6 5.5E-15 1.2E-19 139.6 12.7 270 218-519 131-406 (545)
223 PRK04922 tolB translocation pr 99.6 3.1E-13 6.6E-18 138.6 26.0 213 276-543 204-432 (433)
224 KOG2321 WD40 repeat protein [G 99.6 2.2E-13 4.7E-18 132.2 22.8 271 275-559 51-339 (703)
225 KOG1334 WD40 repeat protein [G 99.6 1.5E-14 3.2E-19 137.7 13.8 282 271-561 138-464 (559)
226 PRK02889 tolB translocation pr 99.6 3.5E-13 7.7E-18 137.6 25.2 215 275-544 195-425 (427)
227 KOG0644 Uncharacterized conser 99.6 3E-15 6.6E-20 150.6 9.0 234 310-562 184-425 (1113)
228 PF08662 eIF2A: Eukaryotic tra 99.6 4.7E-13 1E-17 120.4 22.2 117 398-529 58-185 (194)
229 KOG1310 WD40 repeat protein [G 99.6 4.4E-14 9.5E-19 136.1 14.7 221 271-530 46-311 (758)
230 KOG1354 Serine/threonine prote 99.6 1.9E-13 4.1E-18 124.7 17.8 269 275-562 25-358 (433)
231 KOG3881 Uncharacterized conser 99.6 1.2E-12 2.6E-17 121.6 22.6 272 217-543 56-341 (412)
232 KOG4497 Uncharacterized conser 99.5 3.6E-13 7.7E-18 122.2 17.9 302 221-561 13-389 (447)
233 KOG2041 WD40 repeat protein [G 99.5 2E-12 4.4E-17 128.4 24.3 296 218-563 16-337 (1189)
234 KOG2394 WD40 protein DMR-N9 [G 99.5 3.8E-13 8.2E-18 129.6 18.0 241 276-542 124-383 (636)
235 KOG1409 Uncharacterized conser 99.5 7.1E-13 1.5E-17 121.1 18.8 323 210-563 18-394 (404)
236 TIGR02800 propeller_TolB tol-p 99.5 9.7E-12 2.1E-16 127.7 27.9 206 297-555 170-386 (417)
237 COG5354 Uncharacterized protei 99.5 3.1E-11 6.8E-16 116.0 28.7 312 217-562 33-394 (561)
238 KOG2315 Predicted translation 99.5 2.5E-11 5.5E-16 118.1 27.2 272 276-562 35-389 (566)
239 KOG1354 Serine/threonine prote 99.5 1.6E-12 3.4E-17 118.8 17.6 313 217-560 26-431 (433)
240 TIGR02800 propeller_TolB tol-p 99.5 3E-11 6.6E-16 124.0 28.1 212 276-542 190-417 (417)
241 KOG1240 Protein kinase contain 99.5 8.2E-12 1.8E-16 131.4 22.8 252 302-562 1034-1333(1431)
242 PRK01029 tolB translocation pr 99.5 2.6E-11 5.6E-16 123.3 25.9 222 277-545 186-426 (428)
243 KOG0974 WD-repeat protein WDR6 99.5 3E-12 6.6E-17 132.8 19.0 221 288-523 62-289 (967)
244 PRK00178 tolB translocation pr 99.5 5.3E-11 1.2E-15 122.4 28.2 204 298-554 180-394 (430)
245 KOG2321 WD40 repeat protein [G 99.4 3.9E-11 8.5E-16 116.8 23.7 279 215-523 50-344 (703)
246 PRK01029 tolB translocation pr 99.4 6.5E-11 1.4E-15 120.4 26.6 216 297-562 165-402 (428)
247 KOG4547 WD40 repeat-containing 99.4 4.2E-11 9.1E-16 117.5 22.6 188 325-523 2-221 (541)
248 KOG2314 Translation initiation 99.4 1.2E-10 2.6E-15 113.1 25.3 314 220-563 214-573 (698)
249 KOG3881 Uncharacterized conser 99.4 4.3E-11 9.4E-16 111.5 21.2 238 317-563 56-320 (412)
250 PRK04792 tolB translocation pr 99.4 1.2E-10 2.6E-15 119.4 26.9 204 298-554 199-413 (448)
251 PRK00178 tolB translocation pr 99.4 9.5E-11 2E-15 120.6 26.0 215 276-544 199-428 (430)
252 KOG2315 Predicted translation 99.4 1.2E-10 2.7E-15 113.4 24.4 293 218-544 75-411 (566)
253 PF02239 Cytochrom_D1: Cytochr 99.4 8.8E-10 1.9E-14 109.3 30.1 267 288-563 6-302 (369)
254 KOG4547 WD40 repeat-containing 99.4 1.9E-10 4.2E-15 112.9 23.9 208 226-481 3-221 (541)
255 KOG0974 WD-repeat protein WDR6 99.3 3.6E-11 7.9E-16 125.0 18.2 199 217-430 88-289 (967)
256 PF10282 Lactonase: Lactonase, 99.3 3.1E-08 6.8E-13 98.3 38.8 265 290-563 2-322 (345)
257 PRK04792 tolB translocation pr 99.3 2.9E-10 6.3E-15 116.6 24.7 214 276-543 218-446 (448)
258 KOG0280 Uncharacterized conser 99.3 1.1E-10 2.3E-15 104.9 18.3 181 372-561 88-282 (339)
259 KOG2314 Translation initiation 99.3 4.9E-10 1.1E-14 108.9 23.9 274 278-563 213-525 (698)
260 PF04762 IKI3: IKI3 family; I 99.3 8E-09 1.7E-13 113.6 36.4 323 216-562 120-518 (928)
261 COG5354 Uncharacterized protei 99.3 1.9E-09 4.1E-14 104.1 26.7 300 217-555 72-421 (561)
262 PF10282 Lactonase: Lactonase, 99.3 1.5E-07 3.2E-12 93.6 40.6 258 276-541 37-345 (345)
263 PF04762 IKI3: IKI3 family; I 99.3 9E-09 2E-13 113.2 34.0 274 275-563 75-379 (928)
264 KOG1064 RAVE (regulator of V-A 99.3 1.6E-11 3.6E-16 133.4 12.1 201 212-489 2204-2407(2439)
265 KOG2041 WD40 repeat protein [G 99.3 2.5E-09 5.4E-14 106.9 25.7 223 210-452 65-319 (1189)
266 TIGR03300 assembly_YfgL outer 99.3 5.3E-08 1.2E-12 98.4 35.0 293 227-560 64-376 (377)
267 PLN02919 haloacid dehalogenase 99.2 1.5E-08 3.2E-13 113.7 32.0 249 279-563 571-888 (1057)
268 TIGR02658 TTQ_MADH_Hv methylam 99.2 1.6E-07 3.5E-12 91.1 34.8 239 283-532 53-340 (352)
269 KOG1064 RAVE (regulator of V-A 99.2 6.8E-11 1.5E-15 128.7 12.3 245 286-555 2179-2438(2439)
270 COG5170 CDC55 Serine/threonine 99.2 6E-10 1.3E-14 100.8 15.5 267 275-560 26-364 (460)
271 KOG0280 Uncharacterized conser 99.2 2.3E-09 4.9E-14 96.6 19.0 249 216-524 69-335 (339)
272 KOG4190 Uncharacterized conser 99.2 5.2E-11 1.1E-15 115.3 7.5 182 309-532 728-916 (1034)
273 TIGR02658 TTQ_MADH_Hv methylam 99.1 8.3E-07 1.8E-11 86.2 35.2 245 297-563 27-330 (352)
274 PF08513 LisH: LisH; InterPro 99.1 6.8E-12 1.5E-16 71.6 -0.3 27 7-33 1-27 (27)
275 PLN02919 haloacid dehalogenase 99.1 1.7E-07 3.7E-12 105.2 32.6 266 220-526 571-892 (1057)
276 PRK04043 tolB translocation pr 99.1 1.5E-07 3.2E-12 95.3 28.9 201 298-554 170-388 (419)
277 PF15492 Nbas_N: Neuroblastoma 99.1 3.2E-07 7E-12 83.2 26.5 246 222-532 3-269 (282)
278 KOG0882 Cyclophilin-related pe 99.0 8.4E-09 1.8E-13 98.1 16.4 267 283-560 16-369 (558)
279 COG2706 3-carboxymuconate cycl 99.0 2.6E-06 5.6E-11 79.8 32.3 258 296-562 15-320 (346)
280 TIGR03300 assembly_YfgL outer 99.0 2.5E-07 5.5E-12 93.5 27.8 259 287-563 65-338 (377)
281 KOG1920 IkappaB kinase complex 99.0 4.6E-07 9.9E-12 96.7 29.0 273 276-562 69-364 (1265)
282 COG2706 3-carboxymuconate cycl 99.0 6.9E-06 1.5E-10 77.0 32.5 252 215-528 38-329 (346)
283 PF08450 SGL: SMP-30/Gluconola 99.0 5.9E-06 1.3E-10 78.0 33.1 222 280-553 4-245 (246)
284 PRK04043 tolB translocation pr 99.0 5.4E-07 1.2E-11 91.3 26.4 193 277-524 189-402 (419)
285 KOG1409 Uncharacterized conser 98.9 2.7E-08 5.9E-13 91.6 15.0 237 275-524 24-272 (404)
286 COG4946 Uncharacterized protei 98.9 7.5E-07 1.6E-11 85.6 23.9 214 324-552 274-507 (668)
287 KOG0309 Conserved WD40 repeat- 98.9 2.5E-08 5.3E-13 100.4 13.9 290 217-523 25-340 (1081)
288 COG5170 CDC55 Serine/threonine 98.9 1.3E-07 2.9E-12 85.9 17.2 275 217-520 27-365 (460)
289 COG4946 Uncharacterized protei 98.9 5.8E-06 1.2E-10 79.7 28.3 307 224-563 327-654 (668)
290 KOG1832 HIV-1 Vpr-binding prot 98.9 4.2E-09 9.1E-14 107.7 7.0 254 273-552 1099-1378(1516)
291 KOG3914 WD repeat protein WDR4 98.9 6.7E-08 1.4E-12 91.1 14.4 88 392-489 144-232 (390)
292 PF13360 PQQ_2: PQQ-like domai 98.9 2.7E-06 5.9E-11 79.9 25.9 220 296-529 2-237 (238)
293 KOG3914 WD repeat protein WDR4 98.8 4.4E-08 9.5E-13 92.3 13.0 166 221-438 67-232 (390)
294 KOG4190 Uncharacterized conser 98.8 1.6E-08 3.4E-13 98.5 10.2 272 274-559 734-1032(1034)
295 PRK11138 outer membrane biogen 98.8 1.4E-05 3E-10 81.2 32.0 251 287-562 120-393 (394)
296 KOG4532 WD40-like repeat conta 98.8 9.9E-07 2.1E-11 78.8 20.1 215 328-553 84-322 (344)
297 KOG0309 Conserved WD40 repeat- 98.8 8.5E-08 1.8E-12 96.6 13.6 277 275-562 24-338 (1081)
298 PF00400 WD40: WD domain, G-be 98.8 2.9E-08 6.2E-13 63.7 6.5 39 482-520 1-39 (39)
299 KOG1912 WD40 repeat protein [G 98.7 1.1E-06 2.3E-11 89.5 19.3 235 278-523 18-305 (1062)
300 KOG2695 WD40 repeat protein [G 98.7 1E-07 2.2E-12 88.0 9.8 157 376-543 231-402 (425)
301 PF00400 WD40: WD domain, G-be 98.7 5.2E-08 1.1E-12 62.5 5.7 38 390-427 2-39 (39)
302 KOG4532 WD40-like repeat conta 98.7 9.5E-06 2.1E-10 72.7 20.8 228 287-522 84-331 (344)
303 KOG1275 PAB-dependent poly(A) 98.7 7.3E-07 1.6E-11 92.3 15.9 183 327-521 146-341 (1118)
304 KOG0882 Cyclophilin-related pe 98.6 5.3E-07 1.2E-11 86.1 13.6 237 315-563 8-305 (558)
305 PF13360 PQQ_2: PQQ-like domai 98.6 3E-05 6.6E-10 72.8 24.9 213 337-563 2-230 (238)
306 PF15492 Nbas_N: Neuroblastoma 98.6 1.8E-05 3.9E-10 72.1 21.7 188 220-439 47-269 (282)
307 KOG2695 WD40 repeat protein [G 98.6 2.6E-07 5.6E-12 85.3 9.2 156 282-439 218-386 (425)
308 KOG2066 Vacuolar assembly/sort 98.6 3.6E-06 7.9E-11 86.3 17.7 176 369-563 49-233 (846)
309 KOG1912 WD40 repeat protein [G 98.5 1.5E-06 3.2E-11 88.5 14.2 159 401-561 17-184 (1062)
310 KOG3617 WD40 and TPR repeat-co 98.5 9.6E-06 2.1E-10 83.5 19.1 107 221-346 20-131 (1416)
311 KOG4714 Nucleoporin [Nuclear s 98.5 5.3E-06 1.2E-10 74.0 14.9 164 310-481 83-255 (319)
312 PF07433 DUF1513: Protein of u 98.5 0.00039 8.4E-09 65.5 28.0 243 219-512 7-276 (305)
313 KOG1920 IkappaB kinase complex 98.5 0.00025 5.4E-09 76.6 29.0 235 217-482 69-324 (1265)
314 KOG2066 Vacuolar assembly/sort 98.5 2.2E-05 4.8E-10 80.7 20.5 177 278-480 42-233 (846)
315 KOG4714 Nucleoporin [Nuclear s 98.4 4.7E-06 1E-10 74.3 12.5 161 214-430 87-255 (319)
316 KOG1645 RING-finger-containing 98.4 7E-05 1.5E-09 71.1 20.9 244 273-522 191-461 (463)
317 PRK02888 nitrous-oxide reducta 98.4 7.5E-05 1.6E-09 76.7 22.9 171 380-563 216-404 (635)
318 KOG3621 WD40 repeat-containing 98.4 8E-05 1.7E-09 75.8 21.9 146 215-376 32-188 (726)
319 KOG2114 Vacuolar assembly/sort 98.4 0.00014 3E-09 75.6 23.1 212 282-531 30-252 (933)
320 PF07433 DUF1513: Protein of u 98.3 0.00039 8.3E-09 65.5 23.8 203 320-563 8-247 (305)
321 PRK11138 outer membrane biogen 98.3 0.0002 4.3E-09 72.8 24.1 258 287-562 69-352 (394)
322 KOG1832 HIV-1 Vpr-binding prot 98.3 6E-07 1.3E-11 92.4 5.5 263 209-510 1094-1377(1516)
323 KOG1275 PAB-dependent poly(A) 98.3 1.6E-05 3.4E-10 82.7 15.3 178 370-561 148-340 (1118)
324 PF08450 SGL: SMP-30/Gluconola 98.3 0.00088 1.9E-08 63.2 26.5 177 370-562 13-212 (246)
325 cd00216 PQQ_DH Dehydrogenases 98.2 0.0049 1.1E-07 64.4 32.3 298 228-551 61-455 (488)
326 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0017 3.7E-08 64.8 27.5 290 225-554 1-348 (353)
327 COG0823 TolB Periplasmic compo 98.2 0.00028 6.2E-09 71.2 21.9 141 404-554 242-390 (425)
328 cd00216 PQQ_DH Dehydrogenases 98.2 0.00089 1.9E-08 69.9 25.9 271 288-563 62-424 (488)
329 KOG1645 RING-finger-containing 98.2 6.5E-05 1.4E-09 71.3 15.3 240 311-562 188-460 (463)
330 KOG3617 WD40 and TPR repeat-co 98.2 5.4E-05 1.2E-09 78.2 14.9 233 280-560 20-330 (1416)
331 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0019 4.1E-08 65.5 26.0 49 298-347 62-110 (410)
332 KOG2114 Vacuolar assembly/sort 98.1 0.0008 1.7E-08 70.2 21.1 188 212-404 60-261 (933)
333 PF11768 DUF3312: Protein of u 98.0 0.00012 2.6E-09 73.4 13.9 114 439-563 257-400 (545)
334 PF14655 RAB3GAP2_N: Rab3 GTPa 98.0 0.021 4.6E-07 57.1 28.8 88 400-489 308-407 (415)
335 PF04053 Coatomer_WDAD: Coatom 98.0 0.0027 5.8E-08 64.5 23.0 218 315-562 31-261 (443)
336 PF11768 DUF3312: Protein of u 98.0 9.1E-05 2E-09 74.3 12.0 73 490-563 257-329 (545)
337 PF04053 Coatomer_WDAD: Coatom 97.9 0.00039 8.5E-09 70.4 16.7 146 395-563 28-173 (443)
338 smart00667 LisH Lissencephaly 97.9 1.9E-06 4E-11 53.1 -0.1 31 6-36 3-33 (34)
339 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.041 8.9E-07 57.8 33.7 75 472-547 441-517 (527)
340 PRK02888 nitrous-oxide reducta 97.9 0.0013 2.9E-08 67.8 20.2 212 324-551 200-449 (635)
341 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.0079 1.7E-07 54.3 22.0 205 328-551 23-237 (354)
342 PF04841 Vps16_N: Vps16, N-ter 97.9 0.026 5.7E-07 57.3 28.9 222 276-530 81-322 (410)
343 KOG1008 Uncharacterized conser 97.9 5.5E-06 1.2E-10 82.9 2.0 194 276-480 57-275 (783)
344 PF00930 DPPIV_N: Dipeptidyl p 97.8 0.0068 1.5E-07 60.5 23.6 273 216-509 42-344 (353)
345 PF08596 Lgl_C: Lethal giant l 97.8 0.029 6.4E-07 56.2 26.9 290 218-560 3-332 (395)
346 KOG3621 WD40 repeat-containing 97.8 0.0004 8.7E-09 70.8 13.6 120 276-430 34-155 (726)
347 COG0823 TolB Periplasmic compo 97.8 0.00066 1.4E-08 68.6 15.4 145 399-554 192-346 (425)
348 PF06433 Me-amine-dh_H: Methyl 97.8 0.013 2.7E-07 56.2 22.8 252 280-534 40-332 (342)
349 PF14583 Pectate_lyase22: Olig 97.8 0.05 1.1E-06 53.3 28.8 271 282-562 42-380 (386)
350 PF00780 CNH: CNH domain; Int 97.6 0.065 1.4E-06 51.4 26.6 225 286-533 6-266 (275)
351 COG3391 Uncharacterized conser 97.6 0.094 2E-06 52.8 30.4 188 365-563 82-283 (381)
352 PF06977 SdiA-regulated: SdiA- 97.6 0.058 1.2E-06 50.2 26.0 198 311-519 16-247 (248)
353 KOG4640 Anaphase-promoting com 97.6 0.0003 6.5E-09 70.9 9.6 93 441-543 20-115 (665)
354 smart00320 WD40 WD40 repeats. 97.6 0.00026 5.7E-09 44.0 6.1 39 482-520 2-40 (40)
355 smart00320 WD40 WD40 repeats. 97.5 0.00027 5.9E-09 43.9 5.4 38 390-427 3-40 (40)
356 PRK13616 lipoprotein LpqB; Pro 97.5 0.0051 1.1E-07 65.0 17.3 179 378-562 328-524 (591)
357 KOG4640 Anaphase-promoting com 97.4 0.00065 1.4E-08 68.6 9.3 79 276-354 21-100 (665)
358 PF02897 Peptidase_S9_N: Proly 97.4 0.19 4E-06 51.5 29.9 241 218-484 125-408 (414)
359 PF03178 CPSF_A: CPSF A subuni 97.4 0.06 1.3E-06 53.0 23.2 208 339-560 3-262 (321)
360 COG3391 Uncharacterized conser 97.4 0.18 4E-06 50.8 31.0 217 320-545 77-310 (381)
361 PF08596 Lgl_C: Lethal giant l 97.4 0.077 1.7E-06 53.3 23.3 235 318-562 3-289 (395)
362 PF06433 Me-amine-dh_H: Methyl 97.4 0.16 3.4E-06 48.9 24.9 247 222-491 41-331 (342)
363 PF08553 VID27: VID27 cytoplas 97.3 0.012 2.6E-07 63.2 17.7 134 335-479 501-646 (794)
364 KOG1008 Uncharacterized conser 97.3 6.7E-05 1.5E-09 75.4 0.9 122 211-345 97-224 (783)
365 KOG2395 Protein involved in va 97.3 0.0071 1.5E-07 60.1 14.0 139 370-521 347-499 (644)
366 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.05 1.1E-06 43.0 16.0 91 463-559 16-110 (111)
367 COG3386 Gluconolactonase [Carb 97.3 0.21 4.6E-06 48.3 24.7 146 400-554 111-276 (307)
368 PF08553 VID27: VID27 cytoplas 97.3 0.0081 1.8E-07 64.5 15.4 135 375-521 500-646 (794)
369 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.2 0.33 7.3E-06 51.1 27.3 236 328-563 120-490 (527)
370 PF06977 SdiA-regulated: SdiA- 97.1 0.088 1.9E-06 49.0 18.5 194 211-423 16-244 (248)
371 KOG2079 Vacuolar assembly/sort 97.1 0.02 4.4E-07 61.7 15.8 76 286-361 98-175 (1206)
372 PRK13616 lipoprotein LpqB; Pro 97.0 0.059 1.3E-06 57.1 19.2 182 217-422 350-561 (591)
373 COG3386 Gluconolactonase [Carb 96.9 0.43 9.3E-06 46.1 24.8 216 283-509 32-272 (307)
374 KOG2444 WD40 repeat protein [G 96.9 0.0037 8.1E-08 55.5 7.7 106 411-523 70-178 (238)
375 PF14783 BBS2_Mid: Ciliary BBS 96.9 0.056 1.2E-06 42.7 12.9 96 223-341 9-109 (111)
376 PRK13684 Ycf48-like protein; P 96.8 0.58 1.2E-05 46.2 29.3 148 399-560 172-328 (334)
377 PF14655 RAB3GAP2_N: Rab3 GTPa 96.8 0.14 3E-06 51.4 18.5 45 488-532 303-347 (415)
378 PF10647 Gmad1: Lipoprotein Lp 96.8 0.15 3.3E-06 48.0 17.8 144 401-556 25-188 (253)
379 PF14870 PSII_BNR: Photosynthe 96.7 0.62 1.3E-05 44.8 29.9 266 275-558 16-299 (302)
380 KOG1897 Damage-specific DNA bi 96.5 1.8 3.9E-05 47.1 32.9 320 217-563 531-898 (1096)
381 KOG4441 Proteins containing BT 96.4 0.55 1.2E-05 49.9 21.4 222 286-523 284-547 (571)
382 KOG4649 PQQ (pyrrolo-quinoline 96.4 0.77 1.7E-05 42.0 27.1 257 288-562 24-299 (354)
383 PF02897 Peptidase_S9_N: Proly 96.4 1.4 3.1E-05 45.0 28.8 239 278-527 126-409 (414)
384 KOG2079 Vacuolar assembly/sort 96.4 0.012 2.7E-07 63.3 8.3 93 464-556 101-198 (1206)
385 PF12894 Apc4_WD40: Anaphase-p 96.4 0.014 3E-07 38.4 5.6 33 276-308 12-44 (47)
386 PF12894 Apc4_WD40: Anaphase-p 96.3 0.015 3.1E-07 38.3 5.5 34 492-526 11-44 (47)
387 KOG2395 Protein involved in va 96.3 0.074 1.6E-06 53.2 12.4 148 410-563 344-500 (644)
388 PF00780 CNH: CNH domain; Int 96.2 1.2 2.7E-05 42.5 26.7 225 227-491 6-266 (275)
389 PHA02713 hypothetical protein; 96.2 0.48 1E-05 50.4 19.1 184 327-525 303-536 (557)
390 PF03178 CPSF_A: CPSF A subuni 96.1 0.65 1.4E-05 45.7 18.9 128 421-562 62-201 (321)
391 TIGR03074 PQQ_membr_DH membran 96.1 1.9 4.2E-05 47.3 23.4 158 371-530 262-485 (764)
392 KOG1916 Nuclear protein, conta 96.0 0.0043 9.4E-08 65.2 3.0 124 210-345 126-264 (1283)
393 PF05096 Glu_cyclase_2: Glutam 96.0 1.3 2.9E-05 41.2 23.8 179 319-510 47-249 (264)
394 TIGR02604 Piru_Ver_Nterm putat 95.9 0.45 9.8E-06 47.7 17.0 143 401-554 15-204 (367)
395 KOG4499 Ca2+-binding protein R 95.9 0.42 9.1E-06 43.0 13.9 138 280-450 113-262 (310)
396 PF12234 Rav1p_C: RAVE protein 95.6 0.52 1.1E-05 49.7 15.9 92 468-561 47-154 (631)
397 PHA02713 hypothetical protein; 95.3 1.5 3.2E-05 46.7 18.8 93 339-433 273-379 (557)
398 KOG2444 WD40 repeat protein [G 95.1 0.077 1.7E-06 47.4 6.8 102 328-429 70-177 (238)
399 PF15390 DUF4613: Domain of un 95.1 0.98 2.1E-05 46.3 15.2 148 400-561 20-184 (671)
400 PF15390 DUF4613: Domain of un 95.0 1.4 3.1E-05 45.2 16.2 114 400-523 57-187 (671)
401 KOG4499 Ca2+-binding protein R 94.8 3 6.4E-05 37.8 19.8 137 399-544 108-264 (310)
402 COG3490 Uncharacterized protei 94.8 1.1 2.4E-05 41.7 13.5 129 404-551 40-179 (366)
403 KOG1916 Nuclear protein, conta 94.8 0.015 3.3E-07 61.4 1.9 113 407-522 243-374 (1283)
404 KOG3630 Nuclear pore complex, 94.6 0.49 1.1E-05 52.0 12.4 139 402-550 103-260 (1405)
405 PF10647 Gmad1: Lipoprotein Lp 94.5 4.4 9.5E-05 38.2 22.4 139 276-454 24-178 (253)
406 KOG4441 Proteins containing BT 94.4 3 6.4E-05 44.4 18.1 185 328-525 285-502 (571)
407 COG3204 Uncharacterized protei 94.4 4.5 9.7E-05 38.1 21.2 187 313-508 82-299 (316)
408 PF14870 PSII_BNR: Photosynthe 94.2 5.7 0.00012 38.3 28.1 105 439-557 142-255 (302)
409 PF07995 GSDH: Glucose / Sorbo 94.2 6.4 0.00014 38.8 27.9 65 493-557 253-329 (331)
410 PF10168 Nup88: Nuclear pore c 93.8 1.4 3E-05 47.9 14.3 33 398-430 145-180 (717)
411 COG3204 Uncharacterized protei 93.6 2.7 5.8E-05 39.5 13.7 115 439-563 83-210 (316)
412 PHA03098 kelch-like protein; P 93.6 2.6 5.7E-05 44.8 16.2 93 339-433 312-418 (534)
413 KOG2377 Uncharacterized conser 93.6 1.7 3.6E-05 43.2 12.8 133 285-418 31-172 (657)
414 PF05694 SBP56: 56kDa selenium 93.4 9.5 0.00021 38.3 19.5 195 227-430 86-343 (461)
415 PF12234 Rav1p_C: RAVE protein 93.3 2.9 6.2E-05 44.4 15.0 109 404-521 34-155 (631)
416 TIGR03074 PQQ_membr_DH membran 93.2 16 0.00034 40.4 23.0 150 411-563 260-477 (764)
417 KOG1897 Damage-specific DNA bi 93.1 16 0.00035 40.2 31.9 314 219-560 586-939 (1096)
418 PF05096 Glu_cyclase_2: Glutam 93.1 7.7 0.00017 36.3 22.2 178 220-417 48-249 (264)
419 PF07995 GSDH: Glucose / Sorbo 92.9 10 0.00022 37.4 27.5 54 464-517 273-330 (331)
420 KOG3630 Nuclear pore complex, 92.9 0.44 9.4E-06 52.3 8.5 151 218-375 102-260 (1405)
421 PF10313 DUF2415: Uncharacteri 92.8 0.43 9.3E-06 30.5 5.1 31 493-523 1-34 (43)
422 TIGR02604 Piru_Ver_Nterm putat 92.7 7.3 0.00016 39.1 16.8 101 401-512 73-203 (367)
423 KOG2280 Vacuolar assembly/sort 92.6 6.4 0.00014 41.8 16.0 186 338-531 64-255 (829)
424 PF07569 Hira: TUP1-like enhan 92.5 0.75 1.6E-05 42.2 8.6 64 500-564 18-96 (219)
425 PRK10115 protease 2; Provision 92.2 21 0.00045 39.2 31.6 235 277-525 128-397 (686)
426 COG3490 Uncharacterized protei 92.0 11 0.00023 35.4 17.0 140 404-551 72-243 (366)
427 COG5290 IkappaB kinase complex 91.7 2.9 6.2E-05 44.5 12.3 133 279-412 205-349 (1243)
428 PF10168 Nup88: Nuclear pore c 91.7 3.2 6.9E-05 45.3 13.4 69 494-563 86-179 (717)
429 PRK10115 protease 2; Provision 91.5 25 0.00054 38.6 34.7 193 217-429 127-344 (686)
430 PHA02790 Kelch-like protein; P 91.4 12 0.00027 39.0 17.3 103 329-433 273-388 (480)
431 TIGR02276 beta_rpt_yvtn 40-res 91.4 1.1 2.5E-05 28.3 6.3 41 502-542 1-42 (42)
432 PHA03098 kelch-like protein; P 90.9 11 0.00025 39.9 16.9 144 286-433 294-468 (534)
433 PF14727 PHTB1_N: PTHB1 N-term 90.8 20 0.00044 36.3 32.4 142 286-428 36-203 (418)
434 COG5167 VID27 Protein involved 90.6 4 8.8E-05 41.2 11.7 140 371-522 482-632 (776)
435 KOG2247 WD40 repeat-containing 90.5 0.039 8.4E-07 54.6 -2.0 132 320-453 38-171 (615)
436 PF14781 BBS2_N: Ciliary BBSom 90.2 9.5 0.00021 31.5 13.1 120 404-530 3-133 (136)
437 PF14583 Pectate_lyase22: Olig 90.1 21 0.00046 35.4 30.2 49 473-521 321-380 (386)
438 COG3823 Glutamine cyclotransfe 90.1 11 0.00024 33.6 12.6 171 227-417 55-247 (262)
439 KOG2377 Uncharacterized conser 90.0 11 0.00025 37.6 14.0 123 391-524 58-187 (657)
440 PF10313 DUF2415: Uncharacteri 90.0 1.4 3.1E-05 28.2 5.3 31 400-430 1-34 (43)
441 KOG4460 Nuclear pore complex, 89.9 5.7 0.00012 40.3 12.1 94 317-432 104-201 (741)
442 PF12657 TFIIIC_delta: Transcr 89.8 2.6 5.6E-05 37.1 9.1 36 443-481 87-122 (173)
443 KOG2280 Vacuolar assembly/sort 89.2 35 0.00076 36.6 18.5 52 295-347 62-113 (829)
444 PF12657 TFIIIC_delta: Transcr 88.8 2 4.4E-05 37.7 7.7 27 535-561 87-119 (173)
445 KOG4460 Nuclear pore complex, 88.4 9.4 0.0002 38.9 12.4 70 494-563 105-198 (741)
446 PHA02790 Kelch-like protein; P 88.3 35 0.00076 35.7 17.7 142 286-433 271-427 (480)
447 PF13449 Phytase-like: Esteras 88.3 27 0.00059 34.3 17.8 142 400-551 20-232 (326)
448 PF08728 CRT10: CRT10; InterP 87.8 22 0.00049 38.4 15.6 110 366-479 111-245 (717)
449 COG5167 VID27 Protein involved 87.2 8.7 0.00019 38.9 11.3 150 408-563 476-632 (776)
450 PF07676 PD40: WD40-like Beta 86.9 3.5 7.5E-05 25.6 5.9 31 489-519 5-38 (39)
451 PF14269 Arylsulfotran_2: Aryl 86.4 7.7 0.00017 37.5 10.6 67 495-561 146-218 (299)
452 PF08728 CRT10: CRT10; InterP 85.9 8.7 0.00019 41.3 11.4 100 463-563 115-246 (717)
453 TIGR03606 non_repeat_PQQ dehyd 84.6 52 0.0011 33.9 18.3 104 318-421 31-167 (454)
454 PRK13684 Ycf48-like protein; P 84.4 44 0.00096 32.9 29.2 173 335-520 149-329 (334)
455 KOG2659 LisH motif-containing 84.0 0.57 1.2E-05 42.2 1.6 38 3-40 23-60 (228)
456 KOG3616 Selective LIM binding 83.6 68 0.0015 34.5 17.1 72 219-310 17-88 (1636)
457 COG3823 Glutamine cyclotransfe 83.5 33 0.00071 30.8 14.0 172 327-511 55-248 (262)
458 PF07250 Glyoxal_oxid_N: Glyox 83.5 15 0.00032 34.2 10.5 124 404-531 71-206 (243)
459 COG5290 IkappaB kinase complex 83.4 28 0.00061 37.5 13.3 217 314-551 110-355 (1243)
460 PF07569 Hira: TUP1-like enhan 83.2 12 0.00026 34.3 9.9 70 283-353 18-102 (219)
461 KOG4659 Uncharacterized conser 82.6 1E+02 0.0022 35.7 18.5 23 535-557 663-685 (1899)
462 TIGR02276 beta_rpt_yvtn 40-res 82.4 8.9 0.00019 24.0 6.4 38 462-500 4-41 (42)
463 PF07676 PD40: WD40-like Beta 82.1 4.7 0.0001 25.0 4.9 27 534-560 9-38 (39)
464 PF11715 Nup160: Nucleoporin N 81.9 7 0.00015 41.7 9.1 72 285-356 156-258 (547)
465 PF05694 SBP56: 56kDa selenium 81.7 63 0.0014 32.7 25.8 220 327-552 86-392 (461)
466 KOG1983 Tomosyn and related SN 81.5 65 0.0014 37.0 16.7 31 277-307 37-67 (993)
467 PF03088 Str_synth: Strictosid 79.9 19 0.00042 27.5 8.3 44 510-553 33-76 (89)
468 TIGR03606 non_repeat_PQQ dehyd 79.8 78 0.0017 32.6 20.9 55 399-453 29-90 (454)
469 PF05935 Arylsulfotrans: Aryls 78.3 83 0.0018 32.9 15.3 152 286-440 114-312 (477)
470 PRK13613 lipoprotein LpqB; Pro 77.7 1.1E+02 0.0023 33.0 17.6 151 391-552 353-525 (599)
471 PF11715 Nup160: Nucleoporin N 76.4 12 0.00025 40.0 8.7 37 494-530 216-256 (547)
472 PLN00033 photosystem II stabil 76.4 92 0.002 31.6 32.7 143 402-558 241-394 (398)
473 PF12768 Rax2: Cortical protei 75.6 77 0.0017 30.3 14.2 114 338-452 16-147 (281)
474 KOG2247 WD40 repeat-containing 75.5 0.45 9.8E-06 47.4 -2.0 143 280-425 39-184 (615)
475 COG1506 DAP2 Dipeptidyl aminop 74.5 83 0.0018 34.1 14.6 150 397-552 57-234 (620)
476 smart00564 PQQ beta-propeller 74.4 7.7 0.00017 22.8 4.0 25 506-530 8-32 (33)
477 KOG1900 Nuclear pore complex, 74.3 48 0.001 38.1 12.5 144 416-563 94-272 (1311)
478 COG4590 ABC-type uncharacteriz 71.8 28 0.00061 34.9 9.0 156 275-433 220-390 (733)
479 PF10214 Rrn6: RNA polymerase 71.7 1.8E+02 0.0038 32.7 20.9 28 401-428 147-175 (765)
480 KOG3616 Selective LIM binding 71.5 8.8 0.00019 40.7 5.9 77 276-355 15-91 (1636)
481 PLN00033 photosystem II stabil 71.2 1.2E+02 0.0027 30.7 26.4 107 399-519 280-396 (398)
482 PF01011 PQQ: PQQ enzyme repea 70.6 11 0.00024 23.3 4.1 27 507-533 3-29 (38)
483 TIGR03118 PEPCTERM_chp_1 conse 70.3 1E+02 0.0023 29.5 27.0 227 219-451 25-307 (336)
484 PF08801 Nucleoporin_N: Nup133 70.2 1.2E+02 0.0027 30.9 14.2 29 495-523 192-220 (422)
485 PF14761 HPS3_N: Hermansky-Pud 70.0 18 0.0004 32.6 6.9 59 505-563 29-96 (215)
486 PF05935 Arylsulfotrans: Aryls 69.0 1.5E+02 0.0033 30.9 20.6 115 405-532 153-311 (477)
487 COG1506 DAP2 Dipeptidyl aminop 68.7 1.8E+02 0.0039 31.6 23.6 57 275-333 59-117 (620)
488 PF03022 MRJP: Major royal jel 67.4 1.2E+02 0.0026 29.1 20.9 163 339-511 35-254 (287)
489 PF09398 FOP_dimer: FOP N term 67.2 1.8 3.8E-05 32.2 -0.0 30 9-38 21-50 (81)
490 PF01731 Arylesterase: Arylest 65.8 37 0.00081 25.7 6.8 49 472-523 36-85 (86)
491 PF01436 NHL: NHL repeat; Int 65.6 16 0.00034 20.8 3.7 25 536-560 4-28 (28)
492 COG4257 Vgb Streptogramin lyas 64.6 1.3E+02 0.0028 28.5 13.8 139 404-561 66-216 (353)
493 PF14727 PHTB1_N: PTHB1 N-term 64.2 1.7E+02 0.0038 29.8 29.8 57 463-522 301-360 (418)
494 PF12768 Rax2: Cortical protei 63.5 85 0.0018 30.0 10.4 87 472-559 16-117 (281)
495 PF08801 Nucleoporin_N: Nup133 63.2 1.8E+02 0.0039 29.7 14.9 29 535-563 191-219 (422)
496 COG1520 FOG: WD40-like repeat 62.3 1.7E+02 0.0038 29.2 28.7 159 327-490 111-278 (370)
497 smart00564 PQQ beta-propeller 60.9 22 0.00048 20.7 4.1 25 464-488 8-32 (33)
498 COG1520 FOG: WD40-like repeat 60.8 1.8E+02 0.004 29.0 22.2 156 369-532 111-278 (370)
499 TIGR03118 PEPCTERM_chp_1 conse 60.7 1.6E+02 0.0035 28.3 25.6 223 276-502 23-307 (336)
500 PF14779 BBS1: Ciliary BBSome 60.0 1.5E+02 0.0033 27.8 18.2 67 493-560 177-255 (257)
No 1
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2e-103 Score=730.48 Aligned_cols=520 Identities=57% Similarity=0.942 Sum_probs=430.2
Q ss_pred CCcCccchhhhhHHHHHhcCCceeeeccccccCCccCCCCCCCCCchhHHHHHHhhceeEeeeeeecCCCCCCccccccc
Q 008467 2 SSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLEMEANLTCQSDVDMDEDFSF 81 (564)
Q Consensus 2 ~~i~s~evn~Li~ryl~E~g~~~sa~~~~~E~~~~~~~~~~~~ip~~aLv~~~qkgl~y~~~e~~~~~~~~~~~~~~~~~ 81 (564)
.||||+||||||||||||+||.||||+|++|++|++++++...|||||||++|||||||+|+|.++ .+++...+++++.
T Consensus 1 msitsdEvN~LV~RYLqE~G~~hsaftf~~Et~is~~n~~~~~vp~gaLi~ivQKGLqY~E~E~~~-~~~~~v~d~~~e~ 79 (524)
T KOG0273|consen 1 MSITSDEVNFLVWRYLQESGFSHSAFTFGIETGISQSNINGSLVPPGALISIVQKGLQYVEAEKHL-NESGVVFDAPIES 79 (524)
T ss_pred CcccHHHHHHHHHHHHHHcCcceeeEEeeecccccccCCCccccChHHHHHHHHhhhhhhheeeee-ccCCccccccccc
Confidence 379999999999999999999999999999999999999889999999999999999999999999 6777777788889
Q ss_pred cccccccchhHHHHHHHHHHHhhccCCCCCccCccccCccccccchhhhhhHHHHHHHhhhhhhhcccCcccccCCCCCc
Q 008467 82 LQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEIEHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPD 161 (564)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (564)
+.+.+++.++++++++.....+...+.... +. +....++.. ....+..+..++ ..+
T Consensus 80 ~~~~d~v~~~~~ql~~~~~~e~~s~~~~~~----------------~~--~~~~~~~~~----s~s~~ag~~~~~--d~a 135 (524)
T KOG0273|consen 80 LSLEDLVMEDVVQLRQQAFREKLSEEQFCA----------------QL--KIAQDKESG----STSTPAGSISQR--DGA 135 (524)
T ss_pred cchhhhccccccccchhhhhhhccccchhh----------------hh--hhhhhhccC----CcCCCCCccccc--cch
Confidence 999999999888887432222111100000 00 000000000 000000000000 000
Q ss_pred cchhhhhhccccCCCCccccccCCCCCCCccccccCCccceeecCCceeEccCCccceEEEEECCCCC-EEEEEECCCcE
Q 008467 162 KEMLTVQEEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGS-LLASGSGDSTA 240 (564)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~~~-~lasgs~D~~i 240 (564)
..+.. ....++.....-....+++.+.. ..+||...+.+++ |..+|++|+|+|-.. +|++|+.|.++
T Consensus 136 ~~~er------~~n~eed~a~~I~~~~e~~~i~~-----~~~I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~a 203 (524)
T KOG0273|consen 136 KTGER------TSNGEEDKAMSIDVHTEPMEIDG-----GVEIPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTA 203 (524)
T ss_pred hhcch------hcccccCccccccccccceeecc-----cccccccceeecc-CCCceEEEecCchhhhhhhccCCccce
Confidence 00000 00000000000111223333332 3468888888888 999999999999755 99999999999
Q ss_pred EEEeCCCCCCCCCCCCCCceEEEEEeec---cccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCC
Q 008467 241 RIWTIADGTSNGGAQNGPLNVLVLKHVK---GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKG 317 (564)
Q Consensus 241 ~iW~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~ 317 (564)
|+|++....... ....++++.. +...+..++||+++|+.+|.+||+|++||.+|+|+..|.+..++..|++
T Consensus 204 ri~~l~e~~~~~------~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~Hkg 277 (524)
T KOG0273|consen 204 RIWNLLENSNIG------STQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKG 277 (524)
T ss_pred eeeeehhhcccc------chhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCC
Confidence 999987421111 1112344433 3444567899999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecC
Q 008467 318 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG 397 (564)
Q Consensus 318 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~ 397 (564)
||++|+|+..|+||++++.|+++.+||..++++.++|.+|..+.++++|.++..|++++.|+.|+||.++...|+.+|.|
T Consensus 278 PI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~G 357 (524)
T KOG0273|consen 278 PIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIG 357 (524)
T ss_pred ceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEE
Q 008467 398 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 477 (564)
Q Consensus 398 h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iw 477 (564)
|.++|+++.|+|.|.+|+|||+|++++||++....+.+.|.+|.+.|+++.|+|.+....+|+....+++++.|++|++|
T Consensus 358 H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lw 437 (524)
T KOG0273|consen 358 HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLW 437 (524)
T ss_pred ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcE
Q 008467 478 DVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTV 557 (564)
Q Consensus 478 d~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v 557 (564)
|+..+.+++++..|..||++++|||+|+|+|+|+.||.|+||+.+++++++.+.+.++|++|+|+.+|++|++|..++.+
T Consensus 438 dv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~v 517 (524)
T KOG0273|consen 438 DVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSV 517 (524)
T ss_pred EccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeC
Q 008467 558 CVLDFRM 564 (564)
Q Consensus 558 ~v~~~~~ 564 (564)
+|+|||+
T Consensus 518 cvldlr~ 524 (524)
T KOG0273|consen 518 CVLDLRK 524 (524)
T ss_pred eEEEecC
Confidence 9999996
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.9e-57 Score=408.73 Aligned_cols=325 Identities=30% Similarity=0.531 Sum_probs=295.9
Q ss_pred eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467 210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 289 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 289 (564)
..+.||..+|.|++|+|+|+.||||++|.++|+||+.+.... ..++ .|...|.|++|+|||+.
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~-------------~t~K----gH~~WVlcvawsPDgk~ 171 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL-------------FTCK----GHKNWVLCVAWSPDGKK 171 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc-------------eeec----CCccEEEEEEECCCcch
Confidence 457899999999999999999999999999999999875421 1222 35678999999999999
Q ss_pred EEEEeCCCeEEEEECC--CceeEeecCCCCCEEEEEeCC-----CCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeE
Q 008467 290 LATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNK-----KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 362 (564)
Q Consensus 290 l~sg~~dg~i~vw~~~--~~~~~~~~~h~~~V~~l~~~~-----~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 362 (564)
||+|+.||.|++||.. +..-..+.+|+..|++|+|.| ...+|+++|.||+|+|||+..+.++..+..|..++.
T Consensus 172 iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VT 251 (480)
T KOG0271|consen 172 IASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVT 251 (480)
T ss_pred hhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceE
Confidence 9999999999999953 455668999999999999976 567899999999999999999999999999999999
Q ss_pred EEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEEC-----------CCCC-------------------
Q 008467 363 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD-----------PTGS------------------- 412 (564)
Q Consensus 363 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~-----------~~~~------------------- 412 (564)
++.|-....+.+++.|++|++|+...++.++.++||...|+.++.+ |.++
T Consensus 252 CvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~ 331 (480)
T KOG0271|consen 252 CVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV 331 (480)
T ss_pred EEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998876 3333
Q ss_pred ------EEEEEeCCCcEEEEeCCC-CeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE
Q 008467 413 ------LLASCSDDVTAKIWNMKQ-DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL 485 (564)
Q Consensus 413 ------~las~s~dg~i~iwd~~~-~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 485 (564)
.+++||+|+++.+|+... .+++..+.+|...|..+.|+|++. ++||+|+|..|++||.++|+.+
T Consensus 332 ~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r---------~IASaSFDkSVkLW~g~tGk~l 402 (480)
T KOG0271|consen 332 LKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGR---------YIASASFDKSVKLWDGRTGKFL 402 (480)
T ss_pred hccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCcc---------EEEEeecccceeeeeCCCcchh
Confidence 499999999999999654 457888999999999999999986 8999999999999999999999
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC-CEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467 486 YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVL 560 (564)
Q Consensus 486 ~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~ 560 (564)
.++++|-.+|+.++||.|.++|++||.|.+++||++++.++...+.++. .|+.+.|+|||.++|.|..|+.+++|
T Consensus 403 asfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 403 ASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLW 478 (480)
T ss_pred hhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence 9999999999999999999999999999999999999999988888654 69999999999999999999988887
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-49 Score=360.05 Aligned_cols=288 Identities=32% Similarity=0.590 Sum_probs=255.1
Q ss_pred CceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-
Q 008467 207 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG- 285 (564)
Q Consensus 207 ~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~- 285 (564)
.+..+.++|...|.|++|+|||+.||||+.||+|++||..+|+..+. ...+|.+.|++++|.|
T Consensus 148 Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~----------------~l~gH~K~It~Lawep~ 211 (480)
T KOG0271|consen 148 TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR----------------ALRGHKKWITALAWEPL 211 (480)
T ss_pred CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc----------------cccCcccceeEEeeccc
Confidence 34578899999999999999999999999999999999888765432 1235678999999976
Q ss_pred ----CCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccC
Q 008467 286 ----EGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP 360 (564)
Q Consensus 286 ----~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~ 360 (564)
..++||+++.||.++|||+. +.....+.+|+.+|+|++|--+| +|++||.|++|++|+...|.+.+.+..|..-
T Consensus 212 hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahw 290 (480)
T KOG0271|consen 212 HLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHW 290 (480)
T ss_pred ccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchh
Confidence 57899999999999999986 45677899999999999998665 8999999999999999988887777776654
Q ss_pred eEEEEcC-------------C------------------------CceEEEEeCCCeEEEEEcCC-CceeeEecCCCcce
Q 008467 361 TLDVDWR-------------N------------------------NVSFATSSTDNMIYVCKIGE-NRPIKTFAGHQGEV 402 (564)
Q Consensus 361 ~~~~~~~-------------~------------------------~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~h~~~i 402 (564)
+..++.. . ...++++++|.++++|+-.. .+|+..+.||...|
T Consensus 291 vN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lV 370 (480)
T KOG0271|consen 291 VNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALV 370 (480)
T ss_pred eeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhe
Confidence 4333321 1 12589999999999998765 45899999999999
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC
Q 008467 403 NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG 482 (564)
Q Consensus 403 ~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 482 (564)
+.+.||||++++|++|.|..|++|+.++++++.+|++|-..||.++|+.+.+ +|+|||.|.++++|++++.
T Consensus 371 n~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR---------LlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 371 NHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR---------LLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred eeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc---------EEEEcCCCceEEEEEeeee
Confidence 9999999999999999999999999999999999999999999999998865 8999999999999999999
Q ss_pred eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467 483 KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 520 (564)
Q Consensus 483 ~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~ 520 (564)
++...+.+|.+.|+++.|+|||..+++|+.|..+++|.
T Consensus 442 Kl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 442 KLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999999999999999999995
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.5e-47 Score=350.54 Aligned_cols=281 Identities=26% Similarity=0.481 Sum_probs=256.1
Q ss_pred CCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC--CCEEE
Q 008467 214 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE--GTLLA 291 (564)
Q Consensus 214 ~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~--g~~l~ 291 (564)
|-+.+|..|.||++++.|||||-+|.+++|..++.. .+..+ .+|...|.++.|+|. +..+|
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-------------~~~~l----~gH~~~v~~~~fhP~~~~~~la 235 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-------------LLQTL----RGHTSRVGAAVFHPVDSDLNLA 235 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc-------------eeEEE----eccccceeeEEEccCCCcccee
Confidence 566889999999999999999999999999986542 11222 245678999999996 67899
Q ss_pred EEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCc
Q 008467 292 TGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 370 (564)
Q Consensus 292 sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (564)
||+.||++++|+.++ ..+..+.+|...|..++|+|+|++|+|+|.|.+.++||++++..
T Consensus 236 t~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-------------------- 295 (459)
T KOG0272|consen 236 TASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-------------------- 295 (459)
T ss_pred eeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh--------------------
Confidence 999999999999887 67778999999999999999999999999999999999988642
Q ss_pred eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEc
Q 008467 371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS 450 (564)
Q Consensus 371 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~ 450 (564)
+....||...|.+++|+|||.+++||+.|..-||||+++++++..+.+|.++|+++.|+
T Consensus 296 ---------------------lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fs 354 (459)
T KOG0272|consen 296 ---------------------LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFS 354 (459)
T ss_pred ---------------------hHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeEC
Confidence 22346899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 008467 451 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLKEGKIVKT 529 (564)
Q Consensus 451 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp-dg~~lasgs~dg~i~iw~~~~~~~~~~ 529 (564)
|+|. .|||||.|++++|||++..+.++++.+|..-|+.|.|+| .|++|+|+|.|++++||...++.++++
T Consensus 355 PNGy---------~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ks 425 (459)
T KOG0272|consen 355 PNGY---------HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKS 425 (459)
T ss_pred CCce---------EEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchh
Confidence 9984 799999999999999999999999999999999999999 689999999999999999999999999
Q ss_pred EecCC-CEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 530 YTGNG-GIFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 530 ~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
+.++. .|.++..+++|+.+++++.|.++.+|.
T Consensus 426 LaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 426 LAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99865 599999999999999999999999984
No 5
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.3e-47 Score=338.98 Aligned_cols=478 Identities=19% Similarity=0.295 Sum_probs=356.9
Q ss_pred CcCccchhhhhHHHHHhcCCceeeeccccccCCccCCCCCCCCCchhHHHHHHhhc--eeEeeeeeecCCCCCCcccccc
Q 008467 3 SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGL--QYLEMEANLTCQSDVDMDEDFS 80 (564)
Q Consensus 3 ~i~s~evn~Li~ryl~E~g~~~sa~~~~~E~~~~~~~~~~~~ip~~aLv~~~qkgl--~y~~~e~~~~~~~~~~~~~~~~ 80 (564)
-|.|.+|..||-+||+|+.+..+..+||+|++|+.+.+++- ..+|+.|..|. ..+..-..++.++....
T Consensus 4 eiessdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSv----d~Fv~dI~sG~WD~VL~~vqsLKLP~kkL~----- 74 (508)
T KOG0275|consen 4 EIESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSV----DGFVNDINSGHWDTVLKTVQSLKLPDKKLI----- 74 (508)
T ss_pred eeecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhH----HHHHHhcccCchHHHHHHHHhccCchhHHH-----
Confidence 37789999999999999999999999999999999998765 78999999887 45555555544444433
Q ss_pred ccccccccchhHHHHHHHHHHHhhccCCCCC---ccCccccCccccccch------hhh-hhHHHHHHHhhhhhhhcccC
Q 008467 81 FLQPMDLITKDVCELRQMVKEKKKNLNGDRD---KENDVDRGHEIEHGRV------KEK-ERLDREKERERDKERVENEK 150 (564)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~ 150 (564)
..++.+..++.|+++...++...++.+.+ +..++++....++-.+ .+. ....+|+++......+..+
T Consensus 75 --dLYEqivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~dssKEkrRa~IAQ~ls~E- 151 (508)
T KOG0275|consen 75 --DLYEQIVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGDSSKEKRRAVIAQALSGE- 151 (508)
T ss_pred --HHHHHHHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCcchHHHHHHHHHHHhcCc-
Confidence 36777788888888887777666676653 4445555544443211 111 1134555554443333222
Q ss_pred cccccCCCCCccchhhhhhccccCCCCccccccCCC-----CCCCccccccCCccceeecCCc-eeEccCCccceEEEEE
Q 008467 151 EPEKQHESHPDKEMLTVQEEKVNSKPEENGVLQGEK-----GPEPMDIATTSASESFEIPNSD-VTILEGHTSEVCACAW 224 (564)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~l~~h~~~V~~~~~ 224 (564)
....|+++.+..-.+..+++..+....+|.. +...+. ..+.-..|..- ..+-.|.++.+.|..|
T Consensus 152 -----V~VVppSRLlaLlGQaLKWQqHQGLLPPGt~iDLFRGkAA~K-----~~~Ee~~Pt~l~r~IKFg~KSh~EcA~F 221 (508)
T KOG0275|consen 152 -----VHVVPPSRLLALLGQALKWQQHQGLLPPGTTIDLFRGKAAMK-----DQEEERYPTQLARSIKFGQKSHVECARF 221 (508)
T ss_pred -----eEEcChHHHHHHHHHHhhhHhhcCCCCCCceeeeccchhhhh-----hhHhhhchHHhhhheecccccchhheee
Confidence 2234667777777777777766654444321 111110 00111123222 2344577788999999
Q ss_pred CCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEC
Q 008467 225 SPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST 304 (564)
Q Consensus 225 sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~ 304 (564)
||||.+|++||.||+|.+|+..+|+...... ++..........+|.|++||.|..++|+|+.||.|+||..
T Consensus 222 SPDgqyLvsgSvDGFiEVWny~~GKlrKDLk---------YQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 222 SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLK---------YQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred CCCCceEeeccccceeeeehhccchhhhhhh---------hhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 9999999999999999999998886433211 1222233445688999999999999999999999999986
Q ss_pred C-CceeEeec-CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEE
Q 008467 305 N-GDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIY 382 (564)
Q Consensus 305 ~-~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 382 (564)
. |.+...|. .|+..|+++.|+.++.++++++.|.++++.-+++|+
T Consensus 293 ~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK--------------------------------- 339 (508)
T KOG0275|consen 293 ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK--------------------------------- 339 (508)
T ss_pred ecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch---------------------------------
Confidence 4 55555554 899999999999999999999999999999877654
Q ss_pred EEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccccc--ccEEEEEEccCCCCCCCCC
Q 008467 383 VCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS--KEIYTIRWSPTGSGTNNPN 460 (564)
Q Consensus 383 ~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~--~~i~~i~~~p~~~~~~~~~ 460 (564)
.++.|+||.+.|+.+.|.+||..++++|.||+|++|+.++..|+.+|+... -+|.++..-|...
T Consensus 340 --------~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnp------ 405 (508)
T KOG0275|consen 340 --------CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNP------ 405 (508)
T ss_pred --------hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCC------
Confidence 456788999999999999999999999999999999999999998887543 4567776666542
Q ss_pred CcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC---CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC-CE
Q 008467 461 QQLILASASFDSTVKLWDVELGKLLYSLNGH---REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GI 536 (564)
Q Consensus 461 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h---~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~-~i 536 (564)
..++.|...++|.|.++. |+.+.++... .+..-+.+.||.|.|+.+.+.|+.++.|.+.+|++..++.-+. .+
T Consensus 406 --eh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdv 482 (508)
T KOG0275|consen 406 --EHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDV 482 (508)
T ss_pred --ceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccc
Confidence 246788899999999987 8888887532 2445667899999999999999999999999999998887543 57
Q ss_pred EEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 537 FEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 537 ~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
..++-+|.-+.||+-+.||.+.+|.
T Consensus 483 IGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 483 IGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccCcccchhhhhcccchhhhcC
Confidence 8899999999999999999988873
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.6e-43 Score=307.89 Aligned_cols=285 Identities=26% Similarity=0.463 Sum_probs=256.2
Q ss_pred eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
.++|+||...|.++.|++|.++|+|+|.||.+.|||..+... .+. ....+..|-+++|+|.|+
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK--------~ha---------ipl~s~WVMtCA~sPSg~ 110 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK--------VHA---------IPLPSSWVMTCAYSPSGN 110 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccc--------eeE---------EecCceeEEEEEECCCCC
Confidence 378999999999999999999999999999999999765421 111 112356799999999999
Q ss_pred EEEEEeCCCeEEEEECCC-------ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCe
Q 008467 289 LLATGSYDGQARIWSTNG-------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 361 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~~-------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 361 (564)
++|+|+.|+...||++.. .....+.+|++-+.++.|-+ ..+|+|+|.|.++.+||+++++....|..|.+.+
T Consensus 111 ~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV 189 (343)
T KOG0286|consen 111 FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDV 189 (343)
T ss_pred eEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccE
Confidence 999999999999998652 24456899999999999998 5689999999999999999999999999999999
Q ss_pred EEEEcCC--CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccc
Q 008467 362 LDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 439 (564)
Q Consensus 362 ~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~ 439 (564)
+.++..+ ...|++++.|+..++||++.+..++.|.||++.|++++|.|+|.-+++||+|++.|+||++..+.+..+..
T Consensus 190 ~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~ 269 (343)
T KOG0286|consen 190 MSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH 269 (343)
T ss_pred EEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc
Confidence 9988765 57899999999999999999999999999999999999999999999999999999999999888776653
Q ss_pred --ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008467 440 --HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMH 517 (564)
Q Consensus 440 --~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~ 517 (564)
-..+|++++|+..|+ +|.+|..|.++.+||.-.++.+..+.+|...|.++..+|||..+++||.|.+|+
T Consensus 270 ~~~~~gitSv~FS~SGR---------lLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lr 340 (343)
T KOG0286|consen 270 DSIICGITSVAFSKSGR---------LLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLR 340 (343)
T ss_pred CcccCCceeEEEccccc---------EEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHhee
Confidence 345789999999886 788899999999999999999999999999999999999999999999999999
Q ss_pred EEe
Q 008467 518 IWS 520 (564)
Q Consensus 518 iw~ 520 (564)
||.
T Consensus 341 iW~ 343 (343)
T KOG0286|consen 341 IWA 343 (343)
T ss_pred ecC
Confidence 994
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-41 Score=298.52 Aligned_cols=291 Identities=26% Similarity=0.462 Sum_probs=246.9
Q ss_pred eEccCCccceEEEEECCC-CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 210 TILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~-~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
-+|++|++.|..++-.+. ...|++++.|.++.+|++....... . ...+.+ .+|+..|..+..++||+
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~-------G-~~~r~~----~GHsH~v~dv~~s~dg~ 76 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKY-------G-VPVRRL----TGHSHFVSDVVLSSDGN 76 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcccc-------C-ceeeee----eccceEecceEEccCCc
Confidence 478999999999999997 5799999999999999987542110 0 012222 34677899999999999
Q ss_pred EEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467 289 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 367 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (564)
++++++.||.+|+||..+ +....|.+|...|.+++|++++.++++||.|+++++||........
T Consensus 77 ~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t--------------- 141 (315)
T KOG0279|consen 77 FALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYT--------------- 141 (315)
T ss_pred eEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEE---------------
Confidence 999999999999999875 6777899999999999999999999999999999999975432110
Q ss_pred CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCeeeeecccccccEE
Q 008467 368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 445 (564)
Q Consensus 368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~--~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~ 445 (564)
+ .-.+|.+.|+|+.|+|+ ..+|+++|.|+++++||+++.+..+.+.+|++.++
T Consensus 142 ------------------~-------~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~ 196 (315)
T KOG0279|consen 142 ------------------I-------HEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVN 196 (315)
T ss_pred ------------------E-------ecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEE
Confidence 0 00123678999999998 68899999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467 446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 525 (564)
Q Consensus 446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~ 525 (564)
.+.++|+|+ +.++|+.||.+.+||++.++.++++. |..+|.+++|+|+..+|+.+...+ |+|||+.++.
T Consensus 197 t~~vSpDGs---------lcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~ 265 (315)
T KOG0279|consen 197 TVTVSPDGS---------LCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATS-IKIWDLESKA 265 (315)
T ss_pred EEEECCCCC---------EEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCc-eEEEeccchh
Confidence 999999997 78999999999999999999998886 778999999999999998776554 9999999998
Q ss_pred EEEEEecC---------C-CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 526 IVKTYTGN---------G-GIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 526 ~~~~~~~~---------~-~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
++..+... . ...+++|++||..|.+|+.|+.|+||-++
T Consensus 266 ~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 266 VVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 87766421 1 24689999999999999999999999875
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.2e-40 Score=312.21 Aligned_cols=353 Identities=24% Similarity=0.421 Sum_probs=274.7
Q ss_pred eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCC----CCC---------------------------
Q 008467 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGA----QNG--------------------------- 257 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~----~~~--------------------------- 257 (564)
+.++..|...|+...|||.|.++|+|...|.+||||......+.+. ..+
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~ 131 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV 131 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence 4567889999999999999999999999999999997542111000 000
Q ss_pred -----------------CceEEEEE------------------------eeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467 258 -----------------PLNVLVLK------------------------HVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 296 (564)
Q Consensus 258 -----------------~~~~~~~~------------------------~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 296 (564)
.++...++ +++.....|++-|.|+.|+|||.++++++.|
T Consensus 132 F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsD 211 (603)
T KOG0318|consen 132 FLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSD 211 (603)
T ss_pred EEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCC
Confidence 00000010 1122334678889999999999999999999
Q ss_pred CeEEEEEC-CCceeEeec---CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeeccc---CeEEEEcCCC
Q 008467 297 GQARIWST-NGDLKCTLS---KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG---PTLDVDWRNN 369 (564)
Q Consensus 297 g~i~vw~~-~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~ 369 (564)
|.+.+||- .|.....+. +|++.|++|.|+||+++|+|+|.|++++|||+.+.++++++.+... ..+.+-|. +
T Consensus 212 gki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-k 290 (603)
T KOG0318|consen 212 GKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-K 290 (603)
T ss_pred ccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-C
Confidence 99999994 577777776 8999999999999999999999999999999999999998876543 34566787 6
Q ss_pred ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee-----------eecc
Q 008467 370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV-----------HDLR 438 (564)
Q Consensus 370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~-----------~~~~ 438 (564)
..+++.+.+|+|..++.....+.+++.||...|+++..+|++++|.||+.||.|.-|+..++..- ..+.
T Consensus 291 d~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~ 370 (603)
T KOG0318|consen 291 DHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMA 370 (603)
T ss_pred CeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEe
Confidence 77888999999999999988899999999999999999999999999999999999998655322 1122
Q ss_pred ccc-ccEEEEEEc-------------------------------cCCC------------------------------CC
Q 008467 439 EHS-KEIYTIRWS-------------------------------PTGS------------------------------GT 456 (564)
Q Consensus 439 ~~~-~~i~~i~~~-------------------------------p~~~------------------------------~~ 456 (564)
.+. +.+.++.|. +++. ..
T Consensus 371 ~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vA 450 (603)
T KOG0318|consen 371 ASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVA 450 (603)
T ss_pred ecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEE
Confidence 222 222222221 1100 00
Q ss_pred CCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE-EEEe-c
Q 008467 457 NNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV-KTYT-G 532 (564)
Q Consensus 457 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~-~~~~-~ 532 (564)
.+|+. ..++.|+.||.|+||.+..+.. ...+..|+.+|++++|||||.|||+|...+.|.+||+.+++.. ..+. +
T Consensus 451 v~~~~-~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FH 529 (603)
T KOG0318|consen 451 VSPDG-SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFH 529 (603)
T ss_pred EcCCC-CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeee
Confidence 01222 2578899999999999986543 3345679999999999999999999999999999999988752 2233 4
Q ss_pred CCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 533 NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 533 ~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
...|.+++|+|+.+++|+|+.|-.|.||++.
T Consensus 530 takI~~~aWsP~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 530 TAKINCVAWSPNNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred eeeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence 5679999999999999999999999999986
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.6e-40 Score=290.63 Aligned_cols=279 Identities=20% Similarity=0.375 Sum_probs=255.3
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc----
Q 008467 274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE---- 348 (564)
Q Consensus 274 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~---- 348 (564)
|...|.++.|++|.++|++++.||.+.|||.- ......++-...-|..++|+|.|+++++|+.|+...||++.+.
T Consensus 54 H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g 133 (343)
T KOG0286|consen 54 HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEG 133 (343)
T ss_pred cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccc
Confidence 45679999999999999999999999999964 3444556666778999999999999999999999999999865
Q ss_pred --ceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEEEeCCCcEEE
Q 008467 349 --EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKI 425 (564)
Q Consensus 349 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las~s~dg~i~i 425 (564)
...+.+..|.+-+.+..|.++..++++++|.+..+||+.+++.+..|.||.+.|.+++++| +++.++||+.|++.+|
T Consensus 134 ~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~akl 213 (343)
T KOG0286|consen 134 NVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKL 213 (343)
T ss_pred cceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceee
Confidence 3456688899999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred EeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC--CCCCEEEEEEcCC
Q 008467 426 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSPT 503 (564)
Q Consensus 426 wd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~i~~~~~spd 503 (564)
||++.+.+++.|.+|...|.+++|.|+|. -+++||.|++.|+||++..+.+..+.. -..+|++++||..
T Consensus 214 WD~R~~~c~qtF~ghesDINsv~ffP~G~---------afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S 284 (343)
T KOG0286|consen 214 WDVRSGQCVQTFEGHESDINSVRFFPSGD---------AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS 284 (343)
T ss_pred eeccCcceeEeecccccccceEEEccCCC---------eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc
Confidence 99999999999999999999999999986 589999999999999999888777653 2468999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEecCC-CEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 504 GEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 504 g~~lasgs~dg~i~iw~~~~~~~~~~~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
|++|.+|..|.++.+||.-.++.+..+.++. .|.+|.-+|||..|++|+.|.+++||.
T Consensus 285 GRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 285 GRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999999999998888765 699999999999999999999999984
No 10
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.7e-42 Score=318.30 Aligned_cols=248 Identities=30% Similarity=0.542 Sum_probs=222.3
Q ss_pred CceeEccCCccceEEEEECCC--CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEEC
Q 008467 207 SDVTILEGHTSEVCACAWSPA--GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 284 (564)
Q Consensus 207 ~~~~~l~~h~~~V~~~~~sp~--~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s 284 (564)
..+.+|+||+..|.++.|+|. +..||||+.||++++|++.+.... .. ..+|...|..++|+
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l-------------~~----l~gH~~RVs~VafH 270 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL-------------QD----LEGHLARVSRVAFH 270 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch-------------hh----hhcchhhheeeeec
Confidence 345789999999999999997 568999999999999998764321 11 22345679999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCc-eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEE
Q 008467 285 GEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 363 (564)
Q Consensus 285 ~~g~~l~sg~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 363 (564)
|+|++|+|+++|.+-|+||+..+ ......+|..+|++++|+++|..++||+.|..-+|||++++.
T Consensus 271 PsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr-------------- 336 (459)
T KOG0272|consen 271 PSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR-------------- 336 (459)
T ss_pred CCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCc--------------
Confidence 99999999999999999998743 444567999999999999999999999999999999999865
Q ss_pred EEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccccccc
Q 008467 364 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE 443 (564)
Q Consensus 364 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~ 443 (564)
.+..+.||..+|.+|+|+|+|-.|||||.|++++|||++....+..+.+|...
T Consensus 337 ---------------------------~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl 389 (459)
T KOG0272|consen 337 ---------------------------CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL 389 (459)
T ss_pred ---------------------------EEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch
Confidence 34567889999999999999999999999999999999999999999999999
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467 444 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 520 (564)
Q Consensus 444 i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~ 520 (564)
|..++|+|... .+|+|+|.|++++||..++..++.++.||.+.|.++.++|||.+|+|++.|.++++|.
T Consensus 390 VS~Vk~~p~~g--------~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 390 VSQVKYSPQEG--------YFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhheEecccCC--------eEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999432 4899999999999999999999999999999999999999999999999999999995
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-40 Score=298.62 Aligned_cols=297 Identities=31% Similarity=0.509 Sum_probs=262.2
Q ss_pred eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
...+.||..+|+.+-|+|+-.++++++.|++|++||..+++... .. .+|.+.|..++|+..|+
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~-------------~L----rGHt~sv~di~~~a~Gk 163 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER-------------SL----RGHTDSVFDISFDASGK 163 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh-------------hh----hccccceeEEEEecCcc
Confidence 45677899999999999999999999999999999998876421 12 23456699999999999
Q ss_pred EEEEEeCCCeEEEEECCCc--eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc
Q 008467 289 LLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 366 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 366 (564)
++++++.|=.+++|+.+.. ....+.+|.-.|.+++|-|.|.++++++.|.+|+.|++.++-+
T Consensus 164 ~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~c---------------- 227 (406)
T KOG0295|consen 164 YLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYC---------------- 227 (406)
T ss_pred EEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccccee----------------
Confidence 9999999999999998753 4456789999999999999999999999999999999988643
Q ss_pred CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEE
Q 008467 367 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 446 (564)
Q Consensus 367 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 446 (564)
+.+|.+|...|..++.+.||.++|+|+.|.++++|-+.++.+...++.|..+|-+
T Consensus 228 -------------------------v~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEc 282 (406)
T KOG0295|consen 228 -------------------------VKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVEC 282 (406)
T ss_pred -------------------------EEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEE
Confidence 4567788889999999999999999999999999999999888899999999999
Q ss_pred EEEccCCCCCC------CCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467 447 IRWSPTGSGTN------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 520 (564)
Q Consensus 447 i~~~p~~~~~~------~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~ 520 (564)
++|.|...... +.++..++.++|.|++||+||+.+|.++.++.+|...|..++|+|-|+||+++.+|+++++||
T Consensus 283 i~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwd 362 (406)
T KOG0295|consen 283 IAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWD 362 (406)
T ss_pred EEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEE
Confidence 99998754221 122335899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCC-EEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 521 LKEGKIVKTYTGNGG-IFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 521 ~~~~~~~~~~~~~~~-i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
++++.+++++..+.. ++.+.|+.+--++++|+-|-++.||.-|
T Consensus 363 l~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEcr 406 (406)
T KOG0295|consen 363 LKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 406 (406)
T ss_pred eccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeecC
Confidence 999999999876544 7899999999999999999999999754
No 12
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.3e-38 Score=288.93 Aligned_cols=333 Identities=23% Similarity=0.382 Sum_probs=283.8
Q ss_pred CCceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC
Q 008467 206 NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 285 (564)
Q Consensus 206 ~~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 285 (564)
...+..+.+|+.+|++++.+|+.+++||||.|..+.||++.++... ....+|...|+++.||.
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~-----------------~eltgHKDSVt~~~Fsh 116 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA-----------------GELTGHKDSVTCCSFSH 116 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce-----------------eEecCCCCceEEEEEcc
Confidence 4456788999999999999999999999999999999999876421 12245678899999999
Q ss_pred CCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEE
Q 008467 286 EGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 364 (564)
Q Consensus 286 ~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 364 (564)
+|.+||||+.+|.|+||... +.....+...-..|.=++|+|.+..|++|+.||.+.+|.+..+...+.+..|..++..-
T Consensus 117 dgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G 196 (399)
T KOG0296|consen 117 DGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCG 196 (399)
T ss_pred CceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccc
Confidence 99999999999999999975 44555665556677889999999999999999999999999988888899999888887
Q ss_pred EcCC-CceEEEEeCCCeEEEEEcCCCceeeEecCCC-cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecc----
Q 008467 365 DWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR---- 438 (564)
Q Consensus 365 ~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~---- 438 (564)
.+.+ ..+++++..|++|++|+..++.|+..+.+.. .+..++.++..+..+++|+.++.+.+-+..+++.+....
T Consensus 197 ~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~ 276 (399)
T KOG0296|consen 197 EFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVP 276 (399)
T ss_pred cccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCc
Confidence 7754 5678899999999999999999988877543 357889999999999999999999999998888887766
Q ss_pred ----cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCC
Q 008467 439 ----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK 514 (564)
Q Consensus 439 ----~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg 514 (564)
.+...+.++.+.|.... -.+.|.|+.||+|.|||+...+..+.+ .|..+|..+.|-+ ..+|++++.+|
T Consensus 277 ~l~~~~e~~~esve~~~~ss~------lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~g 348 (399)
T KOG0296|consen 277 ELKPSQEELDESVESIPSSSK------LPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACANG 348 (399)
T ss_pred cccccchhhhhhhhhcccccc------cchhhcccccceEEEEecccchhheec-cCCCceEEEEEcC-cchheeeccCc
Confidence 34445566666654332 126889999999999999876655544 4889999999998 78999999999
Q ss_pred cEEEEeCCCCeEEEEEecCC-CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 515 SMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 515 ~i~iw~~~~~~~~~~~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
.|+.||.++|.++.+|.++. .|++++.+|+++++++++.|++..||++.
T Consensus 349 ~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 349 KVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999864 79999999999999999999999999863
No 13
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.9e-40 Score=325.28 Aligned_cols=300 Identities=28% Similarity=0.498 Sum_probs=251.5
Q ss_pred CccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 008467 215 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 294 (564)
Q Consensus 215 h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~ 294 (564)
-...++|+.|++++++||-|-.|..|++|.+...+. +..+. .+| ...+-+++
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl--------------~~lk~-----------~~~---l~~~d~~s 428 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKL--------------KKLKD-----------ASD---LSNIDTES 428 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhh--------------ccccc-----------hhh---hccccccc
Confidence 345789999999999999999999999999864221 11110 000 01122333
Q ss_pred CCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC-CceE
Q 008467 295 YDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSF 372 (564)
Q Consensus 295 ~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 372 (564)
.|-.+.+-|.+ +....++.+|.+||++++|+|+.++|+++|.|+++|+|.+.+..+.-.+..|..|+.++.|.+ ...|
T Consensus 429 ad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYF 508 (707)
T KOG0263|consen 429 ADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYF 508 (707)
T ss_pred cchhhhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEE
Confidence 34345555544 334456899999999999999999999999999999999999999999999999999999865 5678
Q ss_pred EEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccC
Q 008467 373 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 452 (564)
Q Consensus 373 ~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~ 452 (564)
++++.|++.++|......|.+.|.||.+.|.|++|+|++.++|+||.|.++|+||..++..++.|.+|.++|.+++|+|.
T Consensus 509 atas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~ 588 (707)
T KOG0263|consen 509 ATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPC 588 (707)
T ss_pred EecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-------
Q 008467 453 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK------- 525 (564)
Q Consensus 453 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~------- 525 (564)
|. +|++|+.||.|++||+.+++.+..+.+|.+.|+++.||.||..||+||.|.+|++||+..-.
T Consensus 589 Gr---------~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~ 659 (707)
T KOG0263|consen 589 GR---------YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGH 659 (707)
T ss_pred Cc---------eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccc
Confidence 86 89999999999999999999999999999999999999999999999999999999986421
Q ss_pred -----------------EEEEEec-CCCEEEEEEccCCCEEEEE
Q 008467 526 -----------------IVKTYTG-NGGIFEVCWNKEGDKIAAC 551 (564)
Q Consensus 526 -----------------~~~~~~~-~~~i~~~~w~~~g~~la~~ 551 (564)
++.+|.. ...+..|.|..-...|++|
T Consensus 660 ~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 660 ISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred cccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 2333332 3456777787766555554
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.3e-37 Score=304.25 Aligned_cols=330 Identities=24% Similarity=0.426 Sum_probs=278.6
Q ss_pred eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467 210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 289 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 289 (564)
....||...|.++.|+.|.++|++||.|.++|||.+...+.. .. ....+|...|-..-|..+...
T Consensus 139 r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~-----------~~----~~l~gHkd~VvacfF~~~~~~ 203 (893)
T KOG0291|consen 139 RTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL-----------FT----YALNGHKDYVVACFFGANSLD 203 (893)
T ss_pred eeecCCccceeEEEeccCCceEEeccccceEEEEEecccccc-----------ce----EeccCCCcceEEEEeccCcce
Confidence 567899999999999999999999999999999998643210 01 123456778999999999999
Q ss_pred EEEEeCCCeEEEEECC------------------------Cce-----------eEeecCCCCCEEEEEeCCCCCEEEEe
Q 008467 290 LATGSYDGQARIWSTN------------------------GDL-----------KCTLSKHKGPIFSLKWNKKGDYLLTG 334 (564)
Q Consensus 290 l~sg~~dg~i~vw~~~------------------------~~~-----------~~~~~~h~~~V~~l~~~~~~~~l~s~ 334 (564)
+.+-+.||.+.+|..+ +.. +.-+......|++.+|++..+.|++|
T Consensus 204 l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvg 283 (893)
T KOG0291|consen 204 LYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVG 283 (893)
T ss_pred EEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEE
Confidence 9999999999999644 111 11223334789999999999999999
Q ss_pred eCCCcEEEEECCCcceeEEEeecccCeEEEEcC--CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC
Q 008467 335 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS 412 (564)
Q Consensus 335 s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~ 412 (564)
-..|...+|.+....+++.+.....++..+.|. .+...+.|+.=|.+.||......-+....||...++|++++|||+
T Consensus 284 FssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq 363 (893)
T KOG0291|consen 284 FSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQ 363 (893)
T ss_pred ecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCc
Confidence 999999999999999999988888888888886 444444555668999999999888888899999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC------------
Q 008467 413 LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE------------ 480 (564)
Q Consensus 413 ~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~------------ 480 (564)
++|||++||.|+|||..++-|..+|..|+..|+.+.|+..+. .++++|.||+||.||+.
T Consensus 364 ~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~---------~llssSLDGtVRAwDlkRYrNfRTft~P~ 434 (893)
T KOG0291|consen 364 LIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN---------VLLSSSLDGTVRAWDLKRYRNFRTFTSPE 434 (893)
T ss_pred EEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCC---------EEEEeecCCeEEeeeecccceeeeecCCC
Confidence 999999999999999999999999999999999999998875 56777777777777753
Q ss_pred --------------------------------CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eEE
Q 008467 481 --------------------------------LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG-KIV 527 (564)
Q Consensus 481 --------------------------------~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~-~~~ 527 (564)
+|+.+-.+.||.+||.+++|+|+|..||+||.|.+|++|++-.. ..+
T Consensus 435 p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~v 514 (893)
T KOG0291|consen 435 PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTV 514 (893)
T ss_pred ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCcee
Confidence 34444445689999999999999999999999999999998543 356
Q ss_pred EEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 528 KTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 528 ~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
.+++....+.+++|+|||+.||++..||.+.+||..
T Consensus 515 Etl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 515 ETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred eeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence 677777889999999999999999999999999974
No 15
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.1e-37 Score=270.47 Aligned_cols=289 Identities=27% Similarity=0.509 Sum_probs=236.4
Q ss_pred eeEccCCccceEEEEECCC-CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467 209 VTILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 287 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~-~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 287 (564)
...+.+|++.|..++|||- |.+|||||.|..||||+...+. .+..+... ...|.+.|.+++|+|.|
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~-----------s~~ck~vl--d~~hkrsVRsvAwsp~g 73 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD-----------SWTCKTVL--DDGHKRSVRSVAWSPHG 73 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC-----------cEEEEEec--cccchheeeeeeecCCC
Confidence 4578899999999999998 8999999999999999976421 12223222 22567889999999999
Q ss_pred CEEEEEeCCCeEEEEECCC---ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEE
Q 008467 288 TLLATGSYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 364 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 364 (564)
++|++|++|.++.||...+ ....++.+|...|.+++|+++|++|++|+.|++|.||.+..+.-
T Consensus 74 ~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE-------------- 139 (312)
T KOG0645|consen 74 RYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE-------------- 139 (312)
T ss_pred cEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc--------------
Confidence 9999999999999997653 35668899999999999999999999999999999998753321
Q ss_pred EcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC---CCeeeeeccccc
Q 008467 365 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK---QDKYVHDLREHS 441 (564)
Q Consensus 365 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~---~~~~~~~~~~~~ 441 (564)
-..+..+.+|+..|..+.|+|...+|+|+|.|.+|++|+-. ...++.++.+|.
T Consensus 140 ------------------------fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~ 195 (312)
T KOG0645|consen 140 ------------------------FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHE 195 (312)
T ss_pred ------------------------EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCcc
Confidence 11345678899999999999999999999999999999865 446788999999
Q ss_pred ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467 442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 521 (564)
Q Consensus 442 ~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~ 521 (564)
..|.++.|.|.|. .|++++.|++|+||-..+.-. .-|..+++.++|. ...||+|+.|+.|++|.-
T Consensus 196 ~TVW~~~F~~~G~---------rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~ 260 (312)
T KOG0645|consen 196 NTVWSLAFDNIGS---------RLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD--NGVIASGGGDDAIRLFKE 260 (312)
T ss_pred ceEEEEEecCCCc---------eEEEecCCcceEeeeeccCcc----hhcccceEeeeec--ccceEeccCCCEEEEEEe
Confidence 9999999999885 589999999999997552211 2377899999998 568999999999999987
Q ss_pred CCCe------EEE--EEecCCCEEEEEEccC-CCEEEEEEcCCcEEEEEee
Q 008467 522 KEGK------IVK--TYTGNGGIFEVCWNKE-GDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 522 ~~~~------~~~--~~~~~~~i~~~~w~~~-g~~la~~~~~~~v~v~~~~ 563 (564)
..+- ++. ...+...|+++.|+|. .++|++|+.||.|.+|.+.
T Consensus 261 s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 261 SDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 6431 111 1112346999999995 6899999999999999874
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.3e-40 Score=300.82 Aligned_cols=278 Identities=25% Similarity=0.481 Sum_probs=247.8
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc-eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE
Q 008467 275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 353 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 353 (564)
...|..+.|.|+|+.|++|+..|...+|+...- ....+..|..+|.++.|+++|.+++||+.+|.|++|+..-..++..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~ 175 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII 175 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh
Confidence 356999999999999999999999999986432 2235678999999999999999999999999999999876555544
Q ss_pred EeecccCeEEEEcC-CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467 354 FEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 432 (564)
Q Consensus 354 ~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~ 432 (564)
...|...+.++.+. ++..|++|+.|++|.+|+....++-..++||.-.|.|++|+|...+||+||.|..|++||.+++.
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~ 255 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS 255 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc
Confidence 45555788888885 67899999999999999999988888999999999999999999999999999999999999999
Q ss_pred eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCC-CCEEEEEe
Q 008467 433 YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT-GEYLASGS 511 (564)
Q Consensus 433 ~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spd-g~~lasgs 511 (564)
++.++..|...|..+.|+|++. +|+++|.|..++++|+++.+.++++++|...|+++.|+|- ..+|++|+
T Consensus 256 cl~tlh~HKntVl~~~f~~n~N---------~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg 326 (464)
T KOG0284|consen 256 CLATLHGHKNTVLAVKFNPNGN---------WLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGG 326 (464)
T ss_pred hhhhhhhccceEEEEEEcCCCC---------eeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeecc
Confidence 9999999999999999999874 8999999999999999988889999999999999999995 46888999
Q ss_pred CCCcEEEEeCCCCeEEEEE--ecCCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 512 LDKSMHIWSLKEGKIVKTY--TGNGGIFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 512 ~dg~i~iw~~~~~~~~~~~--~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
.||.|..|.+...+.+... ...+.|++++|+|-|-.||+|+.|.+++.|.
T Consensus 327 ~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 327 SDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred CCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999999844444333 3456799999999999999999999999984
No 17
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.3e-38 Score=310.03 Aligned_cols=337 Identities=28% Similarity=0.510 Sum_probs=272.6
Q ss_pred ceeecCCc-eeEccC-CccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCe
Q 008467 201 SFEIPNSD-VTILEG-HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV 278 (564)
Q Consensus 201 ~~~~~~~~-~~~l~~-h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 278 (564)
.+.+|... +..++. |++||..++|+|.+.+||+||.|+.+++||+..+.+ ...+ .++.+.|
T Consensus 88 v~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~-------------th~f----kG~gGvV 150 (775)
T KOG0319|consen 88 VWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYC-------------THSF----KGHGGVV 150 (775)
T ss_pred EEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEE-------------EEEe----cCCCceE
Confidence 34444432 345566 999999999999999999999999999999976421 2222 2446789
Q ss_pred EEEEECCCCC--EEEEEeCCCeEEEEECCCc--eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE-
Q 008467 279 TTLDWNGEGT--LLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ- 353 (564)
Q Consensus 279 ~~l~~s~~g~--~l~sg~~dg~i~vw~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~- 353 (564)
.++.|+|+-+ +|++|+.|+.+++||.... +...+..|.+.|+++.|++++..+++++.|+.+.+||+..-+....
T Consensus 151 ssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~l 230 (775)
T KOG0319|consen 151 SSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTL 230 (775)
T ss_pred EEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhhee
Confidence 9999999764 5899999999999998733 2456789999999999999999999999999999999743211000
Q ss_pred ----------------------------------Ee--------------------------------------------
Q 008467 354 ----------------------------------FE-------------------------------------------- 355 (564)
Q Consensus 354 ----------------------------------~~-------------------------------------------- 355 (564)
+.
T Consensus 231 p~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~ 310 (775)
T KOG0319|consen 231 PLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDE 310 (775)
T ss_pred chhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEc
Confidence 00
Q ss_pred ----------------------------------------------------ecccCeEEEE-cCCCceEEEEeCCCeEE
Q 008467 356 ----------------------------------------------------FHSGPTLDVD-WRNNVSFATSSTDNMIY 382 (564)
Q Consensus 356 ----------------------------------------------------~~~~~~~~~~-~~~~~~~~~~~~d~~i~ 382 (564)
.|...+++++ |..+..+++++.|+++.
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svi 390 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVI 390 (775)
T ss_pred cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEE
Confidence 0000111222 33334578899999999
Q ss_pred EEEcCCC----ceeeEecCCCcceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCee-----e----eecccccccEEEEE
Q 008467 383 VCKIGEN----RPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKY-----V----HDLREHSKEIYTIR 448 (564)
Q Consensus 383 ~~~~~~~----~~~~~~~~h~~~i~~v~~~~~~-~~las~s~dg~i~iwd~~~~~~-----~----~~~~~~~~~i~~i~ 448 (564)
+|.+.++ .++....||++.|.+++++..+ .+|+++|.|+++++|++...+. + .....|.+.|.+++
T Consensus 391 lWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Va 470 (775)
T KOG0319|consen 391 LWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVA 470 (775)
T ss_pred EEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceE
Confidence 9988443 2566678999999999997654 6899999999999999875221 1 13457999999999
Q ss_pred EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 008467 449 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 528 (564)
Q Consensus 449 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~ 528 (564)
.+|+.. ++||||.|.+.+||+++....+.++.||+..|.++.|+|..+.|||+|.|++|+||.+.+..+++
T Consensus 471 ia~ndk---------LiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClk 541 (775)
T KOG0319|consen 471 IAPNDK---------LIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLK 541 (775)
T ss_pred ecCCCc---------eEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeee
Confidence 999865 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCC-CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 529 TYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 529 ~~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
++.++. .|...+|-.+|+.|.+|.+||-+.|||++
T Consensus 542 T~eGH~~aVlra~F~~~~~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 542 TFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK 577 (775)
T ss_pred eecCccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence 999765 58999999999999999999999999986
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-36 Score=298.65 Aligned_cols=327 Identities=24% Similarity=0.447 Sum_probs=277.6
Q ss_pred eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467 210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 289 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 289 (564)
..+......|+|++|||...+||+|-..|...+|.+++-..+ ... ......|.+++|+..|.+
T Consensus 259 ~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~li-------------h~L----Sis~~~I~t~~~N~tGDW 321 (893)
T KOG0291|consen 259 HYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLI-------------HSL----SISDQKILTVSFNSTGDW 321 (893)
T ss_pred eeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEE-------------EEe----ecccceeeEEEecccCCE
Confidence 344445578999999999999999999999999998753211 111 112356999999999999
Q ss_pred EEEEeCC-CeEEEEECCCc-eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467 290 LATGSYD-GQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 367 (564)
Q Consensus 290 l~sg~~d-g~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (564)
||.|+.. |.+-||+.... .+...++|-..+.+++++|||+++++|+.||.|+|||..++-|..+|.-|...+..+.|.
T Consensus 322 iA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~ 401 (893)
T KOG0291|consen 322 IAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFT 401 (893)
T ss_pred EEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEE
Confidence 9998875 89999987643 445678999999999999999999999999999999999999999999999999999996
Q ss_pred C-CceEEEEeCCCeEEEEEcCCCceeeEecCCCc-ceEEEEECCCCCEEEEEeCCC-cEEEEeCCCCeeeeecccccccE
Q 008467 368 N-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDV-TAKIWNMKQDKYVHDLREHSKEI 444 (564)
Q Consensus 368 ~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~-~i~~v~~~~~~~~las~s~dg-~i~iwd~~~~~~~~~~~~~~~~i 444 (564)
. ...+++++.||+|+.||+..-+..++|..... ...|++.+|.|.++..|+.|. .|.+|++++++.+..+.+|.++|
T Consensus 402 ~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPV 481 (893)
T KOG0291|consen 402 ARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPV 481 (893)
T ss_pred ecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcc
Confidence 4 55678889999999999998888888876543 578999999999998888876 69999999999999999999999
Q ss_pred EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 008467 445 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 523 (564)
Q Consensus 445 ~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~ 523 (564)
.+++|+|.+. .|+|+|.|.+||+||+-... .+-++. +...++.++|+|||+-||+++.||.|.+||.+.
T Consensus 482 s~l~f~~~~~---------~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 482 SGLSFSPDGS---------LLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred eeeEEccccC---------eEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence 9999999986 79999999999999987543 334444 566799999999999999999999999999988
Q ss_pred CeEEEEEec---------------------CCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 524 GKIVKTYTG---------------------NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 524 ~~~~~~~~~---------------------~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
+..+.+.++ ....+.+++++||+.+.+|+....||+||++
T Consensus 552 ~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 552 AVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVP 612 (893)
T ss_pred ceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECc
Confidence 766644432 1346789999999999999999999999986
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7e-38 Score=283.04 Aligned_cols=289 Identities=26% Similarity=0.470 Sum_probs=251.8
Q ss_pred ecCCceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEE
Q 008467 204 IPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 283 (564)
Q Consensus 204 ~~~~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~ 283 (564)
.|-...+++.||.+.|.|+++.|-..+|+||+.|++++|||+.+++... ...++-..|..+++
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl-----------------tltGhi~~vr~vav 201 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL-----------------TLTGHIETVRGVAV 201 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE-----------------eecchhheeeeeee
Confidence 3444457889999999999999999999999999999999999875211 11234466899999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeE
Q 008467 284 NGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 362 (564)
Q Consensus 284 s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 362 (564)
|+-..|+++++.|+.|+.||+.. +....+.+|-+.|++|+.+|.-..|++|+.|.++++||+++..
T Consensus 202 S~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~------------- 268 (460)
T KOG0285|consen 202 SKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA------------- 268 (460)
T ss_pred cccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-------------
Confidence 99999999999999999999864 5566788999999999999999999999999999999998743
Q ss_pred EEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccc
Q 008467 363 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK 442 (564)
Q Consensus 363 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~ 442 (564)
.+.++.||.+.|..+.+.|....++|||.|++|++||+..++....+..|..
T Consensus 269 ----------------------------~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk 320 (460)
T KOG0285|consen 269 ----------------------------SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK 320 (460)
T ss_pred ----------------------------eEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccc
Confidence 4567889999999999999888999999999999999999999999999999
Q ss_pred cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 008467 443 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 522 (564)
Q Consensus 443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~ 522 (564)
.+.+++.+|... .+||+|.| .|+-|++..|..+..+.+|...|++++.+.|| ++++|++.|.|.+||.+
T Consensus 321 svral~lhP~e~---------~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 321 SVRALCLHPKEN---------LFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWK 389 (460)
T ss_pred eeeEEecCCchh---------hhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecC
Confidence 999999998753 68888876 69999999999999999999999999998775 56789999999999999
Q ss_pred CCeEEEEE---------ecCCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 523 EGKIVKTY---------TGNGGIFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 523 ~~~~~~~~---------~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
+|...+.. ....+|+..||+..|.+|.+|..|++|.+|.
T Consensus 390 sg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 390 SGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred cCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 88543332 3356799999999999999999999999984
No 20
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9e-39 Score=293.65 Aligned_cols=282 Identities=26% Similarity=0.480 Sum_probs=250.9
Q ss_pred ccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 008467 216 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 295 (564)
Q Consensus 216 ~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~ 295 (564)
+.+|..+.|.|+|+.|++|+..|...+|+...- .+......|..+|.++.|+++|.+++||+.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f-----------------nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~ 158 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF-----------------NFETILQAHDSPVRTMKWSHNGTWMISGDK 158 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCcee-----------------eHHHHhhhhcccceeEEEccCCCEEEEcCC
Confidence 457999999999999999999999999986321 112223456789999999999999999999
Q ss_pred CCeEEEEECCCceeEeecCCC-CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCc-eEE
Q 008467 296 DGQARIWSTNGDLKCTLSKHK-GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFA 373 (564)
Q Consensus 296 dg~i~vw~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 373 (564)
+|.|++|+.+-..+..+..|. ..|.+++|+|+...|++||.||+|+|||....+-...+..|.-.+.+++|++.. .++
T Consensus 159 gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLia 238 (464)
T KOG0284|consen 159 GGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIA 238 (464)
T ss_pred CceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeE
Confidence 999999998877666666655 899999999999999999999999999998877777788999999999998765 567
Q ss_pred EEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCC
Q 008467 374 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 453 (564)
Q Consensus 374 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~ 453 (564)
+++.|+.|.+||-+++.++.++.+|...|..+.|+|++++|+|+|.|..++++|+++.+.+..+++|...++++.|+|..
T Consensus 239 sgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~ 318 (464)
T KOG0284|consen 239 SGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLN 318 (464)
T ss_pred EccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccc
Confidence 88999999999999999999999999999999999999999999999999999999888899999999999999999976
Q ss_pred CCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE-eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 008467 454 SGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 522 (564)
Q Consensus 454 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~ 522 (564)
. .+|.+|+.||.|..|.+...+.+..+ .+|...|++++|+|-|..||+|+.|.++++|...
T Consensus 319 ~--------~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 319 E--------SLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred c--------cceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 4 37999999999999999855555544 5789999999999999999999999999999864
No 21
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-37 Score=269.14 Aligned_cols=245 Identities=29% Similarity=0.508 Sum_probs=209.6
Q ss_pred eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
++.+.||...|..++.+++|++.++||.|+++|+||+.+++. .+.+ .+|.++|++++|++|.+
T Consensus 56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~-------------t~~f----~GH~~dVlsva~s~dn~ 118 (315)
T KOG0279|consen 56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGES-------------TRRF----VGHTKDVLSVAFSTDNR 118 (315)
T ss_pred eeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcE-------------EEEE----EecCCceEEEEecCCCc
Confidence 567899999999999999999999999999999999987642 1222 24578999999999999
Q ss_pred EEEEEeCCCeEEEEECCCceeEeecCC--CCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEE
Q 008467 289 LLATGSYDGQARIWSTNGDLKCTLSKH--KGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 364 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~~~~~~~~~~h--~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 364 (564)
.+++|+.|.+|++|++-|.++.++..+ ++-|.+++|+|+ ..+|+++|.|++|++||+++.+..
T Consensus 119 qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~------------- 185 (315)
T KOG0279|consen 119 QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR------------- 185 (315)
T ss_pred eeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh-------------
Confidence 999999999999999999888877655 788999999998 678999999999999999875432
Q ss_pred EcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccE
Q 008467 365 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI 444 (564)
Q Consensus 365 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i 444 (564)
..|.||++.++.+++||||.++++|+.||.+.+||++.++.+..+ .|...|
T Consensus 186 ----------------------------~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~v 236 (315)
T KOG0279|consen 186 ----------------------------TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIV 236 (315)
T ss_pred ----------------------------hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCeE
Confidence 356789999999999999999999999999999999999987765 577899
Q ss_pred EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC---------CCCEEEEEEcCCCCEEEEEeCCCc
Q 008467 445 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH---------REPVYSLAFSPTGEYLASGSLDKS 515 (564)
Q Consensus 445 ~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h---------~~~i~~~~~spdg~~lasgs~dg~ 515 (564)
.+++|+|+. +.|+. ..+..|+|||++++.++.+++.. .....+++||+||..|.+|-.|+.
T Consensus 237 ~sl~fspnr---------ywL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~ 306 (315)
T KOG0279|consen 237 NSLCFSPNR---------YWLCA-ATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV 306 (315)
T ss_pred eeEEecCCc---------eeEee-ccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence 999999975 24544 44566999999999888766421 123567899999999999999999
Q ss_pred EEEEeCC
Q 008467 516 MHIWSLK 522 (564)
Q Consensus 516 i~iw~~~ 522 (564)
|++|.+.
T Consensus 307 irv~qv~ 313 (315)
T KOG0279|consen 307 IRVWQVA 313 (315)
T ss_pred EEEEEee
Confidence 9999875
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.6e-36 Score=260.35 Aligned_cols=278 Identities=26% Similarity=0.470 Sum_probs=238.6
Q ss_pred CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC--
Q 008467 229 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-- 306 (564)
Q Consensus 229 ~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-- 306 (564)
-+|+|+|.|.+||+|...+|.+..+ +++ ....|..+...|++.+||.|+. -.||+||++.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rT----------iqh-------~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n 72 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRT----------IQH-------PDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN 72 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEE----------Eec-------CccceeeEEEcCCcchhhhccC-CeeEEEEccCCC
Confidence 4799999999999999988865322 111 2467999999999999998875 6899999763
Q ss_pred -ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC-CceEEEEeCCCeEEEE
Q 008467 307 -DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVC 384 (564)
Q Consensus 307 -~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~ 384 (564)
..+.++.+|+..|+++.|..+|+++++||.||+++|||++...+.+.|... .++.++...+ ...++++..+|.|++|
T Consensus 73 p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~vvlhpnQteLis~dqsg~irvW 151 (311)
T KOG0315|consen 73 PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNTVVLHPNQTELISGDQSGNIRVW 151 (311)
T ss_pred CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC-CCcceEEecCCcceEEeecCCCcEEEE
Confidence 367899999999999999999999999999999999999997777766655 7788877754 4678999999999999
Q ss_pred EcCCCceeeEec-CCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC------eeeeecccccccEEEEEEccCCCCCC
Q 008467 385 KIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD------KYVHDLREHSKEIYTIRWSPTGSGTN 457 (564)
Q Consensus 385 ~~~~~~~~~~~~-~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~------~~~~~~~~~~~~i~~i~~~p~~~~~~ 457 (564)
|+.+......+. ...-.|.++...|||++++.+...|...+|++-+. .++..+++|.+-+....++|++.
T Consensus 152 Dl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k--- 228 (311)
T KOG0315|consen 152 DLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK--- 228 (311)
T ss_pred EccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc---
Confidence 999876544443 33457999999999999999999999999998654 35677889999999999999986
Q ss_pred CCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC
Q 008467 458 NPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG 534 (564)
Q Consensus 458 ~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~ 534 (564)
+||++|.|.+++||+.+.. +.-..+.+|...+...+||.||+||+||+.|+.+++|++..++.++.|.++.
T Consensus 229 ------~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~ 300 (311)
T KOG0315|consen 229 ------YLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHH 300 (311)
T ss_pred ------EEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcc
Confidence 8999999999999999877 5556788999999999999999999999999999999999999999998754
No 23
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-35 Score=278.51 Aligned_cols=353 Identities=23% Similarity=0.354 Sum_probs=266.0
Q ss_pred CCCCccccccCCccce---eecC-CceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEE
Q 008467 187 GPEPMDIATTSASESF---EIPN-SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVL 262 (564)
Q Consensus 187 ~~~~~~~~~~~~~~~~---~~~~-~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~ 262 (564)
+..|+.+.+.+..... +=|+ .....++.|..-|+|+.|+|||+++||.|.||++.|||=.++....
T Consensus 157 psRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg---------- 226 (603)
T KOG0318|consen 157 PSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVG---------- 226 (603)
T ss_pred CCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEE----------
Confidence 3345555554443322 2233 2235678899999999999999999999999999999966654221
Q ss_pred EEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc-----------------------------------
Q 008467 263 VLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD----------------------------------- 307 (564)
Q Consensus 263 ~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~----------------------------------- 307 (564)
.+. ....|.+.|.+++|+||++.++|++.|.+++|||+...
T Consensus 227 ---~l~-~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~i 302 (603)
T KOG0318|consen 227 ---ELE-DSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTI 302 (603)
T ss_pred ---Eec-CCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEE
Confidence 111 13456788999999999999999999999999985311
Q ss_pred ---------eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE-eecccCeEEEEcCCCceEEEEeC
Q 008467 308 ---------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF-EFHSGPTLDVDWRNNVSFATSST 377 (564)
Q Consensus 308 ---------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 377 (564)
....+.+|..+|++|..+|++++|++|+.||.|.-||..++..-+.. ..|...+..+.-.....+.+++.
T Consensus 303 n~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~ 382 (603)
T KOG0318|consen 303 NYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGW 382 (603)
T ss_pred EEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEec
Confidence 01234589999999999999999999999999999999877644332 45666666666666566777777
Q ss_pred CCeEEEEEcCCC------------ce-------------------eeEecCCC--------cceEEEEECCCCCEEEEEe
Q 008467 378 DNMIYVCKIGEN------------RP-------------------IKTFAGHQ--------GEVNCVKWDPTGSLLASCS 418 (564)
Q Consensus 378 d~~i~~~~~~~~------------~~-------------------~~~~~~h~--------~~i~~v~~~~~~~~las~s 418 (564)
|.++++.++..+ +| +..++.+. -...+++++|+++.+|.|+
T Consensus 383 Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG 462 (603)
T KOG0318|consen 383 DDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG 462 (603)
T ss_pred CCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEec
Confidence 777777655321 11 11122222 1356899999999999999
Q ss_pred CCCcEEEEeCCCCeee--eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE-EEeCCCCCE
Q 008467 419 DDVTAKIWNMKQDKYV--HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY-SLNGHREPV 495 (564)
Q Consensus 419 ~dg~i~iwd~~~~~~~--~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~h~~~i 495 (564)
.|+.++||.+...... .....|.++|++++|+|++. +||+|...+.|.+||+.+.+... .+.-|...|
T Consensus 463 ~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~---------yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI 533 (603)
T KOG0318|consen 463 QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGA---------YLAAGDASRKVVLYDVASREVKTNRWAFHTAKI 533 (603)
T ss_pred ccceEEEEEecCCcccceeeeecccCCceEEEECCCCc---------EEEEeccCCcEEEEEcccCceecceeeeeeeeE
Confidence 9999999999876543 23557999999999999986 89999999999999999877633 344489999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEE-ecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 496 YSLAFSPTGEYLASGSLDKSMHIWSLKEGK-IVKTY-TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 496 ~~~~~spdg~~lasgs~dg~i~iw~~~~~~-~~~~~-~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
++++|||+..++||||.|-.|.||+++.-. .+..- .+..+++.+.|-.+. .|++.+.|..|++|++.
T Consensus 534 ~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~-tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 534 NCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDES-TVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCc-eEEeccCcceeEEeccc
Confidence 999999999999999999999999997643 22221 234569999996555 55555689999999974
No 24
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-36 Score=299.13 Aligned_cols=343 Identities=22% Similarity=0.338 Sum_probs=283.3
Q ss_pred eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCC--------------------------C-CCCceE
Q 008467 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGA--------------------------Q-NGPLNV 261 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~--------------------------~-~~~~~~ 261 (564)
..++.+|.+.|++++|++|+..++++|.|..+.|||+.+.+..... . .+....
T Consensus 185 l~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~ 264 (775)
T KOG0319|consen 185 LHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQY 264 (775)
T ss_pred HHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEE
Confidence 5677899999999999999999999999999999998532110000 0 000000
Q ss_pred ----------------------------------------EEEE-----eeccccccCCCCeEEEEE-CCCCCEEEEEeC
Q 008467 262 ----------------------------------------LVLK-----HVKGRTNEKSKDVTTLDW-NGEGTLLATGSY 295 (564)
Q Consensus 262 ----------------------------------------~~~~-----~~~~~~~~~~~~V~~l~~-s~~g~~l~sg~~ 295 (564)
+.+. .......+.+..|..++| .|+.++||.++.
T Consensus 265 ~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATN 344 (775)
T KOG0319|consen 265 WDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATN 344 (775)
T ss_pred EecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeC
Confidence 0000 001112234566778865 567899999999
Q ss_pred CCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc----ceeEEEeecccCeEEEEcC--CC
Q 008467 296 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE----EWKQQFEFHSGPTLDVDWR--NN 369 (564)
Q Consensus 296 dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~--~~ 369 (564)
.+.+|+++..+.....+.+|+..|.++....+|.+|+|||.|+++++|-++.+ .+......|...+..+... ..
T Consensus 345 s~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~a 424 (775)
T KOG0319|consen 345 SPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGA 424 (775)
T ss_pred CCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCc
Confidence 99999999887777789999999999996667789999999999999977433 2344566777777776653 34
Q ss_pred ceEEEEeCCCeEEEEEcCCCce-----ee----EecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc
Q 008467 370 VSFATSSTDNMIYVCKIGENRP-----IK----TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 440 (564)
Q Consensus 370 ~~~~~~~~d~~i~~~~~~~~~~-----~~----~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~ 440 (564)
..|+++|.|.++.+|++...++ +. +...|...|+|++++|+.+++||||.|.+.+||++........+.+|
T Consensus 425 sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH 504 (775)
T KOG0319|consen 425 SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGH 504 (775)
T ss_pred cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCC
Confidence 5789999999999999976321 11 23579999999999999999999999999999999999999999999
Q ss_pred cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467 441 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 520 (564)
Q Consensus 441 ~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~ 520 (564)
...+.++.|+|... +++|+|.|++|+||.+.+..|+.++.||+..|..+.|-.+|+.|++|+.||.|++|+
T Consensus 505 ~RGvw~V~Fs~~dq---------~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 505 TRGVWCVSFSKNDQ---------LLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred ccceEEEEeccccc---------eeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 99999999999754 799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467 521 LKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVL 560 (564)
Q Consensus 521 ~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~ 560 (564)
++++.++++++.+ ..|++++-++.+.++++|++||.+.+|
T Consensus 576 ikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 576 IKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred ccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEe
Confidence 9999999999875 469999999999999999999999998
No 25
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.6e-36 Score=265.25 Aligned_cols=278 Identities=24% Similarity=0.438 Sum_probs=245.9
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCcee--EeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc
Q 008467 272 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK--CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE 349 (564)
Q Consensus 272 ~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~ 349 (564)
..+.+.|..+.|+|+|.+||||+.|..|.+|++.+... ..+.+|.++|..+.|.++++.+++++.|++++.||+++|+
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~ 123 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK 123 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccce
Confidence 45678899999999999999999999999999877544 4678999999999999999999999999999999999999
Q ss_pred eeEEEeecccCeEEEEcC--CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEe
Q 008467 350 WKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 427 (564)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd 427 (564)
....+..|..-+..++.. +...+.+++.|+++++||++...+++++. ..-.++++.|..++..+.+|+-|+.|++||
T Consensus 124 ~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd 202 (338)
T KOG0265|consen 124 RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWD 202 (338)
T ss_pred eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeec
Confidence 999999998887777653 33456788899999999999888887764 345789999999999999999999999999
Q ss_pred CCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC----CeEEEEEeCCCC----CEEEEE
Q 008467 428 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----GKLLYSLNGHRE----PVYSLA 499 (564)
Q Consensus 428 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----~~~~~~~~~h~~----~i~~~~ 499 (564)
++.....+.+++|..+|+.+..+|.|. ++.+-++|.++++||++- .+++..+.+|.. .....+
T Consensus 203 ~r~~d~~~~lsGh~DtIt~lsls~~gs---------~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs 273 (338)
T KOG0265|consen 203 LRKNDGLYTLSGHADTITGLSLSRYGS---------FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS 273 (338)
T ss_pred cccCcceEEeecccCceeeEEeccCCC---------ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence 999999999999999999999999986 688999999999999873 455777766542 346679
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEE
Q 008467 500 FSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCV 559 (564)
Q Consensus 500 ~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v 559 (564)
|||+++++.+|+.|+.+++||.....++-.++++ +.|..+.|+|.-..|..|+.|+++.+
T Consensus 274 wsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 274 WSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 9999999999999999999999988888888876 45899999999999999999999875
No 26
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.3e-37 Score=309.19 Aligned_cols=270 Identities=28% Similarity=0.483 Sum_probs=240.3
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467 275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 354 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 354 (564)
...|+|..|++|+.+||.|-.|..|++|.........++.- .+ -..+=+.+.|-.+.+-|.........+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~-------~~---l~~~d~~sad~~~~~~D~~~~~~~~~L 447 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDA-------SD---LSNIDTESADVDVDMLDDDSSGTSRTL 447 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccch-------hh---hccccccccchhhhhccccCCceeEEe
Confidence 46799999999999999999999999999765432222211 11 112334566666888888888888889
Q ss_pred eecccCeEEEEcCCCceE-EEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 008467 355 EFHSGPTLDVDWRNNVSF-ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 433 (564)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~-~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~ 433 (564)
..|.+||+...+.++..| ++|+.|.++++|.+.+...+..++||..+|..+.|+|.|-++||||.|++.++|......+
T Consensus 448 ~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~P 527 (707)
T KOG0263|consen 448 YGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKP 527 (707)
T ss_pred ecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCc
Confidence 999999999999877655 7888999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC
Q 008467 434 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 513 (564)
Q Consensus 434 ~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d 513 (564)
.+.+.+|...+.|+.|+|+.. ++++||.|.+||+||+.+|..+..+.||.++|.+++|||+|++||+|+.|
T Consensus 528 lRifaghlsDV~cv~FHPNs~---------Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed 598 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPNSN---------YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED 598 (707)
T ss_pred hhhhcccccccceEEECCccc---------ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC
Confidence 999999999999999999875 89999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCeEEEEEecCC-CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 514 KSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 514 g~i~iw~~~~~~~~~~~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
|.|+|||+.+|+++..+.++. .|++++|+.||+.||+|+.|.+|.+||+.
T Consensus 599 ~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 599 GLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred CcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 999999999999998887654 58999999999999999999999999986
No 27
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.1e-35 Score=321.27 Aligned_cols=288 Identities=21% Similarity=0.416 Sum_probs=232.5
Q ss_pred cCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-CCCEEE
Q 008467 213 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLA 291 (564)
Q Consensus 213 ~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~l~ 291 (564)
.+|...|++++|+|+|++||||+.|+.|+||++............+ .. .. .....|.+++|++ ++.+|+
T Consensus 480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~----~~-~~-----~~~~~v~~l~~~~~~~~~la 549 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYP----VV-EL-----ASRSKLSGICWNSYIKSQVA 549 (793)
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccc----eE-Ee-----cccCceeeEEeccCCCCEEE
Confidence 4589999999999999999999999999999975421110000000 00 01 1235689999987 578999
Q ss_pred EEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCC
Q 008467 292 TGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN 369 (564)
Q Consensus 292 sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (564)
+++.||.|++||.. +.....+.+|.++|++++|+| ++.+|++|+.|++|++||++++.....
T Consensus 550 s~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~---------------- 613 (793)
T PLN00181 550 SSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT---------------- 613 (793)
T ss_pred EEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE----------------
Confidence 99999999999976 556677889999999999997 788999999999999999987643322
Q ss_pred ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCe-eeeecccccccEEEE
Q 008467 370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD-PTGSLLASCSDDVTAKIWNMKQDK-YVHDLREHSKEIYTI 447 (564)
Q Consensus 370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~~~las~s~dg~i~iwd~~~~~-~~~~~~~~~~~i~~i 447 (564)
+..+ ..|.++.|+ +++.+|++|+.||.|++||+++.+ .+..+.+|...|.++
T Consensus 614 -------------------------~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v 667 (793)
T PLN00181 614 -------------------------IKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYV 667 (793)
T ss_pred -------------------------EecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEE
Confidence 2222 357788884 579999999999999999998765 466778999999999
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC------CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467 448 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 521 (564)
Q Consensus 448 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~------~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~ 521 (564)
.|.+ +. +|++++.|++|+|||+.. ..++..+.+|...+.+++|+|++.+||+|+.|+.|++|+.
T Consensus 668 ~f~~-~~---------~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 668 RFVD-SS---------TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHK 737 (793)
T ss_pred EEeC-CC---------EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence 9963 22 689999999999999974 3567889999999999999999999999999999999998
Q ss_pred CCCeEEEEEe--------------cCCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 522 KEGKIVKTYT--------------GNGGIFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 522 ~~~~~~~~~~--------------~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
.....+..+. ....|.+++|+++|+.|++|+.+|.|.||++
T Consensus 738 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 738 AFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 7665443332 1234889999999999999999999999985
No 28
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.5e-35 Score=277.22 Aligned_cols=277 Identities=29% Similarity=0.591 Sum_probs=249.2
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467 217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 296 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 296 (564)
..|++++||.+|..||+|+.||.+|||+...... .....|.++|.++.|+..|++|++++.|
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~------------------~tl~~HkgPI~slKWnk~G~yilS~~vD 297 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI------------------STLGQHKGPIFSLKWNKKGTYILSGGVD 297 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhh------------------hhhhccCCceEEEEEcCCCCEEEeccCC
Confidence 5799999999999999999999999999754321 1123467899999999999999999999
Q ss_pred CeEEEEEC-CCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCC-ceEEE
Q 008467 297 GQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFAT 374 (564)
Q Consensus 297 g~i~vw~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 374 (564)
|++.+||. .|.....+.-|..+-..+.|-.+ .-|++++.|+.|+++-+.....+.++..|.+++..+.|.+. ..+++
T Consensus 298 ~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS 376 (524)
T KOG0273|consen 298 GTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLAS 376 (524)
T ss_pred ccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEE
Confidence 99999996 46677788889998788899754 56899999999999999888889999999999999999754 56789
Q ss_pred EeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCC---------CEEEEEeCCCcEEEEeCCCCeeeeecccccccEE
Q 008467 375 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG---------SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 445 (564)
Q Consensus 375 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~---------~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~ 445 (564)
|+.|+++++|..+....+..|.+|..+|..+.|+|+| ..+++++.|++|++||...+.+++.|..|+.+|+
T Consensus 377 ~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVy 456 (524)
T KOG0273|consen 377 CSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVY 456 (524)
T ss_pred ecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceE
Confidence 9999999999999999999999999999999999975 4689999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 008467 446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 522 (564)
Q Consensus 446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~ 522 (564)
+++|+|+|. ++|+|+.||.|.||++++++.+++..+. ..|..++|+.+|.+|..+-.|+.+++-|++
T Consensus 457 svafS~~g~---------ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 457 SVAFSPNGR---------YLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEecCCCc---------EEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999986 8999999999999999999999888754 569999999999999999999999998875
No 29
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.7e-35 Score=282.08 Aligned_cols=285 Identities=36% Similarity=0.621 Sum_probs=250.6
Q ss_pred eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467 210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 289 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 289 (564)
..+.+|..+|.+++|+|++++|++|+.||.+++|++.++.. .... ..+...+..+.|++++++
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~-------------~~~~----~~~~~~i~~~~~~~~~~~ 65 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-------------LRTL----KGHTGPVRDVAASADGTY 65 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc-------------EEEE----ecCCcceeEEEECCCCCE
Confidence 35678999999999999999999999999999999875431 0111 123456889999999999
Q ss_pred EEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC
Q 008467 290 LATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 368 (564)
Q Consensus 290 l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 368 (564)
+++++.+|.+++|+... .....+..|...|.++.|++++.++++++.|+.+.+||+.+++....+..+...+..+.|.+
T Consensus 66 l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 145 (289)
T cd00200 66 LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP 145 (289)
T ss_pred EEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC
Confidence 99999999999999875 56667788999999999999988888888899999999998888888887888899999987
Q ss_pred CceEEEE-eCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEE
Q 008467 369 NVSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 447 (564)
Q Consensus 369 ~~~~~~~-~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i 447 (564)
+..++.+ +.++.+++|++...+++..+..|...+.+++|+|+++.+++++.|+.+++||++.++.+..+..|...+.++
T Consensus 146 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~ 225 (289)
T cd00200 146 DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV 225 (289)
T ss_pred cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEE
Confidence 5555544 459999999999888888999999999999999999999999999999999999988888888899999999
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467 448 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 520 (564)
Q Consensus 448 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~ 520 (564)
.|+|++. ++++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++|+
T Consensus 226 ~~~~~~~---------~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 226 AFSPDGY---------LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEcCCCc---------EEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999743 677787899999999999999988989999999999999999999999999999996
No 30
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.2e-35 Score=301.64 Aligned_cols=289 Identities=28% Similarity=0.523 Sum_probs=248.6
Q ss_pred eeEccC-CccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467 209 VTILEG-HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 287 (564)
Q Consensus 209 ~~~l~~-h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 287 (564)
...+.+ |...|.++.|+|+|++|++++.|+.+++|+..+... ........|...|..++|+|+|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------~~~~~l~~h~~~v~~~~fs~d~ 215 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------NLLRELSGHTRGVSDVAFSPDG 215 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------hhhccccccccceeeeEECCCC
Confidence 344444 478999999999999999999999999999854331 0001113456789999999999
Q ss_pred CEEEEEeCCCeEEEEEC-CC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEE
Q 008467 288 TLLATGSYDGQARIWST-NG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 365 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~-~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (564)
.++++|+.|++++||+. .. ....++.+|...|++++|+|+|+.+++|+.|++|+|||+++++
T Consensus 216 ~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~---------------- 279 (456)
T KOG0266|consen 216 SYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE---------------- 279 (456)
T ss_pred cEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe----------------
Confidence 99999999999999998 33 5778899999999999999999999999999999999998754
Q ss_pred cCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe--eeeeccccccc
Q 008467 366 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK--YVHDLREHSKE 443 (564)
Q Consensus 366 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~ 443 (564)
++..+.+|.+.|++++|++++++|++++.|+.|+|||+.++. ++..+..+...
T Consensus 280 -------------------------~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~ 334 (456)
T KOG0266|consen 280 -------------------------CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS 334 (456)
T ss_pred -------------------------EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC
Confidence 345677899999999999999999999999999999999998 56777766555
Q ss_pred --EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCC---EEEEEEcCCCCEEEEEeCCCcEEE
Q 008467 444 --IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP---VYSLAFSPTGEYLASGSLDKSMHI 518 (564)
Q Consensus 444 --i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~---i~~~~~spdg~~lasgs~dg~i~i 518 (564)
+++++|+|++. ++++++.|+.+++||+..+.++..+.+|... +.+..+++.|.++++|+.|+.|++
T Consensus 335 ~~~~~~~fsp~~~---------~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~ 405 (456)
T KOG0266|consen 335 APVTSVQFSPNGK---------YLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYV 405 (456)
T ss_pred CceeEEEECCCCc---------EEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEE
Confidence 99999999886 7899999999999999999999999988764 455567889999999999999999
Q ss_pred EeCCCCeEEEEEecC--CCEEEEEEccCCCEEEEEE--cCCcEEEEEe
Q 008467 519 WSLKEGKIVKTYTGN--GGIFEVCWNKEGDKIAACF--ANHTVCVLDF 562 (564)
Q Consensus 519 w~~~~~~~~~~~~~~--~~i~~~~w~~~g~~la~~~--~~~~v~v~~~ 562 (564)
|+..++..+..+.++ ..+..++|++..+.++++. .|+.+.+|.-
T Consensus 406 ~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 406 WDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred EeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 999998888888777 5688999999999999987 6778888853
No 31
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.5e-36 Score=285.12 Aligned_cols=296 Identities=25% Similarity=0.444 Sum_probs=252.0
Q ss_pred ccceeecCCceeEccCCccceEEEEECC-CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCC
Q 008467 199 SESFEIPNSDVTILEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKD 277 (564)
Q Consensus 199 ~~~~~~~~~~~~~l~~h~~~V~~~~~sp-~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (564)
+....+|...+.++.||+..|+++.|.| .+.+|++||.|+.|+||++.+.. .+.....+|..+
T Consensus 197 ~~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~----------------~~lrtf~gH~k~ 260 (503)
T KOG0282|consen 197 EERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR----------------RCLRTFKGHRKP 260 (503)
T ss_pred cceeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc----------------ceehhhhcchhh
Confidence 4567789999999999999999999999 79999999999999999987521 112233456889
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCcceeEEEe
Q 008467 278 VTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFE 355 (564)
Q Consensus 278 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~ 355 (564)
|..++|+.+|..|+|+++|+.+++||++. .....+. ....+++++|+|++ +.|++|+.|+.|+.||++++++++.+.
T Consensus 261 Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd 339 (503)
T KOG0282|consen 261 VRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD 339 (503)
T ss_pred hhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH
Confidence 99999999999999999999999999874 4444442 34567999999999 789999999999999999999999999
Q ss_pred ecccCeEEEEcC-CCceEEEEeCCCeEEEEEcCCCceeeEecC-CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 008467 356 FHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 433 (564)
Q Consensus 356 ~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~ 433 (564)
.|.+++.++.|. .+..|++++.|+.+++|+.+.+.+++.... +.....|+..+|++++++.-+.|+.|-|+.+...-.
T Consensus 340 ~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r 419 (503)
T KOG0282|consen 340 RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR 419 (503)
T ss_pred hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence 999999999986 457899999999999999998887765432 344677899999999999999999999998653221
Q ss_pred ---eeeccccccc--EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCC-CEE
Q 008467 434 ---VHDLREHSKE--IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYL 507 (564)
Q Consensus 434 ---~~~~~~~~~~--i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg-~~l 507 (564)
-..|.+|... -..+.|||+|. +|++|+.||.+.+||.++.+.+..+.+|..++..+.|+|.. ..+
T Consensus 420 ~nkkK~feGh~vaGys~~v~fSpDG~---------~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skv 490 (503)
T KOG0282|consen 420 LNKKKRFEGHSVAGYSCQVDFSPDGR---------TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKV 490 (503)
T ss_pred cCHhhhhcceeccCceeeEEEcCCCC---------eEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCccee
Confidence 2345666533 45678999987 89999999999999999999999999999999999999975 689
Q ss_pred EEEeCCCcEEEEe
Q 008467 508 ASGSLDKSMHIWS 520 (564)
Q Consensus 508 asgs~dg~i~iw~ 520 (564)
||||.||.|++|+
T Consensus 491 at~~w~G~Ikiwd 503 (503)
T KOG0282|consen 491 ATCGWDGLIKIWD 503 (503)
T ss_pred EecccCceeEecC
Confidence 9999999999996
No 32
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2e-35 Score=261.78 Aligned_cols=286 Identities=27% Similarity=0.455 Sum_probs=242.1
Q ss_pred ceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467 208 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 287 (564)
Q Consensus 208 ~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 287 (564)
.+..+.||.+.|+++.|+|+|..|||||.|..|.+|++..... +...+ ..|+..|..+.|.+|+
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce---------N~~~l-------kgHsgAVM~l~~~~d~ 102 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE---------NFWVL-------KGHSGAVMELHGMRDG 102 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc---------ceeee-------ccccceeEeeeeccCC
Confidence 3457889999999999999999999999999999999764322 11222 2567899999999999
Q ss_pred CEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCE-EEEeeCCCcEEEEECCCcceeEEEeecccCeEEEE
Q 008467 288 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 365 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (564)
+.+++++.|.+++.||.. |+....++.|.+-|.++.-+.-|.. +.|++.|+++++||+++...++.++. ...+.++.
T Consensus 103 s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~ 181 (338)
T KOG0265|consen 103 SHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVG 181 (338)
T ss_pred CEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEE
Confidence 999999999999999975 6777788999999999885555554 56899999999999998887776532 23466788
Q ss_pred cCCC-ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC----Ceeeeecccc
Q 008467 366 WRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ----DKYVHDLREH 440 (564)
Q Consensus 366 ~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~----~~~~~~~~~~ 440 (564)
|.+. ....+++-|+.|.+|++..+....++.||...|+.+..+|+|.++.+-+.|.++++||++. .+++..+.+|
T Consensus 182 f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~ 261 (338)
T KOG0265|consen 182 FKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH 261 (338)
T ss_pred ecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecc
Confidence 8654 5678889999999999999999999999999999999999999999999999999999874 3446666554
Q ss_pred cc----cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008467 441 SK----EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM 516 (564)
Q Consensus 441 ~~----~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i 516 (564)
.. ......|+|++. .+..|+.|..+.+||......++.+.||.+.|+++.|+|...+|.+++.|++|
T Consensus 262 ~hnfeknlL~cswsp~~~---------~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 262 IHNFEKNLLKCSWSPNGT---------KITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred hhhhhhhcceeeccCCCC---------ccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCcee
Confidence 32 345678999876 57789999999999999889999999999999999999999999999999999
Q ss_pred EEE
Q 008467 517 HIW 519 (564)
Q Consensus 517 ~iw 519 (564)
++=
T Consensus 333 ~lg 335 (338)
T KOG0265|consen 333 YLG 335 (338)
T ss_pred Eee
Confidence 863
No 33
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=8.2e-34 Score=274.44 Aligned_cols=280 Identities=36% Similarity=0.627 Sum_probs=251.0
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCccee
Q 008467 273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 351 (564)
Q Consensus 273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 351 (564)
.|...|++++|+|++++|++++.||.+++|+... .....+..|..++..+.|+|++++|++++.|+.+++||+.+++..
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~ 86 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV 86 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccce
Confidence 3567899999999999999999999999999764 455677889999999999999999999999999999999988888
Q ss_pred EEEeecccCeEEEEcCCCceE-EEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008467 352 QQFEFHSGPTLDVDWRNNVSF-ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 430 (564)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~ 430 (564)
..+..+...+..+.|.++..+ ++++.++.+++|++...+++..+..|...+.+++|+|++.++++++.|+.|++||+++
T Consensus 87 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 166 (289)
T cd00200 87 RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT 166 (289)
T ss_pred EEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc
Confidence 888888888999999876544 4555599999999998888888999999999999999999999998899999999998
Q ss_pred CeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 008467 431 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG 510 (564)
Q Consensus 431 ~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasg 510 (564)
++.+..+..|...+.++.|+|++. .+++++.|+.|++||++.++.+..+..|..+|.+++|+|++.+++++
T Consensus 167 ~~~~~~~~~~~~~i~~~~~~~~~~---------~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 167 GKCVATLTGHTGEVNSVAFSPDGE---------KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred cccceeEecCccccceEEECCCcC---------EEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 888888888988999999999874 57778889999999999999888888898899999999999999999
Q ss_pred eCCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 511 SLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 511 s~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
+.||.|++|++.+++.+..+..+ ..+..++|+++++.|++++.|+.+.||+
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999999999998888877654 4699999999999999999999999986
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=8e-37 Score=275.08 Aligned_cols=268 Identities=28% Similarity=0.520 Sum_probs=233.9
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeE
Q 008467 274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 352 (564)
Q Consensus 274 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~ 352 (564)
.++.|.|+.+ |...+++|..|++|+|||.+. .....+.+|+++|.|+.|.. ..+++||+|.+|++||+++++.+.
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhh
Confidence 4578999987 456899999999999999875 45667899999999998864 589999999999999999999999
Q ss_pred EEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCc---eeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008467 353 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR---PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 429 (564)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~---~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~ 429 (564)
++..|...++.+.+.++ ..++|+.|.++.+|++.... ..+.+.||...|+.+.|+ .++++|+|.|.+|++|++.
T Consensus 272 tlihHceaVLhlrf~ng-~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~s 348 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSNG-YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTS 348 (499)
T ss_pred HHhhhcceeEEEEEeCC-EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEecc
Confidence 99999999999988655 57899999999999998764 345678999999999996 5799999999999999999
Q ss_pred CCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 008467 430 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 509 (564)
Q Consensus 430 ~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~las 509 (564)
+..+++++.+|...|.|+.+.- .++++||.|.+|++||+..|.++..+.||..-|.++.| |.+.|++
T Consensus 349 t~efvRtl~gHkRGIAClQYr~-----------rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVS 415 (499)
T KOG0281|consen 349 TCEFVRTLNGHKRGIACLQYRD-----------RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS 415 (499)
T ss_pred ceeeehhhhcccccceehhccC-----------eEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeee
Confidence 9999999999999999988743 37899999999999999999999999999999999999 5679999
Q ss_pred EeCCCcEEEEeCCCCeEE---------EEE-ecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 510 GSLDKSMHIWSLKEGKIV---------KTY-TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 510 gs~dg~i~iw~~~~~~~~---------~~~-~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
|+.||+|+|||+..+.-. .+. ...+.|+.+.|+ .-.+++++.|.+|-||||-
T Consensus 416 GaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 416 GAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFL 477 (499)
T ss_pred ccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcC
Confidence 999999999999876422 111 234679999985 5688899999999999984
No 35
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1e-34 Score=263.64 Aligned_cols=286 Identities=22% Similarity=0.384 Sum_probs=233.4
Q ss_pred eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
...+.+|+..|+++.||-+|.+||||..+|.++||+..++... ..+. ..-..+.-+.|+|.+.
T Consensus 99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~----------~~~~-------~e~~dieWl~WHp~a~ 161 (399)
T KOG0296|consen 99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQ----------WKLD-------QEVEDIEWLKWHPRAH 161 (399)
T ss_pred eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceE----------EEee-------cccCceEEEEeccccc
Confidence 3567899999999999999999999999999999998876421 1111 1235688899999999
Q ss_pred EEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecc-cCeEEEEc
Q 008467 289 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-GPTLDVDW 366 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~ 366 (564)
.|+.|+.||.+.+|.... ...+.+.+|+.++++-.|.|+|++++++..||+|++||+.++.....+.... .....+..
T Consensus 162 illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~ 241 (399)
T KOG0296|consen 162 ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISL 241 (399)
T ss_pred EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccc
Confidence 999999999999999876 6777899999999999999999999999999999999999997666554211 11122222
Q ss_pred C-CCceEEEEeCCCeEEEEEcCCCceeeEec--------CCCcceEEEE---ECCCCCEEEEEeCCCcEEEEeCCCCeee
Q 008467 367 R-NNVSFATSSTDNMIYVCKIGENRPIKTFA--------GHQGEVNCVK---WDPTGSLLASCSDDVTAKIWNMKQDKYV 434 (564)
Q Consensus 367 ~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~--------~h~~~i~~v~---~~~~~~~las~s~dg~i~iwd~~~~~~~ 434 (564)
. ....++.|+.++.+++.....++.+..+. ++...+.|+. |+..-++.|+|+-||+|.|||+...+..
T Consensus 242 ~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R 321 (399)
T KOG0296|consen 242 NLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR 321 (399)
T ss_pred ccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh
Confidence 2 22345667778888888777777666655 3455555554 4555678899999999999999887665
Q ss_pred eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCC
Q 008467 435 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK 514 (564)
Q Consensus 435 ~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg 514 (564)
+. -.|...|+.+.|-++. +|++++.||.|+.||.++|++++++.||..+|.+++++|++++++|+|.|+
T Consensus 322 ~~-c~he~~V~~l~w~~t~----------~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~ 390 (399)
T KOG0296|consen 322 HI-CEHEDGVTKLKWLNTD----------YLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN 390 (399)
T ss_pred ee-ccCCCceEEEEEcCcc----------hheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence 44 4688889999998832 688999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCC
Q 008467 515 SMHIWSLK 522 (564)
Q Consensus 515 ~i~iw~~~ 522 (564)
+.+||++.
T Consensus 391 ~a~VF~v~ 398 (399)
T KOG0296|consen 391 TALVFEVP 398 (399)
T ss_pred eEEEEecC
Confidence 99999875
No 36
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-35 Score=270.28 Aligned_cols=302 Identities=26% Similarity=0.385 Sum_probs=239.6
Q ss_pred cceeecCCceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeE
Q 008467 200 ESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT 279 (564)
Q Consensus 200 ~~~~~~~~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 279 (564)
...++|.....++..|+++|.-+.||++|++|||++.|.++.||++..... ..++ ....+|..+|.
T Consensus 208 ~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-----------~kl~---~tlvgh~~~V~ 273 (519)
T KOG0293|consen 208 GRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-----------FKLK---KTLVGHSQPVS 273 (519)
T ss_pred CcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-----------eeee---eeeecccCceE
Confidence 344678888889999999999999999999999999999999999754221 1111 12235678999
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCc-eeEee-cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeec
Q 008467 280 TLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 357 (564)
Q Consensus 280 ~l~~s~~g~~l~sg~~dg~i~vw~~~~~-~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 357 (564)
.+.||||.++|++++.+..+++||+... ....+ .+|...+.+++|.|||..+++|+.|+++..||+.... ...++..
T Consensus 274 yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gv 352 (519)
T KOG0293|consen 274 YIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGV 352 (519)
T ss_pred EEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhccccc
Confidence 9999999999999999999999998643 33322 3456899999999999999999999999999986543 2333322
Q ss_pred c-cCeEEEEcCC-CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeee
Q 008467 358 S-GPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 435 (564)
Q Consensus 358 ~-~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~ 435 (564)
. ..+.++.... +..+++...|..|++++......+.. ..-..+|++++.|.+++++.+.-.+..+++||+...+.+.
T Consensus 353 r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~l-ise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~ 431 (519)
T KOG0293|consen 353 RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGL-ISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVR 431 (519)
T ss_pred ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcc-ccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHH
Confidence 2 3466666544 34555667888888888765433322 2335689999999999999999999999999999888888
Q ss_pred ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCC-CEEEEEeCCC
Q 008467 436 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLASGSLDK 514 (564)
Q Consensus 436 ~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg-~~lasgs~dg 514 (564)
.+.+|...-+-|.-.-.|. +..+++|||.|+.|+||+..+|+++.++.||...|++++|+|.. .++|+||+||
T Consensus 432 kY~Ghkq~~fiIrSCFgg~------~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDg 505 (519)
T KOG0293|consen 432 KYFGHKQGHFIIRSCFGGG------NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDG 505 (519)
T ss_pred HhhcccccceEEEeccCCC------CcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCC
Confidence 8999987766665333332 23489999999999999999999999999999999999999965 6789999999
Q ss_pred cEEEEeCCC
Q 008467 515 SMHIWSLKE 523 (564)
Q Consensus 515 ~i~iw~~~~ 523 (564)
+|+||....
T Consensus 506 tIRIWg~~~ 514 (519)
T KOG0293|consen 506 TIRIWGPSD 514 (519)
T ss_pred eEEEecCCc
Confidence 999998753
No 37
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.2e-35 Score=280.29 Aligned_cols=285 Identities=27% Similarity=0.376 Sum_probs=250.6
Q ss_pred EccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEE
Q 008467 211 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 290 (564)
Q Consensus 211 ~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 290 (564)
.+..|+..|-++.|||...+++++=..|.+.||+.++...... + ....-+|.+..|-+.-+++
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVks-------------f----eV~~~PvRa~kfiaRknWi 70 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKS-------------F----EVSEVPVRAAKFIARKNWI 70 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeee-------------e----eecccchhhheeeeccceE
Confidence 3455889999999999999999999999999999887543211 1 1123567888888888999
Q ss_pred EEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCC
Q 008467 291 ATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN 369 (564)
Q Consensus 291 ~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (564)
++|+.|..||||+.+ +..+..|..|..-|.+++.+|.-.+++|+|.|.+|++||...+
T Consensus 71 v~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~--------------------- 129 (794)
T KOG0276|consen 71 VTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE--------------------- 129 (794)
T ss_pred EEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc---------------------
Confidence 999999999999976 4667889999999999999999999999999999999997542
Q ss_pred ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEE
Q 008467 370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 448 (564)
Q Consensus 370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~ 448 (564)
-...++|.||+..|.+++|+| |.+.+||||-|++|++|.+.+..+..++.+|...|.++.
T Consensus 130 -------------------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vd 190 (794)
T KOG0276|consen 130 -------------------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVD 190 (794)
T ss_pred -------------------eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEE
Confidence 123468999999999999999 567899999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 008467 449 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 528 (564)
Q Consensus 449 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~ 528 (564)
|-+.|. +.+|+||+.|.+|+|||.++..|+.++.||...|..+.|+|.=..+++||.||+|+||+..+.++.+
T Consensus 191 yy~~gd-------kpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~ 263 (794)
T KOG0276|consen 191 YYTGGD-------KPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEK 263 (794)
T ss_pred eccCCC-------cceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhh
Confidence 998764 3489999999999999999999999999999999999999999999999999999999999988887
Q ss_pred EEe-cCCCEEEEEEccCCCEEEEEEcCCcEEE
Q 008467 529 TYT-GNGGIFEVCWNKEGDKIAACFANHTVCV 559 (564)
Q Consensus 529 ~~~-~~~~i~~~~w~~~g~~la~~~~~~~v~v 559 (564)
++. +-+.+++++-.+.+.++|+|+.+|.+.|
T Consensus 264 tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 264 TLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred hhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 765 3467999999999999999999987754
No 38
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-34 Score=246.47 Aligned_cols=241 Identities=24% Similarity=0.464 Sum_probs=219.6
Q ss_pred eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC-CCceEEEEeCCCeEEEEEcC
Q 008467 309 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIG 387 (564)
Q Consensus 309 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~ 387 (564)
...+.+|.++|..++|+-+|+|.++++.|++|++|++..+.+++++..|...++++... ++..|++|+.|..+.+||+.
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 45678999999999999999999999999999999999999999999999999998864 66789999999999999999
Q ss_pred CCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC--eeeeecccccccEEEEEEccCCCCCCCCCCcEEE
Q 008467 388 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD--KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 465 (564)
Q Consensus 388 ~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~--~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l 465 (564)
+++.++.|+||.+.|+.++|+.+...+++||.|.++++||.++. ++++.+......|.+|..... .+
T Consensus 90 TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h-----------eI 158 (307)
T KOG0316|consen 90 TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH-----------EI 158 (307)
T ss_pred cCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc-----------EE
Confidence 99999999999999999999999999999999999999998754 567777777788888877542 58
Q ss_pred EEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCE---EEEEEc
Q 008467 466 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI---FEVCWN 542 (564)
Q Consensus 466 ~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i---~~~~w~ 542 (564)
++||.||++|.||++.|+......+| ||++++||+||+...+++.|++|++.|-.+|++++.|.++... .+.+++
T Consensus 159 vaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~ 236 (307)
T KOG0316|consen 159 VAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLN 236 (307)
T ss_pred EeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeec
Confidence 89999999999999999987666554 8999999999999999999999999999999999999887543 478899
Q ss_pred cCCCEEEEEEcCCcEEEEEe
Q 008467 543 KEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 543 ~~g~~la~~~~~~~v~v~~~ 562 (564)
....+++.|+.||.|.+||+
T Consensus 237 qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 237 QSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred ccceeEEeccCCceEEEEEe
Confidence 99999999999999999997
No 39
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3.7e-33 Score=242.62 Aligned_cols=274 Identities=24% Similarity=0.368 Sum_probs=244.5
Q ss_pred cccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCce---eEeecCCCCCEEEEEeCCC-CCEEEEeeCCCcEEEEECC
Q 008467 271 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL---KCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVK 346 (564)
Q Consensus 271 ~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~---~~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~ 346 (564)
..++...|.+++|+.+|..|++|+.|+++++|+..+.. .....+|.+.|-.++|+|. ...|++++.|++|++||++
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR 95 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence 34556789999999999999999999999999987542 1245789999999999885 4689999999999999999
Q ss_pred CcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEE
Q 008467 347 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 426 (564)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iw 426 (564)
.+++........+.+...-+.++..++.++.|..|...+.++.+++..+. ..-.++-++|+.++.+++.....|+|.|-
T Consensus 96 ~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~IL 174 (313)
T KOG1407|consen 96 SGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEIL 174 (313)
T ss_pred cCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEE
Confidence 99999988888777777777788899999999999999998877665443 34467789999888888888788999999
Q ss_pred eCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCE
Q 008467 427 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 506 (564)
Q Consensus 427 d~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~ 506 (564)
....-+++.++++|...+.+|.|+|+|. ++|+|+.|..+.+||+..--|+..+..+.-||..|+||.||++
T Consensus 175 sypsLkpv~si~AH~snCicI~f~p~Gr---------yfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~ 245 (313)
T KOG1407|consen 175 SYPSLKPVQSIKAHPSNCICIEFDPDGR---------YFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRM 245 (313)
T ss_pred eccccccccccccCCcceEEEEECCCCc---------eEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcce
Confidence 9999999999999999999999999997 8999999999999999988888899989999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcC
Q 008467 507 LASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN 554 (564)
Q Consensus 507 lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~ 554 (564)
||+||.|..|-|=++++|..+...+..++.+.++|+|....||.+..|
T Consensus 246 lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 246 LASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecC
Confidence 999999999999999999999999999999999999999999988765
No 40
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-33 Score=239.62 Aligned_cols=285 Identities=20% Similarity=0.380 Sum_probs=240.9
Q ss_pred eecCCceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEE
Q 008467 203 EIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD 282 (564)
Q Consensus 203 ~~~~~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 282 (564)
+.|.....+|..|+++|.++.|+-+|++.+|++.|.++|+|+...+.. ++.. ..|...|..++
T Consensus 4 e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~l-------------iktY----sghG~EVlD~~ 66 (307)
T KOG0316|consen 4 ELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGAL-------------IKTY----SGHGHEVLDAA 66 (307)
T ss_pred cCcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccce-------------eeee----cCCCceeeecc
Confidence 356667788999999999999999999999999999999999765532 2332 34567799999
Q ss_pred ECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCe
Q 008467 283 WNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 361 (564)
Q Consensus 283 ~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 361 (564)
-+.|...|++|+.|..+.+||++ |+....+.+|.+.|..++|+.+...+++||.|.++++||.++..
T Consensus 67 ~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s------------ 134 (307)
T KOG0316|consen 67 LSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS------------ 134 (307)
T ss_pred ccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCC------------
Confidence 99999999999999999999986 67788999999999999999999999999999999999987643
Q ss_pred EEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccccc
Q 008467 362 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS 441 (564)
Q Consensus 362 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~ 441 (564)
..|++.+......|.++... +..|++||.||++|.||++.+....... .
T Consensus 135 ---------------------------~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~--g 183 (307)
T KOG0316|consen 135 ---------------------------FEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF--G 183 (307)
T ss_pred ---------------------------CCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhc--C
Confidence 35667777777788888775 6789999999999999999998766554 4
Q ss_pred ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEE--EEEcCCCCEEEEEeCCCcEEEE
Q 008467 442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS--LAFSPTGEYLASGSLDKSMHIW 519 (564)
Q Consensus 442 ~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~--~~~spdg~~lasgs~dg~i~iw 519 (564)
.+|+++.|++++. .++.++.|+++++.|-.+|+.+...++|...=+. .+++.....+++||.||.|++|
T Consensus 184 ~pit~vs~s~d~n---------c~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~w 254 (307)
T KOG0316|consen 184 HPITSVSFSKDGN---------CSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFW 254 (307)
T ss_pred CcceeEEecCCCC---------EEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEE
Confidence 5799999999986 5667889999999999999999999999765444 4677778899999999999999
Q ss_pred eCCCCeEEEEEecCCC--EEEEEEccCCCEEEEEEcCCc
Q 008467 520 SLKEGKIVKTYTGNGG--IFEVCWNKEGDKIAACFANHT 556 (564)
Q Consensus 520 ~~~~~~~~~~~~~~~~--i~~~~w~~~g~~la~~~~~~~ 556 (564)
|+.+++++..+...+. +.+++++|.-..+.++...+.
T Consensus 255 dLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~ 293 (307)
T KOG0316|consen 255 DLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGD 293 (307)
T ss_pred EeccceeeeeeccCCceeEEeeecccCccceeEecCCce
Confidence 9999998888876554 579999998877776654443
No 41
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.9e-34 Score=257.70 Aligned_cols=241 Identities=28% Similarity=0.519 Sum_probs=220.5
Q ss_pred cccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc
Q 008467 271 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE 349 (564)
Q Consensus 271 ~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~ 349 (564)
...|.+.|.|+++.|-.++|++|+.|++++|||.. |.++.++.+|...|..+++++...|+++++.|+.|+.||+...+
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk 226 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK 226 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhh
Confidence 34677899999999999999999999999999975 77888999999999999999999999999999999999997654
Q ss_pred eeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008467 350 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 429 (564)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~ 429 (564)
.++.+-||-+.|.|++.+|.-..|+||+.|.++||||++
T Consensus 227 -----------------------------------------vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiR 265 (460)
T KOG0285|consen 227 -----------------------------------------VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIR 265 (460)
T ss_pred -----------------------------------------hHHHhccccceeEEEeccccceeEEecCCcceEEEeeec
Confidence 455677899999999999999999999999999999999
Q ss_pred CCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 008467 430 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 509 (564)
Q Consensus 430 ~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~las 509 (564)
+...++.+.+|..+|.++.+.|... .+++||+|++|++||++.|+...++..|...|.+++.+|....+|+
T Consensus 266 tr~~V~~l~GH~~~V~~V~~~~~dp---------qvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fAS 336 (460)
T KOG0285|consen 266 TRASVHVLSGHTNPVASVMCQPTDP---------QVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFAS 336 (460)
T ss_pred ccceEEEecCCCCcceeEEeecCCC---------ceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhc
Confidence 9999999999999999999988654 4889999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEeCCCCeEEEEEecCCC-EEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 510 GSLDKSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 510 gs~dg~i~iw~~~~~~~~~~~~~~~~-i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
+|.|. |+-|++..|..++.+.++.. |+.++-+.|| .+++|+.+|.+..||++
T Consensus 337 as~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 337 ASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWK 389 (460)
T ss_pred cCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecC
Confidence 99986 99999999999988877654 6789988887 66777799999999987
No 42
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.1e-34 Score=272.64 Aligned_cols=281 Identities=22% Similarity=0.421 Sum_probs=238.2
Q ss_pred cccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECC--CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 008467 271 TNEKSKDVTTLDWNG-EGTLLATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 347 (564)
Q Consensus 271 ~~~~~~~V~~l~~s~-~g~~l~sg~~dg~i~vw~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~ 347 (564)
..+|.+.|+++.|.| .+.+|++|+.|+.|+||++- +.++.++.+|..+|..++|+++|..|+|+|.|+.+++||+++
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET 289 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTET 289 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecccc
Confidence 356788999999999 89999999999999999963 678889999999999999999999999999999999999999
Q ss_pred cceeEEEeecccCeEEEEcC--CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEE
Q 008467 348 EEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 425 (564)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~i 425 (564)
|.+...|.... .+.++.+. +...|++++.|+.|..||++.++.++.+..|-+.|+.+.|-++|+.+++.++|++++|
T Consensus 290 G~~~~~f~~~~-~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~ri 368 (503)
T KOG0282|consen 290 GQVLSRFHLDK-VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRI 368 (503)
T ss_pred ceEEEEEecCC-CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEE
Confidence 99998876543 33455554 4468999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCeeeeecc-cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC---eEEEEEeCCCCC--EEEEE
Q 008467 426 WNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG---KLLYSLNGHREP--VYSLA 499 (564)
Q Consensus 426 wd~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~--i~~~~ 499 (564)
|+.+..-.+..+. .+...+.++..+|.+. +++.-+.|+.|.++.+... .....+.+|..+ -..+.
T Consensus 369 We~~~~v~ik~i~~~~~hsmP~~~~~P~~~---------~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 369 WENRIPVPIKNIADPEMHTMPCLTLHPNGK---------WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred EEcCCCccchhhcchhhccCcceecCCCCC---------eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence 9988765543322 1223345667778765 6888899999999986532 122356778644 45678
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccCC-CEEEEEEcCCcEEEEE
Q 008467 500 FSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEG-DKIAACFANHTVCVLD 561 (564)
Q Consensus 500 ~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g-~~la~~~~~~~v~v~~ 561 (564)
|||||.+|++|+.||.+.+||.++-+++..+..+ +.+..+.|+|.- +.+|+|+.+|.|.|||
T Consensus 440 fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999999999999988876 668899999965 6999999999999996
No 43
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=7.1e-33 Score=252.85 Aligned_cols=279 Identities=27% Similarity=0.475 Sum_probs=232.9
Q ss_pred CCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC---CEE
Q 008467 214 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG---TLL 290 (564)
Q Consensus 214 ~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g---~~l 290 (564)
.|.+.|.++.-. +++++||+.||++|||+..... .... .+|+.+|.+++|-... ..|
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~--------------~~~~----~Ght~~ik~v~~v~~n~~~~~f 162 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS--------------IKTI----VGHTGPIKSVAWVIKNSSSCLF 162 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCce--------------EEEE----ecCCcceeeeEEEecCCccceE
Confidence 488888888776 7899999999999999975321 1122 3456788888885433 359
Q ss_pred EEEeCCCeEEEEECCCc-----eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC------------------
Q 008467 291 ATGSYDGQARIWSTNGD-----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT------------------ 347 (564)
Q Consensus 291 ~sg~~dg~i~vw~~~~~-----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~------------------ 347 (564)
++++.|.++++|..+.. ....-.+|..+|-++...++|..+++||.|.+++||+..+
T Consensus 163 vsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~ 242 (423)
T KOG0313|consen 163 VSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQK 242 (423)
T ss_pred EEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhh
Confidence 99999999999976531 1223349999999999999999999999999999999321
Q ss_pred -------cceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCC
Q 008467 348 -------EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 420 (564)
Q Consensus 348 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~d 420 (564)
+..+-.+..|..++.++-|.+...+.+++.|.+|++||+..++.+..+.+ ...++|+.++|..++||+||.|
T Consensus 243 ~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssd 321 (423)
T KOG0313|consen 243 REKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSD 321 (423)
T ss_pred hhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCC
Confidence 11233567899999999999999999999999999999999887776654 4578999999999999999999
Q ss_pred CcEEEEeCCCCe---eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEEeCCCCCEE
Q 008467 421 VTAKIWNMKQDK---YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVY 496 (564)
Q Consensus 421 g~i~iwd~~~~~---~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~ 496 (564)
..||+||.+++. ..++|.+|...|.++.|+|... +.|++|+.|+++++||+++.+ .++.+.+|...|.
T Consensus 322 r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~--------~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl 393 (423)
T KOG0313|consen 322 RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNE--------FQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVL 393 (423)
T ss_pred CceeecCCCCCCCceeEEeeecchhhhhheecCCCCc--------eEEEEEecCCeEEEEEeccCCCcceeeccCCceEE
Confidence 999999998653 4578899999999999998753 589999999999999999887 8999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCC
Q 008467 497 SLAFSPTGEYLASGSLDKSMHIWSLK 522 (564)
Q Consensus 497 ~~~~spdg~~lasgs~dg~i~iw~~~ 522 (564)
++.|+ ++.+|++||.|++|+|+...
T Consensus 394 ~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 394 SVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEecc-CCceEEeccCcceEEEeccc
Confidence 99997 67899999999999998754
No 44
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3e-34 Score=258.50 Aligned_cols=273 Identities=24% Similarity=0.465 Sum_probs=231.7
Q ss_pred CccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 008467 215 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 294 (564)
Q Consensus 215 h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~ 294 (564)
....|+|+.+ |...+++|..|.+|+|||..+-.+ + ....+|++.|.|+.|. .+.+++|+
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c-------------~----~~L~GHtGSVLCLqyd--~rviisGS 254 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLEC-------------L----KILTGHTGSVLCLQYD--ERVIVSGS 254 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHH-------------H----HhhhcCCCcEEeeecc--ceEEEecC
Confidence 3467999987 567889999999999999764321 1 1234567889999985 46999999
Q ss_pred CCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc---eeEEEeecccCeEEEEcCCCc
Q 008467 295 YDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE---WKQQFEFHSGPTLDVDWRNNV 370 (564)
Q Consensus 295 ~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~ 370 (564)
.|.+|+|||.+ |....++.+|...|..+.|+. .+++++|.|.++.+||+.... +...+..|...+..+++.+.
T Consensus 255 SDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k- 331 (499)
T KOG0281|consen 255 SDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK- 331 (499)
T ss_pred CCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc-
Confidence 99999999986 677788899999999999984 599999999999999986543 33445677778888888665
Q ss_pred eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEc
Q 008467 371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS 450 (564)
Q Consensus 371 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~ 450 (564)
.++++++|.+|++|++.+...++++.||...|.|+.+. ++++++||.|.+||+||+..+.+++.+.+|..-|.++.|.
T Consensus 332 yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd 409 (499)
T KOG0281|consen 332 YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD 409 (499)
T ss_pred eEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec
Confidence 78899999999999999999999999999999999884 8999999999999999999999999999999999999996
Q ss_pred cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe---------EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467 451 PTGSGTNNPNQQLILASASFDSTVKLWDVELGK---------LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 521 (564)
Q Consensus 451 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~---------~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~ 521 (564)
.. -+++|+.||+|+|||+..+. |+.++..|.+.|..+.| |...|++++.|.+|.|||.
T Consensus 410 ~k-----------rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 410 NK-----------RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDF 476 (499)
T ss_pred Cc-----------eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEc
Confidence 43 58999999999999987653 34556678899999999 5678999999999999999
Q ss_pred CCCeE
Q 008467 522 KEGKI 526 (564)
Q Consensus 522 ~~~~~ 526 (564)
.++-.
T Consensus 477 l~~~~ 481 (499)
T KOG0281|consen 477 LNGPP 481 (499)
T ss_pred CCCCc
Confidence 87643
No 45
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.6e-32 Score=237.14 Aligned_cols=235 Identities=32% Similarity=0.638 Sum_probs=198.5
Q ss_pred CCCCeEEEEECCC-CCEEEEEeCCCeEEEEECCC-c---eeEee-cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 008467 274 KSKDVTTLDWNGE-GTLLATGSYDGQARIWSTNG-D---LKCTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 347 (564)
Q Consensus 274 ~~~~V~~l~~s~~-g~~l~sg~~dg~i~vw~~~~-~---~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~ 347 (564)
+...|..++|+|- |..||||+.|..||+|+..+ . ++..+ .+|+..|.+++|+|.|++|+++|.|.++.||.-..
T Consensus 13 h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~ 92 (312)
T KOG0645|consen 13 HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKED 92 (312)
T ss_pred CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCC
Confidence 4457999999998 99999999999999999873 2 22222 47999999999999999999999999999996443
Q ss_pred cceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEe
Q 008467 348 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 427 (564)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd 427 (564)
+++ ..+.++.||.++|.|++|+++|.+||+||.|..|-||.
T Consensus 93 ~ef---------------------------------------ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe 133 (312)
T KOG0645|consen 93 GEF---------------------------------------ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWE 133 (312)
T ss_pred Cce---------------------------------------eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEE
Confidence 321 23567899999999999999999999999999999999
Q ss_pred CCCC---eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC---CCeEEEEEeCCCCCEEEEEEc
Q 008467 428 MKQD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE---LGKLLYSLNGHREPVYSLAFS 501 (564)
Q Consensus 428 ~~~~---~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~---~~~~~~~~~~h~~~i~~~~~s 501 (564)
...+ .+...++.|.+.|..+.|+|... +|+|+|.|++|++|.-. .-.++.++.+|...|.+++|+
T Consensus 134 ~deddEfec~aVL~~HtqDVK~V~WHPt~d---------lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~ 204 (312)
T KOG0645|consen 134 IDEDDEFECIAVLQEHTQDVKHVIWHPTED---------LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFD 204 (312)
T ss_pred ecCCCcEEEEeeeccccccccEEEEcCCcc---------eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEec
Confidence 8743 45677899999999999999754 89999999999999865 346889999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 502 PTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 502 pdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
|.|..|++++.|++|+||...+. -+......++.++|. ...||++..|+.++||-
T Consensus 205 ~~G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 205 NIGSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFK 259 (312)
T ss_pred CCCceEEEecCCcceEeeeeccC---cchhcccceEeeeec--ccceEeccCCCEEEEEE
Confidence 99999999999999999986521 111224569999999 55888888999998873
No 46
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=1.4e-32 Score=259.75 Aligned_cols=304 Identities=24% Similarity=0.327 Sum_probs=236.9
Q ss_pred ceeecCCceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEE
Q 008467 201 SFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT 280 (564)
Q Consensus 201 ~~~~~~~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 280 (564)
...||..+-..|.+|+..|.++++.|.|..|+|||.|.+|++||+...... .+.++.........|.+
T Consensus 152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas------------~~~fr~l~P~E~h~i~s 219 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS------------MRSFRQLQPCETHQINS 219 (641)
T ss_pred hhcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEeccccccc------------chhhhccCcccccccce
Confidence 356888888899999999999999999999999999999999998753211 11122222234567999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEECCCceeEe-------------ecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECC
Q 008467 281 LDWNGEGTLLATGSYDGQARIWSTNGDLKCT-------------LSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVK 346 (564)
Q Consensus 281 l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~-------------~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~ 346 (564)
+.||+.|..|++.+....++|+|.+|..... -.+|...+++.+|+|..+ .|+|++.||++||||+.
T Consensus 220 l~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 220 LQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN 299 (641)
T ss_pred eeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecC
Confidence 9999999999999999999999988765432 257999999999999874 69999999999999987
Q ss_pred CcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEE
Q 008467 347 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 426 (564)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iw 426 (564)
.-+-..+.. .. +...+..-.++.++|+|||++||+|..||.|.+|
T Consensus 300 ~~k~q~qVi-----------------------------k~------k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W 344 (641)
T KOG0772|consen 300 NTKSQLQVI-----------------------------KT------KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW 344 (641)
T ss_pred CchhheeEE-----------------------------ee------ccCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence 543211110 00 0011233467889999999999999999999999
Q ss_pred eCCCCee--ee-ecccccc--cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEEeCCC--CCEEEE
Q 008467 427 NMKQDKY--VH-DLREHSK--EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHR--EPVYSL 498 (564)
Q Consensus 427 d~~~~~~--~~-~~~~~~~--~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~--~~i~~~ 498 (564)
+...... .. .-.+|.. .|++|.|+++|. +|+|-+.|+++++||++.. +++.+..+.. -+-+.+
T Consensus 345 ~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~---------~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc 415 (641)
T KOG0772|consen 345 DKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN---------YLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDC 415 (641)
T ss_pred ecCCcccccceEeeeccCCCCceeEEEeccccc---------hhhhccCCCceeeeeccccccchhhhcCCCccCCCCcc
Confidence 9754321 11 2235665 899999999986 7999999999999999864 4555554432 345788
Q ss_pred EEcCCCCEEEEEeC------CCcEEEEeCCCCeEEEEEec-CCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467 499 AFSPTGEYLASGSL------DKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVL 560 (564)
Q Consensus 499 ~~spdg~~lasgs~------dg~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~ 560 (564)
+|||+.++|++|+. .|.+.+||..+...+..+.- ...|..+.|+|.=+.|.+|++||.+.||
T Consensus 416 ~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 416 CFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred ccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 99999999999864 47899999998887776643 4568889999999999999999999886
No 47
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.2e-32 Score=232.62 Aligned_cols=265 Identities=20% Similarity=0.364 Sum_probs=226.4
Q ss_pred CEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc--eeEEEeecccCeEEE
Q 008467 288 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSGPTLDV 364 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~~~~~ 364 (564)
-+|+++++|.+||+|... |.+..+++...+.|..|...|+++.|++++. ..||+||++++. .+..|+.|...+..+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 479999999999999964 6677778777789999999999998887764 689999998876 467889999999999
Q ss_pred EcCCCce-EEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccc-ccc
Q 008467 365 DWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE-HSK 442 (564)
Q Consensus 365 ~~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~-~~~ 442 (564)
.|..+.+ ..+++.||++++|+++.....+.| .|.++|+++..+|+...|++|..+|.|++||+....+.+.+.. ...
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 9976654 578999999999999985554444 4779999999999999999999999999999998876665543 346
Q ss_pred cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC------eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008467 443 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG------KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM 516 (564)
Q Consensus 443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~------~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i 516 (564)
.|.++...|+|+ +|+.+...|+.++|++-+. +++..+..|..-|....||||+++||++|.|.++
T Consensus 169 ~i~sl~v~~dgs---------ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv 239 (311)
T KOG0315|consen 169 SIQSLTVMPDGS---------MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTV 239 (311)
T ss_pred ceeeEEEcCCCc---------EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceE
Confidence 789999999986 7888889999999998654 3456688899999999999999999999999999
Q ss_pred EEEeCCCC-eEEEEEecCC-CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 517 HIWSLKEG-KIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 517 ~iw~~~~~-~~~~~~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
+||++.+- ++...++++. .+.+.+||.||.+|++|+.|+.+++|++.
T Consensus 240 ~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 240 KIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred EEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence 99999987 5555666553 58999999999999999999999999875
No 48
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.6e-32 Score=282.13 Aligned_cols=294 Identities=27% Similarity=0.466 Sum_probs=233.0
Q ss_pred CccceEEEEECCCCCEEEEEE--CCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEE
Q 008467 215 HTSEVCACAWSPAGSLLASGS--GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT 292 (564)
Q Consensus 215 h~~~V~~~~~sp~~~~lasgs--~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~s 292 (564)
+...|++++.||+|..+|||| .|+.++||....-. ........+ +.........|...|+|+.|++||++||+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl--~~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVL--DEKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeecccccc--chhhhhhcc---cchhheeeccccCceeEEEECCCCCeEee
Confidence 456799999999999999999 99999999864311 000000000 11111122346788999999999999999
Q ss_pred EeCCCeEEEEECCC-------------------ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE
Q 008467 293 GSYDGQARIWSTNG-------------------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 353 (564)
Q Consensus 293 g~~dg~i~vw~~~~-------------------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 353 (564)
|+.|+.|.||.... +....+.+|.+.|..++|+|++.+|++++.|++|.|||.++.+
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~---- 162 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE---- 162 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccce----
Confidence 99999999998651 1456788999999999999999999999999999999987743
Q ss_pred EeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 008467 354 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 433 (564)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~ 433 (564)
.+.++.+|.+.|-.+.|+|-|++|||-++|++|+||++.....
T Consensus 163 -------------------------------------~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i 205 (942)
T KOG0973|consen 163 -------------------------------------LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI 205 (942)
T ss_pred -------------------------------------eeeeeecccccccceEECCccCeeeeecCCceEEEEEccccee
Confidence 2456788999999999999999999999999999999887777
Q ss_pred eeeccccc------ccEEEEEEccCCCCCCCCCCcEEEEEEe----CCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCC
Q 008467 434 VHDLREHS------KEIYTIRWSPTGSGTNNPNQQLILASAS----FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT 503 (564)
Q Consensus 434 ~~~~~~~~------~~i~~i~~~p~~~~~~~~~~~~~l~s~s----~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spd 503 (564)
.+.+..+- ..++.+.|+|+|. +|++.. .-.++.|.+-.+.+.-..+-||..|+.+++|+|.
T Consensus 206 ~k~It~pf~~~~~~T~f~RlSWSPDG~---------~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~ 276 (942)
T KOG0973|consen 206 EKSITKPFEESPLTTFFLRLSWSPDGH---------HLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPK 276 (942)
T ss_pred eEeeccchhhCCCcceeeecccCCCcC---------eecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChH
Confidence 77666543 3467899999996 455432 2346888887777777889999999999999982
Q ss_pred --------C-----C----EEEEEeCCCcEEEEeCCCCeEEEEEe--cCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 504 --------G-----E----YLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 504 --------g-----~----~lasgs~dg~i~iw~~~~~~~~~~~~--~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
| . .+|+||.|++|.||.....+.+-... .+..|.+++|+|||-.|.+|+.||+|.++.|.
T Consensus 277 lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 277 LFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred HhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 1 1 57899999999999987666443322 24679999999999999999999999999884
No 49
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.6e-32 Score=276.63 Aligned_cols=240 Identities=40% Similarity=0.696 Sum_probs=215.4
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-c--eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCccee
Q 008467 275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-D--LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 351 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 351 (564)
...|+++.|+++|+.+++++.++.+++|+... . ....+.+|...|..++|+|++.++++++.|++++|||+...
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~--- 235 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD--- 235 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC---
Confidence 56799999999999999999999999999743 3 45566899999999999999999999999999999998332
Q ss_pred EEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008467 352 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 431 (564)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~ 431 (564)
...++++.||...|++++|+|+|+++++|+.|++|+|||++++
T Consensus 236 -------------------------------------~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~ 278 (456)
T KOG0266|consen 236 -------------------------------------GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG 278 (456)
T ss_pred -------------------------------------CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC
Confidence 2345778899999999999999999999999999999999999
Q ss_pred eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEEEeCCCCC--EEEEEEcCCCCEE
Q 008467 432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYSLNGHREP--VYSLAFSPTGEYL 507 (564)
Q Consensus 432 ~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~--i~~~~~spdg~~l 507 (564)
+++..+.+|...|.+++|++++. +|++++.|+.|+|||+.++. ++..+.++..+ ++++.|+|+|.+|
T Consensus 279 ~~~~~l~~hs~~is~~~f~~d~~---------~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~l 349 (456)
T KOG0266|consen 279 ECVRKLKGHSDGISGLAFSPDGN---------LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYL 349 (456)
T ss_pred eEEEeeeccCCceEEEEECCCCC---------EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEE
Confidence 99999999999999999999986 78899999999999999999 56777766655 9999999999999
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEEecCC----CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 508 ASGSLDKSMHIWSLKEGKIVKTYTGNG----GIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 508 asgs~dg~i~iw~~~~~~~~~~~~~~~----~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
++++.|+.+++|++..++.+..+.++. +++....++.|..+.+|+.|+.|.+||..
T Consensus 350 l~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 350 LSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred EEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCC
Confidence 999999999999999999998887643 45666778999999999999999999974
No 50
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-32 Score=250.49 Aligned_cols=253 Identities=28% Similarity=0.468 Sum_probs=231.7
Q ss_pred EECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCC-ceEEEEeCCCe
Q 008467 302 WSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNM 380 (564)
Q Consensus 302 w~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~ 380 (564)
|-....+...+.+|..+|+.+.|+|+-..+++++.|.+|++||..++++...+..|...+.++.+... ..+++|+.|-.
T Consensus 94 wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~ 173 (406)
T KOG0295|consen 94 WIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLS 173 (406)
T ss_pred cCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccc
Confidence 54444566778889999999999999999999999999999999999999999999999999998654 56788999999
Q ss_pred EEEEEcCC-CceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCC
Q 008467 381 IYVCKIGE-NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNP 459 (564)
Q Consensus 381 i~~~~~~~-~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~ 459 (564)
+.+|+..+ -..++.+.||...|.+++|-|.|.+|+||+.|.+|+.|++.++.++.+|.+|...+..++...+|.
T Consensus 174 ~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt----- 248 (406)
T KOG0295|consen 174 AKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT----- 248 (406)
T ss_pred hhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee-----
Confidence 99999977 457788889999999999999999999999999999999999999999999999999999888875
Q ss_pred CCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCC---------------CCEEEEEeCCCcEEEEeCCCC
Q 008467 460 NQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT---------------GEYLASGSLDKSMHIWSLKEG 524 (564)
Q Consensus 460 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spd---------------g~~lasgs~dg~i~iw~~~~~ 524 (564)
++|+|+.|.+|++|-+.++++...++.|.-+|.+++|.|. |+++++++.|++|++||+.+|
T Consensus 249 ----i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg 324 (406)
T KOG0295|consen 249 ----IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG 324 (406)
T ss_pred ----EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC
Confidence 8999999999999999999999999999999999999763 259999999999999999999
Q ss_pred eEEEEEecCC-CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 525 KIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 525 ~~~~~~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
.++-++.++. .|.+++|+|.|++|++|..|++++|||++
T Consensus 325 ~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 325 MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK 364 (406)
T ss_pred eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence 9999988764 69999999999999999999999999986
No 51
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3.3e-31 Score=230.48 Aligned_cols=277 Identities=24% Similarity=0.450 Sum_probs=232.8
Q ss_pred eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-CCC
Q 008467 210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGT 288 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~ 288 (564)
.-+.+|...|..++|+.+|..||+|+.|+++++|++...... ......++...|-.++|+| ...
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~---------------~~~~~~gh~~svdql~w~~~~~d 78 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR---------------KELVYRGHTDSVDQLCWDPKHPD 78 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh---------------hhhcccCCCcchhhheeCCCCCc
Confidence 346789999999999999999999999999999998754211 1112234567788899988 567
Q ss_pred EEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc-
Q 008467 289 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW- 366 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~- 366 (564)
+|++++.|..|++||.. ++........ +.-.-+.|+|+|.+++.++.|..|.+.|.++.+.....++... +..+.|
T Consensus 79 ~~atas~dk~ir~wd~r~~k~~~~i~~~-~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e-~ne~~w~ 156 (313)
T KOG1407|consen 79 LFATASGDKTIRIWDIRSGKCTARIETK-GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFE-VNEISWN 156 (313)
T ss_pred ceEEecCCceEEEEEeccCcEEEEeecc-CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccce-eeeeeec
Confidence 99999999999999965 4444444433 3344578999999999999999999999998877765554433 344555
Q ss_pred CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEE
Q 008467 367 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 446 (564)
Q Consensus 367 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 446 (564)
.++..|....+.|.|.+.....-+|+..+..|.....||.|+|+|++||+|+.|-.+.+||+..--+++.+.-+.-+|.+
T Consensus 157 ~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRT 236 (313)
T KOG1407|consen 157 NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRT 236 (313)
T ss_pred CCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEE
Confidence 45566777778899999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC
Q 008467 447 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 513 (564)
Q Consensus 447 i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d 513 (564)
+.|+.+|. +||+||.|..|-|=++++|..++.+. +.++-+.++|+|...+||-+..|
T Consensus 237 lSFS~dg~---------~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 237 LSFSHDGR---------MLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred EEeccCcc---------eeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 99999986 89999999999999999999999987 78899999999999999877655
No 52
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-31 Score=262.20 Aligned_cols=285 Identities=25% Similarity=0.402 Sum_probs=245.7
Q ss_pred eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467 210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 289 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 289 (564)
..+.||...|.++++|.+...++||+ .+.++||+..+.+++.+ . ....+.+..|-|.+++
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRT-------------i------~~~y~l~~~Fvpgd~~ 426 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRT-------------I------TCGYILASKFVPGDRY 426 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEE-------------e------ccccEEEEEecCCCce
Confidence 45679999999999999999999876 46799999887654321 1 1236889999999999
Q ss_pred EEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC-----cceeEEEee-------
Q 008467 290 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-----EEWKQQFEF------- 356 (564)
Q Consensus 290 l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-----~~~~~~~~~------- 356 (564)
+++|...|.+.++|.. ..+..+...|.+.|++++.+|++..+++||.|++|++||..- +...+.+..
T Consensus 427 Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe 506 (888)
T KOG0306|consen 427 IVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE 506 (888)
T ss_pred EEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe
Confidence 9999999999999975 456667789999999999999999999999999999999642 211111211
Q ss_pred cccCeEEEEcCCCceE-EEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeee
Q 008467 357 HSGPTLDVDWRNNVSF-ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 435 (564)
Q Consensus 357 ~~~~~~~~~~~~~~~~-~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~ 435 (564)
-...++++...++..| +.+--|+++.+|-+++-+-...+.||.-+|.|+..+||+++++|||.|..|+||-+.-+.|-.
T Consensus 507 l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHK 586 (888)
T KOG0306|consen 507 LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHK 586 (888)
T ss_pred ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhh
Confidence 1345778888766555 666789999999999988888999999999999999999999999999999999999999999
Q ss_pred ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 008467 436 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS 515 (564)
Q Consensus 436 ~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~ 515 (564)
.+.+|...|+++.|.|.. +++.+|+.|+.|+-||-.+-+++..+.+|...|++++.+|+|.|++++|.|.+
T Consensus 587 S~fAHdDSvm~V~F~P~~---------~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~s 657 (888)
T KOG0306|consen 587 SFFAHDDSVMSVQFLPKT---------HLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKS 657 (888)
T ss_pred hhhcccCceeEEEEcccc---------eeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCce
Confidence 999999999999999964 37889999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCC
Q 008467 516 MHIWSLKE 523 (564)
Q Consensus 516 i~iw~~~~ 523 (564)
|++|...+
T Consensus 658 IRlwE~td 665 (888)
T KOG0306|consen 658 IRLWERTD 665 (888)
T ss_pred eEeeeccC
Confidence 99998755
No 53
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.8e-32 Score=252.82 Aligned_cols=290 Identities=23% Similarity=0.390 Sum_probs=234.5
Q ss_pred eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEE-e-ecccc--ccCCCCeEEEEEC
Q 008467 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLK-H-VKGRT--NEKSKDVTTLDWN 284 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~--~~~~~~V~~l~~s 284 (564)
+..+..|.-+|.+|+++|++++.++++.||+|.-|++.++.........+ .+++ + .+... ..|.+.|.+++.|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~---ev~k~~~~~~k~~r~~h~keil~~avS 211 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD---EVLKSHGNPLKESRKGHVKEILTLAVS 211 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc---hhhhhccCCCCcccccccceeEEEEEc
Confidence 46778899999999999999999999999999999998876432111110 0001 0 00011 2567889999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEE
Q 008467 285 GEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 363 (564)
Q Consensus 285 ~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 363 (564)
+||++||+|+.|..|.||+... .....+.+|.++|.+++|-...+.+++++.|++|++|++....+
T Consensus 212 ~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~------------- 278 (479)
T KOG0299|consen 212 SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY------------- 278 (479)
T ss_pred CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-------------
Confidence 9999999999999999999764 45667899999999999999989999999999999999875443
Q ss_pred EEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccccccc
Q 008467 364 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE 443 (564)
Q Consensus 364 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~ 443 (564)
+.++.||.+.|.+|.-..-++.+-.|+.|+++++|++... ....+++|.+.
T Consensus 279 ----------------------------vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~s 329 (479)
T KOG0299|consen 279 ----------------------------VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGS 329 (479)
T ss_pred ----------------------------HHHHhCCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCC
Confidence 3456788888888887777777777779999999999433 33467888889
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe-CC-----------CCCEEEEEEcCCCCEEEEEe
Q 008467 444 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GH-----------REPVYSLAFSPTGEYLASGS 511 (564)
Q Consensus 444 i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h-----------~~~i~~~~~spdg~~lasgs 511 (564)
+-|++|..+. .+++||.||.|.+|++.+.+++++.. +| ...|++++..|...++|+||
T Consensus 330 idcv~~In~~----------HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS 399 (479)
T KOG0299|consen 330 IDCVAFINDE----------HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS 399 (479)
T ss_pred eeeEEEeccc----------ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC
Confidence 9999997654 48899999999999999888887653 22 12789999999999999999
Q ss_pred CCCcEEEEeCCCC----eEEEEEecCCCEEEEEEccCCCEEEEEEc
Q 008467 512 LDKSMHIWSLKEG----KIVKTYTGNGGIFEVCWNKEGDKIAACFA 553 (564)
Q Consensus 512 ~dg~i~iw~~~~~----~~~~~~~~~~~i~~~~w~~~g~~la~~~~ 553 (564)
.+|.|++|.+.+| .++..+.-.+-|++|+|+++|++|++|.+
T Consensus 400 ~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 400 WSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred CCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecc
Confidence 9999999999988 45666666788999999999998777743
No 54
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=7.3e-33 Score=255.30 Aligned_cols=290 Identities=22% Similarity=0.372 Sum_probs=244.1
Q ss_pred eecCCceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEE
Q 008467 203 EIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD 282 (564)
Q Consensus 203 ~~~~~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 282 (564)
.+|......+..|.+.|..+.|-++...|+||+.|..|++|++...+.. ..+...+....|++++
T Consensus 162 ~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~---------------~~~tLaGs~g~it~~d 226 (459)
T KOG0288|consen 162 TLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE---------------LISTLAGSLGNITSID 226 (459)
T ss_pred ccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhh---------------hhhhhhccCCCcceee
Confidence 4666667788999999999999999999999999999999998654311 1111223456799999
Q ss_pred ECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCe
Q 008467 283 WNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 361 (564)
Q Consensus 283 ~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 361 (564)
|.+++..++.++.|+.+++|+.+ ..+..++.+|++.|++++|......+++|+.|.++++||+....+.+++.... ..
T Consensus 227 ~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S-~c 305 (459)
T KOG0288|consen 227 FDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS-QC 305 (459)
T ss_pred ecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccc-cc
Confidence 99999999999999999999986 46777899999999999999888889999999999999999877766543322 22
Q ss_pred EEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc-
Q 008467 362 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH- 440 (564)
Q Consensus 362 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~- 440 (564)
.++... ...++++..|+.|++||+....+......+. .|+++..++++..|.+++.|.++.+.|+++....+.+.+.
T Consensus 306 nDI~~~-~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g 383 (459)
T KOG0288|consen 306 NDIVCS-ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEG 383 (459)
T ss_pred cceEec-ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccc
Confidence 233222 5678899999999999999988888887765 9999999999999999999999999999999888877643
Q ss_pred ---cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCC--CEEEEEEcCCCCEEEEEeCCCc
Q 008467 441 ---SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE--PVYSLAFSPTGEYLASGSLDKS 515 (564)
Q Consensus 441 ---~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~--~i~~~~~spdg~~lasgs~dg~ 515 (564)
....+.+.|+|++. |+++||.||.|+||++.++++...+..... .|++++|+|.|.+|++++.++.
T Consensus 384 ~k~asDwtrvvfSpd~~---------YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~ 454 (459)
T KOG0288|consen 384 FKCASDWTRVVFSPDGS---------YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKA 454 (459)
T ss_pred cccccccceeEECCCCc---------eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcc
Confidence 23367889999886 899999999999999999999888766554 4999999999999999999999
Q ss_pred EEEE
Q 008467 516 MHIW 519 (564)
Q Consensus 516 i~iw 519 (564)
+.+|
T Consensus 455 v~lW 458 (459)
T KOG0288|consen 455 VTLW 458 (459)
T ss_pred eEec
Confidence 9999
No 55
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-31 Score=267.55 Aligned_cols=278 Identities=24% Similarity=0.392 Sum_probs=245.4
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE
Q 008467 275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 353 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 353 (564)
+..|..++|+|.-.+++++-.+|.|++||.. +.+...|..|.+||.++.|+|....|+||+.|..|++|+..+..+..+
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft 88 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT 88 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh
Confidence 5678999999999999999999999999965 567778999999999999999999999999999999999999999999
Q ss_pred EeecccCeEEEEcCCCc-eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467 354 FEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 432 (564)
Q Consensus 354 ~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~ 432 (564)
+..|..-+..+.|+... -++++|+|.+|++|+..+.+.+..+.||...|.|.+|+|...+++|+|-|.+|||||+..-+
T Consensus 89 L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLR 168 (1202)
T KOG0292|consen 89 LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLR 168 (1202)
T ss_pred hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchh
Confidence 99999988888887665 56788999999999999999999999999999999999999999999999999999974210
Q ss_pred ----------------------------e-eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe
Q 008467 433 ----------------------------Y-VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 483 (564)
Q Consensus 433 ----------------------------~-~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 483 (564)
. -+.+.+|...|.-++|+|.-. +++||+.|..|++|.+...+
T Consensus 169 kk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp---------liVSG~DDRqVKlWrmnetK 239 (1202)
T KOG0292|consen 169 KKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP---------LIVSGADDRQVKLWRMNETK 239 (1202)
T ss_pred ccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc---------eEEecCCcceeeEEEecccc
Confidence 1 134567888899999998764 79999999999999886443
Q ss_pred --EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467 484 --LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVL 560 (564)
Q Consensus 484 --~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~ 560 (564)
.+-++.+|..+|.++-|+|....|.+.|.|++|+|||....+.+++|.. +..-+-++-+|..+.+|+|..+| +.||
T Consensus 240 aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG-m~VF 318 (1202)
T KOG0292|consen 240 AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG-MIVF 318 (1202)
T ss_pred ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCc-eEEE
Confidence 2456789999999999999999999999999999999999999999964 56788999999999999996555 6666
Q ss_pred Ee
Q 008467 561 DF 562 (564)
Q Consensus 561 ~~ 562 (564)
-+
T Consensus 319 kl 320 (1202)
T KOG0292|consen 319 KL 320 (1202)
T ss_pred EE
Confidence 54
No 56
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.6e-31 Score=262.78 Aligned_cols=283 Identities=21% Similarity=0.364 Sum_probs=245.2
Q ss_pred cCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEE
Q 008467 213 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT 292 (564)
Q Consensus 213 ~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~s 292 (564)
...+..|-.++|||...+++++=-.|.|.+||..=+.. ..+..+|.++|..++|+|+..+++|
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tl-----------------i~rFdeHdGpVRgv~FH~~qplFVS 68 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL-----------------IDRFDEHDGPVRGVDFHPTQPLFVS 68 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhhH-----------------HhhhhccCCccceeeecCCCCeEEe
Confidence 34557788999999999999999999999999753321 1234567899999999999999999
Q ss_pred EeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC-Cc
Q 008467 293 GSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NV 370 (564)
Q Consensus 293 g~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~ 370 (564)
|+.|-.|+||+.. .++..++.+|-.-|..+.|++.-.+|+|+|.|.||+||+..++.++..+..|.--+++..|++ ..
T Consensus 69 GGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED 148 (1202)
T KOG0292|consen 69 GGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED 148 (1202)
T ss_pred cCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc
Confidence 9999999999965 456678999999999999999999999999999999999999999999999999999999987 67
Q ss_pred eEEEEeCCCeEEEEEcCCCc-----------------------------eeeEecCCCcceEEEEECCCCCEEEEEeCCC
Q 008467 371 SFATSSTDNMIYVCKIGENR-----------------------------PIKTFAGHQGEVNCVKWDPTGSLLASCSDDV 421 (564)
Q Consensus 371 ~~~~~~~d~~i~~~~~~~~~-----------------------------~~~~~~~h~~~i~~v~~~~~~~~las~s~dg 421 (564)
.++++|-|.+|++||+..-+ .-..+.||...|+-++|+|.-.+|+||++|.
T Consensus 149 lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDR 228 (1202)
T KOG0292|consen 149 LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDR 228 (1202)
T ss_pred eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcc
Confidence 88999999999999985310 1135679999999999999999999999999
Q ss_pred cEEEEeCCCCe--eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEE
Q 008467 422 TAKIWNMKQDK--YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA 499 (564)
Q Consensus 422 ~i~iwd~~~~~--~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~ 499 (564)
.|++|.++..+ .+.+.++|...|.++-|+|... +++|.|.|++|||||+...+.+.+++......+.++
T Consensus 229 qVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~---------lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~la 299 (1202)
T KOG0292|consen 229 QVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD---------LILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILA 299 (1202)
T ss_pred eeeEEEeccccceeehhhhcccCCcceEEecCccc---------eeEecCCCccEEEEecccccceeeeeccCCeEEEEE
Confidence 99999987544 3567889999999999998643 788999999999999999999999987778899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCC
Q 008467 500 FSPTGEYLASGSLDKSMHIWSLK 522 (564)
Q Consensus 500 ~spdg~~lasgs~dg~i~iw~~~ 522 (564)
-+|..+++|+|-+.| +.+|.++
T Consensus 300 ahP~lNLfAAgHDsG-m~VFkle 321 (1202)
T KOG0292|consen 300 AHPELNLFAAGHDSG-MIVFKLE 321 (1202)
T ss_pred ecCCcceeeeecCCc-eEEEEEc
Confidence 999999988765444 6677765
No 57
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.7e-31 Score=242.50 Aligned_cols=274 Identities=30% Similarity=0.520 Sum_probs=228.4
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCC---EEEEeeCCCcEEEEECCCcce
Q 008467 274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD---YLLTGSCDKTAIVWDVKTEEW 350 (564)
Q Consensus 274 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~---~l~s~s~D~~v~iwd~~~~~~ 350 (564)
|...|.++.-. +..+++|++||.+|+|+..|+....+.+|.++|.++.|.-.+. .|+++|.|.++++|-.+.++.
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~ 181 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGEN 181 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchh
Confidence 34566666655 6899999999999999999999999999999999998865443 599999999999998776543
Q ss_pred ----eEEEeecccCeEEEEc-CCCceEEEEeCCCeEEEEEcC-------------------------CCceeeEecCCCc
Q 008467 351 ----KQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIG-------------------------ENRPIKTFAGHQG 400 (564)
Q Consensus 351 ----~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~-------------------------~~~~~~~~~~h~~ 400 (564)
......|..++-++.- .+...|++++-|.++.+|+.. ...|+.++.||..
T Consensus 182 ~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~ 261 (423)
T KOG0313|consen 182 KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTE 261 (423)
T ss_pred hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccc
Confidence 2334578888888884 567899999999999999921 1236788999999
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC
Q 008467 401 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 480 (564)
Q Consensus 401 ~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 480 (564)
.|.++.|++ ...+.++|.|.+|+.||+.+++...++.. ...+.++.++|... +|++|+.|..|++||.+
T Consensus 262 ~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~---------Ll~~gssdr~irl~DPR 330 (423)
T KOG0313|consen 262 PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSK---------LLASGSSDRHIRLWDPR 330 (423)
T ss_pred ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccc---------eeeecCCCCceeecCCC
Confidence 999999997 67788999999999999999988877654 46789999988654 79999999999999998
Q ss_pred CCe---EEEEEeCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCe-EEEEEec-CCCEEEEEEccCCCEEEEEEcC
Q 008467 481 LGK---LLYSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSLKEGK-IVKTYTG-NGGIFEVCWNKEGDKIAACFAN 554 (564)
Q Consensus 481 ~~~---~~~~~~~h~~~i~~~~~spdg~-~lasgs~dg~i~iw~~~~~~-~~~~~~~-~~~i~~~~w~~~g~~la~~~~~ 554 (564)
++. ..+++.+|...|.++.|+|... .|++|+.|+++++||+++-+ .+..+.+ +..|+++.|+ +|..+++|+.|
T Consensus 331 ~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD 409 (423)
T KOG0313|consen 331 TGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGAD 409 (423)
T ss_pred CCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCc
Confidence 753 4578899999999999999874 57899999999999999876 5555544 4569999997 45688899999
Q ss_pred CcEEEEE
Q 008467 555 HTVCVLD 561 (564)
Q Consensus 555 ~~v~v~~ 561 (564)
.++.|+.
T Consensus 410 ~~l~i~~ 416 (423)
T KOG0313|consen 410 NKLRIFK 416 (423)
T ss_pred ceEEEec
Confidence 9999874
No 58
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-31 Score=245.84 Aligned_cols=279 Identities=23% Similarity=0.395 Sum_probs=232.5
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC----CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc
Q 008467 273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN----GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 348 (564)
Q Consensus 273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~ 348 (564)
.|...|..+.||++|++||||+.|.+..+|.+. -+++.++.+|..+|..+.|+||.++|++|+.|..+++||+.+|
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg 301 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG 301 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcc
Confidence 467889999999999999999999999999753 2456788999999999999999999999999999999999999
Q ss_pred ceeEEEeec-ccCeEEEEcCC-CceEEEEeCCCeEEEEEcCCCceeeEecCCC-cceEEEEECCCCCEEEEEeCCCcEEE
Q 008467 349 EWKQQFEFH-SGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKI 425 (564)
Q Consensus 349 ~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~i~~v~~~~~~~~las~s~dg~i~i 425 (564)
.....+... ...+.+..|.+ ...|++++.|+.+..|+.+.+. ...+.|-. ..|.+++..+||+.+++...|..|++
T Consensus 302 d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l 380 (519)
T KOG0293|consen 302 DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRL 380 (519)
T ss_pred hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccceee
Confidence 988776544 45677888854 5689999999999999997654 23334332 35889999999999999999999999
Q ss_pred EeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCC--EEEEEEcC-
Q 008467 426 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP--VYSLAFSP- 502 (564)
Q Consensus 426 wd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~--i~~~~~sp- 502 (564)
++..+...+..+ ....+|+++..+.++. ++++.-.+..|++||++..+.+..+.||... |-.-+|.-
T Consensus 381 ~~~e~~~dr~li-se~~~its~~iS~d~k---------~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~ 450 (519)
T KOG0293|consen 381 YNREARVDRGLI-SEEQPITSFSISKDGK---------LALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGG 450 (519)
T ss_pred echhhhhhhccc-cccCceeEEEEcCCCc---------EEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCC
Confidence 998765544333 3456899999988775 5556667899999999988888888888765 33345653
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC-CEEEEEEccCC-CEEEEEEcCCcEEEEEe
Q 008467 503 TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEG-DKIAACFANHTVCVLDF 562 (564)
Q Consensus 503 dg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~-~i~~~~w~~~g-~~la~~~~~~~v~v~~~ 562 (564)
+..++|+||.|+.|+||+..+|+++..+.++. .++.++|+|.. .++|+++.||+|+||..
T Consensus 451 ~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 451 NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred CcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 45899999999999999999999999999875 58999999976 58899999999999964
No 59
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-30 Score=256.85 Aligned_cols=327 Identities=23% Similarity=0.351 Sum_probs=248.8
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467 217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 296 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 296 (564)
.+|+|++-+|+.-+||.|-.||.|+||++.+... + -..++|...|+++.|...|..|+|||.|
T Consensus 66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~-------------~----~tfngHK~AVt~l~fd~~G~rlaSGskD 128 (888)
T KOG0306|consen 66 AEVTCLRSSDDILLLAVGYADGSVQIFSLESEEI-------------L----ITFNGHKAAVTTLKFDKIGTRLASGSKD 128 (888)
T ss_pred ceEEEeeccCCcceEEEEecCceEEeeccCCCce-------------e----eeecccccceEEEEEcccCceEeecCCC
Confidence 5789998889999999999999999999875421 0 1124567899999999999999999999
Q ss_pred CeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccC---------------
Q 008467 297 GQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP--------------- 360 (564)
Q Consensus 297 g~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~--------------- 360 (564)
+.|.+||.-+ .-...+.+|+..|+...|....+++++.|.|+.+++||+.+..+..+.-.|.+.
T Consensus 129 t~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~ 208 (888)
T KOG0306|consen 129 TDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAG 208 (888)
T ss_pred ccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEe
Confidence 9999999754 345689999999999999988899999999999999999875433221111000
Q ss_pred --------------------------------------------------------------------------------
Q 008467 361 -------------------------------------------------------------------------------- 360 (564)
Q Consensus 361 -------------------------------------------------------------------------------- 360 (564)
T Consensus 209 ~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k 288 (888)
T KOG0306|consen 209 TDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLK 288 (888)
T ss_pred cCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHH
Confidence
Q ss_pred ----------------------------------eEEEEcC---------------------------------------
Q 008467 361 ----------------------------------TLDVDWR--------------------------------------- 367 (564)
Q Consensus 361 ----------------------------------~~~~~~~--------------------------------------- 367 (564)
+.+++|.
T Consensus 289 ~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~ 368 (888)
T KOG0306|consen 289 RAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIE 368 (888)
T ss_pred HhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceee
Confidence 0001110
Q ss_pred --------------CCceEEEEeCCCeEEEEEcCCCceeeE---------------------------------------
Q 008467 368 --------------NNVSFATSSTDNMIYVCKIGENRPIKT--------------------------------------- 394 (564)
Q Consensus 368 --------------~~~~~~~~~~d~~i~~~~~~~~~~~~~--------------------------------------- 394 (564)
.+..++.++..+.+.+|+..+.+.+++
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E 448 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVE 448 (888)
T ss_pred eccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhh
Confidence 001123344556788888776554433
Q ss_pred -ecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC-------Ceeeeec-----ccccccEEEEEEccCCCCC-----
Q 008467 395 -FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ-------DKYVHDL-----REHSKEIYTIRWSPTGSGT----- 456 (564)
Q Consensus 395 -~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~-------~~~~~~~-----~~~~~~i~~i~~~p~~~~~----- 456 (564)
...|.+.|.+++.+||++.++|||.|.+|++||..- .+.+-.+ -.-...|.++.+||++.-.
T Consensus 449 ti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLL 528 (888)
T KOG0306|consen 449 TIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLL 528 (888)
T ss_pred hhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEec
Confidence 246889999999999999999999999999998631 1000000 0112345555555554310
Q ss_pred -----------------------------CCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEE
Q 008467 457 -----------------------------NNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL 507 (564)
Q Consensus 457 -----------------------------~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~l 507 (564)
.+|+. .+++|||.|.+|+||-++-|.|-.++-+|.+.|.++.|-|...++
T Consensus 529 dnTVkVyflDtlKFflsLYGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~F 607 (888)
T KOG0306|consen 529 DNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLF 607 (888)
T ss_pred cCeEEEEEecceeeeeeecccccceeEEeccCCc-CeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeE
Confidence 01222 268999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 508 ASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 508 asgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
.++|.|+.|+-||-..-+.++.+.++ ..|++++-+|.|.++++|+.|.++++|.
T Consensus 608 Ft~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 608 FTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 99999999999999998888888875 4699999999999999999999999985
No 60
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-30 Score=224.19 Aligned_cols=280 Identities=24% Similarity=0.382 Sum_probs=231.5
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEC-CCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCccee
Q 008467 273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 351 (564)
Q Consensus 273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 351 (564)
+|..+++.+.++.+|.+|.+++.|..+.||-. +|..+-++.+|+++|+++..+-+.+++++|++|.++++||+.+|+.+
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~l 87 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQL 87 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEE
Confidence 46788999999999999999999999999975 89999999999999999999999999999999999999999999988
Q ss_pred EEEeecccCeEEEEcCCCceEEEEe------CCCeEEEEEcC-------CCceeeEecCCCcceEEEEECCCCCEEEEEe
Q 008467 352 QQFEFHSGPTLDVDWRNNVSFATSS------TDNMIYVCKIG-------ENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 418 (564)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~i~~~~~~-------~~~~~~~~~~h~~~i~~v~~~~~~~~las~s 418 (564)
..+.... ++..++|.....++..+ ..+.|.++++. ...|+..+..+.+.++.+-|.|-+++|++|.
T Consensus 88 a~~k~~~-~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh 166 (327)
T KOG0643|consen 88 ATWKTNS-PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH 166 (327)
T ss_pred EEeecCC-eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec
Confidence 8776533 45556664433333322 23467888887 4567888888999999999999999999999
Q ss_pred CCCcEEEEeCCCC-eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEE
Q 008467 419 DDVTAKIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS 497 (564)
Q Consensus 419 ~dg~i~iwd~~~~-~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~ 497 (564)
+||.|.+||.+++ ..+...+.|...|..++++|+.. +++++|.|.+-++||+++-+++.++. ...||++
T Consensus 167 e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T---------~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~ 236 (327)
T KOG0643|consen 167 EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT---------YFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNT 236 (327)
T ss_pred CCCcEEEEEcccCceeeechhhhccccccccccCCcc---------eEEecccCccceeeeccceeeEEEee-ecccccc
Confidence 9999999999997 45666678999999999999875 89999999999999999999988887 4579999
Q ss_pred EEEcCCCCEEEEEeCCCc--EEEEeCCCCeEEE------------EEec-CCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 498 LAFSPTGEYLASGSLDKS--MHIWSLKEGKIVK------------TYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 498 ~~~spdg~~lasgs~dg~--i~iw~~~~~~~~~------------~~~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
.+++|.-.+++.|+...- |.--+.+.|+... .+.+ -++|++++|+|+|+..++|..||.|+|..|
T Consensus 237 aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 237 AAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred eecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEe
Confidence 999999888887765432 3333334443322 2223 367999999999999999999999999876
Q ss_pred e
Q 008467 563 R 563 (564)
Q Consensus 563 ~ 563 (564)
.
T Consensus 317 d 317 (327)
T KOG0643|consen 317 D 317 (327)
T ss_pred c
Confidence 4
No 61
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.98 E-value=2.1e-30 Score=263.93 Aligned_cols=271 Identities=30% Similarity=0.516 Sum_probs=240.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEe-ecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeE
Q 008467 275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 352 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~ 352 (564)
...+++..|. +.++++++.+++|++|+.. +..... +.+|.+.|+++++..-+..+++|+.|+++++||..++.+..
T Consensus 208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~ 285 (537)
T KOG0274|consen 208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH 285 (537)
T ss_pred cchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE
Confidence 4568888888 5689999999999999964 455555 99999999999999878899999999999999999999999
Q ss_pred EEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467 353 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 432 (564)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~ 432 (564)
.+..|...+..++-. ...+++++.|.+|++|++.++..+..+.||.+.|+++..+ +.++++|+.|++|++||..+++
T Consensus 286 ~l~gh~stv~~~~~~-~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~ 362 (537)
T KOG0274|consen 286 SLQGHTSSVRCLTID-PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGK 362 (537)
T ss_pred EecCCCceEEEEEcc-CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhce
Confidence 999999888777653 3456668899999999999999999999999999999997 8899999999999999999999
Q ss_pred eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 008467 433 YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGS 511 (564)
Q Consensus 433 ~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~spdg~~lasgs 511 (564)
+++++++|...|+++.+.+. ..+++|+.|++|++||+++. +++.++.+|..-+..+.+ .+++|++++
T Consensus 363 cl~sl~gH~~~V~sl~~~~~----------~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~ 430 (537)
T KOG0274|consen 363 CLKSLSGHTGRVYSLIVDSE----------NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSS 430 (537)
T ss_pred eeeeecCCcceEEEEEecCc----------ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecc
Confidence 99999999999999987653 16899999999999999999 999999999988866655 678999999
Q ss_pred CCCcEEEEeCCCCeEEEEEecC--CCEEEEEEccCCCEEEEEEcCCcEEEEEeeC
Q 008467 512 LDKSMHIWSLKEGKIVKTYTGN--GGIFEVCWNKEGDKIAACFANHTVCVLDFRM 564 (564)
Q Consensus 512 ~dg~i~iw~~~~~~~~~~~~~~--~~i~~~~w~~~g~~la~~~~~~~v~v~~~~~ 564 (564)
.|++|++||..++++++++.+. +.|..+++. -..+++++.++.+.+||+++
T Consensus 431 aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 431 ADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred ccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 9999999999999999999873 678888887 45777778999999999974
No 62
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=7.5e-31 Score=227.39 Aligned_cols=275 Identities=23% Similarity=0.392 Sum_probs=222.8
Q ss_pred EEEEECC-CCCEEEEEe-------CCCeEEEEECC-CceeEee--cCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECC
Q 008467 279 TTLDWNG-EGTLLATGS-------YDGQARIWSTN-GDLKCTL--SKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVK 346 (564)
Q Consensus 279 ~~l~~s~-~g~~l~sg~-------~dg~i~vw~~~-~~~~~~~--~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~ 346 (564)
.++.||| -.++||.+. ..|.+.|-+.. +.-+..+ -.-...++.++|+++. +.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 4677887 223344332 35788888874 2222221 2345789999999975 678999999999999964
Q ss_pred C-cceeEEEeecccCeEEEEcC--CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC-CCEEEEEeCCCc
Q 008467 347 T-EEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVT 422 (564)
Q Consensus 347 ~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~-~~~las~s~dg~ 422 (564)
. ...+..+.-|...+.+++|. ....|++++-|++|++|+...++.+.+|.||..-|..++|+|. .++++++|.|++
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 3 34566778889999999995 4567899999999999999999999999999999999999994 689999999999
Q ss_pred EEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEEeCCCCCEEEEEEc
Q 008467 423 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFS 501 (564)
Q Consensus 423 i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~s 501 (564)
+++||++.......+..|..+|.+..|+.-.. .+|+||+.|+.||+||+++- ..+..+.+|.-.|..++||
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~--------~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~S 243 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH--------NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFS 243 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCC--------cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecC
Confidence 99999986555555889999999999986542 48999999999999999874 4588999999999999999
Q ss_pred CCC-CEEEEEeCCCcEEEEeCCCC-eEEEEEecCCC-EEEEEEcc-CCCEEEEEEcCCcEEEEE
Q 008467 502 PTG-EYLASGSLDKSMHIWSLKEG-KIVKTYTGNGG-IFEVCWNK-EGDKIAACFANHTVCVLD 561 (564)
Q Consensus 502 pdg-~~lasgs~dg~i~iw~~~~~-~~~~~~~~~~~-i~~~~w~~-~g~~la~~~~~~~v~v~~ 561 (564)
|.. ..||+++.|-+++|||...+ .++.++..+.. +..+.||+ ++..+|.++.|+.+.||+
T Consensus 244 ph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 244 PHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred cchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 975 78899999999999999854 34555555544 67899998 567999999999999997
No 63
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.4e-30 Score=225.78 Aligned_cols=279 Identities=23% Similarity=0.404 Sum_probs=225.6
Q ss_pred EEEEECCC-CCEEEEE-------ECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC-CCEE
Q 008467 220 CACAWSPA-GSLLASG-------SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-GTLL 290 (564)
Q Consensus 220 ~~~~~sp~-~~~lasg-------s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g~~l 290 (564)
.++.|||- .++||.+ .+.|.+.|-++..+..+ ...... .-...+..++|++. .+.+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi----------~e~~s~-----d~~D~LfdV~Wse~~e~~~ 76 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGI----------QECQSY-----DTEDGLFDVAWSENHENQV 76 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCe----------EEEEee-----ecccceeEeeecCCCcceE
Confidence 46789993 3333332 24678888887533211 111111 12456889999985 4688
Q ss_pred EEEeCCCeEEEEECC--CceeEeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467 291 ATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 367 (564)
Q Consensus 291 ~sg~~dg~i~vw~~~--~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (564)
++++.||.+++||.. ...+..++.|...|.++.|++.. ..++++|.|++|++|+.....-+.+|..|...++...|.
T Consensus 77 ~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~s 156 (311)
T KOG0277|consen 77 IAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFS 156 (311)
T ss_pred EEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecC
Confidence 899999999999954 34566788999999999999865 558889999999999999888899999999999999886
Q ss_pred C--CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCe-eeeeccccccc
Q 008467 368 N--NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDK-YVHDLREHSKE 443 (564)
Q Consensus 368 ~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las~s~dg~i~iwd~~~~~-~~~~~~~~~~~ 443 (564)
+ ...|+++++|+++++||++.......+..|..+|.|+.|+. +..+|+||+.|+.||+||++.-+ ++..+.+|.-.
T Consensus 157 p~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A 236 (311)
T KOG0277|consen 157 PHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA 236 (311)
T ss_pred CCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceE
Confidence 5 46899999999999999987554445889999999999986 56789999999999999998754 57788999999
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEEeCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeC
Q 008467 444 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWSL 521 (564)
Q Consensus 444 i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~sp-dg~~lasgs~dg~i~iw~~ 521 (564)
|..++|+|... .+|||+|.|-++||||...+ .++.+...|+.-+..+.||+ ++.++|+++.|..++||+.
T Consensus 237 VRkvk~Sph~~--------~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 237 VRKVKFSPHHA--------SLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EEEEecCcchh--------hHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 99999999764 37999999999999998844 45566777888899999998 4689999999999999984
No 64
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=3.2e-31 Score=244.45 Aligned_cols=275 Identities=22% Similarity=0.355 Sum_probs=234.3
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc
Q 008467 273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE 349 (564)
Q Consensus 273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~ 349 (564)
.|...|..+.|-++...|++|+.|..|++|++.+. ...++.+-.++|+++.|.+++.++++++.|+.+++|++....
T Consensus 173 ~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r 252 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR 252 (459)
T ss_pred ccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh
Confidence 34567899999999899999999999999998764 455778888999999999999999999999999999999999
Q ss_pred eeEEEeecccCeEEEEcCCCc-eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeC
Q 008467 350 WKQQFEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM 428 (564)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~ 428 (564)
...++..|...+..+.+.-.. ..++++.|.+|..||+....+.+++.. .+.++.|..+ ...++||..|++||+||.
T Consensus 253 ~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~ 329 (459)
T KOG0288|consen 253 LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDI 329 (459)
T ss_pred hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccceEEEec
Confidence 999999999999999886544 489999999999999988766655431 2334555554 567889999999999999
Q ss_pred CCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC----CCCEEEEEEcCCC
Q 008467 429 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH----REPVYSLAFSPTG 504 (564)
Q Consensus 429 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h----~~~i~~~~~spdg 504 (564)
++..++..+..+. .|+++..++++. -|.+++.|.++.+.|+++......+... ....+.+.|||++
T Consensus 330 Rs~~~~~sv~~gg-~vtSl~ls~~g~---------~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~ 399 (459)
T KOG0288|consen 330 RSADKTRSVPLGG-RVTSLDLSMDGL---------ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDG 399 (459)
T ss_pred cCCceeeEeecCc-ceeeEeeccCCe---------EEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCC
Confidence 9999888877665 899999998875 4677899999999999988776665431 1237899999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEec---CCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467 505 EYLASGSLDKSMHIWSLKEGKIVKTYTG---NGGIFEVCWNKEGDKIAACFANHTVCVL 560 (564)
Q Consensus 505 ~~lasgs~dg~i~iw~~~~~~~~~~~~~---~~~i~~~~w~~~g~~la~~~~~~~v~v~ 560 (564)
.|+|+||.||.|+||++.+|++.+.... +.+|++++|+|.|..|+++..++.+++|
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 9999999999999999999999887754 3369999999999999999999999988
No 65
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=1.1e-29 Score=258.54 Aligned_cols=285 Identities=29% Similarity=0.472 Sum_probs=247.3
Q ss_pred EccC-CccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467 211 ILEG-HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 289 (564)
Q Consensus 211 ~l~~-h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 289 (564)
.+.+ |...+.+..|+ +.++.+|+.|+++++|+..++.. ......+|.+.|.++++..-+.+
T Consensus 202 ~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~----------------i~~~l~GH~g~V~~l~~~~~~~~ 263 (537)
T KOG0274|consen 202 VLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL----------------ILTRLVGHFGGVWGLAFPSGGDK 263 (537)
T ss_pred eecccCcchhhhheee--cCeEEecCCCceeEEeecccceE----------------EEeeccCCCCCceeEEEecCCCE
Confidence 3444 56677888888 67889999999999999876532 11123456788999999988899
Q ss_pred EEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC
Q 008467 290 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 368 (564)
Q Consensus 290 l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 368 (564)
+++|+.|.++++||.. |.....+.+|.+.|.++... ...+++||.|.+|++|++.++.++..+..|.++|.++...
T Consensus 264 lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~- 340 (537)
T KOG0274|consen 264 LVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD- 340 (537)
T ss_pred EEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-
Confidence 9999999999999964 77888999999999998755 4578889999999999999999999999899999999887
Q ss_pred CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-eeeeecccccccEEEE
Q 008467 369 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-KYVHDLREHSKEIYTI 447 (564)
Q Consensus 369 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~-~~~~~~~~~~~~i~~i 447 (564)
...+++++.|++|.+|+....+++..+.||.+.|.++.+.+. ..+++|+.|++|++||+.+. +++..+..|...+..+
T Consensus 341 ~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l 419 (537)
T KOG0274|consen 341 EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL 419 (537)
T ss_pred CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccc
Confidence 667888999999999999999999999999999999988765 88999999999999999999 9999999999888766
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 008467 448 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 526 (564)
Q Consensus 448 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~ 526 (564)
.+.. .+|++++.|++|++||...++++.++.+ |...|..+++. ...+++++.||++++||++++++
T Consensus 420 ~~~~-----------~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 420 LLRD-----------NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred cccc-----------ceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence 5533 2689999999999999999999999998 67889998886 56788899999999999999988
Q ss_pred EEEE
Q 008467 527 VKTY 530 (564)
Q Consensus 527 ~~~~ 530 (564)
...+
T Consensus 487 ~~~l 490 (537)
T KOG0274|consen 487 IRTL 490 (537)
T ss_pred hhhh
Confidence 7755
No 66
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=1.9e-29 Score=246.68 Aligned_cols=335 Identities=23% Similarity=0.413 Sum_probs=265.4
Q ss_pred eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467 210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 289 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 289 (564)
+++.||.+.|+++.|+|.+..|+|+|.|.++.||...+.. .+++..-..+...+.........|+|+++.
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~t----------GiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ 330 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENT----------GIWVDVVRLGEVGGSAGGFWGGLWSPNSNV 330 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCcc----------ceEEEEEEeecccccccceeeEEEcCCCCE
Confidence 4667999999999999999999999999999999865321 112222222333344556889999999999
Q ss_pred EEEEeCCCeEEEEECCC----ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC--cceeE--EEeecccCe
Q 008467 290 LATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT--EEWKQ--QFEFHSGPT 361 (564)
Q Consensus 290 l~sg~~dg~i~vw~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~--~~~~~--~~~~~~~~~ 361 (564)
+++-++.|-.++|.... .....+.+|.+.|..+.|+|.|.+|++.|.|.|-|++-... .++.. ..+.|.-..
T Consensus 331 ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl 410 (764)
T KOG1063|consen 331 IIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDL 410 (764)
T ss_pred EEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccc
Confidence 99999999999998333 23345789999999999999999999999999999996541 12222 234566677
Q ss_pred EEEEcCC-CceEEEEeCCCeEEEEEcCC--------------------------------Cce-----------------
Q 008467 362 LDVDWRN-NVSFATSSTDNMIYVCKIGE--------------------------------NRP----------------- 391 (564)
Q Consensus 362 ~~~~~~~-~~~~~~~~~d~~i~~~~~~~--------------------------------~~~----------------- 391 (564)
.++.+.+ +..|+++.....+++++... +++
T Consensus 411 ~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 411 TCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred eeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 7888877 88899988888888875311 000
Q ss_pred ---------------------------eeEecCCCcceEEEEECCCCCEEEEEeCCC-----cEEEEeCCCCeeeeeccc
Q 008467 392 ---------------------------IKTFAGHQGEVNCVKWDPTGSLLASCSDDV-----TAKIWNMKQDKYVHDLRE 439 (564)
Q Consensus 392 ---------------------------~~~~~~h~~~i~~v~~~~~~~~las~s~dg-----~i~iwd~~~~~~~~~~~~ 439 (564)
+..+.||..+|.|++.+|+++++||+.... .|++|+..+...+..+..
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~ 570 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG 570 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc
Confidence 122458889999999999999999998754 589999999988889999
Q ss_pred ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE----EEEEeCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 008467 440 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL----LYSLNGHREPVYSLAFSPTGEYLASGSLDKS 515 (564)
Q Consensus 440 ~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~h~~~i~~~~~spdg~~lasgs~dg~ 515 (564)
|+-.|+.++|+|++. +|++.|.|.++.+|....... ....+.|+.-|.+..|+|++.++||+|.|++
T Consensus 571 HsLTVT~l~FSpdg~---------~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~ 641 (764)
T KOG1063|consen 571 HSLTVTRLAFSPDGR---------YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKK 641 (764)
T ss_pred cceEEEEEEECCCCc---------EEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCce
Confidence 999999999999986 899999999999998754322 2236789999999999999999999999999
Q ss_pred EEEEeCCCC--eEEE---EEecCCCEEEEEEcc-----CCCEEEEEEcCCcEEEEEee
Q 008467 516 MHIWSLKEG--KIVK---TYTGNGGIFEVCWNK-----EGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 516 i~iw~~~~~--~~~~---~~~~~~~i~~~~w~~-----~g~~la~~~~~~~v~v~~~~ 563 (564)
|++|...+. +.+. ......+++.++|.| .+..+|+|...|.+.||.+.
T Consensus 642 VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 642 VKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred EEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 999999877 3322 233456788888877 34488999999999999865
No 67
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-29 Score=239.47 Aligned_cols=275 Identities=22% Similarity=0.397 Sum_probs=234.1
Q ss_pred CCCCeEEEEECCCCCE-EEEEeCCCeEEEEECCCc-eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCccee
Q 008467 274 KSKDVTTLDWNGEGTL-LATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 351 (564)
Q Consensus 274 ~~~~V~~l~~s~~g~~-l~sg~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 351 (564)
....|++++|||...+ +|+++ .-.+.||+..+. ....+...+..|+++.|..||..|++|...|.|+|+|..+...+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 3567999999995533 33333 347888886554 33456778889999999999999999999999999998887778
Q ss_pred EEEeecccCeEEEEc--CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCC-CEEEEEeCCCcEEEEeC
Q 008467 352 QQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNM 428 (564)
Q Consensus 352 ~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~las~s~dg~i~iwd~ 428 (564)
..+..|..++..+.| .++..|+++++|+.+.+|++.+...+..+.+|+..|.|.+|+|-. .+++|||.||+||+||+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 888899999877776 466788999999999999999888766899999999999999964 58999999999999999
Q ss_pred CCC-eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEEeCCCCCEEEEEEcCCCCE
Q 008467 429 KQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEY 506 (564)
Q Consensus 429 ~~~-~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~spdg~~ 506 (564)
+.. ..+.++ .|..+|-.+.+-|.|. ++++++. ..|+|||+-+| +.+..+..|...|+|+++..++..
T Consensus 184 R~~~~~v~el-nhg~pVe~vl~lpsgs---------~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~r 252 (487)
T KOG0310|consen 184 RSLTSRVVEL-NHGCPVESVLALPSGS---------LIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTR 252 (487)
T ss_pred ccCCceeEEe-cCCCceeeEEEcCCCC---------EEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCce
Confidence 877 555555 5899999999999876 6777764 58999999865 455556669999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467 507 LASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVL 560 (564)
Q Consensus 507 lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~ 560 (564)
|.+||-|+.|++|++.+.+++..+.-.++|.+++.+|+++.+++|..||.+.+-
T Consensus 253 LlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 253 LLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred EeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeee
Confidence 999999999999999999999999999999999999999999999999987654
No 68
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=6.5e-29 Score=273.03 Aligned_cols=240 Identities=21% Similarity=0.338 Sum_probs=199.9
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc---------eeEeecCCCCCEEEEEeCCC-CCEEEEeeCCCcEE
Q 008467 272 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---------LKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAI 341 (564)
Q Consensus 272 ~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~---------~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~ 341 (564)
..+...|++++|+|+|++|++|+.||.|+||+.... ....+ .+...|.+++|++. +.+|++++.|++|+
T Consensus 480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 346778999999999999999999999999996431 11122 23567899999874 68899999999999
Q ss_pred EEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEEEeCC
Q 008467 342 VWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDD 420 (564)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las~s~d 420 (564)
+||+.+++ .+..+.+|.+.|.+++|+| ++.+|+||+.|
T Consensus 559 lWd~~~~~-----------------------------------------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D 597 (793)
T PLN00181 559 VWDVARSQ-----------------------------------------LVTEMKEHEKRVWSIDYSSADPTLLASGSDD 597 (793)
T ss_pred EEECCCCe-----------------------------------------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCC
Confidence 99987643 2345678999999999997 78999999999
Q ss_pred CcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEEeCCCCCEEEEE
Q 008467 421 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLA 499 (564)
Q Consensus 421 g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~~~~ 499 (564)
++|++||++++..+..+..+ ..+.++.|.+... .+|++|+.||+|++||+++++ .+..+.+|...|.++.
T Consensus 598 g~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g--------~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~ 668 (793)
T PLN00181 598 GSVKLWSINQGVSIGTIKTK-ANICCVQFPSESG--------RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVR 668 (793)
T ss_pred CEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCC--------CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEE
Confidence 99999999998888877654 5789999965321 278999999999999998765 4677889999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCC------eEEEEEecCC-CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 500 FSPTGEYLASGSLDKSMHIWSLKEG------KIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 500 ~spdg~~lasgs~dg~i~iw~~~~~------~~~~~~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
|. ++.+|++++.|++|+|||+..+ +.+.++.++. .+..++|+++|.+||+|+.|+.|.||+..
T Consensus 669 f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 669 FV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred Ee-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 97 7889999999999999999743 5667777654 47889999999999999999999999853
No 69
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=4.7e-29 Score=253.91 Aligned_cols=275 Identities=17% Similarity=0.222 Sum_probs=205.5
Q ss_pred ccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCC-CCCCCceEEEEEeeccccccCCCCeEEEEECC-CCCEEEEE
Q 008467 216 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGG-AQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLATG 293 (564)
Q Consensus 216 ~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~l~sg 293 (564)
-..|.....++++..+++++.+..+..|+...+..... ...+... .......+|...|++++|+| ++++|++|
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~-----~~~~~l~GH~~~V~~v~fsP~d~~~LaSg 94 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLA-----SNPPILLGQEGPIIDVAFNPFDPQKLFTA 94 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCC-----CCCceEeCCCCCEEEEEEcCCCCCEEEEE
Confidence 34566677788888888999999999998654321100 0000000 00011235678899999999 88999999
Q ss_pred eCCCeEEEEECCC--------ceeEeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEE
Q 008467 294 SYDGQARIWSTNG--------DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 364 (564)
Q Consensus 294 ~~dg~i~vw~~~~--------~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 364 (564)
+.||.|++|+... .....+.+|...|.+++|+|++ ++|++|+.|++|+|||+.++..
T Consensus 95 S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~-------------- 160 (493)
T PTZ00421 95 SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA-------------- 160 (493)
T ss_pred eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE--------------
Confidence 9999999999753 2345788999999999999986 6899999999999999976532
Q ss_pred EcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccccccc-
Q 008467 365 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE- 443 (564)
Q Consensus 365 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~- 443 (564)
+..+.+|...|.+++|+|+|.+|++|+.|++|+|||+++++.+..+..|.+.
T Consensus 161 ---------------------------~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~ 213 (493)
T PTZ00421 161 ---------------------------VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK 213 (493)
T ss_pred ---------------------------EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCc
Confidence 2345678889999999999999999999999999999999998888888764
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEE---eCCCeEEEEeCCCCeE-EEEEeCC-CCCEEEEEEcCCCCEEEEEe-CCCcEE
Q 008467 444 IYTIRWSPTGSGTNNPNQQLILASA---SFDSTVKLWDVELGKL-LYSLNGH-REPVYSLAFSPTGEYLASGS-LDKSMH 517 (564)
Q Consensus 444 i~~i~~~p~~~~~~~~~~~~~l~s~---s~dg~i~iwd~~~~~~-~~~~~~h-~~~i~~~~~spdg~~lasgs-~dg~i~ 517 (564)
+..+.|.+.+. .++.+| +.|+.|++||+++... +.....+ ...+....|+|++++|++|+ .|+.|+
T Consensus 214 ~~~~~w~~~~~--------~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Ir 285 (493)
T PTZ00421 214 SQRCLWAKRKD--------LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIR 285 (493)
T ss_pred ceEEEEcCCCC--------eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEE
Confidence 34677877643 244433 3589999999987543 3333323 34566778999999999887 599999
Q ss_pred EEeCCCCeEEEEEec--CCCEEEEEEccC
Q 008467 518 IWSLKEGKIVKTYTG--NGGIFEVCWNKE 544 (564)
Q Consensus 518 iw~~~~~~~~~~~~~--~~~i~~~~w~~~ 544 (564)
+|++.+++++..+.. ...+..++|.|.
T Consensus 286 iwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 286 CFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 999999987766533 234566777664
No 70
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3e-30 Score=249.22 Aligned_cols=245 Identities=22% Similarity=0.379 Sum_probs=224.5
Q ss_pred EeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC-CceEEEEeCCCeEEEEEcCC
Q 008467 310 CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGE 388 (564)
Q Consensus 310 ~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~ 388 (564)
..+..+...|.++.|+|...+++++-..|.|.|||-++...++.|+....|+....+.. ..-++++++|..|++++..+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 34566889999999999999999999999999999999999999998888887777654 45678899999999999999
Q ss_pred CceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC-CeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEE
Q 008467 389 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ-DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS 467 (564)
Q Consensus 389 ~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~-~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s 467 (564)
...++.|..|...|.|++.+|.-.+++|+|+|.+|++||... ..+.++|.+|..-|++++|.|... ..+||
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~--------ntFaS 158 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP--------NTFAS 158 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc--------cceee
Confidence 999999999999999999999999999999999999999865 467789999999999999998754 36899
Q ss_pred EeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCeEEEEEecCC-CEEEEEEccC
Q 008467 468 ASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG--EYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKE 544 (564)
Q Consensus 468 ~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg--~~lasgs~dg~i~iw~~~~~~~~~~~~~~~-~i~~~~w~~~ 544 (564)
+|.|++|+||.+.+..+.+++.+|...|+++.|-+-| .||++|++|.+|+|||.++..+++++.++. .|..++|+|.
T Consensus 159 ~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~ 238 (794)
T KOG0276|consen 159 ASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPE 238 (794)
T ss_pred eeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCC
Confidence 9999999999999999999999999999999998754 799999999999999999999999999765 5899999999
Q ss_pred CCEEEEEEcCCcEEEEEe
Q 008467 545 GDKIAACFANHTVCVLDF 562 (564)
Q Consensus 545 g~~la~~~~~~~v~v~~~ 562 (564)
=..+++|+.||+|+||+-
T Consensus 239 lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 239 LPIIISGSEDGTVRIWNS 256 (794)
T ss_pred CcEEEEecCCccEEEecC
Confidence 999999999999999974
No 71
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-29 Score=247.20 Aligned_cols=272 Identities=25% Similarity=0.458 Sum_probs=233.5
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCCc-eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee-
Q 008467 279 TTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF- 356 (564)
Q Consensus 279 ~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~- 356 (564)
.-++|+. .+.|++|. ...|.+|+.... .......+...|+++.|+++|.+|+.|..+|.|.|||..+.+....+..
T Consensus 181 nlldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 181 NLLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred hHhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence 3568984 45666665 358999997544 3333444489999999999999999999999999999998888888888
Q ss_pred cccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeE-ecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeee
Q 008467 357 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 435 (564)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~-~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~ 435 (564)
|...+-++.|. ...+.+++.++.|..+++.....+.. +.+|..+|..++|++|+.++|+|+.|+.+.|||.....+..
T Consensus 259 h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~ 337 (484)
T KOG0305|consen 259 HASRVGSLAWN-SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF 337 (484)
T ss_pred cCceeEEEecc-CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE
Confidence 88899999998 66778899999999999987765544 88999999999999999999999999999999998888889
Q ss_pred ecccccccEEEEEEccCCCCCCCCCCcEEEEEE--eCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE--e
Q 008467 436 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASA--SFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG--S 511 (564)
Q Consensus 436 ~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasg--s 511 (564)
.+..|...|.+++|+|...+ +||+| +.|++|++||+.+|..+..+.. ...|.+|.|++..+-|+++ -
T Consensus 338 ~~~~H~aAVKA~awcP~q~~--------lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~ 408 (484)
T KOG0305|consen 338 TFTEHTAAVKALAWCPWQSG--------LLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGY 408 (484)
T ss_pred EEeccceeeeEeeeCCCccC--------ceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCC
Confidence 99999999999999997653 78886 4799999999999999888764 4679999999998766653 3
Q ss_pred CCCcEEEEeCCCCeEEEEEecCC-CEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 512 LDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 512 ~dg~i~iw~~~~~~~~~~~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
.++.|.||+..+.+++..+.++. .|..++|+|||..+++|.+|.++++|++
T Consensus 409 s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 409 SENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred CCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 56789999999988888887764 6999999999999999999999999986
No 72
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=6.1e-29 Score=253.11 Aligned_cols=244 Identities=20% Similarity=0.348 Sum_probs=197.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEECCCcee--------------EeecCCCCCEEEEEeCC-CCCEEEEeeCCCcEE
Q 008467 277 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK--------------CTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAI 341 (564)
Q Consensus 277 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~--------------~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~ 341 (564)
.|.....++++..+++++.+..+..|+..|... ..+.+|.++|++++|+| ++++|++|+.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 344555666767777888888888887544321 13678999999999999 788999999999999
Q ss_pred EEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCC-CEEEEEeCC
Q 008467 342 VWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDD 420 (564)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~las~s~d 420 (564)
+||+.++..... ...++..+.+|...|.+++|+|++ ++|++|+.|
T Consensus 102 IWdi~~~~~~~~----------------------------------~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D 147 (493)
T PTZ00421 102 GWGIPEEGLTQN----------------------------------ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD 147 (493)
T ss_pred EEecCCCccccc----------------------------------cCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC
Confidence 999876421100 123566788999999999999986 689999999
Q ss_pred CcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCC-EEEEE
Q 008467 421 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP-VYSLA 499 (564)
Q Consensus 421 g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~-i~~~~ 499 (564)
++|+|||+.++..+..+..|...|.+++|+|++. +|++++.|++|+|||+++++.+.++.+|... +..+.
T Consensus 148 gtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~---------lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~ 218 (493)
T PTZ00421 148 MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS---------LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCL 218 (493)
T ss_pred CEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC---------EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEE
Confidence 9999999999999889999999999999999875 7999999999999999999999999988765 45678
Q ss_pred EcCCCCEEEEEe----CCCcEEEEeCCCCe-EEEEEe--cCCCEEEEEEccCCCEEEEEE-cCCcEEEEEee
Q 008467 500 FSPTGEYLASGS----LDKSMHIWSLKEGK-IVKTYT--GNGGIFEVCWNKEGDKIAACF-ANHTVCVLDFR 563 (564)
Q Consensus 500 ~spdg~~lasgs----~dg~i~iw~~~~~~-~~~~~~--~~~~i~~~~w~~~g~~la~~~-~~~~v~v~~~~ 563 (564)
|+|++..|++++ .|+.|++||+++.. .+.... ....+....|+++++.|++|+ .|+.|++||++
T Consensus 219 w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 219 WAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELM 290 (493)
T ss_pred EcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEee
Confidence 999988887765 47899999998754 333332 234566778999999999886 59999999986
No 73
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.6e-30 Score=257.15 Aligned_cols=292 Identities=21% Similarity=0.378 Sum_probs=207.2
Q ss_pred CCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEE--ECCCCCEEE
Q 008467 214 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD--WNGEGTLLA 291 (564)
Q Consensus 214 ~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~--~s~~g~~l~ 291 (564)
+|.+.|.++.||+||+||||||.|+.||||.+.................. .. .......+++.-. -.......-
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~--~~--~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYF--EY--NANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhh--hh--hhccccCccccccccccccccccc
Confidence 89999999999999999999999999999998653221000000000000 00 0000000111000 000011111
Q ss_pred EEeCCCeEEE----EECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467 292 TGSYDGQARI----WSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 367 (564)
Q Consensus 292 sg~~dg~i~v----w~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (564)
.+.....+.+ .-...+..+.+.+|.+.|..|.|+.+ ++|+++|+|+|||+|++...+++..|
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F------------- 406 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF------------- 406 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE-------------
Confidence 2222222221 22334667789999999999999976 58999999999999999876655443
Q ss_pred CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEE
Q 008467 368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 446 (564)
Q Consensus 368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 446 (564)
.|...|+||+|+| |.+++++||-||.+|||++...+.+.- ..-..-|++
T Consensus 407 -----------------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITA 456 (712)
T KOG0283|consen 407 -----------------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITA 456 (712)
T ss_pred -----------------------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEee-hhhhhhhee
Confidence 3888999999999 678999999999999999987776543 334478999
Q ss_pred EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe--CC------CCCEEEEEEcCCC-CEEEEEeCCCcEE
Q 008467 447 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GH------REPVYSLAFSPTG-EYLASGSLDKSMH 517 (564)
Q Consensus 447 i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h------~~~i~~~~~spdg-~~lasgs~dg~i~ 517 (564)
++|.|+|. ..+.|+.+|.+++|+....+...... .| ...|+.+.|.|.. ..+.+.+.|..|+
T Consensus 457 vcy~PdGk---------~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIR 527 (712)
T KOG0283|consen 457 VCYSPDGK---------GAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIR 527 (712)
T ss_pred EEeccCCc---------eEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceE
Confidence 99999986 57789999999999998766654432 11 1279999999754 3466678899999
Q ss_pred EEeCCCCeEEEEEecC---CCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 518 IWSLKEGKIVKTYTGN---GGIFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 518 iw~~~~~~~~~~~~~~---~~i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
|||.++..++..|.+. ..-...+|+.||++|+.++.|..|.||+.
T Consensus 528 I~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 528 IYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred EEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 9999888888887753 23456789999999999999999999986
No 74
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2e-27 Score=202.56 Aligned_cols=296 Identities=26% Similarity=0.383 Sum_probs=234.6
Q ss_pred CccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceE-EEEEeeccccccCCCCeEEEEECCCCCEEEEE
Q 008467 215 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNV-LVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 293 (564)
Q Consensus 215 h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg 293 (564)
.+..|.+++|+|.|.+.|.|+...+.||-....-.........+... .++.+ +...|...|.|.+|||+|+++++|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~k---r~khhkgsiyc~~ws~~geliatg 107 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCK---RNKHHKGSIYCTAWSPCGELIATG 107 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEee---eccccCccEEEEEecCccCeEEec
Confidence 44679999999999999999999999998654321111111111111 11111 122346789999999999999999
Q ss_pred eCCCeEEEEECCCc------eeEeecCCCCCEEEEEeCCC----CCEEEEee-CCCcEEEEECCCcceeEEEeecccCeE
Q 008467 294 SYDGQARIWSTNGD------LKCTLSKHKGPIFSLKWNKK----GDYLLTGS-CDKTAIVWDVKTEEWKQQFEFHSGPTL 362 (564)
Q Consensus 294 ~~dg~i~vw~~~~~------~~~~~~~h~~~V~~l~~~~~----~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~ 362 (564)
+.|.+|++.-.+.. ....+.-|.+.|..++|-.+ +..|++++ .|..|.+-|..+++-.+.+..|.+.++
T Consensus 108 sndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghil 187 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHIL 187 (350)
T ss_pred CCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEE
Confidence 99999999865432 23467789999999999643 34555544 466777778889988888999999999
Q ss_pred EEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecC--C-----CcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeee
Q 008467 363 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG--H-----QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 435 (564)
Q Consensus 363 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--h-----~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~ 435 (564)
.+---++..|++++.|.+|++||++-+..+.++.. | .+.|.+++..|.|++|++|..|....+||++.+++++
T Consensus 188 alyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq 267 (350)
T KOG0641|consen 188 ALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQ 267 (350)
T ss_pred EEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceee
Confidence 88766778899999999999999998887776642 2 2468999999999999999999999999999999999
Q ss_pred ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC----eEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 008467 436 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG----KLLYSLNGHREPVYSLAFSPTGEYLASGS 511 (564)
Q Consensus 436 ~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~h~~~i~~~~~spdg~~lasgs 511 (564)
.+..|...|.+++|+|.. .+|++||.|..|++-|+.-. -.+.....|...+..+.|+|..--+++.+
T Consensus 268 ~f~phsadir~vrfsp~a---------~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisss 338 (350)
T KOG0641|consen 268 RFHPHSADIRCVRFSPGA---------HYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSS 338 (350)
T ss_pred eeCCCccceeEEEeCCCc---------eEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeecc
Confidence 999999999999999965 48999999999999998721 12344567888889999999998899999
Q ss_pred CCCcEEEEeCC
Q 008467 512 LDKSMHIWSLK 522 (564)
Q Consensus 512 ~dg~i~iw~~~ 522 (564)
.|.++.+|-+.
T Consensus 339 adkt~tlwa~~ 349 (350)
T KOG0641|consen 339 ADKTATLWALN 349 (350)
T ss_pred CcceEEEeccC
Confidence 99999999764
No 75
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=8.2e-30 Score=220.33 Aligned_cols=282 Identities=25% Similarity=0.408 Sum_probs=237.0
Q ss_pred eEccCCccceEEEEECC---CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC
Q 008467 210 TILEGHTSEVCACAWSP---AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 286 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp---~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 286 (564)
.+..||+.+|-.++||| +|-+|.+++.||.-.+=+=.+|..+ +...+|...|.+...+.+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi-----------------gtfeghkgavw~~~l~~n 70 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI-----------------GTFEGHKGAVWSATLNKN 70 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcE-----------------EeeeccCcceeeeecCch
Confidence 35689999999999997 6789999999998766544443321 122345678999999999
Q ss_pred CCEEEEEeCCCeEEEEEC-CCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEE
Q 008467 287 GTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 365 (564)
Q Consensus 287 g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (564)
....|+++.|-+.+|||. .|..+..+ .|+--|.+++|+.+.++|++|+.++.+||+|++..
T Consensus 71 a~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p----------------- 132 (334)
T KOG0278|consen 71 ATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP----------------- 132 (334)
T ss_pred hhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCC-----------------
Confidence 999999999999999994 56665555 48889999999999999999999999999998653
Q ss_pred cCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEE
Q 008467 366 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 445 (564)
Q Consensus 366 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~ 445 (564)
..|...+.+|.+.|..+-|....+.|+|.++|++||+||.+++..++++.. ..+|.
T Consensus 133 -----------------------~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~Vt 188 (334)
T KOG0278|consen 133 -----------------------KAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVT 188 (334)
T ss_pred -----------------------CCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCc
Confidence 235567889999999999999889999999999999999999999988764 45789
Q ss_pred EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467 446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 525 (564)
Q Consensus 446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~ 525 (564)
++..+++|. +++-..-+.|++||..+-.++...+- ...|.+.+++|+..++++|+.|+.++.||..+|.
T Consensus 189 SlEvs~dG~----------ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge 257 (334)
T KOG0278|consen 189 SLEVSQDGR----------ILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE 257 (334)
T ss_pred ceeeccCCC----------EEEEecCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCc
Confidence 999999885 44556678999999998887776652 3468999999999999999999999999999998
Q ss_pred EEEEE-ec-CCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 526 IVKTY-TG-NGGIFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 526 ~~~~~-~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
-+..+ .+ .++|.++.|+|||...|+|+.||+|++|-
T Consensus 258 Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 258 EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred eeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 88776 43 56799999999999999999999999995
No 76
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=5.1e-29 Score=217.56 Aligned_cols=286 Identities=20% Similarity=0.338 Sum_probs=226.4
Q ss_pred eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467 210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 289 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 289 (564)
..|.||..+++.+.++.+|.+|+|++.|.++.+|--.+|.. .+.+.+|...|.|++.+-+.+.
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer-----------------lGty~GHtGavW~~Did~~s~~ 66 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER-----------------LGTYDGHTGAVWCCDIDWDSKH 66 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce-----------------eeeecCCCceEEEEEecCCcce
Confidence 46789999999999999999999999999999997655542 1334567889999999999999
Q ss_pred EEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCC-----CcEEEEECC-------CcceeEEEee
Q 008467 290 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-----KTAIVWDVK-------TEEWKQQFEF 356 (564)
Q Consensus 290 l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-----~~v~iwd~~-------~~~~~~~~~~ 356 (564)
+++|+.|.++++||+. |+.+..+ ....+|..+.|+++|++++.+..+ +.|.++|++ ..+....+..
T Consensus 67 liTGSAD~t~kLWDv~tGk~la~~-k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t 145 (327)
T KOG0643|consen 67 LITGSADQTAKLWDVETGKQLATW-KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT 145 (327)
T ss_pred eeeccccceeEEEEcCCCcEEEEe-ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC
Confidence 9999999999999976 5555444 467899999999999988776543 578999987 3344455556
Q ss_pred cccCeEEEEcCC-CceEEEEeCCCeEEEEEcCCCc-eeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee
Q 008467 357 HSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENR-PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 434 (564)
Q Consensus 357 ~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~-~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~ 434 (564)
+...+..+-|.. +..++++..||.|..|+..++. .+..-.-|...|+.++++||..+++|+|.|.+.++||+.+-..+
T Consensus 146 ~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~ 225 (327)
T KOG0643|consen 146 PDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVL 225 (327)
T ss_pred CccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeE
Confidence 666777778865 4567889999999999999874 45555779999999999999999999999999999999998888
Q ss_pred eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC-eEEEEeCCCC------------eEEEEEeCCCCCEEEEEEc
Q 008467 435 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS-TVKLWDVELG------------KLLYSLNGHREPVYSLAFS 501 (564)
Q Consensus 435 ~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg-~i~iwd~~~~------------~~~~~~~~h~~~i~~~~~s 501 (564)
.++.. ..++.+.+++|... .+++.|+.+- .|.-=+.+.| +.+..+++|-+||++++|+
T Consensus 226 Kty~t-e~PvN~aaisP~~d--------~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh 296 (327)
T KOG0643|consen 226 KTYTT-ERPVNTAAISPLLD--------HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH 296 (327)
T ss_pred EEeee-cccccceecccccc--------eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC
Confidence 77653 46788888888643 3444444331 1211122222 3455678999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCC
Q 008467 502 PTGEYLASGSLDKSMHIWSLK 522 (564)
Q Consensus 502 pdg~~lasgs~dg~i~iw~~~ 522 (564)
|+|+..++|+.||.|++....
T Consensus 297 PdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 297 PDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred CCCcccccCCCCceEEEEEec
Confidence 999999999999999987654
No 77
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.7e-27 Score=212.47 Aligned_cols=277 Identities=21% Similarity=0.331 Sum_probs=219.5
Q ss_pred cCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEE
Q 008467 213 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT 292 (564)
Q Consensus 213 ~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~s 292 (564)
..-.+.|+++.|+++|.+|++++.|.+++|||..+++.... . ..+...|..++|-...+.++.
T Consensus 11 ~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t-------------i----~skkyG~~~~~Fth~~~~~i~ 73 (311)
T KOG1446|consen 11 RETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT-------------I----NSKKYGVDLACFTHHSNTVIH 73 (311)
T ss_pred ccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE-------------e----ecccccccEEEEecCCceEEE
Confidence 33457899999999999999999999999999987753211 1 112345777788777666666
Q ss_pred EeC--CCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCC
Q 008467 293 GSY--DGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN 369 (564)
Q Consensus 293 g~~--dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (564)
++. |.+||.-++. .+.+..|.+|...|.+|+.+|-+..++++|.|++|++||++..++...+..
T Consensus 74 sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~------------- 140 (311)
T KOG1446|consen 74 SSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL------------- 140 (311)
T ss_pred ccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec-------------
Confidence 666 8899999875 567778999999999999999999999999999999999987654432211
Q ss_pred ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC--eeeeecc---cccccE
Q 008467 370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD--KYVHDLR---EHSKEI 444 (564)
Q Consensus 370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~--~~~~~~~---~~~~~i 444 (564)
..-..++|+|.|-++|++.....|++||++.- .+..++. ....+.
T Consensus 141 ------------------------------~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew 190 (311)
T KOG1446|consen 141 ------------------------------SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEW 190 (311)
T ss_pred ------------------------------CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccce
Confidence 11224789999999999998889999999753 3334443 335678
Q ss_pred EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCE---EEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467 445 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPV---YSLAFSPTGEYLASGSLDKSMHIWSL 521 (564)
Q Consensus 445 ~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i---~~~~~spdg~~lasgs~dg~i~iw~~ 521 (564)
..+.|+|+|. +|+.+...+.+++.|.-+|..+.++..+...- ...+|+|||+++.+|+.||+|++|++
T Consensus 191 ~~l~FS~dGK---------~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 191 TDLEFSPDGK---------SILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred eeeEEcCCCC---------EEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEc
Confidence 8999999996 45566778999999999999988887765432 57889999999999999999999999
Q ss_pred CCCeEEEEEecC--CCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467 522 KEGKIVKTYTGN--GGIFEVCWNKEGDKIAACFANHTVCVL 560 (564)
Q Consensus 522 ~~~~~~~~~~~~--~~i~~~~w~~~g~~la~~~~~~~v~v~ 560 (564)
++|+.+..+.+. +.+..+.|+|.--.+|+++. .+.+|
T Consensus 262 ~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw 300 (311)
T KOG1446|consen 262 ETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--NLVFW 300 (311)
T ss_pred CCCcEeeEecCCCCCCccccccCCceeeeeecCc--eEEEE
Confidence 999999999873 45778889999888887754 45555
No 78
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.9e-27 Score=201.54 Aligned_cols=278 Identities=24% Similarity=0.461 Sum_probs=228.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCC---------------c-eeEeecCCCCCEEEEEeCCCCCEEEEeeCCC
Q 008467 275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNG---------------D-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK 338 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~---------------~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~ 338 (564)
+..|.+++|+|.|.+.++|+...+.||..... . +...-..|++.|+|.+|+|.|..|++|+.|+
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 46799999999999999999999999874211 1 1123456899999999999999999999999
Q ss_pred cEEEEECCCccee-----EEEeecccCeEEEEcCCC-----ceEEEE-eCCCeEEEEEcCCCceeeEecCCCcceEEEEE
Q 008467 339 TAIVWDVKTEEWK-----QQFEFHSGPTLDVDWRNN-----VSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKW 407 (564)
Q Consensus 339 ~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~-----~~~~~~-~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~ 407 (564)
+|++.-.+...+. -.|..|.+.+.++.|.++ ..++++ ..|-.|++-|.+.+.+...+.||++.|.++ +
T Consensus 112 ~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-y 190 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-Y 190 (350)
T ss_pred eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-E
Confidence 9998865543322 257789999999988644 234443 467789999999999999999999999877 3
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCeeeeeccc--c-----cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC
Q 008467 408 DPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE--H-----SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 480 (564)
Q Consensus 408 ~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~--~-----~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 480 (564)
+-++-++++||.|.+||+||++-..++.++.. | ...|.+++..|.|. +|++|-.|....+||++
T Consensus 191 swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr---------ll~sg~~dssc~lydir 261 (350)
T KOG0641|consen 191 SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR---------LLASGHADSSCMLYDIR 261 (350)
T ss_pred EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc---------eeeeccCCCceEEEEee
Confidence 45688999999999999999998888776532 2 25688899999886 89999999999999999
Q ss_pred CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---e--EEEEEecCCCEEEEEEccCCCEEEEEEcCC
Q 008467 481 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG---K--IVKTYTGNGGIFEVCWNKEGDKIAACFANH 555 (564)
Q Consensus 481 ~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~---~--~~~~~~~~~~i~~~~w~~~g~~la~~~~~~ 555 (564)
-++.+..+-.|...|.++.|||...||.+|+.|..|++-|++.- + .+..-+....+..+.|+|..-.+...+.|.
T Consensus 262 g~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadk 341 (350)
T KOG0641|consen 262 GGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK 341 (350)
T ss_pred CCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcc
Confidence 99999999999999999999999999999999999999998632 1 122223445677889999998888888999
Q ss_pred cEEEEEe
Q 008467 556 TVCVLDF 562 (564)
Q Consensus 556 ~v~v~~~ 562 (564)
++.+|-+
T Consensus 342 t~tlwa~ 348 (350)
T KOG0641|consen 342 TATLWAL 348 (350)
T ss_pred eEEEecc
Confidence 9999854
No 79
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.2e-28 Score=219.42 Aligned_cols=305 Identities=23% Similarity=0.373 Sum_probs=232.6
Q ss_pred CceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCC---------CCCCCCCCceEEEEEeeccccccCCCC
Q 008467 207 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTS---------NGGAQNGPLNVLVLKHVKGRTNEKSKD 277 (564)
Q Consensus 207 ~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (564)
-....+..|+.++.+.+|||||.++||||.|..|+|.|++.... ....+.+| +++. .-.|..+
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hP----vIRT----lYDH~de 174 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHP----VIRT----LYDHVDE 174 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCc----eEee----hhhccCc
Confidence 34567889999999999999999999999999999999873210 01111111 1222 2245678
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCce-eEe--ecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467 278 VTTLDWNGEGTLLATGSYDGQARIWSTNGDL-KCT--LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 354 (564)
Q Consensus 278 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~-~~~--~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 354 (564)
|+++.|+|....|++|+.|++|+++|..... +.. .-.-..+|.++.|+|.|.+|+.|..-.++++||+++-++.-.-
T Consensus 175 vn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa 254 (430)
T KOG0640|consen 175 VNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA 254 (430)
T ss_pred ccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec
Confidence 9999999999999999999999999976421 111 1224568999999999999999999999999999987654332
Q ss_pred ---eecccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEec-CCCc-ceEEEEECCCCCEEEEEeCCCcEEEEeC
Q 008467 355 ---EFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFA-GHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNM 428 (564)
Q Consensus 355 ---~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~-~i~~v~~~~~~~~las~s~dg~i~iwd~ 428 (564)
..|.+.+.++.+... ..+++++.||.|++||--.++++.++. .|.+ .|.++.|..+|+++.+.+.|..+++|.+
T Consensus 255 nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi 334 (430)
T KOG0640|consen 255 NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEI 334 (430)
T ss_pred CcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeee
Confidence 356778888988654 567999999999999988888888875 4654 6999999999999999999999999999
Q ss_pred CCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE-eCCCCCEEEEEEcCCCCEE
Q 008467 429 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGEYL 507 (564)
Q Consensus 429 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~~~~~spdg~~l 507 (564)
.+++++....+....-. ..+ .....++....++|.---..+.+.-||.+++..+..+ .+|.+++..+.-||.+..+
T Consensus 335 ~t~R~l~~YtGAg~tgr-q~~--rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~F 411 (430)
T KOG0640|consen 335 STGRMLKEYTGAGTTGR-QKH--RTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAF 411 (430)
T ss_pred cCCceEEEEecCCcccc-hhh--hhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCce
Confidence 99999887765421100 000 0112223334445544445578999999987654433 4799999999999999999
Q ss_pred EEEeCCCcEEEEeCC
Q 008467 508 ASGSLDKSMHIWSLK 522 (564)
Q Consensus 508 asgs~dg~i~iw~~~ 522 (564)
.+||.|-++++|-.+
T Consensus 412 mTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 412 MTCSDDFRARFWYRR 426 (430)
T ss_pred eeecccceeeeeeec
Confidence 999999999999654
No 80
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=5.6e-28 Score=214.71 Aligned_cols=268 Identities=21% Similarity=0.353 Sum_probs=207.1
Q ss_pred CccceEEEEECCC-CCEEEEEECCCcEEEEeCCCC-CCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEE
Q 008467 215 HTSEVCACAWSPA-GSLLASGSGDSTARIWTIADG-TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT 292 (564)
Q Consensus 215 h~~~V~~~~~sp~-~~~lasgs~D~~i~iW~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~s 292 (564)
-.+.|.+++|||. ..+|+.||.|++||+|+++.. ...++ ....+.++|.+++|+.||..+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k----------------a~~~~~~PvL~v~WsddgskVf~ 89 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK----------------AQQSHDGPVLDVCWSDDGSKVFS 89 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccch----------------hhhccCCCeEEEEEccCCceEEe
Confidence 3477999999994 667779999999999999763 22111 11245789999999999999999
Q ss_pred EeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCC--EEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCc
Q 008467 293 GSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD--YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 370 (564)
Q Consensus 293 g~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (564)
|+.|+.+++||+.......+..|.++|.+++|-+... .|+|||+|++++.||.+....+.++...
T Consensus 90 g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP------------- 156 (347)
T KOG0647|consen 90 GGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP------------- 156 (347)
T ss_pred eccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-------------
Confidence 9999999999998888888999999999999988766 7999999999999999865544333221
Q ss_pred eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc----cccEEE
Q 008467 371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH----SKEIYT 446 (564)
Q Consensus 371 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~----~~~i~~ 446 (564)
..+.++.. -..+++.+..+..|.+|++..+.. .++.+ .-.+.+
T Consensus 157 -----------------------------eRvYa~Dv--~~pm~vVata~r~i~vynL~n~~t--e~k~~~SpLk~Q~R~ 203 (347)
T KOG0647|consen 157 -----------------------------ERVYAADV--LYPMAVVATAERHIAVYNLENPPT--EFKRIESPLKWQTRC 203 (347)
T ss_pred -----------------------------ceeeehhc--cCceeEEEecCCcEEEEEcCCCcc--hhhhhcCcccceeeE
Confidence 11222221 235677788889999999865432 22222 234677
Q ss_pred EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--eEEEEEeCCCC---------CEEEEEEcCCCCEEEEEeCCCc
Q 008467 447 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--KLLYSLNGHRE---------PVYSLAFSPTGEYLASGSLDKS 515 (564)
Q Consensus 447 i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~h~~---------~i~~~~~spdg~~lasgs~dg~ 515 (564)
|+..++.. ..+.|+..|.+-|..+..+ +.-++++.|+. +|++|+|+|.-..|+|+|.||+
T Consensus 204 va~f~d~~---------~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt 274 (347)
T KOG0647|consen 204 VACFQDKD---------GFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT 274 (347)
T ss_pred EEEEecCC---------ceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce
Confidence 77766654 2477999999999998876 55567777763 4788999999999999999999
Q ss_pred EEEEeCCCCeEEEEEec-CCCEEEEEEccCCCEEEEEEc
Q 008467 516 MHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFA 553 (564)
Q Consensus 516 i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~g~~la~~~~ 553 (564)
+.+||-.....+++++. ..+|...+|+.+|+++|.+.+
T Consensus 275 f~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 275 FSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred EEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence 99999987777777654 567999999999999997743
No 81
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=9.2e-30 Score=231.13 Aligned_cols=276 Identities=22% Similarity=0.362 Sum_probs=224.1
Q ss_pred cccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc
Q 008467 271 TNEKSKDVTTLDWNGEG-TLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 348 (564)
Q Consensus 271 ~~~~~~~V~~l~~s~~g-~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~ 348 (564)
..+|...|.|++=+|.- ..+++|+.||.|+|||+.. .+..++..|.+.|.+|++.. ..+++++.|++|+.|-+...
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~ 139 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP 139 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC
Confidence 34566789999999976 7899999999999999865 45678999999999999987 67999999999999986542
Q ss_pred ceeEEEeecccCeEEEEcC-CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC-EEEEEeCCCcEEEE
Q 008467 349 EWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIW 426 (564)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~las~s~dg~i~iw 426 (564)
...++.+ ...+++++-. .+..|++|+. .|.+||..-..|+..+.-....|.++.|+|... +|++|..|+.|.||
T Consensus 140 -p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLy 215 (433)
T KOG0268|consen 140 -PLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLY 215 (433)
T ss_pred -cceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEE
Confidence 3333322 2233444432 3456777764 477899998999999988888999999999764 57888899999999
Q ss_pred eCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEEeCCCCCEEEEEEcCCCC
Q 008467 427 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGE 505 (564)
Q Consensus 427 d~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~spdg~ 505 (564)
|+++..+++.+..- -.-..|+|+|.+ ..+++|+.|..++.+|++.- ..+....+|...|.++.|||.|+
T Consensus 216 D~R~~~Pl~KVi~~-mRTN~IswnPea---------fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~ 285 (433)
T KOG0268|consen 216 DLRQASPLKKVILT-MRTNTICWNPEA---------FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQ 285 (433)
T ss_pred ecccCCccceeeee-ccccceecCccc---------cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcc
Confidence 99999887655422 233679999944 25889999999999999864 45677889999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEec--CCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 506 YLASGSLDKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 506 ~lasgs~dg~i~iw~~~~~~~~~~~~~--~~~i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
-+++||.|.+|+||.++.+.--..|-. ...|+++.||.|.+++.+|+.++.|++|-.
T Consensus 286 EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 286 EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 999999999999999998875555432 346899999999999999999999999964
No 82
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=9.7e-27 Score=232.32 Aligned_cols=328 Identities=20% Similarity=0.303 Sum_probs=250.0
Q ss_pred CceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC
Q 008467 207 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 286 (564)
Q Consensus 207 ~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 286 (564)
..+.++.++.+.|++|.=+|--..+|.|-.+|+|.|+++..++.. ..+++- .+.|++++|..|
T Consensus 193 K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil----------~sFk~d-------~g~VtslSFrtD 255 (910)
T KOG1539|consen 193 KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL----------MSFKQD-------WGRVTSLSFRTD 255 (910)
T ss_pred cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE----------EEEEcc-------ccceeEEEeccC
Confidence 345678899999999999999999999999999999999765421 122221 267999999999
Q ss_pred CC-EEEEEeCCCeEEEEECCCceeE--eecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc----eeEEEeeccc
Q 008467 287 GT-LLATGSYDGQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE----WKQQFEFHSG 359 (564)
Q Consensus 287 g~-~l~sg~~dg~i~vw~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~----~~~~~~~~~~ 359 (564)
|+ .+++|+..|.+.+||.+++.+. ....|.+.|..+.|.|....+++++.|+++++|=..++. ..+.-..|..
T Consensus 256 G~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~ 335 (910)
T KOG1539|consen 256 GNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSA 335 (910)
T ss_pred CCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCC
Confidence 97 5667777899999999876443 345799999999999999999999999999998444322 1112122333
Q ss_pred CeEEEEcCC-------------------------------------------------------------------CceE
Q 008467 360 PTLDVDWRN-------------------------------------------------------------------NVSF 372 (564)
Q Consensus 360 ~~~~~~~~~-------------------------------------------------------------------~~~~ 372 (564)
|..++.+.. +..+
T Consensus 336 Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~ 415 (910)
T KOG1539|consen 336 PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVI 415 (910)
T ss_pred CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhccee
Confidence 333332211 1122
Q ss_pred EEEeCCCeEEEEEcCCCce-eeEe-----cCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeec---cccccc
Q 008467 373 ATSSTDNMIYVCKIGENRP-IKTF-----AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL---REHSKE 443 (564)
Q Consensus 373 ~~~~~d~~i~~~~~~~~~~-~~~~-----~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~---~~~~~~ 443 (564)
+..-++...+.|+.++... ..++ ......+++++.++-|++.+.|+..|+|-+|++.++.....+ ..|.++
T Consensus 416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~ 495 (910)
T KOG1539|consen 416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGE 495 (910)
T ss_pred EEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCc
Confidence 3333445566666655432 1111 112356889999999999999999999999999999888888 589999
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE-------------------------------------
Q 008467 444 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY------------------------------------- 486 (564)
Q Consensus 444 i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~------------------------------------- 486 (564)
|+.++....+. .+++++.+|.+++||......+.
T Consensus 496 V~gla~D~~n~---------~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~ 566 (910)
T KOG1539|consen 496 VTGLAVDGTNR---------LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR 566 (910)
T ss_pred eeEEEecCCCc---------eEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhh
Confidence 99998765443 68889999999999876543221
Q ss_pred ----EEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcC-CcEEEE
Q 008467 487 ----SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN-HTVCVL 560 (564)
Q Consensus 487 ----~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~-~~v~v~ 560 (564)
.+.+|...|++++|||||+||++++.|++|++||+.++.++..+.-...+..++++|.|++||+...| ..|++|
T Consensus 567 kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 567 KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 23379999999999999999999999999999999999999998888889999999999999999887 456776
No 83
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.3e-29 Score=219.03 Aligned_cols=247 Identities=25% Similarity=0.420 Sum_probs=207.9
Q ss_pred eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
+-++.||++.|..+..+.+-...|+++.|=+.+|||--+|.... .-.|..-|.+++|+.|.+
T Consensus 52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelh------------------sf~hkhivk~~af~~ds~ 113 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELH------------------SFEHKHIVKAVAFSQDSN 113 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhh------------------hhhhhheeeeEEecccch
Confidence 45788999999999999999999999999999999977664321 112334589999999999
Q ss_pred EEEEEeCCCeEEEEECCC--ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc
Q 008467 289 LLATGSYDGQARIWSTNG--DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 366 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 366 (564)
+|++|+.+..+||++.+. -....+.+|++.|..+-|....+.|++.+.|++||+||.+++..++.+.+
T Consensus 114 ~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~---------- 183 (334)
T KOG0278|consen 114 YLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF---------- 183 (334)
T ss_pred hhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec----------
Confidence 999999999999999864 34567899999999999999999999999999999999999987765543
Q ss_pred CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEE
Q 008467 367 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 446 (564)
Q Consensus 367 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 446 (564)
...|+++.++++|.+| +-..-+.|++||.++-..+..+... ..|.+
T Consensus 184 --------------------------------~s~VtSlEvs~dG~il-Tia~gssV~Fwdaksf~~lKs~k~P-~nV~S 229 (334)
T KOG0278|consen 184 --------------------------------NSPVTSLEVSQDGRIL-TIAYGSSVKFWDAKSFGLLKSYKMP-CNVES 229 (334)
T ss_pred --------------------------------CCCCcceeeccCCCEE-EEecCceeEEeccccccceeeccCc-ccccc
Confidence 3467889999999986 4456678999999998888776543 34666
Q ss_pred EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE-eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467 447 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 525 (564)
Q Consensus 447 i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~ 525 (564)
...+|.. .+++.|+.|..++.||..+|..+..+ ++|.+||.|+.|||||...|+||.||+|++|.+..++
T Consensus 230 ASL~P~k---------~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 230 ASLHPKK---------EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ccccCCC---------ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 6666653 26888999999999999999998885 8999999999999999999999999999999987665
Q ss_pred E
Q 008467 526 I 526 (564)
Q Consensus 526 ~ 526 (564)
.
T Consensus 301 ~ 301 (334)
T KOG0278|consen 301 T 301 (334)
T ss_pred c
Confidence 3
No 84
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.3e-28 Score=235.40 Aligned_cols=276 Identities=26% Similarity=0.489 Sum_probs=229.5
Q ss_pred EEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 008467 220 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA 299 (564)
Q Consensus 220 ~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i 299 (564)
+-+.|+ ..+.||.|. ...+++|+-.++.. ..+... ....|+++.|+++|.+|++|..+|.|
T Consensus 181 nlldWs-s~n~laVal-g~~vylW~~~s~~v-----------~~l~~~------~~~~vtSv~ws~~G~~LavG~~~g~v 241 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVAL-GQSVYLWSASSGSV-----------TELCSF------GEELVTSVKWSPDGSHLAVGTSDGTV 241 (484)
T ss_pred hHhhcc-cCCeEEEEe-cceEEEEecCCCce-----------EEeEec------CCCceEEEEECCCCCEEEEeecCCeE
Confidence 346788 555666654 56799999766531 111111 14679999999999999999999999
Q ss_pred EEEECCC-ceeEeecC-CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE-EeecccCeEEEEcCC-CceEEEE
Q 008467 300 RIWSTNG-DLKCTLSK-HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-FEFHSGPTLDVDWRN-NVSFATS 375 (564)
Q Consensus 300 ~vw~~~~-~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~ 375 (564)
.|||... .....+.+ |..-|-+++|+ +..+.+|+.|+.|..+|++..+.... +..|...+..+.|.. ...++++
T Consensus 242 ~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASG 319 (484)
T KOG0305|consen 242 QIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASG 319 (484)
T ss_pred EEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccC
Confidence 9999653 34455666 99999999999 66899999999999999987765444 778889999999965 5678999
Q ss_pred eCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC-CCEEEEEe--CCCcEEEEeCCCCeeeeecccccccEEEEEEccC
Q 008467 376 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCS--DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 452 (564)
Q Consensus 376 ~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~-~~~las~s--~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~ 452 (564)
+.|+.+++|+.....|...+..|.+.|.+++|+|- ..+||+|+ .|+.|++||..++..+..+. -...|.++.|++.
T Consensus 320 gnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~ 398 (484)
T KOG0305|consen 320 GNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKK 398 (484)
T ss_pred CCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCC
Confidence 99999999999888999999999999999999994 57888865 59999999999999887765 3567999999997
Q ss_pred CCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 008467 453 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 524 (564)
Q Consensus 453 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~ 524 (564)
.. +++...|..++.|.||+..+.+.+..+.+|...|..+++||||..+++|+.|.++++|++-+.
T Consensus 399 ~k-------Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 399 YK-------ELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CC-------EEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 64 334445667889999999999999999999999999999999999999999999999998653
No 85
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=1.2e-27 Score=222.11 Aligned_cols=281 Identities=22% Similarity=0.326 Sum_probs=230.3
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467 217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 296 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 296 (564)
..+.++...|....++||+.|..+.++|....+.. .. ..+|.+.|+.+.++++...+++++.|
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l-------------~~----~~Gh~kki~~v~~~~~~~~v~~aSad 282 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL-------------AT----LKGHTKKITSVKFHKDLDTVITASAD 282 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhh-------------hh----ccCcceEEEEEEeccchhheeecCCc
Confidence 56777777887789999999999999997654321 11 23456789999999999999999999
Q ss_pred CeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEE
Q 008467 297 GQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS 375 (564)
Q Consensus 297 g~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (564)
-.|+||... .........|..+|+.+..+|.|.||++++.|+++.+.|++++........
T Consensus 283 ~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~------------------- 343 (506)
T KOG0289|consen 283 EIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD------------------- 343 (506)
T ss_pred ceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee-------------------
Confidence 999999865 345556788999999999999999999999999999999988764432111
Q ss_pred eCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCC
Q 008467 376 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSG 455 (564)
Q Consensus 376 ~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~ 455 (564)
.+..-.+++++|+|||-+|++|+.||.++|||++++..+..|.+|.++|.+|+|+.+|
T Consensus 344 --------------------~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG-- 401 (506)
T KOG0289|consen 344 --------------------ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG-- 401 (506)
T ss_pred --------------------ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCc--
Confidence 0112257899999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCeEEEEEec
Q 008467 456 TNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-REPVYSLAFSPTGEYLASGSLDKSMHIWSLK--EGKIVKTYTG 532 (564)
Q Consensus 456 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~i~~~~~spdg~~lasgs~dg~i~iw~~~--~~~~~~~~~~ 532 (564)
++|++++.|+.|++||++..+...++... ..+|.++.|.+.|++|+.+|.|=+|++++-. .+..+..+..
T Consensus 402 -------Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~ 474 (506)
T KOG0289|consen 402 -------YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELAD 474 (506)
T ss_pred -------eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhh
Confidence 48999999999999999988776666432 2479999999999999999888666666633 4455655555
Q ss_pred CC-CEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 533 NG-GIFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 533 ~~-~i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
+. ..+.+.|....++++.|+.|..+.|+-+
T Consensus 475 ~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 475 HSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cccccceeeecccceEEeeccchhheEEeec
Confidence 44 4678889999999999999998888754
No 86
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=6.8e-28 Score=236.04 Aligned_cols=278 Identities=22% Similarity=0.383 Sum_probs=226.1
Q ss_pred eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEE-EEECC-CC
Q 008467 210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT-LDWNG-EG 287 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-l~~s~-~g 287 (564)
..+.||...|..|++.+. ..++++|.||++++|+-......+. ..+. .+..-|.+ +++-+ ++
T Consensus 8 ~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~--------~~~~-------~~~g~i~~~i~y~e~~~ 71 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLET--------HAFE-------GPKGFIANSICYAESDK 71 (745)
T ss_pred EEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccc--------eecc-------cCcceeeccceeccccC
Confidence 578999999999987755 4788999999999998543321110 0000 11122333 55553 55
Q ss_pred CEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc
Q 008467 288 TLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 366 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 366 (564)
-.+++|+.|+.+.+|...+ ....++.+|...|.++.-..++. ++|||+|.++++|- .+++...+..|..++..+..
T Consensus 72 ~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~ 148 (745)
T KOG0301|consen 72 GRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR--IGELVYSLQGHTASVWAVAS 148 (745)
T ss_pred cceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEec--chhhhcccCCcchheeeeee
Confidence 6799999999999999764 56778999999999999877777 99999999999994 45666678999999999888
Q ss_pred CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEE
Q 008467 367 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 446 (564)
Q Consensus 367 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 446 (564)
.+...|++++.|.+|++|.- ++.+++|.||++-|+.+++-+++. ++||+.||.|++|++ ++.++..+.+|..-+++
T Consensus 149 l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYs 224 (745)
T KOG0301|consen 149 LPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYS 224 (745)
T ss_pred cCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEE
Confidence 88889999999999999986 667899999999999999987755 579999999999999 77888899999999999
Q ss_pred EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 008467 447 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 522 (564)
Q Consensus 447 i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~ 522 (564)
+...+.+. .++|++.|++++||+.. .+...+.--...|+++.+-++|. |++|+.||.|+||...
T Consensus 225 is~~~~~~---------~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 225 ISMALSDG---------LIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEecCCCC---------eEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 99555443 68999999999999986 77777775556899999988887 5678889999999876
No 87
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2e-28 Score=218.49 Aligned_cols=286 Identities=24% Similarity=0.427 Sum_probs=229.2
Q ss_pred eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
+..+.||.+.|..++-.....++.++|.|.+++||.++++.+.. .+.+|.+.|.++.|++.+.
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~-----------------~Y~GH~GSVNsikfh~s~~ 203 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLA-----------------TYTGHTGSVNSIKFHNSGL 203 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeecccccee-----------------eecccccceeeEEeccccc
Confidence 34678999999999988777899999999999999999876531 2335678899999999999
Q ss_pred EEEEEeCCCeEEEEEC------CC-----------------------------------ceeEeecCCCCCEEEEEeCCC
Q 008467 289 LLATGSYDGQARIWST------NG-----------------------------------DLKCTLSKHKGPIFSLKWNKK 327 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~------~~-----------------------------------~~~~~~~~h~~~V~~l~~~~~ 327 (564)
++++++.|++..||.. .. ...+.+.+|.+.|.+..|...
T Consensus 204 L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g 283 (481)
T KOG0300|consen 204 LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG 283 (481)
T ss_pred eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC
Confidence 9999999999999951 00 023456778888888888888
Q ss_pred CCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEE
Q 008467 328 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW 407 (564)
Q Consensus 328 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~ 407 (564)
|++++++|+|++..+||+++++ ++..+.||..+.+-++-
T Consensus 284 g~Q~vTaSWDRTAnlwDVEtge-----------------------------------------~v~~LtGHd~ELtHcst 322 (481)
T KOG0300|consen 284 GQQMVTASWDRTANLWDVETGE-----------------------------------------VVNILTGHDSELTHCST 322 (481)
T ss_pred cceeeeeeccccceeeeeccCc-----------------------------------------eeccccCcchhcccccc
Confidence 8888888888888888887765 44567889999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCe-eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EE
Q 008467 408 DPTGSLLASCSDDVTAKIWNMKQDK-YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LL 485 (564)
Q Consensus 408 ~~~~~~las~s~dg~i~iwd~~~~~-~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~ 485 (564)
+|..+++++.|.|.+.|+||++..- .+..|++|...|+++.|.-+. -+++||.|.+|+|||+++.+ .+
T Consensus 323 HptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd----------~vVSgSDDrTvKvWdLrNMRspl 392 (481)
T KOG0300|consen 323 HPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD----------RVVSGSDDRTVKVWDLRNMRSPL 392 (481)
T ss_pred CCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC----------ceeecCCCceEEEeeeccccCcc
Confidence 9999999999999999999998543 367789999999999998764 37899999999999999754 46
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE----ecCCC-EEEEEEccCC--CEEEEEEcCCcEE
Q 008467 486 YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY----TGNGG-IFEVCWNKEG--DKIAACFANHTVC 558 (564)
Q Consensus 486 ~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~----~~~~~-i~~~~w~~~g--~~la~~~~~~~v~ 558 (564)
.++. ...+++.++.+..+..||.--.+..|++||+....+...- .++.. +.+.+|..+- .-|.+|+-|..+.
T Consensus 393 ATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~ 471 (481)
T KOG0300|consen 393 ATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVA 471 (481)
T ss_pred eeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceee
Confidence 6665 4578999999998899999888899999999765543221 22333 6789997653 4666777788888
Q ss_pred EEEee
Q 008467 559 VLDFR 563 (564)
Q Consensus 559 v~~~~ 563 (564)
=|++.
T Consensus 472 gW~in 476 (481)
T KOG0300|consen 472 GWKIN 476 (481)
T ss_pred eeEec
Confidence 77763
No 88
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=3.7e-27 Score=240.90 Aligned_cols=227 Identities=18% Similarity=0.346 Sum_probs=181.9
Q ss_pred EeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCC-CCEEEEeeCCCcEEEEECCCcce-eEEEeecccCeEEEEcCCC
Q 008467 293 GSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEW-KQQFEFHSGPTLDVDWRNN 369 (564)
Q Consensus 293 g~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~ 369 (564)
|+.+|.+++|+... .....+.+|.++|.+++|+|+ +++|++|+.|++|+|||+.++.. ...
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~---------------- 113 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE---------------- 113 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc----------------
Confidence 66788999998643 345678899999999999997 78999999999999999976421 000
Q ss_pred ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCE-EEEEeCCCcEEEEeCCCCeeeeecccccccEEEEE
Q 008467 370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 448 (564)
Q Consensus 370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~-las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~ 448 (564)
...++..+.+|...|.+++|+|++.. |++++.|++|+|||++++..+..+. |...|.++.
T Consensus 114 ------------------i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Sls 174 (568)
T PTZ00420 114 ------------------IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLK 174 (568)
T ss_pred ------------------cccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEE
Confidence 01234567889999999999999875 5799999999999999988776665 567899999
Q ss_pred EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEE-----EEEcCCCCEEEEEeCCC----cEEEE
Q 008467 449 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS-----LAFSPTGEYLASGSLDK----SMHIW 519 (564)
Q Consensus 449 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~-----~~~spdg~~lasgs~dg----~i~iw 519 (564)
|+|+|. +|++++.|+.|+|||+++++.+.++.+|.+.+.+ ..|++++.+|+++|.|+ +|+||
T Consensus 175 wspdG~---------lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLW 245 (568)
T PTZ00420 175 WNIKGN---------LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLW 245 (568)
T ss_pred ECCCCC---------EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEE
Confidence 999886 7888999999999999999999999999876543 34678999999988774 79999
Q ss_pred eCCC-CeEEEEEecCC--CEEEEEEcc-CCCEEEEEEcCCcEEEEEee
Q 008467 520 SLKE-GKIVKTYTGNG--GIFEVCWNK-EGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 520 ~~~~-~~~~~~~~~~~--~i~~~~w~~-~g~~la~~~~~~~v~v~~~~ 563 (564)
|+++ ++.+....... ++.-..|++ +|.++++|..|++|++|+++
T Consensus 246 Dlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 246 DLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred ECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence 9985 55666554333 333345555 58899999999999999985
No 89
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=3.6e-28 Score=250.22 Aligned_cols=282 Identities=26% Similarity=0.397 Sum_probs=214.2
Q ss_pred ceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCC--CCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC
Q 008467 208 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADG--TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 285 (564)
Q Consensus 208 ~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 285 (564)
.+..+..|.+.|+|+.|+|||++||+||.|+.|.||+.... ......+.+..++...+.. .....|..+|..++|+|
T Consensus 61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~-~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVV-SILRGHDSDVLDVNWSP 139 (942)
T ss_pred hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEE-EEEecCCCccceeccCC
Confidence 45667889999999999999999999999999999998741 1111122222222222221 12234788999999999
Q ss_pred CCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEE
Q 008467 286 EGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 364 (564)
Q Consensus 286 ~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 364 (564)
++.+|++++.|+.|.||+.. ......+.+|.+.|-++.|.|-|+||++-+.|++|+||...+..+.+.+..+..
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~----- 214 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE----- 214 (942)
T ss_pred CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh-----
Confidence 99999999999999999964 467778999999999999999999999999999999998654333332211110
Q ss_pred EcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC----CCcEEEEeCCCCeeeeecccc
Q 008467 365 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD----DVTAKIWNMKQDKYVHDLREH 440 (564)
Q Consensus 365 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~----dg~i~iwd~~~~~~~~~~~~~ 440 (564)
. ..-...+..+.|||||++|++... -.++.|.+-.+.+.-..|.+|
T Consensus 215 -----------------------------~-~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH 264 (942)
T KOG0973|consen 215 -----------------------------E-SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGH 264 (942)
T ss_pred -----------------------------h-CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecC
Confidence 0 011234667999999999998643 336888888888888899999
Q ss_pred cccEEEEEEccCCCCCC-------CCC-CcEEEEEEeCCCeEEEEeCCCCeEEEEEeC-CCCCEEEEEEcCCCCEEEEEe
Q 008467 441 SKEIYTIRWSPTGSGTN-------NPN-QQLILASASFDSTVKLWDVELGKLLYSLNG-HREPVYSLAFSPTGEYLASGS 511 (564)
Q Consensus 441 ~~~i~~i~~~p~~~~~~-------~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~i~~~~~spdg~~lasgs 511 (564)
.+++.+++|+|.--... .++ ...++|+||.|++|.||.....+++..... ...+|.+++|||||..|.++|
T Consensus 265 ~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS 344 (942)
T KOG0973|consen 265 SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACS 344 (942)
T ss_pred CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEe
Confidence 99999999998421111 122 224899999999999999987777665432 246899999999999999999
Q ss_pred CCCcEEEEeCCCCe
Q 008467 512 LDKSMHIWSLKEGK 525 (564)
Q Consensus 512 ~dg~i~iw~~~~~~ 525 (564)
.||+|.++..+..+
T Consensus 345 ~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 345 LDGTVALIHFEEKE 358 (942)
T ss_pred cCCeEEEEEcchHH
Confidence 99999999988654
No 90
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2e-27 Score=212.40 Aligned_cols=291 Identities=23% Similarity=0.348 Sum_probs=213.0
Q ss_pred cCCceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEEC
Q 008467 205 PNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 284 (564)
Q Consensus 205 ~~~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s 284 (564)
.+-.+.+|+||.+.|++++|+.||++|||++.|++||||++.+-.... |...+.+.....-|.+.|+
T Consensus 75 Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~e-------------Hr~~R~nve~dhpT~V~Fa 141 (420)
T KOG2096|consen 75 HPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKE-------------HRCIRQNVEYDHPTRVVFA 141 (420)
T ss_pred cchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhh-------------hhHhhccccCCCceEEEEC
Confidence 334557899999999999999999999999999999999987532110 1111112223457899999
Q ss_pred CCCCEEEEEeC-CCeEEEEEC----CCcee---------EeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcce
Q 008467 285 GEGTLLATGSY-DGQARIWST----NGDLK---------CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW 350 (564)
Q Consensus 285 ~~g~~l~sg~~-dg~i~vw~~----~~~~~---------~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~ 350 (564)
||.+-++.... ...+++|.. +|... ..-..|.-+|..+-....+.+|++++.|..|.+|+++ |+.
T Consensus 142 pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~ 220 (420)
T KOG2096|consen 142 PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQL 220 (420)
T ss_pred CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cce
Confidence 99887666554 458899964 23221 1224577788888888889999999999999999998 788
Q ss_pred eEEEeecccCeEEEEcCCCceE-EEEeCCCeEEEEEcC--------CCceeeEecCCCcceEEEEECCCCCEEEEEeCCC
Q 008467 351 KQQFEFHSGPTLDVDWRNNVSF-ATSSTDNMIYVCKIG--------ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV 421 (564)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~i~~~~~~--------~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg 421 (564)
++.+........+....++.+| ++++.---+++|.+- +-+.+..+.||.+.|..++|+++...++|.|.||
T Consensus 221 L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG 300 (420)
T KOG2096|consen 221 LQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG 300 (420)
T ss_pred eeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC
Confidence 8777766665566666666555 555666667788642 1234567889999999999999999999999999
Q ss_pred cEEEEeCCCCe-------eeeec----ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE-e
Q 008467 422 TAKIWNMKQDK-------YVHDL----REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-N 489 (564)
Q Consensus 422 ~i~iwd~~~~~-------~~~~~----~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~ 489 (564)
++||||++-.. .+.+. ....+.-..+..+|.|. .|| .+.-.+++++..++|+..-++ +
T Consensus 301 ~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~---------~lA-~s~gs~l~~~~se~g~~~~~~e~ 370 (420)
T KOG2096|consen 301 KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD---------SLA-VSFGSDLKVFASEDGKDYPELED 370 (420)
T ss_pred cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc---------EEE-eecCCceEEEEcccCccchhHHH
Confidence 99999975321 11111 11223334778888875 343 445678999999998876655 4
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467 490 GHREPVYSLAFSPTGEYLASGSLDKSMHIWS 520 (564)
Q Consensus 490 ~h~~~i~~~~~spdg~~lasgs~dg~i~iw~ 520 (564)
.|...|.+|+|+|+|+++|++| |..++++.
T Consensus 371 ~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 371 IHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred hhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 5889999999999999999988 55677765
No 91
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=7.2e-27 Score=238.83 Aligned_cols=245 Identities=20% Similarity=0.325 Sum_probs=183.6
Q ss_pred EEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEECCCc----
Q 008467 233 SGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-GTLLATGSYDGQARIWSTNGD---- 307 (564)
Q Consensus 233 sgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g~~l~sg~~dg~i~vw~~~~~---- 307 (564)
+|+.++.+++|+..... .+..+ ..|...|.+++|+|+ +.+|++|+.||.|+||+....
T Consensus 49 gGG~~gvI~L~~~~r~~-------------~v~~L----~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~ 111 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKP-------------PVIKL----KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESV 111 (568)
T ss_pred CCCceeEEEeeecCCCc-------------eEEEE----cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccc
Confidence 36678889999864321 11122 245678999999996 799999999999999997521
Q ss_pred -----eeEeecCCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeE
Q 008467 308 -----LKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMI 381 (564)
Q Consensus 308 -----~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 381 (564)
....+.+|...|.+++|+|++..+ ++++.|++|+|||++++.....
T Consensus 112 ~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~---------------------------- 163 (568)
T PTZ00420 112 KEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ---------------------------- 163 (568)
T ss_pred cccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE----------------------------
Confidence 234678899999999999998765 6899999999999987643211
Q ss_pred EEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEE-----ccCCCCC
Q 008467 382 YVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW-----SPTGSGT 456 (564)
Q Consensus 382 ~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~-----~p~~~~~ 456 (564)
+. |...|.+++|+|+|.+|++++.|+.|+|||++++..+..+.+|.+.+.+..+ ++++.
T Consensus 164 -------------i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~-- 227 (568)
T PTZ00420 164 -------------IN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDN-- 227 (568)
T ss_pred -------------Ee-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCC--
Confidence 11 3456889999999999999999999999999999999999999876544332 34332
Q ss_pred CCCCCcEEEEEEeCCC----eEEEEeCCC-CeEEEEEe--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--E
Q 008467 457 NNPNQQLILASASFDS----TVKLWDVEL-GKLLYSLN--GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI--V 527 (564)
Q Consensus 457 ~~~~~~~~l~s~s~dg----~i~iwd~~~-~~~~~~~~--~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~--~ 527 (564)
+|++++.|+ +|+|||+++ ++++..+. .+...+......++|.++++|+.|+.|++|++..+.+ +
T Consensus 228 -------~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 228 -------YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKV 300 (568)
T ss_pred -------EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEee
Confidence 567766664 799999995 55555443 3334444455566799999999999999999987753 3
Q ss_pred EEEecCCCEEEEEEccCC
Q 008467 528 KTYTGNGGIFEVCWNKEG 545 (564)
Q Consensus 528 ~~~~~~~~i~~~~w~~~g 545 (564)
..+....+...++|.|+-
T Consensus 301 ~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 301 NEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred cccccCCCccceEEcccc
Confidence 334444567788998864
No 92
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=7.6e-29 Score=225.18 Aligned_cols=285 Identities=20% Similarity=0.357 Sum_probs=228.1
Q ss_pred eeEccCCccceEEEEECCCC-CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467 209 VTILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 287 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~-~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 287 (564)
+.-|.||.+.|.|++=+|.. ..+|||+.||.|+|||+..-.+.. ....|.+.|..+++..
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~-----------------~f~AH~G~V~Gi~v~~-- 119 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR-----------------TFKAHEGLVRGICVTQ-- 119 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh-----------------eeecccCceeeEEecc--
Confidence 45679999999999999986 899999999999999987533211 1123456788888876
Q ss_pred CEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467 288 TLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 367 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (564)
..+++++.|.+|+.|..++....++.+ .+.+.++.-+..++.++||+. .|-|||.+....++.+......+.++.+.
T Consensus 120 ~~~~tvgdDKtvK~wk~~~~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfN 196 (433)
T KOG0268|consen 120 TSFFTVGDDKTVKQWKIDGPPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFN 196 (433)
T ss_pred cceEEecCCcceeeeeccCCcceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecC
Confidence 678899999999999998876665543 356677777777788888875 69999998888888888777777777765
Q ss_pred C--CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-eeeeecccccccE
Q 008467 368 N--NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-KYVHDLREHSKEI 444 (564)
Q Consensus 368 ~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~-~~~~~~~~~~~~i 444 (564)
+ ...+++|..|+.|.++|+.+..|++... -.-.-+.|+|+|.+-.+++|++|..+..+|++.- .++...++|...|
T Consensus 197 pvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV 275 (433)
T KOG0268|consen 197 PVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAV 275 (433)
T ss_pred CCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeE
Confidence 4 4567888899999999999998876543 1334678999998778899999999999999764 4567778999999
Q ss_pred EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE-eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 008467 445 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 523 (564)
Q Consensus 445 ~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~ 523 (564)
.++.|+|.|. -+++||.|.+||||.+..+...-.. +.--..|.++.||.|.+|+++||.|+.|++|....
T Consensus 276 ~dVdfsptG~---------EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 276 MDVDFSPTGQ---------EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred EEeccCCCcc---------hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 9999999997 4899999999999999866432111 01124699999999999999999999999998765
Q ss_pred Ce
Q 008467 524 GK 525 (564)
Q Consensus 524 ~~ 525 (564)
.+
T Consensus 347 se 348 (433)
T KOG0268|consen 347 SE 348 (433)
T ss_pred hh
Confidence 43
No 93
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=5.7e-27 Score=229.61 Aligned_cols=272 Identities=22% Similarity=0.359 Sum_probs=231.8
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCcee---EeecCCCCCEEE-EEeCC-CCCEEEEeeCCCcEEEEECC
Q 008467 272 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK---CTLSKHKGPIFS-LKWNK-KGDYLLTGSCDKTAIVWDVK 346 (564)
Q Consensus 272 ~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~---~~~~~h~~~V~~-l~~~~-~~~~l~s~s~D~~v~iwd~~ 346 (564)
.+|..+|..++..+. ..+++++.||++++|+..++.. ..+.+|.+-|.. +++.+ ++-.+++|+.|+++.+|.+.
T Consensus 11 ~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~ 89 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS 89 (745)
T ss_pred ccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecC
Confidence 356778888876654 4789999999999999755432 346777777766 77775 33459999999999999999
Q ss_pred CcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEE
Q 008467 347 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 426 (564)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iw 426 (564)
.......+..|...+.++.-..+..++++|-|.++++|..++ ....+.||+..|.+++.-|++ .++|||.|.+|++|
T Consensus 90 ~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~--l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklW 166 (745)
T KOG0301|consen 90 QAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE--LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLW 166 (745)
T ss_pred CCCchhhhhccccceeeeecCCcCceEecccccceEEecchh--hhcccCCcchheeeeeecCCC-cEEeccCcceeeec
Confidence 999899999999999999977777799999999999998754 445689999999999999988 67899999999999
Q ss_pred eCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCE
Q 008467 427 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 506 (564)
Q Consensus 427 d~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~ 506 (564)
.- ++.+.+|.+|...|..++.-|++. ++||+.||.|++|++ +|.++.++.+|..-|++++..+++..
T Consensus 167 k~--~~~l~tf~gHtD~VRgL~vl~~~~----------flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~ 233 (745)
T KOG0301|consen 167 KG--GTLLKTFSGHTDCVRGLAVLDDSH----------FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGL 233 (745)
T ss_pred cC--CchhhhhccchhheeeeEEecCCC----------eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCe
Confidence 75 678899999999999999988753 789999999999999 69999999999999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEEecCC-CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 507 LASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 507 lasgs~dg~i~iw~~~~~~~~~~~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
++++|.|++++||+.. ++++.....+ .|++++.=+.|+.++. ++||.|+||..+
T Consensus 234 Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg-~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 234 IVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVG-GSDGRVRVFTVD 288 (745)
T ss_pred EEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEe-ccCceEEEEEec
Confidence 9999999999999976 7788777655 7888887777876555 479999999764
No 94
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=2.3e-26 Score=205.40 Aligned_cols=266 Identities=21% Similarity=0.358 Sum_probs=210.4
Q ss_pred ccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 008467 216 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 295 (564)
Q Consensus 216 ~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~ 295 (564)
...|..+.|+|.+..|+.++.||++++|++...... . .-.+..++++++|.++ ..+++|+.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~----------~--------~~~~~~plL~c~F~d~-~~~~~G~~ 73 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK----------L--------KFKHGAPLLDCAFADE-STIVTGGL 73 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh----------h--------heecCCceeeeeccCC-ceEEEecc
Confidence 467899999999988888999999999998653210 0 0124578999999874 67889999
Q ss_pred CCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEE
Q 008467 296 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS 375 (564)
Q Consensus 296 dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (564)
||.|+.+|.+......+..|..+|.++.+++....+++||+|++|++||.+.......+.
T Consensus 74 dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-------------------- 133 (323)
T KOG1036|consen 74 DGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-------------------- 133 (323)
T ss_pred CceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--------------------
Confidence 999999999988888899999999999999999999999999999999998632211110
Q ss_pred eCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecc--cccccEEEEEEccCC
Q 008467 376 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR--EHSKEIYTIRWSPTG 453 (564)
Q Consensus 376 ~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~--~~~~~i~~i~~~p~~ 453 (564)
....|.|+.. .|..|+.|+.|..+.+||+++.......+ ...-.+.+++.-|.+
T Consensus 134 ----------------------~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~ 189 (323)
T KOG1036|consen 134 ----------------------QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNG 189 (323)
T ss_pred ----------------------cCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCC
Confidence 1124555554 46788899999999999998766543222 123357888888865
Q ss_pred CCCCCCCCcEEEEEEeCCCeEEEEeCCCC----eEEEEEeCCCC---------CEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467 454 SGTNNPNQQLILASASFDSTVKLWDVELG----KLLYSLNGHRE---------PVYSLAFSPTGEYLASGSLDKSMHIWS 520 (564)
Q Consensus 454 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~h~~---------~i~~~~~spdg~~lasgs~dg~i~iw~ 520 (564)
.+ .+.+|.||.|.+=.++.. +..+.++.|.. ||++|+|+|--..||||+.||.|.+||
T Consensus 190 eG---------y~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 190 EG---------YVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWD 260 (323)
T ss_pred Cc---------eEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEcc
Confidence 42 577899999988666654 45567777753 799999999999999999999999999
Q ss_pred CCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEc
Q 008467 521 LKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFA 553 (564)
Q Consensus 521 ~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~ 553 (564)
..+.+.++.+..- ..|..++|+.+|..||+++.
T Consensus 261 ~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 261 LFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 9998888777654 56999999999999999864
No 95
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.4e-27 Score=232.14 Aligned_cols=287 Identities=20% Similarity=0.380 Sum_probs=225.0
Q ss_pred EEEECC-CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 008467 221 ACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA 299 (564)
Q Consensus 221 ~~~~sp-~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i 299 (564)
++..++ .+++|+|||.||.|++|++....... ... .......|+..|..+....+|+.|++++.|-+|
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~------s~~-----~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTV 97 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP------STP-----YIASMEHHSDWVNDIILCGNGKTLISASSDTTV 97 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCc------ccc-----hhhhhhhhHhHHhhHHhhcCCCceEEecCCceE
Confidence 444454 56789999999999999976432110 000 112223466788888888999999999999999
Q ss_pred EEEECCCc---eeEeecCCCCCEEEEEe-CCCCCEEEEeeCCCcEEEEECCCcce--eEEEeecccCeEEEEcCCCceEE
Q 008467 300 RIWSTNGD---LKCTLSKHKGPIFSLKW-NKKGDYLLTGSCDKTAIVWDVKTEEW--KQQFEFHSGPTLDVDWRNNVSFA 373 (564)
Q Consensus 300 ~vw~~~~~---~~~~~~~h~~~V~~l~~-~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 373 (564)
++|+.... ...++..|+..|.|++. -++...++||+-|+.|++||++++.. ...+.
T Consensus 98 K~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n------------------ 159 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN------------------ 159 (735)
T ss_pred EEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc------------------
Confidence 99997643 45578899999999999 78888999999999999999998732 11111
Q ss_pred EEeCCCeEEEEEcCCCceeeEec-CCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccC
Q 008467 374 TSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 452 (564)
Q Consensus 374 ~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~ 452 (564)
.+ +...+. |+...|.+++.++.|..|++|+..+.+++||.++.+.+..+++|...|..+..+++
T Consensus 160 ------~~---------t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dD 224 (735)
T KOG0308|consen 160 ------NV---------TVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDD 224 (735)
T ss_pred ------cc---------ccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCC
Confidence 11 111122 78888999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEEEe
Q 008467 453 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE-GKIVKTYT 531 (564)
Q Consensus 453 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~-~~~~~~~~ 531 (564)
|. .++|+|.||+|++||+...+|++++..|...|+++..+|+=..+.+|+.||.|..=|+++ .+....+.
T Consensus 225 Gt---------~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick 295 (735)
T KOG0308|consen 225 GT---------RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK 295 (735)
T ss_pred CC---------eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeec
Confidence 86 588999999999999999999999999999999999999999999999999999999988 44555555
Q ss_pred cCCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467 532 GNGGIFEVCWNKEGDKIAACFANHTVCVL 560 (564)
Q Consensus 532 ~~~~i~~~~w~~~g~~la~~~~~~~v~v~ 560 (564)
....+..+..+.+.+-+-++..|+.|.=|
T Consensus 296 ~daPv~~l~~~~~~~~~WvtTtds~I~rW 324 (735)
T KOG0308|consen 296 EDAPVLKLHLHEHDNSVWVTTTDSSIKRW 324 (735)
T ss_pred CCCchhhhhhccccCCceeeeccccceec
Confidence 55555555555444443444455555444
No 96
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1e-25 Score=202.37 Aligned_cols=242 Identities=19% Similarity=0.295 Sum_probs=199.2
Q ss_pred eecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC-CceEEEEe--CCCeEEEEEcC
Q 008467 311 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSS--TDNMIYVCKIG 387 (564)
Q Consensus 311 ~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~d~~i~~~~~~ 387 (564)
.+....+.|.++.|+++|.++++++.|.+++|||..+++.++++..+.-.+-.+.+.. ....+.++ .|.+|+..++.
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence 4455678899999999999999999999999999999999998887765555555532 23333344 38899999999
Q ss_pred CCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEE
Q 008467 388 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS 467 (564)
Q Consensus 388 ~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s 467 (564)
.++-++.|.||...|++++.+|-+..++|+|.|++||+||++..++..-+..... ..++|.|.|- ++|+
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GL---------ifA~ 157 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGL---------IFAL 157 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCc---------EEEE
Confidence 9999999999999999999999999999999999999999998887666554433 3467888873 7888
Q ss_pred EeCCCeEEEEeCCCC--eEE--EEEe-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCC----EEE
Q 008467 468 ASFDSTVKLWDVELG--KLL--YSLN-GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG----IFE 538 (564)
Q Consensus 468 ~s~dg~i~iwd~~~~--~~~--~~~~-~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~----i~~ 538 (564)
+.....|++||++.- .+. ..+. +.....+.|.|||||++|..++..+.+++.|.-+|.+..++..... ..+
T Consensus 158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence 877779999999863 222 2232 3456789999999999999999999999999999999988876432 257
Q ss_pred EEEccCCCEEEEEEcCCcEEEEEee
Q 008467 539 VCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 539 ~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
.+|.|||+++..|+.||+|+||+++
T Consensus 238 a~ftPds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcC
Confidence 8999999999999999999999974
No 97
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.5e-26 Score=215.93 Aligned_cols=275 Identities=23% Similarity=0.345 Sum_probs=222.7
Q ss_pred cceEEEEECCCCC-EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 008467 217 SEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 295 (564)
Q Consensus 217 ~~V~~~~~sp~~~-~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~ 295 (564)
+.|..++|||... -+|+.+ .-.+.||+..+.... +.+ ..-.+.|.+++|-.||++|+.|..
T Consensus 27 ~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~-------------k~~----srFk~~v~s~~fR~DG~LlaaGD~ 88 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVR-------------KTF----SRFKDVVYSVDFRSDGRLLAAGDE 88 (487)
T ss_pred CcceeEecCCCCCCceEEec-ccEEEEEecchhhhh-------------hhH----HhhccceeEEEeecCCeEEEccCC
Confidence 6799999999754 344433 245777775432211 100 111357999999999999999999
Q ss_pred CCeEEEEECCCc-eeEeecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC--Cce
Q 008467 296 DGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN--NVS 371 (564)
Q Consensus 296 dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 371 (564)
.|.|+|+|.... ....+..|+.||..+.|+|.++ .|++|+.|+.+++||+.+...+..+..|...+.+.+|.+ +..
T Consensus 89 sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hi 168 (487)
T KOG0310|consen 89 SGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHI 168 (487)
T ss_pred cCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeE
Confidence 999999995542 4557889999999999999775 567888889999999999887557888999998888864 456
Q ss_pred EEEEeCCCeEEEEEcCCC-ceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee-eeecccccccEEEEEE
Q 008467 372 FATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHDLREHSKEIYTIRW 449 (564)
Q Consensus 372 ~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~i~~ 449 (564)
+++++-||.|++||.+.. .++..+ .|..+|..+.+-|.|.++|+++.. .+++||+.++.. +..+..|...|+|+++
T Consensus 169 vvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l 246 (487)
T KOG0310|consen 169 VVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRL 246 (487)
T ss_pred EEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEe
Confidence 899999999999999876 555555 588999999999999999998765 799999985544 4555569999999999
Q ss_pred ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467 450 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 521 (564)
Q Consensus 450 ~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~ 521 (564)
..++. .|+||+-|+.|++||+.+-+.++.+. ..+||.+++.||+++.++.|-.+|.+.+=+.
T Consensus 247 ~s~~~---------rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 247 ASDST---------RLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred ecCCc---------eEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehh
Confidence 87654 68999999999999999889998887 6789999999999999999999998877643
No 98
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.3e-26 Score=203.94 Aligned_cols=259 Identities=21% Similarity=0.347 Sum_probs=203.9
Q ss_pred eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
...+..|.++++++|. ++.++||||.|-+|+|||+......+ ....|.+.|+++.|.+.-.
T Consensus 36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg-----------------~ll~HagsitaL~F~~~~S 96 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLG-----------------ILLSHAGSITALKFYPPLS 96 (362)
T ss_pred cccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhc-----------------ceeccccceEEEEecCCcc
Confidence 3456789999999998 48999999999999999987643221 1123467899999999765
Q ss_pred --EEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEE
Q 008467 289 --LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 365 (564)
Q Consensus 289 --~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (564)
.|++|+.||.|.+|+... .+...+.+|++.|+.++.+|.|+.-++.+.|+.++.||+-+|..-.
T Consensus 97 ~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~------------- 163 (362)
T KOG0294|consen 97 KSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF------------- 163 (362)
T ss_pred hhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce-------------
Confidence 899999999999999865 5667899999999999999999999999999999999997764221
Q ss_pred cCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEE
Q 008467 366 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 445 (564)
Q Consensus 366 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~ 445 (564)
++.++ + ..+.+.|+|.|.+++.++.+ .|-||.+.+......+.. ...+.
T Consensus 164 -----------------v~~L~----------~--~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l 212 (362)
T KOG0294|consen 164 -----------------VLNLK----------N--KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-PKRIL 212 (362)
T ss_pred -----------------eeccC----------C--cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-cccce
Confidence 11111 1 12238999999988877776 588998877655444332 24566
Q ss_pred EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEE--cCCCCEEEEEeCCCcEEEEeCCC
Q 008467 446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF--SPTGEYLASGSLDKSMHIWSLKE 523 (564)
Q Consensus 446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~--spdg~~lasgs~dg~i~iw~~~~ 523 (564)
++.|-..+ .|++|..|+.|++||..++.+...+.+|...|-++.+ .|++.+|+|+|.||.|+|||++.
T Consensus 213 ~~~~l~~~----------~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 213 CATFLDGS----------ELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred eeeecCCc----------eEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 76664432 6889999999999999999999999999999999984 57899999999999999999986
Q ss_pred C-----eEEEEEecCCCEEEEE
Q 008467 524 G-----KIVKTYTGNGGIFEVC 540 (564)
Q Consensus 524 ~-----~~~~~~~~~~~i~~~~ 540 (564)
. +++..+..+..++++.
T Consensus 283 ~~k~~~~~l~e~n~~~RltCl~ 304 (362)
T KOG0294|consen 283 ETKKRPTLLAELNTNVRLTCLR 304 (362)
T ss_pred cccCCcceeEEeecCCccceee
Confidence 5 4666666555555543
No 99
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.3e-26 Score=215.37 Aligned_cols=235 Identities=25% Similarity=0.374 Sum_probs=203.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467 276 KDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 354 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 354 (564)
..++++...|....+++|+.|..+.++|.. ++....+.+|...|+.+.|+|+...+++++.|..|+||.......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~---- 295 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE---- 295 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC----
Confidence 468888888887899999999999999975 566778999999999999999999999999999999998654321
Q ss_pred eecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee
Q 008467 355 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 434 (564)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~ 434 (564)
......|..+|+.+..+|.|.+|+++|+|+++-+.|++++..+
T Consensus 296 -------------------------------------~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~l 338 (506)
T KOG0289|consen 296 -------------------------------------PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQL 338 (506)
T ss_pred -------------------------------------ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEE
Confidence 1234568999999999999999999999999999999999877
Q ss_pred eeccc--ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC
Q 008467 435 HDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL 512 (564)
Q Consensus 435 ~~~~~--~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~ 512 (564)
..... ..-.+++.+|+|+|- +|.+|..||.|+|||+.++..+..+.+|.++|..|+|+.+|.|||++..
T Consensus 339 t~vs~~~s~v~~ts~~fHpDgL---------ifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad 409 (506)
T KOG0289|consen 339 TVVSDETSDVEYTSAAFHPDGL---------IFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD 409 (506)
T ss_pred EEEeeccccceeEEeeEcCCce---------EEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec
Confidence 55443 223589999999984 8999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCeEEEEEecCC--CEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 513 DKSMHIWSLKEGKIVKTYTGNG--GIFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 513 dg~i~iw~~~~~~~~~~~~~~~--~i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
|+.|++||++.-+..+++.-.. ++.+++|++.|++|+.++.+ +.||-+
T Consensus 410 d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~--l~Vy~~ 459 (506)
T KOG0289|consen 410 DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD--LQVYIC 459 (506)
T ss_pred CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecce--eEEEEE
Confidence 9999999999888888876543 59999999999999999655 555543
No 100
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4e-27 Score=203.21 Aligned_cols=255 Identities=26% Similarity=0.418 Sum_probs=196.4
Q ss_pred eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC--CC
Q 008467 210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EG 287 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g 287 (564)
.+-.+|.+.|..+...--|++|||++.|++|||+.+.+... .. .+ ....+|.++|.-++|-. -|
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~--------s~--ll----~~L~Gh~GPVwqv~wahPk~G 70 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ--------SK--LL----AELTGHSGPVWKVAWAHPKFG 70 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC--------ce--ee----eEecCCCCCeeEEeecccccC
Confidence 34567999999998888999999999999999999865421 01 11 12345688999999977 89
Q ss_pred CEEEEEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEeCCCC--CEEEEeeCCCcEEEEECCCc-ceeEEEeecccCe
Q 008467 288 TLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKG--DYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPT 361 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~--~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~ 361 (564)
.+||++++||.|.||..++. .......|..+|.+++|.|.+ -.|+++++||.|.|.+.+.. .+..
T Consensus 71 ~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t--------- 141 (299)
T KOG1332|consen 71 TILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT--------- 141 (299)
T ss_pred cEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccc---------
Confidence 99999999999999997654 234567899999999998864 56889999999999987543 1110
Q ss_pred EEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC---C-----------CEEEEEeCCCcEEEEe
Q 008467 362 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT---G-----------SLLASCSDDVTAKIWN 427 (564)
Q Consensus 362 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~---~-----------~~las~s~dg~i~iwd 427 (564)
-+....|.-.|++++|.|- | +.|+||+.|..|+||+
T Consensus 142 ------------------------------~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~ 191 (299)
T KOG1332|consen 142 ------------------------------SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWK 191 (299)
T ss_pred ------------------------------hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeee
Confidence 1123446666777777664 3 5699999999999999
Q ss_pred CCCCee--eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE---EEEEeCCCCCEEEEEEcC
Q 008467 428 MKQDKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL---LYSLNGHREPVYSLAFSP 502 (564)
Q Consensus 428 ~~~~~~--~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~h~~~i~~~~~sp 502 (564)
...+.. -+.|.+|..-|..++|.|.... ....|||||.||+|.||..+.... ...+.....+++.++||+
T Consensus 192 ~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl-----~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~ 266 (299)
T KOG1332|consen 192 FDSDSWKLERTLEGHKDWVRDVAWAPSVGL-----PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSL 266 (299)
T ss_pred cCCcchhhhhhhhhcchhhhhhhhccccCC-----CceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEec
Confidence 887643 3458899999999999997532 234799999999999998763211 112333456899999999
Q ss_pred CCCEEEEEeCCCcEEEEeCC
Q 008467 503 TGEYLASGSLDKSMHIWSLK 522 (564)
Q Consensus 503 dg~~lasgs~dg~i~iw~~~ 522 (564)
.|+.|+.++.|+.|.+|.-.
T Consensus 267 sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 267 SGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cccEEEEecCCcEEEEEEeC
Confidence 99999999999999999753
No 101
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=2.7e-27 Score=211.92 Aligned_cols=238 Identities=22% Similarity=0.431 Sum_probs=203.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEC-CCceeE--------eecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC
Q 008467 275 SKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKC--------TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 345 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~-~~~~~~--------~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~ 345 (564)
.+.+-|..|||||++|++|+.||.|.+|+. .|++.. .+--|..+|.|+.|+.+...+++|+.||.|++|.+
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 456889999999999999999999999995 454432 23357889999999999999999999999999999
Q ss_pred CCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEE
Q 008467 346 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 425 (564)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~i 425 (564)
++|.+++.|. +.|+..|+|+.|+.|+..+.++|.|.++||
T Consensus 293 ~tG~ClRrFd----------------------------------------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRi 332 (508)
T KOG0275|consen 293 ETGQCLRRFD----------------------------------------RAHTKGVTCLSFSRDNSQILSASFDQTVRI 332 (508)
T ss_pred ecchHHHHhh----------------------------------------hhhccCeeEEEEccCcchhhcccccceEEE
Confidence 9887665442 368889999999999999999999999999
Q ss_pred EeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC--CCCCEEEEEEcCC
Q 008467 426 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSPT 503 (564)
Q Consensus 426 wd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~i~~~~~spd 503 (564)
--+++++++.+|++|..-|....|.++|. .++++|.||+|++|+..+++|+.+++. ...+|+++-.-|.
T Consensus 333 HGlKSGK~LKEfrGHsSyvn~a~ft~dG~---------~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PK 403 (508)
T KOG0275|consen 333 HGLKSGKCLKEFRGHSSYVNEATFTDDGH---------HIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPK 403 (508)
T ss_pred eccccchhHHHhcCccccccceEEcCCCC---------eEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCC
Confidence 99999999999999999999999999986 688999999999999999999888754 4567888887775
Q ss_pred C-CEEEEEeCCCcEEEEeCCCCeEEEEEec----CCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 504 G-EYLASGSLDKSMHIWSLKEGKIVKTYTG----NGGIFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 504 g-~~lasgs~dg~i~iw~~~~~~~~~~~~~----~~~i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
. ..++.+...++|+|-++. |.++++|.. .+.....+.+|.|.++-+...|+.+.-|++
T Consensus 404 npeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~ 466 (508)
T KOG0275|consen 404 NPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSV 466 (508)
T ss_pred CCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEe
Confidence 4 678889999999999985 788888864 234567889999999888878877655543
No 102
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=2.4e-26 Score=215.47 Aligned_cols=258 Identities=26% Similarity=0.503 Sum_probs=202.0
Q ss_pred EccCCccceEEEEECCCC-CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC-CC
Q 008467 211 ILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-GT 288 (564)
Q Consensus 211 ~l~~h~~~V~~~~~sp~~-~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g~ 288 (564)
....|.++|+.+..-|+. .++||++..+.+.|||................-+.+ . +|.+.=+.|+|++. .-
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L---~----gH~~eg~glsWn~~~~g 191 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRL---K----GHEKEGYGLSWNRQQEG 191 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEE---E----eecccccccccccccce
Confidence 345699999999999974 688889999999999987643322211100000111 1 22333466999994 34
Q ss_pred EEEEEeCCCeEEEEECCCc--------eeEeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCcceeEEEeeccc
Q 008467 289 LLATGSYDGQARIWSTNGD--------LKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 359 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~~~--------~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 359 (564)
.|++|+.|+.|++||.+.. .+..+.+|...|..++|++.. ..|.+++.|+.+.|||++++.
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~---------- 261 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT---------- 261 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC----------
Confidence 7889999999999997532 345688999999999999965 457889999999999998631
Q ss_pred CeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC-CCEEEEEeCCCcEEEEeCCCC-eeeeec
Q 008467 360 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQD-KYVHDL 437 (564)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~-~~~las~s~dg~i~iwd~~~~-~~~~~~ 437 (564)
.++.....+|.++|+|++|+|- +.+|||||.|++|.+||+++- .+++.+
T Consensus 262 -----------------------------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~ 312 (422)
T KOG0264|consen 262 -----------------------------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTF 312 (422)
T ss_pred -----------------------------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceec
Confidence 2334456789999999999995 567899999999999999875 457899
Q ss_pred ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--------------eEEEEEeCCCCCEEEEEEcCC
Q 008467 438 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--------------KLLYSLNGHREPVYSLAFSPT 503 (564)
Q Consensus 438 ~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--------------~~~~~~~~h~~~i~~~~~spd 503 (564)
.+|...|..+.|+|... .+|||++.|+.+.|||+..- ++++.-.||...|..++|+|.
T Consensus 313 e~H~dev~~V~WSPh~e--------tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ 384 (422)
T KOG0264|consen 313 EGHEDEVFQVEWSPHNE--------TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPN 384 (422)
T ss_pred cCCCcceEEEEeCCCCC--------ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCC
Confidence 99999999999999764 48999999999999998531 345677899999999999999
Q ss_pred CCE-EEEEeCCCcEEEEeCC
Q 008467 504 GEY-LASGSLDKSMHIWSLK 522 (564)
Q Consensus 504 g~~-lasgs~dg~i~iw~~~ 522 (564)
..+ |++++.|+.+.||...
T Consensus 385 ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 385 EPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCeEEEEecCCceEEEeecc
Confidence 876 5788999999999875
No 103
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.7e-27 Score=203.42 Aligned_cols=246 Identities=26% Similarity=0.504 Sum_probs=193.8
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECC--C--ceeEeecCCCCCEEEEEeCC--CCCEEEEeeCCCcEEEEECCCc
Q 008467 275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTN--G--DLKCTLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTE 348 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~--~--~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~~ 348 (564)
...|..+...--|+.|||++.|++|+|+... + .+..++.+|.+||+.+.|.. -|..|++++.||.|.||.-..+
T Consensus 11 ~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g 90 (299)
T KOG1332|consen 11 EDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG 90 (299)
T ss_pred hhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC
Confidence 3445555555568999999999999999864 2 46678999999999999976 7899999999999999987666
Q ss_pred ceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC--CCEEEEEeCCCcEEEE
Q 008467 349 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIW 426 (564)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~--~~~las~s~dg~i~iw 426 (564)
.+.+ ...+..|...|++++|-|. |-+||+++.||.|.|.
T Consensus 91 ~w~k---------------------------------------~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl 131 (299)
T KOG1332|consen 91 RWTK---------------------------------------AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVL 131 (299)
T ss_pred chhh---------------------------------------hhhhhhhcccceeecccccccceEEEEeeCCCcEEEE
Confidence 4432 2345679999999999885 5679999999999999
Q ss_pred eCCCC-e--eeeecccccccEEEEEEccCCCC---CC-CCC-CcEEEEEEeCCCeEEEEeCCCCe--EEEEEeCCCCCEE
Q 008467 427 NMKQD-K--YVHDLREHSKEIYTIRWSPTGSG---TN-NPN-QQLILASASFDSTVKLWDVELGK--LLYSLNGHREPVY 496 (564)
Q Consensus 427 d~~~~-~--~~~~~~~~~~~i~~i~~~p~~~~---~~-~~~-~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~i~ 496 (564)
+.+.. . .......|.-.|.+++|.|.... .. .+. .-..|+||+.|..|+||+..+++ .-.+|.+|.+.|.
T Consensus 132 ~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVR 211 (299)
T KOG1332|consen 132 TYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVR 211 (299)
T ss_pred EEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhh
Confidence 88765 1 12345679899999999997321 11 111 12358999999999999988763 2345889999999
Q ss_pred EEEEcCCC----CEEEEEeCCCcEEEEeCCC------CeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 497 SLAFSPTG----EYLASGSLDKSMHIWSLKE------GKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 497 ~~~~spdg----~~lasgs~dg~i~iw~~~~------~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
.++|.|.- .+||++|.||+|.||.... .++++.| ...++.++||..|+.||+++.|..|.+|-
T Consensus 212 DVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f--~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 212 DVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF--PDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred hhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC--CcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 99999974 5799999999999998762 1234443 35689999999999999999999999884
No 104
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=1.2e-25 Score=220.28 Aligned_cols=345 Identities=25% Similarity=0.381 Sum_probs=254.3
Q ss_pred ceeEccCCccceEEEEECCCCC---EEEEEECCCcEEEEeCCCCCCCC---------CCCCCCceEEEEEe------ecc
Q 008467 208 DVTILEGHTSEVCACAWSPAGS---LLASGSGDSTARIWTIADGTSNG---------GAQNGPLNVLVLKH------VKG 269 (564)
Q Consensus 208 ~~~~l~~h~~~V~~~~~sp~~~---~lasgs~D~~i~iW~~~~~~~~~---------~~~~~~~~~~~~~~------~~~ 269 (564)
.+..|.||.+.|..++|+..+. +|||+|.|..||||.+.-+.... ...+.+.. ..+.+ +..
T Consensus 183 ~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f-~~l~~i~~~is~ea 261 (764)
T KOG1063|consen 183 RVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVF-MILEEIQYRISFEA 261 (764)
T ss_pred EEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCcee-eeeeeEEEEEehhh
Confidence 3567899999999999998654 89999999999999875332111 01111110 11111 112
Q ss_pred ccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc---eeE-----eecCCCCCEEEEEeCCCCCEEEEeeCCCcEE
Q 008467 270 RTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKC-----TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAI 341 (564)
Q Consensus 270 ~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~---~~~-----~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~ 341 (564)
...+|...|.++.|+|.+..|++++.|.++.+|..+.. ... .+.+..+.-++.-|+|+++.+++-+.-|-.+
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 34478899999999999999999999999999986543 222 2334456689999999999999999999999
Q ss_pred EEEC-CCcceeE--EEeecccCeEEEEcCCCc-eEEEEeCCCeEEEEEcCCCce----eeEecCCCcceEEEEECCCCCE
Q 008467 342 VWDV-KTEEWKQ--QFEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRP----IKTFAGHQGEVNCVKWDPTGSL 413 (564)
Q Consensus 342 iwd~-~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~----~~~~~~h~~~i~~v~~~~~~~~ 413 (564)
+|-. ....|.+ .+..|...+.+++|.+.. .+++.+.|.+-+++-....+. +..-.-|...++|+++-+....
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 9972 2233333 356788899999998654 557888999888876542211 1112347778999999885566
Q ss_pred EEEEeCCCcEEEEeCCC-------------------------------------------Ce------------------
Q 008467 414 LASCSDDVTAKIWNMKQ-------------------------------------------DK------------------ 432 (564)
Q Consensus 414 las~s~dg~i~iwd~~~-------------------------------------------~~------------------ 432 (564)
+++|.+...+|+|+... +.
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 78999999999997510 00
Q ss_pred ---------------eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC-----eEEEEeCCCCeEEEEEeCCC
Q 008467 433 ---------------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS-----TVKLWDVELGKLLYSLNGHR 492 (564)
Q Consensus 433 ---------------~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~h~ 492 (564)
.++.+.+|.-.|++++.+|++. ++||++... .|++|+..+-..+..+.+|.
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn---------liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~Hs 572 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN---------LIASACKSSLKEHAVIRLWNTANWLQVQELEGHS 572 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC---------EEeehhhhCCccceEEEEEeccchhhhheecccc
Confidence 0112345667788888888775 788877543 59999999888888999999
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE-EE---EecCCC-EEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 493 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV-KT---YTGNGG-IFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 493 ~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~-~~---~~~~~~-i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
-.|+.++|||||+||++.|.|+++.+|........ .. ...+.. |.+.+|+|++.++|+|+.|+.|.||..
T Consensus 573 LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 573 LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE 647 (764)
T ss_pred eEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence 99999999999999999999999999998654211 11 223333 689999999999999999999999964
No 105
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=5.2e-24 Score=201.54 Aligned_cols=312 Identities=21% Similarity=0.361 Sum_probs=228.7
Q ss_pred ccceEEEEECCCCC-EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 008467 216 TSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 294 (564)
Q Consensus 216 ~~~V~~~~~sp~~~-~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~ 294 (564)
+..|..+.|+|.+. ++.+. +.|.+..|++..+.... ++-.-.... .+.|+|++|.++|. +++|.
T Consensus 200 ne~v~~a~FHPtd~nliit~-Gk~H~~Fw~~~~~~l~k------------~~~~fek~e-kk~Vl~v~F~engd-viTgD 264 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITC-GKGHLYFWTLRGGSLVK------------RQGIFEKRE-KKFVLCVTFLENGD-VITGD 264 (626)
T ss_pred cceEEEEEeccCCCcEEEEe-CCceEEEEEccCCceEE------------Eeecccccc-ceEEEEEEEcCCCC-EEeec
Confidence 35678999999764 55555 56899999987653211 111111112 27799999999997 56999
Q ss_pred CCCeEEEEECCCce-eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeE-EEeecccCeEEEEcCCCceE
Q 008467 295 YDGQARIWSTNGDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ-QFEFHSGPTLDVDWRNNVSF 372 (564)
Q Consensus 295 ~dg~i~vw~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 372 (564)
.+|.|.||+..+.. ......|.+.|++|+...+|. |+||+.|+.|..||-.-.+... .+.-..+++..+.-.... +
T Consensus 265 S~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~d-i 342 (626)
T KOG2106|consen 265 SGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGD-I 342 (626)
T ss_pred CCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCc-E
Confidence 99999999987543 333449999999999999986 5569999999999932222111 122233445444433223 6
Q ss_pred EEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccC
Q 008467 373 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 452 (564)
Q Consensus 373 ~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~ 452 (564)
..+...+.|..-.+..+-.+ +..||......++.+|+..+++||+.|+.+++|+ ..++..+. .-..++.++.|+|.
T Consensus 343 ~vGTtrN~iL~Gt~~~~f~~-~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhps 418 (626)
T KOG2106|consen 343 LVGTTRNFILQGTLENGFTL-TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPS 418 (626)
T ss_pred EEeeccceEEEeeecCCceE-EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE-EecCceeEeeccCc
Confidence 66666666666555544333 4458999999999999999999999999999999 33333322 23467789999997
Q ss_pred CCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EE---E
Q 008467 453 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK-IV---K 528 (564)
Q Consensus 453 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~-~~---~ 528 (564)
| .+|.|...|...+.|.++...+..-.. ..++++++|+|+|.+||.|+.|+.|+||.+.... .. .
T Consensus 419 g----------~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~ 487 (626)
T KOG2106|consen 419 G----------VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG 487 (626)
T ss_pred c----------eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee
Confidence 7 589999999999999998655544444 8899999999999999999999999999986543 22 2
Q ss_pred EEecCCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467 529 TYTGNGGIFEVCWNKEGDKIAACFANHTVCVL 560 (564)
Q Consensus 529 ~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~ 560 (564)
...+ ..|+.+.|++|+++|.+-+.|-.+-.|
T Consensus 488 k~~g-s~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 488 KCSG-SPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred eecC-ceeEEeeecCCCceEEeccCceEEEEE
Confidence 2333 679999999999999999888777777
No 106
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2e-25 Score=218.83 Aligned_cols=328 Identities=21% Similarity=0.361 Sum_probs=247.5
Q ss_pred eEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCC---CCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 008467 219 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQ---NGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 295 (564)
Q Consensus 219 V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~ 295 (564)
.-+|.|+|....|...-.|..++|||+.+-...+... .+...++.+.... .+.+...--|+ |.+ .|+|++.
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p--~nv~~~~~acl---p~~-cF~TCSs 400 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLP--CNVHSPTAACL---PRG-CFTTCSS 400 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeecccc--ccccCcccccC---Ccc-ceeEecC
Confidence 4578899998888888899999999997643322111 0111111111110 01111111111 223 3889999
Q ss_pred CCeEEEEECCC----ceeE--ee--------------------------------cCCCCCEEEEEeCCCCCEEEEeeCC
Q 008467 296 DGQARIWSTNG----DLKC--TL--------------------------------SKHKGPIFSLKWNKKGDYLLTGSCD 337 (564)
Q Consensus 296 dg~i~vw~~~~----~~~~--~~--------------------------------~~h~~~V~~l~~~~~~~~l~s~s~D 337 (564)
||+||+|++.+ .... .+ -.....+.+++.+|+|++|++|..-
T Consensus 401 D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~ 480 (1080)
T KOG1408|consen 401 DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG 480 (1080)
T ss_pred CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCcc
Confidence 99999999764 2100 00 0123468999999999999999999
Q ss_pred CcEEEEECCCcceeEEEeecccCeEEEEcCC----CceEEEEeCCCeEEEEEcCCC-ceeeEecCCCcceEEEEECCCC-
Q 008467 338 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN----NVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTG- 411 (564)
Q Consensus 338 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~v~~~~~~- 411 (564)
|+++||++..-+....++.|...++++.+.. ...+++++.|..|+++|+..+ .+++++.+|...|+++.|-..|
T Consensus 481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gl 560 (1080)
T KOG1408|consen 481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGL 560 (1080)
T ss_pred CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCC
Confidence 9999999999888888999999999998864 356889999999999999765 4678899999999999998777
Q ss_pred -CEEEEEeCCCcEEEEeCCC-Ceeeeeccc-----ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE
Q 008467 412 -SLLASCSDDVTAKIWNMKQ-DKYVHDLRE-----HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL 484 (564)
Q Consensus 412 -~~las~s~dg~i~iwd~~~-~~~~~~~~~-----~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 484 (564)
..+++|+.|..|.+ +... ..-...|.. ....++.++..|... ++++++.|..|+|||+.+|+.
T Consensus 561 n~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k---------~v~t~cQDrnirif~i~sgKq 630 (1080)
T KOG1408|consen 561 NRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK---------LVVTVCQDRNIRIFDIESGKQ 630 (1080)
T ss_pred ceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCCCcc---------eEEEEecccceEEEeccccce
Confidence 56889999987653 3322 111111111 234678888877653 788999999999999999999
Q ss_pred EEEEeC---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC-CEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467 485 LYSLNG---HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVL 560 (564)
Q Consensus 485 ~~~~~~---h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~ 560 (564)
+..+++ |.+..-.+...|.|-|||+...|+++.++|.-+|+++....+++ .|+.+-|.+|=++|...++||.|.||
T Consensus 631 ~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 631 VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVW 710 (1080)
T ss_pred eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEE
Confidence 999875 55667788999999999999999999999999999999888776 47899999999999999999999999
Q ss_pred Ee
Q 008467 561 DF 562 (564)
Q Consensus 561 ~~ 562 (564)
-+
T Consensus 711 ~l 712 (1080)
T KOG1408|consen 711 KL 712 (1080)
T ss_pred EC
Confidence 75
No 107
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=6.6e-26 Score=202.00 Aligned_cols=280 Identities=21% Similarity=0.366 Sum_probs=225.1
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-------------------ceeEeecCCCCCEEEEEeCCCCCEEEEe
Q 008467 274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-------------------DLKCTLSKHKGPIFSLKWNKKGDYLLTG 334 (564)
Q Consensus 274 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-------------------~~~~~~~~h~~~V~~l~~~~~~~~l~s~ 334 (564)
|..++.+.+||+||.++++|+.|..|+|.|++. .+..++-.|..+|..+.|+|....|++|
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~ 190 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISG 190 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEec
Confidence 456788999999999999999999999998641 1345677899999999999999999999
Q ss_pred eCCCcEEEEECCCcceeEEEe--ecccCeEEEEcCCCceEEEEeCC-CeEEEEEcCCCceeeE---ecCCCcceEEEEEC
Q 008467 335 SCDKTAIVWDVKTEEWKQQFE--FHSGPTLDVDWRNNVSFATSSTD-NMIYVCKIGENRPIKT---FAGHQGEVNCVKWD 408 (564)
Q Consensus 335 s~D~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d-~~i~~~~~~~~~~~~~---~~~h~~~i~~v~~~ 408 (564)
+.|++|+++|......++.+. ....++.++.+++...|+..+.| ..+++|++.+-++... -.+|.+.|+++.++
T Consensus 191 srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys 270 (430)
T KOG0640|consen 191 SRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYS 270 (430)
T ss_pred cCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEec
Confidence 999999999986544443332 23457888999887777655554 5789999987654332 24789999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeeeeecc-ccc-ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE
Q 008467 409 PTGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHS-KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY 486 (564)
Q Consensus 409 ~~~~~las~s~dg~i~iwd~~~~~~~~~~~-~~~-~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 486 (564)
+.+++.+|+|.||.|+|||--+.+|+.++. +|. ..|.+..|..++. ++++.++|..|++|.+.+++++.
T Consensus 271 ~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k---------yiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 271 STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK---------YILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe---------EEeecCCcceeeeeeecCCceEE
Confidence 999999999999999999999999988875 454 4688889988775 78899999999999999999998
Q ss_pred EEeCCC-----CCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEE--ecCCCEEEEEEccCCCEEEEEEcCCcEE
Q 008467 487 SLNGHR-----EPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGKIVKTY--TGNGGIFEVCWNKEGDKIAACFANHTVC 558 (564)
Q Consensus 487 ~~~~h~-----~~i~~~~~spdg~~lasgs-~dg~i~iw~~~~~~~~~~~--~~~~~i~~~~w~~~g~~la~~~~~~~v~ 558 (564)
+..|-. .--+...|+....|+..-. ..+.+.-||.+++..+..+ .+++.+..+.-+|.+--+.+|+.|-+.+
T Consensus 342 ~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raR 421 (430)
T KOG0640|consen 342 EYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRAR 421 (430)
T ss_pred EEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceee
Confidence 887642 1234566887777776543 3467999999988655443 4566788899999999999999999999
Q ss_pred EEEe
Q 008467 559 VLDF 562 (564)
Q Consensus 559 v~~~ 562 (564)
+|-=
T Consensus 422 FWyr 425 (430)
T KOG0640|consen 422 FWYR 425 (430)
T ss_pred eeee
Confidence 8853
No 108
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=4.5e-26 Score=215.10 Aligned_cols=284 Identities=19% Similarity=0.376 Sum_probs=233.0
Q ss_pred CCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEE
Q 008467 214 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 293 (564)
Q Consensus 214 ~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg 293 (564)
.|-.-|.++..|...++++||+ .|.|+|||+...... .|+..+.. .....-|.++...|||+.|++|
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k-----~PvsqLdc-------l~rdnyiRSckL~pdgrtLivG 483 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNK-----SPVSQLDC-------LNRDNYIRSCKLLPDGRTLIVG 483 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCC-----Cccccccc-------cCcccceeeeEecCCCceEEec
Confidence 5777788899999999999986 588999999653211 11111111 1123568899999999999999
Q ss_pred eCCCeEEEEECCC---ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCc
Q 008467 294 SYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 370 (564)
Q Consensus 294 ~~dg~i~vw~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (564)
++-.++.|||+.. .++..+....-..++|+.+||.+..+++..||.|.|||+....
T Consensus 484 GeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~--------------------- 542 (705)
T KOG0639|consen 484 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT--------------------- 542 (705)
T ss_pred cccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce---------------------
Confidence 9999999999753 3344455444567889999999999999999999999997643
Q ss_pred eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEc
Q 008467 371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS 450 (564)
Q Consensus 371 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~ 450 (564)
.++.|.||...+.||.+++||..|-||+-|.++|.||+++++.+... .....|.++.++
T Consensus 543 --------------------~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh-dF~SQIfSLg~c 601 (705)
T KOG0639|consen 543 --------------------LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLGYC 601 (705)
T ss_pred --------------------eeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh-hhhhhheecccC
Confidence 35678899999999999999999999999999999999988765432 234679999999
Q ss_pred cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 008467 451 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 530 (564)
Q Consensus 451 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~ 530 (564)
|.+. +|+.|-.++.+.|-... +...+.+.-|..-|.++.|++.|+|+++.+.|..+..|...-|..+...
T Consensus 602 P~~d---------WlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs 671 (705)
T KOG0639|consen 602 PTGD---------WLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 671 (705)
T ss_pred CCcc---------ceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec
Confidence 9876 78999999999888775 4556777789999999999999999999999999999999999877777
Q ss_pred ecCCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 531 TGNGGIFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 531 ~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
.....|.+...+.|.+++++|++++.-.||.+
T Consensus 672 kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 672 KESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 77788999999999999999999988888865
No 109
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=6.2e-26 Score=212.76 Aligned_cols=248 Identities=27% Similarity=0.513 Sum_probs=198.7
Q ss_pred cCCCCeEEEEECCC-CCEEEEEeCCCeEEEEECCC-----------ceeEeecCCCCCEEEEEeCCCCC-EEEEeeCCCc
Q 008467 273 EKSKDVTTLDWNGE-GTLLATGSYDGQARIWSTNG-----------DLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKT 339 (564)
Q Consensus 273 ~~~~~V~~l~~s~~-g~~l~sg~~dg~i~vw~~~~-----------~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~ 339 (564)
.|.+.|..+..-|. ..++|+++..+.+.|||... ....++.+|...-++|.|++... +|++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 35667888888885 46778888999999999532 12237889999889999998654 6899999999
Q ss_pred EEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCC-CEEEEEe
Q 008467 340 AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCS 418 (564)
Q Consensus 340 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~las~s 418 (564)
|++||+...... . ....+...|.+|...|..++|++-. .+|++++
T Consensus 202 i~lwdi~~~~~~-------~---------------------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~ 247 (422)
T KOG0264|consen 202 ICLWDINAESKE-------D---------------------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG 247 (422)
T ss_pred EEEEeccccccC-------C---------------------------ccccceEEeecCCcceehhhccccchhhheeec
Confidence 999998753211 0 0123566789999999999999854 6789999
Q ss_pred CCCcEEEEeCC--CCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEEeCCCCCE
Q 008467 419 DDVTAKIWNMK--QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPV 495 (564)
Q Consensus 419 ~dg~i~iwd~~--~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i 495 (564)
+|+.+.|||++ +.++.+...+|.++|.|++|+|.+. .+||+||.|++|++||+|+- ++++++.+|...|
T Consensus 248 dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~--------~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev 319 (422)
T KOG0264|consen 248 DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNE--------FILATGSADKTVALWDLRNLNKPLHTFEGHEDEV 319 (422)
T ss_pred CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCC--------ceEEeccCCCcEEEeechhcccCceeccCCCcce
Confidence 99999999999 5667778889999999999999763 58999999999999999974 5688999999999
Q ss_pred EEEEEcCCC-CEEEEEeCCCcEEEEeCCCCe--------------EEEEEecC-CCEEEEEEccCCC-EEEEEEcCCcEE
Q 008467 496 YSLAFSPTG-EYLASGSLDKSMHIWSLKEGK--------------IVKTYTGN-GGIFEVCWNKEGD-KIAACFANHTVC 558 (564)
Q Consensus 496 ~~~~~spdg-~~lasgs~dg~i~iw~~~~~~--------------~~~~~~~~-~~i~~~~w~~~g~-~la~~~~~~~v~ 558 (564)
.+|.|||.. ..||+++.|+++.|||+..-. ++-...|+ ..|.+++|+|.-- .|++...|+.+.
T Consensus 320 ~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~Lq 399 (422)
T KOG0264|consen 320 FQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQ 399 (422)
T ss_pred EEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEE
Confidence 999999975 788999999999999986432 12222232 3589999999876 556667788999
Q ss_pred EEEe
Q 008467 559 VLDF 562 (564)
Q Consensus 559 v~~~ 562 (564)
||..
T Consensus 400 IW~~ 403 (422)
T KOG0264|consen 400 IWQM 403 (422)
T ss_pred Eeec
Confidence 9964
No 110
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=5.1e-26 Score=215.60 Aligned_cols=252 Identities=23% Similarity=0.405 Sum_probs=189.1
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCce------eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC
Q 008467 273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL------KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK 346 (564)
Q Consensus 273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~------~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~ 346 (564)
.+++.|+++++.|.|-.|++|+.|-.|++||..|.- ..........|.+++|++.|..|++.+.....+|+|-.
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd 244 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD 244 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccC
Confidence 356789999999999999999999999999987631 12233455689999999999999999999999999965
Q ss_pred CcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC-EEEEEeCCCcEEE
Q 008467 347 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKI 425 (564)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~las~s~dg~i~i 425 (564)
..++..... +|.+| -+ +..-+||...++|.+|+|+.+ .++||+.||++||
T Consensus 245 G~~~~e~~K---------------------GDQYI--~D------m~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRi 295 (641)
T KOG0772|consen 245 GFEIVEFSK---------------------GDQYI--RD------MYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRI 295 (641)
T ss_pred Cceeeeeec---------------------cchhh--hh------hhccCCceeeeeccccccCcccceEEecCCCcEEE
Confidence 544332211 11111 11 123468999999999999864 5889999999999
Q ss_pred EeCCCCee-eeecc-----cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE---EEEEeCCCC--C
Q 008467 426 WNMKQDKY-VHDLR-----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL---LYSLNGHRE--P 494 (564)
Q Consensus 426 wd~~~~~~-~~~~~-----~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~h~~--~ 494 (564)
||+...+. ...|+ +..-++++.+|+|++. ++|+|..||.|.+|+..+... .+.-.+|.. .
T Consensus 296 Wdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~---------~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~ 366 (641)
T KOG0772|consen 296 WDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK---------LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQD 366 (641)
T ss_pred EecCCchhheeEEeeccCCCcccCceeeecCCCcc---------hhhhcccCCceeeeecCCcccccceEeeeccCCCCc
Confidence 99875432 22222 1223578899999986 689999999999999764321 233456776 8
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEec---CCCEEEEEEccCCCEEEEEEc------CCcEEEEEe
Q 008467 495 VYSLAFSPTGEYLASGSLDKSMHIWSLKEGK-IVKTYTG---NGGIFEVCWNKEGDKIAACFA------NHTVCVLDF 562 (564)
Q Consensus 495 i~~~~~spdg~~lasgs~dg~i~iw~~~~~~-~~~~~~~---~~~i~~~~w~~~g~~la~~~~------~~~v~v~~~ 562 (564)
|+||+||+||++|++-|.|+++++||++.-+ .+..+.+ .-.-+++||||+.+.|++|.. -|.+++||-
T Consensus 367 Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~ 444 (641)
T KOG0772|consen 367 ITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR 444 (641)
T ss_pred eeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEec
Confidence 9999999999999999999999999998753 4444443 223468999999999998854 245777763
No 111
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.1e-24 Score=220.08 Aligned_cols=270 Identities=23% Similarity=0.385 Sum_probs=217.4
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc--eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCccee
Q 008467 274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 351 (564)
Q Consensus 274 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 351 (564)
|...-+.++|.|+|++|.+++.||.|++|+.... ...++..+...|.+++-. +++|++|+.+++|.+|....++..
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCcc
Confidence 3456899999999999999999999999986543 223344488888888754 459999999999999998877655
Q ss_pred EEEeecccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008467 352 QQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 430 (564)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~ 430 (564)
..+..-.-++.++.+..+ ..++.++.|-.|.+.+.......+.+++|.++|.++.|+|.+++||+.+-||.|+||++.+
T Consensus 90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD 169 (933)
T ss_pred ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc
Confidence 444444556677777544 5678888999999999999889999999999999999999999999999999999999998
Q ss_pred Ceeeeecccc--------cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC--CCCCEEEEEE
Q 008467 431 DKYVHDLREH--------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAF 500 (564)
Q Consensus 431 ~~~~~~~~~~--------~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~i~~~~~ 500 (564)
+.+.+++..- ...+..++|+|.+. .|+..+.|++|++|+.......+.+.. +...+..+.|
T Consensus 170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g---------~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~w 240 (933)
T KOG1274|consen 170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGG---------TLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQW 240 (933)
T ss_pred chhhhhcccCCccccccccceeeeeeecCCCC---------eEEeeccCCeEEEEccCCceeheeecccccccceEEEEE
Confidence 8776555421 34567789999864 467777899999999999888887753 4445899999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcE
Q 008467 501 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTV 557 (564)
Q Consensus 501 spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v 557 (564)
||.|+|||+++.||.|.|||+++... ......|++++|.|+++.+-.-...|..
T Consensus 241 sPnG~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~ 294 (933)
T KOG1274|consen 241 SPNGKYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTL 294 (933)
T ss_pred cCCCcEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeecccc
Confidence 99999999999999999999997322 2223469999999999877655555443
No 112
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1.3e-23 Score=198.84 Aligned_cols=325 Identities=19% Similarity=0.293 Sum_probs=246.4
Q ss_pred ceeEccCCccceEEEEECCCCCEEEEEECCC--------cEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeE
Q 008467 208 DVTILEGHTSEVCACAWSPAGSLLASGSGDS--------TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT 279 (564)
Q Consensus 208 ~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~--------~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 279 (564)
..+.+.||+..|.|++.||+.-.+|+|-.-| .+||||..+-. ...++. .-...|+
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~----------TL~V~g-------~f~~GV~ 158 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLS----------TLHVIG-------FFDRGVT 158 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccce----------eeeeec-------cccccce
Confidence 3456679999999999999999999886655 48999843211 111221 2246799
Q ss_pred EEEECC--CCCEEEEE--eCCCeEEEEECCCc-eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467 280 TLDWNG--EGTLLATG--SYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 354 (564)
Q Consensus 280 ~l~~s~--~g~~l~sg--~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 354 (564)
|++||+ .|.++..- +.+..+.||+-..+ ........+..|....|+|.+..++.....+.+.+|+++++.+.+..
T Consensus 159 ~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~ 238 (626)
T KOG2106|consen 159 CVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQ 238 (626)
T ss_pred eeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEe
Confidence 999998 34555443 33457889986533 22234445677899999998877776667789999999988776543
Q ss_pred ---eec-ccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008467 355 ---EFH-SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 430 (564)
Q Consensus 355 ---~~~-~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~ 430 (564)
+.+ ..-++++.|..+...+++..+|.|.+|+.+..+..+....|.+.|-+++.-.+|.+| ||+.|..|..||-.-
T Consensus 239 ~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y 317 (626)
T KOG2106|consen 239 GIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNY 317 (626)
T ss_pred eccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccc
Confidence 222 245889999999999999999999999998887776666999999999999999876 599999999998321
Q ss_pred Ce-----------eeee-----------------------------cccccccEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008467 431 DK-----------YVHD-----------------------------LREHSKEIYTIRWSPTGSGTNNPNQQLILASASF 470 (564)
Q Consensus 431 ~~-----------~~~~-----------------------------~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~ 470 (564)
.+ .+++ ..+|......++-.|.. ..+++++.
T Consensus 318 ~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~---------~q~~T~gq 388 (626)
T KOG2106|consen 318 RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK---------NQLLTCGQ 388 (626)
T ss_pred cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh---------hheeeccC
Confidence 11 0111 11233333444444432 25889999
Q ss_pred CCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEE
Q 008467 471 DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAA 550 (564)
Q Consensus 471 dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~ 550 (564)
|+.+++|+ ..++.++.. -..++.++.|+|.| .+|.|+..|...+.|.++..++..-..+..+..+.++|+|.+||+
T Consensus 389 dk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAv 464 (626)
T KOG2106|consen 389 DKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAV 464 (626)
T ss_pred cceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEE
Confidence 99999999 456666654 35689999999999 999999999999999999888887777888999999999999999
Q ss_pred EEcCCcEEEEEee
Q 008467 551 CFANHTVCVLDFR 563 (564)
Q Consensus 551 ~~~~~~v~v~~~~ 563 (564)
|+.|+.|.||-+.
T Consensus 465 gs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 465 GSHDNHIYIYRVS 477 (626)
T ss_pred ecCCCeEEEEEEC
Confidence 9999999998663
No 113
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=4.2e-25 Score=195.60 Aligned_cols=298 Identities=20% Similarity=0.371 Sum_probs=227.5
Q ss_pred eEccCCccceEEEEECCC-CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEe----eccccccCCCCeEEEEEC
Q 008467 210 TILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKH----VKGRTNEKSKDVTTLDWN 284 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~-~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~V~~l~~s 284 (564)
.+.+.|.+.|+++...|. |+++++|+.||.|.+||+++....... .+..++ .+.+.+.|...|+++.|-
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s------~li~k~~c~v~~~h~~~Hky~iss~~Wy 110 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS------GLIAKHKCIVAKQHENGHKYAISSAIWY 110 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhc------cceeheeeeccccCCccceeeeeeeEEe
Confidence 345679999999999995 899999999999999999865421110 011111 234556777889999999
Q ss_pred C-CCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCC---CEEEEeeCCCcEEEEECCCcceeEEEeecccC
Q 008467 285 G-EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG---DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP 360 (564)
Q Consensus 285 ~-~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~---~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~ 360 (564)
| |.-++.+++.|.+++|||++.-....--...+.|++-+|+|-. ..+++|..|-.|++-|+.+|.+...+..|.+.
T Consensus 111 P~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~ 190 (397)
T KOG4283|consen 111 PIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG 190 (397)
T ss_pred eecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc
Confidence 9 6668889999999999999876555444567889999999854 35677788889999999999999999999999
Q ss_pred eEEEEcCCCc--eEEEEeCCCeEEEEEcCCC-cee--------------eEecCCCcceEEEEECCCCCEEEEEeCCCcE
Q 008467 361 TLDVDWRNNV--SFATSSTDNMIYVCKIGEN-RPI--------------KTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 423 (564)
Q Consensus 361 ~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~-~~~--------------~~~~~h~~~i~~v~~~~~~~~las~s~dg~i 423 (564)
++.+.|.+.. .+++++.|+.|++||++.. .+. ++-..|.+.|+.++|..++.++++++.|..+
T Consensus 191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~ 270 (397)
T KOG4283|consen 191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRI 270 (397)
T ss_pred eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccce
Confidence 9999997654 5678999999999998643 111 2234678899999999999999999999999
Q ss_pred EEEeCCCCeee-eecc--cccccEEEEEEcc-CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEE
Q 008467 424 KIWNMKQDKYV-HDLR--EHSKEIYTIRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA 499 (564)
Q Consensus 424 ~iwd~~~~~~~-~~~~--~~~~~i~~i~~~p-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~ 499 (564)
++|+..+++.. ..+- -|.+. ..+++.- .+. .-.++---.++.+.++++-.+..+..+..|...|.+.+
T Consensus 271 r~wn~~~G~ntl~~~g~~~~n~~-~~~~~~~~~~~-------s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~ 342 (397)
T KOG4283|consen 271 RVWNMESGRNTLREFGPIIHNQT-TSFAVHIQSMD-------SDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAA 342 (397)
T ss_pred EEeecccCccccccccccccccc-ccceEEEeecc-------cceEEEEecCCeEEEEEccCceEEEeeecccceeeEEe
Confidence 99998776532 1110 01111 1111110 000 01233333458999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeC
Q 008467 500 FSPTGEYLASGSLDKSMHIWSL 521 (564)
Q Consensus 500 ~spdg~~lasgs~dg~i~iw~~ 521 (564)
|-|+=+-+.+|+.|+.|..|..
T Consensus 343 ~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 343 YRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ecCchhhhhccccCCccccccc
Confidence 9999999999999999999987
No 114
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8.8e-26 Score=227.09 Aligned_cols=242 Identities=20% Similarity=0.347 Sum_probs=179.1
Q ss_pred eec-CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCe----------EEEEcCC------CceEE
Q 008467 311 TLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT----------LDVDWRN------NVSFA 373 (564)
Q Consensus 311 ~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~----------~~~~~~~------~~~~~ 373 (564)
.+. .|.++|++++|+++|+||++|+.|+.|+||.+...+....-......+ ..+.... ....-
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 345 899999999999999999999999999999876533211000000000 0000000 00000
Q ss_pred EEeCCCeEEEEE---cCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEc
Q 008467 374 TSSTDNMIYVCK---IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS 450 (564)
Q Consensus 374 ~~~~d~~i~~~~---~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~ 450 (564)
.+.....+.+-. .-..+|+..|.||.+.|..+.|+.+ .+|+|+|.|.+||+|++....++..|. |..-|+||+|.
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFn 418 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFN 418 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEec
Confidence 001111111100 1135788999999999999999964 678899999999999999999998874 99999999999
Q ss_pred cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 008467 451 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 530 (564)
Q Consensus 451 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~ 530 (564)
|... .+++|||.||.||||++...+.+.-.. -..-|++++|+|||++.+.|+.+|.+++|++...++...+
T Consensus 419 PvDD--------ryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 419 PVDD--------RYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred ccCC--------CcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence 8653 489999999999999998777664444 3478999999999999999999999999999988877665
Q ss_pred ec---------CCCEEEEEEccCC-CEEEEEEcCCcEEEEEee
Q 008467 531 TG---------NGGIFEVCWNKEG-DKIAACFANHTVCVLDFR 563 (564)
Q Consensus 531 ~~---------~~~i~~~~w~~~g-~~la~~~~~~~v~v~~~~ 563 (564)
.- +..|+.+.+.|.. +.|.+.+.|..|+|||.|
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~ 532 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGR 532 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEecc
Confidence 31 2369999999754 568888899999999984
No 115
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.6e-24 Score=193.35 Aligned_cols=279 Identities=23% Similarity=0.392 Sum_probs=202.1
Q ss_pred EccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC--CCC
Q 008467 211 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EGT 288 (564)
Q Consensus 211 ~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g~ 288 (564)
+-.+|.+-|+++.|.+-|+.+|||+.|++++|||........ .+...-..|.+.|..+.|-+ =|+
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W-------------~~Ts~Wrah~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTW-------------SCTSSWRAHDGSIWRVVWAHPEFGQ 74 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCce-------------EEeeeEEecCCcEEEEEecCccccc
Confidence 345799999999999999999999999999999975433211 11111223567899999976 489
Q ss_pred EEEEEeCCCeEEEEECC-------C---ceeEeecCCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCcceeEEEee
Q 008467 289 LLATGSYDGQARIWSTN-------G---DLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEF 356 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~-------~---~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 356 (564)
.+|++++|++++||... + ...+++....+.|+.++|.|. |-.|++++.||++|||+...---..
T Consensus 75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs---- 150 (361)
T KOG2445|consen 75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS---- 150 (361)
T ss_pred eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc----
Confidence 99999999999999752 1 133467778899999999985 5678999999999999864321111
Q ss_pred cccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCc--eeeEecCCCcceEEEEECCC---CCEEEEEeCC-----CcEEEE
Q 008467 357 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPT---GSLLASCSDD-----VTAKIW 426 (564)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~h~~~i~~v~~~~~---~~~las~s~d-----g~i~iw 426 (564)
.|.+.... .+.....+.....|+.|+|. ..+||.|+++ +.++||
T Consensus 151 --------------------------~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iy 204 (361)
T KOG2445|consen 151 --------------------------QWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIY 204 (361)
T ss_pred --------------------------cchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEE
Confidence 12111100 01112234556779999974 3678888876 478888
Q ss_pred eCCCC----eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--------------------
Q 008467 427 NMKQD----KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-------------------- 482 (564)
Q Consensus 427 d~~~~----~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-------------------- 482 (564)
..... ..+.++..|..+|+.|+|.|.-.. ...+||+++.|| |+||++...
T Consensus 205 e~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr-----~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v 278 (361)
T KOG2445|consen 205 EYNENGRKWLKVAELPDHTDPIRDISWAPNIGR-----SYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPV 278 (361)
T ss_pred EecCCcceeeeehhcCCCCCcceeeeeccccCC-----ceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccce
Confidence 76433 235677899999999999997432 235899999999 999998631
Q ss_pred eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC---CeEEEEEecCCCEEE
Q 008467 483 KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE---GKIVKTYTGNGGIFE 538 (564)
Q Consensus 483 ~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~---~~~~~~~~~~~~i~~ 538 (564)
+.+..+.+|...|..+.|+-.|..|++.|.||.|++|...- .++...+...+.+..
T Consensus 279 ~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~ 337 (361)
T KOG2445|consen 279 EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTK 337 (361)
T ss_pred EEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCCCCC
Confidence 23455788999999999999999999999999999998642 234444444443333
No 116
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.8e-25 Score=215.49 Aligned_cols=291 Identities=24% Similarity=0.376 Sum_probs=232.6
Q ss_pred eeecCCceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEE
Q 008467 202 FEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL 281 (564)
Q Consensus 202 ~~~~~~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 281 (564)
..+|.....+++||++.|.|++..|.|.+||+|+.||++|||.+.+|.+.. ++. -...|.|+
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr-------------~~~-----~d~~I~~v 447 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVR-------------TVQ-----FDSEIRSV 447 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEE-------------EEe-----ecceeEEE
Confidence 346677778899999999999999999999999999999999999886532 211 12469999
Q ss_pred EECCCCC--EEEEEeCCC--------------------------------eEEEEECCC-----ceeEeecCCCCCEEEE
Q 008467 282 DWNGEGT--LLATGSYDG--------------------------------QARIWSTNG-----DLKCTLSKHKGPIFSL 322 (564)
Q Consensus 282 ~~s~~g~--~l~sg~~dg--------------------------------~i~vw~~~~-----~~~~~~~~h~~~V~~l 322 (564)
+|+|.+. .||++.... .+..|.... .-++....|..+|..+
T Consensus 448 aw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~v 527 (733)
T KOG0650|consen 448 AWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQV 527 (733)
T ss_pred EecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCcccee
Confidence 9999764 344443322 223343210 0123445688999999
Q ss_pred EeCCCCCEEEEeeCC---CcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCC
Q 008467 323 KWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ 399 (564)
Q Consensus 323 ~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~ 399 (564)
.|+..|.||++...+ ..|.|+++........|....+.+..+.|++...+....+...|++|++.....++.+....
T Consensus 528 tWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~ 607 (733)
T KOG0650|consen 528 TWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGS 607 (733)
T ss_pred eeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCC
Confidence 999999999988765 57999999887777777778888999999988777777788899999998877777777777
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEeCCC-CeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEe
Q 008467 400 GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ-DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWD 478 (564)
Q Consensus 400 ~~i~~v~~~~~~~~las~s~dg~i~iwd~~~-~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd 478 (564)
..|..++.+|.|.-|+.|+.|+.+..+|+.- .++.+.++.|...+++++|++.-. ++++|+.||++.|+.
T Consensus 608 kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP---------Lfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP---------LFASGSDDGTVIVFH 678 (733)
T ss_pred eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccc---------eeeeecCCCcEEEEe
Confidence 7899999999999999999999999999864 456788899999999999988654 899999999999985
Q ss_pred CC-------C--CeEEEEEeCCCCC----EEEEEEcCCCCEEEEEeCCCcEEEE
Q 008467 479 VE-------L--GKLLYSLNGHREP----VYSLAFSPTGEYLASGSLDKSMHIW 519 (564)
Q Consensus 479 ~~-------~--~~~~~~~~~h~~~----i~~~~~spdg~~lasgs~dg~i~iw 519 (564)
-. + --.+..+.+|... |..+.|+|...||.+++.||+|++|
T Consensus 679 g~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 679 GMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 32 1 1235667888654 8999999999999999999999998
No 117
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.3e-25 Score=198.03 Aligned_cols=273 Identities=26% Similarity=0.399 Sum_probs=212.9
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc-ce
Q 008467 273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EW 350 (564)
Q Consensus 273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~ 350 (564)
+|...|..++-...-..+.+++.|.+.+||..+ |.++..+.+|.+.|.+++|++.+..++++|.|++..||...-. +.
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~v 225 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEV 225 (481)
T ss_pred ccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcC
Confidence 445667777666666688999999999999975 6788899999999999999999999999999999999962100 00
Q ss_pred eEE--EeecccCeEEEEc-CCCceEEEE---eCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEE
Q 008467 351 KQQ--FEFHSGPTLDVDW-RNNVSFATS---STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 424 (564)
Q Consensus 351 ~~~--~~~~~~~~~~~~~-~~~~~~~~~---~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~ 424 (564)
.+. -..|.+. -.... ..+..+..+ +...+|+ .|+..|.||.+.|.+..|-..|+.++++|.|.+..
T Consensus 226 P~~~a~~~hSsE-eE~e~sDe~~~d~d~~~~sD~~tiR-------vPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 226 PSNNAPSDHSSE-EEEEHSDEHNRDTDSSEKSDGHTIR-------VPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred CCCCCCCCCCch-hhhhcccccccccccccccCCceee-------eeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence 000 0000000 00000 011111111 1112332 37788999999999999999999999999999999
Q ss_pred EEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEEEEeCCCCCEEEEEEcCC
Q 008467 425 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPT 503 (564)
Q Consensus 425 iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~i~~~~~spd 503 (564)
+||..++..++.+.+|..+.+.++-+|.. .+++++|.|.+.++||.+. -..+..+.||...|+++.|.-|
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstHptQ---------rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d 368 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTHPTQ---------RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD 368 (481)
T ss_pred eeeeccCceeccccCcchhccccccCCcc---------eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC
Confidence 99999999999999999988877766653 3788999999999999983 2456789999999999999865
Q ss_pred CCEEEEEeCCCcEEEEeCCCC-eEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 504 GEYLASGSLDKSMHIWSLKEG-KIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 504 g~~lasgs~dg~i~iw~~~~~-~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
..+++||.|.+|+|||+++. ..+.++....+++.++.+..+..+|.-..|..|++||+.
T Consensus 369 -d~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 369 -DRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred -CceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecC
Confidence 56889999999999999875 467888888899999999999999999999999999973
No 118
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=2.4e-23 Score=203.77 Aligned_cols=286 Identities=14% Similarity=0.130 Sum_probs=205.3
Q ss_pred CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECCC
Q 008467 228 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL-ATGSYDGQARIWSTNG 306 (564)
Q Consensus 228 ~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l-~sg~~dg~i~vw~~~~ 306 (564)
+.+++|++.|+.+++||+.++... ..... ...+.+++|+|+|..+ ++++.++.|++|+...
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~-------------~~~~~-----~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVT-------------RTFPV-----GQRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceE-------------EEEEC-----CCCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 357889999999999998765311 11111 1235679999999876 5677889999999764
Q ss_pred -ceeEeecCCCCCEEEEEeCCCCCEEEE-eeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCc-eEEEEeCC-CeEE
Q 008467 307 -DLKCTLSKHKGPIFSLKWNKKGDYLLT-GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFATSSTD-NMIY 382 (564)
Q Consensus 307 -~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d-~~i~ 382 (564)
.....+..+.. +..+.|+|+++.+++ ++.|+.+++||+.+...+..+... ..+..+.|.++. .++++..+ ..++
T Consensus 63 ~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~ 140 (300)
T TIGR03866 63 GEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAH 140 (300)
T ss_pred CcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEE
Confidence 44444554444 467899999997765 456899999999987766665432 234556675543 45555544 3567
Q ss_pred EEEcCCCceeeEecCCCcceEEEEECCCCCEEE-EEeCCCcEEEEeCCCCeeeeecccccc-------cEEEEEEccCCC
Q 008467 383 VCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDKYVHDLREHSK-------EIYTIRWSPTGS 454 (564)
Q Consensus 383 ~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~-------~i~~i~~~p~~~ 454 (564)
.|+......+..... ...+.+++|+|++++|+ ++..++.|++||+.+++.+..+..+.. ....+.|+|++.
T Consensus 141 ~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~ 219 (300)
T TIGR03866 141 FIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGK 219 (300)
T ss_pred EEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCC
Confidence 778877665544332 23457899999999875 455699999999998877665542211 124577887764
Q ss_pred CCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEEEEecC
Q 008467 455 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTYTGN 533 (564)
Q Consensus 455 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasg-s~dg~i~iw~~~~~~~~~~~~~~ 533 (564)
.++++.+.++.|.+||+++++.+..+. +...+.+++|+|+|++|+++ +.+|.|.+||+.+++++..+...
T Consensus 220 --------~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 220 --------TAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred --------EEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence 344555567789999999888776553 34578999999999999876 46899999999999999998877
Q ss_pred CCEEEEEEcc
Q 008467 534 GGIFEVCWNK 543 (564)
Q Consensus 534 ~~i~~~~w~~ 543 (564)
.+.++++++|
T Consensus 291 ~~~~~~~~~~ 300 (300)
T TIGR03866 291 RLPWGVVVRP 300 (300)
T ss_pred cccceeEeCC
Confidence 7788888875
No 119
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.7e-24 Score=193.85 Aligned_cols=277 Identities=18% Similarity=0.284 Sum_probs=201.3
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCcee---Eee--cCCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECC
Q 008467 273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK---CTL--SKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVK 346 (564)
Q Consensus 273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~---~~~--~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~ 346 (564)
+|.+.|++++|++||++|+|++.|+.||+|++..-.. ..+ ...-+--+.+.|.||.+-++ ++-...++++|-+.
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~ 163 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV 163 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence 4578899999999999999999999999999753111 001 11112347789999987654 55566689999753
Q ss_pred C---cceeEE---------EeecccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCE
Q 008467 347 T---EEWKQQ---------FEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL 413 (564)
Q Consensus 347 ~---~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~ 413 (564)
. |..... -..|..+++++...++ ..+++++.|..|.+|+++ ++.+.........-...+.||+|++
T Consensus 164 K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRF 242 (420)
T KOG2096|consen 164 KKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRF 242 (420)
T ss_pred ecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcE
Confidence 2 221111 1123445666665555 456788999999999998 6766666655556667889999999
Q ss_pred EEEEeCCCcEEEEeCC---CC-----eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC----
Q 008467 414 LASCSDDVTAKIWNMK---QD-----KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL---- 481 (564)
Q Consensus 414 las~s~dg~i~iwd~~---~~-----~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~---- 481 (564)
||+++..--+++|..- .+ ..+..+++|...|..++|+|+.. .+++.|.||++||||+.-
T Consensus 243 ia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~---------r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 243 IAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST---------RAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred EEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc---------eeEEEecCCcEEEeeccceEec
Confidence 9999999999999852 22 23567889999999999999764 689999999999999753
Q ss_pred CeEEEEEe-------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec--CCCEEEEEEccCCCEEEEEE
Q 008467 482 GKLLYSLN-------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAACF 552 (564)
Q Consensus 482 ~~~~~~~~-------~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~--~~~i~~~~w~~~g~~la~~~ 552 (564)
++-.+.++ .-...-..++.||.|+.||.+. ...+++|..++|+....+.. .+.|.+++|+++|+++|+|
T Consensus 314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atc- 391 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATC- 391 (420)
T ss_pred CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeee-
Confidence 11111111 1122234899999999998654 44699999999987666543 4679999999999999999
Q ss_pred cCCcEEEEE
Q 008467 553 ANHTVCVLD 561 (564)
Q Consensus 553 ~~~~v~v~~ 561 (564)
+|..+.|+.
T Consensus 392 Gdr~vrv~~ 400 (420)
T KOG2096|consen 392 GDRYVRVIR 400 (420)
T ss_pred cceeeeeec
Confidence 566787763
No 120
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2e-24 Score=193.30 Aligned_cols=260 Identities=17% Similarity=0.348 Sum_probs=207.5
Q ss_pred EEEEeCCCeEEEEECCCc-------------eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee
Q 008467 290 LATGSYDGQARIWSTNGD-------------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 356 (564)
Q Consensus 290 l~sg~~dg~i~vw~~~~~-------------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 356 (564)
|+.|++...|.-++..-. ....+..|.++|++++.+ +.++++||.|-+|+|||+++......+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec
Confidence 566777666665553211 123467899999999875 78999999999999999999888888888
Q ss_pred cccCeEEEEcCCCc---eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 008467 357 HSGPTLDVDWRNNV---SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 433 (564)
Q Consensus 357 ~~~~~~~~~~~~~~---~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~ 433 (564)
|.+.+.++.|.... .+++++.||.|.+|+.+.-..+..+++|.+.|+.++++|.+++-++.+.|+.+++||+-.++.
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 99999998886655 799999999999999999999999999999999999999999999999999999999987765
Q ss_pred eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC
Q 008467 434 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 513 (564)
Q Consensus 434 ~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d 513 (564)
...++- ...-+.+.|+|.|. .++.++. ..|-||.+.+.+....+... ..+.++.|- ++.+|++|+.|
T Consensus 162 a~v~~L-~~~at~v~w~~~Gd---------~F~v~~~-~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~ 228 (362)
T KOG0294|consen 162 AFVLNL-KNKATLVSWSPQGD---------HFVVSGR-NKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDN 228 (362)
T ss_pred ceeecc-CCcceeeEEcCCCC---------EEEEEec-cEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCC
Confidence 433321 12234599999875 3444443 46899998876655444322 346777774 67889999999
Q ss_pred CcEEEEeCCCCeEEEEEecCC-CEEEEE--EccCCCEEEEEEcCCcEEEEEeeC
Q 008467 514 KSMHIWSLKEGKIVKTYTGNG-GIFEVC--WNKEGDKIAACFANHTVCVLDFRM 564 (564)
Q Consensus 514 g~i~iw~~~~~~~~~~~~~~~-~i~~~~--w~~~g~~la~~~~~~~v~v~~~~~ 564 (564)
+.|.+||..++.....+.++. .|-++. =+|++.+|+++++||.|+|||++|
T Consensus 229 ~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 229 EWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred ceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 999999999988887776653 466655 377899999999999999999986
No 121
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=2.8e-25 Score=217.85 Aligned_cols=285 Identities=23% Similarity=0.350 Sum_probs=223.1
Q ss_pred EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEE--------------------eeccccccCCCCeEEEEECCCCCE
Q 008467 230 LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLK--------------------HVKGRTNEKSKDVTTLDWNGEGTL 289 (564)
Q Consensus 230 ~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~V~~l~~s~~g~~ 289 (564)
-+.|++.|++||+|++..+.........++....++ +.....-.....|.+++.||+|++
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 488999999999999976433221111110000000 000001112346999999999999
Q ss_pred EEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCC---CCEEEEeeCCCcEEEEECC-CcceeEEEeecccCeEEE
Q 008467 290 LATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKK---GDYLLTGSCDKTAIVWDVK-TEEWKQQFEFHSGPTLDV 364 (564)
Q Consensus 290 l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~---~~~l~s~s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~ 364 (564)
||+|..-|++|||++.. ...+.+..|...|.||.|+.- .+.|++++.|+-|.|+|+. .-.+++++..|...+..+
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsv 553 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSV 553 (1080)
T ss_pred ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEE
Confidence 99999999999999754 456678899999999999852 4678999999999999985 445677888999999999
Q ss_pred EcCC---CceEEEEeCCCeEEEEEcCCCceeeEecCCC-----cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeee
Q 008467 365 DWRN---NVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-----GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 436 (564)
Q Consensus 365 ~~~~---~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-----~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~ 436 (564)
.|.. +...++|+.|..|++-..........|..|. ..+..++..|..+++++++.|..|+||++.+++.++.
T Consensus 554 KFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~ 633 (1080)
T KOG1408|consen 554 KFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKS 633 (1080)
T ss_pred EEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeee
Confidence 8853 3577899999988654433322233344333 3577899999999999999999999999999999999
Q ss_pred ccc---ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC
Q 008467 437 LRE---HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 513 (564)
Q Consensus 437 ~~~---~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d 513 (564)
|++ |.+....+...|.|. +|++...|.++.++|..+|+++..+.||...|+.+.|++|.+.|++.+.|
T Consensus 634 FKgs~~~eG~lIKv~lDPSgi---------Y~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgD 704 (1080)
T KOG1408|consen 634 FKGSRDHEGDLIKVILDPSGI---------YLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGD 704 (1080)
T ss_pred ecccccCCCceEEEEECCCcc---------EEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCC
Confidence 875 556677778888774 89999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCC
Q 008467 514 KSMHIWSLKE 523 (564)
Q Consensus 514 g~i~iw~~~~ 523 (564)
|.|.||.+..
T Consensus 705 gCIFvW~lp~ 714 (1080)
T KOG1408|consen 705 GCIFVWKLPL 714 (1080)
T ss_pred ceEEEEECch
Confidence 9999999864
No 122
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.1e-25 Score=223.13 Aligned_cols=288 Identities=23% Similarity=0.389 Sum_probs=220.5
Q ss_pred ceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-CCCEEEEEeCC
Q 008467 218 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLATGSYD 296 (564)
Q Consensus 218 ~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~l~sg~~d 296 (564)
...+++.+++-..++.+| -..++|+.+....... +.+ +..+...........+.|+. +.++|||++..
T Consensus 41 ~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~-----~~~-----~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~n 109 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAG-RSLLKLYAINPNDFSE-----KCN-----HRFKTKQNKFYSAADVKWGQLYSNLIATCSTN 109 (839)
T ss_pred ccceEeecCCcceeEEec-ccceeeEeeCcccCCc-----cee-----eecccccceeeehhhcccccchhhhheeecCC
Confidence 345677778866665554 4578888876432211 111 11011111123345677875 56899999999
Q ss_pred CeEEEEECCC----ceeEeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC--CC
Q 008467 297 GQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--NN 369 (564)
Q Consensus 297 g~i~vw~~~~----~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~ 369 (564)
|.|.+||++. .+...|..|+..|.++.|++.. ++|++||.||+|++||++..+-+.++......+.++.|. ..
T Consensus 110 G~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~ 189 (839)
T KOG0269|consen 110 GVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYG 189 (839)
T ss_pred CcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCC
Confidence 9999999875 3445788999999999999865 578999999999999999998888888888889899885 46
Q ss_pred ceEEEEeCCCeEEEEEcCCC-ceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee--eeecccccccEEE
Q 008467 370 VSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDLREHSKEIYT 446 (564)
Q Consensus 370 ~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~ 446 (564)
..|++....|.+..||++.. ++...|..|.++|.|+.|+|++.+||||+.|++|+|||+.+.+. .+++. -..++..
T Consensus 190 ~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~r 268 (839)
T KOG0269|consen 190 NKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGR 268 (839)
T ss_pred ceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeee
Confidence 78999999999999999864 56788999999999999999999999999999999999986543 22322 3467899
Q ss_pred EEEccCCCCCCCCCCcEEEEEEeC--CCeEEEEeCCCCe-EEEEEeCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCC
Q 008467 447 IRWSPTGSGTNNPNQQLILASASF--DSTVKLWDVELGK-LLYSLNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLK 522 (564)
Q Consensus 447 i~~~p~~~~~~~~~~~~~l~s~s~--dg~i~iwd~~~~~-~~~~~~~h~~~i~~~~~sp-dg~~lasgs~dg~i~iw~~~ 522 (564)
++|.|... ..||++++ |-.|+|||++..- +..++..|+..++.++|.. |-..|-+++.||+|..-.++
T Consensus 269 VkWRP~~~--------~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 269 VKWRPARS--------YHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred eeeccCcc--------chhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 99998754 46888775 7789999998543 3467888999999999965 45677899999988766665
Q ss_pred CCe
Q 008467 523 EGK 525 (564)
Q Consensus 523 ~~~ 525 (564)
++.
T Consensus 341 nat 343 (839)
T KOG0269|consen 341 NAT 343 (839)
T ss_pred ccc
Confidence 543
No 123
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.6e-24 Score=219.06 Aligned_cols=241 Identities=21% Similarity=0.359 Sum_probs=205.3
Q ss_pred cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc-ceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCce
Q 008467 313 SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP 391 (564)
Q Consensus 313 ~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 391 (564)
..|+..-+.|+|.|+|.+|++++.||.|++|+.... +-...+..+...+..+.-.. ..|++++.+++|.+|.+.++..
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s-~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS-NHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc-cceEEeeccceEEEeeCCCCCc
Confidence 368888999999999999999999999999987554 33333333445555554433 3899999999999999988776
Q ss_pred eeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008467 392 IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 471 (564)
Q Consensus 392 ~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d 471 (564)
-..+...+-++++++++.+|+++|.||+|-.|++-++........+++|.++|.++.|.|.+. +||+.+.|
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~---------fLAvss~d 159 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGN---------FLAVSSCD 159 (933)
T ss_pred cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCC---------EEEEEecC
Confidence 655666677899999999999999999999999999999988999999999999999999875 89999999
Q ss_pred CeEEEEeCCCCeEEEEEeCC--------CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC---CCEEEEE
Q 008467 472 STVKLWDVELGKLLYSLNGH--------REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN---GGIFEVC 540 (564)
Q Consensus 472 g~i~iwd~~~~~~~~~~~~h--------~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~---~~i~~~~ 540 (564)
|.|+|||+.++.+..++.+- ...+..++|+|+|..+|..+.|+.|++|+..++.+...+..+ ..+..++
T Consensus 160 G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~ 239 (933)
T KOG1274|consen 160 GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQ 239 (933)
T ss_pred ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEE
Confidence 99999999998887776532 345778999999888888889999999999999988877653 3488999
Q ss_pred EccCCCEEEEEEcCCcEEEEEee
Q 008467 541 WNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 541 w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
|+|-|++||+++.||.|.|||++
T Consensus 240 wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 240 WSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred EcCCCcEEeeeccCCcEEEEecc
Confidence 99999999999999999999986
No 124
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.8e-25 Score=216.23 Aligned_cols=231 Identities=24% Similarity=0.441 Sum_probs=198.0
Q ss_pred CCCCEEEEEeCCCeEEEEECCCc-------eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeec
Q 008467 285 GEGTLLATGSYDGQARIWSTNGD-------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 357 (564)
Q Consensus 285 ~~g~~l~sg~~dg~i~vw~~~~~-------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 357 (564)
|.+++|+|||.||.|++|+.... ....+..|..-|..+....+++.|+++|.|-+|++|+...+.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-------- 106 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-------- 106 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc--------
Confidence 46778999999999999986421 244677899989888888899999999999999999976531
Q ss_pred ccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEE-CCCCCEEEEEeCCCcEEEEeCCCCe--ee
Q 008467 358 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW-DPTGSLLASCSDDVTAKIWNMKQDK--YV 434 (564)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~-~~~~~~las~s~dg~i~iwd~~~~~--~~ 434 (564)
...+.++..|...|.|+++ -++..++|||+-|+.|.+||++++. .+
T Consensus 107 -------------------------------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~ 155 (735)
T KOG0308|consen 107 -------------------------------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLV 155 (735)
T ss_pred -------------------------------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhh
Confidence 0123456789999999999 7888999999999999999998762 22
Q ss_pred --------eecc-cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCC
Q 008467 435 --------HDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE 505 (564)
Q Consensus 435 --------~~~~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~ 505 (564)
..+. ++..+||+++-.+.|. ++++|+..+.+++||.++++.+..+.||+..|..+..++||+
T Consensus 156 ~s~n~~t~~sl~sG~k~siYSLA~N~t~t---------~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt 226 (735)
T KOG0308|consen 156 ASFNNVTVNSLGSGPKDSIYSLAMNQTGT---------IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT 226 (735)
T ss_pred hhccccccccCCCCCccceeeeecCCcce---------EEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCC
Confidence 2233 6778899999888774 799999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 506 YLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 506 ~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
.+++||.||+|++||+...+++.+|..+ .+++++.-+|+=+++-+|..+|.|..=|+|
T Consensus 227 ~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 227 RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLR 285 (735)
T ss_pred eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccC
Confidence 9999999999999999999999998754 468899999999999999999998877765
No 125
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=6.1e-23 Score=200.85 Aligned_cols=265 Identities=14% Similarity=0.157 Sum_probs=199.6
Q ss_pred CCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCcceeEEEeecccCeEEE
Q 008467 287 GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 364 (564)
Q Consensus 287 g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 364 (564)
+.++++++.||.+++|+.. +.....+..+.. +.++.|+|++..+ ++++.++.|++||+.+++....+..+.. ...+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~ 78 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF 78 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence 3578899999999999975 455566665544 5789999999876 5677889999999999887766654433 3345
Q ss_pred EcCCC--ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCC-cEEEEeCCCCeeeeeccccc
Q 008467 365 DWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV-TAKIWNMKQDKYVHDLREHS 441 (564)
Q Consensus 365 ~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg-~i~iwd~~~~~~~~~~~~~~ 441 (564)
.|.++ ..+++++.++.+++|++...+.+..+.. ...+.+++|+|+++++++++.++ .+.+||..++.....+.. .
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~ 156 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-D 156 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-C
Confidence 56544 3445666789999999988777766653 23467899999999999988875 467789988776554432 2
Q ss_pred ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC-------CCEEEEEEcCCCCEEEE-EeCC
Q 008467 442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-------EPVYSLAFSPTGEYLAS-GSLD 513 (564)
Q Consensus 442 ~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-------~~i~~~~~spdg~~las-gs~d 513 (564)
.....+.|+|++. .+++++..++.|++||+.+++.+..+..+. .....++|+|+|+++++ .+.+
T Consensus 157 ~~~~~~~~s~dg~--------~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~ 228 (300)
T TIGR03866 157 QRPRFAEFTADGK--------ELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA 228 (300)
T ss_pred CCccEEEECCCCC--------EEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC
Confidence 3456788988874 344666679999999999988776654321 12356899999998654 4556
Q ss_pred CcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEE-EcCCcEEEEEee
Q 008467 514 KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAAC-FANHTVCVLDFR 563 (564)
Q Consensus 514 g~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~-~~~~~v~v~~~~ 563 (564)
+.|.+||+++++++........+.+++|+|+|++|+++ ..++.|.|||++
T Consensus 229 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 229 NRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred CeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 78999999999888766556678999999999999876 458899999986
No 126
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.5e-26 Score=226.03 Aligned_cols=255 Identities=27% Similarity=0.499 Sum_probs=217.0
Q ss_pred CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 008467 227 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG 306 (564)
Q Consensus 227 ~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~ 306 (564)
-+..+..+..+..+++|+.... ..|+..|.++..-..++.+++|+.|..+-+|....
T Consensus 3 ~~~~~m~~~~~t~Lr~~~~~~~-----------------------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k 59 (825)
T KOG0267|consen 3 GMEFLMKTKRATKLRVWDTREF-----------------------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK 59 (825)
T ss_pred cccccceeeeeeccccccchhh-----------------------hhhhhhhceeeeeccceeeccCCCceeeccccccC
Confidence 3344556666677788875421 12345566666666778999999999999998653
Q ss_pred -ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEE
Q 008467 307 -DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK 385 (564)
Q Consensus 307 -~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 385 (564)
.....+.+|.++|-+|.|++....|++|+.+|+|++||+...+
T Consensus 60 p~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk------------------------------------ 103 (825)
T KOG0267|consen 60 PNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK------------------------------------ 103 (825)
T ss_pred CchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh------------------------------------
Confidence 3344688999999999999999999999999999999997643
Q ss_pred cCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEE
Q 008467 386 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 465 (564)
Q Consensus 386 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l 465 (564)
.++++.||...+.++.|+|-+.++|+|+.|+.+++||.+...|.+.+.+|...+..++|+|+|. ++
T Consensus 104 -----~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr---------~v 169 (825)
T KOG0267|consen 104 -----IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGR---------WV 169 (825)
T ss_pred -----hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCc---------ee
Confidence 3456788999999999999999999999999999999999999999999999999999999997 79
Q ss_pred EEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCCEEEEEEccC
Q 008467 466 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKE 544 (564)
Q Consensus 466 ~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~ 544 (564)
++|+.|.+++|||...|+.+..+..|...|.++.|+|..-.+++||.|++|++||+++-+++..... ..+|-+++|+|+
T Consensus 170 ~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 170 ASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPD 249 (825)
T ss_pred eccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCC
Confidence 9999999999999999999999999999999999999999999999999999999998877765543 356889999999
Q ss_pred CCEEEEEEcC
Q 008467 545 GDKIAACFAN 554 (564)
Q Consensus 545 g~~la~~~~~ 554 (564)
|..++.|...
T Consensus 250 ~~~~~~G~q~ 259 (825)
T KOG0267|consen 250 GKIVLSGEQI 259 (825)
T ss_pred ceeeecCchh
Confidence 9988877543
No 127
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.2e-23 Score=187.35 Aligned_cols=236 Identities=20% Similarity=0.381 Sum_probs=183.3
Q ss_pred CCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCC--ce-eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc
Q 008467 274 KSKDVTTLDWNG-EGTLLATGSYDGQARIWSTNG--DL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE 349 (564)
Q Consensus 274 ~~~~V~~l~~s~-~g~~l~sg~~dg~i~vw~~~~--~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~ 349 (564)
....|.+|+||| ...+++.|+.||+||+|+++. .. ......|.+||.+++|+.+|..+++|+.|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 456799999999 666777999999999999764 22 23456799999999999999999999999999999998874
Q ss_pred eeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC--EEEEEeCCCcEEEEe
Q 008467 350 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS--LLASCSDDVTAKIWN 427 (564)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~--~las~s~dg~i~iwd 427 (564)
.. .+..|.++|.++.|-+... .|+|||.|.+||.||
T Consensus 106 ~~------------------------------------------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD 143 (347)
T KOG0647|consen 106 VS------------------------------------------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD 143 (347)
T ss_pred ee------------------------------------------eeeecccceeEEEEecCCCcceeEecccccceeecc
Confidence 32 2345778888888876554 899999999999999
Q ss_pred CCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE--eCCCCCEEEEEEcCCCC
Q 008467 428 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL--NGHREPVYSLAFSPTGE 505 (564)
Q Consensus 428 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~h~~~i~~~~~spdg~ 505 (564)
++...++.++.- ...+++...-. .+++.+..+..|.+++++++...+.. ....-.+.+|+..+|..
T Consensus 144 ~R~~~pv~t~~L-PeRvYa~Dv~~-----------pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~ 211 (347)
T KOG0647|consen 144 TRSSNPVATLQL-PERVYAADVLY-----------PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKD 211 (347)
T ss_pred cCCCCeeeeeec-cceeeehhccC-----------ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCC
Confidence 999888877653 34566654321 26777888999999999876443221 11223478999989988
Q ss_pred EEEEEeCCCcEEEEeCCCCe--EEEEEecC-------C---CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 506 YLASGSLDKSMHIWSLKEGK--IVKTYTGN-------G---GIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 506 ~lasgs~dg~i~iw~~~~~~--~~~~~~~~-------~---~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
..|.|+-.|++-|..+..+. .--+|..+ . .|++++|+|.-..|+++++||+...||-+
T Consensus 212 ~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 212 GFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred ceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecch
Confidence 88999999999999998873 22333322 1 25689999998999999999999999854
No 128
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.2e-23 Score=197.30 Aligned_cols=280 Identities=16% Similarity=0.253 Sum_probs=222.3
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCce---eEeecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCc
Q 008467 273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL---KCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTE 348 (564)
Q Consensus 273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~---~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~ 348 (564)
+....|+++.|+|...++++|+.||.++||.++|+. +..+.--..||.+.+|.|+|. .+++++.-..+..||+.+.
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 345789999999999999999999999999998764 344555678999999999999 8899999999999999887
Q ss_pred ceeEEEee--ccc-CeEEEEc-CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEE
Q 008467 349 EWKQQFEF--HSG-PTLDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 424 (564)
Q Consensus 349 ~~~~~~~~--~~~-~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~ 424 (564)
++.+.-.. +.. .+-.+.. +....++..+..|.|++....++..+..++ -.+.|..++|+.+++.|++++.+|.|.
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVY 369 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEE
Confidence 75442211 111 1111111 233466788889999998888777766665 367899999999999999999999999
Q ss_pred EEeCCCCeeeeecccccc-cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC------CeEEEEEeCCCCCEEE
Q 008467 425 IWNMKQDKYVHDLREHSK-EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------GKLLYSLNGHREPVYS 497 (564)
Q Consensus 425 iwd~~~~~~~~~~~~~~~-~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~------~~~~~~~~~h~~~i~~ 497 (564)
+||++...+++.+....+ .-++++.++++. +||+||..|.|.|||..+ .+++..+..-...|++
T Consensus 370 v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~---------ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Its 440 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFVDDGSVHGTSLCISLNGS---------YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITS 440 (514)
T ss_pred EEecCCcceEEEEeecCccceeeeeecCCCc---------eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeee
Confidence 999999998888764332 125666667765 899999999999999653 3566677777788999
Q ss_pred EEEcCCCCEEEEEeC--CCcEEEEeCCCCeEEEEEecC----CCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 498 LAFSPTGEYLASGSL--DKSMHIWSLKEGKIVKTYTGN----GGIFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 498 ~~~spdg~~lasgs~--dg~i~iw~~~~~~~~~~~~~~----~~i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
+.|+||++.||.+|. +..+++-.+.+-.+...|+.. +-+++++|+|.|-+||+|-..|.|.+|.+
T Consensus 441 l~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 441 LQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred eeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 999999999998874 568999888877766666542 34789999999999999999999999976
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=8.2e-24 Score=198.87 Aligned_cols=228 Identities=21% Similarity=0.380 Sum_probs=191.2
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE
Q 008467 275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 353 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 353 (564)
.++|.+++-+|+|.+|+.|+..|.+++|.+. |.+...+.+|=.+|++++|+.||.+|+|||.||.|.+|++..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~------ 154 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD------ 154 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe------
Confidence 4679999999999999999999999999975 677788899999999999999999999999999999998632
Q ss_pred EeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC--CCEEEEEeCCCcEEEEeCCCC
Q 008467 354 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQD 431 (564)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~--~~~las~s~dg~i~iwd~~~~ 431 (564)
++....++ ..+|+..|..|+-.|+.+...+- ...|+|+|.|.++++||+..+
T Consensus 155 ------------------lv~a~~~~--------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g 208 (476)
T KOG0646|consen 155 ------------------LVSADNDH--------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG 208 (476)
T ss_pred ------------------ecccccCC--------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc
Confidence 11111111 35688899999999999888764 357999999999999999999
Q ss_pred eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC----------------CeEEEEEeCCCC--
Q 008467 432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----------------GKLLYSLNGHRE-- 493 (564)
Q Consensus 432 ~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----------------~~~~~~~~~h~~-- 493 (564)
..+.++. ....+.++...|... .+..|+.+|.|.+.++.. +..+..+.||..
T Consensus 209 ~LLlti~-fp~si~av~lDpae~---------~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~ 278 (476)
T KOG0646|consen 209 VLLLTIT-FPSSIKAVALDPAER---------VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENES 278 (476)
T ss_pred eeeEEEe-cCCcceeEEEccccc---------EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCc
Confidence 8887765 345788999988764 677899999999987643 223456788987
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe-cCCCEEEEEEccC
Q 008467 494 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT-GNGGIFEVCWNKE 544 (564)
Q Consensus 494 ~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~-~~~~i~~~~w~~~ 544 (564)
+|+|+++|-||..|++|+.||.|+|||+.+..++++.. ..+.|+.+.++|=
T Consensus 279 ~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 279 AITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred ceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 99999999999999999999999999999999888887 6778888888664
No 130
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.7e-23 Score=185.07 Aligned_cols=272 Identities=21% Similarity=0.363 Sum_probs=211.5
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee
Q 008467 278 VTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 356 (564)
Q Consensus 278 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 356 (564)
-.|+.||+-|.+||+|..||.|.|||... .....+.+|..||.+++||++|+.|+|+|.|..|.+||+..+.+.+.+.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 67899999999999999999999999764 34557889999999999999999999999999999999999998888776
Q ss_pred cccCeEEEEcCC--CceEEEEeCCCeEEEEEcCCCceeeEecC--CC----cceEEEEECCCCCEEEEEeCCCcEEEEeC
Q 008467 357 HSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTFAG--HQ----GEVNCVKWDPTGSLLASCSDDVTAKIWNM 428 (564)
Q Consensus 357 ~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--h~----~~i~~v~~~~~~~~las~s~dg~i~iwd~ 428 (564)
. .++....|++ ...++++-.+..-.+.++...+ ..+-. .. ....+..|++.|+++++|...|.+.++|.
T Consensus 106 ~-spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 106 D-SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred c-CccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 4 4666677753 4556666555555555555422 22211 11 12234568999999999999999999999
Q ss_pred CCCeeeeeccccc-ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC----C---eE--EEEEeC--CCCCEE
Q 008467 429 KQDKYVHDLREHS-KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----G---KL--LYSLNG--HREPVY 496 (564)
Q Consensus 429 ~~~~~~~~~~~~~-~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----~---~~--~~~~~~--h~~~i~ 496 (564)
.+.+++..++-.. ..|..|.++..|. .|+.-+.|..||.|+++. | ++ .+.+.. .+..-.
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~g~---------~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk 253 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRKGR---------FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWK 253 (405)
T ss_pred chheeeeeeeechheeeeEEEEeccCc---------EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhh
Confidence 9999998887665 7788899988775 677888999999999762 1 11 011110 123446
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEEEEecCC--CEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 497 SLAFSPTGEYLASGSL-DKSMHIWSLKEGKIVKTYTGNG--GIFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 497 ~~~~spdg~~lasgs~-dg~i~iw~~~~~~~~~~~~~~~--~i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
+++||.||.|+++|+. -..++||....|.+++.+.+.. ...++.|+|---.++.- ..|.|.||..
T Consensus 254 ~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 254 KCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred heeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEe
Confidence 7899999999987764 4579999999999999998865 37799999998777766 7789999975
No 131
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1e-21 Score=192.69 Aligned_cols=324 Identities=20% Similarity=0.305 Sum_probs=230.5
Q ss_pred eEccCCc-cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 210 TILEGHT-SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 210 ~~l~~h~-~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
.++.||. ..|.+++|. ++..|+|.+.+|.|.-||+.+.+.. + ........|.+++.+|.++
T Consensus 62 ~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~-------------~----~~d~~gg~IWsiai~p~~~ 123 (691)
T KOG2048|consen 62 PVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQK-------------Y----NIDSNGGAIWSIAINPENT 123 (691)
T ss_pred EEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCcee-------------E----EecCCCcceeEEEeCCccc
Confidence 4555554 679999999 5566788889999999999875421 1 1122357899999999999
Q ss_pred EEEEEeCCCeEEEEECCCcee---EeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeec-----c-c
Q 008467 289 LLATGSYDGQARIWSTNGDLK---CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH-----S-G 359 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~~~~~---~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-----~-~ 359 (564)
.++.|+.||.+...+.+.+.. ..+...++.|.+++|+|++..+++|+.||.|++||+.++......... . .
T Consensus 124 ~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~ 203 (691)
T KOG2048|consen 124 ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKRE 203 (691)
T ss_pred eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCC
Confidence 999999999877777654432 346677899999999999999999999999999999988766532221 1 1
Q ss_pred --CeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee--e-
Q 008467 360 --PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--V- 434 (564)
Q Consensus 360 --~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~--~- 434 (564)
-+..+.+..+..++++..-|+|.+||-..+..++.+..|.+.|.|++..+++..+++++.|+.|..+...+.+. +
T Consensus 204 ~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~ 283 (691)
T KOG2048|consen 204 PTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVI 283 (691)
T ss_pred ceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceee
Confidence 24455566788899999999999999999999999999999999999999999999999999999888765532 1
Q ss_pred -eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCe----------------------------------------
Q 008467 435 -HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST---------------------------------------- 473 (564)
Q Consensus 435 -~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~---------------------------------------- 473 (564)
.....|...+.+++..+. .|.+|+.|.+
T Consensus 284 ~~~r~~h~hdvrs~av~~~-----------~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~ 352 (691)
T KOG2048|consen 284 NSRRDLHAHDVRSMAVIEN-----------ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKA 352 (691)
T ss_pred eccccCCcccceeeeeecc-----------eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEecc
Confidence 222346666666655443 2223333332
Q ss_pred --EEEEeCCCC----e----EEEEE-eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC------------------
Q 008467 474 --VKLWDVELG----K----LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG------------------ 524 (564)
Q Consensus 474 --i~iwd~~~~----~----~~~~~-~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~------------------ 524 (564)
+.+|.+.+. + .+..+ ......|.+.+.||+|++||.+.-- +++||.++.-
T Consensus 353 h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~~~~~a 431 (691)
T KOG2048|consen 353 HGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINVDDVPLALLDA 431 (691)
T ss_pred ccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEeccchhhhccc
Confidence 333333221 0 01111 1123468999999999999987622 2444443320
Q ss_pred ----------eE---------EEEEe----------------cCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 525 ----------KI---------VKTYT----------------GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 525 ----------~~---------~~~~~----------------~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
++ +..++ ....|..+.-+++|++||+.+..|.|.|||+.
T Consensus 432 ~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~ 505 (691)
T KOG2048|consen 432 SAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLE 505 (691)
T ss_pred eeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcc
Confidence 00 00000 12357889999999999999999999999975
No 132
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=1.1e-21 Score=196.43 Aligned_cols=319 Identities=18% Similarity=0.334 Sum_probs=240.1
Q ss_pred cceEEEEECCCC--CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 008467 217 SEVCACAWSPAG--SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 294 (564)
Q Consensus 217 ~~V~~~~~sp~~--~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~ 294 (564)
+.|+++ +||.. +.++.|+.+|.+.||++.+++. +..+. .....||++.-+|--..+|.|.
T Consensus 160 ~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~-------------v~~f~----~~~s~IT~ieqsPaLDVVaiG~ 221 (910)
T KOG1539|consen 160 DFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKV-------------VYTFQ----EFFSRITAIEQSPALDVVAIGL 221 (910)
T ss_pred CceeeE-ecchhheeeEEEeecCCcEEEEEeccCcE-------------EEEec----ccccceeEeccCCcceEEEEec
Confidence 336665 57764 6788999999999999987652 12222 2236799999999889999999
Q ss_pred CCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCcceeEEEe-ecccCeEEEEcCCC-c
Q 008467 295 YDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFE-FHSGPTLDVDWRNN-V 370 (564)
Q Consensus 295 ~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~-~ 370 (564)
.+|+|.|++.. ++...++..-.+.|+++.|..||+.+ ++|+..|.+.+||+...+.+.... .|.+.+....+.+. -
T Consensus 222 ~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep 301 (910)
T KOG1539|consen 222 ENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP 301 (910)
T ss_pred cCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc
Confidence 99999999975 56666776556999999999999865 566677999999999888877665 66566666666544 4
Q ss_pred eEEEEeCCCeEEEEEcC--CC--ceeeEecCCCcceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCee------------
Q 008467 371 SFATSSTDNMIYVCKIG--EN--RPIKTFAGHQGEVNCVKWD-PTGSLLASCSDDVTAKIWNMKQDKY------------ 433 (564)
Q Consensus 371 ~~~~~~~d~~i~~~~~~--~~--~~~~~~~~h~~~i~~v~~~-~~~~~las~s~dg~i~iwd~~~~~~------------ 433 (564)
.+++.+.|+.+++|-.+ .+ +.++.-.||..+..|++|. ..|.++.+++.|++.+.+++.....
T Consensus 302 Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~ 381 (910)
T KOG1539|consen 302 VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKR 381 (910)
T ss_pred eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccc
Confidence 56788889887776554 33 3455557999999999987 6788899999999888887521100
Q ss_pred ----------------eee--------------cccccc-----------------------------cEEEEEEccCCC
Q 008467 434 ----------------VHD--------------LREHSK-----------------------------EIYTIRWSPTGS 454 (564)
Q Consensus 434 ----------------~~~--------------~~~~~~-----------------------------~i~~i~~~p~~~ 454 (564)
+.. +..|.+ .+++++.++.|.
T Consensus 382 ~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN 461 (910)
T KOG1539|consen 382 AKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN 461 (910)
T ss_pred cccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc
Confidence 000 001111 122222222221
Q ss_pred CCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE---eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q 008467 455 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSL---NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT 531 (564)
Q Consensus 455 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~ 531 (564)
+.+.|+..|+|-+|++++|-...++ ..|..+|+.++...-++.+++++.+|.+++|+.++..+.+.+.
T Consensus 462 ---------F~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~ 532 (910)
T KOG1539|consen 462 ---------FVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR 532 (910)
T ss_pred ---------eEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec
Confidence 4556788999999999999988888 4799999999999889999999999999999998766444332
Q ss_pred -----------------------------------------c-CCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 532 -----------------------------------------G-NGGIFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 532 -----------------------------------------~-~~~i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
+ ...|++++|||||++|++++.|++|++||+
T Consensus 533 l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 533 LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 1 245899999999999999999999999997
No 133
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=3e-23 Score=194.70 Aligned_cols=237 Identities=26% Similarity=0.350 Sum_probs=198.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeE-----------------ee--cCCCCCEEEEEeCCCCCEEEEe
Q 008467 274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-----------------TL--SKHKGPIFSLKWNKKGDYLLTG 334 (564)
Q Consensus 274 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~-----------------~~--~~h~~~V~~l~~~~~~~~l~s~ 334 (564)
|.-+|++++++|++.+.++++.+|+|.=|+....... .. .+|...|.+++.+++|+||++|
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatg 220 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATG 220 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEec
Confidence 4567999999999999999999999999985421100 11 2788899999999999999999
Q ss_pred eCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEE
Q 008467 335 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL 414 (564)
Q Consensus 335 s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l 414 (564)
+.|..|.||+.++.+ +++.|.+|.+.|.+++|-....-+
T Consensus 221 g~d~~v~Iw~~~t~e-----------------------------------------hv~~~~ghr~~V~~L~fr~gt~~l 259 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTLE-----------------------------------------HVKVFKGHRGAVSSLAFRKGTSEL 259 (479)
T ss_pred CCCceEEEecCcccc-----------------------------------------hhhcccccccceeeeeeecCccce
Confidence 999999999987754 455688999999999998877889
Q ss_pred EEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCC
Q 008467 415 ASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP 494 (564)
Q Consensus 415 as~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~ 494 (564)
+++|.|+++++|++....++.++.+|+..|..|.-..... .+.+|+.|+++++|++. ......+.+|.+.
T Consensus 260 ys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR---------~vtVGgrDrT~rlwKi~-eesqlifrg~~~s 329 (479)
T KOG0299|consen 260 YSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRER---------CVTVGGRDRTVRLWKIP-EESQLIFRGGEGS 329 (479)
T ss_pred eeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccc---------eEEeccccceeEEEecc-ccceeeeeCCCCC
Confidence 9999999999999999999999999999999986554432 56677799999999995 3334567788889
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec------C-------CCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 495 VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG------N-------GGIFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 495 i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~------~-------~~i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
+-|++|=. ...+++||.+|.|.+|++.+.+.+.+... . ..|++|+--|-.+.+|+|+.+|.|++|-
T Consensus 330 idcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~ 408 (479)
T KOG0299|consen 330 IDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK 408 (479)
T ss_pred eeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence 99999964 46789999999999999998888777642 1 1578999999999999999999999995
Q ss_pred e
Q 008467 562 F 562 (564)
Q Consensus 562 ~ 562 (564)
+
T Consensus 409 i 409 (479)
T KOG0299|consen 409 I 409 (479)
T ss_pred e
Confidence 4
No 134
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.92 E-value=2.2e-23 Score=202.13 Aligned_cols=152 Identities=28% Similarity=0.535 Sum_probs=122.6
Q ss_pred eEEEEECC-CCCEEEEEeCCCcEEEEeCCCC-------eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCe
Q 008467 402 VNCVKWDP-TGSLLASCSDDVTAKIWNMKQD-------KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST 473 (564)
Q Consensus 402 i~~v~~~~-~~~~las~s~dg~i~iwd~~~~-------~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~ 473 (564)
|+.+.|+| |...||.+++||.|+||.+..+ .+-..+..|...|++++|+|... .+|++++.|-+
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAa--------dvLa~asyd~T 701 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAA--------DVLAVASYDST 701 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhh--------hHhhhhhccce
Confidence 56778887 5577999999999999998643 23456778999999999999754 27999999999
Q ss_pred EEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCC----EEEEEEccCCCEEE
Q 008467 474 VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG----IFEVCWNKEGDKIA 549 (564)
Q Consensus 474 i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~----i~~~~w~~~g~~la 549 (564)
|++||+++++....+.+|.+.|.+++|||||+.+|+.+.||+|++|+.++++. ..+.+++. --.+.|--||.++.
T Consensus 702 i~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~-pv~Eg~gpvgtRgARi~wacdgr~vi 780 (1012)
T KOG1445|consen 702 IELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ-PVYEGKGPVGTRGARILWACDGRIVI 780 (1012)
T ss_pred eeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC-ccccCCCCccCcceeEEEEecCcEEE
Confidence 99999999999999999999999999999999999999999999999987652 12333332 34688999999777
Q ss_pred EEEcCC----cEEEEEe
Q 008467 550 ACFANH----TVCVLDF 562 (564)
Q Consensus 550 ~~~~~~----~v~v~~~ 562 (564)
+.+.|+ .|.+||.
T Consensus 781 v~Gfdk~SeRQv~~Y~A 797 (1012)
T KOG1445|consen 781 VVGFDKSSERQVQMYDA 797 (1012)
T ss_pred Eecccccchhhhhhhhh
Confidence 655443 3455543
No 135
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.3e-24 Score=212.00 Aligned_cols=237 Identities=24% Similarity=0.423 Sum_probs=188.2
Q ss_pred EEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeec--c-----cCeEEEEcC--CCceEEEEeCCCeEEEEEcCC-
Q 008467 319 IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH--S-----GPTLDVDWR--NNVSFATSSTDNMIYVCKIGE- 388 (564)
Q Consensus 319 V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--~-----~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~- 388 (564)
..+|..+++-+.++.++. ..++|+-+............ . ....++.|. ....+++++..|.|.+|++..
T Consensus 42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~ 120 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKS 120 (839)
T ss_pred cceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcc
Confidence 344555677777776654 46677765443322211111 1 123466775 346789999999999999987
Q ss_pred --CceeeEecCCCcceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEE
Q 008467 389 --NRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 465 (564)
Q Consensus 389 --~~~~~~~~~h~~~i~~v~~~~~~-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l 465 (564)
++.+..|..|+..+++++|++.. .+|+|||.||+|++||++......+++.....|..+.|+|... ..+
T Consensus 121 ~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~--------~~F 192 (839)
T KOG0269|consen 121 IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYG--------NKF 192 (839)
T ss_pred ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCC--------ceE
Confidence 66777899999999999999865 5789999999999999999998888998889999999999652 478
Q ss_pred EEEeCCCeEEEEeCCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEecCCCEEEEEEc
Q 008467 466 ASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK--IVKTYTGNGGIFEVCWN 542 (564)
Q Consensus 466 ~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~--~~~~~~~~~~i~~~~w~ 542 (564)
+++...|.+++||++.. ++...+.+|.++|.++.|+|++.||||||.|+.|+||+..+++ .+.+.....++..|.|.
T Consensus 193 ~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWR 272 (839)
T KOG0269|consen 193 ASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWR 272 (839)
T ss_pred EEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeec
Confidence 99999999999999864 4567788999999999999999999999999999999998654 45555666778999999
Q ss_pred cCCC-EEEEEEc--CCcEEEEEeeC
Q 008467 543 KEGD-KIAACFA--NHTVCVLDFRM 564 (564)
Q Consensus 543 ~~g~-~la~~~~--~~~v~v~~~~~ 564 (564)
|+-. +||+|+. |-.|.|||+|+
T Consensus 273 P~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 273 PARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred cCccchhhhhhccccceEEEEeecc
Confidence 9875 7887754 66899999984
No 136
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=1.8e-23 Score=197.48 Aligned_cols=239 Identities=21% Similarity=0.334 Sum_probs=193.4
Q ss_pred CeEEEEECCCCC-EEEEEeCCCeEEEEECCCcee---EeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeE
Q 008467 277 DVTTLDWNGEGT-LLATGSYDGQARIWSTNGDLK---CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 352 (564)
Q Consensus 277 ~V~~l~~s~~g~-~l~sg~~dg~i~vw~~~~~~~---~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~ 352 (564)
.+.+++|+.... .+++.+.|..+++|..+|+.. ..-......-+|+.......|+++|+..++|+|||++...
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl--- 112 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKL--- 112 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHH---
Confidence 389999998764 334455678999998877621 1111111234556555666899999999999999997432
Q ss_pred EEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467 353 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 432 (564)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~ 432 (564)
..+.+++|++.|+++.++....+||+++..|.|.|-.+.++.
T Consensus 113 --------------------------------------~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~ 154 (673)
T KOG4378|consen 113 --------------------------------------IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ 154 (673)
T ss_pred --------------------------------------HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCc
Confidence 234567899999999999999999999999999999999887
Q ss_pred eeeecccc-cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE-eCCCCCEEEEEEcCCC-CEEEE
Q 008467 433 YVHDLREH-SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTG-EYLAS 509 (564)
Q Consensus 433 ~~~~~~~~-~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~~~~~spdg-~~las 509 (564)
....|... ...+.-+.|+|... .+|.+++.+|.|.+||+.....++.+ ..|..|...|+|||.. ..||+
T Consensus 155 ~tt~f~~~sgqsvRll~ys~skr--------~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vs 226 (673)
T KOG4378|consen 155 KTTTFTIDSGQSVRLLRYSPSKR--------FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVS 226 (673)
T ss_pred cccceecCCCCeEEEeecccccc--------eeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEE
Confidence 77777654 34556788988654 57899999999999999877766554 6799999999999976 56789
Q ss_pred EeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEeeC
Q 008467 510 GSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 564 (564)
Q Consensus 510 gs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~~ 564 (564)
.|.|+.|.+||....+....+.-..+...++|.++|.+|++|..+|.|..||+|+
T Consensus 227 VG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 227 VGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred ecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence 9999999999999888888888788899999999999999999999999999996
No 137
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=8.2e-25 Score=215.40 Aligned_cols=236 Identities=25% Similarity=0.501 Sum_probs=204.9
Q ss_pred ccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEE
Q 008467 212 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 291 (564)
Q Consensus 212 l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~ 291 (564)
.-.|...|.++..-..++.+++|+.|-.+-+|.+...-. ... ...|..+|.++.|+++..+|+
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~----------i~S-------~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA----------ITS-------LTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCch----------hhe-------eeccCCcceeeecCcchhhhc
Confidence 446888888888866789999999999999998753211 111 234678899999999999999
Q ss_pred EEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCc
Q 008467 292 TGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 370 (564)
Q Consensus 292 sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (564)
.|+.+|+|++||.. +....++.+|...+.++.|+|-+.++++|+.|+.+++||.+...
T Consensus 87 agsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G--------------------- 145 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG--------------------- 145 (825)
T ss_pred ccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC---------------------
Confidence 99999999999975 56677899999999999999999999999999999999987533
Q ss_pred eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEc
Q 008467 371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS 450 (564)
Q Consensus 371 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~ 450 (564)
+...+.+|...+.+++|+|+|+++++|++|.+++|||...++...+|..|.+.+.++.|+
T Consensus 146 --------------------c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~h 205 (825)
T KOG0267|consen 146 --------------------CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFH 205 (825)
T ss_pred --------------------ceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccC
Confidence 345677888899999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCC
Q 008467 451 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK 514 (564)
Q Consensus 451 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg 514 (564)
|.. .++++||.|++|++||+++-+.+-........|.+++|+|+|+.+++|-...
T Consensus 206 p~e---------~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 206 PLE---------VLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred chh---------hhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 865 3799999999999999998888887777788999999999999998886554
No 138
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=7.3e-23 Score=187.41 Aligned_cols=256 Identities=23% Similarity=0.427 Sum_probs=182.4
Q ss_pred ccCCccceEEEEECCCC--CEEEEEECCCcEEEEeCCCCCCCC-CCCC--CCceEEEEEeeccccccCCCCeEEEEECCC
Q 008467 212 LEGHTSEVCACAWSPAG--SLLASGSGDSTARIWTIADGTSNG-GAQN--GPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 286 (564)
Q Consensus 212 l~~h~~~V~~~~~sp~~--~~lasgs~D~~i~iW~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 286 (564)
..+|.+.|+.+.-++-+ .+.|+=+..|.+.||++....... ..+. .......+..+ ..|...=..|+|||-
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~----~ghk~EGy~LdWSp~ 222 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF----NGHKGEGYGLDWSPI 222 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe----cccCccceeeecccc
Confidence 34677788877777754 577777889999999986422110 0000 00000011112 233455678999993
Q ss_pred C-CEEEEEeCCCeEEEEECC-Ccee---EeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCcceeEEEeecccC
Q 008467 287 G-TLLATGSYDGQARIWSTN-GDLK---CTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP 360 (564)
Q Consensus 287 g-~~l~sg~~dg~i~vw~~~-~~~~---~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~ 360 (564)
. -.|+||.--+.|++|... |... ..+.+|+.+|-.|+|||.. ..|+|||.||+|+|||++.+.-
T Consensus 223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~---------- 292 (440)
T KOG0302|consen 223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK---------- 292 (440)
T ss_pred cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc----------
Confidence 2 247788888999999854 3322 2466799999999999975 5688999999999999987631
Q ss_pred eEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC---Ceeeeec
Q 008467 361 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ---DKYVHDL 437 (564)
Q Consensus 361 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~---~~~~~~~ 437 (564)
++....+.|.+.|+.|.|+....+||+|++||+++|||+++ +.++..|
T Consensus 293 -----------------------------~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f 343 (440)
T KOG0302|consen 293 -----------------------------KAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATF 343 (440)
T ss_pred -----------------------------cceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeE
Confidence 12223367999999999999999999999999999999874 5678899
Q ss_pred ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-------------------EEEEEeCCCCCEEEE
Q 008467 438 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-------------------LLYSLNGHREPVYSL 498 (564)
Q Consensus 438 ~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-------------------~~~~~~~h~~~i~~~ 498 (564)
+.|..+|++|.|+|.... .|++++.|..|.|||+..-. +++.-.+ ...|..+
T Consensus 344 k~Hk~pItsieW~p~e~s--------~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG-Qke~Kev 414 (440)
T KOG0302|consen 344 KYHKAPITSIEWHPHEDS--------VIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG-QKEVKEV 414 (440)
T ss_pred EeccCCeeEEEeccccCc--------eEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc-hhHhhhh
Confidence 999999999999997642 68888999999999975311 2222222 2357778
Q ss_pred EEcCCC-CEEEEEeCCCcEEEEe
Q 008467 499 AFSPTG-EYLASGSLDKSMHIWS 520 (564)
Q Consensus 499 ~~spdg-~~lasgs~dg~i~iw~ 520 (564)
.|++.- -+|++.+.|| +.||.
T Consensus 415 hWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 415 HWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred eeccCCCCeEEEecccc-eeEEE
Confidence 899874 5778888888 55664
No 139
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.8e-22 Score=188.65 Aligned_cols=263 Identities=21% Similarity=0.351 Sum_probs=203.5
Q ss_pred EEeCC-CeEEEEECC-CceeEeecCC-CCCEEEEEeCCCCCEEEEeeCC-CcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467 292 TGSYD-GQARIWSTN-GDLKCTLSKH-KGPIFSLKWNKKGDYLLTGSCD-KTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 367 (564)
Q Consensus 292 sg~~d-g~i~vw~~~-~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~s~D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (564)
+++.| ..+.+||.. |....++.+- ...-.++..- .+.|++++... ..+.+|.+.......+...-.+++.++.-.
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS 90 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence 33444 458888865 3333334332 1111111111 23567766554 468899887665555555566788888888
Q ss_pred CCceEEEEe-CCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC---------CCeeeeec
Q 008467 368 NNVSFATSS-TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK---------QDKYVHDL 437 (564)
Q Consensus 368 ~~~~~~~~~-~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~---------~~~~~~~~ 437 (564)
+...|+.++ -.+.+|+|.+.++..+..+.+|-..|+|+.|+-||.+|+|||.||.|.+|++. +-++.+.|
T Consensus 91 n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f 170 (476)
T KOG0646|consen 91 NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF 170 (476)
T ss_pred CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee
Confidence 887777766 89999999999999999999999999999999999999999999999999862 34677889
Q ss_pred ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008467 438 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMH 517 (564)
Q Consensus 438 ~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~ 517 (564)
..|.-+|+.+...+.|.. ..|+|+|.|.++++||+..|.++.++. ...+|.+++.+|-++.+..|+.+|.|.
T Consensus 171 ~~HtlsITDl~ig~Gg~~-------~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~ 242 (476)
T KOG0646|consen 171 SDHTLSITDLQIGSGGTN-------ARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIF 242 (476)
T ss_pred ccCcceeEEEEecCCCcc-------ceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEE
Confidence 999999999988776531 268999999999999999999988876 456899999999999999999999999
Q ss_pred EEeCCCCe----------------EEEEEecC---CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 518 IWSLKEGK----------------IVKTYTGN---GGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 518 iw~~~~~~----------------~~~~~~~~---~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
+.++.... ....+.++ ..|++++.+.||+.|++|..||.|+|||+.
T Consensus 243 ~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 243 QNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred eeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 88875322 12233332 369999999999999999999999999974
No 140
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.6e-21 Score=191.29 Aligned_cols=280 Identities=20% Similarity=0.364 Sum_probs=214.1
Q ss_pred CccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 008467 215 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 294 (564)
Q Consensus 215 h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~ 294 (564)
-..+|.++||+.+.+.||.+-.||.|.||++..+- .......+ +....|.+++|+ ++..|++.+
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w------------~~~~vi~g---~~drsIE~L~W~-e~~RLFS~g 87 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW------------FLEPVIHG---PEDRSIESLAWA-EGGRLFSSG 87 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCc------------eeeEEEec---CCCCceeeEEEc-cCCeEEeec
Confidence 34689999999999999999999999999986531 11111122 446789999999 455677889
Q ss_pred CCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEE
Q 008467 295 YDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 373 (564)
Q Consensus 295 ~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (564)
.+|.|.-||+. ++.+..+....++|++++.+|.++.++.|+.||.+...+...+.....
T Consensus 88 ~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~-------------------- 147 (691)
T KOG2048|consen 88 LSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYK-------------------- 147 (691)
T ss_pred CCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEE--------------------
Confidence 99999999974 567777888889999999999999999999999777766655432211
Q ss_pred EEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeec-----cc---ccccEE
Q 008467 374 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL-----RE---HSKEIY 445 (564)
Q Consensus 374 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~-----~~---~~~~i~ 445 (564)
..|...++.|.+++|+|++..||+|+.||.|++||..++..++.. +. ...-|+
T Consensus 148 -------------------r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW 208 (691)
T KOG2048|consen 148 -------------------RSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW 208 (691)
T ss_pred -------------------eecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEE
Confidence 122233578999999999999999999999999999988776521 11 122356
Q ss_pred EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467 446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 525 (564)
Q Consensus 446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~ 525 (564)
++.+-.++ .|++|...|+|++||...+.++.....|...|.+++-++++.+++++|.|+.|.-|...+.+
T Consensus 209 Sv~~Lrd~----------tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 209 SVLFLRDS----------TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNK 278 (691)
T ss_pred EEEEeecC----------cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCc
Confidence 66665544 58999999999999999999999999999999999999999999999999999999887664
Q ss_pred EEEE----Eec-CCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 526 IVKT----YTG-NGGIFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 526 ~~~~----~~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
-... ... ...+-+++-.+. .|.+|+.|..++|--
T Consensus 279 ~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 279 SEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICS 317 (691)
T ss_pred cceeeeccccCCcccceeeeeecc--eEEecceeeEEEEcc
Confidence 3111 111 224556665544 777777777776643
No 141
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=7.7e-22 Score=176.26 Aligned_cols=243 Identities=23% Similarity=0.400 Sum_probs=189.7
Q ss_pred ecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC--cc--eeEEEeecccCeEEEEcCC---CceEEEEeCCCeEEEE
Q 008467 312 LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT--EE--WKQQFEFHSGPTLDVDWRN---NVSFATSSTDNMIYVC 384 (564)
Q Consensus 312 ~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~--~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~i~~~ 384 (564)
-.+|..-|.++.|.+.|+++++||.|++++|||.+. +. +...+..|.+.+..+.|.. ...+++|+.|+++.+|
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 357889999999999999999999999999999643 33 4556889999999999964 3578999999999999
Q ss_pred EcCCC---------ceeeEecCCCcceEEEEECCC--CCEEEEEeCCCcEEEEeCC------CCeeeeecc-------cc
Q 008467 385 KIGEN---------RPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMK------QDKYVHDLR-------EH 440 (564)
Q Consensus 385 ~~~~~---------~~~~~~~~h~~~i~~v~~~~~--~~~las~s~dg~i~iwd~~------~~~~~~~~~-------~~ 440 (564)
.-... ....++....+.|+.++|.|. |-.+|+++.||.+|||+.- .....++++ .+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 86321 123456666788999999985 5578999999999999753 333444454 46
Q ss_pred cccEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeEEEEeCCCC----eEEEEEeCCCCCEEEEEEcCCC----CEE
Q 008467 441 SKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELG----KLLYSLNGHREPVYSLAFSPTG----EYL 507 (564)
Q Consensus 441 ~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~----~~~~~~~~h~~~i~~~~~spdg----~~l 507 (564)
..+..|+.|+|.-. ...+||.|+.+ +.++||....+ ..+.++.+|..||++|+|.|+- ..|
T Consensus 169 ~~~~~CvsWn~sr~------~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~l 242 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRM------HEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLL 242 (361)
T ss_pred cCcceEEeeccccc------cCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeE
Confidence 67889999996432 22367888766 47899975432 3456788999999999999973 468
Q ss_pred EEEeCCCcEEEEeCCCC--------------------eEEEEEec-CCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 508 ASGSLDKSMHIWSLKEG--------------------KIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 508 asgs~dg~i~iw~~~~~--------------------~~~~~~~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
|+|+.|| |+||+++.. +++..+.. ++.+..++|+-.|..|++.+.||.|++|-
T Consensus 243 AvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 243 AVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred EEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 9999999 999998731 12344444 45799999999999999999999999984
No 142
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=1.1e-21 Score=174.03 Aligned_cols=276 Identities=21% Similarity=0.358 Sum_probs=199.1
Q ss_pred CCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCc-----------eeE-----eecCCCCCEEEEEeCCCC-CEEEEee
Q 008467 274 KSKDVTTLDWNG-EGTLLATGSYDGQARIWSTNGD-----------LKC-----TLSKHKGPIFSLKWNKKG-DYLLTGS 335 (564)
Q Consensus 274 ~~~~V~~l~~s~-~g~~l~sg~~dg~i~vw~~~~~-----------~~~-----~~~~h~~~V~~l~~~~~~-~~l~s~s 335 (564)
|.+.|.++...+ .|+++++|+.||.|.+||+... .++ .-.+|+-.|.++.|-|-. -.|.++|
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS 121 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS 121 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence 446688888777 7899999999999999997431 112 124688899999999854 4678899
Q ss_pred CCCcEEEEECCCcceeEEEeecccCeEEEEcC----CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCC
Q 008467 336 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR----NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG 411 (564)
Q Consensus 336 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~ 411 (564)
.|.++++||..+-+..-.|.+.. .++.-.|. ....++++..+-.|++||+..+....++.||.+.|.++.|+|..
T Consensus 122 FDhtlKVWDtnTlQ~a~~F~me~-~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~ 200 (397)
T KOG4283|consen 122 FDHTLKVWDTNTLQEAVDFKMEG-KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS 200 (397)
T ss_pred ccceEEEeecccceeeEEeecCc-eeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCc
Confidence 99999999999877665555432 23333332 24567788888899999999999999999999999999999988
Q ss_pred CE-EEEEeCCCcEEEEeCCCC-eeeeec--------------ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE
Q 008467 412 SL-LASCSDDVTAKIWNMKQD-KYVHDL--------------REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK 475 (564)
Q Consensus 412 ~~-las~s~dg~i~iwd~~~~-~~~~~~--------------~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~ 475 (564)
.+ |||||.||.||+||++.. .+...+ .+|.+.+..++|..++. ++++++.|..++
T Consensus 201 e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~---------~l~~~gtd~r~r 271 (397)
T KOG4283|consen 201 EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR---------YLASCGTDDRIR 271 (397)
T ss_pred eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch---------hhhhccCccceE
Confidence 76 789999999999998753 222222 35777889999998875 689999999999
Q ss_pred EEeCCCCeEEEE-E--eCCC---CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC-CEEEEEEccCCCEE
Q 008467 476 LWDVELGKLLYS-L--NGHR---EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKI 548 (564)
Q Consensus 476 iwd~~~~~~~~~-~--~~h~---~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~-~i~~~~w~~~g~~l 548 (564)
+|+..+|+.... + ..|. .+-..+. +-+...++---.++.+.++++-.|..+..+..+. .|...++.|+=+.+
T Consensus 272 ~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~ 350 (397)
T KOG4283|consen 272 VWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQC 350 (397)
T ss_pred EeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhh
Confidence 999988764221 1 0111 1111122 3344444444455777788877777777776653 35566677776777
Q ss_pred EEEEcCCcEEEE
Q 008467 549 AACFANHTVCVL 560 (564)
Q Consensus 549 a~~~~~~~v~v~ 560 (564)
.++..|+.+.-|
T Consensus 351 ~tg~~d~ni~~w 362 (397)
T KOG4283|consen 351 FTGDMNGNIYMW 362 (397)
T ss_pred hccccCCccccc
Confidence 777777666544
No 143
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=2.3e-22 Score=184.14 Aligned_cols=238 Identities=25% Similarity=0.538 Sum_probs=180.5
Q ss_pred CCCCeEEEEECC--CCCEEEEEeCCCeEEEEECCC-----------------ceeEeecCCCCCEEEEEeCCCC-CEEEE
Q 008467 274 KSKDVTTLDWNG--EGTLLATGSYDGQARIWSTNG-----------------DLKCTLSKHKGPIFSLKWNKKG-DYLLT 333 (564)
Q Consensus 274 ~~~~V~~l~~s~--~g~~l~sg~~dg~i~vw~~~~-----------------~~~~~~~~h~~~V~~l~~~~~~-~~l~s 333 (564)
+.+.+..+.-++ +..+.++-+..|.|.||+... ..+.++.+|.+.=++|+|||-- ..|+|
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Lls 229 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLS 229 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccccc
Confidence 344455554444 445666667789999998532 2345778899999999999943 34888
Q ss_pred eeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCC-C
Q 008467 334 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-S 412 (564)
Q Consensus 334 ~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~ 412 (564)
|..-+.|++|...++.|.- + ...|.+|+..|..++|||.. .
T Consensus 230 GDc~~~I~lw~~~~g~W~v----------------------------------d----~~Pf~gH~~SVEDLqWSptE~~ 271 (440)
T KOG0302|consen 230 GDCVKGIHLWEPSTGSWKV----------------------------------D----QRPFTGHTKSVEDLQWSPTEDG 271 (440)
T ss_pred CccccceEeeeeccCceee----------------------------------c----CccccccccchhhhccCCccCc
Confidence 8888999999887776432 1 12467899999999999975 5
Q ss_pred EEEEEeCCCcEEEEeCCCC---eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC---CeEEE
Q 008467 413 LLASCSDDVTAKIWNMKQD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL---GKLLY 486 (564)
Q Consensus 413 ~las~s~dg~i~iwd~~~~---~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~---~~~~~ 486 (564)
.|||||.||+|+|||++.+ .++ ..++|.+.|..|.|+..-. +||+|+.||+++|||++. ++++.
T Consensus 272 vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~---------lLasG~DdGt~~iwDLR~~~~~~pVA 341 (440)
T KOG0302|consen 272 VFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREP---------LLASGGDDGTLSIWDLRQFKSGQPVA 341 (440)
T ss_pred eEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcc---------eeeecCCCceEEEEEhhhccCCCcce
Confidence 7899999999999999987 333 3488999999999986542 799999999999999984 67889
Q ss_pred EEeCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCe-------------------EEEEEecCCCEEEEEEccCCC
Q 008467 487 SLNGHREPVYSLAFSPT-GEYLASGSLDKSMHIWSLKEGK-------------------IVKTYTGNGGIFEVCWNKEGD 546 (564)
Q Consensus 487 ~~~~h~~~i~~~~~spd-g~~lasgs~dg~i~iw~~~~~~-------------------~~~~~~~~~~i~~~~w~~~g~ 546 (564)
.++-|..||++|.|+|. ...|+++|.|.+|.|||+.--. ++....+...+-+|.|++.-.
T Consensus 342 ~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiP 421 (440)
T KOG0302|consen 342 TFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIP 421 (440)
T ss_pred eEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCC
Confidence 99999999999999996 4678888999999999985211 222333444567899999864
Q ss_pred -EEEEEEcCCcEEEE
Q 008467 547 -KIAACFANHTVCVL 560 (564)
Q Consensus 547 -~la~~~~~~~v~v~ 560 (564)
+|++...+| ++||
T Consensus 422 G~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 422 GLLVSTAIDG-FNVF 435 (440)
T ss_pred CeEEEecccc-eeEE
Confidence 555555665 4444
No 144
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=9.6e-22 Score=184.60 Aligned_cols=284 Identities=17% Similarity=0.257 Sum_probs=217.8
Q ss_pred ccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC-EEEEEe
Q 008467 216 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT-LLATGS 294 (564)
Q Consensus 216 ~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~l~sg~ 294 (564)
.+.|+++.|||...+|++|+.|++++||.+.. +.+. .+..+.+ ...+|.+.+|.|+|. .+++++
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDG-k~N~-----~lqS~~l---------~~fPi~~a~f~p~G~~~i~~s~ 277 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDG-KVNP-----KLQSIHL---------EKFPIQKAEFAPNGHSVIFTSG 277 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecC-ccCh-----hheeeee---------ccCccceeeecCCCceEEEecc
Confidence 36899999999999999999999999999853 2221 1111111 245799999999999 899999
Q ss_pred CCCeEEEEECCCceeE---eecCCC-CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC-C
Q 008467 295 YDGQARIWSTNGDLKC---TLSKHK-GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-N 369 (564)
Q Consensus 295 ~dg~i~vw~~~~~~~~---~~~~h~-~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~ 369 (564)
.....+.||+...... .+.++. ..+.....+|++++|+..+..|-|.+-...+++++..+... +.+.++.|.. .
T Consensus 278 rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie-G~v~~~~fsSds 356 (514)
T KOG2055|consen 278 RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE-GVVSDFTFSSDS 356 (514)
T ss_pred cceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec-cEEeeEEEecCC
Confidence 9999999998643322 233443 34566777999999999999999999999999988877653 4566777754 4
Q ss_pred ceEEEEeCCCeEEEEEcCCCceeeEecCCCc-ceEEEEECCCCCEEEEEeCCCcEEEEeCCC------Ceeeeecccccc
Q 008467 370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQ------DKYVHDLREHSK 442 (564)
Q Consensus 370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~-~i~~v~~~~~~~~las~s~dg~i~iwd~~~------~~~~~~~~~~~~ 442 (564)
..+++++.+|.|++|++.....+..|....+ .-++++.++++.+||+||+.|.|.|||.++ .+++..+..-..
T Consensus 357 k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt 436 (514)
T KOG2055|consen 357 KELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTT 436 (514)
T ss_pred cEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhe
Confidence 5678888999999999999988888764322 235788889999999999999999999653 355666666677
Q ss_pred cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008467 443 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN---GHREPVYSLAFSPTGEYLASGSLDKSMHIW 519 (564)
Q Consensus 443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~i~~~~~spdg~~lasgs~dg~i~iw 519 (564)
.|.++.|+|+... +.++|-..+..+|+-.+.+......+. ..-+.|+|++|||.|.+||.|..+|+|.+|
T Consensus 437 ~Itsl~Fn~d~qi-------LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~ 509 (514)
T KOG2055|consen 437 AITSLQFNHDAQI-------LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLF 509 (514)
T ss_pred eeeeeeeCcchhh-------hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeE
Confidence 8999999998751 234444567889998887655433332 223458999999999999999999999999
Q ss_pred eCC
Q 008467 520 SLK 522 (564)
Q Consensus 520 ~~~ 522 (564)
.+.
T Consensus 510 kL~ 512 (514)
T KOG2055|consen 510 KLH 512 (514)
T ss_pred eec
Confidence 874
No 145
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.90 E-value=5.9e-22 Score=183.33 Aligned_cols=294 Identities=21% Similarity=0.408 Sum_probs=189.3
Q ss_pred cceEEEEECCCCC-EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 008467 217 SEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 295 (564)
Q Consensus 217 ~~V~~~~~sp~~~-~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~ 295 (564)
.+|..+.|.++.. .||||+.|..||||.+..+...+.. ..+.. ......|...|+++.|+|+|++||+|+.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----~~V~y----~s~Ls~H~~aVN~vRf~p~gelLASg~D 85 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----MKVEY----LSSLSRHTRAVNVVRFSPDGELLASGGD 85 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----eeEEE----eecccCCcceeEEEEEcCCcCeeeecCC
Confidence 5789999999865 9999999999999998765433211 11111 1223456788999999999999999999
Q ss_pred CCeEEEEECC--------C---------ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecc
Q 008467 296 DGQARIWSTN--------G---------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 358 (564)
Q Consensus 296 dg~i~vw~~~--------~---------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 358 (564)
+|.+.+|... . ..+..+.+|...|+.++|+|++.++++++.|.++++||+..|.....+..|.
T Consensus 86 ~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~ 165 (434)
T KOG1009|consen 86 GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHE 165 (434)
T ss_pred CceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccc
Confidence 9999999754 2 1345678899999999999999999999999999999999987766655555
Q ss_pred cCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecc
Q 008467 359 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 438 (564)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~ 438 (564)
..+..++| .|-++++++-|.|...+.++++..+.++...
T Consensus 166 ~yvqgvaw-----------------------------------------Dpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~ 204 (434)
T KOG1009|consen 166 HYVQGVAW-----------------------------------------DPLNQYVASKSSDRHPEGFSAKLKQVIKRHG 204 (434)
T ss_pred cccceeec-----------------------------------------chhhhhhhhhccCcccceeeeeeeeeeeeee
Confidence 55555555 4444444444444433333322211111000
Q ss_pred -------------------ccc----ccEEEEEEccCCCCCCCCCCcEEEEEEe--CCCeEEEEeCC-CCeEEEEEeCCC
Q 008467 439 -------------------EHS----KEIYTIRWSPTGSGTNNPNQQLILASAS--FDSTVKLWDVE-LGKLLYSLNGHR 492 (564)
Q Consensus 439 -------------------~~~----~~i~~i~~~p~~~~~~~~~~~~~l~s~s--~dg~i~iwd~~-~~~~~~~~~~h~ 492 (564)
.|. .-...++|+|+|.....|.+. +-++. .-++.++++-. ..++...+.+-.
T Consensus 205 ~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~--~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~ 282 (434)
T KOG1009|consen 205 LDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL--FKVGGGVFRNTSYVFSRKDLKRPAARLPSPK 282 (434)
T ss_pred eeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce--eeeCCceeeceeEeeccccccCceeecCCCC
Confidence 011 112446777877522222110 00000 01223344322 123344455555
Q ss_pred CCEEEEEEcC------------------CCCEEEEEeCCCcEEEEeCCCCeEEEEEe--cCCCEEEEEEccCCCEEEEEE
Q 008467 493 EPVYSLAFSP------------------TGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIAACF 552 (564)
Q Consensus 493 ~~i~~~~~sp------------------dg~~lasgs~dg~i~iw~~~~~~~~~~~~--~~~~i~~~~w~~~g~~la~~~ 552 (564)
.+...+.|+| -+-.+|.++.+ .|+|||.++-..+.... +-..|++++|++||+.|++.+
T Consensus 283 k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS 361 (434)
T KOG1009|consen 283 KPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSS 361 (434)
T ss_pred cceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEec
Confidence 5666666654 23345666655 59999998766544432 235799999999999999999
Q ss_pred cCCcEEEEEe
Q 008467 553 ANHTVCVLDF 562 (564)
Q Consensus 553 ~~~~v~v~~~ 562 (564)
.||.+.++.|
T Consensus 362 ~DGyCS~vtf 371 (434)
T KOG1009|consen 362 TDGFCSLVTF 371 (434)
T ss_pred cCCceEEEEE
Confidence 9998887765
No 146
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=7.3e-22 Score=185.24 Aligned_cols=288 Identities=19% Similarity=0.310 Sum_probs=211.0
Q ss_pred EccCCccceEEEEECCCC--CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-CC
Q 008467 211 ILEGHTSEVCACAWSPAG--SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EG 287 (564)
Q Consensus 211 ~l~~h~~~V~~~~~sp~~--~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g 287 (564)
+.+-|..+|++++|+|.. +++|+|..-|.|-+||+.+..... .-.. ...+|+.+|.++.|+| +-
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~-------d~v~------~f~~hs~~Vs~l~F~P~n~ 247 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK-------DGVY------LFTPHSGPVSGLKFSPANT 247 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc-------CceE------EeccCCccccceEecCCCh
Confidence 445688999999999974 689999999999999995221110 0001 1235678999999999 45
Q ss_pred CEEEEEeCCCeEEEEECCCceeE---eecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEE
Q 008467 288 TLLATGSYDGQARIWSTNGDLKC---TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 364 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~~~~~~---~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 364 (564)
..+++.++||+||+-|.++.... .+..-...+.++.|+.+...++.+..=|...+||++++.-
T Consensus 248 s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s-------------- 313 (498)
T KOG4328|consen 248 SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS-------------- 313 (498)
T ss_pred hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc--------------
Confidence 68999999999999998765433 2222344566778888887788887777888999877531
Q ss_pred EcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCe----eeeeccc
Q 008467 365 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDK----YVHDLRE 439 (564)
Q Consensus 365 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~las~s~dg~i~iwd~~~~~----~~~~~~~ 439 (564)
....+.-|...|++++++|... +|||||.|++++|||++.-. ++.....
T Consensus 314 --------------------------~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~ 367 (498)
T KOG4328|consen 314 --------------------------EYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLP 367 (498)
T ss_pred --------------------------cchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccc
Confidence 1122344777899999999765 58999999999999987532 2334457
Q ss_pred ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC----CCeEEEEEeCCC------CCEEEEEEcCCCCEEEE
Q 008467 440 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE----LGKLLYSLNGHR------EPVYSLAFSPTGEYLAS 509 (564)
Q Consensus 440 ~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~----~~~~~~~~~~h~------~~i~~~~~spdg~~las 509 (564)
|...|.+..|+|.+. .|++.+.|..|+|||.. ....+.++. |. -......|.|+..++++
T Consensus 368 HrrsV~sAyFSPs~g---------tl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~v 437 (498)
T KOG4328|consen 368 HRRSVNSAYFSPSGG---------TLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVV 437 (498)
T ss_pred ccceeeeeEEcCCCC---------ceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEE
Confidence 999999999999875 48888999999999983 222233332 21 12456789999999999
Q ss_pred EeCCCcEEEEeCCCCeEEEEEecCC--CEEE-EEEccCCC-EEEEEEcCCcEEEEE
Q 008467 510 GSLDKSMHIWSLKEGKIVKTYTGNG--GIFE-VCWNKEGD-KIAACFANHTVCVLD 561 (564)
Q Consensus 510 gs~dg~i~iw~~~~~~~~~~~~~~~--~i~~-~~w~~~g~-~la~~~~~~~v~v~~ 561 (564)
|-.-..|-|+|-..++++..+-... .|.+ ..|+|-+. .+|.+...|.|.||-
T Consensus 438 g~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 438 GRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred eccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 9999999999999999888764332 3443 57999998 555556677777773
No 147
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.90 E-value=1.7e-21 Score=175.46 Aligned_cols=297 Identities=20% Similarity=0.398 Sum_probs=207.0
Q ss_pred eEccCCccceEEEEECC----C-CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEEC
Q 008467 210 TILEGHTSEVCACAWSP----A-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 284 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp----~-~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s 284 (564)
.+...|+.+|+.++|++ + -..+||.| ...+.||...... ....++.... ..+......++|+
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~----------~ir~lq~y~D--~d~~Esfytcsw~ 98 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDG----------GIRLLQSYAD--EDHDESFYTCSWS 98 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCcc----------ceeeeeeccC--CCCCcceEEEEEE
Confidence 46678999999999996 2 24666655 4578888865321 0111111111 1233456777887
Q ss_pred CC----CCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCcceeEEEeecc
Q 008467 285 GE----GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 358 (564)
Q Consensus 285 ~~----g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 358 (564)
-+ ..++|.|+.-|.|||.|.. ++....+.+|..+|..++++|.. ++++++|.|.+|++|++++..++..|.
T Consensus 99 yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG--- 175 (385)
T KOG1034|consen 99 YDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG--- 175 (385)
T ss_pred ecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec---
Confidence 54 3578899999999999975 56667889999999999999976 678999999999999999987665442
Q ss_pred cCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecc
Q 008467 359 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 438 (564)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~ 438 (564)
-+.||.+.|.++.|+++|.+|+||+.|.++++|++...+.-..+.
T Consensus 176 -----------------------------------G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE 220 (385)
T KOG1034|consen 176 -----------------------------------GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLE 220 (385)
T ss_pred -----------------------------------ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhh
Confidence 246899999999999999999999999999999997443211110
Q ss_pred cccccEEEEEEccCCCCC-------CCCC-------C---------cEEEEEEeCCCeEEEEeC-CCCe-----------
Q 008467 439 EHSKEIYTIRWSPTGSGT-------NNPN-------Q---------QLILASASFDSTVKLWDV-ELGK----------- 483 (564)
Q Consensus 439 ~~~~~i~~i~~~p~~~~~-------~~~~-------~---------~~~l~s~s~dg~i~iwd~-~~~~----------- 483 (564)
.++.|+|++... .-|. . -.+++|-|.++.|..|.. +-++
T Consensus 221 ------~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~ 294 (385)
T KOG1034|consen 221 ------LSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESA 294 (385)
T ss_pred ------hhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccc
Confidence 112222222110 0000 0 015778888999999987 2111
Q ss_pred --EEEEEeCCCCCEEEEE--EcCCCCEEEEEeCCCcEEEEeCCCCeEE--EEEe---cCCCEEEEEEccCCCEEEEEEcC
Q 008467 484 --LLYSLNGHREPVYSLA--FSPTGEYLASGSLDKSMHIWSLKEGKIV--KTYT---GNGGIFEVCWNKEGDKIAACFAN 554 (564)
Q Consensus 484 --~~~~~~~h~~~i~~~~--~spdg~~lasgs~dg~i~iw~~~~~~~~--~~~~---~~~~i~~~~w~~~g~~la~~~~~ 554 (564)
.+.++.-....|+-|. |.|-+++||.|...|.|.+||++..... .++. ....|...+|+.||..|++...+
T Consensus 295 ~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd 374 (385)
T KOG1034|consen 295 TTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDD 374 (385)
T ss_pred eeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCC
Confidence 1223333334566665 5566899999999999999999876542 1222 23458899999999999999999
Q ss_pred CcEEEEEee
Q 008467 555 HTVCVLDFR 563 (564)
Q Consensus 555 ~~v~v~~~~ 563 (564)
+.|.-||..
T Consensus 375 ~~Vwrwdrv 383 (385)
T KOG1034|consen 375 GTVWRWDRV 383 (385)
T ss_pred CcEEEEEee
Confidence 999988864
No 148
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.90 E-value=3.1e-19 Score=182.71 Aligned_cols=327 Identities=34% Similarity=0.635 Sum_probs=254.2
Q ss_pred EccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEE-CCCCC-
Q 008467 211 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW-NGEGT- 288 (564)
Q Consensus 211 ~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~-s~~g~- 288 (564)
.+.+|...+.++.|++.+..++.++.|+.+.+|+...+.. ......... ...+..+.+ ++++.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~------------~~~~~~~~~---~~~~~~~~~~~~~~~~ 124 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK------------LIKSLEGLH---DSSVSKLALSSPDGNS 124 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce------------eEEEEeccC---CCceeeEEEECCCcce
Confidence 4667899999999999999999999999999999875430 011111100 034666666 88887
Q ss_pred EEEEEeC-CCeEEEEECCC--ceeEeecCCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECCCcceeEEEeecccCeEEE
Q 008467 289 LLATGSY-DGQARIWSTNG--DLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSGPTLDV 364 (564)
Q Consensus 289 ~l~sg~~-dg~i~vw~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 364 (564)
.++..+. |+.+++|+... .....+..|...|..++|+|++.++++++. |+.+++|++..+.....+..|...+..+
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 204 (466)
T COG2319 125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL 204 (466)
T ss_pred EEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEE
Confidence 5555444 99999999885 677788999999999999999998888885 9999999999888888888888999999
Q ss_pred EcCCCc--eEEEEeCCCeEEEEEcCCCceee-EecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee-eeecccc
Q 008467 365 DWRNNV--SFATSSTDNMIYVCKIGENRPIK-TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHDLREH 440 (564)
Q Consensus 365 ~~~~~~--~~~~~~~d~~i~~~~~~~~~~~~-~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~-~~~~~~~ 440 (564)
.|.++. .+++++.|+.+.+|+......+. .+.+|.... ...|+|++.++++++.|+.+++|+...... +..+..|
T Consensus 205 ~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 283 (466)
T COG2319 205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH 283 (466)
T ss_pred EEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC
Confidence 998655 34444899999999888667776 688888875 448999999999999999999999986664 4444678
Q ss_pred cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEE-eCCCcEE
Q 008467 441 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLASG-SLDKSMH 517 (564)
Q Consensus 441 ~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~i~~~~~spdg~~lasg-s~dg~i~ 517 (564)
...+.++.|.|.+. .+++++.|+.+++||........... .|...+..+.|++++..++.+ ..|+.+.
T Consensus 284 ~~~v~~~~~~~~~~---------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 354 (466)
T COG2319 284 SSSVLSVAFSPDGK---------LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354 (466)
T ss_pred CccEEEEEECCCCC---------EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEE
Confidence 88999999998543 45568888999999998887766665 787789999994443566665 6889999
Q ss_pred EEeCCCCeEEEEEecCCCEEEEEEccCCCEEEE-EEcCCcEEEEEee
Q 008467 518 IWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAA-CFANHTVCVLDFR 563 (564)
Q Consensus 518 iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~-~~~~~~v~v~~~~ 563 (564)
+|+...............+..+.|.+ ...+.. +..++.+.+|+.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 400 (466)
T COG2319 355 LWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLS 400 (466)
T ss_pred eeecCCCceeEEecCCceEEEEEECC-CCCEEEEecCCCceEEEecc
Confidence 99998877333333333378999999 544444 6788899999875
No 149
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=6.6e-23 Score=212.51 Aligned_cols=243 Identities=22% Similarity=0.455 Sum_probs=199.2
Q ss_pred CCCeEEEEECCCCCE----EEEEeCCCeEEEEECCC-------ceeEeecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEE
Q 008467 275 SKDVTTLDWNGEGTL----LATGSYDGQARIWSTNG-------DLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIV 342 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~----l~sg~~dg~i~vw~~~~-------~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~i 342 (564)
......|+|.+.|.. ||.|..||.|.+|+... ..+.+...|+++|.+|.|++... .|++|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 345788999987765 89999999999999653 23456788999999999999765 8999999999999
Q ss_pred EECCCcceeEEEe--ecccCeEEEEcCCC--ceEEEEeCCCeEEEEEcCCCceeeEecCCCc--ceEEEEECCCC-CEEE
Q 008467 343 WDVKTEEWKQQFE--FHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGHQG--EVNCVKWDPTG-SLLA 415 (564)
Q Consensus 343 wd~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~--~i~~v~~~~~~-~~la 415 (564)
||+..-+..-.+. .....|..+.|... ..|++++.++.+.+||++..+++..+..|.+ .+..++|+|+. ..|+
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 9998643322221 12345788899754 4678889999999999999999988877665 47789999987 4466
Q ss_pred EEeCCC---cEEEEeCCCC-eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC
Q 008467 416 SCSDDV---TAKIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 491 (564)
Q Consensus 416 s~s~dg---~i~iwd~~~~-~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h 491 (564)
++++|. .|.+||++.- .+++.+..|...|.++.|++.+. .+|+|++.|+.|.+|+..+++.+..+...
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~--------~lllSsgkD~~ii~wN~~tgEvl~~~p~~ 295 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDP--------RLLLSSGKDNRIICWNPNTGEVLGELPAQ 295 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCc--------hhhhcccCCCCeeEecCCCceEeeecCCC
Confidence 676654 6899998753 45677889999999999998763 37899999999999999999999999887
Q ss_pred CCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCe
Q 008467 492 REPVYSLAFSPTGE-YLASGSLDKSMHIWSLKEGK 525 (564)
Q Consensus 492 ~~~i~~~~~spdg~-~lasgs~dg~i~iw~~~~~~ 525 (564)
...+..+.|+|... .+++++.||.|-||.+..+.
T Consensus 296 ~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 296 GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 88999999999875 78899999999999997654
No 150
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=3.3e-21 Score=173.28 Aligned_cols=281 Identities=25% Similarity=0.439 Sum_probs=203.8
Q ss_pred EEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEEC-------CCCCEEEE
Q 008467 220 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN-------GEGTLLAT 292 (564)
Q Consensus 220 ~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s-------~~g~~l~s 292 (564)
..|.|||||+.|++-+.|..+++|++........+ ..+... ..+..-+ ......|...+|- |+..++++
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~-~~~~~~--~~~~~~r-~~eg~tvydy~wYs~M~s~qP~t~l~a~ 128 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA-DGPLNF--SKHLSYR-YQEGETVYDYCWYSRMKSDQPSTNLFAV 128 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCC-CCcccc--ccceeEE-eccCCEEEEEEeeeccccCCCccceeee
Confidence 36899999999999999999999998653221111 111110 0010001 1123457788885 67889999
Q ss_pred EeCCCeEEEEEC-CCceeEeecC--CCC---CEEEEEeCCCCCEEEEeeCCCcEEEEEC-CCcceeEEE---ee----cc
Q 008467 293 GSYDGQARIWST-NGDLKCTLSK--HKG---PIFSLKWNKKGDYLLTGSCDKTAIVWDV-KTEEWKQQF---EF----HS 358 (564)
Q Consensus 293 g~~dg~i~vw~~-~~~~~~~~~~--h~~---~V~~l~~~~~~~~l~s~s~D~~v~iwd~-~~~~~~~~~---~~----~~ 358 (564)
.+.+.-|++||. .|++++.+.. |.. +..+|+|+|+|.+|++|. .++|+++|+ +.|..-..+ .. ..
T Consensus 129 ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred ccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccc
Confidence 999999999995 5777776654 333 347899999999998764 579999998 555322211 11 12
Q ss_pred cCeEEEEcC--CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCe-ee
Q 008467 359 GPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDK-YV 434 (564)
Q Consensus 359 ~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg~i~iwd~~~~~-~~ 434 (564)
+.+.++.+. +...++.++-...+-++.-....|+..+-||.+.|+.++|.++|+.|.+|+. |-.|.+||++..+ ++
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV 287 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence 233344443 4456777777788888888888999999999999999999999999999986 7899999998643 45
Q ss_pred eecccccc-cEEEEEEc--cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 008467 435 HDLREHSK-EIYTIRWS--PTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTGEYLASG 510 (564)
Q Consensus 435 ~~~~~~~~-~i~~i~~~--p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~i~~~~~spdg~~lasg 510 (564)
..+..|.. .-..|-|. |.+. +|++|+.||.|++||+.. |..+..+..|...++.++++|--.++|++
T Consensus 288 ~~L~rhv~~TNQRI~FDld~~~~---------~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilats 358 (406)
T KOG2919|consen 288 YALERHVGDTNQRILFDLDPKGE---------ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATS 358 (406)
T ss_pred hhhhhhccCccceEEEecCCCCc---------eeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeec
Confidence 55655654 33445554 3332 799999999999999987 67677788899999999999998888888
Q ss_pred eCCC
Q 008467 511 SLDK 514 (564)
Q Consensus 511 s~dg 514 (564)
+...
T Consensus 359 sGqr 362 (406)
T KOG2919|consen 359 SGQR 362 (406)
T ss_pred cCce
Confidence 7654
No 151
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=5e-21 Score=171.40 Aligned_cols=234 Identities=16% Similarity=0.256 Sum_probs=185.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467 275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 354 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 354 (564)
...|+++.|+|.+..|+.++.||.+++|+.........-.|..|+.+++|.+ ...+++|+.||.|+.+|+.++..
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~---- 87 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE---- 87 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc----
Confidence 4679999999999999999999999999987665544557999999999997 46799999999999999987641
Q ss_pred eecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee
Q 008467 355 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 434 (564)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~ 434 (564)
..+..|...|.|+.+++-...+++||.|++|++||.+....+
T Consensus 88 --------------------------------------~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~ 129 (323)
T KOG1036|consen 88 --------------------------------------DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV 129 (323)
T ss_pred --------------------------------------eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc
Confidence 123458889999999998889999999999999999875555
Q ss_pred eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEEeC
Q 008467 435 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLASGSL 512 (564)
Q Consensus 435 ~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~i~~~~~spdg~~lasgs~ 512 (564)
..+.. ...|+++...-+ .|+.|..|..|.+||+++........ ...-.+.+|++-|++.-.|++|-
T Consensus 130 ~~~d~-~kkVy~~~v~g~-----------~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi 197 (323)
T KOG1036|consen 130 GTFDQ-GKKVYCMDVSGN-----------RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI 197 (323)
T ss_pred ccccc-CceEEEEeccCC-----------EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee
Confidence 44433 347888765432 57888899999999999765544221 22346899999999999999999
Q ss_pred CCcEEEEeCCCC----eEEEEEecC----------CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 513 DKSMHIWSLKEG----KIVKTYTGN----------GGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 513 dg~i~iw~~~~~----~~~~~~~~~----------~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
||+|.+=.+.+. +..-.|..+ -+|++++|+|--..+|+|+.||.|.+||..
T Consensus 198 eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 198 EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLF 262 (323)
T ss_pred cceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCc
Confidence 999987666554 222233321 247899999999999999999999999974
No 152
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=7.4e-22 Score=186.81 Aligned_cols=237 Identities=21% Similarity=0.374 Sum_probs=195.1
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467 217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 296 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 296 (564)
.-|..|..+|||+.|++|+.-.++.|||+...... .+.......-...+++.|||.++.+++..|
T Consensus 466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTpr---------------ikaeltssapaCyALa~spDakvcFsccsd 530 (705)
T KOG0639|consen 466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR---------------IKAELTSSAPACYALAISPDAKVCFSCCSD 530 (705)
T ss_pred cceeeeEecCCCceEEeccccceeeeeeccCCCcc---------------hhhhcCCcchhhhhhhcCCccceeeeeccC
Confidence 34688999999999999999999999999764321 111111122346678999999999999999
Q ss_pred CeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEE
Q 008467 297 GQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS 375 (564)
Q Consensus 297 g~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (564)
|.|+|||... .++..|.+|+..+.||..+++|..|-||+-|++||.||++++...++..
T Consensus 531 GnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-------------------- 590 (705)
T KOG0639|consen 531 GNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-------------------- 590 (705)
T ss_pred CcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh--------------------
Confidence 9999999865 4667899999999999999999999999999999999999875433221
Q ss_pred eCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCC
Q 008467 376 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSG 455 (564)
Q Consensus 376 ~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~ 455 (564)
..+.|.++.++|++.+||.|-+++.+.|-..... ....+..|...|.++.|++.|.
T Consensus 591 ----------------------F~SQIfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGk- 646 (705)
T KOG0639|consen 591 ----------------------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGK- 646 (705)
T ss_pred ----------------------hhhhheecccCCCccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCc-
Confidence 1345778889999999999999998888775433 2345667889999999999986
Q ss_pred CCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467 456 TNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 521 (564)
Q Consensus 456 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~ 521 (564)
++++.+.|+-+..|..--|..++..+ ...+|.+...|-|.+||+|||.|+...+|.+
T Consensus 647 --------wfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 647 --------WFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred --------eeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 78999999999999998888888776 3568999999999999999999998888865
No 153
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.9e-20 Score=167.82 Aligned_cols=277 Identities=16% Similarity=0.299 Sum_probs=196.3
Q ss_pred eEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCe
Q 008467 219 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ 298 (564)
Q Consensus 219 V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~ 298 (564)
..||.||+.|.+||.|..||.+.|||+.+-.. ......|..+|++++||+||+.|+|++.|..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i-----------------ar~lsaH~~pi~sl~WS~dgr~LltsS~D~s 88 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI-----------------ARMLSAHVRPITSLCWSRDGRKLLTSSRDWS 88 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch-----------------hhhhhccccceeEEEecCCCCEeeeecCCce
Confidence 67999999999999999999999999876421 1112345678999999999999999999999
Q ss_pred EEEEECC-CceeEeecCCCCCEEEEEeCCCCCE-EEEeeCCCcEEEEECCCcceeEEEeecccCeE--E---EEc-CCCc
Q 008467 299 ARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL--D---VDW-RNNV 370 (564)
Q Consensus 299 i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~--~---~~~-~~~~ 370 (564)
|.+||+. |.+...+ ...+||+...|+|.... +++.-.+..-.+-++.... ...+......-. . ..+ +...
T Consensus 89 i~lwDl~~gs~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-h~~Lp~d~d~dln~sas~~~fdr~g~ 166 (405)
T KOG1273|consen 89 IKLWDLLKGSPLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-HSVLPKDDDGDLNSSASHGVFDRRGK 166 (405)
T ss_pred eEEEeccCCCceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCc-eeeccCCCccccccccccccccCCCC
Confidence 9999964 5555554 36789999999996643 3333344444444433211 111111110000 0 012 2345
Q ss_pred eEEEEeCCCeEEEEEcCCCceeeEecCCC-cceEEEEECCCCCEEEEEeCCCcEEEEeCCCC------eeeeeccccccc
Q 008467 371 SFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD------KYVHDLREHSKE 443 (564)
Q Consensus 371 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~------~~~~~~~~~~~~ 443 (564)
.++++...|.+.+++..+-+.+..++-.. ..|..+.++..|.+|+.-+.|..||.|+++.- ..+.-......-
T Consensus 167 yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv 246 (405)
T KOG1273|consen 167 YIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV 246 (405)
T ss_pred EEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH
Confidence 67889999999999999888877776555 67889999999999999999999999997521 111100001122
Q ss_pred E-----EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC-CCEEEEEEcCCCCEEEEEeCCCcEE
Q 008467 444 I-----YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-EPVYSLAFSPTGEYLASGSLDKSMH 517 (564)
Q Consensus 444 i-----~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~i~~~~~spdg~~lasgs~dg~i~ 517 (564)
| .+++|+.+| .++.++......++||.-..|.++..+.|.. .....+.|+|-...|++- ..|.|+
T Consensus 247 VNk~~Wk~ccfs~dg--------eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~ 317 (405)
T KOG1273|consen 247 VNKLQWKKCCFSGDG--------EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVY 317 (405)
T ss_pred HhhhhhhheeecCCc--------cEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceE
Confidence 2 344555544 3555555667789999999999999998776 567889999999888887 678999
Q ss_pred EEeCCC
Q 008467 518 IWSLKE 523 (564)
Q Consensus 518 iw~~~~ 523 (564)
||....
T Consensus 318 iw~~~~ 323 (405)
T KOG1273|consen 318 IWAVVQ 323 (405)
T ss_pred EEEeec
Confidence 998753
No 154
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.7e-21 Score=180.90 Aligned_cols=233 Identities=24% Similarity=0.389 Sum_probs=181.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCc---e-------------------eEeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEE
Q 008467 286 EGTLLATGSYDGQARIWSTNGD---L-------------------KCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIV 342 (564)
Q Consensus 286 ~g~~l~sg~~dg~i~vw~~~~~---~-------------------~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~i 342 (564)
.|+++|.|+.|..|.|||+.=. . ...-.+|+..|.+|.|+..- +.|+|||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 4789999999999999986310 0 01123699999999999865 46889999999999
Q ss_pred EECCCcceeEEEeecccCeEEEEcCCC--ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCE-EEEEeC
Q 008467 343 WDVKTEEWKQQFEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSD 419 (564)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~-las~s~ 419 (564)
||+.++++..++..|...+..+.|.+. ..+++++.|+++.+.|.+........-...+.|-.++|+|.... ++++++
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence 999999999999999999999999764 56789999999999998753222111123568899999987654 667789
Q ss_pred CCcEEEEeCCCC-eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEEeCCCCCEE
Q 008467 420 DVTAKIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGHREPVY 496 (564)
Q Consensus 420 dg~i~iwd~~~~-~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~i~ 496 (564)
||+++-+|++.. +++.++++|.++|.+|++++... .+|++++.|+.|++|++..... +..-.-.-+...
T Consensus 351 dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p--------~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~ 422 (463)
T KOG0270|consen 351 DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP--------GLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLH 422 (463)
T ss_pred CceEEeeecCCCCCceeEEEeccCCcceEEecCCCC--------cceeeccccceEEEEeecCCCCccccccccccccee
Confidence 999999999876 88999999999999999987654 3799999999999999864332 221111112356
Q ss_pred EEEEcCCC-CEEEEEeCCCcEEEEeCCCCeE
Q 008467 497 SLAFSPTG-EYLASGSLDKSMHIWSLKEGKI 526 (564)
Q Consensus 497 ~~~~spdg-~~lasgs~dg~i~iw~~~~~~~ 526 (564)
|.++.|+- -+||.||..+.++|||+.+...
T Consensus 423 c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 423 CFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred ecccCCCcceEEEecCccceEEEeecccChh
Confidence 77788875 4578888888999999987654
No 155
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.9e-20 Score=175.32 Aligned_cols=236 Identities=20% Similarity=0.349 Sum_probs=181.2
Q ss_pred EEEEeCC-------CCCEEEEeeCCCcEEEEECCCccee-E--------------------EEeecccCeEEEEcCC--C
Q 008467 320 FSLKWNK-------KGDYLLTGSCDKTAIVWDVKTEEWK-Q--------------------QFEFHSGPTLDVDWRN--N 369 (564)
Q Consensus 320 ~~l~~~~-------~~~~l~s~s~D~~v~iwd~~~~~~~-~--------------------~~~~~~~~~~~~~~~~--~ 369 (564)
.|+.|.. .|++++.|..|..|.|||+.-...+ . .-..|+..++.+.|.. .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 5667743 3689999999999999997522110 0 1124556667777754 3
Q ss_pred ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEE
Q 008467 370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 448 (564)
Q Consensus 370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~ 448 (564)
..+++++.|.+|.+||+.+++|..++..|.+.|.+++|+|. ...|++||.|+++++.|.+........-...+.|-.++
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~ 336 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA 336 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence 56899999999999999999999999999999999999986 46789999999999999984322211122356788899
Q ss_pred EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEEeCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCC--C
Q 008467 449 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKE--G 524 (564)
Q Consensus 449 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~spdg-~~lasgs~dg~i~iw~~~~--~ 524 (564)
|.|... ..++++..||+|+-+|+|+. ++++++..|..+|.+|++++.- .+|+|+|.|+.|++|++.. .
T Consensus 337 w~~~se--------~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 337 WDPHSE--------NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred ecCCCc--------eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 988653 46778899999999999974 8999999999999999999865 5789999999999999864 3
Q ss_pred eEEEEEecC-CCEEEEEEccCC-CEEEEEEcCCcEEEEEee
Q 008467 525 KIVKTYTGN-GGIFEVCWNKEG-DKIAACFANHTVCVLDFR 563 (564)
Q Consensus 525 ~~~~~~~~~-~~i~~~~w~~~g-~~la~~~~~~~v~v~~~~ 563 (564)
+.++.-.-. +...+++..|+- -.||+|+.++.++|||+-
T Consensus 409 ~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 409 KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred cccccccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence 333332222 234566777765 378888888889999863
No 156
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.6e-21 Score=186.21 Aligned_cols=264 Identities=22% Similarity=0.344 Sum_probs=191.7
Q ss_pred eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467 210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 289 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 289 (564)
.++..|.+.|.+++|+|....|++++.||++++|.++..... . ...+..+..+ ..|..+|.|++.++++..
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s--~---~~~~epi~tf----raH~gPVl~v~v~~n~~~ 358 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS--A---EKDVEPILTF----RAHEGPVLCVVVPSNGEH 358 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc--c---ccceeeeEEE----ecccCceEEEEecCCceE
Confidence 378899999999999999999999999999999999542111 1 1111122222 245789999999999999
Q ss_pred EEEEeCCCeEEEEECCC-----------ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeec-
Q 008467 290 LATGSYDGQARIWSTNG-----------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH- 357 (564)
Q Consensus 290 l~sg~~dg~i~vw~~~~-----------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~- 357 (564)
+.+|+-||+|+.|++.. .+...+.+|++.|+.+++|+...+|+++|.||++++|+...... ..|...
T Consensus 359 ~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~ 437 (577)
T KOG0642|consen 359 CYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPK 437 (577)
T ss_pred EEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCcc
Confidence 99999999999996421 23456789999999999999999999999999999999765544 222111
Q ss_pred -ccCeEEEEcCCCc--eEEEEeCCCeEEEEEcCCCceeeEecC-------CCcceEEEEECCCCCEEEEEeCCCcEEEEe
Q 008467 358 -SGPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRPIKTFAG-------HQGEVNCVKWDPTGSLLASCSDDVTAKIWN 427 (564)
Q Consensus 358 -~~~~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~~~~~~~~-------h~~~i~~v~~~~~~~~las~s~dg~i~iwd 427 (564)
.+..+.+++.... ..+++..-+.--+.+......++.+.. ....++.+.++|.+.+.+++..|+.|+++|
T Consensus 438 e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~d 517 (577)
T KOG0642|consen 438 EHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFD 517 (577)
T ss_pred ccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccc
Confidence 1112233322111 011111111111112222222222221 123577899999999999999999999999
Q ss_pred CCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC
Q 008467 428 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR 492 (564)
Q Consensus 428 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~ 492 (564)
..++.+++....|...++++++.|+|. +|++++.||.|++|.+....++.....|+
T Consensus 518 n~~~~~l~s~~a~~~svtslai~~ng~---------~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 518 NKTGKILHSMVAHKDSVTSLAIDPNGP---------YLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred ccccccchheeeccceecceeecCCCc---------eEEeecCCceeehhhccchheeecccccc
Confidence 999999999999999999999999886 89999999999999998888877766665
No 157
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.87 E-value=1.1e-20 Score=180.46 Aligned_cols=271 Identities=18% Similarity=0.293 Sum_probs=197.4
Q ss_pred CccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 008467 215 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 294 (564)
Q Consensus 215 h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~ 294 (564)
|..-|.||.|+.....+.+++.+..++-|++.+.... .....+-......+..+..... -.....|+.++
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~-~~~~p~df~pt~~h~~~rs~~~---------g~~~d~~~i~s 82 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVE-VAKLPDDFVPTDMHLGGRSSGG---------GKGSDTLLICS 82 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeecccchhhh-hhhCCcccCCccccccccccCC---------CCCcceEEEEc
Confidence 5566789999988888877766666666666543210 0000000000001111111100 01235688899
Q ss_pred CCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEE
Q 008467 295 YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT 374 (564)
Q Consensus 295 ~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (564)
.||.+.+-+..++....+..|.++|.+-+|+|+|.-|++++.||.|++|. ++|-+..++.....++.++.|.++..-+.
T Consensus 83 ~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl 161 (737)
T KOG1524|consen 83 NDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIV 161 (737)
T ss_pred CCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceE
Confidence 99999999999999889999999999999999999999999999999998 55555555555667899999987765544
Q ss_pred EeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCC
Q 008467 375 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 454 (564)
Q Consensus 375 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~ 454 (564)
-...+.+++-.+..+..+..++.|.+-|.|+.|++...+++||++|-..+|||.. +..+..-..|.-+|++++|.|+.
T Consensus 162 ~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~- 239 (737)
T KOG1524|consen 162 FCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEK- 239 (737)
T ss_pred EecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeecccc-
Confidence 4556667776777666677889999999999999999999999999999999965 44555567789999999999973
Q ss_pred CCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008467 455 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW 519 (564)
Q Consensus 455 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw 519 (564)
.++.+|.+ ++|+= ....+.|..++|||||..++.|...|.+.+=
T Consensus 240 ---------~~~v~S~n-t~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 240 ---------DYLLWSYN-TARFS-----------SPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ---------ceeeeeee-eeeec-----------CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 45566643 34411 1234679999999999999999999877543
No 158
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=1.5e-20 Score=176.46 Aligned_cols=242 Identities=21% Similarity=0.334 Sum_probs=185.9
Q ss_pred CCCCeEEEEECCCC--CEEEEEeCCCeEEEEECCCc-----eeEeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEEC
Q 008467 274 KSKDVTTLDWNGEG--TLLATGSYDGQARIWSTNGD-----LKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDV 345 (564)
Q Consensus 274 ~~~~V~~l~~s~~g--~~l~sg~~dg~i~vw~~~~~-----~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~ 345 (564)
....|++++|+|.. +++|+|..-|+|-+|+..++ -...+..|.++|.+|.|+|.+ .++++.|.||+|++-|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence 45779999999954 58889999999999998532 345678899999999999966 57999999999999998
Q ss_pred CCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEE
Q 008467 346 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 425 (564)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~i 425 (564)
++......+. +......+..+.|+.+...++.+..=|...+
T Consensus 265 ~~~i~e~v~s---------------------------------------~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~ 305 (498)
T KOG4328|consen 265 EGNISEEVLS---------------------------------------LDTDNIWFSSLDFSAESRSVLFGDNVGNFNV 305 (498)
T ss_pred cchhhHHHhh---------------------------------------cCccceeeeeccccCCCccEEEeecccceEE
Confidence 7653221110 0011223456777777777788888789999
Q ss_pred EeCCCCee-eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe----EEEEEeCCCCCEEEEEE
Q 008467 426 WNMKQDKY-VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK----LLYSLNGHREPVYSLAF 500 (564)
Q Consensus 426 wd~~~~~~-~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~h~~~i~~~~~ 500 (564)
||.++.+. ...++-|...|.++++.|... .+|||||.|++++|||++.-. .+.....|+.+|.++.|
T Consensus 306 iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p--------~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyF 377 (498)
T KOG4328|consen 306 IDLRTDGSEYENLRLHKKKITSVALNPVCP--------WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYF 377 (498)
T ss_pred EEeecCCccchhhhhhhcccceeecCCCCc--------hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEE
Confidence 99998765 566778889999999988654 489999999999999998522 22344569999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCC----CCeEEEEEecCC------CEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 501 SPTGEYLASGSLDKSMHIWSLK----EGKIVKTYTGNG------GIFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 501 spdg~~lasgs~dg~i~iw~~~----~~~~~~~~~~~~------~i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
||+|-.|+|.+.|..|+|||.. .-....+..++. ..+-..|+|+-+++++|-.-..|-|||-
T Consensus 378 SPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~ 449 (498)
T KOG4328|consen 378 SPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG 449 (498)
T ss_pred cCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcC
Confidence 9998889999999999999984 223333333321 2456789999999999977777888863
No 159
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=2.2e-20 Score=182.02 Aligned_cols=267 Identities=23% Similarity=0.330 Sum_probs=193.8
Q ss_pred CCEEEEEeCCCeEEEEECCCc-------eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE--Eeec
Q 008467 287 GTLLATGSYDGQARIWSTNGD-------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ--FEFH 357 (564)
Q Consensus 287 g~~l~sg~~dg~i~vw~~~~~-------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~~ 357 (564)
...|+.+..||.|.+++.... .......|.+.|+.+.|-|....|++++.|.++++||+++..+... +..|
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH 143 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH 143 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc
Confidence 457899999999999996532 1234568999999999999777899999999999999999888776 7888
Q ss_pred ccCeEEEEcC--CCceEEEEeCCCeEEEEEcCCCc--------------------ee-------eEecCCCcceEE---E
Q 008467 358 SGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENR--------------------PI-------KTFAGHQGEVNC---V 405 (564)
Q Consensus 358 ~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~--------------------~~-------~~~~~h~~~i~~---v 405 (564)
.+.+-.+++. +...|++++.||.|.+||+.... |. .....|.+.|.+ +
T Consensus 144 ~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTv 223 (720)
T KOG0321|consen 144 TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTV 223 (720)
T ss_pred ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEE
Confidence 8888877775 55789999999999999986432 11 112234444544 5
Q ss_pred EECCCCCEEEEEeC-CCcEEEEeCCCCeeeee--------cccc---cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCe
Q 008467 406 KWDPTGSLLASCSD-DVTAKIWNMKQDKYVHD--------LREH---SKEIYTIRWSPTGSGTNNPNQQLILASASFDST 473 (564)
Q Consensus 406 ~~~~~~~~las~s~-dg~i~iwd~~~~~~~~~--------~~~~---~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~ 473 (564)
-+..|...||+++. |+.|+|||++....... +..| .-.+.++.....|. .++|+|. |++
T Consensus 224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt--------~L~AsCt-D~s 294 (720)
T KOG0321|consen 224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT--------YLFASCT-DNS 294 (720)
T ss_pred EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC--------eEEEEec-CCc
Confidence 56678899999998 99999999986543221 1122 11234444433332 4566655 999
Q ss_pred EEEEeCCCC--eEEEEEeCCCCCE--EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE-EEEEecCC-CEEEEEEccCC-C
Q 008467 474 VKLWDVELG--KLLYSLNGHREPV--YSLAFSPTGEYLASGSLDKSMHIWSLKEGKI-VKTYTGNG-GIFEVCWNKEG-D 546 (564)
Q Consensus 474 i~iwd~~~~--~~~~~~~~h~~~i--~~~~~spdg~~lasgs~dg~i~iw~~~~~~~-~~~~~~~~-~i~~~~w~~~g-~ 546 (564)
|.+||+..- ..+..+.++...- ..-..|||+.+|++|+.|...+||.+.+-+. +..+.++. .|+.++|.|.- .
T Consensus 295 Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t 374 (720)
T KOG0321|consen 295 IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATT 374 (720)
T ss_pred EEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCC
Confidence 999999753 3345555543221 1234789999999999999999999987553 22233332 48899999965 5
Q ss_pred EEEEEEcCCcEEEEEe
Q 008467 547 KIAACFANHTVCVLDF 562 (564)
Q Consensus 547 ~la~~~~~~~v~v~~~ 562 (564)
.+|+|+.|-++.||++
T Consensus 375 ~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 375 PVATCSDDFRVKIWRL 390 (720)
T ss_pred CceeeccCcceEEEec
Confidence 8888899999999986
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=7.2e-18 Score=172.60 Aligned_cols=327 Identities=29% Similarity=0.577 Sum_probs=249.6
Q ss_pred eeEccCCc-cceEEEEE-CCCCC-EEEEEEC-CCcEEEEeCCC-CCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEE
Q 008467 209 VTILEGHT-SEVCACAW-SPAGS-LLASGSG-DSTARIWTIAD-GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 283 (564)
Q Consensus 209 ~~~l~~h~-~~V~~~~~-sp~~~-~lasgs~-D~~i~iW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~ 283 (564)
...+.++. ..+..+.+ ++++. +++..+. |+.+++|++.. .. ... ....+...|..++|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-------------~~~----~~~~~~~~v~~~~~ 163 (466)
T COG2319 101 IKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK-------------LIR----TLEGHSESVTSLAF 163 (466)
T ss_pred EEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCe-------------EEE----EEecCcccEEEEEE
Confidence 34444433 36666666 88887 5555454 99999999865 11 011 11234567889999
Q ss_pred CCCCCEEEEEeC-CCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCcceeE-EEeeccc
Q 008467 284 NGEGTLLATGSY-DGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQ-QFEFHSG 359 (564)
Q Consensus 284 s~~g~~l~sg~~-dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~ 359 (564)
+|++..+++++. |+.+++|+... .....+..|...|.+++|+|++. .+++++.|+++++||...+.... .+..|..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 243 (466)
T COG2319 164 SPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD 243 (466)
T ss_pred CCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc
Confidence 999999999885 99999999874 66777888999999999999998 55666999999999988777777 5666666
Q ss_pred CeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCce-eeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeec
Q 008467 360 PTLDVDWRNN-VSFATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 437 (564)
Q Consensus 360 ~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~-~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~ 437 (564)
.. ...|..+ ..+++++.|+.+++|+...... +..+.+|...+.++.|+|++..+++++.|+.+++|+..+.......
T Consensus 244 ~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 322 (466)
T COG2319 244 SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL 322 (466)
T ss_pred ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEe
Confidence 54 2245444 4677899999999999986664 5555788899999999999888888999999999999888766665
Q ss_pred c--cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE-EeCCC
Q 008467 438 R--EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS-GSLDK 514 (564)
Q Consensus 438 ~--~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~las-gs~dg 514 (564)
. .|...+..+.| +.. ...+..++..|+.+++|++............ ..+..+.+++ ...+.. ++.++
T Consensus 323 ~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~ 392 (466)
T COG2319 323 TLKGHEGPVSSLSF-SPD-------GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-DGRVVSSGSTDG 392 (466)
T ss_pred eecccCCceEEEEE-CCC-------CCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-CCCEEEEecCCC
Confidence 5 77777899998 522 0124444468899999999877733333322 2388999999 544444 78899
Q ss_pred cEEEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 515 SMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 515 ~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
.+.+|+............. ..+....+++++..++.+..++.+.+|+..
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 393 TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442 (466)
T ss_pred ceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence 9999999998887777666 789999999999999999899999999864
No 161
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=7.3e-20 Score=178.87 Aligned_cols=275 Identities=19% Similarity=0.336 Sum_probs=204.1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467 276 KDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 354 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 354 (564)
..|..++|-|||..|+.+.. ..+.+||++ |.+..++.+|+..|++++|+.+|+.++||++|+.|.+|+.+-....+
T Consensus 13 hci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk-- 89 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK-- 89 (1081)
T ss_pred cchheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee--
Confidence 36899999999999888765 478899975 77888999999999999999999999999999999999865433222
Q ss_pred eecccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 008467 355 EFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 433 (564)
Q Consensus 355 ~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~ 433 (564)
-.|...+.++.|.+- ..+++|+-.. .-+|.......+ ..+ ....+.+++|..||++++.|-.||+|.|-+-.....
T Consensus 90 YSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~V~-K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek 166 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKSVS-KHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK 166 (1081)
T ss_pred eccCCeeeEeecCchHHHhhhcchhh-ccccChhhhhHH-hhh-hheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence 235666777777553 3345554321 123433322211 111 234688999999999999999999999986433322
Q ss_pred ee--ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 008467 434 VH--DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS 511 (564)
Q Consensus 434 ~~--~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs 511 (564)
+. .--+...+|++++|+|... +....+++......++.++.+. |+.+..-+.-.-...|+++-|+|.|+..||
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg----~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGG 241 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSG----EGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGG 241 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCC----CCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEcc
Confidence 22 2224678999999999753 2222378889999999998876 666653333333457899999999999999
Q ss_pred CCCcEEEEeCCCCeEEEEEe-cCCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 512 LDKSMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 512 ~dg~i~iw~~~~~~~~~~~~-~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
.|+.+++|. +.|-.+.+.. ....|+.++-.|.|+.+++|+.||+++-||+
T Consensus 242 sdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 242 SDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred CCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 999999996 4566666553 3567999999999999999999999988875
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.9e-21 Score=200.47 Aligned_cols=276 Identities=23% Similarity=0.432 Sum_probs=209.7
Q ss_pred EEEECCCCC-EEEEEe----------CCCeEEEEECC---Cc--eeEe-ecCCCCCEEEEEeCCCCCE----EEEeeCCC
Q 008467 280 TLDWNGEGT-LLATGS----------YDGQARIWSTN---GD--LKCT-LSKHKGPIFSLKWNKKGDY----LLTGSCDK 338 (564)
Q Consensus 280 ~l~~s~~g~-~l~sg~----------~dg~i~vw~~~---~~--~~~~-~~~h~~~V~~l~~~~~~~~----l~s~s~D~ 338 (564)
.++|+|.+. ++++|. .+.++-||..+ .. ++.. -......-..|+|.+.|.. |+.|..||
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG 90 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG 90 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCC
Confidence 468999886 555442 24455566432 11 1111 0112334578999988876 88888999
Q ss_pred cEEEEECCCc------ceeEEEeecccCeEEEEcCC--CceEEEEeCCCeEEEEEcCCCceeeEec--CCCcceEEEEEC
Q 008467 339 TAIVWDVKTE------EWKQQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTFA--GHQGEVNCVKWD 408 (564)
Q Consensus 339 ~v~iwd~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~--~h~~~i~~v~~~ 408 (564)
.|.+||...- ..+.++..|.++|..+++.. ...+++|+.||.|++||+.....-..+. .-.+.|.+++|+
T Consensus 91 ~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWN 170 (1049)
T KOG0307|consen 91 NIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWN 170 (1049)
T ss_pred ceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccc
Confidence 9999997642 34556788999999888864 4578999999999999997643222221 134679999998
Q ss_pred CC-CCEEEEEeCCCcEEEEeCCCCeeeeecccccc--cEEEEEEccCCCCCCCCCCcEEEEEEeCC---CeEEEEeCCCC
Q 008467 409 PT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSK--EIYTIRWSPTGSGTNNPNQQLILASASFD---STVKLWDVELG 482 (564)
Q Consensus 409 ~~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~--~i~~i~~~p~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~ 482 (564)
.. ...||+++.+|++.|||++..+++..+..+.. .+..+.|+|+... .|++++.| -.|.+||+|.-
T Consensus 171 rkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT--------ql~~As~dd~~PviqlWDlR~a 242 (1049)
T KOG0307|consen 171 RKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT--------QLLVASGDDSAPVIQLWDLRFA 242 (1049)
T ss_pred hhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce--------eeeeecCCCCCceeEeeccccc
Confidence 75 45689999999999999999988888877665 3678999998752 34445444 36999999853
Q ss_pred -eEEEEEeCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccCCC-EEEEEEcCCcEE
Q 008467 483 -KLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGD-KIAACFANHTVC 558 (564)
Q Consensus 483 -~~~~~~~~h~~~i~~~~~spdg-~~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~-~la~~~~~~~v~ 558 (564)
..+..+.+|...|.++.|++.+ .+|++++.|++|.+|+.++|+.+..+... ..++++.|.|..- .+|+++-+|.|-
T Consensus 243 ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 243 SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheecccee
Confidence 4567788999999999999977 89999999999999999999999988764 4589999999774 889999999999
Q ss_pred EEEee
Q 008467 559 VLDFR 563 (564)
Q Consensus 559 v~~~~ 563 (564)
||.+.
T Consensus 323 I~sl~ 327 (1049)
T KOG0307|consen 323 IYSLQ 327 (1049)
T ss_pred eeeee
Confidence 99875
No 163
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=4.6e-20 Score=179.80 Aligned_cols=285 Identities=22% Similarity=0.310 Sum_probs=200.1
Q ss_pred EEEEECCC---CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467 220 CACAWSPA---GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 296 (564)
Q Consensus 220 ~~~~~sp~---~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 296 (564)
+++.|++. ..+||.+-.||.|.++|....... .....++ ....|...|-.+.|-|....|++++.|
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr-------~ee~~lk----~~~aH~nAifDl~wapge~~lVsasGD 121 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR-------LEERQLK----KPLAHKNAIFDLKWAPGESLLVSASGD 121 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcc-------hhhhhhc----ccccccceeEeeccCCCceeEEEccCC
Confidence 45677763 358999999999999997542211 0000011 123456789999999977789999999
Q ss_pred CeEEEEECCCc-eeE--eecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCccee-------EEEeec--------
Q 008467 297 GQARIWSTNGD-LKC--TLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWK-------QQFEFH-------- 357 (564)
Q Consensus 297 g~i~vw~~~~~-~~~--~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~-------~~~~~~-------- 357 (564)
.++++||+.+. +.- .+.+|.+.|.+++|.|.+. .|++|+.||.+.|||++-.... ..+..|
T Consensus 122 sT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk 201 (720)
T KOG0321|consen 122 STIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK 201 (720)
T ss_pred ceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc
Confidence 99999998753 332 3789999999999999764 6889999999999998643210 001111
Q ss_pred ------------c----cCeEEEEcCCCceEEEEeC-CCeEEEEEcCCCce--------eeEecCC---CcceEEEEECC
Q 008467 358 ------------S----GPTLDVDWRNNVSFATSST-DNMIYVCKIGENRP--------IKTFAGH---QGEVNCVKWDP 409 (564)
Q Consensus 358 ------------~----~~~~~~~~~~~~~~~~~~~-d~~i~~~~~~~~~~--------~~~~~~h---~~~i~~v~~~~ 409 (564)
. +.|..+-+.++..+++++. |+.|+|||+..... +..+.-| .-.+.++..+.
T Consensus 202 p~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs 281 (720)
T KOG0321|consen 202 PLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS 281 (720)
T ss_pred hhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC
Confidence 1 1233456778888888877 99999999976532 2223333 23477888888
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCe--eeeecccccccEEEE--EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-
Q 008467 410 TGSLLASCSDDVTAKIWNMKQDK--YVHDLREHSKEIYTI--RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL- 484 (564)
Q Consensus 410 ~~~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~i~~i--~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~- 484 (564)
.|.+|...+.|+.|.+|++.+.. ++..+.++...-..+ ..+|++. +|++|+.|....+|.+.+.+.
T Consensus 282 sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~---------~l~SgSsd~~ayiw~vs~~e~~ 352 (720)
T KOG0321|consen 282 SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC---------SLLSGSSDEQAYIWVVSSPEAP 352 (720)
T ss_pred CCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc---------eEeccCCCcceeeeeecCccCC
Confidence 88877666669999999987543 233343332211111 2345543 789999999999999987654
Q ss_pred EEEEeCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC
Q 008467 485 LYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEG 524 (564)
Q Consensus 485 ~~~~~~h~~~i~~~~~spdg-~~lasgs~dg~i~iw~~~~~ 524 (564)
...+.+|...|++++|.|.. .-+|++++|.+++||++..+
T Consensus 353 ~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 353 PALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 55678999999999998864 45677799999999999765
No 164
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.1e-19 Score=175.89 Aligned_cols=278 Identities=22% Similarity=0.333 Sum_probs=211.2
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCE-EEEeeCCCcEEEEECCCcc
Q 008467 272 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEE 349 (564)
Q Consensus 272 ~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~ 349 (564)
.+|.+.|.++...|.|.+|++|+.||+||||.+.+ .++.++ ...+.|.+++|+|.+.. +++++.+.++.|-+..-|.
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~-~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~ 475 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV-QFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGD 475 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE-eecceeEEEEecCCCCceeEEEEecCceEEeCccccc
Confidence 45788899999999999999999999999999754 444433 34568999999998754 5555555556665543221
Q ss_pred e-------------------------------------eEEEeecccCeEEEEcCCCc-eEEEEe---CCCeEEEEEcCC
Q 008467 350 W-------------------------------------KQQFEFHSGPTLDVDWRNNV-SFATSS---TDNMIYVCKIGE 388 (564)
Q Consensus 350 ~-------------------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~---~d~~i~~~~~~~ 388 (564)
. +...-.|..++..+.|+... .|++.. ....|.+.++..
T Consensus 476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence 0 01112344456778887554 344433 345688888877
Q ss_pred CceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEE
Q 008467 389 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA 468 (564)
Q Consensus 389 ~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~ 468 (564)
.+....|+-..+.|.++.|+|...+|+.++. ..|+|||+..+..+..+......|.+++.+|.|. -|+.|
T Consensus 556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GD---------nli~g 625 (733)
T KOG0650|consen 556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGD---------NLILG 625 (733)
T ss_pred ccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCC---------eEEEe
Confidence 6666667666788999999999998887775 4799999988888877777778889999999875 36779
Q ss_pred eCCCeEEEEeCCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-------e--EEEEEec-----C
Q 008467 469 SFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG-------K--IVKTYTG-----N 533 (564)
Q Consensus 469 s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~-------~--~~~~~~~-----~ 533 (564)
+.|+.+..+|+.-+ +...++..|...+.+|+|++.-.++|+|+.||++.||.-.-. . .++.+.+ .
T Consensus 626 s~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~ 705 (733)
T KOG0650|consen 626 SYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTND 705 (733)
T ss_pred cCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecc
Confidence 99999999999865 455678889999999999999999999999999999964311 1 2344444 3
Q ss_pred CCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467 534 GGIFEVCWNKEGDKIAACFANHTVCVL 560 (564)
Q Consensus 534 ~~i~~~~w~~~g~~la~~~~~~~v~v~ 560 (564)
.+|.++.|+|.--+|.++.+||++++|
T Consensus 706 ~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 706 LGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cceEeecccCCCceEEecCCCceEEee
Confidence 568999999999999999999999998
No 165
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.86 E-value=2.4e-19 Score=181.54 Aligned_cols=241 Identities=21% Similarity=0.351 Sum_probs=184.1
Q ss_pred CCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCcee-------EeecCCCCCEEEEEeCCCCCE--EEEeeCCCcEEEEE
Q 008467 275 SKDVTTLDWNG-EGTLLATGSYDGQARIWSTNGDLK-------CTLSKHKGPIFSLKWNKKGDY--LLTGSCDKTAIVWD 344 (564)
Q Consensus 275 ~~~V~~l~~s~-~g~~l~sg~~dg~i~vw~~~~~~~-------~~~~~h~~~V~~l~~~~~~~~--l~s~s~D~~v~iwd 344 (564)
...|++++|+| +..+++.|.++|.|.+||..+... .....|..+|+.+.|..+-.. |+++|.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 46799999999 678899999999999999754322 234579999999999765544 99999999999998
Q ss_pred CCCcceeE------EEe------ecccCeEEEEc--CCCceEEEEeCCCeEEEEEcCCCc--------eeeEecCCCcce
Q 008467 345 VKTEEWKQ------QFE------FHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENR--------PIKTFAGHQGEV 402 (564)
Q Consensus 345 ~~~~~~~~------~~~------~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~--------~~~~~~~h~~~i 402 (564)
++.-.... ... .....+..+.+ .+...|+.|+.+|.|+.+...... ++..+..|.+.|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 76433211 001 01112344444 466789999999999986544322 234566788999
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCC-CCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 008467 403 NCVKWDPTGSLLASCSDDVTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 481 (564)
Q Consensus 403 ~~v~~~~~~~~las~s~dg~i~iwd~~-~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 481 (564)
.++.++|-+..++..+.|.+++||... ...++..+..+...+++++|||... .+++++..||.|.|||+..
T Consensus 402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp--------avF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP--------AVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred EeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCc--------eEEEEEcCCCceehhhhhc
Confidence 999999987665555559999999988 6677777777888899999999764 3899999999999999874
Q ss_pred C--eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 008467 482 G--KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 523 (564)
Q Consensus 482 ~--~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~ 523 (564)
. ..+.+..-+....+.+.|++.|+.|++|...|.+++|++..
T Consensus 474 ~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 474 DDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 3 34445544556677889999999999999999999999864
No 166
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=5.9e-20 Score=173.84 Aligned_cols=264 Identities=19% Similarity=0.359 Sum_probs=197.7
Q ss_pred ceEEEEECCCCC-EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467 218 EVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 296 (564)
Q Consensus 218 ~V~~~~~sp~~~-~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 296 (564)
.++.+.|+.... .+|+-++|..+++|.-.. +. + .+..+....+ ..-.|++......++++|+..
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g-~~-~-------~Vp~~~k~~g------d~~~Cv~~~s~S~y~~sgG~~ 100 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDG-KT-P-------EVPRVRKLTG------DNAFCVACASQSLYEISGGQS 100 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccC-CC-C-------ccceeecccc------chHHHHhhhhcceeeeccCcC
Confidence 488999988764 345556899999997322 10 0 0111121111 123344444445899999999
Q ss_pred CeEEEEECCCcee-EeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEE
Q 008467 297 GQARIWSTNGDLK-CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS 375 (564)
Q Consensus 297 g~i~vw~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (564)
+.|+|||...++. ..+..|+..|+++.++-...||++++..|.|.|..+.++.....|...
T Consensus 101 ~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~------------------ 162 (673)
T KOG4378|consen 101 GCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID------------------ 162 (673)
T ss_pred ceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC------------------
Confidence 9999999886544 467899999999999999999999999999999998876533332211
Q ss_pred eCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCE-EEEEeCCCcEEEEeCCCCeeeeec-ccccccEEEEEEccCC
Q 008467 376 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSDDVTAKIWNMKQDKYVHDL-REHSKEIYTIRWSPTG 453 (564)
Q Consensus 376 ~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~-las~s~dg~i~iwd~~~~~~~~~~-~~~~~~i~~i~~~p~~ 453 (564)
....|.-+.|+|..++ |.+++++|.|.+||.....+++.+ ..|..+...|+|+|..
T Consensus 163 ----------------------sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn 220 (673)
T KOG4378|consen 163 ----------------------SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN 220 (673)
T ss_pred ----------------------CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCc
Confidence 1123456788887664 678999999999999988776554 5799999999999865
Q ss_pred CCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEec
Q 008467 454 SGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK-IVKTYTG 532 (564)
Q Consensus 454 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~-~~~~~~~ 532 (564)
. .+|++.+.|..|.+||++..+...++. ...|..+++|+++|.+|++|+..|.|..||++.-+ .+++...
T Consensus 221 e--------~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa 291 (673)
T KOG4378|consen 221 E--------ALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA 291 (673)
T ss_pred c--------ceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee
Confidence 3 589999999999999999766665554 45689999999999999999999999999998654 4444433
Q ss_pred -CCCEEEEEEccCC
Q 008467 533 -NGGIFEVCWNKEG 545 (564)
Q Consensus 533 -~~~i~~~~w~~~g 545 (564)
...|..++|.+.-
T Consensus 292 h~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 292 HDASVTRVAFQPSP 305 (673)
T ss_pred cccceeEEEeeecc
Confidence 4569999998875
No 167
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=8.2e-20 Score=169.24 Aligned_cols=291 Identities=22% Similarity=0.347 Sum_probs=196.1
Q ss_pred eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCC---CCCCCCCceEEEEEeeccccccCCCCeEEEEECCC
Q 008467 210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSN---GGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 286 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 286 (564)
..|..|...|++|.|+|+|.+||||+.+|.+.+|...+.... ......+....+.+.. ..|.++|..++|+|+
T Consensus 59 s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~l----r~h~~diydL~Ws~d 134 (434)
T KOG1009|consen 59 SSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVL----RGHRDDIYDLAWSPD 134 (434)
T ss_pred ecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEe----cccccchhhhhccCC
Confidence 467899999999999999999999999999999987631110 0000111111222222 236788999999999
Q ss_pred CCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEE
Q 008467 287 GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 365 (564)
Q Consensus 287 g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (564)
+.++++|+.|..+++||+. |.+.+.+..|...|..++|.|.++++++-+.|...+.+.+............ ++
T Consensus 135 ~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~---~m--- 208 (434)
T KOG1009|consen 135 SNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLD---IM--- 208 (434)
T ss_pred CceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeee---Ee---
Confidence 9999999999999999986 6778889999999999999999999999999997777776655443322210 00
Q ss_pred cCCCceEEEEeCCCeEEEEEcCCCceeeEecCC--CcceEEEEECCCCCEEEEEeC----CCcE-----EEEeCC-CCee
Q 008467 366 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGH--QGEVNCVKWDPTGSLLASCSD----DVTA-----KIWNMK-QDKY 433 (564)
Q Consensus 366 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h--~~~i~~v~~~~~~~~las~s~----dg~i-----~iwd~~-~~~~ 433 (564)
.+-....+ .++..+.|... ......++|+|+|.+|++.+. .+.+ .+++-+ ..++
T Consensus 209 ------~~~~~~~~--------e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP 274 (434)
T KOG1009|consen 209 ------PAKAFNER--------EGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRP 274 (434)
T ss_pred ------eecccCCC--------CcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCc
Confidence 00000001 01111111100 123456889999999987642 2222 333322 1234
Q ss_pred eeecccccccEEEEEEccCCC----CC------CCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE-eCCCCCEEEEEEcC
Q 008467 434 VHDLREHSKEIYTIRWSPTGS----GT------NNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSP 502 (564)
Q Consensus 434 ~~~~~~~~~~i~~i~~~p~~~----~~------~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~~~~~sp 502 (564)
+..+.....+...++++|--. .. ..| -.+++|.++. ..|.|||.++..+++.. +-|-.+|++++||+
T Consensus 275 ~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lp-yrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~ 352 (434)
T KOG1009|consen 275 AARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLP-YRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSD 352 (434)
T ss_pred eeecCCCCcceEEEEeeeeEEEeccccccccccccc-cceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecC
Confidence 445555666777777776321 00 011 1234555654 57999999988877665 45788999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeE
Q 008467 503 TGEYLASGSLDKSMHIWSLKEGKI 526 (564)
Q Consensus 503 dg~~lasgs~dg~i~iw~~~~~~~ 526 (564)
||.+|+..|.||...+-..+.+++
T Consensus 353 dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 353 DGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred CCcEEEEeccCCceEEEEEcchhc
Confidence 999999999999888877776554
No 168
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=2e-19 Score=159.42 Aligned_cols=257 Identities=26% Similarity=0.419 Sum_probs=186.7
Q ss_pred eEccCCccceEEEEECCC-CCEEEEEECC-------CcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEE
Q 008467 210 TILEGHTSEVCACAWSPA-GSLLASGSGD-------STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL 281 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~-~~~lasgs~D-------~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 281 (564)
.+|..|.++|..++-+|. .++|+|.-.| ..+.||.++..... .+...+..+......+-..|.|+
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~-------S~~~tlE~v~~Ldteavg~i~cv 129 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ-------SNSSTLECVASLDTEAVGKINCV 129 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc-------cccchhhHhhcCCHHHhCceeeE
Confidence 356778899999999995 5677776542 24789998753221 11111111111222334579999
Q ss_pred EECCCCCEEEEEeCCCeEEEEECCCcee--Eee-----cCCCCCEEEEEeCC--CCCEEEEeeCCCcEEEEECCCcceeE
Q 008467 282 DWNGEGTLLATGSYDGQARIWSTNGDLK--CTL-----SKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQ 352 (564)
Q Consensus 282 ~~s~~g~~l~sg~~dg~i~vw~~~~~~~--~~~-----~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~~~~~~ 352 (564)
.|.|++..+++-. |..|.+|+...... ..+ ..|....++-+|+| +|+.+++. .|+++..||+++.....
T Consensus 130 ew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~ 207 (370)
T KOG1007|consen 130 EWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNN 207 (370)
T ss_pred EEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhc
Confidence 9999999988765 88999999754322 211 23566788899998 66777664 58999999999764322
Q ss_pred EEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC-EEEEEeCCCcEEEEeCCC-
Q 008467 353 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQ- 430 (564)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~las~s~dg~i~iwd~~~- 430 (564)
. .-..|...|..+.|+|+.+ +|+||++||.|||||.+.
T Consensus 208 s----------------------------------------I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t 247 (370)
T KOG1007|consen 208 S----------------------------------------IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT 247 (370)
T ss_pred c----------------------------------------hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC
Confidence 1 1235777788999999876 489999999999999875
Q ss_pred CeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC----------------------------
Q 008467 431 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG---------------------------- 482 (564)
Q Consensus 431 ~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~---------------------------- 482 (564)
..++.++.+|...+.+++|.|... -++++|+.|..|.+|...+-
T Consensus 248 k~pv~el~~HsHWvW~VRfn~~hd--------qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~ 319 (370)
T KOG1007|consen 248 KFPVQELPGHSHWVWAVRFNPEHD--------QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQ 319 (370)
T ss_pred CccccccCCCceEEEEEEecCccc--------eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccc
Confidence 556889999999999999988643 37889999999999975321
Q ss_pred -eEEEEEeCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCC
Q 008467 483 -KLLYSLNGHREPVYSLAFSPTGEYL-ASGSLDKSMHIWSLKE 523 (564)
Q Consensus 483 -~~~~~~~~h~~~i~~~~~spdg~~l-asgs~dg~i~iw~~~~ 523 (564)
..+.++..|...|++++||.-..|+ |+-|.||++.|=.+..
T Consensus 320 dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 320 DGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 1234567799999999999877775 7789999998877653
No 169
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.85 E-value=3.1e-20 Score=162.56 Aligned_cols=289 Identities=18% Similarity=0.226 Sum_probs=195.6
Q ss_pred ecCCceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEE
Q 008467 204 IPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 283 (564)
Q Consensus 204 ~~~~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~ 283 (564)
+|+.+..+|++|.+.|+++.|-.+++ |.+|..-|.+++|++.+...... .. ..+...|+.+.-
T Consensus 2 ~pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~-------------~r---~~g~~~it~lq~ 64 (323)
T KOG0322|consen 2 VPPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPL-------------IR---LFGRLFITNLQS 64 (323)
T ss_pred CCCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchh-------------hh---hhccceeeceee
Confidence 35667788999999999999988776 88999999999999986542110 00 123456777777
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCC-----CC---EEEEeeCCCc--EEEEECCCcceeEE
Q 008467 284 NGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKK-----GD---YLLTGSCDKT--AIVWDVKTEEWKQQ 353 (564)
Q Consensus 284 s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~-----~~---~l~s~s~D~~--v~iwd~~~~~~~~~ 353 (564)
-|+ ..+.+-+.|+.+.+|+...... ...|.-.+.++.|.+. ++ +++..-..+. +.+-|......++.
T Consensus 65 ~p~-d~l~tqgRd~~L~lw~ia~s~~--i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i 141 (323)
T KOG0322|consen 65 IPN-DSLDTQGRDPLLILWTIAYSAF--ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQI 141 (323)
T ss_pred cCC-cchhhcCCCceEEEEEccCcce--EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEc
Confidence 776 5677889999999999765322 2223334444444331 11 1111111111 11111110000000
Q ss_pred E----eecccCeEEEEcCCC----ceEEEEeCCCeEEEEEcCCC----------ceeeEecCCCcceEEEEECCCCCEEE
Q 008467 354 F----EFHSGPTLDVDWRNN----VSFATSSTDNMIYVCKIGEN----------RPIKTFAGHQGEVNCVKWDPTGSLLA 415 (564)
Q Consensus 354 ~----~~~~~~~~~~~~~~~----~~~~~~~~d~~i~~~~~~~~----------~~~~~~~~h~~~i~~v~~~~~~~~la 415 (564)
. ....+.+++.+|.-. ..++++-.+|.+.+|++..+ +.+.....|..+|.++.|.+.-..=+
T Consensus 142 ~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGi 221 (323)
T KOG0322|consen 142 ADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGI 221 (323)
T ss_pred cCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCc
Confidence 0 122345666665322 23567778999999999886 33344567899999999987665567
Q ss_pred EEeCCCcEEEEeCCCCe--e-e-eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC
Q 008467 416 SCSDDVTAKIWNMKQDK--Y-V-HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 491 (564)
Q Consensus 416 s~s~dg~i~iwd~~~~~--~-~-~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h 491 (564)
+|+.+..+..|+++... + + .++.-....+..+...|++. ++||++.|+.||||+.++.+.+..++-|
T Consensus 222 sgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K---------IlATAGWD~RiRVyswrtl~pLAVLkyH 292 (323)
T KOG0322|consen 222 SGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK---------ILATAGWDHRIRVYSWRTLNPLAVLKYH 292 (323)
T ss_pred CCCccccceeeeeccccCcccccceEEecCCCccceEEccCCc---------EEeecccCCcEEEEEeccCCchhhhhhh
Confidence 88888889999876431 1 1 11112233466677778775 8999999999999999999999999999
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467 492 REPVYSLAFSPTGEYLASGSLDKSMHIWSL 521 (564)
Q Consensus 492 ~~~i~~~~~spdg~~lasgs~dg~i~iw~~ 521 (564)
+..|++++|+|+...+|+||.|++|.+|++
T Consensus 293 sagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 293 SAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999985
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=4.2e-19 Score=159.79 Aligned_cols=268 Identities=21% Similarity=0.359 Sum_probs=205.9
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCcee-------------Eeec-CCCCCEEEEEeC-------CCCCEEEEeeC
Q 008467 278 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLK-------------CTLS-KHKGPIFSLKWN-------KKGDYLLTGSC 336 (564)
Q Consensus 278 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~-------------~~~~-~h~~~V~~l~~~-------~~~~~l~s~s~ 336 (564)
...+.|||||..|++-+.|..+++|++..... ..+. .....|+.-+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 34568999999999999999999998642211 0111 123456777774 67889999999
Q ss_pred CCcEEEEECCCcceeEEEeecc-----cCeEEEEcCCCceEEEEeCCCeEEEEEc-CCCce--eeEec-----CCCcceE
Q 008467 337 DKTAIVWDVKTEEWKQQFEFHS-----GPTLDVDWRNNVSFATSSTDNMIYVCKI-GENRP--IKTFA-----GHQGEVN 403 (564)
Q Consensus 337 D~~v~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~d~~i~~~~~-~~~~~--~~~~~-----~h~~~i~ 403 (564)
|.-|.+||.-+|+....+.... ....++.|.++..-+.++....|+++++ +.++. +..-. |..+.|.
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis 211 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS 211 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence 9999999999999888775432 2356788888888888889999999998 44432 22212 3367799
Q ss_pred EEEECCCC-CEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEe-CCCeEEEEeCCC
Q 008467 404 CVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVEL 481 (564)
Q Consensus 404 ~v~~~~~~-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~ 481 (564)
|++|+|.. +.+|.|+.-.++-|+.-..++++..+.+|.+.|+.++|.++|. .|.+|+ .|..|..||++.
T Consensus 212 c~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn---------~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 212 CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGN---------KLFSGARKDDKILCWDIRY 282 (406)
T ss_pred eeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcC---------eecccccCCCeEEEEeehh
Confidence 99999965 5899999999999999888999999999999999999999985 355655 578999999985
Q ss_pred -CeEEEEEeCCCC-CEEEEEE--cCCCCEEEEEeCCCcEEEEeCCC-CeEEEEEec-CCCEEEEEEccCCCEEEEEEcC
Q 008467 482 -GKLLYSLNGHRE-PVYSLAF--SPTGEYLASGSLDKSMHIWSLKE-GKIVKTYTG-NGGIFEVCWNKEGDKIAACFAN 554 (564)
Q Consensus 482 -~~~~~~~~~h~~-~i~~~~~--spdg~~lasgs~dg~i~iw~~~~-~~~~~~~~~-~~~i~~~~w~~~g~~la~~~~~ 554 (564)
+..++.+..|.. .-..|-| .|+|++||+|+.||.|++||+++ |..+..+.. ...++.++++|.=.++|++++.
T Consensus 283 ~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 283 SRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 456777777765 3334444 68999999999999999999988 554444432 3467899999998888888765
No 171
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.84 E-value=9e-19 Score=155.50 Aligned_cols=280 Identities=23% Similarity=0.398 Sum_probs=194.8
Q ss_pred cceEEEEECC--C-CCEEEEEEC----CCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC--
Q 008467 217 SEVCACAWSP--A-GSLLASGSG----DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG-- 287 (564)
Q Consensus 217 ~~V~~~~~sp--~-~~~lasgs~----D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-- 287 (564)
-.++++.|+. + +.+||.||- .+.|.|-.+..... .........+..+++.+-|.|+.
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~--------------e~~~~a~fd~~YP~tK~~wiPd~~g 110 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG--------------ELVEDANFDHPYPVTKLMWIPDSKG 110 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC--------------ceeccCCCCCCCCccceEecCCccc
Confidence 3578889984 3 457888872 23444443321100 00011113456789999999976
Q ss_pred ---CEEEEEeCCCeEEEEECCC---c--eeEe-----ecCCCCCEEEEEeCCC-CCEEEEeeCCCcEEEEECCCcceeEE
Q 008467 288 ---TLLATGSYDGQARIWSTNG---D--LKCT-----LSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEWKQQ 353 (564)
Q Consensus 288 ---~~l~sg~~dg~i~vw~~~~---~--~~~~-----~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~ 353 (564)
.+|||.+ -.+|+|.... . +... -..+..|+++..|+.- -++|.++|-|.++.|||+.++..
T Consensus 111 ~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~--- 185 (364)
T KOG0290|consen 111 VYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS--- 185 (364)
T ss_pred cCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc---
Confidence 3566544 5899998652 1 1111 2346679999999974 46788999999999999987621
Q ss_pred EeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCe
Q 008467 354 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDK 432 (564)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~las~s~dg~i~iwd~~~~~ 432 (564)
+ ..-..+-.|..+|..++|...+ ..+||++.||.+|+||++...
T Consensus 186 -------------------------~----------~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le 230 (364)
T KOG0290|consen 186 -------------------------G----------TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE 230 (364)
T ss_pred -------------------------c----------ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc
Confidence 0 0112345688889999998755 578999999999999998654
Q ss_pred eeeec---ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-CeEEEEeCCC-CeEEEEEeCCCCCEEEEEEcCCC-CE
Q 008467 433 YVHDL---REHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTG-EY 506 (564)
Q Consensus 433 ~~~~~---~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~-~~~~~~~~~h~~~i~~~~~spdg-~~ 506 (564)
.-..+ .....+...++|++... .++|+-.+| ..|.|.|++. ...+.++.+|...|+.|+|.|.. ..
T Consensus 231 HSTIIYE~p~~~~pLlRLswnkqDp--------nymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~h 302 (364)
T KOG0290|consen 231 HSTIIYEDPSPSTPLLRLSWNKQDP--------NYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSH 302 (364)
T ss_pred cceEEecCCCCCCcceeeccCcCCc--------hHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCce
Confidence 32222 12244667777776532 367776665 4689999986 45688999999999999999974 78
Q ss_pred EEEEeCCCcEEEEeCCCCe------EEEEEecCCCEEEEEEcc-CCCEEEEEEcCCcEEE
Q 008467 507 LASGSLDKSMHIWSLKEGK------IVKTYTGNGGIFEVCWNK-EGDKIAACFANHTVCV 559 (564)
Q Consensus 507 lasgs~dg~i~iw~~~~~~------~~~~~~~~~~i~~~~w~~-~g~~la~~~~~~~v~v 559 (564)
|++||.|..+.|||+..-- .+-.|...+.|+.+.|++ .++.+|.|+.+ .+-+
T Consensus 303 ictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~k-klei 361 (364)
T KOG0290|consen 303 ICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGK-KLEI 361 (364)
T ss_pred eeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecC-eeeE
Confidence 9999999999999997421 234455667899999995 67899999876 3444
No 172
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.83 E-value=2.1e-20 Score=187.04 Aligned_cols=282 Identities=26% Similarity=0.452 Sum_probs=213.9
Q ss_pred eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
++-|.||...|+|+.|...|.++.||+.|..++||...++.+. ....+|+..|+.++.+.+..
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l-----------------As~rGhs~ditdlavs~~n~ 245 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL-----------------ASCRGHSGDITDLAVSSNNT 245 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh-----------------ccCCCCccccchhccchhhh
Confidence 3567899999999999999999999999999999997665432 12235678899999999999
Q ss_pred EEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467 289 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 367 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (564)
++++++.|..|++|... +..+..+.+|+++|++++|+|-. +.+.||++++||.+-...+ + .
T Consensus 246 ~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~--y--~---------- 307 (1113)
T KOG0644|consen 246 MIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRI--Y--V---------- 307 (1113)
T ss_pred hhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccc--c--C----------
Confidence 99999999999999965 56677899999999999999954 7889999999998611000 0 0
Q ss_pred CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEE
Q 008467 368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 447 (564)
Q Consensus 368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i 447 (564)
..|.. +. ....+.++.|...+.-++|++.|+..+.|.+....+ +...+.-+
T Consensus 308 ---------------------prp~~-~~-~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~ 358 (1113)
T KOG0644|consen 308 ---------------------PRPLK-FT-EKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFV 358 (1113)
T ss_pred ---------------------CCCCC-cc-cccceeeeeccccccccccccCCcccccchhhHhhh------hccceEEE
Confidence 01110 00 113455667777788899999999999887542211 11111111
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeE
Q 008467 448 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL-ASGSLDKSMHIWSLKEGKI 526 (564)
Q Consensus 448 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~l-asgs~dg~i~iw~~~~~~~ 526 (564)
..+.+.. .+.+++-.+-.+.+|++.+|..++.+.+|...++.+.++|-...+ .+++.||...|||+-.|..
T Consensus 359 t~ssd~~--------~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 359 TRSSDLS--------SIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP 430 (1113)
T ss_pred ecccccc--------ccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCc
Confidence 1111111 245566677889999999999999999999999999999977666 4899999999999999987
Q ss_pred EEEEe-cCCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 527 VKTYT-GNGGIFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 527 ~~~~~-~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
++.|. +++.+.+-.||+||+.++..-.=|.+.|+..
T Consensus 431 ik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 431 IKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred ceeeecccceeeccccCCCCceEecCCCCCceEEecc
Confidence 77664 5667889999999999998877777777653
No 173
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=2.4e-19 Score=172.83 Aligned_cols=222 Identities=25% Similarity=0.427 Sum_probs=166.2
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC---------ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEE
Q 008467 274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG---------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 344 (564)
Q Consensus 274 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~---------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd 344 (564)
+...|..++|.+....|++|+.||++++|+.+. ....+|.+|.+||.|++..+++.++++|+.||+|+.|+
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~ 372 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWN 372 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeec
Confidence 456788999999999999999999999998721 34568999999999999999999999999999999998
Q ss_pred CCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEE
Q 008467 345 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 424 (564)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~ 424 (564)
+.... ..+..+. .......+.||.+.|+.+++|+....|++||.||++|
T Consensus 373 ~p~n~--dp~ds~d-----------------------------p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr 421 (577)
T KOG0642|consen 373 LPPNQ--DPDDSYD-----------------------------PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVR 421 (577)
T ss_pred cCCCC--CcccccC-----------------------------cchhccceeccccceeeeeecccccceeeecCCceEE
Confidence 75211 0010000 0112346789999999999999999999999999999
Q ss_pred EEeCCCCeeeeeccc---cccc-----------------------------EEEEEEccCCC------------CCCCCC
Q 008467 425 IWNMKQDKYVHDLRE---HSKE-----------------------------IYTIRWSPTGS------------GTNNPN 460 (564)
Q Consensus 425 iwd~~~~~~~~~~~~---~~~~-----------------------------i~~i~~~p~~~------------~~~~~~ 460 (564)
+|+.....+ .+|.. |.-+ +..+.+.+... ...+|+
T Consensus 422 ~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~ 500 (577)
T KOG0642|consen 422 LWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPT 500 (577)
T ss_pred eeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCC
Confidence 998765443 11110 1000 00011111000 001222
Q ss_pred CcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 008467 461 QQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 528 (564)
Q Consensus 461 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~ 528 (564)
. .+.+++..|+.|+++|..+++.++.+..|...++++++.|+|.+|++|+.||.+.+|.+....++.
T Consensus 501 ~-~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 501 A-DITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred C-CeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheee
Confidence 2 257788999999999999999999999999999999999999999999999999999987554443
No 174
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=3.6e-17 Score=141.78 Aligned_cols=267 Identities=20% Similarity=0.310 Sum_probs=182.1
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEECC----------Cce-eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC
Q 008467 277 DVTTLDWNGEGTLLATGSYDGQARIWSTN----------GDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 345 (564)
Q Consensus 277 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~----------~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~ 345 (564)
.|.+-+|+|.+++|+.|..+|.|.+...+ |+. ....++|.+||+.++|. ..+|++|+ ||.|+-|-.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 35666899999999999999999999753 222 23458999999999998 34566665 699998875
Q ss_pred CCcc----eeE----EEeeccc--C---e--EEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC
Q 008467 346 KTEE----WKQ----QFEFHSG--P---T--LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT 410 (564)
Q Consensus 346 ~~~~----~~~----~~~~~~~--~---~--~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~ 410 (564)
+... ++. +...+.+ + + +.++... ..++.+++|+.++-||+.+++..++|+||+..|.++.-...
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 4321 111 1122221 1 1 2223333 34455559999999999999999999999999999998555
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeeeccccc----------ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC
Q 008467 411 GSLLASCSDDVTAKIWNMKQDKYVHDLREHS----------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 480 (564)
Q Consensus 411 ~~~las~s~dg~i~iwd~~~~~~~~~~~~~~----------~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 480 (564)
...+.||++||++||||.++++++..+.... ..|.+++-+. ..|+. +.-..+.+|+++
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e-----------dWlvC-GgGp~lslwhLr 235 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE-----------DWLVC-GGGPKLSLWHLR 235 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC-----------ceEEe-cCCCceeEEecc
Confidence 5667899999999999999999887664321 2244443322 14544 445679999999
Q ss_pred CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCCEEEEEEccCCC-EEEEEEcCCcEE
Q 008467 481 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGD-KIAACFANHTVC 558 (564)
Q Consensus 481 ~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~g~-~la~~~~~~~v~ 558 (564)
+.++...+. -..++..+.|-.| .+++++..+.|.-|.+. |.+-...+. ....++.+|+..-- .|.++.....+.
T Consensus 236 sse~t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~ 311 (325)
T KOG0649|consen 236 SSESTCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLH 311 (325)
T ss_pred CCCceEEEe-cccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeee
Confidence 888766654 3456788888544 67778877788888774 333333332 34578888988764 444443344566
Q ss_pred EE-Eee
Q 008467 559 VL-DFR 563 (564)
Q Consensus 559 v~-~~~ 563 (564)
|+ |||
T Consensus 312 i~~~~~ 317 (325)
T KOG0649|consen 312 ILKDFR 317 (325)
T ss_pred eeeccc
Confidence 65 544
No 175
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=3e-18 Score=157.85 Aligned_cols=292 Identities=17% Similarity=0.260 Sum_probs=207.4
Q ss_pred eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467 210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 289 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 289 (564)
.-+.+|.+.|+++.||.++++||+|+.|..+++|.+...-... ...|+.+ . ...|...|.|++|....++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k--~~KPI~~------~--~~~H~SNIF~L~F~~~N~~ 119 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK--TPKPIGV------M--EHPHRSNIFSLEFDLENRF 119 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc--CCCCcee------c--cCccccceEEEEEccCCee
Confidence 4567999999999999999999999999999999975421110 0112111 1 1234578999999999999
Q ss_pred EEEEeCCCeEEEEECCCceeEeecCCC---CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc-eeEEEee--cccCeEE
Q 008467 290 LATGSYDGQARIWSTNGDLKCTLSKHK---GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQFEF--HSGPTLD 363 (564)
Q Consensus 290 l~sg~~dg~i~vw~~~~~~~~~~~~h~---~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~--~~~~~~~ 363 (564)
+.+|+.+|+|..-|+..+...-...|. +.|+.+.-+|..+.|++.+.++.|.+||.+... ....+.. .......
T Consensus 120 ~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t 199 (609)
T KOG4227|consen 120 LYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYT 199 (609)
T ss_pred EecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCcccee
Confidence 999999999999998876554444554 499999999999999999999999999987654 1111111 1122333
Q ss_pred EEcC--CCceEEEEeCCCeEEEEEcCCCc-eeeEecCC---C---cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee
Q 008467 364 VDWR--NNVSFATSSTDNMIYVCKIGENR-PIKTFAGH---Q---GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 434 (564)
Q Consensus 364 ~~~~--~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~~h---~---~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~ 434 (564)
+.|. ....+++.+..+.+-+|++.... ++..+.+. . ..-.++.|+|.|+.|.+--.-..-.+||+.+.++.
T Consensus 200 ~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~ 279 (609)
T KOG4227|consen 200 AEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF 279 (609)
T ss_pred eeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccce
Confidence 4443 33456777777888899986542 33332222 1 12357889999999887766656667887765442
Q ss_pred -eeccccc-------ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC----------C-------------e
Q 008467 435 -HDLREHS-------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----------G-------------K 483 (564)
Q Consensus 435 -~~~~~~~-------~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----------~-------------~ 483 (564)
..+ .|. ..+.+.+|.-+ ..+++||.+-.|.+|.+.. | +
T Consensus 280 V~k~-D~N~~GY~N~~T~KS~~F~~D----------~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~ 348 (609)
T KOG4227|consen 280 VLKS-DHNPNGYCNIKTIKSMTFIDD----------YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEK 348 (609)
T ss_pred eEec-cCCCCcceeeeeeeeeeeecc----------eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecc
Confidence 222 222 23445555433 2489999999999998632 1 2
Q ss_pred EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 008467 484 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 522 (564)
Q Consensus 484 ~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~ 522 (564)
.+..+++|+.-++.+.|+|...+|++.+-.+.++||.-.
T Consensus 349 ~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 349 ELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 345688999999999999999999999999999999753
No 176
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=2.2e-18 Score=159.11 Aligned_cols=209 Identities=20% Similarity=0.455 Sum_probs=170.7
Q ss_pred eecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCC
Q 008467 311 TLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN 389 (564)
Q Consensus 311 ~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 389 (564)
.+.+|+++|..++|+|-+ +.|+|||.|.+|.||.+..+.+... ..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~----------------------------------lt 121 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD----------------------------------LT 121 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC----------------------------------cc
Confidence 567999999999999965 5688999999999999865432211 13
Q ss_pred ceeeEecCCCcceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEE
Q 008467 390 RPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA 468 (564)
Q Consensus 390 ~~~~~~~~h~~~i~~v~~~~~~-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~ 468 (564)
.|+..+.||...|--++|+|.- +.|+|++.|.+|.||+..++..+.++. |...|+++.|+.+|. +|++.
T Consensus 122 epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs---------~l~Tt 191 (472)
T KOG0303|consen 122 EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGS---------LLCTT 191 (472)
T ss_pred cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCc---------eeeee
Confidence 5778899999999999999975 678999999999999999999888877 999999999999987 79999
Q ss_pred eCCCeEEEEeCCCCeEEEEEeCCCCC-EEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCe---EEEEEecCCCEEEEEE
Q 008467 469 SFDSTVKLWDVELGKLLYSLNGHREP-VYSLAFSPTGEYLASGS---LDKSMHIWSLKEGK---IVKTYTGNGGIFEVCW 541 (564)
Q Consensus 469 s~dg~i~iwd~~~~~~~~~~~~h~~~-i~~~~~spdg~~lasgs---~dg~i~iw~~~~~~---~~~~~~~~~~i~~~~w 541 (564)
+.|..|||||.++++.+..-.+|.+. -..+.|-.+|..+-||- .+..+-+||..+-+ ...+++...+|.--=|
T Consensus 192 ckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFy 271 (472)
T KOG0303|consen 192 CKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFY 271 (472)
T ss_pred cccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeee
Confidence 99999999999999999988888642 35567888899444442 36789999976543 4566677778888889
Q ss_pred ccCCCEEEEE-EcCCcEEEEEee
Q 008467 542 NKEGDKIAAC-FANHTVCVLDFR 563 (564)
Q Consensus 542 ~~~g~~la~~-~~~~~v~v~~~~ 563 (564)
++|.+.|-.| -+|+.|+.|.+.
T Consensus 272 D~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 272 DPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred cCCCCEEEEEecCCcceEEEEec
Confidence 9999977755 558888888763
No 177
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=5.3e-17 Score=164.75 Aligned_cols=278 Identities=22% Similarity=0.381 Sum_probs=196.6
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-----ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc
Q 008467 274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 348 (564)
Q Consensus 274 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~ 348 (564)
|...+++.++||.++++|+|..||.|.+|.--+ .....+.-|..+|.++.|+++|.+|+||+..+.+.+|.+.++
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence 445689999999999999999999999997443 233467789999999999999999999999999999999998
Q ss_pred ceeEEEeecccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCc---eeeEe--------cCCCcceEEEEECCCCCEEEE
Q 008467 349 EWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENR---PIKTF--------AGHQGEVNCVKWDPTGSLLAS 416 (564)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~---~~~~~--------~~h~~~i~~v~~~~~~~~las 416 (564)
+ .+-+..-.+++..+.+.++ ..++....|+.|.+.....-. .+..+ .+..+-.+.++++|..+.++-
T Consensus 284 ~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vl 362 (792)
T KOG1963|consen 284 K-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVL 362 (792)
T ss_pred C-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceee
Confidence 8 4444555667888877654 566777889998887663321 11111 112445678899997778888
Q ss_pred EeCCCcEEEEeCCCCeeeeeccc-----c------cccEEEEEEccCCCCCCCCCCcEEEEEEe--------CC--CeEE
Q 008467 417 CSDDVTAKIWNMKQDKYVHDLRE-----H------SKEIYTIRWSPTGSGTNNPNQQLILASAS--------FD--STVK 475 (564)
Q Consensus 417 ~s~dg~i~iwd~~~~~~~~~~~~-----~------~~~i~~i~~~p~~~~~~~~~~~~~l~s~s--------~d--g~i~ 475 (564)
++..|.|.+||+-+...+..+.. + .-.++++..+-.|. +++|.- .| -.+|
T Consensus 363 n~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs---------~maT~E~~~d~~~~~~~e~~LK 433 (792)
T KOG1963|consen 363 NGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGS---------WMATLEARIDKFNFFDGEVSLK 433 (792)
T ss_pred cCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccce---------EEEEeeeeehhhhccCceEEEE
Confidence 99999999999987766554431 1 12344444444332 344322 23 3578
Q ss_pred EEeCCCCeEEEE-----EeCCCCCEEEEEEcC-CCC-EEEEEeCCCcEEEEeCCC------Ce------EEEEEecCCCE
Q 008467 476 LWDVELGKLLYS-----LNGHREPVYSLAFSP-TGE-YLASGSLDKSMHIWSLKE------GK------IVKTYTGNGGI 536 (564)
Q Consensus 476 iwd~~~~~~~~~-----~~~h~~~i~~~~~sp-dg~-~lasgs~dg~i~iw~~~~------~~------~~~~~~~~~~i 536 (564)
+|-......-+. ...|...+...+|.+ ... .++++|.||.++||-..+ +. .+..| ....+
T Consensus 434 FW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy-~k~~i 512 (792)
T KOG1963|consen 434 FWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY-HKTPI 512 (792)
T ss_pred EEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc-ccCcc
Confidence 886553332222 246877666655543 333 899999999999999832 21 12223 35678
Q ss_pred EEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 537 FEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 537 ~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
..++|+.||+.||+++.| .|.|||.+
T Consensus 513 ~a~~fs~dGslla~s~~~-~Itiwd~~ 538 (792)
T KOG1963|consen 513 TALCFSQDGSLLAVSFDD-TITIWDYD 538 (792)
T ss_pred cchhhcCCCcEEEEecCC-EEEEecCC
Confidence 899999999988888655 89999975
No 178
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.80 E-value=2.4e-16 Score=154.52 Aligned_cols=218 Identities=19% Similarity=0.313 Sum_probs=153.2
Q ss_pred eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEee--------------------c
Q 008467 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHV--------------------K 268 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~--------------------~ 268 (564)
..+|+||++.|+|++|+.+|+++|||+.|..+.+|.-.-...........+.-+.+... .
T Consensus 46 lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~ 125 (1081)
T KOG1538|consen 46 LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKS 125 (1081)
T ss_pred ccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhh
Confidence 46789999999999999999999999999999999753211111111111111111000 0
Q ss_pred cccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeec---CCCCCEEEEEeCCCC-----CEEEEeeCCCcE
Q 008467 269 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS---KHKGPIFSLKWNKKG-----DYLLTGSCDKTA 340 (564)
Q Consensus 269 ~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~---~h~~~V~~l~~~~~~-----~~l~s~s~D~~v 340 (564)
......+..|.+.+|..||++|+.|-.||+|.+-+..|..+..+. +.+.+|++++|+|.. ..++...+..++
T Consensus 126 V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTL 205 (1081)
T KOG1538|consen 126 VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTL 205 (1081)
T ss_pred HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecccee
Confidence 000123456889999999999999999999999998877655544 477899999999964 467788888888
Q ss_pred EEEECCCcceeEEEeecccCeEEEEc-CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC
Q 008467 341 IVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 419 (564)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~ 419 (564)
.++.+... .+..-..-.-...++.+ .+...+..++.|+.+.++... +..+.++......|+.++..|+++.++.|+.
T Consensus 206 SFy~LsG~-~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCq 283 (1081)
T KOG1538|consen 206 SFYQLSGK-QIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQ 283 (1081)
T ss_pred EEEEecce-eecccccCCCCchhheeccCCcEEEEccCCCceEEEeec-CeEEeeccccceeEEEEEEccCCceEEEEEc
Confidence 88877532 22211111112234444 455566788888988887653 4445566666778999999999999999999
Q ss_pred CCcEEEEeC
Q 008467 420 DVTAKIWNM 428 (564)
Q Consensus 420 dg~i~iwd~ 428 (564)
||+|-.|++
T Consensus 284 DGTiACyNl 292 (1081)
T KOG1538|consen 284 DGTIACYNL 292 (1081)
T ss_pred cCeeehhhh
Confidence 999999986
No 179
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2.2e-17 Score=167.51 Aligned_cols=295 Identities=19% Similarity=0.273 Sum_probs=204.5
Q ss_pred cCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEE
Q 008467 213 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT 292 (564)
Q Consensus 213 ~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~s 292 (564)
..|+-.++|.++||.++++|+|-.||.|.+|.=.... .. ... ..+- .-|...|++++|+++|.+|++
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~-~~-----~~t-~t~l------HWH~~~V~~L~fS~~G~~LlS 268 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS-DD-----SET-CTLL------HWHHDEVNSLSFSSDGAYLLS 268 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccc-cc-----ccc-ceEE------EecccccceeEEecCCceEee
Confidence 3577778999999999999999999999999632100 00 000 0111 124578999999999999999
Q ss_pred EeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccC------------
Q 008467 293 GSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP------------ 360 (564)
Q Consensus 293 g~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~------------ 360 (564)
|+..|.+.+|......+..++.-.++|..+.++|++++.+....|+.|.+-...+.+....+.....+
T Consensus 269 GG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~ 348 (792)
T KOG1963|consen 269 GGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLT 348 (792)
T ss_pred cccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccc
Confidence 99999999999876667888999999999999999999999999999999877665544433222111
Q ss_pred -eEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEec-----------CCCcceEEEEECCCCCEEEEEe--------CC
Q 008467 361 -TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-----------GHQGEVNCVKWDPTGSLLASCS--------DD 420 (564)
Q Consensus 361 -~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-----------~h~~~i~~v~~~~~~~~las~s--------~d 420 (564)
...++. .....+..+..+.|..|++-+...+..+. .+.-.+++++.+..|.+++|.- .|
T Consensus 349 t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~ 427 (792)
T KOG1963|consen 349 TGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFD 427 (792)
T ss_pred eeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccC
Confidence 122232 23455667778888888887766554432 1223467888888899988863 34
Q ss_pred C--cEEEEeCCCCeee----e-ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC------Ce----
Q 008467 421 V--TAKIWNMKQDKYV----H-DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------GK---- 483 (564)
Q Consensus 421 g--~i~iwd~~~~~~~----~-~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~------~~---- 483 (564)
| .+|+|-......- . ....|...+...++.+..+ ....++++.||.++||-+.. ..
T Consensus 428 ~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~r-------s~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~ 500 (792)
T KOG1963|consen 428 GEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTR-------SVRCVTASVDGDFKIWVFTDDSNIYKKSSNWT 500 (792)
T ss_pred ceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcc-------cceeEEeccCCeEEEEEEecccccCcCccceE
Confidence 3 4678875443221 1 1235666666666655432 12678999999999998732 22
Q ss_pred EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEE
Q 008467 484 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE-GKIVKT 529 (564)
Q Consensus 484 ~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~-~~~~~~ 529 (564)
|...-.-|..++++++||.||..|| +|.|++|.|||..+ ..+..+
T Consensus 501 c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~ 546 (792)
T KOG1963|consen 501 CKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCT 546 (792)
T ss_pred EeeeeccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhcc
Confidence 2111122678999999999997665 56788999999987 444333
No 180
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.80 E-value=7.8e-18 Score=151.71 Aligned_cols=232 Identities=24% Similarity=0.414 Sum_probs=183.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECCCc----eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC-CCcce
Q 008467 276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGD----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV-KTEEW 350 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~-~~~~~ 350 (564)
.+|+|.+|++|++.+|.+..+..|.||...+. ...++..|...|+++.|+|..+.|++|+.|+.-.+|.. ..+++
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~W 90 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTW 90 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCee
Confidence 57999999999999999999999999987653 45678999999999999999999999999999999987 44443
Q ss_pred eEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008467 351 KQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 430 (564)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~ 430 (564)
. |...+..++..++++.|+|.++.||+||.-..|.||-+..
T Consensus 91 k---------------------------------------ptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ 131 (361)
T KOG1523|consen 91 K---------------------------------------PTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ 131 (361)
T ss_pred c---------------------------------------cceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEec
Confidence 3 3334555788899999999999999999999999998765
Q ss_pred Cee--e--eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC------------------CeEEEEE
Q 008467 431 DKY--V--HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------------------GKLLYSL 488 (564)
Q Consensus 431 ~~~--~--~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~------------------~~~~~~~ 488 (564)
..- + +.-+.+...|.++.|+|++. +|+.||.|+..|||..-- |+++.++
T Consensus 132 ENdWWVsKhikkPirStv~sldWhpnnV---------LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~ 202 (361)
T KOG1523|consen 132 ENDWWVSKHIKKPIRSTVTSLDWHPNNV---------LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA 202 (361)
T ss_pred ccceehhhhhCCccccceeeeeccCCcc---------eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh
Confidence 431 1 12234567899999999864 899999999999996421 2233344
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEE-ecCCCEEEEEEccCCCEEEEEEcCC
Q 008467 489 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK-IVKTY-TGNGGIFEVCWNKEGDKIAACFANH 555 (564)
Q Consensus 489 ~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~-~~~~~-~~~~~i~~~~w~~~g~~la~~~~~~ 555 (564)
....+.|..+.|+|+|..||-.+.|..+.+=|..... .+.+. ...-+..++.|-.+...+++|+.-+
T Consensus 203 ~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~ 271 (361)
T KOG1523|consen 203 SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYDCG 271 (361)
T ss_pred ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCCCC
Confidence 3455789999999999999999999999999876553 23332 2234567889988888888887644
No 181
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.79 E-value=2.7e-17 Score=146.04 Aligned_cols=258 Identities=21% Similarity=0.388 Sum_probs=187.6
Q ss_pred CCeEEEEECC--C-c-eeEeecCCCCCEEEEEeCCCCCEEE-EeeCC-------CcEEEEECCCcc---------eeEEE
Q 008467 296 DGQARIWSTN--G-D-LKCTLSKHKGPIFSLKWNKKGDYLL-TGSCD-------KTAIVWDVKTEE---------WKQQF 354 (564)
Q Consensus 296 dg~i~vw~~~--~-~-~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D-------~~v~iwd~~~~~---------~~~~~ 354 (564)
|+.|.+-..+ + . ....|..|.+.|+.++-+|-...++ |+..+ ..+.||.+.... ++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 4566555432 2 2 2345777899999999999776554 44442 246799875321 22222
Q ss_pred e-ecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCce-eeEe-----cCCCcceEEEEECC--CCCEEEEEeCCCcEEE
Q 008467 355 E-FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP-IKTF-----AGHQGEVNCVKWDP--TGSLLASCSDDVTAKI 425 (564)
Q Consensus 355 ~-~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~-~~~~-----~~h~~~i~~v~~~~--~~~~las~s~dg~i~i 425 (564)
. .+.+.+.++.|.++..-+++-.|+.|.+|++.+... +..+ .+|....++-+|+| +|+.+++. .|++++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~ 197 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQF 197 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEE
Confidence 2 234567889998877666677799999999987655 2222 24667788999998 77887665 5789999
Q ss_pred EeCCCCeeeeecc-cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEEeCCCCCEEEEEEcCC
Q 008467 426 WNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPT 503 (564)
Q Consensus 426 wd~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~spd 503 (564)
||+++.+....+. +|...+..+.|.|+ .+.+|++|+.||.|+|||.++- ..+.++.+|...|.++.|+|.
T Consensus 198 ~D~RT~~~~~sI~dAHgq~vrdlDfNpn--------kq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~ 269 (370)
T KOG1007|consen 198 WDLRTMKKNNSIEDAHGQRVRDLDFNPN--------KQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPE 269 (370)
T ss_pred EEccchhhhcchhhhhcceeeeccCCCC--------ceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCc
Confidence 9999988766664 68888999988765 4579999999999999999864 468899999999999999996
Q ss_pred -CCEEEEEeCCCcEEEEeCCCCe-----------------------------EEEEEec-CCCEEEEEEccCCCEEE-EE
Q 008467 504 -GEYLASGSLDKSMHIWSLKEGK-----------------------------IVKTYTG-NGGIFEVCWNKEGDKIA-AC 551 (564)
Q Consensus 504 -g~~lasgs~dg~i~iw~~~~~~-----------------------------~~~~~~~-~~~i~~~~w~~~g~~la-~~ 551 (564)
.++|.+||.|..|.+|....-. .+.+|+. ...|++++|+.-.-.+. +-
T Consensus 270 hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASL 349 (370)
T KOG1007|consen 270 HDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASL 349 (370)
T ss_pred cceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEe
Confidence 4778899999999999754211 1223433 35699999998777555 44
Q ss_pred EcCCcEEEEEe
Q 008467 552 FANHTVCVLDF 562 (564)
Q Consensus 552 ~~~~~v~v~~~ 562 (564)
+-||++.|=++
T Consensus 350 SYDGRviIs~V 360 (370)
T KOG1007|consen 350 SYDGRVIISSV 360 (370)
T ss_pred ccCceEEeecC
Confidence 77999877554
No 182
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.79 E-value=2.6e-18 Score=155.12 Aligned_cols=267 Identities=20% Similarity=0.371 Sum_probs=189.7
Q ss_pred CccceEEEEECCCC----CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC-CE
Q 008467 215 HTSEVCACAWSPAG----SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG-TL 289 (564)
Q Consensus 215 h~~~V~~~~~sp~~----~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~ 289 (564)
|...-+.|+|+-+. .+||.||.-|.|||-|+.+++.. +...+|...|..+.+.|+. ++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~-----------------~~~~ghG~sINeik~~p~~~ql 150 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS-----------------KNYRGHGGSINEIKFHPDRPQL 150 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhc-----------------cceeccCccchhhhcCCCCCcE
Confidence 66677899998753 48999999999999998765432 2334566789999999964 79
Q ss_pred EEEEeCCCeEEEEECCCc-eeEee---cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEE
Q 008467 290 LATGSYDGQARIWSTNGD-LKCTL---SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 365 (564)
Q Consensus 290 l~sg~~dg~i~vw~~~~~-~~~~~---~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (564)
+++|+.|..||+|+.... ++..+ .+|.+.|.++.|+++|.+|++++.|.++++|++...++...++.. +.
T Consensus 151 vls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s------~~ 224 (385)
T KOG1034|consen 151 VLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELS------IT 224 (385)
T ss_pred EEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhh------cc
Confidence 999999999999998754 44444 579999999999999999999999999999999876654443321 11
Q ss_pred cCCCceEEEEeCCCeEEEE-EcCCCceee-EecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeC-CCCe----------
Q 008467 366 WRNNVSFATSSTDNMIYVC-KIGENRPIK-TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM-KQDK---------- 432 (564)
Q Consensus 366 ~~~~~~~~~~~~d~~i~~~-~~~~~~~~~-~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~-~~~~---------- 432 (564)
|.++. +.+-+ .....-|.. +-.-|...|.|+.|- |.+++|=|-++.|..|.. +-.+
T Consensus 225 ~~~~~---------t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es 293 (385)
T KOG1034|consen 225 YSPNK---------TTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPES 293 (385)
T ss_pred cCCCC---------ccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCcc
Confidence 21110 00000 000000111 223588899999996 689999999999999986 2111
Q ss_pred ---eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE--EEEeC--CCCCEEEEEEcCCCC
Q 008467 433 ---YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL--YSLNG--HREPVYSLAFSPTGE 505 (564)
Q Consensus 433 ---~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~--h~~~i~~~~~spdg~ 505 (564)
.+.++.-....|+-+.|+-+.. +.+||.|...|.|.+||++..... .++.. ....|...+||.||.
T Consensus 294 ~~Ti~~~~~~~~c~iWfirf~~d~~-------~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs 366 (385)
T KOG1034|consen 294 ATTILGEFDYPMCDIWFIRFAFDPW-------QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS 366 (385)
T ss_pred ceeeeeEeccCccceEEEEEeecHH-------HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc
Confidence 1233444455667776654432 126888999999999999876542 22221 235689999999999
Q ss_pred EEEEEeCCCcEEEEeCC
Q 008467 506 YLASGSLDKSMHIWSLK 522 (564)
Q Consensus 506 ~lasgs~dg~i~iw~~~ 522 (564)
+|+....|++|.-||..
T Consensus 367 ~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 367 ILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEEeCCCcEEEEEee
Confidence 99999999999999864
No 183
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=1e-17 Score=160.37 Aligned_cols=261 Identities=19% Similarity=0.333 Sum_probs=186.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeec---------CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEE
Q 008467 274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS---------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 344 (564)
Q Consensus 274 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~---------~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd 344 (564)
++.-|.|+.|+.....+.+++.+..+.-|+........+. -|.++-. ..=-.....|+.++.||.+.|-+
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs-~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRS-SGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccc-cCCCCCcceEEEEcCCceEEEec
Confidence 3455789999998877766655545555554332221111 1211100 00011235688899999999886
Q ss_pred CCCcceeEEEeecccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcE
Q 008467 345 VKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 423 (564)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i 423 (564)
+.+.+.+....|.+.+.+..|.++ ..+++++.||.|.+|.... ....++......|.|++|.|+.+-++-|-.+ .+
T Consensus 92 -k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-MLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~-h~ 168 (737)
T KOG1524|consen 92 -KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-MLRSTVVQNEESIRCARWAPNSNSIVFCQGG-HI 168 (737)
T ss_pred -ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-hHHHHHhhcCceeEEEEECCCCCceEEecCC-eE
Confidence 566777778889999999999765 5788999999999998642 2223344456689999999998776655443 45
Q ss_pred EEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCC
Q 008467 424 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT 503 (564)
Q Consensus 424 ~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spd 503 (564)
.|=-+.....+-..++|.+-|.++.|+|... ++++|+.|-.-+|||.. |..++.-..|.-||++++|+||
T Consensus 169 ~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~---------lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 169 SIKPLAANSKIIRWRAHDGLVLSLSWSTQSN---------IIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE 238 (737)
T ss_pred EEeecccccceeEEeccCcEEEEeecCcccc---------ceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc
Confidence 5545554445566789999999999998764 89999999999999976 8888888889999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467 504 GEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVL 560 (564)
Q Consensus 504 g~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~ 560 (564)
+.++.+|.. ++++ .-...+.|+.++||+||..++.|.+.|.|.+-
T Consensus 239 -~~~~v~S~n-t~R~----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 239 -KDYLLWSYN-TARF----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred -cceeeeeee-eeee----------cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 666666643 2331 11234679999999999999999999987653
No 184
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=2.6e-17 Score=169.07 Aligned_cols=289 Identities=21% Similarity=0.335 Sum_probs=206.5
Q ss_pred ccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC--CCCE
Q 008467 212 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EGTL 289 (564)
Q Consensus 212 l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g~~ 289 (564)
+.+.......+.|+|-...++++...-.|++||.+.++......++ ......|+.+.+-. |..+
T Consensus 1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~--------------~~~~t~Vs~l~liNe~D~aL 1125 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNG--------------AFPDTRVSDLELINEQDDAL 1125 (1387)
T ss_pred HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCC--------------CCCCCccceeeeecccchhh
Confidence 3444445677889999888998887789999999877643322221 12245688887754 5678
Q ss_pred EEEEeCCCeEEEEECC----C--ceeEee---cC----CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee
Q 008467 290 LATGSYDGQARIWSTN----G--DLKCTL---SK----HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 356 (564)
Q Consensus 290 l~sg~~dg~i~vw~~~----~--~~~~~~---~~----h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 356 (564)
+++|+.||.||||+-- + +++... .+ -.+.-.-+.|.....+|++++.-+.|+|||+....+...+..
T Consensus 1126 lLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~ 1205 (1387)
T KOG1517|consen 1126 LLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY 1205 (1387)
T ss_pred eeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc
Confidence 9999999999999732 1 222211 11 122224467988887888877788999999988877766554
Q ss_pred cccC-e--EEEEcCCCceEEEEeCCCeEEEEEcCCC---ceeeEecCCCcc--eEEEEECCCCCE-EEEEeCCCcEEEEe
Q 008467 357 HSGP-T--LDVDWRNNVSFATSSTDNMIYVCKIGEN---RPIKTFAGHQGE--VNCVKWDPTGSL-LASCSDDVTAKIWN 427 (564)
Q Consensus 357 ~~~~-~--~~~~~~~~~~~~~~~~d~~i~~~~~~~~---~~~~~~~~h~~~--i~~v~~~~~~~~-las~s~dg~i~iwd 427 (564)
.... + +..+......+++|-.||.+++||.+.. .++..++.|+.. |..+.+.+.|-- |++||.||.|++||
T Consensus 1206 ~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~D 1285 (1387)
T KOG1517|consen 1206 GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLD 1285 (1387)
T ss_pred CCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEe
Confidence 4332 2 2233345678899999999999998754 357788899887 999999886644 89999999999999
Q ss_pred CCCCeee--eecccc---cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC-------CCCCE
Q 008467 428 MKQDKYV--HDLREH---SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-------HREPV 495 (564)
Q Consensus 428 ~~~~~~~--~~~~~~---~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------h~~~i 495 (564)
++..... .++..| .+..+++..++... ++|+|+. +.|+||++. |+.+..++. ....+
T Consensus 1286 lR~~~~e~~~~iv~~~~yGs~lTal~VH~hap---------iiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1286 LRMSSKETFLTIVAHWEYGSALTALTVHEHAP---------IIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSV 1354 (1387)
T ss_pred cccCcccccceeeeccccCccceeeeeccCCC---------eeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCc
Confidence 9874211 122222 22467777766543 7899988 999999987 555444332 23467
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467 496 YSLAFSPTGEYLASGSLDKSMHIWSLKEGK 525 (564)
Q Consensus 496 ~~~~~spdg~~lasgs~dg~i~iw~~~~~~ 525 (564)
.|++|+|-.-.||+|+.|.+|.||...++.
T Consensus 1355 scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1355 SCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 999999999999999999999999887543
No 185
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=6.7e-16 Score=152.97 Aligned_cols=271 Identities=14% Similarity=0.227 Sum_probs=171.0
Q ss_pred EEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEECCC--c
Q 008467 231 LASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS-YDGQARIWSTNG--D 307 (564)
Q Consensus 231 lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~-~dg~i~vw~~~~--~ 307 (564)
+++...|+.|++|++.+... +. .++... .......++++|++++|++++ .++.|.+|+.+. .
T Consensus 5 y~~~~~~~~I~~~~~~~~g~--------l~--~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~ 69 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGA--------LT--LLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA 69 (330)
T ss_pred EEEcCCCCCEEEEEECCCCc--------ee--eeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc
Confidence 34446789999999853211 11 111111 123466789999999887765 478899998752 2
Q ss_pred eeEe-ecCCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEE
Q 008467 308 LKCT-LSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK 385 (564)
Q Consensus 308 ~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 385 (564)
+... .....+....+.|+|++++|++++. ++.|.+|++.+.....
T Consensus 70 l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~--------------------------------- 116 (330)
T PRK11028 70 LTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPV--------------------------------- 116 (330)
T ss_pred eEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC---------------------------------
Confidence 2211 1113335578999999999887764 7889999885321110
Q ss_pred cCCCceeeEecCCCcceEEEEECCCCCEEE-EEeCCCcEEEEeCCCCeeeee-----cc-cccccEEEEEEccCCCCCCC
Q 008467 386 IGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDKYVHD-----LR-EHSKEIYTIRWSPTGSGTNN 458 (564)
Q Consensus 386 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~la-s~s~dg~i~iwd~~~~~~~~~-----~~-~~~~~i~~i~~~p~~~~~~~ 458 (564)
..+..+.+ .....+++++|++++++ +...++.|.+||+.+...+.. .. ........+.|+|++.
T Consensus 117 ----~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~---- 187 (330)
T PRK11028 117 ----APIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQ---- 187 (330)
T ss_pred ----CceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCC----
Confidence 00111111 12345678999998875 455679999999976432211 11 1123346788888875
Q ss_pred CCCcEEEEEEe-CCCeEEEEeCCC--C--eEEEEEeCC------CCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCe-
Q 008467 459 PNQQLILASAS-FDSTVKLWDVEL--G--KLLYSLNGH------REPVYSLAFSPTGEYLASGSL-DKSMHIWSLKEGK- 525 (564)
Q Consensus 459 ~~~~~~l~s~s-~dg~i~iwd~~~--~--~~~~~~~~h------~~~i~~~~~spdg~~lasgs~-dg~i~iw~~~~~~- 525 (564)
++++++ .+++|.+|++.. + +.+..+..+ ......+.|+|+|++|+++.. ++.|.+|++....
T Consensus 188 -----~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~ 262 (330)
T PRK11028 188 -----YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS 262 (330)
T ss_pred -----EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC
Confidence 444444 489999999973 3 233333221 112346899999999988854 7899999985432
Q ss_pred ---EEEEEecCCCEEEEEEccCCCEEEEEEc-CCcEEEEEee
Q 008467 526 ---IVKTYTGNGGIFEVCWNKEGDKIAACFA-NHTVCVLDFR 563 (564)
Q Consensus 526 ---~~~~~~~~~~i~~~~w~~~g~~la~~~~-~~~v~v~~~~ 563 (564)
++...........++|+|+|++|+++.. +++|.||++.
T Consensus 263 ~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 263 VLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 3333333334568999999999998765 8899999763
No 186
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.77 E-value=2e-16 Score=160.49 Aligned_cols=257 Identities=21% Similarity=0.308 Sum_probs=186.0
Q ss_pred CeEEEEECCCceeE-eecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCccee--E----EEeecccCeEEEEcCC
Q 008467 297 GQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWK--Q----QFEFHSGPTLDVDWRN 368 (564)
Q Consensus 297 g~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~--~----~~~~~~~~~~~~~~~~ 368 (564)
+.+.||+....... ..-.-..+|++++|+|.. +.++.|..+|+|.+||++.+... . ....|..++..+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 47899987644221 222345789999999965 56778888999999999876652 2 2245777899999953
Q ss_pred C---ceEEEEeCCCeEEEEEcCCCc-eeeEe-----c------CCCcceEEEEECCCC-CEEEEEeCCCcEEEEe---CC
Q 008467 369 N---VSFATSSTDNMIYVCKIGENR-PIKTF-----A------GHQGEVNCVKWDPTG-SLLASCSDDVTAKIWN---MK 429 (564)
Q Consensus 369 ~---~~~~~~~~d~~i~~~~~~~~~-~~~~~-----~------~h~~~i~~v~~~~~~-~~las~s~dg~i~iwd---~~ 429 (564)
+ ..|++++.||.|..|+++.-. |+... . .-...+++++|.+.. ..++.|+++|.|.-=+ .+
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 3 458999999999999876422 11111 1 112357889998744 5688999999887622 22
Q ss_pred CCe-----eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-CCeEEEEEeCCCCCEEEEEEcCC
Q 008467 430 QDK-----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYSLAFSPT 503 (564)
Q Consensus 430 ~~~-----~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~i~~~~~spd 503 (564)
... .+..+..|.++|+++.++|-+. .++++++ |.+|+||.-. ...++..+..+...|++++|||.
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~--------k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSpt 452 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYP--------KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPT 452 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCcc--------ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCc
Confidence 221 1335567889999999999764 2455555 9999999987 66777778778888999999998
Q ss_pred C-CEEEEEeCCCcEEEEeCCCCe--EEEEEe-cCCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 504 G-EYLASGSLDKSMHIWSLKEGK--IVKTYT-GNGGIFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 504 g-~~lasgs~dg~i~iw~~~~~~--~~~~~~-~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
. ..+|++..||.|.|||+.... .+.+.. +....+.+.|++.|+.||+|..+|++.+|++
T Consensus 453 rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 453 RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred CceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 7 566888889999999996533 222221 1334567899999999999999999999987
No 187
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=3.8e-18 Score=157.57 Aligned_cols=160 Identities=26% Similarity=0.524 Sum_probs=136.9
Q ss_pred eEecCCCcceEEEEECCC-CCEEEEEeCCCcEEEEeCCCC-------eeeeecccccccEEEEEEccCCCCCCCCCCcEE
Q 008467 393 KTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQD-------KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI 464 (564)
Q Consensus 393 ~~~~~h~~~i~~v~~~~~-~~~las~s~dg~i~iwd~~~~-------~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~ 464 (564)
-.+.||++.|..++|+|- ...|||||+|.+|.||++-.. .++..+.+|...|..++|+|... .+
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~--------NV 146 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP--------NV 146 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch--------hh
Confidence 356799999999999995 467899999999999997543 45677889999999999999754 37
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCC--EEEEEEc
Q 008467 465 LASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG--IFEVCWN 542 (564)
Q Consensus 465 l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~--i~~~~w~ 542 (564)
|+|++.|.+|.+||+.+|+.+.++. |..-|++++|+.||.+|++.+.|+.|+|||.++|+++..-.++.+ ...+-|-
T Consensus 147 Llsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl 225 (472)
T KOG0303|consen 147 LLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFL 225 (472)
T ss_pred HhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEe
Confidence 8999999999999999999999988 999999999999999999999999999999999999887655443 3456788
Q ss_pred cCCCEEEEEEc---CCcEEEEE
Q 008467 543 KEGDKIAACFA---NHTVCVLD 561 (564)
Q Consensus 543 ~~g~~la~~~~---~~~v~v~~ 561 (564)
.+|+.+.+|++ +..+.+||
T Consensus 226 ~~g~i~tTGfsr~seRq~aLwd 247 (472)
T KOG0303|consen 226 ASGKIFTTGFSRMSERQIALWD 247 (472)
T ss_pred ccCceeeeccccccccceeccC
Confidence 89997777765 45677776
No 188
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.77 E-value=1.5e-17 Score=145.84 Aligned_cols=276 Identities=16% Similarity=0.236 Sum_probs=188.6
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc-eeEeec-CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcce
Q 008467 273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW 350 (564)
Q Consensus 273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~ 350 (564)
++...|+++.|..++. |.+|..-|.|++|...+. ....+. .|...|+.+.--|+ ..+.+-+.|..+.+|++.....
T Consensus 12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~ 89 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAF 89 (323)
T ss_pred cccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcce
Confidence 4567899999998876 789999999999998754 344555 57789999998887 6789999999999999876554
Q ss_pred eEEEeecccCeEEEEcCC-------C--ceEEEEeCCC--eEEEEEcCCCceeeEe----cCCCcceEEEEECCC-CC--
Q 008467 351 KQQFEFHSGPTLDVDWRN-------N--VSFATSSTDN--MIYVCKIGENRPIKTF----AGHQGEVNCVKWDPT-GS-- 412 (564)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~d~--~i~~~~~~~~~~~~~~----~~h~~~i~~v~~~~~-~~-- 412 (564)
+..- .-.+..+.|.. . .........+ .+.+-|......+... .+..+.+.|..|..+ ++
T Consensus 90 i~i~---Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~ 166 (323)
T KOG0322|consen 90 ISIH---SIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTF 166 (323)
T ss_pred EEEe---eeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceE
Confidence 3321 11111111100 0 0011000000 0111122111111111 234566777776443 32
Q ss_pred EEEEEeCCCcEEEEeCCCC----------eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-
Q 008467 413 LLASCSDDVTAKIWNMKQD----------KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL- 481 (564)
Q Consensus 413 ~las~s~dg~i~iwd~~~~----------~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~- 481 (564)
+++.|-++|.+.+||+.++ +.+.....|.+++.++.+.+.... =++|+.+..+..|++.-
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r---------Gisgga~dkl~~~Sl~~s 237 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR---------GISGGADDKLVMYSLNHS 237 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC---------CcCCCccccceeeeeccc
Confidence 4677888999999999887 333344568899999999864331 24677777888888753
Q ss_pred -CeEE--EEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCCEEEEEEccCCCEEEEEEcCCcE
Q 008467 482 -GKLL--YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTV 557 (564)
Q Consensus 482 -~~~~--~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~g~~la~~~~~~~v 557 (564)
+.+. ..+.-..-.|..+..-||++.+||+|.|++|+||+.++...+..+.- .++|.+++|+|+...+|+++.|++|
T Consensus 238 ~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rI 317 (323)
T KOG0322|consen 238 TGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARI 317 (323)
T ss_pred cCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceE
Confidence 3221 12222334688999999999999999999999999999988777654 4679999999999999999999999
Q ss_pred EEEEe
Q 008467 558 CVLDF 562 (564)
Q Consensus 558 ~v~~~ 562 (564)
.+|++
T Consensus 318 SLWkL 322 (323)
T KOG0322|consen 318 SLWKL 322 (323)
T ss_pred Eeeec
Confidence 99986
No 189
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=4.9e-17 Score=147.82 Aligned_cols=265 Identities=16% Similarity=0.275 Sum_probs=185.3
Q ss_pred CEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCC--CCCEEEEeeCCCcEEEEECCCcceeEEEee--cc-cCe
Q 008467 288 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQQFEF--HS-GPT 361 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--~~-~~~ 361 (564)
+.+|++..+|.|++||.. ++....+.+|...+..++|.. ..+.+++|+.||+|++||+++......+.. +. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 578899999999999965 566778899999999999977 467899999999999999998665544433 32 234
Q ss_pred EEEEcC-CCceEEEEe----CCCeEEEEEcCCCce-eeEe-cCCCcceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCee
Q 008467 362 LDVDWR-NNVSFATSS----TDNMIYVCKIGENRP-IKTF-AGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKY 433 (564)
Q Consensus 362 ~~~~~~-~~~~~~~~~----~d~~i~~~~~~~~~~-~~~~-~~h~~~i~~v~~~~~-~~~las~s~dg~i~iwd~~~~~~ 433 (564)
.+++-. +...++++. .+..+.+||++..+. +..+ ..|...|++++|+|. .++|+|||.||-|.|||++....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 455544 233344432 466789999987664 5544 579999999999995 47899999999999999976532
Q ss_pred ---eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC------------CCEEEE
Q 008467 434 ---VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR------------EPVYSL 498 (564)
Q Consensus 434 ---~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~------------~~i~~~ 498 (564)
+.....|...|..+.|...+.. -+.+-+...+..+|++..+.+...+.... .-+-.
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~yk--------rI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~- 271 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYK--------RIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN- 271 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcc--------eEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee-
Confidence 3333457788999999876631 35667788999999998877554432110 00111
Q ss_pred EEcC-CCCEEEEEeC-CCcEEEEeCC---CCeE---EEEEecCC--CEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 499 AFSP-TGEYLASGSL-DKSMHIWSLK---EGKI---VKTYTGNG--GIFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 499 ~~sp-dg~~lasgs~-dg~i~iw~~~---~~~~---~~~~~~~~--~i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
..+| ++..++.++. -+...++-+. ++.. +..+.+.+ -|.++.|+..+..+.+|+.||.+.+|-
T Consensus 272 ~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 272 EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 1223 4455555554 4555555433 3332 23333322 256899999999999999999999996
No 190
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.75 E-value=3.7e-16 Score=141.25 Aligned_cols=264 Identities=17% Similarity=0.276 Sum_probs=170.2
Q ss_pred cCCCCeEEEEECCCCC-EEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC---CCc
Q 008467 273 EKSKDVTTLDWNGEGT-LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV---KTE 348 (564)
Q Consensus 273 ~~~~~V~~l~~s~~g~-~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~---~~~ 348 (564)
....++.+++|||||+ +|.+...+-.|.||+...+....+...+..+.+++|+|+|++.+.++.-...-..++ ..-
T Consensus 89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W 168 (447)
T KOG4497|consen 89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW 168 (447)
T ss_pred cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence 3456799999999995 556677899999999887665555555566789999999998877765322111111 112
Q ss_pred ceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCC-cceEEEEECCCCCEEEEEeCCCcEEEEe
Q 008467 349 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWN 427 (564)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~i~~v~~~~~~~~las~s~dg~i~iwd 427 (564)
.+...|........++.|.++.. .+.+|+.--.-.+..+ |. -.+..++|+|.+++|+.|+.|+.+||-+
T Consensus 169 ~ll~~f~~dT~DltgieWsPdg~--------~laVwd~~Leykv~aY--e~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 169 ILLKEFKLDTIDLTGIEWSPDGN--------WLAVWDNVLEYKVYAY--ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred HHHHhcCCCcccccCceECCCCc--------EEEEecchhhheeeee--eeccceeEEEeccccceEEeeccchhhhhhc
Confidence 23334444444556677865533 3445543222222222 22 3577899999999999999999998855
Q ss_pred CCCCeeeeecc------------------------------------cc------------------------------c
Q 008467 428 MKQDKYVHDLR------------------------------------EH------------------------------S 441 (564)
Q Consensus 428 ~~~~~~~~~~~------------------------------------~~------------------------------~ 441 (564)
--+.++..++- +| .
T Consensus 239 h~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk 318 (447)
T KOG4497|consen 239 HFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPK 318 (447)
T ss_pred eeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcc
Confidence 32222111110 00 0
Q ss_pred ccEEEEEEccCCCCCCCCCCcEEEEEEe--CCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008467 442 KEIYTIRWSPTGSGTNNPNQQLILASAS--FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW 519 (564)
Q Consensus 442 ~~i~~i~~~p~~~~~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw 519 (564)
..+..++|+++. .++++-. .-+.+-+||+++.+.-..+ ....+|....|.|....|+.+....++++|
T Consensus 319 ~g~g~lafs~Ds---------~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~piraf~WdP~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 319 CGAGKLAFSCDS---------TYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRAFEWDPGRPRLVVCTGKSRLYFW 388 (447)
T ss_pred cccceeeecCCc---------eEEeeecCCCCceEEEEechhhhhhhhh-hhccceeEEEeCCCCceEEEEcCCceEEEE
Confidence 011223333322 3555543 2356899999876654333 345689999999999999988888889999
Q ss_pred eCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCc
Q 008467 520 SLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHT 556 (564)
Q Consensus 520 ~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~ 556 (564)
.......+..-...-.|.+++|+-+|..++.++.|.-
T Consensus 389 ~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 389 APSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred cCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 9876555544333346889999999999999988863
No 191
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=8.9e-17 Score=164.26 Aligned_cols=211 Identities=20% Similarity=0.236 Sum_probs=150.1
Q ss_pred CCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCC---CcEEEEECCCcceeEEEeecccCeEEEEcCCCceE
Q 008467 296 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF 372 (564)
Q Consensus 296 dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (564)
+..|++||.+|.....+..|...+.+.+|+|+|++|+.++.+ ..|.+||+.++....
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-------------------- 242 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-------------------- 242 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE--------------------
Confidence 468999999887666778888999999999999999887654 368889887654211
Q ss_pred EEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe-CCCcEEEE--eCCCCeeeeecccccccEEEEEE
Q 008467 373 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIW--NMKQDKYVHDLREHSKEIYTIRW 449 (564)
Q Consensus 373 ~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s-~dg~i~iw--d~~~~~~~~~~~~~~~~i~~i~~ 449 (564)
+..+.+|. .+++|+|||+.|+.++ .+|.+.|| |+.++. ...+..+...+....|
T Consensus 243 -------------------l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~w 299 (429)
T PRK01742 243 -------------------VASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSW 299 (429)
T ss_pred -------------------EecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEE
Confidence 11222332 3579999999887765 68876666 555554 3445566667788999
Q ss_pred ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 008467 450 SPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 528 (564)
Q Consensus 450 ~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~ 528 (564)
+|+|. .+++++..+|..+||++... .....+ .+.. .+.+|||||++|+.++.++ +.+||+.+++...
T Consensus 300 SpDG~--------~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~ 367 (429)
T PRK01742 300 SPDGQ--------SILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV 367 (429)
T ss_pred CCCCC--------EEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE
Confidence 99885 24555556788888876532 222223 3433 5678999999999888766 5669999887543
Q ss_pred EEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 529 TYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 529 ~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
.... .....++|+|+|++|++++.++.+.+|.+
T Consensus 368 lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 368 LSST-FLDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred ecCC-CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 3222 23456889999999999998888877764
No 192
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=3.4e-15 Score=137.40 Aligned_cols=235 Identities=19% Similarity=0.281 Sum_probs=160.5
Q ss_pred CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCC-CeEEEEEcCCCceeeEe
Q 008467 317 GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTD-NMIYVCKIGENRPIKTF 395 (564)
Q Consensus 317 ~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~~~~~~~~~~~~~~ 395 (564)
..+..+.|+.+...|..|+.|| .+++.................+..+-|......+.+-.+ +.++++..+....+-.+
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~ 84 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEI 84 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEE
Confidence 3456667999888888888887 466655432211111111112333334433333222222 34666666554443332
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc-cccEEEEEEccCCCCCCCCCCcEEEEE-Ee-CCC
Q 008467 396 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH-SKEIYTIRWSPTGSGTNNPNQQLILAS-AS-FDS 472 (564)
Q Consensus 396 ~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~-~~~i~~i~~~p~~~~~~~~~~~~~l~s-~s-~dg 472 (564)
. ...+|.+|.++. +.|+.+=.+. |.|||+++.+.++++..- ..+---.+++|... + .+||- ++ ..|
T Consensus 85 ~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~------n-~ylAyp~s~t~G 153 (391)
T KOG2110|consen 85 F-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNA------N-CYLAYPGSTTSG 153 (391)
T ss_pred e-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCC------C-ceEEecCCCCCc
Confidence 2 245788888874 4555565554 999999999999887643 22222334444321 1 14443 22 358
Q ss_pred eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCeEEEEEecC---CCEEEEEEccCCCEE
Q 008467 473 TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS-MHIWSLKEGKIVKTYTGN---GGIFEVCWNKEGDKI 548 (564)
Q Consensus 473 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~-i~iw~~~~~~~~~~~~~~---~~i~~~~w~~~g~~l 548 (564)
.|.|||+.+-+.+..+..|.+++-+++|+|+|.+|||||..|+ |+||.+.+|+.+..|+-. ..|++++|+|++++|
T Consensus 154 dV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 154 DVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred eEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 9999999999999999999999999999999999999999986 799999999999988643 358999999999999
Q ss_pred EEEEcCCcEEEEEee
Q 008467 549 AACFANHTVCVLDFR 563 (564)
Q Consensus 549 a~~~~~~~v~v~~~~ 563 (564)
++.+..++|+||.+.
T Consensus 234 ~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 234 AASSNTETVHIFKLE 248 (391)
T ss_pred EEecCCCeEEEEEec
Confidence 999999999999764
No 193
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.6e-15 Score=137.60 Aligned_cols=275 Identities=24% Similarity=0.406 Sum_probs=180.2
Q ss_pred ceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC-CEEEEEeCC
Q 008467 218 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG-TLLATGSYD 296 (564)
Q Consensus 218 ~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~l~sg~~d 296 (564)
.+..++||+.-.-+|.+..|-+||||+-... . ...++. .....|+|++|-|.+ .-|+.|..
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst-~----------pt~Lks------~sQrnvtclawRPlsaselavgCr- 161 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSST-C----------PTKLKS------VSQRNVTCLAWRPLSASELAVGCR- 161 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCC-C----------Cceecc------hhhcceeEEEeccCCcceeeeeec-
Confidence 4667899997778899999999999985431 1 011221 224679999999954 56666665
Q ss_pred CeEEEEECCCcee---------------EeecCCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECCCcceeEEEeecccC
Q 008467 297 GQARIWSTNGDLK---------------CTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSGP 360 (564)
Q Consensus 297 g~i~vw~~~~~~~---------------~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~ 360 (564)
+-|.+|..+.... ..-.+| .+|++++|+++|..+++++. |..|+|||+.++..+.
T Consensus 162 ~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p-------- 232 (445)
T KOG2139|consen 162 AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP-------- 232 (445)
T ss_pred ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc--------
Confidence 5688997542211 112344 68999999999999999886 4679999998875332
Q ss_pred eEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc
Q 008467 361 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 440 (564)
Q Consensus 361 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~ 440 (564)
+.. -.-+.++-+.|||||..|+.++-|+..++|+...........--
T Consensus 233 -------------------------------L~~--~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg 279 (445)
T KOG2139|consen 233 -------------------------------LIP--KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG 279 (445)
T ss_pred -------------------------------ccc--cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceecc
Confidence 111 12345777999999999999999999999965433222222223
Q ss_pred cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC----C--------e---EEEEE------eC---CCCCEE
Q 008467 441 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----G--------K---LLYSL------NG---HREPVY 496 (564)
Q Consensus 441 ~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----~--------~---~~~~~------~~---h~~~i~ 496 (564)
.+.|.+.+|+|.|+ .+|.+++..- ++|.+.. + + .+..+ .+ ..+++.
T Consensus 280 sgrvqtacWspcGs--------fLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq 349 (445)
T KOG2139|consen 280 SGRVQTACWSPCGS--------FLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQ 349 (445)
T ss_pred CCceeeeeecCCCC--------EEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccc
Confidence 45899999999986 3555555433 3333211 0 0 11111 11 135789
Q ss_pred EEEEcCCCCEEEEEeCC--------CcEEEEeCCCCeEEEEE----ecCCCEEEEEEcc---CCCEEEEEEcCCcEEEEE
Q 008467 497 SLAFSPTGEYLASGSLD--------KSMHIWSLKEGKIVKTY----TGNGGIFEVCWNK---EGDKIAACFANHTVCVLD 561 (564)
Q Consensus 497 ~~~~spdg~~lasgs~d--------g~i~iw~~~~~~~~~~~----~~~~~i~~~~w~~---~g~~la~~~~~~~v~v~~ 561 (564)
+++|.|.|.+||+--.. +.|.+||.+.--.+... .+....--++|+| +|..|.+|.+.|.+.-|+
T Consensus 350 ~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~yp 429 (445)
T KOG2139|consen 350 CLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYP 429 (445)
T ss_pred eeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeee
Confidence 99999999999985433 34677877654332221 1122233456655 678999999999988776
Q ss_pred e
Q 008467 562 F 562 (564)
Q Consensus 562 ~ 562 (564)
+
T Consensus 430 l 430 (445)
T KOG2139|consen 430 L 430 (445)
T ss_pred e
Confidence 5
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=1.5e-14 Score=133.16 Aligned_cols=233 Identities=22% Similarity=0.345 Sum_probs=171.1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEe-ecCCCCCEEEEEeCCCCCEEEEeeCC--CcEEEEECCCcceeE
Q 008467 276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCD--KTAIVWDVKTEEWKQ 352 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D--~~v~iwd~~~~~~~~ 352 (564)
..+..+.|+.+...|..|+.||. ++++.+...++. .......|.-+-|+.. .++..+.+ +.+++.+.+.+..+.
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred cceeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEE
Confidence 45777789999999999999985 566544322211 1111223444556543 44444444 458899888776665
Q ss_pred EEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecC---CCcceEEEEECCCCCEEEEE--eCCCcEEEEe
Q 008467 353 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG---HQGEVNCVKWDPTGSLLASC--SDDVTAKIWN 427 (564)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~---h~~~i~~v~~~~~~~~las~--s~dg~i~iwd 427 (564)
.+.+. .+++++....+..+ .+-.+ .|+++|+..-+++.++.. +...+.++.+++.+.++|-= ...|.|.|||
T Consensus 83 e~~fp-t~IL~VrmNr~RLv-V~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d 159 (391)
T KOG2110|consen 83 EIFFP-TSILAVRMNRKRLV-VCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFD 159 (391)
T ss_pred EEecC-CceEEEEEccceEE-EEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEE
Confidence 54432 35666666544433 33333 399999998887776643 34456667777777788753 3478999999
Q ss_pred CCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCe-EEEEeCCCCeEEEEEeCCC--CCEEEEEEcCCC
Q 008467 428 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST-VKLWDVELGKLLYSLNGHR--EPVYSLAFSPTG 504 (564)
Q Consensus 428 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~h~--~~i~~~~~spdg 504 (564)
..+-+++..+.+|.+++-+++|+|+|. +|||+|..|+ |||+.+.+|+.++.++... ..|++++|+||+
T Consensus 160 ~~nl~~v~~I~aH~~~lAalafs~~G~---------llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds 230 (391)
T KOG2110|consen 160 TINLQPVNTINAHKGPLAALAFSPDGT---------LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS 230 (391)
T ss_pred cccceeeeEEEecCCceeEEEECCCCC---------EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC
Confidence 999999999999999999999999996 8999999997 6999999999999986433 358999999999
Q ss_pred CEEEEEeCCCcEEEEeCCC
Q 008467 505 EYLASGSLDKSMHIWSLKE 523 (564)
Q Consensus 505 ~~lasgs~dg~i~iw~~~~ 523 (564)
++|++.|..++|+||.+.+
T Consensus 231 ~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 231 QFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CeEEEecCCCeEEEEEecc
Confidence 9999999999999999864
No 195
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=2e-16 Score=161.65 Aligned_cols=213 Identities=17% Similarity=0.225 Sum_probs=143.7
Q ss_pred CCCeEEEEECCCCCEEEEEeCC---CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEee-CCCcEEEE--ECCCc
Q 008467 275 SKDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVW--DVKTE 348 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~sg~~d---g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iw--d~~~~ 348 (564)
...+.+.+|||||+.|+.++.+ ..|++|+..+.....+....+....++|+|+|++|+.++ .+|.+.|| |+.++
T Consensus 203 ~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~ 282 (429)
T PRK01742 203 SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG 282 (429)
T ss_pred CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCC
Confidence 3468899999999999988764 369999986543323332333345689999999888764 57766655 43332
Q ss_pred ceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe-CCCcEEEEe
Q 008467 349 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWN 427 (564)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s-~dg~i~iwd 427 (564)
. ...+..+...+.++.|+|||+.|+.++ .+|..+||+
T Consensus 283 ~------------------------------------------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~ 320 (429)
T PRK01742 283 T------------------------------------------PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYR 320 (429)
T ss_pred C------------------------------------------eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEE
Confidence 2 122334455677899999999876655 578889998
Q ss_pred CCCCe-eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCE
Q 008467 428 MKQDK-YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 506 (564)
Q Consensus 428 ~~~~~-~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~ 506 (564)
+.... ....+ .+.. +...|+|+|. .|+..+.++ +.+||+.+++.......+ ...+++|+|||++
T Consensus 321 ~~~~~~~~~~l-~~~~--~~~~~SpDG~---------~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~ 385 (429)
T PRK01742 321 MSASGGGASLV-GGRG--YSAQISADGK---------TLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIM 385 (429)
T ss_pred EECCCCCeEEe-cCCC--CCccCCCCCC---------EEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCE
Confidence 65322 12222 3332 4567888875 455555555 556999888754322222 2356889999999
Q ss_pred EEEEeCCCcEEEEeC--CCCeEEEEEecC-CCEEEEEEccC
Q 008467 507 LASGSLDKSMHIWSL--KEGKIVKTYTGN-GGIFEVCWNKE 544 (564)
Q Consensus 507 lasgs~dg~i~iw~~--~~~~~~~~~~~~-~~i~~~~w~~~ 544 (564)
|+.++.++.+.+|.+ .+|+....+..+ +.+.+++|+|-
T Consensus 386 i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 386 IIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 999999998888875 357777777653 45788999985
No 196
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=9.7e-16 Score=133.03 Aligned_cols=213 Identities=17% Similarity=0.280 Sum_probs=161.9
Q ss_pred CEEEEEeCCCCCEEEEeeCCCcEEEEECCCc----------ceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcC
Q 008467 318 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE----------EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG 387 (564)
Q Consensus 318 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 387 (564)
.|++-+|+|.+++|++|+.+|+|.+..+.+- ..+-.++.|.+++..+.+.++ |..++.||.|+-|...
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~--~Lls~gdG~V~gw~W~ 89 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD--FLLSGGDGLVYGWEWN 89 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh--heeeccCceEEEeeeh
Confidence 4666789999999999999999999987531 223345788999999988744 4445567999888765
Q ss_pred CCc-------------eeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCC
Q 008467 388 ENR-------------PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 454 (564)
Q Consensus 388 ~~~-------------~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~ 454 (564)
+.. |.++=.-.--+|+++-..|..+-++.++.|+.+..||+.+++..+++++|+..+.++.-.....
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG 169 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence 421 1111011123689999999888888888999999999999999999999999999997633221
Q ss_pred CCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC----------CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 008467 455 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH----------REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 524 (564)
Q Consensus 455 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h----------~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~ 524 (564)
-++||+.||++||||.++++++..+... ...|-+++- +..||++|+.- .+.+|+++..
T Consensus 170 ---------qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp-~lslwhLrss 237 (325)
T KOG0649|consen 170 ---------QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGP-KLSLWHLRSS 237 (325)
T ss_pred ---------ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCC-ceeEEeccCC
Confidence 4789999999999999999988776422 124556655 45599887755 5899999999
Q ss_pred eEEEEEecCCCEEEEEEccC
Q 008467 525 KIVKTYTGNGGIFEVCWNKE 544 (564)
Q Consensus 525 ~~~~~~~~~~~i~~~~w~~~ 544 (564)
+...+|.-.+.+-.+.|..|
T Consensus 238 e~t~vfpipa~v~~v~F~~d 257 (325)
T KOG0649|consen 238 ESTCVFPIPARVHLVDFVDD 257 (325)
T ss_pred CceEEEecccceeEeeeecc
Confidence 99999988888888888543
No 197
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.74 E-value=9.3e-18 Score=158.13 Aligned_cols=227 Identities=21% Similarity=0.343 Sum_probs=190.3
Q ss_pred EEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCC
Q 008467 320 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ 399 (564)
Q Consensus 320 ~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~ 399 (564)
+.+.++.+|.+|+.|+.-|.|..+|..++.+...+.. ...+.++.|..+..|++....+.+++||-... -+.-++. .
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~Gt-ElHClk~-~ 209 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQKKYVYVYDNNGT-ELHCLKR-H 209 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhhceEEEecCCCc-EEeehhh-c
Confidence 5688999999999999999999999999987765543 23567888887777777788889999986433 2222332 3
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 008467 400 GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 479 (564)
Q Consensus 400 ~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 479 (564)
..|..+.|-|..-+|+++++.|.++--|+.+++.+..+..-.+.+..++-.|-.. ++-.|...|+|.+|..
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na---------Vih~GhsnGtVSlWSP 280 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA---------VIHLGHSNGTVSLWSP 280 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc---------eEEEcCCCceEEecCC
Confidence 4688899999999999999999999999999999999988888888888777654 7888999999999999
Q ss_pred CCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEE
Q 008467 480 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCV 559 (564)
Q Consensus 480 ~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v 559 (564)
.+.+.+..+..|.++|.+|++.++|+|+||.|.|..|+|||++.-..+.++....+...+++|..| .||++.++ .|.|
T Consensus 281 ~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~G~-~v~i 358 (545)
T KOG1272|consen 281 NSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALSYGD-HVQI 358 (545)
T ss_pred CCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeeecCC-eeee
Confidence 998888888899999999999999999999999999999999988878887766677889998877 56666555 6777
Q ss_pred E
Q 008467 560 L 560 (564)
Q Consensus 560 ~ 560 (564)
|
T Consensus 359 w 359 (545)
T KOG1272|consen 359 W 359 (545)
T ss_pred e
Confidence 7
No 198
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=6.8e-16 Score=158.88 Aligned_cols=276 Identities=20% Similarity=0.290 Sum_probs=200.0
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCC---CCEEEEEeCC--CCCEEEEeeCCCcEEEEECCC---
Q 008467 277 DVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHK---GPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKT--- 347 (564)
Q Consensus 277 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~---~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~--- 347 (564)
+-..+.|+|=...++++...-.|+|||.+ +.....|..+. ..|+.+.+-. +...+++|+.||.|+||+-..
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 34567788877889998888899999964 44544454332 4578887754 345789999999999996432
Q ss_pred --cceeEEEee-------cccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEec-CCCcceEEEEECC-CCCEEE
Q 008467 348 --EEWKQQFEF-------HSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDP-TGSLLA 415 (564)
Q Consensus 348 --~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~v~~~~-~~~~la 415 (564)
.+++..+.. ..+...-++|... ..+.+++.-..|++||......+..+. +...-|+++.-+. .|+.++
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence 223333321 1122356788644 455666667789999998877666554 3344567665543 469999
Q ss_pred EEeCCCcEEEEeCCCC---eeeeeccccccc--EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEE
Q 008467 416 SCSDDVTAKIWNMKQD---KYVHDLREHSKE--IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSL 488 (564)
Q Consensus 416 s~s~dg~i~iwd~~~~---~~~~~~~~~~~~--i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~ 488 (564)
.|-.||.+|+||.+.. ..+...+.|+.. |..+.+.+.|-. -|++|+.||.|++||++.... ..++
T Consensus 1226 AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~--------elvSgs~~G~I~~~DlR~~~~e~~~~i 1297 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLG--------ELVSGSQDGDIQLLDLRMSSKETFLTI 1297 (1387)
T ss_pred EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCc--------ceeeeccCCeEEEEecccCccccccee
Confidence 9999999999998754 346677888877 999999887753 489999999999999997422 2233
Q ss_pred eCCC--C-CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec--------CCCEEEEEEccCCCEEEEEEcCCcE
Q 008467 489 NGHR--E-PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG--------NGGIFEVCWNKEGDKIAACFANHTV 557 (564)
Q Consensus 489 ~~h~--~-~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~--------~~~i~~~~w~~~g~~la~~~~~~~v 557 (564)
..|. + ..+++..+++...+|+|+. +.|+||++... .+..+.. .+.+.+++|+|---.||+|+.|..|
T Consensus 1298 v~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1298 VAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTV 1375 (1387)
T ss_pred eeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh-hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceE
Confidence 3343 3 4899999999999999999 99999998643 3333221 3457899999999999999999999
Q ss_pred EEEEe
Q 008467 558 CVLDF 562 (564)
Q Consensus 558 ~v~~~ 562 (564)
+||..
T Consensus 1376 ~iYs~ 1380 (1387)
T KOG1517|consen 1376 SIYSC 1380 (1387)
T ss_pred EEeec
Confidence 99964
No 199
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.72 E-value=7.6e-16 Score=137.08 Aligned_cols=230 Identities=26% Similarity=0.472 Sum_probs=163.8
Q ss_pred cCCccceEEEEECCCC-----CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-C
Q 008467 213 EGHTSEVCACAWSPAG-----SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-E 286 (564)
Q Consensus 213 ~~h~~~V~~~~~sp~~-----~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~ 286 (564)
..|.-+++.+.|.|+. .+|||. +..+|+|.+....... . .. ..+... .......++|+.+|+. +
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~--~--~~--~~L~~~--kns~~~aPlTSFDWne~d 162 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRV--E--LQ--SVLNNN--KNSEFCAPLTSFDWNEVD 162 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCce--e--hh--hhhccC--cccccCCcccccccccCC
Confidence 3577889999999975 366664 4589999986421100 0 00 001111 1123356899999997 7
Q ss_pred CCEEEEEeCCCeEEEEECCC----ceeEeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCcceeEEE-eec--c
Q 008467 287 GTLLATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQF-EFH--S 358 (564)
Q Consensus 287 g~~l~sg~~dg~i~vw~~~~----~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~--~ 358 (564)
-+++.+.+-|-+..||+.+. ..+..+..|..+|+.++|...+ +.|++++.||+||++|++..+-...+ +.. .
T Consensus 163 p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~ 242 (364)
T KOG0290|consen 163 PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPS 242 (364)
T ss_pred cceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCC
Confidence 78999999999999999754 3577889999999999999866 46899999999999999876533322 211 2
Q ss_pred cCeEEEEcCCC--ceEEEE-eCCCeEEEEEcCC-CceeeEecCCCcceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCee
Q 008467 359 GPTLDVDWRNN--VSFATS-STDNMIYVCKIGE-NRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKY 433 (564)
Q Consensus 359 ~~~~~~~~~~~--~~~~~~-~~d~~i~~~~~~~-~~~~~~~~~h~~~i~~v~~~~~~-~~las~s~dg~i~iwd~~~~~~ 433 (564)
.+.+-+.|... ..+++- .....|.+.|++. ..|+..+++|.+.|+.++|.|.. ..|.||++|..+-|||+.+.-.
T Consensus 243 ~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 243 TPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred CcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 35667778543 223333 3445678888875 45888999999999999999964 6799999999999999875322
Q ss_pred ------eeecccccccEEEEEEccCC
Q 008467 434 ------VHDLREHSKEIYTIRWSPTG 453 (564)
Q Consensus 434 ------~~~~~~~~~~i~~i~~~p~~ 453 (564)
+.... ..++|..+.|+|..
T Consensus 323 ~~~~dPilay~-a~~EVNqi~Ws~~~ 347 (364)
T KOG0290|consen 323 ENGEDPILAYT-AGGEVNQIQWSSSQ 347 (364)
T ss_pred cCCCCchhhhh-ccceeeeeeecccC
Confidence 11122 45789999998754
No 200
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=8e-17 Score=152.80 Aligned_cols=290 Identities=23% Similarity=0.360 Sum_probs=210.2
Q ss_pred eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC--CC
Q 008467 210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EG 287 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g 287 (564)
..|.+|.+.|+.+.|+..|..|+|||.|..+.+||+..+....... .+|...|--..|-| +.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~----------------SGH~~NvfQaKFiP~s~d 199 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE----------------SGHCNNVFQAKFIPFSGD 199 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc----------------cccccchhhhhccCCCCC
Confidence 3578999999999999999999999999999999998754321111 12233344344544 34
Q ss_pred CEEEEEeCCCeEEEEECC--Cce--eEeecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCcceeEEEeec--ccC
Q 008467 288 TLLATGSYDGQARIWSTN--GDL--KCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFH--SGP 360 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~--~~~--~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~--~~~ 360 (564)
..+++++.||.+|+=... +.. ...+..|.++|.-++.-|... -|++++.|+.+.-.|++.+.....+.+. ..+
T Consensus 200 ~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~ 279 (559)
T KOG1334|consen 200 RTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK 279 (559)
T ss_pred cCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCc
Confidence 678899999999987642 322 345778999999999998775 4899999999999999876544333221 111
Q ss_pred ------eEEEEcCCCceEEEEeCCCeEEEEEcCC------CceeeEecCCC------cceEEEEECCCCCEEEEEeCCCc
Q 008467 361 ------TLDVDWRNNVSFATSSTDNMIYVCKIGE------NRPIKTFAGHQ------GEVNCVKWDPTGSLLASCSDDVT 422 (564)
Q Consensus 361 ------~~~~~~~~~~~~~~~~~d~~i~~~~~~~------~~~~~~~~~h~------~~i~~v~~~~~~~~las~s~dg~ 422 (564)
.+.++..+...|++++.|..+++|+... ..++..|..|. -.|+|++|+.++.-|.+.-.|-.
T Consensus 280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~ 359 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED 359 (559)
T ss_pred cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc
Confidence 2344556677899999999999998753 22344444332 35899999988877777777888
Q ss_pred EEEEeCCC--C----------eeeee-cccccc--cEEEEEE-ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE
Q 008467 423 AKIWNMKQ--D----------KYVHD-LREHSK--EIYTIRW-SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY 486 (564)
Q Consensus 423 i~iwd~~~--~----------~~~~~-~~~~~~--~i~~i~~-~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 486 (564)
|.++.-.. + .++.. +++|.. .|..+-| -|.. .+++|||.-|.|.||+-.+++.+.
T Consensus 360 IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs---------EyVvSGSDCGhIFiW~K~t~eii~ 430 (559)
T KOG1334|consen 360 IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS---------EYVVSGSDCGHIFIWDKKTGEIIR 430 (559)
T ss_pred eEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc---------ceEEecCccceEEEEecchhHHHH
Confidence 98885321 1 22222 566643 3444433 2322 378999999999999999999888
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 008467 487 SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 524 (564)
Q Consensus 487 ~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~ 524 (564)
-+.+...-|+||--+|--..||+.|-|.-|+||...+.
T Consensus 431 ~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 431 FMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HhhcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 88887778999999999999999999999999987543
No 201
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=3.7e-15 Score=136.61 Aligned_cols=239 Identities=19% Similarity=0.371 Sum_probs=162.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecC-CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467 276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSK-HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 354 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 354 (564)
.++..++|++.-..++++..|-.||+|+.+......+.. ....|++++|.|.+..-++.+.-+-|.+|.........
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~-- 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNAN-- 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccc--
Confidence 457889999988889999999999999987665555532 34679999999987655555556779999764211000
Q ss_pred eecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCC--ceeeEecCCCcceEEEEECCCCCEEEEEeC-CCcEEEEeCCCC
Q 008467 355 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN--RPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQD 431 (564)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~--~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg~i~iwd~~~~ 431 (564)
. .++ .... ..+....|| ..|++++|++||..++++|- |..|.|||..++
T Consensus 177 -----r-------------------~~~---~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg 228 (445)
T KOG2139|consen 177 -----R-------------------NIR---MMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG 228 (445)
T ss_pred -----c-------------------ccc---cccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCC
Confidence 0 000 0001 112234456 68999999999999999886 678999999988
Q ss_pred eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEEEEeCCCCCEEEEEEcCCCCEEE-E
Q 008467 432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTGEYLA-S 509 (564)
Q Consensus 432 ~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~i~~~~~spdg~~la-s 509 (564)
..+.-...-.+.+.-+.|+|++. +|..+..|+..++|+... ..+..-.. ..+.|...+|+|+|++|. +
T Consensus 229 ~~~pL~~~glgg~slLkwSPdgd---------~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~ 298 (445)
T KOG2139|consen 229 QKIPLIPKGLGGFSLLKWSPDGD---------VLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFA 298 (445)
T ss_pred CcccccccCCCceeeEEEcCCCC---------EEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEE
Confidence 77654434456788999999986 677889999999996442 22222222 234899999999998875 3
Q ss_pred EeCCCcEEEEeCC----CCe-----------EEEEE------ec----CCCEEEEEEccCCCEEEEEEcCCc
Q 008467 510 GSLDKSMHIWSLK----EGK-----------IVKTY------TG----NGGIFEVCWNKEGDKIAACFANHT 556 (564)
Q Consensus 510 gs~dg~i~iw~~~----~~~-----------~~~~~------~~----~~~i~~~~w~~~g~~la~~~~~~~ 556 (564)
.+..-. +|.+. .+. ++..+ .+ .+++-.++|+|.|.+||+.+..+.
T Consensus 299 ~sgsp~--lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 299 CSGSPR--LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred EcCCce--EEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 333333 33321 111 11111 11 245778999999999999987654
No 202
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.69 E-value=4.8e-14 Score=139.71 Aligned_cols=266 Identities=15% Similarity=0.220 Sum_probs=161.2
Q ss_pred cceEEEEECCCCCEEEEEE-CCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 008467 217 SEVCACAWSPAGSLLASGS-GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 295 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs-~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~ 295 (564)
+....++++|++++|+.++ .++.|.+|++.... .+. ..... ........++|+|+|+++++++.
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g--------~l~--~~~~~-----~~~~~p~~i~~~~~g~~l~v~~~ 99 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG--------ALT--FAAES-----PLPGSPTHISTDHQGRFLFSASY 99 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCC--------ceE--Eeeee-----cCCCCceEEEECCCCCEEEEEEc
Confidence 4566789999999887665 58889999985211 000 11111 01124568999999998888765
Q ss_pred -CCeEEEEECC--Cce---eEeecCCCCCEEEEEeCCCCCEEEEe-eCCCcEEEEECCCcceeEEEeecccCeEEEEcCC
Q 008467 296 -DGQARIWSTN--GDL---KCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 368 (564)
Q Consensus 296 -dg~i~vw~~~--~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 368 (564)
++.|.+|+.+ +.. ...+. +.....+++++|++++++++ ..++.|.+||+.+........
T Consensus 100 ~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~------------- 165 (330)
T PRK11028 100 NANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE------------- 165 (330)
T ss_pred CCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-------------
Confidence 7899999875 222 22222 22345778899999988654 456899999987532111000
Q ss_pred CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CCcEEEEeCCC--C--eeeeeccccc--
Q 008467 369 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQ--D--KYVHDLREHS-- 441 (564)
Q Consensus 369 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg~i~iwd~~~--~--~~~~~~~~~~-- 441 (564)
...+.... ......++|+|+|++++++.. +++|.+|+++. + +.+..+..+.
T Consensus 166 --------------------~~~~~~~~--g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~ 223 (330)
T PRK11028 166 --------------------PAEVTTVE--GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD 223 (330)
T ss_pred --------------------CCceecCC--CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc
Confidence 00000001 122456899999999877776 99999999873 2 2233332211
Q ss_pred ----ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC---CCCEEEEEEcCCCCEEEEEeC-C
Q 008467 442 ----KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH---REPVYSLAFSPTGEYLASGSL-D 513 (564)
Q Consensus 442 ----~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h---~~~i~~~~~spdg~~lasgs~-d 513 (564)
.....+.++|++. .++++...++.|.+|++.......++.++ ......++|+|||++|+++.. +
T Consensus 224 ~~~~~~~~~i~~~pdg~--------~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~ 295 (330)
T PRK11028 224 FSDTRWAADIHITPDGR--------HLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS 295 (330)
T ss_pred CCCCccceeEEECCCCC--------EEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccC
Confidence 1123467777764 33443345789999998643221222222 123457899999999988775 8
Q ss_pred CcEEEEeCC--CCeE--EEEEecCCCEEEEEE
Q 008467 514 KSMHIWSLK--EGKI--VKTYTGNGGIFEVCW 541 (564)
Q Consensus 514 g~i~iw~~~--~~~~--~~~~~~~~~i~~~~w 541 (564)
++|.+|++. +|.+ +..+.......++++
T Consensus 296 ~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 296 HHISVYEIDGETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred CcEEEEEEcCCCCcEEEccccccCCCceEEEE
Confidence 999999874 4443 333333333344433
No 203
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.69 E-value=8e-15 Score=132.47 Aligned_cols=236 Identities=20% Similarity=0.325 Sum_probs=171.5
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467 217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 296 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 296 (564)
.+|+|.||++|++.+|.+-....+.||....... +. .......|...|+.++|+|..+.|++++.|
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-----------w~---~~htls~Hd~~vtgvdWap~snrIvtcs~d 76 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-----------WE---PAHTLSEHDKIVTGVDWAPKSNRIVTCSHD 76 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCC-----------ce---eceehhhhCcceeEEeecCCCCceeEccCC
Confidence 6799999999999999999999999998654321 00 111234567889999999999999999999
Q ss_pred CeEEEEEC-CC-c--eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceE
Q 008467 297 GQARIWST-NG-D--LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF 372 (564)
Q Consensus 297 g~i~vw~~-~~-~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (564)
...+||.. .+ . ....+..++..++++.|+|.++.|++||.-+.|.||-.+... +
T Consensus 77 rnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN---------------d------- 134 (361)
T KOG1523|consen 77 RNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN---------------D------- 134 (361)
T ss_pred CCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc---------------c-------
Confidence 99999986 33 2 233567799999999999999999999999999988654321 0
Q ss_pred EEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC------------------Ceee
Q 008467 373 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ------------------DKYV 434 (564)
Q Consensus 373 ~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~------------------~~~~ 434 (564)
|-+. +.+ -+.+.+.|++++|+|++-+|+.||.|+..|++..-- +...
T Consensus 135 -----------WWVs--Khi--kkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm 199 (361)
T KOG1523|consen 135 -----------WWVS--KHI--KKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLM 199 (361)
T ss_pred -----------eehh--hhh--CCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHH
Confidence 1000 001 122457899999999999999999999999997411 1122
Q ss_pred eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEEeCCCCCEEEEEEcCCCCEEEEEeCC
Q 008467 435 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSPTGEYLASGSLD 513 (564)
Q Consensus 435 ~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~~~~~spdg~~lasgs~d 513 (564)
.++....+.+..+.|+|.|. .|+-.+.|.++.+-|..... .+..+..-.-|..++.|-.+.. ++.++.|
T Consensus 200 ~E~~~~ggwvh~v~fs~sG~---------~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 200 SEASSSGGWVHGVLFSPSGN---------RLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred HhhccCCCceeeeEeCCCCC---------EeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCc-eeecCCC
Confidence 23334567799999999886 68889999999999987654 3333332336777777754433 3334444
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=9.5e-16 Score=143.59 Aligned_cols=195 Identities=25% Similarity=0.330 Sum_probs=141.6
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEE-CCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeec
Q 008467 279 TTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 357 (564)
Q Consensus 279 ~~l~~s~~g~~l~sg~~dg~i~vw~-~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 357 (564)
.+++|+++|..+++|+.||.+|||+ .+.........|.+.|.+|.|+|+|+.|++.+.| ..+||+++++..+......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 7899999999999999999999999 5555556778899999999999999999999999 9999999988443322110
Q ss_pred ccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCC-----CEEEEEeCCCcEEEEeCCCCe
Q 008467 358 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-----SLLASCSDDVTAKIWNMKQDK 432 (564)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-----~~las~s~dg~i~iwd~~~~~ 432 (564)
. .+ ..+..+.|+.|+ .+++.-..-+.|+.|++....
T Consensus 227 ~---------k~------------------------------~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~ 267 (398)
T KOG0771|consen 227 S---------KD------------------------------EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWS 267 (398)
T ss_pred c---------cc------------------------------hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeec
Confidence 0 00 011223333333 122222233344444432211
Q ss_pred -----eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE-eCCCCCEEEEEEcCCCCE
Q 008467 433 -----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGEY 506 (564)
Q Consensus 433 -----~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~~~~~spdg~~ 506 (564)
.......-...|.+++.+++|. ++|.|+.||.|-|++..+-++++.. ..|...|+.+.|+||.++
T Consensus 268 ~~~~l~~~~~~~~~~siSsl~VS~dGk---------f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~ 338 (398)
T KOG0771|consen 268 GSNFLRLRKKIKRFKSISSLAVSDDGK---------FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRY 338 (398)
T ss_pred cccccchhhhhhccCcceeEEEcCCCc---------EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCc
Confidence 1111122335689999999986 8999999999999999887776554 679999999999999999
Q ss_pred EEEEeCCCcEEEEeCC
Q 008467 507 LASGSLDKSMHIWSLK 522 (564)
Q Consensus 507 lasgs~dg~i~iw~~~ 522 (564)
+++-+.|.++.+..+.
T Consensus 339 ~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 339 LASVSSDNEAAVTKLA 354 (398)
T ss_pred ccccccCCceeEEEEe
Confidence 9999999988888765
No 205
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.68 E-value=7.6e-16 Score=150.30 Aligned_cols=234 Identities=18% Similarity=0.328 Sum_probs=169.5
Q ss_pred CCCEEEE--EeCCCeEEEEECC--CceeE-eec--CCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCcceeEEEeec
Q 008467 286 EGTLLAT--GSYDGQARIWSTN--GDLKC-TLS--KHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 357 (564)
Q Consensus 286 ~g~~l~s--g~~dg~i~vw~~~--~~~~~-~~~--~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 357 (564)
+...+|+ ++.-|.|-|++++ |++.. .+. .....|+.+.|+| +..+|+.++.||.|++|.+..+.....
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~---- 665 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN---- 665 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc----
Confidence 4445554 3556899999865 33221 111 2345799999999 557899999999999998876542211
Q ss_pred ccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeeeee
Q 008467 358 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHD 436 (564)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~-~~~las~s~dg~i~iwd~~~~~~~~~ 436 (564)
...|-..+.+|...|.++.|+|- ...|++++.|.+|++||+.+.+....
T Consensus 666 ------------------------------~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~ 715 (1012)
T KOG1445|consen 666 ------------------------------EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSR 715 (1012)
T ss_pred ------------------------------cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhe
Confidence 13456678899999999999995 46789999999999999999998889
Q ss_pred cccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEEeCC-CCCEEEEEEcCCCCEEEEEeCCC
Q 008467 437 LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNGH-REPVYSLAFSPTGEYLASGSLDK 514 (564)
Q Consensus 437 ~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~h-~~~i~~~~~spdg~~lasgs~dg 514 (564)
+.+|+..|..++|+|+|. .+|+.+.||+|++|+.+++.. ++.-++- ...--.|.|.-||+++++.+.|.
T Consensus 716 l~gHtdqIf~~AWSpdGr---------~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 716 LVGHTDQIFGIAWSPDGR---------RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred eccCcCceeEEEECCCCc---------ceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence 999999999999999997 699999999999999987653 4332221 12234678999999999888774
Q ss_pred ----cEEEEeCCCCe--EEEE--EecCCCEEEEEEccCCCE-EEEEEcCCcEEEEEe
Q 008467 515 ----SMHIWSLKEGK--IVKT--YTGNGGIFEVCWNKEGDK-IAACFANHTVCVLDF 562 (564)
Q Consensus 515 ----~i~iw~~~~~~--~~~~--~~~~~~i~~~~w~~~g~~-la~~~~~~~v~v~~~ 562 (564)
.|.+|+.++-. .+.+ ++....+.--.+++|.+. +.+|-+|..|..|.+
T Consensus 787 ~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 787 SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEe
Confidence 68899987533 2222 222223333456777764 456666777777754
No 206
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.68 E-value=5.7e-14 Score=138.95 Aligned_cols=305 Identities=16% Similarity=0.179 Sum_probs=189.8
Q ss_pred EEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCe-EEEEECCCCCEEEEEeCCCeEEEEECC-Ccee
Q 008467 232 ASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV-TTLDWNGEGTLLATGSYDGQARIWSTN-GDLK 309 (564)
Q Consensus 232 asgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V-~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~ 309 (564)
++-..++.+.+.|..+.+.. ..... ...+ ..+.++|||+++.+++.||.|.++|+. .+..
T Consensus 10 V~~~~~~~v~viD~~t~~~~-------------~~i~~-----~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v 71 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVV-------------ARIPT-----GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVV 71 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEE-------------EEEE------STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEE
T ss_pred EEecCCCEEEEEECCCCeEE-------------EEEcC-----CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEE
Confidence 45567899999997664321 11111 1223 346799999999999999999999986 4455
Q ss_pred EeecCCCCCEEEEEeCCCCCEEEEee-CCCcEEEEECCCcceeEEEeeccc-------CeEEE-EcCCCceEEEEeC-CC
Q 008467 310 CTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTEEWKQQFEFHSG-------PTLDV-DWRNNVSFATSST-DN 379 (564)
Q Consensus 310 ~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~-d~ 379 (564)
.++..-. ...+++++++|++++++. .++++.++|.++.+.++.+..... .+..+ .-.....|+..-. .+
T Consensus 72 ~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~ 150 (369)
T PF02239_consen 72 ATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTG 150 (369)
T ss_dssp EEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTT
T ss_pred EEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCC
Confidence 5555433 457899999999988665 689999999999998887654321 22333 2334455665555 47
Q ss_pred eEEEEEcCCCceee-EecCCCcceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCeeeeecc----cccccEEEE------
Q 008467 380 MIYVCKIGENRPIK-TFAGHQGEVNCVKWDPTGSLLASC-SDDVTAKIWNMKQDKYVHDLR----EHSKEIYTI------ 447 (564)
Q Consensus 380 ~i~~~~~~~~~~~~-~~~~h~~~i~~v~~~~~~~~las~-s~dg~i~iwd~~~~~~~~~~~----~~~~~i~~i------ 447 (564)
.|.+.+....+++. .............|+|++++++.+ ..+..|-++|.++++.+..+. .|..+...+
T Consensus 151 ~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g 230 (369)
T PF02239_consen 151 EIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFG 230 (369)
T ss_dssp EEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTE
T ss_pred eEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcc
Confidence 88888876655433 222223345678999999987654 457789999999988765442 233333322
Q ss_pred -EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE----eCCCcEEEEeCC
Q 008467 448 -RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG----SLDKSMHIWSLK 522 (564)
Q Consensus 448 -~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasg----s~dg~i~iw~~~ 522 (564)
-|...+.. . ..++.-..+.+.+||..+.+.+.++.....+ .-+.-+|+++++.+. ...++|.++|.+
T Consensus 231 ~vw~~~~~~------~-~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~ 302 (369)
T PF02239_consen 231 PVWATSGLG------Y-FAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKK 302 (369)
T ss_dssp EEEEEEBSS------S-SEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECC
T ss_pred eEEeecccc------c-eecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECc
Confidence 13222111 1 1212222346778999999999999877777 788889999999887 445899999999
Q ss_pred CCeEEEEEecCCC--EEEEEEccCCCEEEEEEc--CCcEEEEEee
Q 008467 523 EGKIVKTYTGNGG--IFEVCWNKEGDKIAACFA--NHTVCVLDFR 563 (564)
Q Consensus 523 ~~~~~~~~~~~~~--i~~~~w~~~g~~la~~~~--~~~v~v~~~~ 563 (564)
+.+.+.++....+ +..+.|++||+.+-++.. ++.|.|||-+
T Consensus 303 tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~ 347 (369)
T PF02239_consen 303 TLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAK 347 (369)
T ss_dssp GTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETT
T ss_pred CcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECC
Confidence 9988888765444 999999999996665544 3469999853
No 207
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1e-14 Score=136.68 Aligned_cols=195 Identities=23% Similarity=0.294 Sum_probs=143.8
Q ss_pred EEEEcCC-CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc
Q 008467 362 LDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 440 (564)
Q Consensus 362 ~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~ 440 (564)
..+++.. +..+++++.||++++|+.....++.....|.++|.++.|+|||++|++-+.| ..+||+..++..+......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 3445544 4778999999999999998888888888999999999999999999999999 9999999998666544321
Q ss_pred --cccEEEEEEccCCCCCCCCCCcEEEE-EEeCCCeEEEEeCCCCeE-----EEEEeCCCCCEEEEEEcCCCCEEEEEeC
Q 008467 441 --SKEIYTIRWSPTGSGTNNPNQQLILA-SASFDSTVKLWDVELGKL-----LYSLNGHREPVYSLAFSPTGEYLASGSL 512 (564)
Q Consensus 441 --~~~i~~i~~~p~~~~~~~~~~~~~l~-s~s~dg~i~iwd~~~~~~-----~~~~~~h~~~i~~~~~spdg~~lasgs~ 512 (564)
.-....++|+.++.. ..++++ ....-+.|+.|++...+- ......-...|.+++.|+||+++|.|+.
T Consensus 227 ~k~~~~~~cRF~~d~~~-----~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQ-----ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred ccchhhhhceecccCCC-----ceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence 223445666655432 112333 333445666666542111 1111122347999999999999999999
Q ss_pred CCcEEEEeCCCCeEEEEEec--CCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 513 DKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 513 dg~i~iw~~~~~~~~~~~~~--~~~i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
||.|.|+++.+-+.++-.+. .+-|+++.|+||.+.++.-+.+.+.+|..+
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 99999999998777666543 335899999999999998888888888755
No 208
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=3.6e-14 Score=128.27 Aligned_cols=233 Identities=15% Similarity=0.255 Sum_probs=162.5
Q ss_pred CEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeeccc--CeEEEEcCCCceEEEEeCC------CeEEEEEcCCC
Q 008467 318 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG--PTLDVDWRNNVSFATSSTD------NMIYVCKIGEN 389 (564)
Q Consensus 318 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d------~~i~~~~~~~~ 389 (564)
...+++|+.|...++.|.. .-.+||+.+.-+....-+.+.+ .+..+-++.+.....++.+ +.+.+||--..
T Consensus 7 ~~lsvs~NQD~ScFava~~-~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATD-TGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEec-CceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 4556999999888877654 4589998765322111112211 2233334555544555544 57899997777
Q ss_pred ceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC-CCeeeeeccccc--ccEEEEEEccCCCCCCCCCCcEEEE
Q 008467 390 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK-QDKYVHDLREHS--KEIYTIRWSPTGSGTNNPNQQLILA 466 (564)
Q Consensus 390 ~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~-~~~~~~~~~~~~--~~i~~i~~~p~~~~~~~~~~~~~l~ 466 (564)
+++.++. ...+|.++.+.++ .|+.. ..+.|.||... +-+.++.+.... ....++ .|... ...+..
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~--~~~~~------k~~Laf 153 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSL--CPTSN------KSLLAF 153 (346)
T ss_pred cEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEee--cCCCC------ceEEEc
Confidence 8887765 4678999999875 34333 45689999876 334444332211 112222 22211 122333
Q ss_pred EEeCCCeEEEEeCCCCeE--EEEEeCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCeEEEEEec---CCCEEEEE
Q 008467 467 SASFDSTVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLASGSLDKS-MHIWSLKEGKIVKTYTG---NGGIFEVC 540 (564)
Q Consensus 467 s~s~dg~i~iwd~~~~~~--~~~~~~h~~~i~~~~~spdg~~lasgs~dg~-i~iw~~~~~~~~~~~~~---~~~i~~~~ 540 (564)
-|-.-|.|+|-|+...+. ...+.+|...|.+++.+-+|..+||+|..|+ |+|||..+|+++..+.- ...|++++
T Consensus 154 Pg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ia 233 (346)
T KOG2111|consen 154 PGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIA 233 (346)
T ss_pred CCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEE
Confidence 355679999999986554 4678899999999999999999999999985 89999999999998864 45699999
Q ss_pred EccCCCEEEEEEcCCcEEEEEee
Q 008467 541 WNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 541 w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
|||++.+||+++..|+++||.+|
T Consensus 234 FSp~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 234 FSPNSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred eCCCccEEEEEcCCCeEEEEEee
Confidence 99999999999999999999886
No 209
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=6e-13 Score=120.50 Aligned_cols=235 Identities=23% Similarity=0.346 Sum_probs=160.2
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEECCCcee-EeecCCCCCEEEEEeCCCCCEE-EEeeCC------CcEEEEECCCc
Q 008467 277 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK-CTLSKHKGPIFSLKWNKKGDYL-LTGSCD------KTAIVWDVKTE 348 (564)
Q Consensus 277 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l-~s~s~D------~~v~iwd~~~~ 348 (564)
...+++|+.|...+++|..+| .|||+.+.-.. .....+.+.+.-+...-..++| +.|+.. +.|.|||-...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 356699999999998887765 68898764111 1111222221111111123344 344443 47999996555
Q ss_pred ceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcC-CCceeeEecCCC--cceEEEEECCCCCEEEE-EeCCCcEE
Q 008467 349 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQ--GEVNCVKWDPTGSLLAS-CSDDVTAK 424 (564)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~--~~i~~v~~~~~~~~las-~s~dg~i~ 424 (564)
.++..+.+. .++.++....+...+. ..+.|++|... +.+.+..+..-. ....+++-+.+..+||. |-.-|.|+
T Consensus 86 ~~i~el~f~-~~I~~V~l~r~riVvv--l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQ 162 (346)
T KOG2111|consen 86 RCIIELSFN-SEIKAVKLRRDRIVVV--LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQ 162 (346)
T ss_pred cEEEEEEec-cceeeEEEcCCeEEEE--ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEE
Confidence 566555543 4677777766655443 56789999887 344444443222 12333333333344443 44578999
Q ss_pred EEeCCCCee--eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCe-EEEEeCCCCeEEEEEeCC--CCCEEEEE
Q 008467 425 IWNMKQDKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST-VKLWDVELGKLLYSLNGH--REPVYSLA 499 (564)
Q Consensus 425 iwd~~~~~~--~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~h--~~~i~~~~ 499 (564)
|-|+...+. ...+.+|...|.+++..-+|. ++||+|..|+ |||||..+|..+.+++.. ...|++|+
T Consensus 163 i~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt---------~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ia 233 (346)
T KOG2111|consen 163 IVDLASTKPNAPSIINAHDSDIACVALNLQGT---------LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIA 233 (346)
T ss_pred EEEhhhcCcCCceEEEcccCceeEEEEcCCcc---------EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEE
Confidence 999876655 467889999999999998886 8999999998 799999999999998632 35799999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCC
Q 008467 500 FSPTGEYLASGSLDKSMHIWSLKEG 524 (564)
Q Consensus 500 ~spdg~~lasgs~dg~i~iw~~~~~ 524 (564)
|||++.+||++|..|+|+||.++..
T Consensus 234 FSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 234 FSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred eCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999999999999999998763
No 210
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=4.3e-14 Score=130.72 Aligned_cols=279 Identities=17% Similarity=0.290 Sum_probs=193.4
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc-------eeEe-ecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEE
Q 008467 272 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-------LKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW 343 (564)
Q Consensus 272 ~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-------~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iw 343 (564)
.+|.+.|.++.||.++++|++|+.|..+++|.++.- .+.. -..|...|+||+|+..+..+++|..+++|.+.
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH 132 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence 356788999999999999999999999999987532 1111 23467899999999999999999999999999
Q ss_pred ECCCcceeEEEeec--ccCeEEEEcC-CCceEEEEeCCCeEEEEEcCCCc-eeeEe--cCCCcceEEEEECCCC-CEEEE
Q 008467 344 DVKTEEWKQQFEFH--SGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENR-PIKTF--AGHQGEVNCVKWDPTG-SLLAS 416 (564)
Q Consensus 344 d~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~-~~~~~--~~h~~~i~~v~~~~~~-~~las 416 (564)
|+.+.+.+-.+... .+.++.++-. .+..|++.+.++.|.+|+..... ++..+ .........+.|+|.. .+|++
T Consensus 133 DiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~ 212 (609)
T KOG4227|consen 133 DIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILV 212 (609)
T ss_pred ecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEe
Confidence 99998776655433 2466666543 36788999999999999998755 33322 2223456678899965 56888
Q ss_pred EeCCCcEEEEeCCCCee-ee------ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEE
Q 008467 417 CSDDVTAKIWNMKQDKY-VH------DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSL 488 (564)
Q Consensus 417 ~s~dg~i~iwd~~~~~~-~~------~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~ 488 (564)
.+..+-+-+||.+.... +. .+......-.++.|+|.|.. |.+--.-..-.+||+-+.++ +..+
T Consensus 213 ~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q---------~msiRR~~~P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 213 NSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQ---------FMSIRRGKCPLYFDFISQRCFVLKS 283 (609)
T ss_pred ccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCe---------ehhhhccCCCEEeeeecccceeEec
Confidence 99999999999875432 11 11111222367889998752 22222222334566655333 2232
Q ss_pred eCCC-------CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----e-------------------EEEEEecCCC-EE
Q 008467 489 NGHR-------EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG----K-------------------IVKTYTGNGG-IF 537 (564)
Q Consensus 489 ~~h~-------~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~----~-------------------~~~~~~~~~~-i~ 537 (564)
. |. ..|.+++|--|- -+++|+.+=.|+||.+... . .+..+.++-. +.
T Consensus 284 D-~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~N 361 (609)
T KOG4227|consen 284 D-HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPN 361 (609)
T ss_pred c-CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccc
Confidence 2 22 236677886554 4999999999999997531 1 1122344433 46
Q ss_pred EEEEccCCCEEEEEEcCCcEEEEE
Q 008467 538 EVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 538 ~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
-+.|+|...+|++.+....+.+|.
T Consensus 362 QVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 362 QVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred ceeecCCcceEeccchhhheeccc
Confidence 799999999999888888888883
No 211
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.5e-13 Score=140.98 Aligned_cols=213 Identities=13% Similarity=0.141 Sum_probs=146.4
Q ss_pred CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeC---CCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEE
Q 008467 297 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC---DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 373 (564)
Q Consensus 297 g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (564)
..|.+||.++.....+..|..++.+.+|+|+|+.|+..+. +..|.+||+.++...
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~---------------------- 239 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE---------------------- 239 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE----------------------
Confidence 3788888888777778888899999999999999887653 357888888765421
Q ss_pred EEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEE-EEeCCCc--EEEEeCCCCeeeeecccccccEEEEEEc
Q 008467 374 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVT--AKIWNMKQDKYVHDLREHSKEIYTIRWS 450 (564)
Q Consensus 374 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~la-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~i~~i~~~ 450 (564)
.+..+.+.+.+.+|+|||+.|+ +.+.++. |.+||+.++.. ..+..+........|+
T Consensus 240 --------------------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s 298 (435)
T PRK05137 240 --------------------LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS 298 (435)
T ss_pred --------------------EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc
Confidence 1122334556789999998765 5666665 66678877654 4455566566778999
Q ss_pred cCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCe
Q 008467 451 PTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHIWSLKEGK 525 (564)
Q Consensus 451 p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d---g~i~iw~~~~~~ 525 (564)
|+|. .++.+...+| .|.+||+..++. ..+..+...+...+|||||++|+..+.+ ..|.+|++.++.
T Consensus 299 pDG~--------~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 299 PDGS--------QIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred CCCC--------EEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 9875 2333333333 688888876543 3444344556778999999999877653 368888986554
Q ss_pred EEEEEecCCCEEEEEEccCCCEEEEEEcCC------cEEEEEe
Q 008467 526 IVKTYTGNGGIFEVCWNKEGDKIAACFANH------TVCVLDF 562 (564)
Q Consensus 526 ~~~~~~~~~~i~~~~w~~~g~~la~~~~~~------~v~v~~~ 562 (564)
. ..+.....+..++|+|||+.|+....++ .+.++|+
T Consensus 370 ~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 370 E-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred e-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 3 3443333567889999999998765432 4566664
No 212
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.64 E-value=3.3e-14 Score=127.87 Aligned_cols=149 Identities=21% Similarity=0.514 Sum_probs=110.4
Q ss_pred EEEECCCCCEEEEEeC----------CCcEEEEeCCCC-eeeeeccc-ccccEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008467 404 CVKWDPTGSLLASCSD----------DVTAKIWNMKQD-KYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFD 471 (564)
Q Consensus 404 ~v~~~~~~~~las~s~----------dg~i~iwd~~~~-~~~~~~~~-~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d 471 (564)
.+.|+|+|..|+.-.. -+...||.++.. ..+..+.- ..++|.+++|+|++. ...+++|..+
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~-------~favi~g~~~ 82 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGN-------EFAVIYGSMP 82 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCC-------EEEEEEccCC
Confidence 5789999987654332 123556655322 23333332 345799999999875 2345667788
Q ss_pred CeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEE
Q 008467 472 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKI 548 (564)
Q Consensus 472 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d---g~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~l 548 (564)
+.|.+||++ ++.+..+. ..+++.|.|||+|++||+|+.+ |.|.+||+++.+.+..+... .+..++|+|||++|
T Consensus 83 ~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~ 158 (194)
T PF08662_consen 83 AKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYL 158 (194)
T ss_pred cccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEE
Confidence 899999997 77777764 4578999999999999998754 67999999999988887644 57899999999999
Q ss_pred EEEEc------CCcEEEEEee
Q 008467 549 AACFA------NHTVCVLDFR 563 (564)
Q Consensus 549 a~~~~------~~~v~v~~~~ 563 (564)
+++.. |..+.||++.
T Consensus 159 ~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 159 ATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEEEeccceeccccEEEEEec
Confidence 98864 5667888863
No 213
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.64 E-value=7.4e-15 Score=141.19 Aligned_cols=220 Identities=21% Similarity=0.369 Sum_probs=158.0
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCceeEe-e----cCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCcceeEEEeec
Q 008467 284 NGEGTLLATGSYDGQARIWSTNGDLKCT-L----SKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFH 357 (564)
Q Consensus 284 s~~g~~l~sg~~dg~i~vw~~~~~~~~~-~----~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 357 (564)
.+.+--++.|-..|.+.+.+........ + .-.+..|++++|-|.+ ..|+.+-.+|.+.++|..... ..
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~------~~ 255 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC------GA 255 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc------cC
Confidence 3566778888888999888754321111 1 1134789999999866 457778889999999862110 00
Q ss_pred ccCeEEEEcCCCceEEEEeCCCeEEEEEcC-CCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeee
Q 008467 358 SGPTLDVDWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 436 (564)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~ 436 (564)
..+.. ........|. |..|.-. ...|+..+.--++.|+..+|+|||++||+.|.||.+||||..+.+.+..
T Consensus 256 t~p~~-~~~k~~~~f~-------i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~ 327 (636)
T KOG2394|consen 256 TAPSY-QALKDGDQFA-------ILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV 327 (636)
T ss_pred CCCcc-cccCCCCeeE-------EeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH
Confidence 00000 0001111221 1122111 1245544444556899999999999999999999999999999888877
Q ss_pred cccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcC--------------
Q 008467 437 LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP-------------- 502 (564)
Q Consensus 437 ~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp-------------- 502 (564)
++..-+...|++|+|+|. +|++|+.|.-|.||.+..++++..-.+|...|..|+|.|
T Consensus 328 mkSYFGGLLCvcWSPDGK---------yIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~ 398 (636)
T KOG2394|consen 328 MKSYFGGLLCVCWSPDGK---------YIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGM 398 (636)
T ss_pred HHhhccceEEEEEcCCcc---------EEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccc
Confidence 777778899999999997 899999999999999999999999999999999999983
Q ss_pred -----------------C----C-------------CEEEEEeCCCcEEEEeCCCCeE
Q 008467 503 -----------------T----G-------------EYLASGSLDKSMHIWSLKEGKI 526 (564)
Q Consensus 503 -----------------d----g-------------~~lasgs~dg~i~iw~~~~~~~ 526 (564)
+ + ..+.+.+.|-.+.+||+..-.+
T Consensus 399 ~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 399 DSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred cccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence 1 1 2467888999999999865443
No 214
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.3e-14 Score=132.24 Aligned_cols=185 Identities=21% Similarity=0.392 Sum_probs=142.0
Q ss_pred ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCeeee--eccccc-ccE
Q 008467 370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVH--DLREHS-KEI 444 (564)
Q Consensus 370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~~~las~s~dg~i~iwd~~~~~~~~--~~~~~~-~~i 444 (564)
..++++-..|.|++|+..+++.+..|+++...++.++|.. ....+.+|+.||+||+||++...... .+.+++ .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 3467777889999999999999999999999999999976 45678999999999999998765433 333444 334
Q ss_pred EEEEEccCCCCCCCCCCcEEEEEEe----CCCeEEEEeCCCCeE-EEEE-eCCCCCEEEEEEcCCC-CEEEEEeCCCcEE
Q 008467 445 YTIRWSPTGSGTNNPNQQLILASAS----FDSTVKLWDVELGKL-LYSL-NGHREPVYSLAFSPTG-EYLASGSLDKSMH 517 (564)
Q Consensus 445 ~~i~~~p~~~~~~~~~~~~~l~s~s----~dg~i~iwd~~~~~~-~~~~-~~h~~~i~~~~~spdg-~~lasgs~dg~i~ 517 (564)
.+++-...+ .+++.|. .|-.|.+||++..+. +..+ ..|...|+++.|+|.. .+|++||.||.|.
T Consensus 121 ~~ld~nck~---------~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvn 191 (376)
T KOG1188|consen 121 ICLDLNCKK---------NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVN 191 (376)
T ss_pred eEeeccCcC---------CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEE
Confidence 444432221 2566554 366799999998766 4444 5699999999999975 7899999999999
Q ss_pred EEeCCCC----eEEEEEecCCCEEEEEEccCC-CEEEEEEcCCcEEEEEee
Q 008467 518 IWSLKEG----KIVKTYTGNGGIFEVCWNKEG-DKIAACFANHTVCVLDFR 563 (564)
Q Consensus 518 iw~~~~~----~~~~~~~~~~~i~~~~w~~~g-~~la~~~~~~~v~v~~~~ 563 (564)
+||++.- .++.++.....|-.+.|..++ ++|..-+..++.++|++.
T Consensus 192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE 242 (376)
T ss_pred eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence 9999753 255566666679999999988 566666778899999874
No 215
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.63 E-value=1.6e-13 Score=143.95 Aligned_cols=264 Identities=19% Similarity=0.284 Sum_probs=173.1
Q ss_pred CCceeEccCCccceEEEEECCC-CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEEC
Q 008467 206 NSDVTILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 284 (564)
Q Consensus 206 ~~~~~~l~~h~~~V~~~~~sp~-~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s 284 (564)
..-++.|..|...|..++.++. +.+++|||.||+||+|++..-.... +....... .......+.++...
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~----~s~rS~lt------ys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG----GSARSELT------YSPEGSRVEKVTMC 1107 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc----ceeeeeEE------EeccCCceEEEEec
Confidence 3446778889999998888876 5999999999999999986422111 00011111 11235678899999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCc--ee------EeecCC-CCCEEEEE-eCC-CC-CEEEEeeCCCcEEEEECCCcceeE
Q 008467 285 GEGTLLATGSYDGQARIWSTNGD--LK------CTLSKH-KGPIFSLK-WNK-KG-DYLLTGSCDKTAIVWDVKTEEWKQ 352 (564)
Q Consensus 285 ~~g~~l~sg~~dg~i~vw~~~~~--~~------~~~~~h-~~~V~~l~-~~~-~~-~~l~s~s~D~~v~iwd~~~~~~~~ 352 (564)
+.|+.+|.|+.||.|++.+.+.. .. .....+ .+.+.++. |.. .+ ..++.+..-+.+..||+++.....
T Consensus 1108 ~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w 1187 (1431)
T KOG1240|consen 1108 GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW 1187 (1431)
T ss_pred cCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH
Confidence 99999999999999999987641 10 111112 23344432 221 12 245566666777778776543111
Q ss_pred EEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467 353 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 432 (564)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~ 432 (564)
.+ .+.-..|.|++++.+|-+..+++|+..|.+.+||++-+.
T Consensus 1188 --------------------------------~l-------k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~ 1228 (1431)
T KOG1240|consen 1188 --------------------------------RL-------KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV 1228 (1431)
T ss_pred --------------------------------hh-------hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCc
Confidence 11 112235679999999999999999999999999999887
Q ss_pred eeeecc-cccccEEEEEEccCCCCCCCCCCcEEEEEEe-CCCeEEEEeCCCCeEEEEEeCC-C-------CC--------
Q 008467 433 YVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVELGKLLYSLNGH-R-------EP-------- 494 (564)
Q Consensus 433 ~~~~~~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~h-~-------~~-------- 494 (564)
++.... .+..+|..+...|... .....+.+++ ..+.|.+|++.+|.+.+.+-.. . .|
T Consensus 1229 ~i~sw~~P~~~~i~~v~~~~~~~-----~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~ 1303 (1431)
T KOG1240|consen 1229 PILSWEHPARAPIRHVWLCPTYP-----QESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPD 1303 (1431)
T ss_pred eeecccCcccCCcceEEeeccCC-----CCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCC
Confidence 776553 3456777777776543 1123444455 6889999999998766655322 1 11
Q ss_pred ---EEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 008467 495 ---VYSLAFSPTGEYLASGSLDKSMHIWSLKE 523 (564)
Q Consensus 495 ---i~~~~~spdg~~lasgs~dg~i~iw~~~~ 523 (564)
.....+..-+.++.+|+.|+.|+.||...
T Consensus 1304 ~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1304 SLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred cccceeeecccCCceeeecCCccceeeccCCC
Confidence 11223333456888999999999999764
No 216
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.1e-13 Score=141.73 Aligned_cols=213 Identities=17% Similarity=0.185 Sum_probs=143.4
Q ss_pred CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCC---CcEEEEECCCcceeEEEeecccCeEEEEcCCCceEE
Q 008467 297 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 373 (564)
Q Consensus 297 g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (564)
..|.+||..+.....+..+...+.+.+|+|+|+.|+..+.+ ..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------- 242 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------- 242 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE---------------------
Confidence 36889998877666677788899999999999999887643 358888876654211
Q ss_pred EEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEE-EEeCCC--cEEEEeCCCCeeeeecccccccEEEEEEc
Q 008467 374 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDV--TAKIWNMKQDKYVHDLREHSKEIYTIRWS 450 (564)
Q Consensus 374 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~la-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~i~~i~~~ 450 (564)
+..+.+...+++|+|||+.|+ +.+.+| .|.+||+.++.. ..+..+........|+
T Consensus 243 ---------------------l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~s 300 (433)
T PRK04922 243 ---------------------VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWA 300 (433)
T ss_pred ---------------------eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEEC
Confidence 111222334688999998765 555565 589999987764 3455555555678999
Q ss_pred cCCCCCCCCCCcEEEEEEeCCCe--EEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCe
Q 008467 451 PTGSGTNNPNQQLILASASFDST--VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK---SMHIWSLKEGK 525 (564)
Q Consensus 451 p~~~~~~~~~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg---~i~iw~~~~~~ 525 (564)
|++. .++++...+|. |.++|+..++.. .+..+......++|||||++|+..+.++ .|.+|++.+++
T Consensus 301 pDG~--------~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~ 371 (433)
T PRK04922 301 PDGK--------SIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS 371 (433)
T ss_pred CCCC--------EEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence 9875 23334434554 666677666532 2322333445789999999998765443 69999998887
Q ss_pred EEEEEecCCCEEEEEEccCCCEEEEEEcC-C--cEEEEEe
Q 008467 526 IVKTYTGNGGIFEVCWNKEGDKIAACFAN-H--TVCVLDF 562 (564)
Q Consensus 526 ~~~~~~~~~~i~~~~w~~~g~~la~~~~~-~--~v~v~~~ 562 (564)
.. .+........++|+|||+.|+....+ + .+.+++.
T Consensus 372 ~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 372 VR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred eE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 65 33333344568999999998877653 2 3555554
No 217
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=3e-15 Score=144.04 Aligned_cols=208 Identities=24% Similarity=0.388 Sum_probs=153.8
Q ss_pred eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcC
Q 008467 308 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG 387 (564)
Q Consensus 308 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 387 (564)
+...+.+|++-|.+|.|+.+|.+|++||.|-.+.|||.-..+.+..
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs---------------------------------- 87 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS---------------------------------- 87 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee----------------------------------
Confidence 3456889999999999999999999999999999999864433221
Q ss_pred CCceeeEecCCCcceEEEEECCC--CCEEEEEeCCCcEEEEeCCCC----------eeeeecccccccEEEEEEccCCCC
Q 008467 388 ENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQD----------KYVHDLREHSKEIYTIRWSPTGSG 455 (564)
Q Consensus 388 ~~~~~~~~~~h~~~i~~v~~~~~--~~~las~s~dg~i~iwd~~~~----------~~~~~~~~~~~~i~~i~~~p~~~~ 455 (564)
.-.||..-|-|+.|-|. .++++||..|..|+++|+... ...+.+.-|...|..|+-.|.+.
T Consensus 88 ------I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P- 160 (758)
T KOG1310|consen 88 ------ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP- 160 (758)
T ss_pred ------eecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC-
Confidence 12478889999999884 568999999999999998742 22344455777777787777654
Q ss_pred CCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEE---------EEeCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCC-
Q 008467 456 TNNPNQQLILASASFDSTVKLWDVELGK-LLY---------SLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKE- 523 (564)
Q Consensus 456 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~---------~~~~h~~~i~~~~~spdg-~~lasgs~dg~i~iw~~~~- 523 (564)
..+-+++.||+|+-+|++... +.. .+....-...++..||.. .+||.|+.|-..++||.+.
T Consensus 161 -------htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~ 233 (758)
T KOG1310|consen 161 -------HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRV 233 (758)
T ss_pred -------ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhh
Confidence 368899999999999998521 111 111222346789999976 6789999999999999432
Q ss_pred -------Ce----------EEEEEecC-------------CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 524 -------GK----------IVKTYTGN-------------GGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 524 -------~~----------~~~~~~~~-------------~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
|+ ++.-|... .+++-++|+|.|.-|.+..+...|.++|+.
T Consensus 234 lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn 303 (758)
T KOG1310|consen 234 LKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVN 303 (758)
T ss_pred ccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeec
Confidence 11 12222110 124678999999999999888899999873
No 218
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=9.5e-14 Score=141.80 Aligned_cols=206 Identities=20% Similarity=0.224 Sum_probs=138.0
Q ss_pred CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCC---CcEEEEECCCcceeEEEeecccCeEEEEcCCCceEE
Q 008467 297 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 373 (564)
Q Consensus 297 g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (564)
..|.+||.+|.....+..+...+.+.+|+|+|+.|+..+.+ ..|.+||+.+++...
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------- 234 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------- 234 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE---------------------
Confidence 46777788777666666788899999999999998876643 348888887664221
Q ss_pred EEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEE-EEeCCCcEEEEeC--CCCeeeeecccccccEEEEEEc
Q 008467 374 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNM--KQDKYVHDLREHSKEIYTIRWS 450 (564)
Q Consensus 374 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~la-s~s~dg~i~iwd~--~~~~~~~~~~~~~~~i~~i~~~ 450 (564)
+....+.+.+.+|+|||+.|+ +.+.+|...||.+ .++. ...+..+........|+
T Consensus 235 ---------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS 292 (427)
T PRK02889 235 ---------------------VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFS 292 (427)
T ss_pred ---------------------eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEc
Confidence 111122345789999998876 5677888777764 3333 44555555556678899
Q ss_pred cCCCCCCCCCCcEEEEEEeCCCeEEEEeC--CCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCe
Q 008467 451 PTGSGTNNPNQQLILASASFDSTVKLWDV--ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK---SMHIWSLKEGK 525 (564)
Q Consensus 451 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~--~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg---~i~iw~~~~~~ 525 (564)
|+|. .+++++..+|...||.+ ..++. ..+..+.......+|||||++||..+.++ .|.+|++.+++
T Consensus 293 pDG~--------~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 293 PDGR--------SIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ 363 (427)
T ss_pred CCCC--------EEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC
Confidence 9886 23444444566666654 44432 22222223345678999999999777654 69999998887
Q ss_pred EEEEEecCCCEEEEEEccCCCEEEEEEcCC
Q 008467 526 IVKTYTGNGGIFEVCWNKEGDKIAACFANH 555 (564)
Q Consensus 526 ~~~~~~~~~~i~~~~w~~~g~~la~~~~~~ 555 (564)
.... ........++|+|||+.|+++..++
T Consensus 364 ~~~l-t~~~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 364 VTAL-TDTTRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred eEEc-cCCCCccCceECCCCCEEEEEEecC
Confidence 5433 3333446789999999998886544
No 219
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=4.4e-13 Score=136.74 Aligned_cols=214 Identities=14% Similarity=0.194 Sum_probs=139.5
Q ss_pred CCeEEEEECCCCCEEEEEeC---CCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEe-eCCC--cEEEEECCCcc
Q 008467 276 KDVTTLDWNGEGTLLATGSY---DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDK--TAIVWDVKTEE 349 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~---dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~--~v~iwd~~~~~ 349 (564)
..+.+.+|||||+.|+..+. +..+.+|+..+.....+....+.+..+.|+|+|+.|+.. +.++ .|.+||+.++.
T Consensus 199 ~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~ 278 (429)
T PRK03629 199 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 278 (429)
T ss_pred CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 46889999999999987653 357889997755444443344445678999999988754 4344 46677776553
Q ss_pred eeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCC-CcEEEE--
Q 008467 350 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-VTAKIW-- 426 (564)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~d-g~i~iw-- 426 (564)
..+ +..+...+....|+|||+.|+..+++ +...||
T Consensus 279 ~~~------------------------------------------lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~ 316 (429)
T PRK03629 279 IRQ------------------------------------------VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKV 316 (429)
T ss_pred EEE------------------------------------------ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEE
Confidence 221 11222345678999999988777764 455555
Q ss_pred eCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC--CeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCC
Q 008467 427 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD--STVKLWDVELGKLLYSLNGHREPVYSLAFSPTG 504 (564)
Q Consensus 427 d~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg 504 (564)
|+.++.. ..+..+........|+|+|. .+++++..+ ..|.+||+.+++.. .+... ......+|||||
T Consensus 317 d~~~g~~-~~lt~~~~~~~~~~~SpDG~--------~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG 385 (429)
T PRK03629 317 NINGGAP-QRITWEGSQNQDADVSSDGK--------FMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNG 385 (429)
T ss_pred ECCCCCe-EEeecCCCCccCEEECCCCC--------EEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCC
Confidence 5555543 33333444456788999875 233333333 45888999877643 34322 223567899999
Q ss_pred CEEEEEeCCCc---EEEEeCCCCeEEEEEec-CCCEEEEEEcc
Q 008467 505 EYLASGSLDKS---MHIWSLKEGKIVKTYTG-NGGIFEVCWNK 543 (564)
Q Consensus 505 ~~lasgs~dg~---i~iw~~~~~~~~~~~~~-~~~i~~~~w~~ 543 (564)
++|+.++.++. +.++++ +|.....+.. .+.+.+.+|+|
T Consensus 386 ~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 386 TMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 99999888764 677777 4554555544 45688899997
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=5.8e-13 Score=135.91 Aligned_cols=207 Identities=13% Similarity=0.159 Sum_probs=139.0
Q ss_pred CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeC---CCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEE
Q 008467 297 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC---DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 373 (564)
Q Consensus 297 g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (564)
..|.+||.+|.....+..+...+.+.+|+|+|+.|+..+. +..+.+||+.+++...
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------- 237 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------- 237 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE---------------------
Confidence 3788899887766666677789999999999999886542 3467777776654211
Q ss_pred EEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEE-eCCC--cEEEEeCCCCeeeeecccccccEEEEEEc
Q 008467 374 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC-SDDV--TAKIWNMKQDKYVHDLREHSKEIYTIRWS 450 (564)
Q Consensus 374 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~-s~dg--~i~iwd~~~~~~~~~~~~~~~~i~~i~~~ 450 (564)
+..+.++ +..++|+|||+.|+.. +.+| .|.+||+.++... .+..+...+....|+
T Consensus 238 ------------------l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wS 295 (429)
T PRK03629 238 ------------------VASFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWF 295 (429)
T ss_pred ------------------ccCCCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEEC
Confidence 1112222 3357899999988754 4455 4888999887654 344444567889999
Q ss_pred cCCCCCCCCCCcEEEEEEeCCCe--EEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCe
Q 008467 451 PTGSGTNNPNQQLILASASFDST--VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHIWSLKEGK 525 (564)
Q Consensus 451 p~~~~~~~~~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d---g~i~iw~~~~~~ 525 (564)
|+|. .++++...++. |.++|+..+.. ..+..+...+...+|||||++|+..+.+ ..|.+||+.+++
T Consensus 296 PDG~--------~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~ 366 (429)
T PRK03629 296 PDSQ--------NLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 366 (429)
T ss_pred CCCC--------EEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 9885 23333333444 44446665543 3444344456678999999999876543 358899998886
Q ss_pred EEEEEecCCCEEEEEEccCCCEEEEEEcCCc
Q 008467 526 IVKTYTGNGGIFEVCWNKEGDKIAACFANHT 556 (564)
Q Consensus 526 ~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~ 556 (564)
.. .+.........+|+|||++|++++.++.
T Consensus 367 ~~-~Lt~~~~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 367 VQ-VLTDTFLDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred eE-EeCCCCCCCCceECCCCCEEEEEEcCCC
Confidence 44 3333223456899999999999887764
No 221
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=5.2e-13 Score=137.08 Aligned_cols=215 Identities=13% Similarity=0.136 Sum_probs=144.7
Q ss_pred CCCeEEEEECCCCCEEEEEeC---CCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEE-EeeCCCc--EEEEECCCc
Q 008467 275 SKDVTTLDWNGEGTLLATGSY---DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKT--AIVWDVKTE 348 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~sg~~---dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~--v~iwd~~~~ 348 (564)
...+.+.+|+|||+.|+..+. +..|.+|+..+.....+..+.+.+.+.+|+|+|+.|+ +.+.++. |.+||+.++
T Consensus 201 ~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~ 280 (435)
T PRK05137 201 SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG 280 (435)
T ss_pred CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC
Confidence 456899999999999988764 3689999987665566667778888999999999875 5555554 555566554
Q ss_pred ceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CC--cEEE
Q 008467 349 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV--TAKI 425 (564)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg--~i~i 425 (564)
.. ..+..+.+......|+|||+.|+..++ +| .|.+
T Consensus 281 ~~------------------------------------------~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~ 318 (435)
T PRK05137 281 TT------------------------------------------TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYV 318 (435)
T ss_pred ce------------------------------------------EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEE
Confidence 32 122233344556899999998887764 33 5777
Q ss_pred EeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC---CeEEEEeCCCCeEEEEEeCCCCCEEEEEEcC
Q 008467 426 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD---STVKLWDVELGKLLYSLNGHREPVYSLAFSP 502 (564)
Q Consensus 426 wd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp 502 (564)
||+.++.. ..+..+...+....|+|+|. .|+..+.+ ..|.+||+..+.. ..+. ....+...+|+|
T Consensus 319 ~d~~g~~~-~~lt~~~~~~~~~~~SpdG~---------~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~sp 386 (435)
T PRK05137 319 MNADGSNP-RRISFGGGRYSTPVWSPRGD---------LIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAP 386 (435)
T ss_pred EECCCCCe-EEeecCCCcccCeEECCCCC---------EEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECC
Confidence 78766543 33433445566788999885 34443332 3688889865443 3333 223467889999
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCeEEEEEecCCCEEEEEEccC
Q 008467 503 TGEYLASGSLD------KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE 544 (564)
Q Consensus 503 dg~~lasgs~d------g~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~ 544 (564)
||++|+..+.+ ..|.++++..+.. ..+...+.+...+|+|-
T Consensus 387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPGDASDPAWSPL 433 (435)
T ss_pred CCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCCCccCcccCCC
Confidence 99998765543 2588888876554 34444555778899873
No 222
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.61 E-value=5.5e-15 Score=139.65 Aligned_cols=270 Identities=17% Similarity=0.227 Sum_probs=203.0
Q ss_pred ceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCC
Q 008467 218 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 297 (564)
Q Consensus 218 ~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg 297 (564)
.-..+.++.+|++|+.|+.-|.+..+|+.++... .... -...|..+.|-.+.+++|++- ..
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~-----------~Ei~-------v~Etv~Dv~~LHneq~~AVAQ-K~ 191 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH-----------FEIN-------VMETVRDVTFLHNEQFFAVAQ-KK 191 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceee-----------eeee-------hhhhhhhhhhhcchHHHHhhh-hc
Confidence 4466899999999999999999999998765321 0000 123477888888888888764 57
Q ss_pred eEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC-CceEEEEe
Q 008467 298 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSS 376 (564)
Q Consensus 298 ~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 376 (564)
.+.|||-.|.....+..| ..|..+.|.|..-.|++++..|.++.-|+.+|+.+..+....+.+..+.-.+ +..+-++.
T Consensus 192 y~yvYD~~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh 270 (545)
T KOG1272|consen 192 YVYVYDNNGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH 270 (545)
T ss_pred eEEEecCCCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC
Confidence 899999998877777666 4688999999887888899999999999999999888877766655554433 34556788
Q ss_pred CCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCC
Q 008467 377 TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGT 456 (564)
Q Consensus 377 ~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~ 456 (564)
..|+|.+|.-....|+..+..|.++|++|+++++|.++||.+.|..++|||++....++++.. ..+...+.+|..|
T Consensus 271 snGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--- 346 (545)
T KOG1272|consen 271 SNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--- 346 (545)
T ss_pred CCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc---
Confidence 999999999999899888899999999999999999999999999999999998776666554 2334556666554
Q ss_pred CCCCCcEEEEEEeCCCeEEEEeC-CCC--eEEEEEeCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008467 457 NNPNQQLILASASFDSTVKLWDV-ELG--KLLYSLNGH--REPVYSLAFSPTGEYLASGSLDKSMHIW 519 (564)
Q Consensus 457 ~~~~~~~~l~s~s~dg~i~iwd~-~~~--~~~~~~~~h--~~~i~~~~~spdg~~lasgs~dg~i~iw 519 (564)
+| .+|.-..|.||.= -.+ ..-..+..| ..+|..+.|.|-...|-.|-..|.-.|.
T Consensus 347 -------lL-A~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 347 -------LL-ALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred -------ce-eeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence 34 4556678999952 221 111112223 3589999999988887777666644443
No 223
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=3.1e-13 Score=138.57 Aligned_cols=213 Identities=17% Similarity=0.213 Sum_probs=140.1
Q ss_pred CCeEEEEECCCCCEEEEEeCC---CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEE-EeeCCC--cEEEEECCCcc
Q 008467 276 KDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDK--TAIVWDVKTEE 349 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~d---g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~--~v~iwd~~~~~ 349 (564)
..+.+..|+|||+.|+..+.+ ..|++|+..+.....+..+.+...+.+|+|+|+.|+ +.+.++ .|.+||+.++.
T Consensus 204 ~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~ 283 (433)
T PRK04922 204 EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ 283 (433)
T ss_pred CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC
Confidence 468889999999999988754 469999987655555555566666889999999875 445555 47777776554
Q ss_pred eeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CCc--EEEE
Q 008467 350 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVT--AKIW 426 (564)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg~--i~iw 426 (564)
.. .+..+......++|+|||+.|+.+++ +|. |.++
T Consensus 284 ~~------------------------------------------~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~ 321 (433)
T PRK04922 284 LT------------------------------------------RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRV 321 (433)
T ss_pred eE------------------------------------------ECccCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 21 12223333456789999998887764 455 5556
Q ss_pred eCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEe-CCC--eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCC
Q 008467 427 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPT 503 (564)
Q Consensus 427 d~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s-~dg--~i~iwd~~~~~~~~~~~~h~~~i~~~~~spd 503 (564)
++.++... .+..+........|+|+|. .|+..+ .++ .|.+||+.+++.. .+. +.......+|+||
T Consensus 322 dl~~g~~~-~lt~~g~~~~~~~~SpDG~---------~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spd 389 (433)
T PRK04922 322 AASGGSAE-RLTFQGNYNARASVSPDGK---------KIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPN 389 (433)
T ss_pred ECCCCCeE-EeecCCCCccCEEECCCCC---------EEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCC
Confidence 66655432 2222333445689999885 343333 222 6999999877654 343 2224456799999
Q ss_pred CCEEEEEeCC---CcEEEEeCCCCeEEEEEe-cCCCEEEEEEcc
Q 008467 504 GEYLASGSLD---KSMHIWSLKEGKIVKTYT-GNGGIFEVCWNK 543 (564)
Q Consensus 504 g~~lasgs~d---g~i~iw~~~~~~~~~~~~-~~~~i~~~~w~~ 543 (564)
|++|+..+.+ +.|.++++.. .....+. ..+.+..++|+|
T Consensus 390 G~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 390 GSMVLYATREGGRGVLAAVSTDG-RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCEEEEEEecCCceEEEEEECCC-CceEEcccCCCCCCCCccCC
Confidence 9998876653 4688888854 3444443 345677889987
No 224
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=2.2e-13 Score=132.18 Aligned_cols=271 Identities=16% Similarity=0.274 Sum_probs=190.1
Q ss_pred CCCeEEEEECCCCCE-EEEEeCCCeEEEEECCCceeEeecCCC-CC-EEEEEeCCCCCEEEEeeCCCcEEEEECCCccee
Q 008467 275 SKDVTTLDWNGEGTL-LATGSYDGQARIWSTNGDLKCTLSKHK-GP-IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 351 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~-l~sg~~dg~i~vw~~~~~~~~~~~~h~-~~-V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 351 (564)
...-+.+..+|||++ +++|.+--.|++||...-.+ .|..|. .. |.-.-.+.+-.-++.-..|++|-+..-......
T Consensus 51 p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL-KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~ 129 (703)
T KOG2321|consen 51 PTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL-KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYR 129 (703)
T ss_pred ccccceeEecCCCcEEEEecccCCceEEEEccccee-eeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeee
Confidence 445678899999997 56788899999999865333 233443 22 333333333333444445666655432111100
Q ss_pred EEEeecccCeEEEEcC-CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008467 352 QQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 430 (564)
Q Consensus 352 ~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~ 430 (564)
..+ .....++.+. ....+..++....||-+++..++-+..|....+.++++..++-..+|++|+.+|.|..||.+.
T Consensus 130 ~RI---P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 130 TRI---PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eec---CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 000 0012233332 234455566667789999999988888888889999999999999999999999999999987
Q ss_pred Ceeeeecc------cccc-----cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe-CCCCCEEEE
Q 008467 431 DKYVHDLR------EHSK-----EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GHREPVYSL 498 (564)
Q Consensus 431 ~~~~~~~~------~~~~-----~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~~ 498 (564)
...+..+. .|.+ .|+++.|+.+| +.++.|..+|.|.|||+++.+++..-. +...||..+
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g---------L~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l 277 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG---------LHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKL 277 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecCCc---------eeEEeeccCCcEEEEEcccCCceeecccCCccceeee
Confidence 76554442 2333 38999998765 468999999999999999988776543 234689999
Q ss_pred EEcCCC--CEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEE
Q 008467 499 AFSPTG--EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCV 559 (564)
Q Consensus 499 ~~spdg--~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v 559 (564)
.|-+.+ ..+++.. ...++|||-.+|+..........+.++|+=|++-++.++-.++.+..
T Consensus 278 ~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 278 DWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred cccccCCCceEEecc-hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCccee
Confidence 998763 4455432 35799999999999988888888999999999999998877665543
No 225
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.5e-14 Score=137.65 Aligned_cols=282 Identities=22% Similarity=0.344 Sum_probs=209.6
Q ss_pred cccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-Cc-eeEeecCCCCCEEEEEeCCCC--CEEEEeeCCCcEEEEECC
Q 008467 271 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GD-LKCTLSKHKGPIFSLKWNKKG--DYLLTGSCDKTAIVWDVK 346 (564)
Q Consensus 271 ~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~-~~~~~~~h~~~V~~l~~~~~~--~~l~s~s~D~~v~iwd~~ 346 (564)
...|.+.|..+.|+..|..|++|+.|..|.+|+.. +. ......+|...|+.-+|-|.. ..+++++.||.|++=.+.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~ 217 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL 217 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeec
Confidence 34567889999999999999999999999999954 33 333457899999999998854 568999999999987653
Q ss_pred -Cccee--EEEeecccCeEEEE--cCCCceEEEEeCCCeEEEEEcCCCceeeEec---CCCc---ceEEEEECCCCC-EE
Q 008467 347 -TEEWK--QQFEFHSGPTLDVD--WRNNVSFATSSTDNMIYVCKIGENRPIKTFA---GHQG---EVNCVKWDPTGS-LL 414 (564)
Q Consensus 347 -~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~---~h~~---~i~~v~~~~~~~-~l 414 (564)
++.+. ..+..|.+++..+. ......|.+++.|+.+.-.|+....|...+. .+.. ....++.+|... .+
T Consensus 218 ~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~f 297 (559)
T KOG1334|consen 218 ETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEF 297 (559)
T ss_pred cccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcccc
Confidence 33333 23455677765544 4455789999999999999998877655443 2333 457888898765 78
Q ss_pred EEEeCCCcEEEEeCCCCe------eeeecccc------cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-
Q 008467 415 ASCSDDVTAKIWNMKQDK------YVHDLREH------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL- 481 (564)
Q Consensus 415 as~s~dg~i~iwd~~~~~------~~~~~~~~------~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~- 481 (564)
++|+.|-.+++||.+.-. .+..|..| .-.|++++|+.++.. |.++..|-.|+++.-.-
T Consensus 298 aVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE---------lLaSYnDe~IYLF~~~~~ 368 (559)
T KOG1334|consen 298 AVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE---------LLASYNDEDIYLFNKSMG 368 (559)
T ss_pred ccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc---------eeeeecccceEEeccccc
Confidence 999999999999975321 12233222 245899999876642 34455677899985332
Q ss_pred -C----------eEEE-EEeCCCCC--EEEEE-EcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccCC
Q 008467 482 -G----------KLLY-SLNGHREP--VYSLA-FSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEG 545 (564)
Q Consensus 482 -~----------~~~~-~~~~h~~~--i~~~~-~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g 545 (564)
| ..+. .++||... |..+- |-|...|+++||.=|.|.||+-++++++..+.+. .-|++|.=+|--
T Consensus 369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~ 448 (559)
T KOG1334|consen 369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHL 448 (559)
T ss_pred cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCC
Confidence 2 1222 36788643 55554 6789999999999999999999999988877664 357889889989
Q ss_pred CEEEEEEcCCcEEEEE
Q 008467 546 DKIAACFANHTVCVLD 561 (564)
Q Consensus 546 ~~la~~~~~~~v~v~~ 561 (564)
-.||+++.+..|+||-
T Consensus 449 PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 449 PVLASSGIDHDVKIWT 464 (559)
T ss_pred chhhccCCccceeeec
Confidence 9999999999999994
No 226
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=3.5e-13 Score=137.63 Aligned_cols=215 Identities=20% Similarity=0.286 Sum_probs=139.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCC---CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEEC--CCc
Q 008467 275 SKDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDV--KTE 348 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~sg~~d---g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~--~~~ 348 (564)
...+.+.+|||||+.|+..+.+ ..|.+|+..+.....+....+.+.+..|+|+|+.|+ +.+.++...||.+ .++
T Consensus 195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~ 274 (427)
T PRK02889 195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS 274 (427)
T ss_pred CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 3568889999999999887753 359999987655445554556677899999999876 5667777666643 222
Q ss_pred ceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CCcEEEEe
Q 008467 349 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWN 427 (564)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg~i~iwd 427 (564)
. ...+..+.+......|+|||+.|+..++ +|...||.
T Consensus 275 ~------------------------------------------~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~ 312 (427)
T PRK02889 275 G------------------------------------------LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYR 312 (427)
T ss_pred C------------------------------------------cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEE
Confidence 1 1122233344456789999998876665 56777776
Q ss_pred C--CCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC---eEEEEeCCCCeEEEEEeCCCCCEEEEEEcC
Q 008467 428 M--KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS---TVKLWDVELGKLLYSLNGHREPVYSLAFSP 502 (564)
Q Consensus 428 ~--~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp 502 (564)
+ .++.. ..+...........|+|+|. .|+..+.++ .|.+||+.+++.. .+... ......+|+|
T Consensus 313 ~~~~~g~~-~~lt~~g~~~~~~~~SpDG~---------~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~sp 380 (427)
T PRK02889 313 MPASGGAA-QRVTFTGSYNTSPRISPDGK---------LLAYISRVGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAP 380 (427)
T ss_pred EECCCCce-EEEecCCCCcCceEECCCCC---------EEEEEEccCCcEEEEEEECCCCCeE-EccCC-CCccCceECC
Confidence 5 33332 22222223345678999885 455444443 6999999887654 33322 2346789999
Q ss_pred CCCEEEEEeCCC---cEEEEeCCCCeEEEEEec-CCCEEEEEEccC
Q 008467 503 TGEYLASGSLDK---SMHIWSLKEGKIVKTYTG-NGGIFEVCWNKE 544 (564)
Q Consensus 503 dg~~lasgs~dg---~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~ 544 (564)
||++|+.++.++ .+.+.++ +|........ .+.+...+|+|-
T Consensus 381 dg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 381 NGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 999998776543 3555566 4555555543 355778899873
No 227
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.59 E-value=3e-15 Score=150.55 Aligned_cols=234 Identities=21% Similarity=0.387 Sum_probs=176.8
Q ss_pred EeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC-CCceEEEEeCCCeEEEEEcCC
Q 008467 310 CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGE 388 (564)
Q Consensus 310 ~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~ 388 (564)
..+.+|.++|+|+.|...|.++++|+.|..++||...++.+......|.+.+.++.-. ++..+++++.|..|++|.+..
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence 3567899999999999999999999999999999999999999999999999888765 455668889999999999999
Q ss_pred CceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeee---ccc-ccccEEEEEEccCCCCCCCCCCcEE
Q 008467 389 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD---LRE-HSKEIYTIRWSPTGSGTNNPNQQLI 464 (564)
Q Consensus 389 ~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~---~~~-~~~~i~~i~~~p~~~~~~~~~~~~~ 464 (564)
+.|+..+.||++.|++++|+|- ++.+.||++++||.+-.-.+.. +.. ....+.++.|...+. -
T Consensus 264 ~~pvsvLrghtgavtaiafsP~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~---------~ 330 (1113)
T KOG0644|consen 264 GAPVSVLRGHTGAVTAIAFSPR----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD---------R 330 (1113)
T ss_pred CchHHHHhccccceeeeccCcc----ccCCCCCceEeccccccccccCCCCCCcccccceeeeecccccc---------c
Confidence 9999999999999999999995 4889999999999871111100 000 112334444444332 4
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEecCC-CEEEEEEc
Q 008467 465 LASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 542 (564)
Q Consensus 465 l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg-~~lasgs~dg~i~iw~~~~~~~~~~~~~~~-~i~~~~w~ 542 (564)
++|++.|+.-+.|...... .+...+.-+.++.|- .+.+++-.+-.+++|++-+|.+++...++. .++-|.++
T Consensus 331 f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~H 404 (1113)
T KOG0644|consen 331 FLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVH 404 (1113)
T ss_pred cccccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeec
Confidence 6789999988888654211 122122222222232 466677778899999999998888776654 57889999
Q ss_pred cCCCEEE-EEEcCCcEEEEEe
Q 008467 543 KEGDKIA-ACFANHTVCVLDF 562 (564)
Q Consensus 543 ~~g~~la-~~~~~~~v~v~~~ 562 (564)
|=..+++ .+..||...|||+
T Consensus 405 pfn~ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 405 PFNPRIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred CCCcHhhhhccCCCceEeeec
Confidence 9887666 4467899999986
No 228
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.59 E-value=4.7e-13 Score=120.41 Aligned_cols=117 Identities=29% Similarity=0.652 Sum_probs=91.0
Q ss_pred CCcceEEEEECCCCCEEEEE--eCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeC---CC
Q 008467 398 HQGEVNCVKWDPTGSLLASC--SDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF---DS 472 (564)
Q Consensus 398 h~~~i~~v~~~~~~~~las~--s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~---dg 472 (564)
..++|.+++|+|+|+.||.+ ..+..|.+||.+ .+.+..+. ...+.++.|+|.|. +|+.|+. .|
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~---------~l~~~g~~n~~G 125 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGR---------FLVLAGFGNLNG 125 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCC---------EEEEEEccCCCc
Confidence 34579999999999987654 457799999997 55555553 45678999999986 5666653 47
Q ss_pred eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEeCCCCeEEEE
Q 008467 473 TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL------DKSMHIWSLKEGKIVKT 529 (564)
Q Consensus 473 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~------dg~i~iw~~~~~~~~~~ 529 (564)
.|.+||+++.+.+.... |. .++.++|||||++|++++. |+.++||+.. |+++..
T Consensus 126 ~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 126 DLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 79999999888887765 33 4789999999999998864 7789999985 665554
No 229
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=4.4e-14 Score=136.12 Aligned_cols=221 Identities=24% Similarity=0.379 Sum_probs=154.0
Q ss_pred cccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-ceeE-eecCCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECC
Q 008467 271 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKC-TLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVK 346 (564)
Q Consensus 271 ~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~-~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~ 346 (564)
..+|.+.|.|++|+.+|.+|++|+.|-.+.|||.-. ++.. .-.+|...|++++|-|. ...+++|+.|..|+++|+.
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~ 125 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD 125 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence 346788999999999999999999999999999653 3333 45789999999999984 4578999999999999986
Q ss_pred CcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCC-CEEEEEeCCCcEEE
Q 008467 347 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKI 425 (564)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~las~s~dg~i~i 425 (564)
..+-. +.| -+...+...+..|...|..++--|++ ..+.++++||+|+-
T Consensus 126 ~~~~~------------------------~~d-------~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQ 174 (758)
T KOG1310|consen 126 SSKEG------------------------GMD-------HGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQ 174 (758)
T ss_pred ccccc------------------------ccc-------cCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceee
Confidence 42100 000 01123344566788889999999998 67899999999999
Q ss_pred EeCCCCee-eee------c---ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--------Ce----
Q 008467 426 WNMKQDKY-VHD------L---REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--------GK---- 483 (564)
Q Consensus 426 wd~~~~~~-~~~------~---~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--------~~---- 483 (564)
+|++.... ... + ...--...++..+|.. ..+|+.|+.|-..++||.+. +.
T Consensus 175 yDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~r--------p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~ 246 (758)
T KOG1310|consen 175 YDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSR--------PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTC 246 (758)
T ss_pred ecccCCccCCccccccHHHHHhchhhheeeeeeecCCC--------CceEEecCCCchhhhhhhhhhccCCCCCccccCC
Confidence 99975321 111 1 1111234666776654 35899999999999999431 11
Q ss_pred ------EEEEE-eCCC-----------CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 008467 484 ------LLYSL-NGHR-----------EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 530 (564)
Q Consensus 484 ------~~~~~-~~h~-----------~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~ 530 (564)
++..+ .+|. ..++-+.|+|+|.-|...=..-.|++||+..++....|
T Consensus 247 pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 247 PPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred CCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 22221 1222 12566899999976554333346999999887755444
No 230
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.57 E-value=1.9e-13 Score=124.70 Aligned_cols=269 Identities=21% Similarity=0.428 Sum_probs=176.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc------eeEeecCCC------------CCEEEEEeCCCCC--EEEEe
Q 008467 275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD------LKCTLSKHK------------GPIFSLKWNKKGD--YLLTG 334 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~------~~~~~~~h~------------~~V~~l~~~~~~~--~l~s~ 334 (564)
..-|.++.|...|.+|++|..+|.|.++..+.. ....++.|. ..|..++|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 456889999999999999999999999975422 233455554 3578899998764 57788
Q ss_pred eCCCcEEEEECCCcceeE-EEeec-ccCeEEEEcCCCceE-EEEeCCCeEEEEEcCCCceeeEec-CCCcceEEEEECCC
Q 008467 335 SCDKTAIVWDVKTEEWKQ-QFEFH-SGPTLDVDWRNNVSF-ATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPT 410 (564)
Q Consensus 335 s~D~~v~iwd~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~-~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~v~~~~~ 410 (564)
..|++|++|-+....... .+... ..+... .....+ +....+-.+ .-.|.+.+. +|.-.|+++.++.|
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~---~~~lr~p~~~~~~~~v------ea~prRv~aNaHtyhiNSIS~NsD 175 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGT---ITSLRLPVEGRHDLEV------EASPRRVYANAHTYHINSISVNSD 175 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCc---cceeeceeecccccee------eeeeeeeccccceeEeeeeeecCc
Confidence 899999999876543221 00000 000000 000000 000111111 012344443 68889999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCe---eeeecccc-----cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC
Q 008467 411 GSLLASCSDDVTAKIWNMKQDK---YVHDLREH-----SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG 482 (564)
Q Consensus 411 ~~~las~s~dg~i~iwd~~~~~---~~~~~~~~-----~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 482 (564)
+..++|+ +|=.|.+|++.-.. .+..++.+ ..-|++..|+|... .+++-.|..|+|++-|++..
T Consensus 176 ~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c--------n~f~YSSSKGtIrLcDmR~~ 246 (433)
T KOG1354|consen 176 KETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC--------NVFVYSSSKGTIRLCDMRQS 246 (433)
T ss_pred cceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc--------cEEEEecCCCcEEEeechhh
Confidence 9988765 67789999975321 12333333 23466777777543 47788888999999999843
Q ss_pred eE------EEEEe----------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEEEEecC------------
Q 008467 483 KL------LYSLN----------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSL-KEGKIVKTYTGN------------ 533 (564)
Q Consensus 483 ~~------~~~~~----------~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~-~~~~~~~~~~~~------------ 533 (564)
.+ ++... .--..|..+.||++|+||++-+. -+|++||+ ...+.+.+++.+
T Consensus 247 aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYE 325 (433)
T KOG1354|consen 247 ALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYE 325 (433)
T ss_pred hhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhh
Confidence 22 11111 11235788999999999987554 47999999 456677777532
Q ss_pred -CCE---EEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 534 -GGI---FEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 534 -~~i---~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
.+| +.++|+-++.++++|+-+..++||+.
T Consensus 326 nD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 326 NDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred ccchhheeEEEEcCCcceEecccccceEEEecC
Confidence 344 47999999999999999888999884
No 231
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=1.2e-12 Score=121.62 Aligned_cols=272 Identities=17% Similarity=0.258 Sum_probs=182.7
Q ss_pred cceEEEEECCCC--CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 008467 217 SEVCACAWSPAG--SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 294 (564)
Q Consensus 217 ~~V~~~~~sp~~--~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~ 294 (564)
..|..++|.-++ ..|...+.|..+.+..+......... ..++.. ....+.|..++.. | ..|++|-
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~-------~~~~~~----~l~~~~I~gl~~~-d-g~Litc~ 122 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSL-------DDAKTV----SLGTKSIKGLKLA-D-GTLITCV 122 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCcccccc-------cccccc----ccccccccchhhc-C-CEEEEEe
Confidence 346667777654 46666667777777766554322110 001111 1123445554433 2 3577888
Q ss_pred CCCeEEEEECC-----CceeEeecCCCCCEEEEEeCCCCCEEE-EeeCC--CcEEEEECCCcceeEEEeecccCeEEEEc
Q 008467 295 YDGQARIWSTN-----GDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCD--KTAIVWDVKTEEWKQQFEFHSGPTLDVDW 366 (564)
Q Consensus 295 ~dg~i~vw~~~-----~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 366 (564)
.+|.+.+|... ......+..+ .++..+.-++...+|+ +|+.. ..+.|||+... .+.|.....+.
T Consensus 123 ~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvpn----- 194 (412)
T KOG3881|consen 123 SSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS--KQIWSAKNVPN----- 194 (412)
T ss_pred cCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc--eeeeeccCCCC-----
Confidence 99999999865 2333334333 4566777777666655 58888 78999999876 44443322111
Q ss_pred CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC--CCEEEEEeCCCcEEEEeCCCC-eeeeeccccccc
Q 008467 367 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQD-KYVHDLREHSKE 443 (564)
Q Consensus 367 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~--~~~las~s~dg~i~iwd~~~~-~~~~~~~~~~~~ 443 (564)
+. -+-.|-+| ++.+.|-+. ...||+|+.-+.+|+||.+.+ +++..|..-..+
T Consensus 195 --D~------L~LrVPvW-----------------~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~ 249 (412)
T KOG3881|consen 195 --DR------LGLRVPVW-----------------ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENP 249 (412)
T ss_pred --cc------ccceeeee-----------------eccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCc
Confidence 00 01112223 345666665 678999999999999999865 456777766778
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEE-EeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 008467 444 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 522 (564)
Q Consensus 444 i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~ 522 (564)
+.++...|.+. .+.+|..-|.+..||++.++.+.. +.+..+.|.+|..+|.+++||++|.|..|+|+|++
T Consensus 250 is~~~l~p~gn---------~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 250 ISSTGLTPSGN---------FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIK 320 (412)
T ss_pred ceeeeecCCCc---------EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecc
Confidence 88888888775 688899999999999999998876 88889999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCEEEEEEcc
Q 008467 523 EGKIVKTYTGNGGIFEVCWNK 543 (564)
Q Consensus 523 ~~~~~~~~~~~~~i~~~~w~~ 543 (564)
+.+++....-...++.+-+.+
T Consensus 321 trkll~kvYvKs~lt~il~~~ 341 (412)
T KOG3881|consen 321 TRKLLHKVYVKSRLTFILLRD 341 (412)
T ss_pred cchhhhhhhhhccccEEEecC
Confidence 977664433334445554433
No 232
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.55 E-value=3.6e-13 Score=122.20 Aligned_cols=302 Identities=18% Similarity=0.315 Sum_probs=195.3
Q ss_pred EEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEE-eCCCeE
Q 008467 221 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG-SYDGQA 299 (564)
Q Consensus 221 ~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg-~~dg~i 299 (564)
-|+|||+|+++|+.+.- .+.|=|..+-+. -+.-.. -..|.-+.|..|..+++++ +.++.|
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~--------------~qlf~c----ldki~yieW~ads~~ilC~~yk~~~v 73 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL--------------HQLFLC----LDKIVYIEWKADSCHILCVAYKDPKV 73 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhH--------------HHHHHH----HHHhhheeeeccceeeeeeeeccceE
Confidence 47899999999998754 555655443211 000000 1346778899988877765 567899
Q ss_pred EEEECC-CceeEeecCCCCCEEEEEeCCCCCE-EEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeC
Q 008467 300 RIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSST 377 (564)
Q Consensus 300 ~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (564)
.+|+.. .+..+.+..-..++.+++|+|+|+. |.+...|-.|.+|.+.+.+.... ......+..+.+..+..|++-..
T Consensus 74 qvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~s 152 (447)
T KOG4497|consen 74 QVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILS 152 (447)
T ss_pred EEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeee
Confidence 999965 4566778888889999999999966 55677889999999987654321 11122334556666666644221
Q ss_pred CC----eEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCC
Q 008467 378 DN----MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 453 (564)
Q Consensus 378 d~----~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~ 453 (564)
.. .+.+.....-..++.|.-.+-..+.+.|+|||..|| +||.--...+.. -...-.+..+.|+|.+
T Consensus 153 RrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la---------Vwd~~Leykv~a-Ye~~lG~k~v~wsP~~ 222 (447)
T KOG4497|consen 153 RRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA---------VWDNVLEYKVYA-YERGLGLKFVEWSPCN 222 (447)
T ss_pred cccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEE---------Eecchhhheeee-eeeccceeEEEecccc
Confidence 11 000000001112334444455677899999999876 444211111100 1122457889999977
Q ss_pred CCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE------------------------------------------------
Q 008467 454 SGTNNPNQQLILASASFDSTVKLWDVELGKLL------------------------------------------------ 485 (564)
Q Consensus 454 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~------------------------------------------------ 485 (564)
. +|+.|+.|+.+||-+--+-+..
T Consensus 223 q---------flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se 293 (447)
T KOG4497|consen 223 Q---------FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESE 293 (447)
T ss_pred c---------eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccch
Confidence 5 7999999999988653211100
Q ss_pred ------------EEEeC------CCCCEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCeEEEEEecCCCEEEEEEccCC
Q 008467 486 ------------YSLNG------HREPVYSLAFSPTGEYLASGSL--DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEG 545 (564)
Q Consensus 486 ------------~~~~~------h~~~i~~~~~spdg~~lasgs~--dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g 545 (564)
..++. -.-.+.-++||+|..|+||-.. -+.+-+||++.-++-..+.....|....|+|.-
T Consensus 294 ~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~ 373 (447)
T KOG4497|consen 294 TIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGR 373 (447)
T ss_pred hhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCC
Confidence 00000 0123566899999999998654 468999999988776667677889999999999
Q ss_pred CEEEEEEcCCcEEEEE
Q 008467 546 DKIAACFANHTVCVLD 561 (564)
Q Consensus 546 ~~la~~~~~~~v~v~~ 561 (564)
..|+.|.+...+.+|-
T Consensus 374 prL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 374 PRLVVCTGKSRLYFWA 389 (447)
T ss_pred ceEEEEcCCceEEEEc
Confidence 9999998877777663
No 233
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=2e-12 Score=128.37 Aligned_cols=296 Identities=17% Similarity=0.284 Sum_probs=202.5
Q ss_pred ceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCC--CCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 008467 218 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQN--GPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 295 (564)
Q Consensus 218 ~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~ 295 (564)
...|++|+....++|.||.||.+++-.+.+......... .+.+... .....+|...|.-+.|+.+.+.|.|...
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsm----NQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSM----NQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccch----hhhhccCcceEEEEEeccccccccccCC
Confidence 457999999999999999999999999877554332211 1111111 1223456788999999999999999999
Q ss_pred CCeEEEEECC-Ccee--EeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceE
Q 008467 296 DGQARIWSTN-GDLK--CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF 372 (564)
Q Consensus 296 dg~i~vw~~~-~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (564)
+|.|.||-.- |... ..-...++-|.+++|+.+|..++....||.|.+=.+....
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR----------------------- 148 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR----------------------- 148 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-----------------------
Confidence 9999999753 3221 2234566789999999999999999999988775443221
Q ss_pred EEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-------e-e---eeccccc
Q 008467 373 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK-------Y-V---HDLREHS 441 (564)
Q Consensus 373 ~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~-------~-~---~~~~~~~ 441 (564)
+|. + .+.| .....+.|++|.+.+..+-..|.+.++|....- + + ..+....
T Consensus 149 ----------Iwg----K---eLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~ 209 (1189)
T KOG2041|consen 149 ----------IWG----K---ELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFP 209 (1189)
T ss_pred ----------ecc----h---hcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCC
Confidence 121 0 0111 012257799998887778888999999865321 1 1 1122233
Q ss_pred ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC--------
Q 008467 442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD-------- 513 (564)
Q Consensus 442 ~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d-------- 513 (564)
..|..+.|.........|+. ..|+.+-.+|.+.|..-.+......+. ..-.|..+.|+++|.+||.+|.|
T Consensus 210 ~kia~i~w~~g~~~~v~pdr-P~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d 287 (1189)
T KOG2041|consen 210 TKIAEIEWNTGPYQPVPPDR-PRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTD 287 (1189)
T ss_pred ccccceeeccCccccCCCCC-CEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccc
Confidence 34677788654333333444 468889999999887655433222222 12457889999999999998865
Q ss_pred -CcEEEEeCCCCeEEEEEecCC-CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 514 -KSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 514 -g~i~iw~~~~~~~~~~~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
+.|++|. .-|+++.++..++ .|++++|-..|-++|.+ .|+.+.+-++|
T Consensus 288 ~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIR 337 (1189)
T KOG2041|consen 288 SNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIR 337 (1189)
T ss_pred cceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEeec
Confidence 3566665 3578888887654 69999999999999988 56678777776
No 234
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.54 E-value=3.8e-13 Score=129.59 Aligned_cols=241 Identities=20% Similarity=0.276 Sum_probs=158.4
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECCCc--e----eEeecCCCCCEEEEEe-----CCCCCEEEEeeCCCcEEEEE
Q 008467 276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--L----KCTLSKHKGPIFSLKW-----NKKGDYLLTGSCDKTAIVWD 344 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~--~----~~~~~~h~~~V~~l~~-----~~~~~~l~s~s~D~~v~iwd 344 (564)
..++...++..|.+|+-.- ...+.+|+..|. . ...+-.-++| ++-.| .|.+--++.|-.-|.|.+.|
T Consensus 124 g~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P-~cHdfn~~~a~~~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 124 GIVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSP-TCHDFNSFTATPKGLDLLIGFTTGQVQLID 201 (636)
T ss_pred cceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCC-ceecccccccCCCCcceEEeeccCceEEec
Confidence 3456666677777766533 346788876542 1 1111112222 22233 35666788888888999988
Q ss_pred CCCcceeEEEe----ecccCeEEEEcC--CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe
Q 008467 345 VKTEEWKQQFE----FHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 418 (564)
Q Consensus 345 ~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s 418 (564)
....++.+.|. .....+.++.|. ++..|+.+..++.+++++...... -+ -.+-...+++..++..
T Consensus 202 p~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~------~t--~p~~~~~k~~~~f~i~- 272 (636)
T KOG2394|consen 202 PINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG------AT--APSYQALKDGDQFAIL- 272 (636)
T ss_pred chhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc------CC--CCcccccCCCCeeEEe-
Confidence 76544333221 223567888896 456788888999999887621100 00 0111122344444322
Q ss_pred CCCcEEEEeCC-CCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEE
Q 008467 419 DDVTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS 497 (564)
Q Consensus 419 ~dg~i~iwd~~-~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~ 497 (564)
.|..+ +..++..+.--.+.|..++|+|+|. +||+.|.||.+||||..+.+++..++..-+...|
T Consensus 273 ------t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~---------~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLC 337 (636)
T KOG2394|consen 273 ------TSKSKKTRNPVARWHIGEGSINEFAFSPDGK---------YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLC 337 (636)
T ss_pred ------eeeccccCCccceeEeccccccceeEcCCCc---------eEEEEecCceEEEeeccHHHHHHHHHhhccceEE
Confidence 22211 1234433333445788999999886 8999999999999999988877777766778999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC-CEEEEEEc
Q 008467 498 LAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 542 (564)
Q Consensus 498 ~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~-~i~~~~w~ 542 (564)
++|||||+|||+|++|..|.||.+..++++..-.++. .|..|+|+
T Consensus 338 vcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 338 VCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 9999999999999999999999999999988766653 46777777
No 235
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.54 E-value=7.1e-13 Score=121.11 Aligned_cols=323 Identities=19% Similarity=0.286 Sum_probs=214.7
Q ss_pred eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467 210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 289 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 289 (564)
..++||.+.|++...-|...-+.+.+.|.++|||--.+..... | .+++ ...++++++.++++...
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~w-----p----sI~~------~mP~~~~~~~y~~e~~~ 82 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYW-----P----SIYH------YMPSPCSAMEYVSESRR 82 (404)
T ss_pred hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccC-----c----hhhh------hCCCCceEeeeeccceE
Confidence 4568999999999888988889999999999999532211100 0 1111 12467999999999999
Q ss_pred EEEEeCCCeEEEEECCCc-----eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeeccc---Ce
Q 008467 290 LATGSYDGQARIWSTNGD-----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG---PT 361 (564)
Q Consensus 290 l~sg~~dg~i~vw~~~~~-----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~---~~ 361 (564)
|++|-.+|++.=+..... .......|.+.|+.+-|+-...++++.+.|+.+.-.-.+.+..+..+.+... ..
T Consensus 83 L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~ 162 (404)
T KOG1409|consen 83 LYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQ 162 (404)
T ss_pred EEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCc
Confidence 999999999988865322 2234467999999999999999999999998765444455444433332221 11
Q ss_pred EEEEcCCCceEEEEeCCCeEEEEEcC--CCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee-eeecc
Q 008467 362 LDVDWRNNVSFATSSTDNMIYVCKIG--ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHDLR 438 (564)
Q Consensus 362 ~~~~~~~~~~~~~~~~d~~i~~~~~~--~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~-~~~~~ 438 (564)
.++. ....+...+.|....+. .-.++.++.+|.+.+.+++|.+...+|.+|..|..+.+||+-..+- ...+.
T Consensus 163 ~d~~-----~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~ 237 (404)
T KOG1409|consen 163 FDAL-----YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQ 237 (404)
T ss_pred eeeE-----EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeec
Confidence 1211 11223334455544443 3457889999999999999999999999999999999999865443 46778
Q ss_pred cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE---EE--------------------------e
Q 008467 439 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY---SL--------------------------N 489 (564)
Q Consensus 439 ~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~--------------------------~ 489 (564)
+|...+..+...+... .|.+++.||.|-+|+....+... .. .
T Consensus 238 gh~~kV~~l~~~~~t~---------~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr 308 (404)
T KOG1409|consen 238 GHNDKVQALSYAQHTR---------QLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLR 308 (404)
T ss_pred cchhhhhhhhhhhhhe---------eeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhh
Confidence 8888888887766543 68899999999999986433210 00 0
Q ss_pred CC-----CCCEEEEEEcCCCCEEEEEeCCCcEE--------EEeCCCCeEEEEE-ecCCCEEEEEEccCCCEEEEEEcCC
Q 008467 490 GH-----REPVYSLAFSPTGEYLASGSLDKSMH--------IWSLKEGKIVKTY-TGNGGIFEVCWNKEGDKIAACFANH 555 (564)
Q Consensus 490 ~h-----~~~i~~~~~spdg~~lasgs~dg~i~--------iw~~~~~~~~~~~-~~~~~i~~~~w~~~g~~la~~~~~~ 555 (564)
-| ...|...+-| ......+-+..-.++ |+|... ..+.++ +.+.+|+.+....+-..|++++.|.
T Consensus 309 ~h~crkcg~avc~~c~s-~~~~~p~mg~e~~vR~~~~c~~~i~~~~~-t~LA~phei~tgItamhlqetlglLvTsG~~R 386 (404)
T KOG1409|consen 309 QHHCRKCGKAVCGKCSS-NRSSYPTMGFEFSVRVCDSCYPTIKDEER-TPLAIPHEIKTGITAMHLQETLGLLVTSGTDR 386 (404)
T ss_pred hhhhhhhhhhcCccccc-CccccccccceeEEEEecccchhhhcCCC-CccccccccccceeEEEhhhhccceeecCCce
Confidence 01 0111111111 111112222222233 333332 112222 3456899999998888999999999
Q ss_pred cEEEEEee
Q 008467 556 TVCVLDFR 563 (564)
Q Consensus 556 ~v~v~~~~ 563 (564)
-+.|||+|
T Consensus 387 vi~iwd~~ 394 (404)
T KOG1409|consen 387 VIKIWDVR 394 (404)
T ss_pred EEEEEech
Confidence 99999987
No 236
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.51 E-value=9.7e-12 Score=127.65 Aligned_cols=206 Identities=20% Similarity=0.248 Sum_probs=139.8
Q ss_pred CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCC---CcEEEEECCCcceeEEEeecccCeEEEEcCCCceEE
Q 008467 297 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 373 (564)
Q Consensus 297 g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (564)
..|.+++.++.....+..+...+.+.+|+|+|++|+.++.+ ..|.+||+.++....
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------- 228 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------- 228 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---------------------
Confidence 36778887766566666777789999999999999877654 368888877653211
Q ss_pred EEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEE-EEeCCC--cEEEEeCCCCeeeeecccccccEEEEEEc
Q 008467 374 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDV--TAKIWNMKQDKYVHDLREHSKEIYTIRWS 450 (564)
Q Consensus 374 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~la-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~i~~i~~~ 450 (564)
+..+.+.+.+++|+|||+.|+ +.+.++ .|.+|++.++.. ..+..+........|+
T Consensus 229 ---------------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s 286 (417)
T TIGR02800 229 ---------------------VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWS 286 (417)
T ss_pred ---------------------eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEEC
Confidence 111233445688999998765 444444 588889887654 3344444444567888
Q ss_pred cCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCe
Q 008467 451 PTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK---SMHIWSLKEGK 525 (564)
Q Consensus 451 p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg---~i~iw~~~~~~ 525 (564)
|++. .++++...++ .|.++|+..++. ..+..+...+..++|+|||++|+.++.++ .|.+|++.++.
T Consensus 287 ~dg~--------~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 287 PDGK--------SIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred CCCC--------EEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 8764 2334443333 588888876654 34444555677889999999999888776 89999998765
Q ss_pred EEEEEecCCCEEEEEEccCCCEEEEEEcCC
Q 008467 526 IVKTYTGNGGIFEVCWNKEGDKIAACFANH 555 (564)
Q Consensus 526 ~~~~~~~~~~i~~~~w~~~g~~la~~~~~~ 555 (564)
.. .+.........+|+|+|++|++++.++
T Consensus 358 ~~-~l~~~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 358 ER-VLTDTGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred eE-EccCCCCCCCceECCCCCEEEEEEeCC
Confidence 43 233233345678999999998877654
No 237
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.51 E-value=3.1e-11 Score=116.04 Aligned_cols=312 Identities=17% Similarity=0.261 Sum_probs=203.4
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467 217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 296 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 296 (564)
-++..++|||.|++|++...- -|.+|.-.... .+.. .....|..+.|||.+++|.+=+..
T Consensus 33 ~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~-------------~l~~------~~~~~V~~~~fSP~~kYL~tw~~~ 92 (561)
T COG5354 33 WPVAYVSESPLGTYLFSEHAA-GVECWGGPSKA-------------KLVR------FRHPDVKYLDFSPNEKYLVTWSRE 92 (561)
T ss_pred cchhheeecCcchheehhhcc-ceEEccccchh-------------heee------eecCCceecccCcccceeeeeccC
Confidence 356788999999999986544 47788643321 0111 113569999999999999987664
Q ss_pred C---------------eEEEEECC-CceeEeecCCCCC--EE-EEEeCCCCCEEEEeeCCCcEEEEECCCcceeE-EEe-
Q 008467 297 G---------------QARIWSTN-GDLKCTLSKHKGP--IF-SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ-QFE- 355 (564)
Q Consensus 297 g---------------~i~vw~~~-~~~~~~~~~h~~~--V~-~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~-~~~- 355 (564)
+ .+.+||.. |.++..+..-..+ .+ -++|+-+.++++-. ....+.|+++ +..... .+.
T Consensus 93 pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~ 170 (561)
T COG5354 93 PIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKN 170 (561)
T ss_pred CccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhh
Confidence 4 48999965 5566666665555 55 67899888877644 3357899987 433221 111
Q ss_pred ecccCeEEEEcCCC---ceEEE-----EeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC--------
Q 008467 356 FHSGPTLDVDWRNN---VSFAT-----SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-------- 419 (564)
Q Consensus 356 ~~~~~~~~~~~~~~---~~~~~-----~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-------- 419 (564)
.....+.++.|.+. ..++. .+...++.+|.+..+.++.+-.-..-.-..+.|++.|++|..--.
T Consensus 171 lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKs 250 (561)
T COG5354 171 LRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKS 250 (561)
T ss_pred ccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccc
Confidence 11123455555433 22222 245677888888866665432222223346889998887543211
Q ss_pred ---CCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEE
Q 008467 420 ---DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY 496 (564)
Q Consensus 420 ---dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~ 496 (564)
...+.|+++....+.... ...++|...+|.|.+. +..+++|-++..+.++|++.. ..+.+. ...=+
T Consensus 251 yfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~-------~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rN 319 (561)
T COG5354 251 YFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSS-------RFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRN 319 (561)
T ss_pred eeccceEEEEeecccccceec-cccccceeeeecccCC-------ceeEEecccccceeecccccc-eEEecC--Ccccc
Confidence 234667777644332222 4578999999999875 346778889999999999844 554443 33457
Q ss_pred EEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEE-EEecCCCEEEEEEccCCCEEEEEEc------CCcEEEEEe
Q 008467 497 SLAFSPTGEYLASGSLD---KSMHIWSLKEGKIVK-TYTGNGGIFEVCWNKEGDKIAACFA------NHTVCVLDF 562 (564)
Q Consensus 497 ~~~~spdg~~lasgs~d---g~i~iw~~~~~~~~~-~~~~~~~i~~~~w~~~g~~la~~~~------~~~v~v~~~ 562 (564)
.+.|||.+++++.++.| |.|-||+.....++. .+.+.. ..-+.|+|||+++-+.+. |..+.|||+
T Consensus 320 T~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n-~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 320 TIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN-TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred cccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC-ceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence 78999999999998876 689999998765554 454332 233469999998887754 345778876
No 238
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=2.5e-11 Score=118.09 Aligned_cols=272 Identities=17% Similarity=0.370 Sum_probs=168.7
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECCCc-eeEeecCCCCCEEEEEeCCCCCEEEEe-----eCCC-----cEEEEE
Q 008467 276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTG-----SCDK-----TAIVWD 344 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~-----s~D~-----~v~iwd 344 (564)
.+....++|++|++++.+. +..++|++.... ...+.. ...++.+.|+|.|++|.+- ..++ .+.+|+
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~--~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVE--LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEec--cceeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 3467788999999988755 568888886533 222222 2278999999999998762 2233 467999
Q ss_pred CCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCc----------------------------------
Q 008467 345 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR---------------------------------- 390 (564)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~---------------------------------- 390 (564)
+.++.....+...........|..+..+++=-..+.+++++....+
T Consensus 112 vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kG 191 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKG 191 (566)
T ss_pred eccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCC
Confidence 9885433333322222123333333222222222223333222211
Q ss_pred ---eeeEec----C-C---------CcceEEEEECCCCCE-EE--EEeCCC---------cEEEEeCCCCeeeeeccccc
Q 008467 391 ---PIKTFA----G-H---------QGEVNCVKWDPTGSL-LA--SCSDDV---------TAKIWNMKQDKYVHDLREHS 441 (564)
Q Consensus 391 ---~~~~~~----~-h---------~~~i~~v~~~~~~~~-la--s~s~dg---------~i~iwd~~~~~~~~~~~~~~ 441 (564)
.++.+. + | ...=..+.|++-|+- |+ +..-|. ++.+.++....++..+. ..
T Consensus 192 aPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~ 270 (566)
T KOG2315|consen 192 APASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KE 270 (566)
T ss_pred CCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CC
Confidence 011111 0 0 011124567666542 22 222233 45566655434433332 36
Q ss_pred ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC---CcEEE
Q 008467 442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHI 518 (564)
Q Consensus 442 ~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d---g~i~i 518 (564)
++|+++.|+|.+. +..++.|-+-..+.|+|++ +.+++.+. .+|-+++-|+|.|++|+.+|.+ |.|-|
T Consensus 271 GPVhdv~W~~s~~-------EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEv 340 (566)
T KOG2315|consen 271 GPVHDVTWSPSGR-------EFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEV 340 (566)
T ss_pred CCceEEEECCCCC-------EEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEE
Confidence 8999999999885 3567778899999999998 77777764 4677999999999999998875 78999
Q ss_pred EeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcC------CcEEEEEe
Q 008467 519 WSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN------HTVCVLDF 562 (564)
Q Consensus 519 w~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~------~~v~v~~~ 562 (564)
||+.+.+++..+.... -+-+.|+|||.++.+|... ..+.||+.
T Consensus 341 wDv~n~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 341 WDVPNRKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred EeccchhhccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 9999988887776443 3456899999999888553 45777774
No 239
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.50 E-value=1.6e-12 Score=118.81 Aligned_cols=313 Identities=17% Similarity=0.299 Sum_probs=174.2
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccc--------cCCCCeEEEEECCCC-
Q 008467 217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN--------EKSKDVTTLDWNGEG- 287 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~V~~l~~s~~g- 287 (564)
.-|.++.|.-.|.+||||..+|.+.++.-..... +...... ....+.. .....|..+.|.+++
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~------~ey~~~t--~fqshepEFDYLkSleieEKinkIrw~~~~n 97 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYK------GEYNFQT--EFQSHEPEFDYLKSLEIEEKINKIRWLDDGN 97 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccc------cceeeee--eeeccCcccchhhhhhhhhhhhhceecCCCC
Confidence 4478999999999999999999999997443211 0001110 0111100 122357888998865
Q ss_pred -CEEEEEeCCCeEEEEECCCceeEe------ecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE-eeccc
Q 008467 288 -TLLATGSYDGQARIWSTNGDLKCT------LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF-EFHSG 359 (564)
Q Consensus 288 -~~l~sg~~dg~i~vw~~~~~~~~~------~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~ 359 (564)
..++..+.|.+|++|....+.... ..+..+.|++|+.- +.+..|-.+... +.+.+ ..|.-
T Consensus 98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p------~~~~~~~~vea~------prRv~aNaHty 165 (433)
T KOG1354|consen 98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLP------VEGRHDLEVEAS------PRRVYANAHTY 165 (433)
T ss_pred ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeece------eeccccceeeee------eeeecccccee
Confidence 467778899999999753211100 00011112222110 001111000000 00000 11222
Q ss_pred CeEEEEcCCCceEEEEeCCCeEEEEEcCCC---ceeeEecCC-----CcceEEEEECCCC-CEEEEEeCCCcEEEEeCCC
Q 008467 360 PTLDVDWRNNVSFATSSTDNMIYVCKIGEN---RPIKTFAGH-----QGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQ 430 (564)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~---~~~~~~~~h-----~~~i~~v~~~~~~-~~las~s~dg~i~iwd~~~ 430 (564)
.+.++....+..+..+..|-.|.+|.+.-. -.+...+.+ +.-|++..|+|.. ++++-.|..|+||+-|++.
T Consensus 166 hiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 166 HINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred EeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence 233333333333444444444444443211 111112222 2347888999864 6778888999999999985
Q ss_pred Ceeee----------------ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-CCeEEEEEeCCC-
Q 008467 431 DKYVH----------------DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKLLYSLNGHR- 492 (564)
Q Consensus 431 ~~~~~----------------~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h~- 492 (564)
..... -|..--..|..+.|++.|+ ++++-+. -+|++||+. ..+++.+..-|.
T Consensus 246 ~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGr---------yilsRDy-ltvk~wD~nme~~pv~t~~vh~~ 315 (433)
T KOG1354|consen 246 SALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGR---------YILSRDY-LTVKLWDLNMEAKPVETYPVHEY 315 (433)
T ss_pred hhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCc---------EEEEecc-ceeEEEeccccCCcceEEeehHh
Confidence 32210 1112224577889998886 6666432 689999983 455565555442
Q ss_pred -----------CCE---EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE-E-------------------Ee-c-----
Q 008467 493 -----------EPV---YSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK-T-------------------YT-G----- 532 (564)
Q Consensus 493 -----------~~i---~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~-~-------------------~~-~----- 532 (564)
..| ..++||-++.+++|||....+++|++..|.... + .. +
T Consensus 316 lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~ 395 (433)
T KOG1354|consen 316 LRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRD 395 (433)
T ss_pred HHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCcccc
Confidence 223 457899999999999999999999966553210 0 00 0
Q ss_pred ---------CCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467 533 ---------NGGIFEVCWNKEGDKIAACFANHTVCVL 560 (564)
Q Consensus 533 ---------~~~i~~~~w~~~g~~la~~~~~~~v~v~ 560 (564)
...|+..+|+|..+.+|++..| .+.||
T Consensus 396 ~~~vd~ldf~kkilh~aWhp~en~ia~aatn-nlyif 431 (433)
T KOG1354|consen 396 EISVDALDFRKKILHTAWHPKENSIAVAATN-NLYIF 431 (433)
T ss_pred ccccchhhhhhHHHhhccCCccceeeeeecC-ceEEe
Confidence 0124568999999999998776 45554
No 240
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.48 E-value=3e-11 Score=123.99 Aligned_cols=212 Identities=18% Similarity=0.258 Sum_probs=136.3
Q ss_pred CCeEEEEECCCCCEEEEEeCC---CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEE-EeeCCC--cEEEEECCCcc
Q 008467 276 KDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDK--TAIVWDVKTEE 349 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~d---g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~--~v~iwd~~~~~ 349 (564)
..+.+.+|+|||++|+.+... ..|++|+..+.....+..+.+.+.+++|+|+|+.|+ +.+.++ .|.+||+.++.
T Consensus 190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~ 269 (417)
T TIGR02800 190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ 269 (417)
T ss_pred CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence 357788999999999987754 479999987654445555667778899999998776 444444 46666765543
Q ss_pred eeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CC--cEEEE
Q 008467 350 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV--TAKIW 426 (564)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg--~i~iw 426 (564)
.. .+..+........|+|+|+.|+.++. ++ .|.+|
T Consensus 270 ~~------------------------------------------~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~ 307 (417)
T TIGR02800 270 LT------------------------------------------RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMM 307 (417)
T ss_pred EE------------------------------------------ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEE
Confidence 21 11122233345689999998877665 33 57777
Q ss_pred eCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC---eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCC
Q 008467 427 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS---TVKLWDVELGKLLYSLNGHREPVYSLAFSPT 503 (564)
Q Consensus 427 d~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~h~~~i~~~~~spd 503 (564)
++.+++. ..+..+...+....|+|++. .++.++.++ .|.+||+.++... .+... ......+|+||
T Consensus 308 d~~~~~~-~~l~~~~~~~~~~~~spdg~---------~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spd 375 (417)
T TIGR02800 308 DADGGEV-RRLTFRGGYNASPSWSPDGD---------LIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPN 375 (417)
T ss_pred ECCCCCE-EEeecCCCCccCeEECCCCC---------EEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCC
Confidence 8776653 33444455667788999875 455555554 7889998876542 23222 22355689999
Q ss_pred CCEEEEEeCCC---cEEEEeCCCCeEEEEEec-CCCEEEEEEc
Q 008467 504 GEYLASGSLDK---SMHIWSLKEGKIVKTYTG-NGGIFEVCWN 542 (564)
Q Consensus 504 g~~lasgs~dg---~i~iw~~~~~~~~~~~~~-~~~i~~~~w~ 542 (564)
|++|+.++.++ .+.+.+.. |+....+.. .+.+..++|+
T Consensus 376 g~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 376 GRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVREPAWS 417 (417)
T ss_pred CCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcCCCCCC
Confidence 99998777654 45555543 444444432 3445666664
No 241
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.47 E-value=8.2e-12 Score=131.39 Aligned_cols=252 Identities=17% Similarity=0.261 Sum_probs=175.0
Q ss_pred EECCCceeEeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCcc-----eeE--EEeecccCeEEEEc-CCCceE
Q 008467 302 WSTNGDLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEE-----WKQ--QFEFHSGPTLDVDW-RNNVSF 372 (564)
Q Consensus 302 w~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~-----~~~--~~~~~~~~~~~~~~-~~~~~~ 372 (564)
|+..|.++..+..|...|..++.++.. .+|+|||.||+|++||++... ... ++......+..+.. .+...|
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 888899999999999999998887665 899999999999999986422 222 23333445555554 355678
Q ss_pred EEEeCCCeEEEEEcCCCc-------eeeEecCCC-c-ceEEEEECC-CCC-EEEEEeCCCcEEEEeCCCCeeeeecc--c
Q 008467 373 ATSSTDNMIYVCKIGENR-------PIKTFAGHQ-G-EVNCVKWDP-TGS-LLASCSDDVTAKIWNMKQDKYVHDLR--E 439 (564)
Q Consensus 373 ~~~~~d~~i~~~~~~~~~-------~~~~~~~h~-~-~i~~v~~~~-~~~-~las~s~dg~i~iwd~~~~~~~~~~~--~ 439 (564)
|.++.||.|.+.+++... ..+....+. + .|.+-+|.. ++. .|+.+..-+.|..||.+.......++ .
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 889999999999987621 111111111 2 233334432 233 78888899999999998765544333 3
Q ss_pred ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe-CCCCCEEEEEEcCCC---CEEEEEe--CC
Q 008467 440 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GHREPVYSLAFSPTG---EYLASGS--LD 513 (564)
Q Consensus 440 ~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~~~~spdg---~~lasgs--~d 513 (564)
..+.|++++.+|.+. +++.|...|.+-+||++-+..+.+.. ++..+|..+..+|-- .+.++++ ..
T Consensus 1194 ~hG~vTSi~idp~~~---------WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ 1264 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCN---------WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSN 1264 (1431)
T ss_pred cccceeEEEecCCce---------EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCC
Confidence 457899999998764 79999999999999999888876653 355788888877643 4555554 46
Q ss_pred CcEEEEeCCCCeEEEEEecCCC--------------------EEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 514 KSMHIWSLKEGKIVKTYTGNGG--------------------IFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 514 g~i~iw~~~~~~~~~~~~~~~~--------------------i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
+.|.+|+..+|..-.++-...+ ....++...+..+.+|+.|..|+.||.
T Consensus 1265 nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1265 NEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred CceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence 7899999999865444422100 112334344557778888889998885
No 242
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=2.6e-11 Score=123.32 Aligned_cols=222 Identities=17% Similarity=0.156 Sum_probs=137.7
Q ss_pred CeEEEEECCCCCEE---EEEeCCC--eEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeC-CC----cEEEEECC
Q 008467 277 DVTTLDWNGEGTLL---ATGSYDG--QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DK----TAIVWDVK 346 (564)
Q Consensus 277 ~V~~l~~s~~g~~l---~sg~~dg--~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~----~v~iwd~~ 346 (564)
.+.+-.|||||+.+ .+...+| .|.+.+..+.....+....+.....+|+|||++|+..+. +| .+.+|++.
T Consensus 186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~ 265 (428)
T PRK01029 186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLE 265 (428)
T ss_pred CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecc
Confidence 34566899999752 2444444 466667766555555555666677899999998876542 22 12223332
Q ss_pred CcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe-CCCcEEE
Q 008467 347 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKI 425 (564)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s-~dg~i~i 425 (564)
.+. .+.+.+...++.+.....+|+|||+.|+..+ .+|...|
T Consensus 266 ~g~--------------------------------------~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~l 307 (428)
T PRK01029 266 TGA--------------------------------------IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRI 307 (428)
T ss_pred cCC--------------------------------------CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceE
Confidence 210 0111122222223345679999999877666 4676666
Q ss_pred EeC--CC-CeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC--CeEEEEeCCCCeEEEEEeCCCCCEEEEEE
Q 008467 426 WNM--KQ-DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD--STVKLWDVELGKLLYSLNGHREPVYSLAF 500 (564)
Q Consensus 426 wd~--~~-~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~h~~~i~~~~~ 500 (564)
|.+ .. +.....+..+...+....|+|+|. .++.++..+ ..|.+||+.+++.. .+......+....|
T Consensus 308 y~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~--------~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~w 378 (428)
T PRK01029 308 YIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGK--------KIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSW 378 (428)
T ss_pred EEEECcccccceEEeccCCCCccceeECCCCC--------EEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEE
Confidence 653 22 222334444455667889999985 233333332 47999999888754 33333345678999
Q ss_pred cCCCCEEEEEeC---CCcEEEEeCCCCeEEEEEecCCCEEEEEEccCC
Q 008467 501 SPTGEYLASGSL---DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEG 545 (564)
Q Consensus 501 spdg~~lasgs~---dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g 545 (564)
+|||++|+..+. ...|.+|++.+++........+.+...+|+|-.
T Consensus 379 SpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 379 AIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 999998875433 357899999888766666566667889999864
No 243
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.46 E-value=3e-12 Score=132.85 Aligned_cols=221 Identities=18% Similarity=0.272 Sum_probs=163.8
Q ss_pred CEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCe-----E
Q 008467 288 TLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT-----L 362 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-----~ 362 (564)
.+++++..-+.+..-..+......+. .-|+...+.-....++.+..++.+.+||...+............. .
T Consensus 62 ~~~v~~~~~~~v~~~~~~~~~~~~~s---~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~ 138 (967)
T KOG0974|consen 62 GKIVTCAKSDEVYVKEASNQIIERFS---DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLI 138 (967)
T ss_pred ceEEEEEeecceeecchhhhhhhhcc---ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEE
Confidence 34555554444443333222222222 334445556667789999999999999987765544333222111 1
Q ss_pred EEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeee-eccccc
Q 008467 363 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH-DLREHS 441 (564)
Q Consensus 363 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~-~~~~~~ 441 (564)
...-.....+++++.-+.|.+|+.....+-..+.||.+.|-.+.|+-||.+++|+|+|.++|+|++.+.+... ...+|+
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence 1122344567788888999999987544433688999999999999999999999999999999999887765 566899
Q ss_pred ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467 442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-EPVYSLAFSPTGEYLASGSLDKSMHIWS 520 (564)
Q Consensus 442 ~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~i~~~~~spdg~~lasgs~dg~i~iw~ 520 (564)
..+..+++.|. .++|++.|.+.++|+.. +..+..+.+|. ..|..++..++...++|++.|+.+++|+
T Consensus 219 aRvw~~~~~~n-----------~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 219 ARVWACCFLPN-----------RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred ceeEEEEeccc-----------eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 99999999885 48999999999999765 56666777775 5799999999999999999999999999
Q ss_pred CCC
Q 008467 521 LKE 523 (564)
Q Consensus 521 ~~~ 523 (564)
+..
T Consensus 287 l~~ 289 (967)
T KOG0974|consen 287 LNG 289 (967)
T ss_pred hhc
Confidence 865
No 244
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=5.3e-11 Score=122.41 Aligned_cols=204 Identities=16% Similarity=0.176 Sum_probs=133.5
Q ss_pred eEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCC---CcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEE
Q 008467 298 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT 374 (564)
Q Consensus 298 ~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (564)
.|.++|.+|.....+..+..++...+|+|+|++|+..+.+ ..|.+||+.+++...
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~---------------------- 237 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ---------------------- 237 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----------------------
Confidence 4777787776666666778889999999999998776543 257777776654221
Q ss_pred EeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEE-EEeCCC--cEEEEeCCCCeeeeecccccccEEEEEEcc
Q 008467 375 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDV--TAKIWNMKQDKYVHDLREHSKEIYTIRWSP 451 (564)
Q Consensus 375 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~la-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p 451 (564)
+....+.+...+|+|||+.|+ +.+.+| .|.+||+.++... .+..+........|+|
T Consensus 238 --------------------l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~sp 296 (430)
T PRK00178 238 --------------------ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGK 296 (430)
T ss_pred --------------------ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECC
Confidence 111112334588999999876 455555 5777898877543 3555555566778999
Q ss_pred CCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-C--cEEEEeCCCCeE
Q 008467 452 TGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD-K--SMHIWSLKEGKI 526 (564)
Q Consensus 452 ~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d-g--~i~iw~~~~~~~ 526 (564)
++. .++.+...+| .|.++|+.+++.. .+..........+|||||++|+..+.+ + .|.+||+.+++.
T Consensus 297 Dg~--------~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 297 DGR--------TLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred CCC--------EEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE
Confidence 875 2444444443 5777788777643 222122233457899999999877643 3 588899988765
Q ss_pred EEEEecCCCEEEEEEccCCCEEEEEEcC
Q 008467 527 VKTYTGNGGIFEVCWNKEGDKIAACFAN 554 (564)
Q Consensus 527 ~~~~~~~~~i~~~~w~~~g~~la~~~~~ 554 (564)
.. +.........+|+|+|+.|+.+...
T Consensus 368 ~~-lt~~~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 368 RI-LTDTSLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred EE-ccCCCCCCCceECCCCCEEEEEEec
Confidence 33 3322223356899999999877653
No 245
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=3.9e-11 Score=116.79 Aligned_cols=279 Identities=17% Similarity=0.227 Sum_probs=195.8
Q ss_pred CccceEEEEECCCCCE-EEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEE
Q 008467 215 HTSEVCACAWSPAGSL-LASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 293 (564)
Q Consensus 215 h~~~V~~~~~sp~~~~-lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg 293 (564)
|....+.+..+|||+| ||||..--.|++||+.+-. ++. ..+. .+..|...-.+.|-..++.-
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--------------LKF-ERhl--Dae~V~feiLsDD~SK~v~L 112 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--------------LKF-ERHL--DAEVVDFEILSDDYSKSVFL 112 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccce--------------eee-eecc--cccceeEEEeccchhhheEe
Confidence 4455677899999985 6777788999999986421 111 1111 12345555556666666666
Q ss_pred eCCCeEEEEECCCceeE-eecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCc-e
Q 008467 294 SYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-S 371 (564)
Q Consensus 294 ~~dg~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 371 (564)
-.|..|-+-...|.-.. .++ ..-..++++.-.--|+.++....|.-.++..|.++..|....+.+..+...+-. .
T Consensus 113 ~~DR~IefHak~G~hy~~RIP---~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgL 189 (703)
T KOG2321|consen 113 QNDRTIEFHAKYGRHYRTRIP---KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGL 189 (703)
T ss_pred ecCceeeehhhcCeeeeeecC---cCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccce
Confidence 67777777665543221 111 222445665444446666666788889999999999998888887777765544 4
Q ss_pred EEEEeCCCeEEEEEcCCCceeeEec------CCCc-----ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc
Q 008467 372 FATSSTDNMIYVCKIGENRPIKTFA------GHQG-----EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 440 (564)
Q Consensus 372 ~~~~~~d~~i~~~~~~~~~~~~~~~------~h~~-----~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~ 440 (564)
+++++.+|.+-.||......+..+. .|.+ .|+++.|+.+|-.++.|+.+|.+.|||+++.+++.. +.|
T Consensus 190 la~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh 268 (703)
T KOG2321|consen 190 LACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDH 268 (703)
T ss_pred EEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee-ccc
Confidence 5555669999999988765554442 2323 499999999999999999999999999999887643 334
Q ss_pred --cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 008467 441 --SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHI 518 (564)
Q Consensus 441 --~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~i 518 (564)
.-+|..+.|.+.+. +..++|. ....++|||-.+|+....+.. ...++.+++-|++-++.+|-.++.+..
T Consensus 269 ~~e~pi~~l~~~~~~~-------q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 269 GYELPIKKLDWQDTDQ-------QNKVVSM-DKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred CCccceeeecccccCC-------CceEEec-chHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCccee
Confidence 45788999987632 2245554 346799999999998877764 445999999999999999998888777
Q ss_pred EeCCC
Q 008467 519 WSLKE 523 (564)
Q Consensus 519 w~~~~ 523 (564)
|=+..
T Consensus 340 yyiP~ 344 (703)
T KOG2321|consen 340 YYIPS 344 (703)
T ss_pred EEccc
Confidence 76553
No 246
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=6.5e-11 Score=120.41 Aligned_cols=216 Identities=16% Similarity=0.180 Sum_probs=131.0
Q ss_pred CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEE---EEeeCCC--cEEEEECCCcceeEEEeecccCeEEEEcCCCce
Q 008467 297 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYL---LTGSCDK--TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 371 (564)
Q Consensus 297 g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l---~s~s~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (564)
..|.+.|.+|.....+......+.+-+|+|+|+.+ ++...++ .|.+.++.+++..
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-------------------- 224 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-------------------- 224 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce--------------------
Confidence 35666777776555566666677788999999752 2333333 3444455544311
Q ss_pred EEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CC----cEEEEeCCCC---eeeeeccccccc
Q 008467 372 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV----TAKIWNMKQD---KYVHDLREHSKE 443 (564)
Q Consensus 372 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg----~i~iwd~~~~---~~~~~~~~~~~~ 443 (564)
.+..+. +.....+|+|||+.||..++ +| .+.+|++..+ ........+...
T Consensus 225 -------------------~lt~~~---g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~ 282 (428)
T PRK01029 225 -------------------KILALQ---GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGT 282 (428)
T ss_pred -------------------EeecCC---CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCC
Confidence 111122 22335789999988876553 23 3445776542 222222222233
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEe--CCC-CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC---CcEE
Q 008467 444 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWD--VEL-GKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMH 517 (564)
Q Consensus 444 i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd--~~~-~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d---g~i~ 517 (564)
.....|+|+|. .++.+...+|...||. +.. +.....+..+...+...+|||||++|+..+.+ ..|.
T Consensus 283 ~~~p~wSPDG~--------~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~ 354 (428)
T PRK01029 283 QGNPSFSPDGT--------RLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQIC 354 (428)
T ss_pred cCCeEECCCCC--------EEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEE
Confidence 45679999886 2344444567555554 432 23344455455567789999999999876543 4699
Q ss_pred EEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcC---CcEEEEEe
Q 008467 518 IWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN---HTVCVLDF 562 (564)
Q Consensus 518 iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~---~~v~v~~~ 562 (564)
+||+.+++..........+..++|+|||+.|+....+ ..+.++|+
T Consensus 355 v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 355 VYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISL 402 (428)
T ss_pred EEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 9999988765544444456789999999998865432 34566664
No 247
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.42 E-value=4.2e-11 Score=117.46 Aligned_cols=188 Identities=20% Similarity=0.382 Sum_probs=153.4
Q ss_pred CCCCCEEEEeeCCCcEEEEECCCcceeEEEeecc---cCeEEEEcC---------------------CCceEEEEeCCCe
Q 008467 325 NKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS---GPTLDVDWR---------------------NNVSFATSSTDNM 380 (564)
Q Consensus 325 ~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~---------------------~~~~~~~~~~d~~ 380 (564)
.|...|++....||.+++||...++..+.|.... +...+..|. +...++.+...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3456789999999999999999988877664322 222333331 2235778888999
Q ss_pred EEEEEcCCCceeeEec--CCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCC
Q 008467 381 IYVCKIGENRPIKTFA--GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNN 458 (564)
Q Consensus 381 i~~~~~~~~~~~~~~~--~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~ 458 (564)
|..+++..++....+. +|.+.|+++.++.+-..|.|++.|+.+..|+.+..+.++.+......+.+++.+|++.
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~---- 157 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK---- 157 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC----
Confidence 9999998887766665 6889999999999999999999999999999999999888888888899999999975
Q ss_pred CCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCC-----CCEE-EEEeCCCcEEEEeCCC
Q 008467 459 PNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT-----GEYL-ASGSLDKSMHIWSLKE 523 (564)
Q Consensus 459 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spd-----g~~l-asgs~dg~i~iw~~~~ 523 (564)
+|+++| +.|++||+.+++.+.++.||.++|.+++|--+ |.++ .++..+.-|.+|-+..
T Consensus 158 -----~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 158 -----ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred -----EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 677776 78999999999999999999999999999877 5554 4556667788887754
No 248
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.2e-10 Score=113.08 Aligned_cols=314 Identities=16% Similarity=0.296 Sum_probs=187.7
Q ss_pred EEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC---
Q 008467 220 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD--- 296 (564)
Q Consensus 220 ~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d--- 296 (564)
+-+.|||-|++|+|--.-| |.+|-=.+-. ... .-....|.-++|||..++|+|=+..
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~----------------r~~---RF~Hp~Vq~idfSP~EkYLVT~s~~p~~ 273 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFD----------------RIQ---RFYHPGVQFIDFSPNEKYLVTYSPEPII 273 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHH----------------HHH---hccCCCceeeecCCccceEEEecCCccc
Confidence 4578999999999976655 5678421100 000 0113468899999999999987642
Q ss_pred --------CeEEEEECC-CceeEeecC--CCCCEEE-EEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEE
Q 008467 297 --------GQARIWSTN-GDLKCTLSK--HKGPIFS-LKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 364 (564)
Q Consensus 297 --------g~i~vw~~~-~~~~~~~~~--h~~~V~~-l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 364 (564)
..++|||.. |.++..+.. ...+++. .+||.++++++.... .+|.||+..+..+...-...-..+.++
T Consensus 274 ~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~F 352 (698)
T KOG2314|consen 274 VEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDF 352 (698)
T ss_pred cCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCc
Confidence 478999964 566666655 2333333 589999999987666 578898866544333222233345566
Q ss_pred EcCCCceEEE---EeCC---CeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe----------CCCcEEEEeC
Q 008467 365 DWRNNVSFAT---SSTD---NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS----------DDVTAKIWNM 428 (564)
Q Consensus 365 ~~~~~~~~~~---~~~d---~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s----------~dg~i~iwd~ 428 (564)
.|.+...+++ ...+ ..+.+..+...+.+++-.-|+-.=..+-|-.+|.+|+.-- .=..+.|+.+
T Consensus 353 swsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfri 432 (698)
T KOG2314|consen 353 SWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRI 432 (698)
T ss_pred ccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEe
Confidence 6765433221 1111 1233344444444433322222222355666666664321 1123556666
Q ss_pred CCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeC-CCeEEEEeCCC-C---eEEEEEeCCCCCEEEEEEcCC
Q 008467 429 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF-DSTVKLWDVEL-G---KLLYSLNGHREPVYSLAFSPT 503 (564)
Q Consensus 429 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~-~---~~~~~~~~h~~~i~~~~~spd 503 (564)
+..............|...+|-|.|. +..+++|.. -.++.+|.+++ + +++..+.. ...+.+.|||.
T Consensus 433 reKdIpve~velke~vi~FaWEP~gd-------kF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPk 503 (698)
T KOG2314|consen 433 REKDIPVEVVELKESVIAFAWEPHGD-------KFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPK 503 (698)
T ss_pred eccCCCceeeecchheeeeeeccCCC-------eEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCC
Confidence 55443323333456788999999885 234444432 35788888773 2 22333332 45688999999
Q ss_pred CCEEEEE---eCCCcEEEEeCCCCeEEEE-EecCCCEEEEEEccCCCEEEEEEcCCc------EEEEEee
Q 008467 504 GEYLASG---SLDKSMHIWSLKEGKIVKT-YTGNGGIFEVCWNKEGDKIAACFANHT------VCVLDFR 563 (564)
Q Consensus 504 g~~lasg---s~dg~i~iw~~~~~~~~~~-~~~~~~i~~~~w~~~g~~la~~~~~~~------v~v~~~~ 563 (564)
|++++.+ |..|.+.++|..-..+..+ ...+...+.+.|+|.|+++++|+.... -.+|+|+
T Consensus 504 G~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 504 GRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred CcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 9999875 4578899999874332222 123445678999999999999987543 3566664
No 249
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=4.3e-11 Score=111.47 Aligned_cols=238 Identities=17% Similarity=0.268 Sum_probs=164.9
Q ss_pred CCEEEEEeCCCCC--EEEEeeCCCcEEEEECCCcceeEEE------eecccCeEEEEcCCCceEEEEeCCCeEEEEEcCC
Q 008467 317 GPIFSLKWNKKGD--YLLTGSCDKTAIVWDVKTEEWKQQF------EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 388 (564)
Q Consensus 317 ~~V~~l~~~~~~~--~l~s~s~D~~v~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 388 (564)
..|.++.|..+++ .|+.++.|..+...+.....+.... .+...++..+.. .+..+++|-.+|.+.+|....
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~-~dg~Litc~~sG~l~~~~~k~ 134 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL-ADGTLITCVSSGNLQVRHDKS 134 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh-cCCEEEEEecCCcEEEEeccC
Confidence 3455566654443 3444446666666655544433332 122223333222 345678888999999998863
Q ss_pred C----ceeeEecCCCcceEEEEECCCC-CEEEEEeCC--CcEEEEeCCCCeeeeeccccc---------ccEEEEEEccC
Q 008467 389 N----RPIKTFAGHQGEVNCVKWDPTG-SLLASCSDD--VTAKIWNMKQDKYVHDLREHS---------KEIYTIRWSPT 452 (564)
Q Consensus 389 ~----~~~~~~~~h~~~i~~v~~~~~~-~~las~s~d--g~i~iwd~~~~~~~~~~~~~~---------~~i~~i~~~p~ 452 (564)
+ .+...+..+ ..+..+.-++.. .++|+|+.. ..++|||+.+.+.+.+-+.-. -.++.+.|-|.
T Consensus 135 ~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g 213 (412)
T KOG3881|consen 135 GDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEG 213 (412)
T ss_pred CccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCC
Confidence 2 233333333 234445545544 456779998 889999998886554432211 13456666654
Q ss_pred CCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE-E
Q 008467 453 GSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT-Y 530 (564)
Q Consensus 453 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~-~ 530 (564)
.. ...||++..-+.||+||.+.++ ++..+.--..+|+++...|+|++|.+|..-|.+..||.+.+++... +
T Consensus 214 ~~-------~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~ 286 (412)
T KOG3881|consen 214 SP-------NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL 286 (412)
T ss_pred CC-------CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecccc
Confidence 21 3479999999999999999764 5677776678999999999999999999999999999999998776 5
Q ss_pred ec-CCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 531 TG-NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 531 ~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
.+ .++|.++.-+|.+.+||.|+-|..|+|+|++
T Consensus 287 kg~tGsirsih~hp~~~~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 287 KGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIK 320 (412)
T ss_pred CCccCCcceEEEcCCCceEEeeccceeEEEeecc
Confidence 54 5679999999999999999999999999986
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=1.2e-10 Score=119.44 Aligned_cols=204 Identities=17% Similarity=0.212 Sum_probs=129.9
Q ss_pred eEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCC-C--cEEEEECCCcceeEEEeecccCeEEEEcCCCceEEE
Q 008467 298 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-K--TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT 374 (564)
Q Consensus 298 ~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (564)
.+.++|.+|.....+..+..++.+..|+|+|+.|+..+.+ + .|.+||+.+++...
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~---------------------- 256 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK---------------------- 256 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----------------------
Confidence 5667787776555666778889999999999998866543 2 46677776654211
Q ss_pred EeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEE-EeCCCc--EEEEeCCCCeeeeecccccccEEEEEEcc
Q 008467 375 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS-CSDDVT--AKIWNMKQDKYVHDLREHSKEIYTIRWSP 451 (564)
Q Consensus 375 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las-~s~dg~--i~iwd~~~~~~~~~~~~~~~~i~~i~~~p 451 (564)
+..+.+ .....+|+|||+.|+. .+.+|. |.+||+.++.. ..+..+........|+|
T Consensus 257 -----------------lt~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp 315 (448)
T PRK04792 257 -----------------VTSFPG---INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHP 315 (448)
T ss_pred -----------------ecCCCC---CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECC
Confidence 111111 2235789999997764 566675 66778876654 34444555567789999
Q ss_pred CCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCeE
Q 008467 452 TGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL-DK--SMHIWSLKEGKI 526 (564)
Q Consensus 452 ~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~-dg--~i~iw~~~~~~~ 526 (564)
++. .++++...++ .|.++|+.+++.. .+..........+|+|||++|+..+. ++ .|.++|+.+++.
T Consensus 316 DG~--------~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 316 DGK--------SLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM 386 (448)
T ss_pred CCC--------EEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe
Confidence 875 2444444444 4666677766643 23222222345789999999987655 33 466678887765
Q ss_pred EEEEecCCCEEEEEEccCCCEEEEEEcC
Q 008467 527 VKTYTGNGGIFEVCWNKEGDKIAACFAN 554 (564)
Q Consensus 527 ~~~~~~~~~i~~~~w~~~g~~la~~~~~ 554 (564)
.. +.........+|+|+|+.|+....+
T Consensus 387 ~~-lt~~~~d~~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 387 QV-LTSTRLDESPSVAPNGTMVIYSTTY 413 (448)
T ss_pred EE-ccCCCCCCCceECCCCCEEEEEEec
Confidence 33 2222223356899999998876654
No 251
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=9.5e-11 Score=120.56 Aligned_cols=215 Identities=16% Similarity=0.192 Sum_probs=133.0
Q ss_pred CCeEEEEECCCCCEEEEEeCC---CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEE-EeeCCC--cEEEEECCCcc
Q 008467 276 KDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDK--TAIVWDVKTEE 349 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~d---g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~--~v~iwd~~~~~ 349 (564)
..+....|||||+.|+..+.+ ..|.+|+..+.....+....+.+....|+|+|+.|+ +.+.++ .|.+||+.++.
T Consensus 199 ~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~ 278 (430)
T PRK00178 199 EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ 278 (430)
T ss_pred CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 468889999999999877654 368888987654444544555566789999999876 444444 46666766543
Q ss_pred eeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CC--cEEEE
Q 008467 350 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV--TAKIW 426 (564)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg--~i~iw 426 (564)
.. .+..+........|+|||+.|+..++ +| .|.++
T Consensus 279 ~~------------------------------------------~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~ 316 (430)
T PRK00178 279 LS------------------------------------------RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKV 316 (430)
T ss_pred eE------------------------------------------EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 21 12223333445789999998776664 33 46667
Q ss_pred eCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCC
Q 008467 427 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTG 504 (564)
Q Consensus 427 d~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg 504 (564)
++.+++.. .+...........|+|++. .++++...++ .|.+||+.+++.. .+.. ........|+|||
T Consensus 317 d~~~g~~~-~lt~~~~~~~~~~~Spdg~--------~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg 385 (430)
T PRK00178 317 NVNGGRAE-RVTFVGNYNARPRLSADGK--------TLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNG 385 (430)
T ss_pred ECCCCCEE-EeecCCCCccceEECCCCC--------EEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCC
Confidence 77666532 2222222234567888875 2333333333 5888999877643 2321 2222356899999
Q ss_pred CEEEEEeCC---CcEEEEeCCCCeEEEEEec-CCCEEEEEEccC
Q 008467 505 EYLASGSLD---KSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKE 544 (564)
Q Consensus 505 ~~lasgs~d---g~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~ 544 (564)
++|+..+.+ ..|.++++.. .....+.. .+.+...+|+|-
T Consensus 386 ~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 386 TMLIYATRQQGRGVLMLVSING-RVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CEEEEEEecCCceEEEEEECCC-CceEECcCCCCCcCCCccCCC
Confidence 999876643 3577777753 33333333 345778889873
No 252
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.2e-10 Score=113.39 Aligned_cols=293 Identities=17% Similarity=0.333 Sum_probs=182.7
Q ss_pred ceEEEEECCCCCEEEEE-----ECCCc-----EEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467 218 EVCACAWSPAGSLLASG-----SGDST-----ARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 287 (564)
Q Consensus 218 ~V~~~~~sp~~~~lasg-----s~D~~-----i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 287 (564)
.++++.|||.|.+|.|= ..|+. +++|++.++..... +.. ....+ .+..|+.|.
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~----------~q~-----k~Q~~--W~~qfs~dE 137 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQ----------IQK-----KMQNG--WVPQFSIDE 137 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhh----------eeh-----hhhcC--cccccccch
Confidence 67899999999998762 12332 44777665321100 000 00111 467888876
Q ss_pred CEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCC--CEEEE-----eeCCCcEEEEECCCcceeEEE---eec
Q 008467 288 TLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG--DYLLT-----GSCDKTAIVWDVKTEEWKQQF---EFH 357 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~--~~l~s-----~s~D~~v~iwd~~~~~~~~~~---~~~ 357 (564)
.+. .--..+.+.+|+..+.....-.-|...|..+.++|.+ ..+++ .+.-..|+||-..-....+.. .+.
T Consensus 138 sl~-arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF 216 (566)
T KOG2315|consen 138 SLA-ARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF 216 (566)
T ss_pred hhh-hhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc
Confidence 543 3334578999998764333344467788888999873 23332 455678999976522211111 111
Q ss_pred ccCeEEEEcCC--CceE--EEEeC---------CCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEE--eCCCc
Q 008467 358 SGPTLDVDWRN--NVSF--ATSST---------DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC--SDDVT 422 (564)
Q Consensus 358 ~~~~~~~~~~~--~~~~--~~~~~---------d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~--s~dg~ 422 (564)
...-..+.|.. ...+ ++..- ..++++..+........+ ...++|.++.|+|+|+-++.+ -.--+
T Consensus 217 kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAk 295 (566)
T KOG2315|consen 217 KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAK 295 (566)
T ss_pred ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccce
Confidence 22334455642 2222 22222 335777777643333333 247899999999999876654 44668
Q ss_pred EEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeC---CCeEEEEeCCCCeEEEEEeCCCCCEEEEE
Q 008467 423 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF---DSTVKLWDVELGKLLYSLNGHREPVYSLA 499 (564)
Q Consensus 423 i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~h~~~i~~~~ 499 (564)
+.|+|++ +.++..+ ..++-.++-|+|.|. +|+.+++ -|.|-|||+.+.+++..+..-. -+-..
T Consensus 296 vtifnlr-~~~v~df--~egpRN~~~fnp~g~---------ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~e 361 (566)
T KOG2315|consen 296 VTIFNLR-GKPVFDF--PEGPRNTAFFNPHGN---------IILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFE 361 (566)
T ss_pred EEEEcCC-CCEeEeC--CCCCccceEECCCCC---------EEEEeecCCCCCceEEEeccchhhccccccCC--ceEEE
Confidence 8999976 4455554 346668889999885 4555554 4889999999988888776543 35578
Q ss_pred EcCCCCEEEEEeC------CCcEEEEeCCCCeEEEEEecCCCEEEEEEccC
Q 008467 500 FSPTGEYLASGSL------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE 544 (564)
Q Consensus 500 ~spdg~~lasgs~------dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~ 544 (564)
|+|||++++|++. |+.++||+.. |.++....-....+.++|-|-
T Consensus 362 W~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 362 WSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMFKSELLQVEWRPF 411 (566)
T ss_pred EcCCCcEEEEEeccccEEecCCeEEEEec-CceeehhhhhHhHhheeeeec
Confidence 9999999998865 6789999984 666655433335778888864
No 253
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.39 E-value=8.8e-10 Score=109.30 Aligned_cols=267 Identities=16% Similarity=0.178 Sum_probs=169.7
Q ss_pred CEE-EEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEE
Q 008467 288 TLL-ATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 365 (564)
Q Consensus 288 ~~l-~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (564)
+++ ++-..+|.|.+.|... +....+.....+-..+.|+|+|+++++++.|+.|.++|+.+++.+.++.....+ ..+.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~-~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNP-RGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEE-EEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCc-ceEE
Confidence 344 4455679999999764 455666654444455789999999999999999999999999988887665443 3444
Q ss_pred cC--CCceEEEEeCCCeEEEEEcCCCceeeEecCC-------CcceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCeeee
Q 008467 366 WR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGH-------QGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDKYVH 435 (564)
Q Consensus 366 ~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h-------~~~i~~v~~~~~~~~las~s~-dg~i~iwd~~~~~~~~ 435 (564)
.. ....++++...+.+.++|..+.++++.+... ...+.++..+|....++..-. .+.|-+-|......+.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 43 3445566778999999999998888876533 346778888888885555544 4777777866544332
Q ss_pred -ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe----CCCCCEEEE-------EEc--
Q 008467 436 -DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN----GHREPVYSL-------AFS-- 501 (564)
Q Consensus 436 -~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~h~~~i~~~-------~~s-- 501 (564)
.............|.|+++ +++++....+.|-++|..+++.+..+. .|..++..+ .|.
T Consensus 165 ~~~i~~g~~~~D~~~dpdgr--------y~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~ 236 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGR--------YFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATS 236 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSS--------EEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEE
T ss_pred eeeecccccccccccCcccc--------eeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeec
Confidence 2222344567788888775 466666778899999999998877653 233333332 122
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEE----EcCCcEEEEEee
Q 008467 502 PTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAAC----FANHTVCVLDFR 563 (564)
Q Consensus 502 pdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~----~~~~~v~v~~~~ 563 (564)
..+.+.++.-....+.+|+..+.+.+++....++...+.-+|++++|.+. ....+|+|+|.+
T Consensus 237 ~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~ 302 (369)
T PF02239_consen 237 GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKK 302 (369)
T ss_dssp BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECC
T ss_pred cccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECc
Confidence 22333323222335778999999999999876666888999999999998 344789999875
No 254
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.37 E-value=1.9e-10 Score=112.86 Aligned_cols=208 Identities=17% Similarity=0.252 Sum_probs=143.5
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCCCCCCCCC----CCceEEEEEeeccccccCCCCeEEEEE----CCCCCEEEEEeCCC
Q 008467 226 PAGSLLASGSGDSTARIWTIADGTSNGGAQN----GPLNVLVLKHVKGRTNEKSKDVTTLDW----NGEGTLLATGSYDG 297 (564)
Q Consensus 226 p~~~~lasgs~D~~i~iW~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~V~~l~~----s~~g~~l~sg~~dg 297 (564)
|...++|....||.+|||+...++....... ...+........... .....+++.| +.+-..++-|...|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~--s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADY--SPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEecc--chHHHHhHHHHhhccCCceEEEeecCCc
Confidence 4567999999999999999876543211110 000000000000000 0000111111 23456788899999
Q ss_pred eEEEEECC-CceeEee--cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEE
Q 008467 298 QARIWSTN-GDLKCTL--SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT 374 (564)
Q Consensus 298 ~i~vw~~~-~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (564)
.|.+|+.. |++...+ .+|.++|.++.|+.+-..|.|++.|+.+..|+...+..+..
T Consensus 81 ~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~--------------------- 139 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRI--------------------- 139 (541)
T ss_pred cEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeee---------------------
Confidence 99999976 4555444 47999999999999999999999999999999877543322
Q ss_pred EeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCC
Q 008467 375 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 454 (564)
Q Consensus 375 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~ 454 (564)
+.+....+.+++++|||+.++++| +.|++||+++++.+..|.+|.++|.++.|...-.
T Consensus 140 --------------------~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~ 197 (541)
T KOG4547|consen 140 --------------------WKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLID 197 (541)
T ss_pred --------------------eccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEecc
Confidence 223334567899999999998886 4899999999999999999999999999976511
Q ss_pred CCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 008467 455 GTNNPNQQLILASASFDSTVKLWDVEL 481 (564)
Q Consensus 455 ~~~~~~~~~~l~s~s~dg~i~iwd~~~ 481 (564)
.....++|.+...+.-+.+|-++.
T Consensus 198 ---g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 198 ---GIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ---ccccceeeeccccccceeEEEEEc
Confidence 112346788888888888997654
No 255
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.35 E-value=3.6e-11 Score=125.01 Aligned_cols=199 Identities=18% Similarity=0.209 Sum_probs=155.7
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467 217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 296 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 296 (564)
..|+.+.+.-+.+.++.+..+..+-|||...+......+...... .....-+-.+++.-++++|+.-
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~-------------l~~~~~~g~s~~~~~i~~gsv~ 154 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCT-------------LYSSLIIGDSAEELYIASGSVF 154 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEE-------------EEeEEEEeccCcEEEEEecccc
Confidence 445556777788889999999999999987654322211111000 0112233457777899999999
Q ss_pred CeEEEEECCCceeE-eecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeE-EEeecccCeEEEEcCCCceEEE
Q 008467 297 GQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ-QFEFHSGPTLDVDWRNNVSFAT 374 (564)
Q Consensus 297 g~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 374 (564)
+.|.+|......+. .+.+|.+.|+++.|+-+|.+++++|.|+++|+|++.+.+... ....|...+..+.+.++ .+++
T Consensus 155 ~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t 233 (967)
T KOG0974|consen 155 GEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIIT 233 (967)
T ss_pred ccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEE
Confidence 99999997644333 588999999999999999999999999999999999988766 55668888888888888 8999
Q ss_pred EeCCCeEEEEEcCCCceeeEecCCCc-ceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008467 375 SSTDNMIYVCKIGENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 430 (564)
Q Consensus 375 ~~~d~~i~~~~~~~~~~~~~~~~h~~-~i~~v~~~~~~~~las~s~dg~i~iwd~~~ 430 (564)
.+.|-+.++|+... ....++.+|.+ .|..++..++...++|++.|+.+++|++..
T Consensus 234 ~gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 234 VGEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eccceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99999999996643 33447888876 589999999999999999999999999754
No 256
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.35 E-value=3.1e-08 Score=98.34 Aligned_cols=265 Identities=15% Similarity=0.259 Sum_probs=163.7
Q ss_pred EEEEeCC----CeEEEEECC---Ccee--EeecCCCCCEEEEEeCCCCCEEEEeeC----CCcEEEEECCCc--cee--E
Q 008467 290 LATGSYD----GQARIWSTN---GDLK--CTLSKHKGPIFSLKWNKKGDYLLTGSC----DKTAIVWDVKTE--EWK--Q 352 (564)
Q Consensus 290 l~sg~~d----g~i~vw~~~---~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s~----D~~v~iwd~~~~--~~~--~ 352 (564)
++.|++. +.|.+|..+ +.+. .... -......|.++|++++|++... ++.|..|.+... .+. .
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4455555 678877652 2222 1121 2233456889999999998876 468988887653 332 2
Q ss_pred EEeecccCeEEEEc--CCCceEEEEeCCCeEEEEEcCCCceee----Eec----------CCCcceEEEEECCCCCEEEE
Q 008467 353 QFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIK----TFA----------GHQGEVNCVKWDPTGSLLAS 416 (564)
Q Consensus 353 ~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~----~~~----------~h~~~i~~v~~~~~~~~las 416 (564)
...........+.. .....+++.-.++.+.++++.....+. .+. .-.....++.++|+++++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 33322333334444 334455666679999999998742221 111 11234678999999998877
Q ss_pred EeC-CCcEEEEeCCCCe--ee--eecc-cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC--CCeE--EE
Q 008467 417 CSD-DVTAKIWNMKQDK--YV--HDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE--LGKL--LY 486 (564)
Q Consensus 417 ~s~-dg~i~iwd~~~~~--~~--~~~~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~--~~~~--~~ 486 (564)
+.. ...|.+|++.... .. ..+. .....-..+.|+|++. .+.++.-.+++|.++++. .+.. +.
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~--------~~Yv~~e~s~~v~v~~~~~~~g~~~~~~ 232 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGK--------YAYVVNELSNTVSVFDYDPSDGSLTEIQ 232 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSS--------EEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcC--------EEEEecCCCCcEEEEeecccCCceeEEE
Confidence 643 4579999887654 21 2222 2234457788988764 455667788999999987 4533 22
Q ss_pred EEeCC------CCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCC--CCeE--EEEEecCC-CEEEEEEccCCCEEEEEE-c
Q 008467 487 SLNGH------REPVYSLAFSPTGEYLASGS-LDKSMHIWSLK--EGKI--VKTYTGNG-GIFEVCWNKEGDKIAACF-A 553 (564)
Q Consensus 487 ~~~~h------~~~i~~~~~spdg~~lasgs-~dg~i~iw~~~--~~~~--~~~~~~~~-~i~~~~w~~~g~~la~~~-~ 553 (564)
.+... ......|++||||++|.++. ..+.|.+|++. +|++ +..+...+ ....++++|+|++|+++. .
T Consensus 233 ~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 233 TISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp EEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred EeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence 22211 12578899999999987665 56789999993 3443 44444433 478999999999999876 4
Q ss_pred CCcEEEEEee
Q 008467 554 NHTVCVLDFR 563 (564)
Q Consensus 554 ~~~v~v~~~~ 563 (564)
++.|.||++.
T Consensus 313 s~~v~vf~~d 322 (345)
T PF10282_consen 313 SNTVSVFDID 322 (345)
T ss_dssp TTEEEEEEEE
T ss_pred CCeEEEEEEe
Confidence 5689999874
No 257
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=2.9e-10 Score=116.61 Aligned_cols=214 Identities=16% Similarity=0.223 Sum_probs=129.3
Q ss_pred CCeEEEEECCCCCEEEEEeCC-C--eEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEE-eeCCCc--EEEEECCCcc
Q 008467 276 KDVTTLDWNGEGTLLATGSYD-G--QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT-GSCDKT--AIVWDVKTEE 349 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~d-g--~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~D~~--v~iwd~~~~~ 349 (564)
..+.+..|||||+.|+..+.+ + .|.+|+..+.....+....+......|+|+|+.|+. .+.++. |.+||+.+++
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~ 297 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA 297 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC
Confidence 457788999999998876543 3 577888765443334333344457899999998764 455554 5555655443
Q ss_pred eeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CCc--EEEE
Q 008467 350 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVT--AKIW 426 (564)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg~--i~iw 426 (564)
.. .+..+.......+|+|||+.|+..+. ++. |.++
T Consensus 298 ~~------------------------------------------~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~ 335 (448)
T PRK04792 298 LT------------------------------------------RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRV 335 (448)
T ss_pred eE------------------------------------------ECccCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 21 12223334456789999998776654 444 5556
Q ss_pred eCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCC
Q 008467 427 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTG 504 (564)
Q Consensus 427 d~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg 504 (564)
|+.+++.. .+...........|+|+|. .++++...++ .|.++|+.+++.. .+... ......+|+|||
T Consensus 336 dl~~g~~~-~Lt~~g~~~~~~~~SpDG~--------~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG 404 (448)
T PRK04792 336 NLASGKVS-RLTFEGEQNLGGSITPDGR--------SMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNG 404 (448)
T ss_pred ECCCCCEE-EEecCCCCCcCeeECCCCC--------EEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCC
Confidence 77666543 2222222234568888875 3444444445 4555788777643 23322 122345899999
Q ss_pred CEEEEEeCC-C--cEEEEeCCCCeEEEEEec-CCCEEEEEEcc
Q 008467 505 EYLASGSLD-K--SMHIWSLKEGKIVKTYTG-NGGIFEVCWNK 543 (564)
Q Consensus 505 ~~lasgs~d-g--~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~ 543 (564)
++|+..+.+ | .+.+++. +|.....+.. .+.+...+|+|
T Consensus 405 ~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 405 TMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 998765543 3 3777776 4555555543 34577889987
No 258
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.34 E-value=1.1e-10 Score=104.91 Aligned_cols=181 Identities=19% Similarity=0.299 Sum_probs=133.2
Q ss_pred EEEEeCCCeEEEEEcCCCceeeEecCCCc------ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee--eeeccccccc
Q 008467 372 FATSSTDNMIYVCKIGENRPIKTFAGHQG------EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDLREHSKE 443 (564)
Q Consensus 372 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~------~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~--~~~~~~~~~~ 443 (564)
++.....|.|.++..........|++-.. ...++.|++.+..++++-.+|.+.+-+...... ++..+.|.-+
T Consensus 88 l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E 167 (339)
T KOG0280|consen 88 LLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE 167 (339)
T ss_pred eeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee
Confidence 34455667777777665444334433221 245788999999999999999998666554443 3477889999
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-CCeEEEE-EeCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEe
Q 008467 444 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKLLYS-LNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWS 520 (564)
Q Consensus 444 i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~-~~~h~~~i~~~~~sp-dg~~lasgs~dg~i~iw~ 520 (564)
++...|+-... .++.+|+.|+.+..||++ .++.++. .+-|...|.+|.-|| .+.+|++|+.|-.|++||
T Consensus 168 ~Wta~f~~~~p--------nlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D 239 (339)
T KOG0280|consen 168 AWTAKFSDKEP--------NLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLD 239 (339)
T ss_pred eeeeecccCCC--------ceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeee
Confidence 99988875432 378999999999999999 4555655 566888999998886 478999999999999999
Q ss_pred CCC-CeEEEEEecCCCEEEEEEccCC--CEEEEEEcCCcEEEEE
Q 008467 521 LKE-GKIVKTYTGNGGIFEVCWNKEG--DKIAACFANHTVCVLD 561 (564)
Q Consensus 521 ~~~-~~~~~~~~~~~~i~~~~w~~~g--~~la~~~~~~~v~v~~ 561 (564)
.++ ++.+..-.-.++|+.+.|+|.- ..||+|..+| ..|.+
T Consensus 240 tRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~ 282 (339)
T KOG0280|consen 240 TRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILD 282 (339)
T ss_pred hhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-ceEEE
Confidence 984 5666555556889999999964 4667776665 44444
No 259
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=4.9e-10 Score=108.88 Aligned_cols=274 Identities=18% Similarity=0.297 Sum_probs=173.0
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCC-----------CcEEEEECC
Q 008467 278 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-----------KTAIVWDVK 346 (564)
Q Consensus 278 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-----------~~v~iwd~~ 346 (564)
-+-+.|||.|++|+|--.-| |.+|--..-....--.|++ |.-+.|||+.+||+|-|.. ..++|||+.
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 46789999999999876654 6788543211111123554 6778999999999997642 579999999
Q ss_pred CcceeEEEeecccC--e-EEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCC---
Q 008467 347 TEEWKQQFEFHSGP--T-LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD--- 420 (564)
Q Consensus 347 ~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~d--- 420 (564)
+|...+.|.....+ . .-+.|..+..|.+.-..+.|.++....-.++..-.-.-..|....|+|.+++||-=+..
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~ 370 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNN 370 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccC
Confidence 99999888764333 2 23578888888777777888888765422221111112457778899999988754321
Q ss_pred --CcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEE----------EeCCCeEEEEeCCCCeEEEEE
Q 008467 421 --VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS----------ASFDSTVKLWDVELGKLLYSL 488 (564)
Q Consensus 421 --g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s----------~s~dg~i~iwd~~~~~~~~~~ 488 (564)
..+.+-.+.+++.+++-.-|+-.=..+.|...|. +|+. .+.-..+.|+.++........
T Consensus 371 ~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd---------yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ 441 (698)
T KOG2314|consen 371 IPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD---------YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV 441 (698)
T ss_pred CcceEEEEecCccceeeeccceeeeccEEEeccCCc---------EEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence 2345555555555554444433334566766553 3332 111123445554432221111
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEeCCC----CeEEEEEecCCCEEEEEEccCCCEEEEE---EcCCcEE
Q 008467 489 NGHREPVYSLAFSPTGEYLASGSL---DKSMHIWSLKE----GKIVKTYTGNGGIFEVCWNKEGDKIAAC---FANHTVC 558 (564)
Q Consensus 489 ~~h~~~i~~~~~spdg~~lasgs~---dg~i~iw~~~~----~~~~~~~~~~~~i~~~~w~~~g~~la~~---~~~~~v~ 558 (564)
-.-..+|...+|-|.|..+++-+. ..++.+|.+++ .++++.+.. .-.+.+.|+|.|..++++ +..|.+.
T Consensus 442 velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~ 520 (698)
T KOG2314|consen 442 VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKGRFVVVAALVSRRGDLE 520 (698)
T ss_pred eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCCCcEEEEEEecccccceE
Confidence 223467888999999988775443 35788998873 235555554 346789999999988866 4467888
Q ss_pred EEEee
Q 008467 559 VLDFR 563 (564)
Q Consensus 559 v~~~~ 563 (564)
.+|..
T Consensus 521 F~D~~ 525 (698)
T KOG2314|consen 521 FYDTD 525 (698)
T ss_pred EEecc
Confidence 88753
No 260
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.33 E-value=8e-09 Score=113.58 Aligned_cols=323 Identities=19% Similarity=0.360 Sum_probs=190.7
Q ss_pred ccceEEEEECCCCCEEEEEECCCcEEEEeCC----CCCCCCC---CCCCCceE-------E----EEE-------ee---
Q 008467 216 TSEVCACAWSPAGSLLASGSGDSTARIWTIA----DGTSNGG---AQNGPLNV-------L----VLK-------HV--- 267 (564)
Q Consensus 216 ~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~----~~~~~~~---~~~~~~~~-------~----~~~-------~~--- 267 (564)
..+|.|++||||+.+||...+++++.+-+-. ....... ....++++ . .-+ ..
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 4689999999999999999999888765321 0000000 00000000 0 000 00
Q ss_pred ---ccccccCCCCeEEEEECCCCCEEEEEeC---C---CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeC--
Q 008467 268 ---KGRTNEKSKDVTTLDWNGEGTLLATGSY---D---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-- 336 (564)
Q Consensus 268 ---~~~~~~~~~~V~~l~~s~~g~~l~sg~~---d---g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-- 336 (564)
.+... ....-..++|-.||.++|+.+. . ..+|||+.+|.+..+...-.+--.+++|.|.|+.|++...
T Consensus 200 ~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~ 278 (928)
T PF04762_consen 200 KVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLP 278 (928)
T ss_pred ccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcC
Confidence 01111 2334568899999999999875 2 5899999998876655444444457899999999988764
Q ss_pred -CCcEEEEECCCcceeEEEeec----ccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCc----eeeEecCCCcceEEEEE
Q 008467 337 -DKTAIVWDVKTEEWKQQFEFH----SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR----PIKTFAGHQGEVNCVKW 407 (564)
Q Consensus 337 -D~~v~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~----~~~~~~~h~~~i~~v~~ 407 (564)
...|.+|. ++|-....|... ...+..+.|..+..+.+......|.+|..++-. ....|. ....+..+.|
T Consensus 279 ~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~-~~~~~~~~~W 356 (928)
T PF04762_consen 279 DRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFS-SSESVNFVKW 356 (928)
T ss_pred CCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEcc-CCCCCCceEE
Confidence 34566665 445444455443 456889999877665544445559999887642 111222 2233555999
Q ss_pred CCCCC-EEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--
Q 008467 408 DPTGS-LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-- 484 (564)
Q Consensus 408 ~~~~~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-- 484 (564)
+|... .|...+.+|.+..+++. +.+..++.. .|++.-.+++-. ..++++-.++....
T Consensus 357 dpe~p~~L~v~t~~g~~~~~~~~---------------~~v~~s~~~----~~~D~g~vaVID-G~~lllTpf~~a~VPP 416 (928)
T PF04762_consen 357 DPEKPLRLHVLTSNGQYEIYDFA---------------WDVSRSPGS----SPNDNGTVAVID-GNKLLLTPFRRAVVPP 416 (928)
T ss_pred CCCCCCEEEEEecCCcEEEEEEE---------------EEEEecCCC----CccCceEEEEEe-CCeEEEecccccCCCc
Confidence 99654 36666666776665531 111112111 111222233222 23466655553321
Q ss_pred ---EEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--------EEEEEe-----------cCCCEEEEEEc
Q 008467 485 ---LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK--------IVKTYT-----------GNGGIFEVCWN 542 (564)
Q Consensus 485 ---~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~--------~~~~~~-----------~~~~i~~~~w~ 542 (564)
.+.+. ...+|.+++|++++..+|+-..||.|.+|...... +...+. ....+..++|-
T Consensus 417 PMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (928)
T PF04762_consen 417 PMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWL 495 (928)
T ss_pred hHhceEEc-CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEe
Confidence 23333 34689999999999889999999999999854321 111111 12346789999
Q ss_pred cCCCEEEEEEcC---CcEEEEEe
Q 008467 543 KEGDKIAACFAN---HTVCVLDF 562 (564)
Q Consensus 543 ~~g~~la~~~~~---~~v~v~~~ 562 (564)
.+...++....+ ..+.++++
T Consensus 496 ~~~~~~~~~~~~~~~~~i~~~~~ 518 (928)
T PF04762_consen 496 NDDTLLVLSDSDSNQSKIVLVDI 518 (928)
T ss_pred CCCEEEEEEecCcccceEEEEEe
Confidence 988877776654 45555554
No 261
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.32 E-value=1.9e-09 Score=104.05 Aligned_cols=300 Identities=15% Similarity=0.254 Sum_probs=190.0
Q ss_pred cceEEEEECCCCCEEEEEECCCc---------------EEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeE-E
Q 008467 217 SEVCACAWSPAGSLLASGSGDST---------------ARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT-T 280 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D~~---------------i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~ 280 (564)
..|.-+.|||.+++|.|=+..+. +.+||+.++..... +... ....-.. -
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~s-------------f~~~--~q~~~~Wp~ 136 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFS-------------FNGI--SQPYLGWPV 136 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEee-------------cccc--CCcccccce
Confidence 45788899999999999765443 88888877643211 1111 0111123 5
Q ss_pred EEECCCCCEEEEEeCCCeEEEEECCCceeEeecCC---CCCEEEEEeCCCCCE--EEE-----eeCCCcEEEEECCCcce
Q 008467 281 LDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKH---KGPIFSLKWNKKGDY--LLT-----GSCDKTAIVWDVKTEEW 350 (564)
Q Consensus 281 l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h---~~~V~~l~~~~~~~~--l~s-----~s~D~~v~iwd~~~~~~ 350 (564)
+.|+-+..++|=- ....+.|++..+... ....| ...|....|+|.++. |+. ...++++++|.+..+..
T Consensus 137 ~k~s~~D~y~ARv-v~~sl~i~e~t~n~~-~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~ 214 (561)
T COG5354 137 LKFSIDDKYVARV-VGSSLYIHEITDNIE-EHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV 214 (561)
T ss_pred eeeeecchhhhhh-ccCeEEEEecCCccc-cCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe
Confidence 6788887776644 345788888533221 11111 245777888887543 332 56778999999987776
Q ss_pred eEEEeecccCeEEEEcCCCceEEEE------------eCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe
Q 008467 351 KQQFEFHSGPTLDVDWRNNVSFATS------------STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 418 (564)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s 418 (564)
+.+-.+-...-..+.|.....++.+ -+...++++++... .+....+-.++|...+|+|.++.+++++
T Consensus 215 l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 215 LVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred eeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-ccceeccccccceeeeecccCCceeEEe
Confidence 6655554445556677654332211 12346788887643 3333335578999999999998877665
Q ss_pred --CCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC---CeEEEEeCCCCeEEE-EEeCCC
Q 008467 419 --DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD---STVKLWDVELGKLLY-SLNGHR 492 (564)
Q Consensus 419 --~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~-~~~~h~ 492 (564)
.+-++.++|++.. .+.. ...+.-.++.|+|.+. +++.++.| |.|-+||......+. .+.+-.
T Consensus 294 g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp~~r---------~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n 361 (561)
T COG5354 294 GYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSPHER---------YILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN 361 (561)
T ss_pred cccccceeecccccc-eEEe--cCCcccccccccCccc---------EEEEecCCccccceEEeccCCceEEEEEeecCC
Confidence 6888999998865 3332 2334446677777764 45555554 789999987554443 555432
Q ss_pred CCEEEEEEcCCCCEEEEEe------CCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCC
Q 008467 493 EPVYSLAFSPTGEYLASGS------LDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANH 555 (564)
Q Consensus 493 ~~i~~~~~spdg~~lasgs------~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~ 555 (564)
..-+.|||||+++-+.. .|..|+||++...+.- ..+.+.|.|.|+..-+.+...
T Consensus 362 --~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f-------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 362 --TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF-------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred --ceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh-------hhhhccccCCcccceeeccCC
Confidence 34567999999987653 3788999998654322 466788888887766655543
No 262
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.31 E-value=1.5e-07 Score=93.58 Aligned_cols=258 Identities=13% Similarity=0.236 Sum_probs=160.2
Q ss_pred CCeEEEEECCCCCEEEEEeC----CCeEEEEECCC---cee--EeecCCCCCEEEEEeCCCCCEEEEee-CCCcEEEEEC
Q 008467 276 KDVTTLDWNGEGTLLATGSY----DGQARIWSTNG---DLK--CTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDV 345 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~----dg~i~vw~~~~---~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~ 345 (564)
.....++++|++++|.+... +|.|..|..+. .+. ............++.+|++++|+++. .+|+|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 34567889999999999877 46888887543 332 22322334456789999999988876 5899999999
Q ss_pred CC-cceeEEE--eec-----------ccCeEEEEcCCC--ceEEEEeCCCeEEEEEcCCCc--e--eeEec-CCCcceEE
Q 008467 346 KT-EEWKQQF--EFH-----------SGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENR--P--IKTFA-GHQGEVNC 404 (564)
Q Consensus 346 ~~-~~~~~~~--~~~-----------~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~--~--~~~~~-~h~~~i~~ 404 (564)
.. +.+.... ..+ ......+.+.++ ..|++.-....|+++++.... . ...+. .....-+.
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 76 4433321 111 122455666544 345555566788888887654 1 12222 22345678
Q ss_pred EEECCCCCEEEEEe-CCCcEEEEeCC--CCee--eeeccc----c--cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCe
Q 008467 405 VKWDPTGSLLASCS-DDVTAKIWNMK--QDKY--VHDLRE----H--SKEIYTIRWSPTGSGTNNPNQQLILASASFDST 473 (564)
Q Consensus 405 v~~~~~~~~las~s-~dg~i~iwd~~--~~~~--~~~~~~----~--~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~ 473 (564)
++|+|+++++.... .+++|.++++. .+.. +..+.. . ......|+++|++. .+.++.-..++
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~--------~lyvsnr~~~s 268 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGR--------FLYVSNRGSNS 268 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSS--------EEEEEECTTTE
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCC--------EEEEEeccCCE
Confidence 99999999875554 58889999887 3322 222111 1 12467788888875 45666667889
Q ss_pred EEEEeCC--CCeE--EEEEeCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeC--CCCeEEEEEe--cCCCEEEEEE
Q 008467 474 VKLWDVE--LGKL--LYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSL--KEGKIVKTYT--GNGGIFEVCW 541 (564)
Q Consensus 474 i~iwd~~--~~~~--~~~~~~h~~~i~~~~~spdg~~lasgs-~dg~i~iw~~--~~~~~~~~~~--~~~~i~~~~w 541 (564)
|.+|++. ++++ +..+.........++++|+|++|+++. .++.|.+|++ .+|.+...-. .-....+|.|
T Consensus 269 I~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 269 ISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 9999983 3433 333433334478999999999998877 5678999976 5777654432 2334555555
No 263
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.30 E-value=9e-09 Score=113.16 Aligned_cols=274 Identities=14% Similarity=0.236 Sum_probs=174.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEE----ECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcce
Q 008467 275 SKDVTTLDWNGEGTLLATGSYDGQARIW----STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW 350 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw----~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~ 350 (564)
...|.++.+-++...++.+..+|.|.+. +.+.........-...|.+++||||+..|+....++++.+-+ ++.+.
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~ 153 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDP 153 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceE
Confidence 4679999999999999999999999999 554444444445567899999999999999999999988875 34444
Q ss_pred eEEEeecc-----cCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCce---eeEecCCCcceEEEEECCCCCEEEEEeC--
Q 008467 351 KQQFEFHS-----GPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRP---IKTFAGHQGEVNCVKWDPTGSLLASCSD-- 419 (564)
Q Consensus 351 ~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~---~~~~~~h~~~i~~v~~~~~~~~las~s~-- 419 (564)
+.....+. ...+.+.|-.. ..|=...+...-+- ..+...| ...+. +...-..++|..||.++|+.+-
T Consensus 154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~-~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQ-LRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhh-ccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc
Confidence 43333322 22345555332 12211111000000 0000001 11222 3445567999999999998774
Q ss_pred -C---CcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeC---CCeEEEEeCCCCeEEEEE----
Q 008467 420 -D---VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF---DSTVKLWDVELGKLLYSL---- 488 (564)
Q Consensus 420 -d---g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~---- 488 (564)
. ..+|||+-. +.....-..-.+--.+++|.|.|. ++|+.-. ...|.+|.- +|-.-..+
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~---------lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~ 300 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGN---------LIASSQRLPDRHDVVFFER-NGLRHGEFTLRF 300 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCC---------EEEEEEEcCCCcEEEEEec-CCcEeeeEecCC
Confidence 3 478999854 443332222233345789999886 5666543 345666653 34333222
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEE--ecCCCEEEEEEccCC-CEEEEEEcCCcEEEEEee
Q 008467 489 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK--IVKTY--TGNGGIFEVCWNKEG-DKIAACFANHTVCVLDFR 563 (564)
Q Consensus 489 ~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~--~~~~~--~~~~~i~~~~w~~~g-~~la~~~~~~~v~v~~~~ 563 (564)
......|..+.|++|+..||..-.|. |.+|-..+.. +.+.+ .....+..+.|+|.. ..|.+...+|.+.+++|.
T Consensus 301 ~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 301 DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence 23456799999999999999977666 9999998875 33333 333445569999964 578888787888777764
No 264
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=1.6e-11 Score=133.36 Aligned_cols=201 Identities=17% Similarity=0.336 Sum_probs=154.3
Q ss_pred ccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEE
Q 008467 212 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 291 (564)
Q Consensus 212 l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~ 291 (564)
++.|-..|.++.=||...+-+||+.||.+++|....+. ++.+.+. .+ ...|+.+.|+.+|+.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~----------~v~~~rt-----~g-~s~vtr~~f~~qGnk~~ 2267 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQ----------QVVCFRT-----AG-NSRVTRSRFNHQGNKFG 2267 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCC----------eEEEeec-----cC-cchhhhhhhcccCCcee
Confidence 34445678888889999999999999999999986543 2222222 12 26799999999999999
Q ss_pred EEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEee---CCCcEEEEECCCcceeEEEeecccCeEEEEcCC
Q 008467 292 TGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS---CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 368 (564)
Q Consensus 292 sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 368 (564)
.+..||.+.+|..+.+.....+.|.......+|-. ..+++++ .++.+.+||..-...
T Consensus 2268 i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~------------------ 2327 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPM------------------ 2327 (2439)
T ss_pred eeccCCceeecccCCcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcc------------------
Confidence 99999999999999888788889999888888875 4556553 356788888422100
Q ss_pred CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEE
Q 008467 369 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 448 (564)
Q Consensus 369 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~ 448 (564)
...+. ..|.+.++++++-|..++|+||+.+|.|++||++..+.++.++.
T Consensus 2328 --------------------~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------- 2376 (2439)
T KOG1064|consen 2328 --------------------NSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------- 2376 (2439)
T ss_pred --------------------cceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------
Confidence 01111 56889999999999999999999999999999998887776654
Q ss_pred EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe
Q 008467 449 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN 489 (564)
Q Consensus 449 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 489 (564)
+. .+.++++|+..|.|+||++..-..++++.
T Consensus 2377 ~~----------~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2377 LD----------TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred hh----------hhheeeccCcccceEEEEccccchhhcCc
Confidence 11 12378999999999999998766666553
No 265
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=2.5e-09 Score=106.92 Aligned_cols=223 Identities=18% Similarity=0.362 Sum_probs=152.6
Q ss_pred eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467 210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 289 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 289 (564)
.+|.||...|..+.|+.+...|-|...+|.|.+|-+..+....... .+...+.|.+++|+.||+.
T Consensus 65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMi---------------NnRnKSvV~SmsWn~dG~k 129 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMI---------------NNRNKSVVVSMSWNLDGTK 129 (1189)
T ss_pred hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHh---------------hCcCccEEEEEEEcCCCcE
Confidence 5789999999999999999999999999999999987764321110 1123456899999999999
Q ss_pred EEEEeCCCeEEEEECCCceeE--eecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc---eeEE--------Eee
Q 008467 290 LATGSYDGQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE---WKQQ--------FEF 356 (564)
Q Consensus 290 l~sg~~dg~i~vw~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~---~~~~--------~~~ 356 (564)
+.....||.|.|=.++|.... .+.+. -...+.|++|...++.+-..|.+.++|-+..- +... +..
T Consensus 130 IcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~ 207 (1189)
T KOG2041|consen 130 ICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSN 207 (1189)
T ss_pred EEEEEccCCEEEEeeccceecchhcchh--eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecC
Confidence 999999999988777665332 12221 12367899999999999999999999965321 1000 110
Q ss_pred cccCeEEEEcC---------CCceEEEEeCCCeEEEEEcCC-CceeeEecCCCcceEEEEECCCCCEEEEEeCCC-----
Q 008467 357 HSGPTLDVDWR---------NNVSFATSSTDNMIYVCKIGE-NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV----- 421 (564)
Q Consensus 357 ~~~~~~~~~~~---------~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg----- 421 (564)
....+..+.|. +.-.++.|-..|.+.+..-.+ ..|+..-.| -.+..+.|+++|..||.|+.|.
T Consensus 208 ~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~ 285 (1189)
T KOG2041|consen 208 FPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEP 285 (1189)
T ss_pred CCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCc
Confidence 11123445553 224688888888877665433 334433222 4678899999999999998753
Q ss_pred ----cEEEEeCCCCeeeeecccccccEEEEEEccC
Q 008467 422 ----TAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 452 (564)
Q Consensus 422 ----~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~ 452 (564)
.|.++.. -+..+.+++.....|++++|-..
T Consensus 286 ~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~ 319 (1189)
T KOG2041|consen 286 TDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGT 319 (1189)
T ss_pred cccceEEEecc-chhheEEEecCCceeeeeEEcCC
Confidence 3444432 34556677777788888888543
No 266
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.25 E-value=5.3e-08 Score=98.40 Aligned_cols=293 Identities=14% Similarity=0.134 Sum_probs=175.7
Q ss_pred CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEC-C
Q 008467 227 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-N 305 (564)
Q Consensus 227 ~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~-~ 305 (564)
.+..++.++.++.+.-+|..+|+...... .... .... .. .++..++.++.+|.+..+|. +
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~-----------~~~~--~~~~----p~--v~~~~v~v~~~~g~l~ald~~t 124 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVD-----------LDER--LSGG----VG--ADGGLVFVGTEKGEVIALDAED 124 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeec-----------CCCC--cccc----eE--EcCCEEEEEcCCCEEEEEECCC
Confidence 36678888889999999988775422110 0000 0011 11 24667888889999999997 4
Q ss_pred CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeE-----EEEcCCCceEEEEeCCCe
Q 008467 306 GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL-----DVDWRNNVSFATSSTDNM 380 (564)
Q Consensus 306 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~ 380 (564)
|++....... +.+.+.-.. .+..++.++.++.+..||.++++.+-.+........ .....+ ..++.+..++.
T Consensus 125 G~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~-~~v~~~~~~g~ 201 (377)
T TIGR03300 125 GKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIAD-GGVLVGFAGGK 201 (377)
T ss_pred CcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEEC-CEEEEECCCCE
Confidence 6655443321 222211001 245777888899999999999987665543322110 000112 34556677788
Q ss_pred EEEEEcCCCceeeEecCC-----Cc--c---e-EEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEE
Q 008467 381 IYVCKIGENRPIKTFAGH-----QG--E---V-NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 449 (564)
Q Consensus 381 i~~~~~~~~~~~~~~~~h-----~~--~---i-~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~ 449 (564)
++.++..+++.+-..... .. . + .+..+ .+..++.++.+|.+..||..+++.+...... . ......
T Consensus 202 v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~-~~~p~~ 277 (377)
T TIGR03300 202 LVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS-S-YQGPAV 277 (377)
T ss_pred EEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccC-C-ccCceE
Confidence 888888777654332210 00 0 0 11111 2456777888999999999988766543211 0 001110
Q ss_pred ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 008467 450 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE-PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 528 (564)
Q Consensus 450 ~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~-~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~ 528 (564)
. ++ .+..++.||.|..+|..+|+.+........ ...+... .+..|++++.+|.|+++|..+|+++.
T Consensus 278 --~-------~~--~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 278 --D-------DN--RLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVA 344 (377)
T ss_pred --e-------CC--EEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 0 11 455677899999999999998876632211 1122222 46788999999999999999999998
Q ss_pred EEecCC-CEE-EEEEccCCCEEEEEEcCCcEEEE
Q 008467 529 TYTGNG-GIF-EVCWNKEGDKIAACFANHTVCVL 560 (564)
Q Consensus 529 ~~~~~~-~i~-~~~w~~~g~~la~~~~~~~v~v~ 560 (564)
.+...+ .+. ..+. -++.|.+++.||.|..|
T Consensus 345 ~~~~~~~~~~~sp~~--~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 345 RLKTDGSGIASPPVV--VGDGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEcCCCccccCCEE--ECCEEEEEeCCceEEEe
Confidence 887544 222 2222 23467888889887654
No 267
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.23 E-value=1.5e-08 Score=113.69 Aligned_cols=249 Identities=12% Similarity=0.117 Sum_probs=158.8
Q ss_pred EEEEECCC-CCEEEEEeCCCeEEEEECCCceeEeecC--C------------CCCEEEEEeCCCCCEEEEeeC-CCcEEE
Q 008467 279 TTLDWNGE-GTLLATGSYDGQARIWSTNGDLKCTLSK--H------------KGPIFSLKWNKKGDYLLTGSC-DKTAIV 342 (564)
Q Consensus 279 ~~l~~s~~-g~~l~sg~~dg~i~vw~~~~~~~~~~~~--h------------~~~V~~l~~~~~~~~l~s~s~-D~~v~i 342 (564)
..++++++ +.++++-+.++.|++|+..+.....+.. . -....+++++++++.|+.+.. .+.|++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 45788874 6677777788999999988876544432 1 112477889888887665544 467888
Q ss_pred EECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCc--eeeEecCCCcceEEEEECC-CCCEEEEEeC
Q 008467 343 WDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDP-TGSLLASCSD 419 (564)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~h~~~i~~v~~~~-~~~~las~s~ 419 (564)
+|+.++.. .++.... ..+. +...+. ....+ ..-..++++| ++.++++.+.
T Consensus 651 id~~~~~V-~tlag~G------------------~~g~----~~~gg~~~~~~~l----n~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 651 IDFVNETV-RTLAGNG------------------TKGS----DYQGGKKGTSQVL----NSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred EecCCCEE-EEEeccC------------------cccC----CCCCChhhhHhhc----CCCeEEEEecCCCeEEEEECC
Confidence 88766532 2221100 0000 000000 00000 1234789999 5677788888
Q ss_pred CCcEEEEeCCCCeeeeecccc---------------cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE
Q 008467 420 DVTAKIWNMKQDKYVHDLREH---------------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL 484 (564)
Q Consensus 420 dg~i~iwd~~~~~~~~~~~~~---------------~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 484 (564)
++.|++||..++... .+.+. -.....++++|++. .++++-+.++.|++||+.++..
T Consensus 704 ~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~--------~LYVADs~n~~Irv~D~~tg~~ 774 (1057)
T PLN02919 704 QHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLK--------ELYIADSESSSIRALDLKTGGS 774 (1057)
T ss_pred CCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCC--------EEEEEECCCCeEEEEECCCCcE
Confidence 999999998766432 11111 01224567776653 3556677789999999987653
Q ss_pred EEEEeC-------------C--------CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC----------
Q 008467 485 LYSLNG-------------H--------REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN---------- 533 (564)
Q Consensus 485 ~~~~~~-------------h--------~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~---------- 533 (564)
.....+ + ......++|+++|..+++-+.+++|++||..++.+.......
T Consensus 775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~ 854 (1057)
T PLN02919 775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKAL 854 (1057)
T ss_pred EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccc
Confidence 211100 0 012368999999999999999999999999887765332110
Q ss_pred ----CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 534 ----GGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 534 ----~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
.....++++++|+.+++...|+.|++||++
T Consensus 855 ~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 855 KAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred ccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 135689999999988888899999999975
No 268
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.23 E-value=1.6e-07 Score=91.14 Aligned_cols=239 Identities=13% Similarity=0.123 Sum_probs=144.1
Q ss_pred ECCCCCEEEEEeC----------CCeEEEEECCC-ceeEeecCC-------CCCEEEEEeCCCCCEEEEee-C-CCcEEE
Q 008467 283 WNGEGTLLATGSY----------DGQARIWSTNG-DLKCTLSKH-------KGPIFSLKWNKKGDYLLTGS-C-DKTAIV 342 (564)
Q Consensus 283 ~s~~g~~l~sg~~----------dg~i~vw~~~~-~~~~~~~~h-------~~~V~~l~~~~~~~~l~s~s-~-D~~v~i 342 (564)
.||||+.|.++.. +..|.+||... +....+.-- ...-..++++|+|++|+... . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8999998888766 68999999764 344333321 11223678899999998766 3 689999
Q ss_pred EECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCC-Cce----eeEecCCCcce-EEEEECC-CCCEEE
Q 008467 343 WDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NRP----IKTFAGHQGEV-NCVKWDP-TGSLLA 415 (564)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~----~~~~~~h~~~i-~~v~~~~-~~~~la 415 (564)
.|+.+++.+..+.... ...-+...+.. |..-+.|+......++. ++. ...|.+-...+ ..-.|.+ +|+++.
T Consensus 133 vD~~~~kvv~ei~vp~-~~~vy~t~e~~-~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~ 210 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPD-CYHIFPTANDT-FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVW 210 (352)
T ss_pred EECCCCcEEEEEeCCC-CcEEEEecCCc-cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEE
Confidence 9999999888776532 22222222222 22333444443333222 111 11121111110 0113445 788776
Q ss_pred EEeCCCcEEEEeCCCCee-----eeeccc-------ccccEEEEEEccCCCCCCCCCCcEEEEEEeC--------CCeEE
Q 008467 416 SCSDDVTAKIWNMKQDKY-----VHDLRE-------HSKEIYTIRWSPTGSGTNNPNQQLILASASF--------DSTVK 475 (564)
Q Consensus 416 s~s~dg~i~iwd~~~~~~-----~~~~~~-------~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~--------dg~i~ 475 (564)
...+ |+|.+.|+..... ...+.. ..+...-++++|++. ..+++.-.. .+.|.
T Consensus 211 vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~-------~lyV~~~~~~~~thk~~~~~V~ 282 (352)
T TIGR02658 211 PTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD-------RIYLLADQRAKWTHKTASRFLF 282 (352)
T ss_pred EecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC-------EEEEEecCCccccccCCCCEEE
Confidence 6666 9999999644322 211111 111122255555543 223322111 25899
Q ss_pred EEeCCCCeEEEEEeCCCCCEEEEEEcCCCC-EEEEEe-CCCcEEEEeCCCCeEEEEEec
Q 008467 476 LWDVELGKLLYSLNGHREPVYSLAFSPTGE-YLASGS-LDKSMHIWSLKEGKIVKTYTG 532 (564)
Q Consensus 476 iwd~~~~~~~~~~~~h~~~i~~~~~spdg~-~lasgs-~dg~i~iw~~~~~~~~~~~~~ 532 (564)
++|..+++.+..+.- ...+..|+|||||+ +|.+.. .++.|.++|+.+++.+++...
T Consensus 283 ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~ 340 (352)
T TIGR02658 283 VVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQ 340 (352)
T ss_pred EEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeecc
Confidence 999999999988763 34789999999999 877666 578899999999999998743
No 269
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.22 E-value=6.8e-11 Score=128.71 Aligned_cols=245 Identities=18% Similarity=0.306 Sum_probs=174.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeeccc-CeEEE
Q 008467 286 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-PTLDV 364 (564)
Q Consensus 286 ~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-~~~~~ 364 (564)
.++.+.....++...-|...+.-. .+..+-..|.++.-+|...+-+||+.||.|++|....+..+-.+..... .+..+
T Consensus 2179 ~s~~~~~~n~~~~~~tq~~~~~~~-~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~ 2257 (2439)
T KOG1064|consen 2179 FSNRFTPSNLPWLGSTQTSRGASV-MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRS 2257 (2439)
T ss_pred ccccCCcccCCccccceeccccee-EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhh
Confidence 344555555566666666544322 2344556788888899999999999999999998777665555543322 22222
Q ss_pred Ec-CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe---CCCcEEEEeCCC---Ceeeeec
Q 008467 365 DW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS---DDVTAKIWNMKQ---DKYVHDL 437 (564)
Q Consensus 365 ~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s---~dg~i~iwd~~~---~~~~~~~ 437 (564)
.+ .....|..+..||.+.+|... .+|......|....+.+.|-. .++++++ +++.+.+||..- ..+++
T Consensus 2258 ~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-- 2332 (2439)
T KOG1064|consen 2258 RFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-- 2332 (2439)
T ss_pred hhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--
Confidence 33 355678889999999999987 677888888988888777754 6677754 478899999642 22344
Q ss_pred ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008467 438 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMH 517 (564)
Q Consensus 438 ~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~ 517 (564)
..|.+..+++++.|... +|+||+.+|.|++||++..++++++.. +. ...++++|+..|.|+
T Consensus 2333 ~~H~~gaT~l~~~P~~q---------llisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ik 2393 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQ---------LLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIK 2393 (2439)
T ss_pred eecCCCceEEEEcCcce---------EEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceE
Confidence 68999999999999754 789999999999999998777655543 33 567899999999999
Q ss_pred EEeCCCCeEEEEEecC---CCEE---EEEEc-cCCCEEEEEEcCC
Q 008467 518 IWSLKEGKIVKTYTGN---GGIF---EVCWN-KEGDKIAACFANH 555 (564)
Q Consensus 518 iw~~~~~~~~~~~~~~---~~i~---~~~w~-~~g~~la~~~~~~ 555 (564)
||++..-.+++++... ++++ ....+ -..++|.+|..||
T Consensus 2394 Iw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~ 2438 (2439)
T KOG1064|consen 2394 IWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSCGADG 2438 (2439)
T ss_pred EEEccccchhhcCchhhcccchhhhcCceeeeccCceEEEecCCC
Confidence 9999988888887643 2221 11111 1245777777765
No 270
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.20 E-value=6e-10 Score=100.80 Aligned_cols=267 Identities=21% Similarity=0.421 Sum_probs=168.2
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc------eeEeecCCC------------CCEEEEEeCCCC--CEEEEe
Q 008467 275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD------LKCTLSKHK------------GPIFSLKWNKKG--DYLLTG 334 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~------~~~~~~~h~------------~~V~~l~~~~~~--~~l~s~ 334 (564)
...|+++.|...|.++++|...|.|.++..+.. ....+++|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 356999999999999999999999999975432 223355664 357788887655 457777
Q ss_pred eCCCcEEEEECCCcceeEE--------Eeec-ccCeEEEEcCCCceEEE-EeCCCeEEEEEcCCCceeeEe-cCCCcceE
Q 008467 335 SCDKTAIVWDVKTEEWKQQ--------FEFH-SGPTLDVDWRNNVSFAT-SSTDNMIYVCKIGENRPIKTF-AGHQGEVN 403 (564)
Q Consensus 335 s~D~~v~iwd~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~-~~~d~~i~~~~~~~~~~~~~~-~~h~~~i~ 403 (564)
+.|++|++|-+....+.-. +... .+++....- ..+-- +.-|..|. .+|.+.+ ..|.-.|+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~---l~lprls~hd~iia------a~p~rvyaNaH~yhiN 176 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKE---LLLPRLSEHDEIIA------AKPCRVYANAHPYHIN 176 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHH---hhcccccccceEEE------eccceeccccceeEee
Confidence 8999999998865432211 1100 111111000 00000 00011111 1234444 56888999
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCC---eeeeeccccc-----ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE
Q 008467 404 CVKWDPTGSLLASCSDDVTAKIWNMKQD---KYVHDLREHS-----KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK 475 (564)
Q Consensus 404 ~v~~~~~~~~las~s~dg~i~iwd~~~~---~~~~~~~~~~-----~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~ 475 (564)
++.++.|...++++ +|=.|.+|++.-. -.+..++.|. ..|++..|+|... .++.-.+..|+|+
T Consensus 177 SiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c--------n~fmYSsSkG~Ik 247 (460)
T COG5170 177 SISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC--------NVFMYSSSKGEIK 247 (460)
T ss_pred eeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc--------ceEEEecCCCcEE
Confidence 99999998877654 6778999987532 1233444443 3466777777543 3566677789999
Q ss_pred EEeCCCCeE------EEEE--e--------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEec------
Q 008467 476 LWDVELGKL------LYSL--N--------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK-IVKTYTG------ 532 (564)
Q Consensus 476 iwd~~~~~~------~~~~--~--------~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~-~~~~~~~------ 532 (564)
+-|++...+ ++.. . +-...|..+.|+++|+||++-+. -+|+|||++..+ ++++...
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~ 326 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMD 326 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHH
Confidence 999984221 1111 1 11246888999999999987664 479999997653 5666532
Q ss_pred -------CCCE---EEEEEccCCCEEEEEEcCCcEEEE
Q 008467 533 -------NGGI---FEVCWNKEGDKIAACFANHTVCVL 560 (564)
Q Consensus 533 -------~~~i---~~~~w~~~g~~la~~~~~~~v~v~ 560 (564)
+.+| +.+.|+.|.+.+.+|+-+...-+|
T Consensus 327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred HHHhhhhccceeeeEEEEecCCcccccccccccceeee
Confidence 2345 468999999888888766555444
No 271
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.20 E-value=2.3e-09 Score=96.57 Aligned_cols=249 Identities=19% Similarity=0.270 Sum_probs=158.8
Q ss_pred ccceEEEEECC---CCC-EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEE
Q 008467 216 TSEVCACAWSP---AGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 291 (564)
Q Consensus 216 ~~~V~~~~~sp---~~~-~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~ 291 (564)
++.++.+.|.- +|. .|+-+-.+|.|.++....... ...++....... ....-.++.|++.+..++
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~s----------s~~L~~ls~~ki-~~~~~lslD~~~~~~~i~ 137 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDES----------SVHLRGLSSKKI-SVVEALSLDISTSGTKIF 137 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeecccee----------eeeecccchhhh-hheeeeEEEeeccCceEE
Confidence 34566777764 344 556666778888887543211 011111111000 001246789999999999
Q ss_pred EEeCCCeEEEEE-CCCceeE--eecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCC-cceeEEEeecccCeEEEEc
Q 008467 292 TGSYDGQARIWS-TNGDLKC--TLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKT-EEWKQQFEFHSGPTLDVDW 366 (564)
Q Consensus 292 sg~~dg~i~vw~-~~~~~~~--~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~ 366 (564)
++..+|.+.+-+ ....+.. ....|.-+.+..+|+... +.+++|+.|+.+..||++. ++++
T Consensus 138 vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i--------------- 202 (339)
T KOG0280|consen 138 VSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI--------------- 202 (339)
T ss_pred EEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee---------------
Confidence 999999998544 3344443 678999999999998654 5788999999999999982 2211
Q ss_pred CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEEEeCCCcEEEEeCCC-CeeeeecccccccE
Q 008467 367 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQ-DKYVHDLREHSKEI 444 (564)
Q Consensus 367 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las~s~dg~i~iwd~~~-~~~~~~~~~~~~~i 444 (564)
|. .-+-|...|.+|.-+| .+.+|+||+.|-.|++||.++ ++++..- .-.+.|
T Consensus 203 -----------------~~--------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGV 256 (339)
T KOG0280|consen 203 -----------------WH--------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGV 256 (339)
T ss_pred -----------------ee--------cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccce
Confidence 10 0123667788888775 467899999999999999984 4554432 234789
Q ss_pred EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--e---EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCCcEE-
Q 008467 445 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--K---LLYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMH- 517 (564)
Q Consensus 445 ~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--~---~~~~~~~h~~~i~~~~~spdg~~lasgs-~dg~i~- 517 (564)
+.+.++|... ..+|+++ +-.-.+|-+...+ + .....+.|.+-++.-.|.....+|||++ .|+.|+
T Consensus 257 WRi~~~p~~~-------~~lL~~C-Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~ 328 (339)
T KOG0280|consen 257 WRIKHHPEIF-------HRLLAAC-MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQ 328 (339)
T ss_pred EEEEecchhh-------hHHHHHH-HhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceee
Confidence 9999998653 1234444 4344666666543 2 3344566766666666754456799876 366644
Q ss_pred EEeCCCC
Q 008467 518 IWSLKEG 524 (564)
Q Consensus 518 iw~~~~~ 524 (564)
+|-.-++
T Consensus 329 ~Wl~~t~ 335 (339)
T KOG0280|consen 329 LWLHITG 335 (339)
T ss_pred eeeeccC
Confidence 6654433
No 272
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=5.2e-11 Score=115.26 Aligned_cols=182 Identities=20% Similarity=0.351 Sum_probs=131.5
Q ss_pred eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCC
Q 008467 309 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 388 (564)
Q Consensus 309 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 388 (564)
.+.+.+|+..|..+.--.+.+-+++++.|++|++|.++... | .+++
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~Eg----------------------------D------~~~t 773 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEG----------------------------D------EIGT 773 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEecccc----------------------------C------cccc
Confidence 45678899998888777778889999999999999886531 0 0111
Q ss_pred CceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccc--ccccEEEEEEccCCCCCCCCCCcEEEE
Q 008467 389 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILA 466 (564)
Q Consensus 389 ~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~--~~~~i~~i~~~p~~~~~~~~~~~~~l~ 466 (564)
..+..++..|..+|..+.|-.+-+.+++| ||.|++||.--++++..+.. ..+.+..+..-|. -+...+++
T Consensus 774 saCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n------v~~~iliA 845 (1034)
T KOG4190|consen 774 SACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN------VDRHILIA 845 (1034)
T ss_pred ceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEeccc------Ccchheee
Confidence 23445678899999999998888887765 89999999876665543321 1112222222222 12234566
Q ss_pred EEeCCCeEEEEeCCCCeEEEEEeC-----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec
Q 008467 467 SASFDSTVKLWDVELGKLLYSLNG-----HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG 532 (564)
Q Consensus 467 s~s~dg~i~iwd~~~~~~~~~~~~-----h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~ 532 (564)
.|+...+|+++|.+.+.-...++- -..-+.+++..|.|+++|+|=..|.|.+.|.++|+++..|..
T Consensus 846 gcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 846 GCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP 916 (1034)
T ss_pred eccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence 668899999999998765544432 234578999999999999999999999999999999887764
No 273
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.14 E-value=8.3e-07 Score=86.24 Aligned_cols=245 Identities=11% Similarity=0.069 Sum_probs=142.0
Q ss_pred CeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeC----------CCcEEEEECCCcceeEEEeecccCe----
Q 008467 297 GQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSC----------DKTAIVWDVKTEEWKQQFEFHSGPT---- 361 (564)
Q Consensus 297 g~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~----------D~~v~iwd~~~~~~~~~~~~~~~~~---- 361 (564)
+.|.+.|... +.+..+..-..|-. + ++|+|+.|+.+.. +..|.+||+.+.+.+..+.....|-
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 7888888754 34444543333432 4 8999999887766 6899999999999888776532211
Q ss_pred ---EEEEcCCC--ceEEEE-eCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe--------CCCcEEEEe
Q 008467 362 ---LDVDWRNN--VSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--------DDVTAKIWN 427 (564)
Q Consensus 362 ---~~~~~~~~--~~~~~~-~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s--------~dg~i~iwd 427 (564)
..+...++ ..|+.- +.++.+.+.|+...+.+..+.- |++..++..+ -||......
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-----------p~~~~vy~t~e~~~~~~~~Dg~~~~v~ 173 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-----------PDCYHIFPTANDTFFMHCRDGSLAKVG 173 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-----------CCCcEEEEecCCccEEEeecCceEEEE
Confidence 12223333 233333 2367777888877776655432 3333333322 233322222
Q ss_pred CCCCeeee--ecc-ccc--ccEEEE-EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-----eEEEEEeC------
Q 008467 428 MKQDKYVH--DLR-EHS--KEIYTI-RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-----KLLYSLNG------ 490 (564)
Q Consensus 428 ~~~~~~~~--~~~-~~~--~~i~~i-~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~------ 490 (564)
+....... ... .+. .++..- .+.+ .++..+++|. .|+|.+.|+... .....+..
T Consensus 174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~-------~dg~~~~vs~--eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~ 244 (352)
T TIGR02658 174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSN-------KSGRLVWPTY--TGKIFQIDLSSGDAKFLPAIEAFTEAEKADG 244 (352)
T ss_pred ecCCCceEEeeeeeecCCccccccCCceEc-------CCCcEEEEec--CCeEEEEecCCCcceecceeeeccccccccc
Confidence 11111000 000 000 000000 1122 1233344443 399999996432 22222211
Q ss_pred -CCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCC-EEEEEE-cCCcE
Q 008467 491 -HREPVYSLAFSPTGEYLASGSL----------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD-KIAACF-ANHTV 557 (564)
Q Consensus 491 -h~~~i~~~~~spdg~~lasgs~----------dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~-~la~~~-~~~~v 557 (564)
....+.-++++|+|+.+..+.. .+.|.++|..+++.+..+.....+..++++|||+ +|.+.. .++.|
T Consensus 245 wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~V 324 (352)
T TIGR02658 245 WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTL 324 (352)
T ss_pred cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcE
Confidence 1123345999999988877431 2579999999999999988878899999999999 777665 57789
Q ss_pred EEEEee
Q 008467 558 CVLDFR 563 (564)
Q Consensus 558 ~v~~~~ 563 (564)
.|+|..
T Consensus 325 sViD~~ 330 (352)
T TIGR02658 325 YIFDAE 330 (352)
T ss_pred EEEECc
Confidence 999974
No 274
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=99.13 E-value=6.8e-12 Score=71.55 Aligned_cols=27 Identities=44% Similarity=0.642 Sum_probs=24.7
Q ss_pred cchhhhhHHHHHhcCCceeeecccccc
Q 008467 7 EELNYLVFRYLQESGLLHSAFVLGYEA 33 (564)
Q Consensus 7 ~evn~Li~ryl~E~g~~~sa~~~~~E~ 33 (564)
++||+|||+||+++||.+||.+|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999986
No 275
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.10 E-value=1.7e-07 Score=105.20 Aligned_cols=266 Identities=11% Similarity=0.107 Sum_probs=157.5
Q ss_pred EEEEECCC-CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccc-cccCCCCeEEEEECCCCCEEEEEe-CC
Q 008467 220 CACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR-TNEKSKDVTTLDWNGEGTLLATGS-YD 296 (564)
Q Consensus 220 ~~~~~sp~-~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~V~~l~~s~~g~~l~sg~-~d 296 (564)
..+++++. +.++++-+..+.|++||............+.... ..+. ....-..-..++++++++.|.++. .+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~-----~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n 645 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGL-----RDGSFEDATFNRPQGLAYNAKKNLLYVADTEN 645 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCC-----CCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence 35788875 6677887888999999975321100000000000 0000 001112356789999888666554 45
Q ss_pred CeEEEEECCCceeEeecCC-----------------CCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCcceeEEEeecc
Q 008467 297 GQARIWSTNGDLKCTLSKH-----------------KGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 358 (564)
Q Consensus 297 g~i~vw~~~~~~~~~~~~h-----------------~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 358 (564)
+.|++++..+....++.+- -..-+.++++| ++..+++.+.+++|++||..++... .+.
T Consensus 646 ~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~--- 721 (1057)
T PLN02919 646 HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFS--- 721 (1057)
T ss_pred ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEe---
Confidence 7899998766555444221 01235789999 4556677778899999998765432 111
Q ss_pred cCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeeeeec
Q 008467 359 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDL 437 (564)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~las~s~dg~i~iwd~~~~~~~~~~ 437 (564)
.++..... ..... ....-.....++++|+++ ++++-+.++.|++||+.++......
T Consensus 722 ------------------G~G~~~~~--~g~~~---~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~ 778 (1057)
T PLN02919 722 ------------------GDGYERNL--NGSSG---TSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA 778 (1057)
T ss_pred ------------------cCCccccC--CCCcc---ccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence 01100000 00000 000112356799999998 5566677899999998865432110
Q ss_pred cc-------------cc--------ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe-------
Q 008467 438 RE-------------HS--------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN------- 489 (564)
Q Consensus 438 ~~-------------~~--------~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------- 489 (564)
.+ .. ..-..++++++|. ++++-+.++.|++||..++.......
T Consensus 779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~---------LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~ 849 (1057)
T PLN02919 779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ---------IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFK 849 (1057)
T ss_pred ecccccCcccccccCCCCchhhhhccCCceeeEeCCCc---------EEEEECCCCEEEEEECCCCeEEEEeccCCcCCC
Confidence 00 00 0113455555542 56677889999999998776543221
Q ss_pred ------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 008467 490 ------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 526 (564)
Q Consensus 490 ------~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~ 526 (564)
+.-.....|+++++|+.+++-+.+++|++||+.+++.
T Consensus 850 dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 850 DGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 1112467899999999999989999999999998865
No 276
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=1.5e-07 Score=95.34 Aligned_cols=201 Identities=13% Similarity=0.075 Sum_probs=121.0
Q ss_pred eEEEEECCCceeEeecCCCCCEEEEEeCCCCCE-EEEeeCC---CcEEEEECCCcceeEEEeecccCeEEEEcCCCceEE
Q 008467 298 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 373 (564)
Q Consensus 298 ~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (564)
.|.+-|.+|.....+.... .+...+|+|+|+. ++..+.+ ..|.++|+.+++....
T Consensus 170 ~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l-------------------- 228 (419)
T PRK04043 170 NIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI-------------------- 228 (419)
T ss_pred eEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE--------------------
Confidence 4445456665444444343 7888999999985 5544433 3466667766542211
Q ss_pred EEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEE-EEeCC--CcEEEEeCCCCeeeeecccccccEEEEEEc
Q 008467 374 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDD--VTAKIWNMKQDKYVHDLREHSKEIYTIRWS 450 (564)
Q Consensus 374 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~la-s~s~d--g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~ 450 (564)
....+......|+|||+.|+ +.+.+ ..|.++|+.++.. ..+..+........|+
T Consensus 229 ----------------------t~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~S 285 (419)
T PRK04043 229 ----------------------ASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFV 285 (419)
T ss_pred ----------------------ecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEEC
Confidence 11223344577999998665 44444 4566778776653 3344343333456799
Q ss_pred cCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC---------CcEEEE
Q 008467 451 PTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---------KSMHIW 519 (564)
Q Consensus 451 p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d---------g~i~iw 519 (564)
|+|. .++++....+ .|.++|+..++...... ... ....|||||++||..+.. ..|.+.
T Consensus 286 PDG~--------~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~ 354 (419)
T PRK04043 286 EDDK--------RIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLI 354 (419)
T ss_pred CCCC--------EEEEEECCCCCceEEEEECCCCCeEeCcc-CCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEE
Confidence 9885 2444443333 67888888776532221 111 224899999999866543 368888
Q ss_pred eCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcC
Q 008467 520 SLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN 554 (564)
Q Consensus 520 ~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~ 554 (564)
++.++.... +...+.....+|+|||+.|+.....
T Consensus 355 d~~~g~~~~-LT~~~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 355 STNSDYIRR-LTANGVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred ECCCCCeEE-CCCCCCcCCeEECCCCCEEEEEEcc
Confidence 888876533 3333333468999999998877543
No 277
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.07 E-value=3.2e-07 Score=83.18 Aligned_cols=246 Identities=17% Similarity=0.229 Sum_probs=125.1
Q ss_pred EEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 008467 222 CAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARI 301 (564)
Q Consensus 222 ~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~v 301 (564)
++.+++|++||.- .|..|.|=...+.- .. ....+... ......=.-++||||+.+||.+...|+|++
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf----------~s-i~~kcqVp-kD~~PQWRkl~WSpD~tlLa~a~S~G~i~v 69 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDF----------SS-IIGKCQVP-KDPNPQWRKLAWSPDCTLLAYAESTGTIRV 69 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCc----------hh-eeEEEecC-CCCCchheEEEECCCCcEEEEEcCCCeEEE
Confidence 4567889888864 56666664332210 00 01111111 111223467899999999999999999999
Q ss_pred EECCCceeEeecCC-------CCCEEEEEeCCCC------CEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC
Q 008467 302 WSTNGDLKCTLSKH-------KGPIFSLKWNKKG------DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 368 (564)
Q Consensus 302 w~~~~~~~~~~~~h-------~~~V~~l~~~~~~------~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 368 (564)
+|..|.....+..- ..+|.++.|.+-. ..|+....+|.++-|-+..
T Consensus 70 fdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~--------------------- 128 (282)
T PF15492_consen 70 FDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSV--------------------- 128 (282)
T ss_pred EecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEc---------------------
Confidence 99887655544331 1234444443211 0122222222222221100
Q ss_pred CceEEEEeCCCeEEEEEcCCCceeeEecC-CCcceEEEEECCCCCEEEEEeCCCc-EEEEeCCCCeeeeecccccccEEE
Q 008467 369 NVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDDVT-AKIWNMKQDKYVHDLREHSKEIYT 446 (564)
Q Consensus 369 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~i~~v~~~~~~~~las~s~dg~-i~iwd~~~~~~~~~~~~~~~~i~~ 446 (564)
+...+.... ....|.. +...|+++.|+|..++|+.|+.... -..+. +....++
T Consensus 129 ------gt~q~y~e~-------hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~-----------a~~~GLt- 183 (282)
T PF15492_consen 129 ------GTNQGYQEN-------HSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK-----------ASSCGLT- 183 (282)
T ss_pred ------ccCCcceee-------EEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc-----------ccccCce-
Confidence 000111000 0112222 3567999999999998877765322 00000 0111111
Q ss_pred EEEccCCCCCCCCCCcEEEEEEeCCCe------EEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467 447 IRWSPTGSGTNNPNQQLILASASFDST------VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 520 (564)
Q Consensus 447 i~~~p~~~~~~~~~~~~~l~s~s~dg~------i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~ 520 (564)
+|..-.. .| .+..++...|+. -.+|.+-+.+...........|..|+.||||+.||+...+|.|.+|+
T Consensus 184 -aWRiL~~---~P--yyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 184 -AWRILSD---SP--YYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWE 257 (282)
T ss_pred -EEEEcCC---CC--cEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence 1211110 00 011222222221 12333332222111122356799999999999999999999999999
Q ss_pred CCCCeEEEEEec
Q 008467 521 LKEGKIVKTYTG 532 (564)
Q Consensus 521 ~~~~~~~~~~~~ 532 (564)
+..-++.+.+.-
T Consensus 258 iPsL~~~~~W~~ 269 (282)
T PF15492_consen 258 IPSLRLQRSWKQ 269 (282)
T ss_pred cCcchhhcccch
Confidence 998777776643
No 278
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=8.4e-09 Score=98.09 Aligned_cols=267 Identities=16% Similarity=0.273 Sum_probs=185.2
Q ss_pred ECCCCCEEEEEeCCCeEEEEECCC----ceeEeecCCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECCCcceeEEEeec
Q 008467 283 WNGEGTLLATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFH 357 (564)
Q Consensus 283 ~s~~g~~l~sg~~dg~i~vw~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~ 357 (564)
+-...+++.+++.||.++.|.... .....+..|.+.|.+++.+.++..+.|++. |..++++|+..-..+.-+...
T Consensus 16 ~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~ 95 (558)
T KOG0882|consen 16 FPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLV 95 (558)
T ss_pred eeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccc
Confidence 344568999999999999998654 233456778899999999999999999776 999999998765544322221
Q ss_pred ccCeEEEEcCC--C---ceE-EEEeCCCeEEEEEcCCCc-eeeEe-cCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008467 358 SGPTLDVDWRN--N---VSF-ATSSTDNMIYVCKIGENR-PIKTF-AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 429 (564)
Q Consensus 358 ~~~~~~~~~~~--~---~~~-~~~~~d~~i~~~~~~~~~-~~~~~-~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~ 429 (564)
.-| -.++|.. . ..+ ++.-.++.+.++|-.... +...+ .-|..+|.++.+++.+..++|....|.|.-|...
T Consensus 96 ~lP-g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e 174 (558)
T KOG0882|consen 96 DLP-GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAE 174 (558)
T ss_pred cCC-CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCC
Confidence 111 1223322 1 123 333457788888865443 33333 3588999999999999999999999999999876
Q ss_pred C------Ceeee---------ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe-----
Q 008467 430 Q------DKYVH---------DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN----- 489 (564)
Q Consensus 430 ~------~~~~~---------~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----- 489 (564)
. .+... .+........++.|+|++. .+.+-+.|..|++++..+|+++..+.
T Consensus 175 ~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~---------qistl~~DrkVR~F~~KtGklvqeiDE~~t~ 245 (558)
T KOG0882|consen 175 GPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA---------QISTLNPDRKVRGFVFKTGKLVQEIDEVLTD 245 (558)
T ss_pred CcccCccccccccccccchhhcccccccCccceEEccccC---------cccccCcccEEEEEEeccchhhhhhhccchh
Confidence 3 11111 1122334567889999886 46677789999999999887654332
Q ss_pred ---------------------------CCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCE-----
Q 008467 490 ---------------------------GHR-EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI----- 536 (564)
Q Consensus 490 ---------------------------~h~-~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i----- 536 (564)
.|. ..-+.+.|...|++|.-|+.=| |++.++.++.+++.+-....|
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~ 324 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRL 324 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhH
Confidence 111 2345688999999999988877 999999999988776311000
Q ss_pred ---------------------EEEEEccCCCEEEEEEcCCcEEEE
Q 008467 537 ---------------------FEVCWNKEGDKIAACFANHTVCVL 560 (564)
Q Consensus 537 ---------------------~~~~w~~~g~~la~~~~~~~v~v~ 560 (564)
..+.+.+|-..+++++...+..++
T Consensus 325 sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 325 SLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred HHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 124477788888888877666655
No 279
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.04 E-value=2.6e-06 Score=79.80 Aligned_cols=258 Identities=15% Similarity=0.212 Sum_probs=162.0
Q ss_pred CCeEEEEECCC---ce-eEeecCCCCCEEEEEeCCCCCEEEEeeCC---CcEEEEECC--Cccee--EEEeecccCeEEE
Q 008467 296 DGQARIWSTNG---DL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVK--TEEWK--QQFEFHSGPTLDV 364 (564)
Q Consensus 296 dg~i~vw~~~~---~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~--~~~~~--~~~~~~~~~~~~~ 364 (564)
+..|.+|+++. .+ ...+..+.+.++-|+|+|++++|+++..+ |.|..|.+. .|.+. ........+..-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 46789998652 22 12334566777889999999999988765 566666544 35432 2222222232333
Q ss_pred EcC--CCceEEEEeCCCeEEEEEcCCCce---eeEecCCCcc----------eEEEEECCCCCEEEEEeC-CCcEEEEeC
Q 008467 365 DWR--NNVSFATSSTDNMIYVCKIGENRP---IKTFAGHQGE----------VNCVKWDPTGSLLASCSD-DVTAKIWNM 428 (564)
Q Consensus 365 ~~~--~~~~~~~~~~d~~i~~~~~~~~~~---~~~~~~h~~~----------i~~v~~~~~~~~las~s~-dg~i~iwd~ 428 (564)
+.. ....|.+.-..+.|.++.++.... ......|.+. +-+..+.|++++|+++.- --.|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 333 334455555678899998865321 2122234443 778999999999988764 336899999
Q ss_pred CCCeeee----ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEEeC---------CCCC
Q 008467 429 KQDKYVH----DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNG---------HREP 494 (564)
Q Consensus 429 ~~~~~~~----~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~---------h~~~ 494 (564)
..+.... .+ .....-.-|.|+|++. ..-+.+=.+++|-+|..... ..+..+.. ....
T Consensus 175 ~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k--------~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 175 DDGKLTPADPAEV-KPGAGPRHIVFHPNGK--------YAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred ccCcccccccccc-CCCCCcceEEEcCCCc--------EEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCc
Confidence 8665421 12 2233346788888775 34445667899999998763 22222221 1234
Q ss_pred EEEEEEcCCCCEEEEEeC-CCcEEEEeCCC--CeE--EEEEecCCC-EEEEEEccCCCEEEEEEcCC-cEEEEEe
Q 008467 495 VYSLAFSPTGEYLASGSL-DKSMHIWSLKE--GKI--VKTYTGNGG-IFEVCWNKEGDKIAACFANH-TVCVLDF 562 (564)
Q Consensus 495 i~~~~~spdg~~lasgs~-dg~i~iw~~~~--~~~--~~~~~~~~~-i~~~~w~~~g~~la~~~~~~-~v~v~~~ 562 (564)
.-.|..+|||+||.++.. ...|-+|.+.. |++ +......+. ..++.++++|++|+++..++ .+.||-.
T Consensus 246 ~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 246 AAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFER 320 (346)
T ss_pred eeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence 678899999999988753 34788888753 332 233333333 67899999999999887654 5677654
No 280
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.03 E-value=2.5e-07 Score=93.47 Aligned_cols=259 Identities=10% Similarity=0.056 Sum_probs=157.6
Q ss_pred CCEEEEEeCCCeEEEEEC-CCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEE
Q 008467 287 GTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 365 (564)
Q Consensus 287 g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (564)
+..+++++.+|.+..+|. +|+......-......+.. .++..++.++.++.+..+|..+++.+-....... +....
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE-VLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCce-eecCC
Confidence 567888888999999995 5665544332221111121 2467888899999999999999987655443221 11110
Q ss_pred cCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcce-----EEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc
Q 008467 366 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV-----NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 440 (564)
Q Consensus 366 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i-----~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~ 440 (564)
-..+..++.+..++.++.++..+++.+-.+......+ .+.... +..++.++.++.+..+|..+++.+......
T Consensus 142 ~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~ 219 (377)
T TIGR03300 142 LVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVA 219 (377)
T ss_pred EEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccc
Confidence 1123455566778999999998877665544322111 111111 246778888999999999888765432211
Q ss_pred cc----cE---EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC
Q 008467 441 SK----EI---YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 513 (564)
Q Consensus 441 ~~----~i---~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d 513 (564)
.. .+ ..+.-+|. . .+. .+..++.+|.+..||..+|+.++..... . .... ..++..++.++.|
T Consensus 220 ~~~g~~~~~~~~~~~~~p~-----~-~~~-~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~-~~~p--~~~~~~vyv~~~~ 288 (377)
T TIGR03300 220 LPKGRTELERLVDVDGDPV-----V-DGG-QVYAVSYQGRVAALDLRSGRVLWKRDAS-S-YQGP--AVDDNRLYVTDAD 288 (377)
T ss_pred cCCCCCchhhhhccCCccE-----E-ECC-EEEEEEcCCEEEEEECCCCcEEEeeccC-C-ccCc--eEeCCEEEEECCC
Confidence 00 00 00000010 0 011 4556778999999999999988776521 1 1122 2356778888899
Q ss_pred CcEEEEeCCCCeEEEEEec-CCC-EEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 514 KSMHIWSLKEGKIVKTYTG-NGG-IFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 514 g~i~iw~~~~~~~~~~~~~-~~~-i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
|.|..+|..+|+.+..+.. ... ...... .|.+|.++..+|.+.++|.+
T Consensus 289 G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 289 GVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred CeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECC
Confidence 9999999999998876532 111 122222 46788888899999888753
No 281
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.01 E-value=4.6e-07 Score=96.74 Aligned_cols=273 Identities=11% Similarity=0.216 Sum_probs=155.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEe
Q 008467 276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE 355 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 355 (564)
..|.++.|-.+++.++.+...|.|.+-|...........-.+.|.+++|+|++..++..+.++++.+-+- +-..+....
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhccc
Confidence 5799999999999999999999999998776655555566788999999999999998888888776431 111111000
Q ss_pred e-----cccCeEEEEcCCCceEEEEeCCCeEEEEE-cCCCceeeEecCCCcceEEEEECCCCCEEEEE-----eCCCcEE
Q 008467 356 F-----HSGPTLDVDWRNNVSFATSSTDNMIYVCK-IGENRPIKTFAGHQGEVNCVKWDPTGSLLASC-----SDDVTAK 424 (564)
Q Consensus 356 ~-----~~~~~~~~~~~~~~~~~~~~~d~~i~~~~-~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~-----s~dg~i~ 424 (564)
. ..+....+.|.....-.-++... ..-.. +...+......-|. .=++|.|--||.++|+. .....|+
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr-~~~~~~~~~ek~~~~~~~~~-~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGR-QAARQKIEKEKALEQIEQDD-HKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccceecccccceeeecchhh-hcccccccccccccchhhcc-CCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 0 11122333342211111110000 00000 00000000000122 22468999999999883 3337999
Q ss_pred EEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEE---eCCCeEEEEeCC---CCeEEEEEeCCCCCEEEE
Q 008467 425 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA---SFDSTVKLWDVE---LGKLLYSLNGHREPVYSL 498 (564)
Q Consensus 425 iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~---s~dg~i~iwd~~---~~~~~~~~~~h~~~i~~~ 498 (564)
+||.. +..-..-..-.+.-.++.|-|.|. ++++- ..|+.|.+|.-. -|.....+.....+|..+
T Consensus 226 V~drE-g~Lns~se~~~~l~~~LsWkPsgs---------~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L 295 (1265)
T KOG1920|consen 226 VYDRE-GALNSTSEPVEGLQHSLSWKPSGS---------LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEEL 295 (1265)
T ss_pred Eeccc-chhhcccCcccccccceeecCCCC---------eEeeeeecCCCCcEEEEecCCccccccccCCcccccchhee
Confidence 99966 322111111223346789999876 44442 345678888632 122222222233458999
Q ss_pred EEcCCCCEEEE---EeCCCcEEEEeCCCCe--EEEEEecCCCEEEEEEccCCC-EEEEEEcCCcEEEEEe
Q 008467 499 AFSPTGEYLAS---GSLDKSMHIWSLKEGK--IVKTYTGNGGIFEVCWNKEGD-KIAACFANHTVCVLDF 562 (564)
Q Consensus 499 ~~spdg~~las---gs~dg~i~iw~~~~~~--~~~~~~~~~~i~~~~w~~~g~-~la~~~~~~~v~v~~~ 562 (564)
+|+.++..||+ ......|++|-+.+.. +.+.+.-..... +.|+|.-. .|.+-..+|...|+||
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~-~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL-LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred eecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc-ccccCCCceeEEEEecCCcEEEEEE
Confidence 99999999997 4445569999998764 223333222222 77887432 2222225666666665
No 282
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.98 E-value=6.9e-06 Score=77.00 Aligned_cols=252 Identities=15% Similarity=0.266 Sum_probs=156.9
Q ss_pred CccceEEEEECCCCCEEEEEECC---CcEEEEeCCC--CCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467 215 HTSEVCACAWSPAGSLLASGSGD---STARIWTIAD--GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 289 (564)
Q Consensus 215 h~~~V~~~~~sp~~~~lasgs~D---~~i~iW~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 289 (564)
+...++=++|+|+.+.|.++-.+ |.|.-|.+.. |. +. .+.+ .....++-+.++.+++|++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~---------Lt--~ln~----~~~~g~~p~yvsvd~~g~~ 102 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGR---------LT--FLNR----QTLPGSPPCYVSVDEDGRF 102 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCe---------EE--Eeec----cccCCCCCeEEEECCCCCE
Confidence 44556778999999999988654 6677666653 21 11 1111 1111233378899999999
Q ss_pred EEEEeCC-CeEEEEECC--CceeE--eecCCCCC----------EEEEEeCCCCCEEEEeeCC-CcEEEEECCCcceeEE
Q 008467 290 LATGSYD-GQARIWSTN--GDLKC--TLSKHKGP----------IFSLKWNKKGDYLLTGSCD-KTAIVWDVKTEEWKQQ 353 (564)
Q Consensus 290 l~sg~~d-g~i~vw~~~--~~~~~--~~~~h~~~----------V~~l~~~~~~~~l~s~s~D-~~v~iwd~~~~~~~~~ 353 (564)
++++.+. |.|.++-.+ |.+.. ....|.++ +....+.|++++|++.+.. -.|.+|++..+.+...
T Consensus 103 vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~ 182 (346)
T COG2706 103 VFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPA 182 (346)
T ss_pred EEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccc
Confidence 9999875 788998653 43322 23345555 8889999999999887642 3578888775543221
Q ss_pred EeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CCcEEEEeCCCC-
Q 008467 354 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQD- 431 (564)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg~i~iwd~~~~- 431 (564)
-.. .+ .-...-+-|.|+|++++.....+ +++|.+|..+..
T Consensus 183 ~~~-------------------------------------~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~ 224 (346)
T COG2706 183 DPA-------------------------------------EV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAV 224 (346)
T ss_pred ccc-------------------------------------cc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCC
Confidence 100 00 11123456899999999877666 999999998763
Q ss_pred eeeeecccc---------cccEEEEEEccCCCCCCCCCCcEEEEEE-eCCCeEEEEeCCC--CeEE--EEEeCCCCCEEE
Q 008467 432 KYVHDLREH---------SKEIYTIRWSPTGSGTNNPNQQLILASA-SFDSTVKLWDVEL--GKLL--YSLNGHREPVYS 497 (564)
Q Consensus 432 ~~~~~~~~~---------~~~i~~i~~~p~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~--~~~~--~~~~~h~~~i~~ 497 (564)
..+..++.+ ....-.|..+|+|+ +|.++ =....|-+|.+.. +++. .....+...-..
T Consensus 225 g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGr---------FLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~ 295 (346)
T COG2706 225 GKFEELQTIDTLPEDFTGTNWAAAIHISPDGR---------FLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRD 295 (346)
T ss_pred ceEEEeeeeccCccccCCCCceeEEEECCCCC---------EEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcc
Confidence 222222221 23456677788775 33333 2234677777653 3322 122233344578
Q ss_pred EEEcCCCCEEEEEeCC-CcEEEEeCC--CCeEEE
Q 008467 498 LAFSPTGEYLASGSLD-KSMHIWSLK--EGKIVK 528 (564)
Q Consensus 498 ~~~spdg~~lasgs~d-g~i~iw~~~--~~~~~~ 528 (564)
..|+|+|++|+++..+ ..|.+|.+. +|.+-.
T Consensus 296 F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 296 FNINPSGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred ceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 8999999999988765 468888764 555543
No 283
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.97 E-value=5.9e-06 Score=78.03 Aligned_cols=222 Identities=15% Similarity=0.169 Sum_probs=144.3
Q ss_pred EEEECC-CCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeC-CCCCEEEEeeCCCcEEEEECCCcceeEEEeec
Q 008467 280 TLDWNG-EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWN-KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 357 (564)
Q Consensus 280 ~l~~s~-~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 357 (564)
+..|.+ ++.++++-...+.|..|+..+.....+.... ..++.+. ++ ..|+.+..++ +.++|+.++++...+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 467887 7778888778899999998877655443333 5667777 55 4555555544 455588877543322110
Q ss_pred ccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecC-CCcceEEEEECCCCCEEEEEeCC--------CcEEEEeC
Q 008467 358 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDD--------VTAKIWNM 428 (564)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~i~~v~~~~~~~~las~s~d--------g~i~iwd~ 428 (564)
. .. .....+.++++|+|++.++.+.. |.+..++.
T Consensus 80 ~-------------------------------------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~ 122 (246)
T PF08450_consen 80 D-------------------------------------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDP 122 (246)
T ss_dssp T-------------------------------------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEET
T ss_pred C-------------------------------------CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECC
Confidence 0 01 22357789999999988877654 44666666
Q ss_pred CCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--C-----eEEEEEeCCCCCEEEEEEc
Q 008467 429 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--G-----KLLYSLNGHREPVYSLAFS 501 (564)
Q Consensus 429 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~-----~~~~~~~~h~~~i~~~~~s 501 (564)
. ++. ..+...-.....|+|+|++. .++++-+..+.|..+++.. + +....+.........+++.
T Consensus 123 ~-~~~-~~~~~~~~~pNGi~~s~dg~--------~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD 192 (246)
T PF08450_consen 123 D-GKV-TVVADGLGFPNGIAFSPDGK--------TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD 192 (246)
T ss_dssp T-SEE-EEEEEEESSEEEEEEETTSS--------EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB
T ss_pred C-CeE-EEEecCcccccceEECCcch--------heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc
Confidence 5 332 22222334457899999875 3556778889999998853 2 1122233222237889999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEE-ccCCCEEEEEEc
Q 008467 502 PTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCW-NKEGDKIAACFA 553 (564)
Q Consensus 502 pdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w-~~~g~~la~~~~ 553 (564)
.+|++.++.-..+.|.+++.. |+++..+... ..+++++| -++.+.|.+.++
T Consensus 193 ~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 193 SDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp TTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred CCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 999998888888999999987 8888877665 57899999 467777766543
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=5.4e-07 Score=91.28 Aligned_cols=193 Identities=13% Similarity=0.053 Sum_probs=114.3
Q ss_pred CeEEEEECCCCCE-EEEEeCC---CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEE-eeCCC--cEEEEECCCcc
Q 008467 277 DVTTLDWNGEGTL-LATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT-GSCDK--TAIVWDVKTEE 349 (564)
Q Consensus 277 ~V~~l~~s~~g~~-l~sg~~d---g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~D~--~v~iwd~~~~~ 349 (564)
.+....|||||+. ++..+.+ ..|.+++..+.....+....+.+....|+|+|+.++. .+.++ .|.++|+.++.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 4667899999984 6655544 4677778766555555556666777889999987764 33332 34444544433
Q ss_pred eeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CC--cEEEE
Q 008467 350 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV--TAKIW 426 (564)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg--~i~iw 426 (564)
.. .+..+.+......|+|||+.|+-.++ .+ .|.+.
T Consensus 269 ~~------------------------------------------~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~ 306 (419)
T PRK04043 269 LT------------------------------------------QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMK 306 (419)
T ss_pred EE------------------------------------------EcccCCCccCccEECCCCCEEEEEECCCCCceEEEE
Confidence 21 11112222224579999987766654 34 46667
Q ss_pred eCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC--------CeEEEEeCCCCeEEEEEeCCCCCEEEE
Q 008467 427 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD--------STVKLWDVELGKLLYSLNGHREPVYSL 498 (564)
Q Consensus 427 d~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~h~~~i~~~ 498 (564)
|+.++.... +..... ....|+|+|. .++.+.... ..|.+.|+..+.. ..+... ......
T Consensus 307 dl~~g~~~r-lt~~g~--~~~~~SPDG~--------~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p 373 (419)
T PRK04043 307 KLNSGSVEQ-VVFHGK--NNSSVSTYKN--------YIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFP 373 (419)
T ss_pred ECCCCCeEe-CccCCC--cCceECCCCC--------EEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCe
Confidence 777665532 221111 2248999886 234443332 3688888887754 344432 233458
Q ss_pred EEcCCCCEEEEEeCC---CcEEEEeCCCC
Q 008467 499 AFSPTGEYLASGSLD---KSMHIWSLKEG 524 (564)
Q Consensus 499 ~~spdg~~lasgs~d---g~i~iw~~~~~ 524 (564)
+|||||++|+-.+.+ ..+.+.++...
T Consensus 374 ~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 374 RFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 899999988765543 23666666543
No 285
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.95 E-value=2.7e-08 Score=91.60 Aligned_cols=237 Identities=15% Similarity=0.286 Sum_probs=155.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCC--ce-eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC----CC
Q 008467 275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNG--DL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV----KT 347 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~--~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~----~~ 347 (564)
...|+....-|...-+++.+.|.++|||-... +. .........+++++.+++....|+.|-..|++.-+.+ +.
T Consensus 24 ~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnk 103 (404)
T KOG1409|consen 24 QDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNK 103 (404)
T ss_pred hhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhh
Confidence 44566666666667789999999999995322 11 1122334678899999999999999999999988854 34
Q ss_pred cceeEEEeecccCeEEEEcCCC-ceEEEEeCCCeE-EEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEE
Q 008467 348 EEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMI-YVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 425 (564)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i-~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~i 425 (564)
....+.+..|...+..+-+.-. ..+++.+.|..+ +.+.- .+..+..+.- ....+++.+.-. +...|...|.|.+
T Consensus 104 m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e-~~~~lg~Y~~-~~~~t~~~~d~~--~~fvGd~~gqvt~ 179 (404)
T KOG1409|consen 104 MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTE-SGNRLGGYNF-ETPASALQFDAL--YAFVGDHSGQITM 179 (404)
T ss_pred cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeec-cCCcccceEe-eccCCCCceeeE--EEEecccccceEE
Confidence 4555566667777766655433 333444444433 22211 1111111000 001111111111 3334444555544
Q ss_pred EeC--CCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEEeCCCCCEEEEEEcC
Q 008467 426 WNM--KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSP 502 (564)
Q Consensus 426 wd~--~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~~~~~sp 502 (564)
-.+ ..-.++.++.+|...++++.|.|... +|.+|..|..|.+||+.-.+ ..+.+.+|...|..+.+-+
T Consensus 180 lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~---------~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~ 250 (404)
T KOG1409|consen 180 LKLEQNGCQLITTFNGHTGEVTCLKWDPGQR---------LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ 250 (404)
T ss_pred EEEeecCCceEEEEcCcccceEEEEEcCCCc---------EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence 332 34456778899999999999988653 79999999999999987443 3467888999999999988
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC
Q 008467 503 TGEYLASGSLDKSMHIWSLKEG 524 (564)
Q Consensus 503 dg~~lasgs~dg~i~iw~~~~~ 524 (564)
--+.|.+++.||.|.+|+.+..
T Consensus 251 ~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 251 HTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hheeeeeccCCCeEEEEeccce
Confidence 8899999999999999998643
No 286
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.91 E-value=7.5e-07 Score=85.63 Aligned_cols=214 Identities=14% Similarity=0.208 Sum_probs=149.5
Q ss_pred eCCCCCEEEEeeCCCcEEEEECCCcceeEEEeec-------ccCe--------EEEEcCCCceEEEEeCCCeEEEEEcCC
Q 008467 324 WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH-------SGPT--------LDVDWRNNVSFATSSTDNMIYVCKIGE 388 (564)
Q Consensus 324 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-------~~~~--------~~~~~~~~~~~~~~~~d~~i~~~~~~~ 388 (564)
.+.+|+.++- +..|.|.++|..+..+.. ++.. ..+. -+....+...++..| .|..++.+...
T Consensus 274 ~nsDGkrIvF-q~~GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~ 350 (668)
T COG4946 274 ANSDGKRIVF-QNAGDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWD 350 (668)
T ss_pred cCCCCcEEEE-ecCCcEEEeCCCcCccee-eecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCC
Confidence 3567887765 345789999988765433 1111 0000 011122233333332 34455555444
Q ss_pred CceeeEecCCCcceEEEEECCCCCEEEEEeCCC-cEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEE
Q 008467 389 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV-TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS 467 (564)
Q Consensus 389 ~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg-~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s 467 (564)
+-.++ .+|.+.|.-..+.-+++-++.|..|| .+-|+|..+++. ..+...-+.|.++..+|+|. .++.
T Consensus 351 ~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK---------~~vv 418 (668)
T COG4946 351 GYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGK---------KVVV 418 (668)
T ss_pred CeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCc---------EEEE
Confidence 43333 36777788888888888899999999 899999988764 34455667899999999986 5777
Q ss_pred EeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEeCCCCeEEEEEecCCCEEEEEEcc
Q 008467 468 ASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD----KSMHIWSLKEGKIVKTYTGNGGIFEVCWNK 543 (564)
Q Consensus 468 ~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d----g~i~iw~~~~~~~~~~~~~~~~i~~~~w~~ 543 (564)
+.....|-+.|+.+|.....-+...+-|+..+|||+++|||-+--+ ..|+++|..++++....+..+--++.+|+|
T Consensus 419 aNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~ 498 (668)
T COG4946 419 ANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDP 498 (668)
T ss_pred EcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCC
Confidence 8778889899999998754444455679999999999999976554 479999999999887766666667889999
Q ss_pred CCCEEEEEE
Q 008467 544 EGDKIAACF 552 (564)
Q Consensus 544 ~g~~la~~~ 552 (564)
||++|-.-+
T Consensus 499 d~ryLYfLs 507 (668)
T COG4946 499 DGRYLYFLS 507 (668)
T ss_pred CCcEEEEEe
Confidence 999776543
No 287
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.90 E-value=2.5e-08 Score=100.40 Aligned_cols=290 Identities=20% Similarity=0.331 Sum_probs=180.2
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC--CEEEEEe
Q 008467 217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG--TLLATGS 294 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g--~~l~sg~ 294 (564)
.++.++..+|.|+-+|.++.-|... -|+...-. |. ..+.+.. .-.|-.+.||+.. .+-++..
T Consensus 25 ~~~~a~si~p~grdi~lAsr~gl~i-~dld~p~~-------pp--r~l~h~t------pw~vad~qws~h~a~~~wiVst 88 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQGLYI-IDLDDPFT-------PP--RWLHHIT------PWQVADVQWSPHPAKPYWIVST 88 (1081)
T ss_pred CcccceeeccccchhhhhhhcCeEE-EeccCCCC-------Cc--eeeeccC------cchhcceecccCCCCceeEEec
Confidence 5678899999999888888766543 35433210 10 1111111 1235566777643 3334444
Q ss_pred CCCeEEEEECC----CceeEeecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCccee-EEEeecccCeEEEEcCC
Q 008467 295 YDGQARIWSTN----GDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWRN 368 (564)
Q Consensus 295 ~dg~i~vw~~~----~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~ 368 (564)
......+|+.. ..+...+.+|..+|+.+.|+|+.. .+++++.|-.+-.||+++-... -.+.........+.|..
T Consensus 89 s~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwny 168 (1081)
T KOG0309|consen 89 SNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNY 168 (1081)
T ss_pred CcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecc
Confidence 45566688753 234556789999999999999764 5789999999999999875422 22222222333455543
Q ss_pred C-ceEEEEeCCCeEEEEEcCCC-ceeeEecCCCcceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeee-eecccccccE
Q 008467 369 N-VSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYV-HDLREHSKEI 444 (564)
Q Consensus 369 ~-~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~v~~~~~-~~~las~s~dg~i~iwd~~~~~~~-~~~~~~~~~i 444 (564)
. ....+++-.+.|++|+.+.+ .|+..+++|...|+.++|+.- ...+.+++.||+++.||....... .......-+|
T Consensus 169 k~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~pi 248 (1081)
T KOG0309|consen 169 KDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPI 248 (1081)
T ss_pred cCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcc
Confidence 2 23344556677999998765 578889999999999998753 356789999999999997543211 1111233456
Q ss_pred EEEEEccCCCCCCC-C--CCcEEEEEEeCCCeEEEEeCCC-CeEEEEEeCCCCCEEEEEEcCCC----------CEEEEE
Q 008467 445 YTIRWSPTGSGTNN-P--NQQLILASASFDSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTG----------EYLASG 510 (564)
Q Consensus 445 ~~i~~~p~~~~~~~-~--~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~i~~~~~spdg----------~~lasg 510 (564)
..-++-|-|.+... | ....+.. --.+..-..|++.+ .+.++++.||.+.|...-|-..+ -.|+|=
T Consensus 249 w~~r~~Pfg~g~~~mp~~G~n~v~~-~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTW 327 (1081)
T KOG0309|consen 249 WRGRYLPFGEGYCIMPMVGGNMVPQ-LRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTW 327 (1081)
T ss_pred eeccccccCceeEeccccCCeeeee-ccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEe
Confidence 66666676643210 0 0001111 11123334455543 36789999999887665554322 258999
Q ss_pred eCCCcEEEEeCCC
Q 008467 511 SLDKSMHIWSLKE 523 (564)
Q Consensus 511 s~dg~i~iw~~~~ 523 (564)
|.|..+++|-+.+
T Consensus 328 SkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 328 SKDQTLRLWPIDS 340 (1081)
T ss_pred ecCCceEeeeccH
Confidence 9999999998764
No 288
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.89 E-value=1.3e-07 Score=85.92 Aligned_cols=275 Identities=17% Similarity=0.297 Sum_probs=158.1
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCC-----CCCCCceEEEEEeeccccccCCCCeEEEEECCCC--CE
Q 008467 217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGG-----AQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG--TL 289 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g--~~ 289 (564)
.-|+++.|...|.+|++|...|.+.++.-.....-.. .+........++.+ .....|..+.|-.++ ..
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSl-----eieEKin~I~w~~~t~r~h 101 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSL-----EIEEKINAIEWFDDTGRNH 101 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhc-----cHHHHhhheeeecCCCcce
Confidence 4578999999999999999889999997544321000 11111000001100 112347778887654 35
Q ss_pred EEEEeCCCeEEEEECCCceeEee----------cCCCCCEEEEE------eCCCCCEEEEeeCCCcEEEEECCCcceeEE
Q 008467 290 LATGSYDGQARIWSTNGDLKCTL----------SKHKGPIFSLK------WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 353 (564)
Q Consensus 290 l~sg~~dg~i~vw~~~~~~~~~~----------~~h~~~V~~l~------~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 353 (564)
++..+.|.+|++|....+-.... ....+|+++.+ .+.... ++++ . -.+++
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~-iiaa-~--p~rvy---------- 167 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDE-IIAA-K--PCRVY---------- 167 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccce-EEEe-c--cceec----------
Confidence 67778899999997543211111 01123333221 111111 1111 1 11111
Q ss_pred EeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCC---ceeeEecCCC-----cceEEEEECCCC-CEEEEEeCCCcEE
Q 008467 354 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN---RPIKTFAGHQ-----GEVNCVKWDPTG-SLLASCSDDVTAK 424 (564)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~---~~~~~~~~h~-----~~i~~v~~~~~~-~~las~s~dg~i~ 424 (564)
-..|.-.+.++.+..+..+..+..|-.|.+|.+... -.+...+.|. .-|++..|+|.. .++.-.+..|.|+
T Consensus 168 aNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 168 ANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred cccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 022333455666666666777777777777776432 1233334443 347889999964 5566778899999
Q ss_pred EEeCCCCeee----------------eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEE
Q 008467 425 IWNMKQDKYV----------------HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYS 487 (564)
Q Consensus 425 iwd~~~~~~~----------------~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~ 487 (564)
+-|++..... .-+..-...|..+.|+|.|+ ++++-+. -+|+|||++.. .++.+
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr---------yIlsRdy-ltvkiwDvnm~k~pikT 317 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR---------YILSRDY-LTVKIWDVNMAKNPIKT 317 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc---------EEEEecc-ceEEEEecccccCCcee
Confidence 9999843211 01122335678889999886 5665543 68999999854 45666
Q ss_pred EeCCC------------CCE---EEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467 488 LNGHR------------EPV---YSLAFSPTGEYLASGSLDKSMHIWS 520 (564)
Q Consensus 488 ~~~h~------------~~i---~~~~~spdg~~lasgs~dg~i~iw~ 520 (564)
+.-|. ..| ..+.||-|.+.+.+|+.....-||-
T Consensus 318 i~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 318 IPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred echHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 54332 234 3478998888888888776666665
No 289
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.87 E-value=5.8e-06 Score=79.71 Aligned_cols=307 Identities=18% Similarity=0.208 Sum_probs=178.0
Q ss_pred ECC-CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCC-eEEE
Q 008467 224 WSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG-QARI 301 (564)
Q Consensus 224 ~sp-~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg-~i~v 301 (564)
|++ +|.++|..|. |.+.|.+...+-. ++ .++...|.-..+..+++-++.|..|| .+-|
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~-------------iq------v~~~~~VrY~r~~~~~e~~vigt~dgD~l~i 386 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYS-------------IQ------VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGI 386 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCee-------------EE------cCCCCceEEEEEccCCcceEEeccCCceEEE
Confidence 555 5777777653 5566655433211 11 11234477777888888999999999 8999
Q ss_pred EECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEe-CC--
Q 008467 302 WSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSS-TD-- 378 (564)
Q Consensus 302 w~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d-- 378 (564)
++..+.....+...-+.|.+++.+++|++++.+.....+.+.|+.++.....-....+-+.++.|+++..|++-+ .+
T Consensus 387 yd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy 466 (668)
T COG4946 387 YDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGY 466 (668)
T ss_pred EecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcce
Confidence 999998888888888999999999999999999888899999999998766555566778999999988776543 33
Q ss_pred --CeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeee--cccccccEEEEEEccCCC
Q 008467 379 --NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGS 454 (564)
Q Consensus 379 --~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~--~~~~~~~i~~i~~~p~~~ 454 (564)
..|+++++..++....-. .++.=-+-+|.||+++|.--|.- --|....+.+.. +..+..+...+ .+.
T Consensus 467 ~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~R----sLdPs~Drv~fnf~f~~vskPylv~----L~~ 537 (668)
T COG4946 467 YTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSAR----SLDPSNDRVIFNFSFQRVSKPYLVV----LGR 537 (668)
T ss_pred eeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEecc----ccCCCCCeeEEEEEEeeeccceEEE----ecC
Confidence 357888888776543322 22222356899999987654431 112222222221 22233322111 111
Q ss_pred CCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE--------EEEeCCCCC-EEEEEEcCCC---CEEEEEeCCCcEEEEeCC
Q 008467 455 GTNNPNQQLILASASFDSTVKLWDVELGKLL--------YSLNGHREP-VYSLAFSPTG---EYLASGSLDKSMHIWSLK 522 (564)
Q Consensus 455 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--------~~~~~h~~~-i~~~~~spdg---~~lasgs~dg~i~iw~~~ 522 (564)
+..+|-.+..=-.-+.+|.+-+=++...... ..+.+.... |.-.++--.| .++-.+-.-|.+.+||++
T Consensus 538 g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydle 617 (668)
T COG4946 538 GYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLE 617 (668)
T ss_pred CCCChhhcCchhcCccccceehhhhcccccccccCccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecc
Confidence 1111111000001122233222211111000 001111111 2111111112 122223445778888887
Q ss_pred CCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 523 EGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 523 ~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
+.+.. .+ ...+.++..|+||+++.+ -.++.+..+++.
T Consensus 618 tkk~~-e~--k~nvss~rlS~D~s~ilv-k~d~kl~~f~ve 654 (668)
T COG4946 618 TKKVE-EY--KDNVSSFRLSSDGSKILV-KLDGKLRLFDVE 654 (668)
T ss_pred hhhHH-HH--hcccceEEEcCCCCEEEE-EeCCeEEEEecc
Confidence 65421 11 245789999999999998 678899999874
No 290
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=4.2e-09 Score=107.73 Aligned_cols=254 Identities=17% Similarity=0.356 Sum_probs=172.4
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCC--cEEEEECCC-c
Q 008467 273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK--TAIVWDVKT-E 348 (564)
Q Consensus 273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~--~v~iwd~~~-~ 348 (564)
.+....+|++|+.+.+.|+.|+..|.|+++++. |.......+|.++|+-+.=+.+|..+++.+.-. -..+|++.. +
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence 345678999999999999999999999999975 555667889999999999999998877655443 467998754 3
Q ss_pred ceeEEEeecccCeEEEEcCCCceEE-EEeCCCeEEEEEcCCCceeeEec-C---CCcceEEEEECCCCCEEEEEeCCCcE
Q 008467 349 EWKQQFEFHSGPTLDVDWRNNVSFA-TSSTDNMIYVCKIGENRPIKTFA-G---HQGEVNCVKWDPTGSLLASCSDDVTA 423 (564)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~~~~~~-~---h~~~i~~v~~~~~~~~las~s~dg~i 423 (564)
...+.|.. -..+.|.+...+. .+.......+||+.+..++.++- + .+..-+++.|+|+.+++. .||
T Consensus 1179 ~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG-- 1249 (1516)
T KOG1832|consen 1179 GPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG-- 1249 (1516)
T ss_pred Cccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--
Confidence 33333322 1234454444332 23333456789999988877742 2 223447899999999876 455
Q ss_pred EEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCC
Q 008467 424 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT 503 (564)
Q Consensus 424 ~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spd 503 (564)
.+||.+....++.|...+ -.+.+.++|++..+++- -.|||+++-+.+++...-. -..|.|+..
T Consensus 1250 vLWDvR~~~aIh~FD~ft---------~~~~G~FHP~g~eVIIN------SEIwD~RTF~lLh~VP~Ld--qc~VtFNst 1312 (1516)
T KOG1832|consen 1250 VLWDVRIPEAIHRFDQFT---------DYGGGGFHPSGNEVIIN------SEIWDMRTFKLLHSVPSLD--QCAVTFNST 1312 (1516)
T ss_pred eeeeeccHHHHhhhhhhe---------ecccccccCCCceEEee------chhhhhHHHHHHhcCcccc--ceEEEeccC
Confidence 479998877676664433 12233334443334432 2589999988776554322 256889888
Q ss_pred CCEEEEEe-----C-C-----------CcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEE
Q 008467 504 GEYLASGS-----L-D-----------KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACF 552 (564)
Q Consensus 504 g~~lasgs-----~-d-----------g~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~ 552 (564)
|..+...- . | ...+-|+..+.+.+.++...-++.++|=+|...+|++--
T Consensus 1313 G~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1313 GDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred ccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEEe
Confidence 87665332 0 0 234566677777788888888899999999998887643
No 291
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.85 E-value=6.7e-08 Score=91.07 Aligned_cols=88 Identities=23% Similarity=0.335 Sum_probs=71.7
Q ss_pred eeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecc-cccccEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008467 392 IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASF 470 (564)
Q Consensus 392 ~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~ 470 (564)
.....||-+.+..|+|+||+++|+++..|..|||-....-..+..|- +|..-|..++..++- .|+|||.
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~----------~LlS~sG 213 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY----------LLLSGSG 213 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc----------eeeecCC
Confidence 34456899999999999999999999999999997665544444443 688888888876642 5899999
Q ss_pred CCeEEEEeCCCCeEEEEEe
Q 008467 471 DSTVKLWDVELGKLLYSLN 489 (564)
Q Consensus 471 dg~i~iwd~~~~~~~~~~~ 489 (564)
|++|++||+.+|+++.++.
T Consensus 214 D~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CCcEEEEecccCCcccccc
Confidence 9999999999999886653
No 292
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.85 E-value=2.7e-06 Score=79.94 Aligned_cols=220 Identities=19% Similarity=0.146 Sum_probs=135.3
Q ss_pred CCeEEEEEC-CCceeEeecC---CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCce
Q 008467 296 DGQARIWST-NGDLKCTLSK---HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 371 (564)
Q Consensus 296 dg~i~vw~~-~~~~~~~~~~---h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (564)
+|.|..||. +|+......- ...++ +. ..+++.++++++.++.+..||..+|+.+-.+.......... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPV-AT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEE-ET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCcc-ce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccc
Confidence 577888886 5665554432 22222 11 22356788888999999999999999877766522211111 222334
Q ss_pred EEEEeCCCeEEEEEcCCCceeeEe-cCCC---cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccE-EE
Q 008467 372 FATSSTDNMIYVCKIGENRPIKTF-AGHQ---GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI-YT 446 (564)
Q Consensus 372 ~~~~~~d~~i~~~~~~~~~~~~~~-~~h~---~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i-~~ 446 (564)
++....++.++.++..+++.+-.. .... ..........++..++.+..++.|..+|.++++.+.......... ..
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 444557779999998888877663 3221 111122222237888888889999999999999876665433210 00
Q ss_pred E------EEccCCCCCCCCCCcEEEEEEeCCCe-EEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008467 447 I------RWSPTGSGTNNPNQQLILASASFDST-VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW 519 (564)
Q Consensus 447 i------~~~p~~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw 519 (564)
+ .-.+.- .+. .+..++.++. +.+ |+.+++.++... . ..+.. ...+++..|+.++.++.|.+|
T Consensus 159 ~~~~~~~~~~~~~-----~~~--~v~~~~~~g~~~~~-d~~tg~~~w~~~-~-~~~~~-~~~~~~~~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 159 ISSFSDINGSPVI-----SDG--RVYVSSGDGRVVAV-DLATGEKLWSKP-I-SGIYS-LPSVDGGTLYVTSSDGRLYAL 227 (238)
T ss_dssp EEEETTEEEEEEC-----CTT--EEEEECCTSSEEEE-ETTTTEEEEEEC-S-S-ECE-CEECCCTEEEEEETTTEEEEE
T ss_pred eeeecccccceEE-----ECC--EEEEEcCCCeEEEE-ECCCCCEEEEec-C-CCccC-CceeeCCEEEEEeCCCEEEEE
Confidence 0 001100 011 3455666775 555 999999776444 2 22222 245778888888899999999
Q ss_pred eCCCCeEEEE
Q 008467 520 SLKEGKIVKT 529 (564)
Q Consensus 520 ~~~~~~~~~~ 529 (564)
|+++|+.+..
T Consensus 228 d~~tG~~~W~ 237 (238)
T PF13360_consen 228 DLKTGKVVWQ 237 (238)
T ss_dssp ETTTTEEEEE
T ss_pred ECCCCCEEeE
Confidence 9999998764
No 293
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.85 E-value=4.4e-08 Score=92.26 Aligned_cols=166 Identities=14% Similarity=0.173 Sum_probs=105.8
Q ss_pred EEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 008467 221 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQAR 300 (564)
Q Consensus 221 ~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~ 300 (564)
....+|.+++||.+..+....++++...... . ......... .....++.+..+........++....+.
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~----~---kl~~~~~v~----~~~~ai~~~~~~~sv~v~dkagD~~~~d 135 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKG----A---KLLDVSCVP----KRPTAISFIREDTSVLVADKAGDVYSFD 135 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCc----c---eeeeEeecc----cCcceeeeeeccceEEEEeecCCceeee
Confidence 4456677777777776666666665432110 0 000111110 1122344444444444444455556777
Q ss_pred EEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCe
Q 008467 301 IWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNM 380 (564)
Q Consensus 301 vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 380 (564)
+|.........+-+|-+.++.++|+||+.+|+++..|..|++-....--.+.
T Consensus 136 i~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ie---------------------------- 187 (390)
T KOG3914|consen 136 ILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIE---------------------------- 187 (390)
T ss_pred eecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchh----------------------------
Confidence 7776533333456899999999999999999999999999986543211110
Q ss_pred EEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecc
Q 008467 381 IYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 438 (564)
Q Consensus 381 i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~ 438 (564)
.-+.||+..|..++.-++ ..|+|+|.|+++++||+.+++.++++.
T Consensus 188 ------------sfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 188 ------------SFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ------------hhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcccccc
Confidence 123589999999998754 558999999999999999999886653
No 294
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=1.6e-08 Score=98.47 Aligned_cols=272 Identities=14% Similarity=0.194 Sum_probs=174.6
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECC--C------ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC
Q 008467 274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTN--G------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 345 (564)
Q Consensus 274 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~--~------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~ 345 (564)
|...|..++--.+.+-+++++.|.+|++|... + ....++..|+.+|.++.|-.+.++++++ |+-+.+||.
T Consensus 734 H~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDP 811 (1034)
T KOG4190|consen 734 HQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDP 811 (1034)
T ss_pred cHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecc
Confidence 44455555544567789999999999999853 2 1345678999999999999888877654 889999998
Q ss_pred CCcceeEEEee-----cccCeEEEEc-CCCceEEEEeCCCeEEEEEcCCCceeeEe-----cCCCcceEEEEECCCCCEE
Q 008467 346 KTEEWKQQFEF-----HSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTF-----AGHQGEVNCVKWDPTGSLL 414 (564)
Q Consensus 346 ~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-----~~h~~~i~~v~~~~~~~~l 414 (564)
--+....+... ..+.+.++.- .....++.|+...++.++|.+...-+..+ .+.++.+.+++.-+.|+.+
T Consensus 812 Figr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~l 891 (1034)
T KOG4190|consen 812 FIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKL 891 (1034)
T ss_pred cccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchh
Confidence 76665543321 1122333322 22344566788888988887665433222 3455678999999999999
Q ss_pred EEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEE-EeCCCCeEEEEEeCCCC
Q 008467 415 ASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL-WDVELGKLLYSLNGHRE 493 (564)
Q Consensus 415 as~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~i-wd~~~~~~~~~~~~h~~ 493 (564)
|.+-..|.|.+.|.++++.+...+........++- | .++ .|+....|.++.+ |....|...+..+....
T Consensus 892 Aa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-p--------sdq-~L~~saldHslaVnWhaldgimh~q~kpppe 961 (1034)
T KOG4190|consen 892 AAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-P--------SDQ-ALAQSALDHSLAVNWHALDGIMHLQDKPPPE 961 (1034)
T ss_pred hHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-c--------hhH-HHHhhcccceeEeeehhcCCeeeeccCCCCc
Confidence 99999999999999999988776654433333321 2 111 4677777888988 98877777666554333
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-------eEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEE
Q 008467 494 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEG-------KIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCV 559 (564)
Q Consensus 494 ~i~~~~~spdg~~lasgs~dg~i~iw~~~~~-------~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v 559 (564)
|..-+ -.-|.-|+++.....+.+|.-... ..++.-+-.+..++++--|-..-+.+|...|.+++
T Consensus 962 pahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 962 PAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred chhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 32111 123555666666666666642110 01111111344567777776666666766777665
No 295
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.83 E-value=1.4e-05 Score=81.18 Aligned_cols=251 Identities=14% Similarity=0.128 Sum_probs=150.3
Q ss_pred CCEEEEEeCCCeEEEEEC-CCceeEeecCCCCCEEE-EEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecc------
Q 008467 287 GTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFS-LKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS------ 358 (564)
Q Consensus 287 g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~~V~~-l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~------ 358 (564)
+..++.++.+|.+..+|. +|+........ +++.+ ... .+..++.++.++.+..+|..+|+.+-.+....
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 456777888999999996 46655444322 22211 011 24567778889999999999998776554321
Q ss_pred ---cCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCC----c---ceEEEEECC--CCCEEEEEeCCCcEEEE
Q 008467 359 ---GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ----G---EVNCVKWDP--TGSLLASCSDDVTAKIW 426 (564)
Q Consensus 359 ---~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~----~---~i~~v~~~~--~~~~las~s~dg~i~iw 426 (564)
.++. .+..++.++.++.++.++..+++.+-.+.... . ....+..+| .+..++.++.+|.+..+
T Consensus 197 ~~~sP~v-----~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~al 271 (394)
T PRK11138 197 GESAPAT-----AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVAL 271 (394)
T ss_pred CCCCCEE-----ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEE
Confidence 1111 12234556677888888877766543322100 0 011111122 24556677789999999
Q ss_pred eCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCC-CEEEEEEcCCCC
Q 008467 427 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE-PVYSLAFSPTGE 505 (564)
Q Consensus 427 d~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~-~i~~~~~spdg~ 505 (564)
|..+++.+-.... .....+.. .+ + .+..++.+|.+..+|..+|+.+.....-.. ...+... .+.
T Consensus 272 d~~tG~~~W~~~~--~~~~~~~~--~~-------~--~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g 336 (394)
T PRK11138 272 DLRSGQIVWKREY--GSVNDFAV--DG-------G--RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNG 336 (394)
T ss_pred ECCCCCEEEeecC--CCccCcEE--EC-------C--EEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECC
Confidence 9988876543221 10001111 01 1 355677899999999999988775432111 1111222 256
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEE-EEEccCCCEEEEEEcCCcEEEEEe
Q 008467 506 YLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFE-VCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 506 ~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~-~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
+|+.++.||.|.+.|..+|+++..+... ..+.. ... .+.+|.+++.+|.+..++.
T Consensus 337 ~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 337 YLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 7788899999999999999998877543 23332 122 3568888889998877653
No 296
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.83 E-value=9.9e-07 Score=78.81 Aligned_cols=215 Identities=14% Similarity=0.082 Sum_probs=137.4
Q ss_pred CCEEEEeeCCCcEEEEECCCcceeEEE-eecccCeEEEE--cCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCc--ce
Q 008467 328 GDYLLTGSCDKTAIVWDVKTEEWKQQF-EFHSGPTLDVD--WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQG--EV 402 (564)
Q Consensus 328 ~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~--~i 402 (564)
..+|+.|+.-|...+|.+.+.+..... ..+...+.-.. ......+..++.|.++.+.++..+..-. .-|.. .+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~--~~h~~~~~~ 161 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF--AVHNQNLTQ 161 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc--eeeccccce
Confidence 457889999999999999876543322 22111110000 0122345567778777777665432211 12322 37
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCee-eee--cccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 008467 403 NCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 479 (564)
Q Consensus 403 ~~v~~~~~~~~las~s~dg~i~iwd~~~~~~-~~~--~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 479 (564)
+++.+++|++++++.++...|..|.+..... +.. .......-.+..|+... ..+|+++.||++.|||+
T Consensus 162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~---------~~FAv~~Qdg~~~I~DV 232 (344)
T KOG4532|consen 162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND---------LQFAVVFQDGTCAIYDV 232 (344)
T ss_pred eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc---------ceEEEEecCCcEEEEEe
Confidence 8999999999999999999999998765432 211 11222333556666543 37899999999999999
Q ss_pred CCCeEEE-----EEeCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCeEEEEEe---c-----C-CCEEEEEEcc
Q 008467 480 ELGKLLY-----SLNGHREPVYSLAFSPTGE--YLASGSLDKSMHIWSLKEGKIVKTYT---G-----N-GGIFEVCWNK 543 (564)
Q Consensus 480 ~~~~~~~-----~~~~h~~~i~~~~~spdg~--~lasgs~dg~i~iw~~~~~~~~~~~~---~-----~-~~i~~~~w~~ 543 (564)
+...... +-..|.+.+..+.|+|-|. +|.-.-.-+.+++-|+++++-.+... . . ..|+.-+|+.
T Consensus 233 R~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~ 312 (344)
T KOG4532|consen 233 RNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNN 312 (344)
T ss_pred cccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccC
Confidence 8644322 1234788999999998763 45555556789999999986443321 1 1 2377888888
Q ss_pred CCCEEEEEEc
Q 008467 544 EGDKIAACFA 553 (564)
Q Consensus 544 ~g~~la~~~~ 553 (564)
++..+-+...
T Consensus 313 ~n~s~~v~~e 322 (344)
T KOG4532|consen 313 ENESNDVKNE 322 (344)
T ss_pred CCcccccccc
Confidence 8876665543
No 297
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.79 E-value=8.5e-08 Score=96.63 Aligned_cols=277 Identities=17% Similarity=0.315 Sum_probs=179.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECC--CceeEeecCCCC--CEEEEEeCCCC--CEEEEeeCCCcEEEEECCCc
Q 008467 275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTN--GDLKCTLSKHKG--PIFSLKWNKKG--DYLLTGSCDKTAIVWDVKTE 348 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~--~~~~~~~~~h~~--~V~~l~~~~~~--~~l~s~s~D~~v~iwd~~~~ 348 (564)
...+..+..+|.|+-+|.++.-|...+ +.. ..... .-.|-. .|-.+.|+|.. .+-+.........+|++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~i~-dld~p~~ppr-~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLYII-DLDDPFTPPR-WLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeEEE-eccCCCCCce-eeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 356778889999999999888775543 332 22111 112322 35567787754 23333334455678887432
Q ss_pred ---ceeEEEeecccCeEEEEcCCC--ceEEEEeCCCeEEEEEcCCC-ceeeEecCCCcceEEEEECCCCCEEEEEeCCCc
Q 008467 349 ---EWKQQFEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT 422 (564)
Q Consensus 349 ---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~ 422 (564)
...-.+..|...+.++.|.+. ..+++|+.|..+..|+++.. .|+..+..-......|+|+-....+...+....
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~ 181 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND 181 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCc
Confidence 222234567778999999654 57899999999999999764 566666555566778999876655556667778
Q ss_pred EEEEeCCCC-eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEEeCCCCCEEEEE
Q 008467 423 AKIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGHREPVYSLA 499 (564)
Q Consensus 423 i~iwd~~~~-~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~i~~~~ 499 (564)
|++||.+.+ .++..+++|...|+.+.|...-. ..+.+++.||+|++||..+... -++. ....||..-.
T Consensus 182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~--------s~~~s~~~d~tvkfw~y~kSt~e~~~~v-tt~~piw~~r 252 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY--------SEIMSSSNDGTVKFWDYSKSTTESKRTV-TTNFPIWRGR 252 (1081)
T ss_pred eEEEeccCCCcceEEecccceeeehHHHhhhhh--------hhhcccCCCCceeeecccccccccceec-cccCcceecc
Confidence 999999865 45778888888888888764322 2477899999999999875432 1222 2345778778
Q ss_pred EcCCCCEEEEEe--CCCcEEE---------EeCCCC-eEEEEEecCCC-EEEEEEccCCC----------EEEEEEcCCc
Q 008467 500 FSPTGEYLASGS--LDKSMHI---------WSLKEG-KIVKTYTGNGG-IFEVCWNKEGD----------KIAACFANHT 556 (564)
Q Consensus 500 ~spdg~~lasgs--~dg~i~i---------w~~~~~-~~~~~~~~~~~-i~~~~w~~~g~----------~la~~~~~~~ 556 (564)
|-|-|.-..+-- .+..+.+ |++.++ ..+++|.++.. |.++-|...+. .|++=+.|-.
T Consensus 253 ~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~ 332 (1081)
T KOG0309|consen 253 YLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT 332 (1081)
T ss_pred ccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCc
Confidence 888664332211 1123444 444332 46788877653 55666655432 6777788888
Q ss_pred EEEEEe
Q 008467 557 VCVLDF 562 (564)
Q Consensus 557 v~v~~~ 562 (564)
+++|-+
T Consensus 333 lrlWpI 338 (1081)
T KOG0309|consen 333 LRLWPI 338 (1081)
T ss_pred eEeeec
Confidence 888855
No 298
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.77 E-value=2.9e-08 Score=63.68 Aligned_cols=39 Identities=41% Similarity=0.867 Sum_probs=37.0
Q ss_pred CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467 482 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 520 (564)
Q Consensus 482 ~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~ 520 (564)
++++.++.+|..+|++|+|+|++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 299
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=1.1e-06 Score=89.48 Aligned_cols=235 Identities=14% Similarity=0.199 Sum_probs=156.3
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEC-CCceeEeecCCCCCEEEEEeCCCC------------CEEEEeeCCCcEEEEE
Q 008467 278 VTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKG------------DYLLTGSCDKTAIVWD 344 (564)
Q Consensus 278 V~~l~~s~~g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~~V~~l~~~~~~------------~~l~s~s~D~~v~iwd 344 (564)
-.+++|+|.| +||-|+.. .|.+-|. .-+....+..|...|+.++|.|-. -.|+++...|.|.+||
T Consensus 18 ~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 5678999987 56666643 5556664 446677888999999999998732 1355666679999999
Q ss_pred CCCcceeEEEeecccCeEEEEcCC---C--ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEEEe
Q 008467 345 VKTEEWKQQFEFHSGPTLDVDWRN---N--VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCS 418 (564)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las~s 418 (564)
...+..+..+..+..++.+++|.. + ..+++-+...++.+|+..++..+-.+........|+.++| |.+.+..-+
T Consensus 96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~ 175 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG 175 (1062)
T ss_pred ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc
Confidence 999988888888999999999842 2 3456667788999999888877666555555677788888 344444444
Q ss_pred CCCcEEEEeCCC-------Ceeeeecccccc----------------c-------EE--EEEEccCCCCCCCCCCcEEEE
Q 008467 419 DDVTAKIWNMKQ-------DKYVHDLREHSK----------------E-------IY--TIRWSPTGSGTNNPNQQLILA 466 (564)
Q Consensus 419 ~dg~i~iwd~~~-------~~~~~~~~~~~~----------------~-------i~--~i~~~p~~~~~~~~~~~~~l~ 466 (564)
..|.+.+-+.-. ++..+.-..|.. . .+ .++|+|.-. ..+++
T Consensus 176 s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~r-------n~lfi 248 (1062)
T KOG1912|consen 176 SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWR-------NILFI 248 (1062)
T ss_pred cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhh-------ceEEE
Confidence 555555544321 111111111111 0 00 122333221 12333
Q ss_pred EEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEeCCC
Q 008467 467 SASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG--EYLASGSLDKSMHIWSLKE 523 (564)
Q Consensus 467 s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg--~~lasgs~dg~i~iw~~~~ 523 (564)
+ ....+.|+|++-..++....-.++.+.-+.+-|++ ..|.++-.||.+.||-.+.
T Consensus 249 ~--~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 249 T--FPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred E--eccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 3 56789999999888888776556666667777776 5788999999999998764
No 300
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=1e-07 Score=87.96 Aligned_cols=157 Identities=15% Similarity=0.209 Sum_probs=107.8
Q ss_pred eCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-----eeeeecccccccEEEEEEc
Q 008467 376 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-----KYVHDLREHSKEIYTIRWS 450 (564)
Q Consensus 376 ~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~-----~~~~~~~~~~~~i~~i~~~ 450 (564)
+.+..+-+.++.++.. +.| ...+.|.++.|...++++..|..+|.|...|++.+ .+.+. -.|...|+++..-
T Consensus 231 G~sqqv~L~nvetg~~-qsf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq~L 307 (425)
T KOG2695|consen 231 GLSQQVLLTNVETGHQ-QSF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQIL 307 (425)
T ss_pred cccceeEEEEeecccc-ccc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE-EEcCcchhhhhhh
Confidence 3444444545443321 122 24567888999988999999999999999999865 22222 2477777776543
Q ss_pred cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE---EEEEeCCCCCEEE--EEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467 451 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKL---LYSLNGHREPVYS--LAFSPTGEYLASGSLDKSMHIWSLKEGK 525 (564)
Q Consensus 451 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~h~~~i~~--~~~spdg~~lasgs~dg~i~iw~~~~~~ 525 (564)
... ++ .|.+.+++|+|++||.+.-++ +....||...-.- +-..+....++++|.|...+||.++.|.
T Consensus 308 q~s-------~q-~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 308 QFS-------QQ-KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred ccc-------cc-eEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 311 12 577788999999999987666 7888888532222 2345667889999999999999999999
Q ss_pred EEEEEecCC-----CEEEEEEcc
Q 008467 526 IVKTYTGNG-----GIFEVCWNK 543 (564)
Q Consensus 526 ~~~~~~~~~-----~i~~~~w~~ 543 (564)
++.+.+... .+.+++++.
T Consensus 380 Ll~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 380 LLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred eeeccCCCCccccccccceehhc
Confidence 998876432 344555543
No 301
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.68 E-value=5.2e-08 Score=62.46 Aligned_cols=38 Identities=39% Similarity=0.910 Sum_probs=36.0
Q ss_pred ceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEe
Q 008467 390 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 427 (564)
Q Consensus 390 ~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd 427 (564)
+++.++.+|.+.|++++|+|++.+|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999999999999999997
No 302
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.66 E-value=9.5e-06 Score=72.69 Aligned_cols=228 Identities=15% Similarity=0.098 Sum_probs=144.1
Q ss_pred CCEEEEEeCCCeEEEEECCCc--eeEeecCCCCCEEEEEeC-CCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEE
Q 008467 287 GTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWN-KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 363 (564)
Q Consensus 287 g~~l~sg~~dg~i~vw~~~~~--~~~~~~~h~~~V~~l~~~-~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 363 (564)
.-+|+.|+..|...+|..... .......|...|+-++=. ...-.+..++.|.++++.++..+..........-.+..
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 457899999999999986532 233334454444322211 11234677889999999988765544333222222556
Q ss_pred EEcCCCceEEEE-eCCCeEEEEEcCCCc--eeeEe-cCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeec--
Q 008467 364 VDWRNNVSFATS-STDNMIYVCKIGENR--PIKTF-AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL-- 437 (564)
Q Consensus 364 ~~~~~~~~~~~~-~~d~~i~~~~~~~~~--~~~~~-~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~-- 437 (564)
+...++..+.++ +....|+.|.++... .+++. ...+..--+..|+.....+|+++.||++.|||++........
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 666777666554 555678888776532 23322 223334557889999999999999999999999876543221
Q ss_pred ---ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe-------CCC-CCEEEEEEcCCCCE
Q 008467 438 ---REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-------GHR-EPVYSLAFSPTGEY 506 (564)
Q Consensus 438 ---~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~h~-~~i~~~~~spdg~~ 506 (564)
..|.+.+..+.|+|.|.. .+++.+ -.-+.+.+-|+++++....+. .|. ..|....|+.++.-
T Consensus 244 strp~hnGa~R~c~Fsl~g~l------DLLf~s-Ehfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s 316 (344)
T KOG4532|consen 244 STRPHHNGAFRVCRFSLYGLL------DLLFIS-EHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENES 316 (344)
T ss_pred ccCCCCCCceEEEEecCCCcc------eEEEEe-cCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcc
Confidence 247889999999986642 234444 345789999999887654432 122 23777788887766
Q ss_pred EEEEeCCCcEEEEeCC
Q 008467 507 LASGSLDKSMHIWSLK 522 (564)
Q Consensus 507 lasgs~dg~i~iw~~~ 522 (564)
+.+.+.+. +.-|++.
T Consensus 317 ~~v~~e~~-~ae~ni~ 331 (344)
T KOG4532|consen 317 NDVKNELQ-GAEYNIL 331 (344)
T ss_pred cccccchh-hheeecc
Confidence 66555543 4445543
No 303
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.65 E-value=7.3e-07 Score=92.27 Aligned_cols=183 Identities=17% Similarity=0.258 Sum_probs=136.9
Q ss_pred CCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEE
Q 008467 327 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVK 406 (564)
Q Consensus 327 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~ 406 (564)
++..++-|+....+..+|+++.+..+......+.+.-+. .++..+.++...|+|.+-|..+.+++.+|..|++.|..+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR-~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR-YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE-ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 345678888888899999999887776666554444333 3455677788999999999999999999999999997765
Q ss_pred ECCCCCEEEEEeCC---------CcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEE
Q 008467 407 WDPTGSLLASCSDD---------VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 477 (564)
Q Consensus 407 ~~~~~~~las~s~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iw 477 (564)
. .|++|+||+.. ..|+|||++..+.+.-+..+.++ .-++|.|.-. ..++.+|..|...+-
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~--------t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLT--------TRLAVTSQSGQFQFV 293 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhccccc--------ceEEEEecccceeec
Confidence 4 68999999864 45799999987766555555444 4456666543 257788888999998
Q ss_pred eCC---CC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467 478 DVE---LG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 521 (564)
Q Consensus 478 d~~---~~-~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~ 521 (564)
|.. +. .-++.+......+..+.+|++|+.||.|..+|.|.+|.-
T Consensus 294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 832 22 112333334455999999999999999999999999984
No 304
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=5.3e-07 Score=86.12 Aligned_cols=237 Identities=18% Similarity=0.235 Sum_probs=155.5
Q ss_pred CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC---cceeEEEeecccCeEEEEcC-CCceEEEEeC-CCeEEEEEcCCC
Q 008467 315 HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT---EEWKQQFEFHSGPTLDVDWR-NNVSFATSST-DNMIYVCKIGEN 389 (564)
Q Consensus 315 h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-d~~i~~~~~~~~ 389 (564)
|...|+.+. -...+++++++.||.++.|-... -+.+..+..|.+.+..+.-. +...+.+.+. |..++++++.+-
T Consensus 8 hrd~i~hv~-~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVF-PTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEe-eehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 666676654 33467999999999999996533 23445556666666555543 3345566555 888998887653
Q ss_pred ceee--EecCCCcceEEEEECCC-C-CEE-EEEeCCCcEEEEeCCCCee--eeecccccccEEEEEEccCCCCCCCCCCc
Q 008467 390 RPIK--TFAGHQGEVNCVKWDPT-G-SLL-ASCSDDVTAKIWNMKQDKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQ 462 (564)
Q Consensus 390 ~~~~--~~~~h~~~i~~v~~~~~-~-~~l-as~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~i~~~p~~~~~~~~~~~ 462 (564)
..+. .+.--.+.+.++ .++. - .+| ++.-+++.+.++|-....+ ...-.-|..+|..+.+.|.+.
T Consensus 87 DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-------- 157 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-------- 157 (558)
T ss_pred chhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc--------
Confidence 2211 111111122211 1221 1 133 3444688999999776543 223345899999999999875
Q ss_pred EEEEEEeCCCeEEEEeCCC------CeEEEEEe---------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 008467 463 LILASASFDSTVKLWDVEL------GKLLYSLN---------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV 527 (564)
Q Consensus 463 ~~l~s~s~dg~i~iwd~~~------~~~~~~~~---------~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~ 527 (564)
.++|....|-|.-|...- .+..+.++ .......++.|+|+|..+++-+.|..|+++..++|+++
T Consensus 158 -s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 158 -SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred -ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 466777789999998762 22222222 22345689999999999999999999999999999987
Q ss_pred EEEecC----------------------------------CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 528 KTYTGN----------------------------------GGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 528 ~~~~~~----------------------------------~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
+.++.. ..-..++|+..|++|..+.-=| |.|+|+.
T Consensus 237 qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~ 305 (558)
T KOG0882|consen 237 QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLD 305 (558)
T ss_pred hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEee
Confidence 665310 1124688999999999986654 7777763
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.61 E-value=3e-05 Score=72.76 Aligned_cols=213 Identities=15% Similarity=0.139 Sum_probs=132.6
Q ss_pred CCcEEEEECCCcceeEEEeecc--cCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEE
Q 008467 337 DKTAIVWDVKTEEWKQQFEFHS--GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL 414 (564)
Q Consensus 337 D~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l 414 (564)
+++|..||+++++.+-...... ..........+..+.+++.++.++.++..+++.+-.+.. .+.+.... ...+..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccccc
Confidence 6889999999998777765522 222221232445555568999999999988887766553 22211111 1134556
Q ss_pred EEEeCCCcEEEEeCCCCeeeeec-ccccc---cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC
Q 008467 415 ASCSDDVTAKIWNMKQDKYVHDL-REHSK---EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG 490 (564)
Q Consensus 415 as~s~dg~i~iwd~~~~~~~~~~-~~~~~---~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 490 (564)
+.++.++.+..+|..+++.+..+ ..... ..........+. .++.+..++.|..+|+++|+.+.....
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGD---------RLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETT---------EEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred ccccceeeeEecccCCcceeeeeccccccccccccccCceEecC---------EEEEEeccCcEEEEecCCCcEEEEeec
Confidence 67778889999999999887663 22110 001111111111 466677799999999999999988866
Q ss_pred CCCC----------EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467 491 HREP----------VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVL 560 (564)
Q Consensus 491 h~~~----------i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~ 560 (564)
...+ +..-....++ .+..++.++.+..+|+.+|+.+.... ...+.. ....++..|.++..++.+..|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~-~~~~~~~~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 151 GEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYS-LPSVDGGTLYVTSSDGRLYAL 227 (238)
T ss_dssp STT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS-ECE-CEECCCTEEEEEETTTEEEEE
T ss_pred CCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCCccC-CceeeCCEEEEEeCCCEEEEE
Confidence 4322 1222222345 77777777754444999999765333 333333 245778888888789999999
Q ss_pred Eee
Q 008467 561 DFR 563 (564)
Q Consensus 561 ~~~ 563 (564)
|++
T Consensus 228 d~~ 230 (238)
T PF13360_consen 228 DLK 230 (238)
T ss_dssp ETT
T ss_pred ECC
Confidence 975
No 306
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.61 E-value=1.8e-05 Score=72.06 Aligned_cols=188 Identities=22% Similarity=0.323 Sum_probs=106.9
Q ss_pred EEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC------CCEEEEE
Q 008467 220 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE------GTLLATG 293 (564)
Q Consensus 220 ~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~------g~~l~sg 293 (564)
.-++||||+.+||.+...|+|+++|+..... ..+.........-+..|-.|.|-.- ...|++-
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-----------f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi 115 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-----------FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVI 115 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEeccccee-----------EEcCcccccCCccccceeeeEeeccccccccceeEEEE
Confidence 4689999999999999999999999864321 0111000001112344555555321 1235556
Q ss_pred eCCCeEEEEECC----C--ceeEe--e-cCCCCCEEEEEeCCCCCEEEEeeCCCc-----------EEEEECCCcceeEE
Q 008467 294 SYDGQARIWSTN----G--DLKCT--L-SKHKGPIFSLKWNKKGDYLLTGSCDKT-----------AIVWDVKTEEWKQQ 353 (564)
Q Consensus 294 ~~dg~i~vw~~~----~--~~~~~--~-~~h~~~V~~l~~~~~~~~l~s~s~D~~-----------v~iwd~~~~~~~~~ 353 (564)
.++|.++=|-+. . ..... + ..+...|.++.|+|..+.|+.|+.... +..|-+-.+.
T Consensus 116 ~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~---- 191 (282)
T PF15492_consen 116 NYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDS---- 191 (282)
T ss_pred eccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCC----
Confidence 677877766431 1 12222 2 235778999999999888877765322 2223221111
Q ss_pred EeecccCeEEEEcCCCceEEEEeCCCeE------EEEEcCCCceeeEe---cCCCcceEEEEECCCCCEEEEEeCCCcEE
Q 008467 354 FEFHSGPTLDVDWRNNVSFATSSTDNMI------YVCKIGENRPIKTF---AGHQGEVNCVKWDPTGSLLASCSDDVTAK 424 (564)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i------~~~~~~~~~~~~~~---~~h~~~i~~v~~~~~~~~las~s~dg~i~ 424 (564)
+....+....+... .++.+.. .+.| ......|-.+..||||++||+.+.+|.|.
T Consensus 192 --------------Pyyk~v~~~~~~~~~~~~~~~~~~~~~---~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~ls 254 (282)
T PF15492_consen 192 --------------PYYKQVTSSEDDITASSKRRGLLRIPS---FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLS 254 (282)
T ss_pred --------------CcEEEccccCccccccccccceeeccc---eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEE
Confidence 01111112211111 1122211 1112 12345688999999999999999999999
Q ss_pred EEeCCCCeeeeeccc
Q 008467 425 IWNMKQDKYVHDLRE 439 (564)
Q Consensus 425 iwd~~~~~~~~~~~~ 439 (564)
+|++-+-++......
T Consensus 255 LW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 255 LWEIPSLRLQRSWKQ 269 (282)
T ss_pred EEecCcchhhcccch
Confidence 999877665554443
No 307
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=2.6e-07 Score=85.33 Aligned_cols=156 Identities=13% Similarity=0.274 Sum_probs=120.0
Q ss_pred EECCC--CCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc----ceeEEEe
Q 008467 282 DWNGE--GTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE----EWKQQFE 355 (564)
Q Consensus 282 ~~s~~--g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~----~~~~~~~ 355 (564)
+|+-+ |-. ++.+.+-.|-+-++.+.....|. .++.|+++.|...++.+..|...|.|..+|++.+ .+..+..
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl 295 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL 295 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE
Confidence 66642 333 45566677778787777666665 6788999999999999999999999999999876 5555666
Q ss_pred ecccCeEEEEcC--CCceEEEEeCCCeEEEEEcCCCce---eeEecCCCcceEE--EEECCCCCEEEEEeCCCcEEEEeC
Q 008467 356 FHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRP---IKTFAGHQGEVNC--VKWDPTGSLLASCSDDVTAKIWNM 428 (564)
Q Consensus 356 ~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~---~~~~~~h~~~i~~--v~~~~~~~~las~s~dg~i~iwd~ 428 (564)
.|...+.++.-. .+..+++++.+|.|.+||.+-.+. +..+.||.+.-.- +-.++....++++++|...|||.+
T Consensus 296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl 375 (425)
T KOG2695|consen 296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSL 375 (425)
T ss_pred EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEec
Confidence 677777666542 456788899999999999987665 8999999664332 344667788899999999999999
Q ss_pred CCCeeeeeccc
Q 008467 429 KQDKYVHDLRE 439 (564)
Q Consensus 429 ~~~~~~~~~~~ 439 (564)
+.+..+.++..
T Consensus 376 ~~ghLl~tipf 386 (425)
T KOG2695|consen 376 DSGHLLCTIPF 386 (425)
T ss_pred ccCceeeccCC
Confidence 98887766543
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=3.6e-06 Score=86.31 Aligned_cols=176 Identities=19% Similarity=0.266 Sum_probs=121.8
Q ss_pred CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEE
Q 008467 369 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 448 (564)
Q Consensus 369 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~ 448 (564)
+..|+.++-+|.+++.+..... .+...|... +.+|.+++|||+||+|.|-.+.+.+..+.+. ...++.+|+
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksia 119 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIA 119 (846)
T ss_pred cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEE
Confidence 4456777778888887765442 222233332 5689999999999999999988776655443 346889999
Q ss_pred EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-C-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 008467 449 WSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-G-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 526 (564)
Q Consensus 449 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~-~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~ 526 (564)
++|+-.. .+...+++|+.-| +.++.-.= | +.-..+....++|.+++|. |.+||-++.+| |+|||+.+++.
T Consensus 120 l~Pd~~~----~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~ 191 (846)
T KOG2066|consen 120 LHPDFSR----QQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQR 191 (846)
T ss_pred eccchhh----hhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccce
Confidence 9998321 1123578899888 66664220 1 1111344556899999995 78999999999 99999999887
Q ss_pred EEEEecCC-------CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 527 VKTYTGNG-------GIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 527 ~~~~~~~~-------~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
+...+... -...+.|.++. .|+.|.++ +|.|..+|
T Consensus 192 l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 192 LTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-SVKICSIK 233 (846)
T ss_pred eeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-eEEEEEEe
Confidence 76654322 13579997664 67778666 78887776
No 309
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.54 E-value=1.5e-06 Score=88.53 Aligned_cols=159 Identities=19% Similarity=0.341 Sum_probs=125.3
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCC--CCC-CCcEEEEEEeCCCeEEEE
Q 008467 401 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGT--NNP-NQQLILASASFDSTVKLW 477 (564)
Q Consensus 401 ~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~--~~~-~~~~~l~s~s~dg~i~iw 477 (564)
.-.++.|+|.| +||-|+.. .|.+-|..+-+.+..+.-|...|+.++|.|..... .+| ..+++||++...|.|-+|
T Consensus 17 N~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 36678999865 56666654 68888999999999999999999999999875432 222 256789999999999999
Q ss_pred eCCCCeEEEEEeCCCCCEEEEEEcC---CC-CEEEEEeCCCcEEEEeCCCCeEEEEEecCCCE-EEEEEcc-CCCEEEEE
Q 008467 478 DVELGKLLYSLNGHREPVYSLAFSP---TG-EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI-FEVCWNK-EGDKIAAC 551 (564)
Q Consensus 478 d~~~~~~~~~~~~h~~~i~~~~~sp---dg-~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i-~~~~w~~-~g~~la~~ 551 (564)
|...+..+..+..|..+|..++|-| +. .+|++-....+|.+|+..+|+.+..++....| .++.++| |.+++.+-
T Consensus 95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l 174 (1062)
T KOG1912|consen 95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVL 174 (1062)
T ss_pred EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEE
Confidence 9999988888998999999998865 34 56666677789999999999999888765555 4588888 66777777
Q ss_pred EcCCcEEEEE
Q 008467 552 FANHTVCVLD 561 (564)
Q Consensus 552 ~~~~~v~v~~ 561 (564)
+..|.|.+.+
T Consensus 175 ~s~g~vl~~~ 184 (1062)
T KOG1912|consen 175 GSKGFVLSCK 184 (1062)
T ss_pred ccCceEEEEe
Confidence 6777665544
No 310
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=9.6e-06 Score=83.48 Aligned_cols=107 Identities=25% Similarity=0.432 Sum_probs=81.9
Q ss_pred EEEECCCCCEEEEEE----CCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467 221 ACAWSPAGSLLASGS----GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 296 (564)
Q Consensus 221 ~~~~sp~~~~lasgs----~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 296 (564)
-.+|||...+||.++ .-|.+.||- .+|.... + ....-.+++++|+|..-.|+.|-.-
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr-------------~-----Vt~P~hatSLCWHpe~~vLa~gwe~ 80 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR-------------D-----VTYPVHATSLCWHPEEFVLAQGWEM 80 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc-------------c-----cccceehhhhccChHHHHHhhcccc
Confidence 467999999988876 346777773 2332110 0 0011236789999999999999999
Q ss_pred CeEEEEECCCceeEe-ecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC
Q 008467 297 GQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK 346 (564)
Q Consensus 297 g~i~vw~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~ 346 (564)
|.+.+|..+.....+ ...|+.+|..+.||++|+.++|+..-|.|.+|...
T Consensus 81 g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 81 GVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 999999987665544 45799999999999999999999999999999654
No 311
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.50 E-value=5.3e-06 Score=73.96 Aligned_cols=164 Identities=15% Similarity=0.176 Sum_probs=98.5
Q ss_pred EeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc-eeEEEeecccCeEEEEcCCCceEEEEeCCC------eEE
Q 008467 310 CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSSTDN------MIY 382 (564)
Q Consensus 310 ~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~------~i~ 382 (564)
..+..|+++-.+-..+--++.++++..||.+.+.+.+.-. ...+.........+........++.++.=+ ..+
T Consensus 83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~ 162 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFY 162 (319)
T ss_pred eeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecccee
Confidence 3444565544333445557789999999999999876411 111111111111112222222333333222 234
Q ss_pred EEEcCCCceeeEecCCCcceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCee-eeecccccccEEEEEEccCCCCCCCCC
Q 008467 383 VCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKY-VHDLREHSKEIYTIRWSPTGSGTNNPN 460 (564)
Q Consensus 383 ~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~las~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~i~~~p~~~~~~~~~ 460 (564)
.|+++..+....-.-....|.+++-+|.. .++++|++||.+-+||++.... +..+..|..+|..+.|+|....
T Consensus 163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~----- 237 (319)
T KOG4714|consen 163 ANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPE----- 237 (319)
T ss_pred eecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCch-----
Confidence 44443322111111112348889988865 4577888999999999987644 4557789999999999987532
Q ss_pred CcEEEEEEeCCCeEEEEeCCC
Q 008467 461 QQLILASASFDSTVKLWDVEL 481 (564)
Q Consensus 461 ~~~~l~s~s~dg~i~iwd~~~ 481 (564)
.|++++.||.+--||..+
T Consensus 238 ---~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 238 ---HLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ---heeEecCCCcEEEEcCCC
Confidence 478999999999999764
No 312
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.50 E-value=0.00039 Score=65.52 Aligned_cols=243 Identities=16% Similarity=0.134 Sum_probs=140.0
Q ss_pred eEEEEECCC-CCEEEEEECCC-cEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC-
Q 008467 219 VCACAWSPA-GSLLASGSGDS-TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY- 295 (564)
Q Consensus 219 V~~~~~sp~-~~~lasgs~D~-~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~- 295 (564)
...++.+|. +..+|.+-.-| .+.+||..++......... .-+++-+ --.||+||++|.+.-.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~-----~gRHFyG----------Hg~fs~dG~~LytTEnd 71 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP-----PGRHFYG----------HGVFSPDGRLLYTTEND 71 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC-----CCCEEec----------CEEEcCCCCEEEEeccc
Confidence 346788884 56777777665 4678998776532111000 0112212 2379999999998744
Q ss_pred ----CCeEEEEECCCc--eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCC
Q 008467 296 ----DGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN 369 (564)
Q Consensus 296 ----dg~i~vw~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (564)
.|.|-|||.... ....+..|.-.-..+.+.|+|..|+.+.. -|.- ...++..+
T Consensus 72 ~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANG--GI~T-hpd~GR~k------------------ 130 (305)
T PF07433_consen 72 YETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANG--GIET-HPDSGRAK------------------ 130 (305)
T ss_pred cCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcC--CCcc-CcccCcee------------------
Confidence 389999998843 33456666655577889999987776532 1110 00111100
Q ss_pred ceEEEEeCCCeEEEEEcCCCceeeE--e--cCCCcceEEEEECCCCCEEEEEeCCCc-------EEEEeCCCCeeeeec-
Q 008467 370 VSFATSSTDNMIYVCKIGENRPIKT--F--AGHQGEVNCVKWDPTGSLLASCSDDVT-------AKIWNMKQDKYVHDL- 437 (564)
Q Consensus 370 ~~~~~~~~d~~i~~~~~~~~~~~~~--~--~~h~~~i~~v~~~~~~~~las~s~dg~-------i~iwd~~~~~~~~~~- 437 (564)
+-...++-.+...+..++..+.. + .-|...|.-++++++|..++.+-..|. +-+++.. ..+..+
T Consensus 131 --LNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~ 206 (305)
T PF07433_consen 131 --LNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLP 206 (305)
T ss_pred --cChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--Ccceecc
Confidence 00011122222333333333332 3 236667888888888776665554442 2233322 211111
Q ss_pred ------ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 008467 438 ------REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS 511 (564)
Q Consensus 438 ------~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs 511 (564)
..-.+.+-+|++++++. .+.+|+=.-+.+.+||..+++.+....- ..+..++-.+++ |++|.+
T Consensus 207 ~p~~~~~~l~~Y~gSIa~~~~g~--------~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 207 APEEQWRRLNGYIGSIAADRDGR--------LIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSG 275 (305)
T ss_pred CChHHHHhhCCceEEEEEeCCCC--------EEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCC
Confidence 22345688999988764 4667777889999999999998866542 246777777777 666654
Q ss_pred C
Q 008467 512 L 512 (564)
Q Consensus 512 ~ 512 (564)
.
T Consensus 276 ~ 276 (305)
T PF07433_consen 276 Q 276 (305)
T ss_pred C
Confidence 3
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.47 E-value=0.00025 Score=76.61 Aligned_cols=235 Identities=17% Similarity=0.257 Sum_probs=131.6
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467 217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 296 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 296 (564)
+.|.++.|.-++.-++.+..+|.|.+-|..+.... .. ......|.+++||||+..++..+..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-----------iv-------g~vd~GI~aaswS~Dee~l~liT~~ 130 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-----------IV-------GNVDNGISAASWSPDEELLALITGR 130 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-----------ee-------eeccCceEEEeecCCCcEEEEEeCC
Confidence 57889999999988888889999998876653210 00 1124679999999999999999998
Q ss_pred CeEEEEECCCceeEeec-----CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC-cceeEEEeecccCeEEEEcCCCc
Q 008467 297 GQARIWSTNGDLKCTLS-----KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQQFEFHSGPTLDVDWRNNV 370 (564)
Q Consensus 297 g~i~vw~~~~~~~~~~~-----~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 370 (564)
+++.+-+.+-.+...-. .-.+....+-|-...++|= |+. |....-+... .+...... ....-..+.|+++.
T Consensus 131 ~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfr-gs~-gr~~~~~~~~~ek~~~~~~-~~~~~~~IsWRgDg 207 (1265)
T KOG1920|consen 131 QTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFR-GSE-GRQAARQKIEKEKALEQIE-QDDHKTSISWRGDG 207 (1265)
T ss_pred cEEEEEeccccchhccccccccccccccceecccccceeee-cch-hhhcccccccccccccchh-hccCCceEEEccCC
Confidence 88887664322211110 0112223344444333321 111 1111111000 00000000 11122458899887
Q ss_pred e-EEEE----eCC-CeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe---CCCcEEEEeCCC---Ceeeeecc
Q 008467 371 S-FATS----STD-NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS---DDVTAKIWNMKQ---DKYVHDLR 438 (564)
Q Consensus 371 ~-~~~~----~~d-~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s---~dg~i~iwd~~~---~~~~~~~~ 438 (564)
. |+++ ..+ ..|++|+.. +..-.+-..-.+.-.+++|-|.|.++|+-. +|+.|.++.-+. +..+..+.
T Consensus 208 ~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p 286 (1265)
T KOG1920|consen 208 EYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP 286 (1265)
T ss_pred cEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCc
Confidence 4 4442 344 789999876 221111111123345799999999998753 356788887432 22222223
Q ss_pred cccccEEEEEEccCCCCCCCCCCcEEEEE---EeCCCeEEEEeCCCC
Q 008467 439 EHSKEIYTIRWSPTGSGTNNPNQQLILAS---ASFDSTVKLWDVELG 482 (564)
Q Consensus 439 ~~~~~i~~i~~~p~~~~~~~~~~~~~l~s---~s~dg~i~iwd~~~~ 482 (564)
....+|..++|+.++. +||. ......|++|-+.+-
T Consensus 287 ~de~~ve~L~Wns~sd---------iLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 287 LDEKEVEELAWNSNSD---------ILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ccccchheeeecCCCC---------ceeeeecccccceEEEEEecCe
Confidence 3334589999988765 4554 344445999987653
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=2.2e-05 Score=80.75 Aligned_cols=177 Identities=16% Similarity=0.370 Sum_probs=122.8
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeec
Q 008467 278 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 357 (564)
Q Consensus 278 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 357 (564)
++|++++ +++|+-|+-+|.+++.+.++.. .+...|... ..+|.+++|||.||+|.|-.+-+.+...++.++
T Consensus 42 is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~ 112 (846)
T KOG2066|consen 42 ISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK 112 (846)
T ss_pred HHHHHhh--cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecC
Confidence 4444443 5789999999999999998877 444445544 668999999999999999998887766666554
Q ss_pred ccCeEEEEcCCC------ceEEEEeCCCeEEEEEcC---CCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeC
Q 008467 358 SGPTLDVDWRNN------VSFATSSTDNMIYVCKIG---ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM 428 (564)
Q Consensus 358 ~~~~~~~~~~~~------~~~~~~~~d~~i~~~~~~---~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~ 428 (564)
. ++..+...++ ..|++++..| +.++.-. ...++ .+..-.|.|.++.|. |+++|-++++| |++||.
T Consensus 113 r-piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~ 186 (846)
T KOG2066|consen 113 R-PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDT 186 (846)
T ss_pred C-cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcEEEEecCCC-cEEEec
Confidence 4 3444444433 5788888888 6555322 22222 345557899999996 88999998887 899999
Q ss_pred CCCeeeeecccccccE------EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC
Q 008467 429 KQDKYVHDLREHSKEI------YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 480 (564)
Q Consensus 429 ~~~~~~~~~~~~~~~i------~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 480 (564)
.+++.+..+......+ ..+.|.+.. .|+-| .-.+|+|..++
T Consensus 187 ~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~----------~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 187 PTRQRLTNIPPPSQSVRPELFPPHLHWQDED----------RLVIG-WGDSVKICSIK 233 (846)
T ss_pred cccceeeccCCCCCCCCcccCCCceEecCCC----------eEEEe-cCCeEEEEEEe
Confidence 9888776665433322 335565543 24434 55688888887
No 315
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.42 E-value=4.7e-06 Score=74.32 Aligned_cols=161 Identities=14% Similarity=0.192 Sum_probs=94.3
Q ss_pred CCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEE
Q 008467 214 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 293 (564)
Q Consensus 214 ~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg 293 (564)
.|+.+-.+-+.+--++.+++|..||.+.+.+...-.. ........+..--+.+.-..++++.++
T Consensus 87 ~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~----------------~~~~i~~~~~~~as~~~~~~~~~i~s~ 150 (319)
T KOG4714|consen 87 KNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLA----------------LMSRIPSIHSGSASRKICRHGNSILSG 150 (319)
T ss_pred ccCCCCCcccccccCCceEecCCCceEEEEechHHHh----------------hhhhcccccccccccceeecccEEecC
Confidence 3443333334445577889999999999988643100 000000000001111222234444443
Q ss_pred eC-----CCeEEEEECCCceeEe-ecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc
Q 008467 294 SY-----DGQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 366 (564)
Q Consensus 294 ~~-----dg~i~vw~~~~~~~~~-~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 366 (564)
.. -+..++|+........ -..-...|.+++-+|..+ .+++|+.||.+-+||.+...
T Consensus 151 ~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~----------------- 213 (319)
T KOG4714|consen 151 GCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA----------------- 213 (319)
T ss_pred CcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc-----------------
Confidence 21 1234455543221110 011123488898888665 46678889999999987642
Q ss_pred CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC-CCEEEEEeCCCcEEEEeCCC
Q 008467 367 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQ 430 (564)
Q Consensus 367 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~-~~~las~s~dg~i~iwd~~~ 430 (564)
.|+..+..|..+|+.+-|+|. +..|++|++||.+.-||..+
T Consensus 214 -----------------------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 214 -----------------------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred -----------------------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 244557789999999999994 56799999999999999764
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=7e-05 Score=71.07 Aligned_cols=244 Identities=14% Similarity=0.135 Sum_probs=132.3
Q ss_pred cCCCCeEEEEECCCCC-EEEEEeCCCeEEEEECCCcee-EeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCcc
Q 008467 273 EKSKDVTTLDWNGEGT-LLATGSYDGQARIWSTNGDLK-CTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEE 349 (564)
Q Consensus 273 ~~~~~V~~l~~s~~g~-~l~sg~~dg~i~vw~~~~~~~-~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~ 349 (564)
.+...|..++|||..+ ++..++.+..|+|.|...... ..+..| .++++++|.-+. ++|+.|-..|.|.|||++..+
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 4556799999999877 788999999999999876543 345555 889999998765 568899999999999997543
Q ss_pred e-eEEE--eecccCeEEEEcCCCc-------eEEEEeCCCeEEEEEc--CCCceeeEe-cCCCcceEEEEECCCCCE-EE
Q 008467 350 W-KQQF--EFHSGPTLDVDWRNNV-------SFATSSTDNMIYVCKI--GENRPIKTF-AGHQGEVNCVKWDPTGSL-LA 415 (564)
Q Consensus 350 ~-~~~~--~~~~~~~~~~~~~~~~-------~~~~~~~d~~i~~~~~--~~~~~~~~~-~~h~~~i~~v~~~~~~~~-la 415 (564)
- ...+ +....++..+...... .++....+- ..|.+ ..+.+..++ .+..+...++++++..+. |+
T Consensus 270 ~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l--~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~ 347 (463)
T KOG1645|consen 270 GPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVL--QFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLL 347 (463)
T ss_pred chHhhhhhhhccCcceeecccCccccccccceEEeeehhh--hhhhhhccccCCCcccccCCCcceeeeeecCccceEEE
Confidence 1 1111 1122344444432211 112222211 12222 111111111 112334445555554443 33
Q ss_pred EEeCCCc---EE---E-EeCCCCeeeeecc-cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEE
Q 008467 416 SCSDDVT---AK---I-WNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS 487 (564)
Q Consensus 416 s~s~dg~---i~---i-wd~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 487 (564)
|.-.+-. ++ . -|...+.++..-+ .+.+. +.-..+........++...++..+...+.+.+||+.+.+.+.+
T Consensus 348 tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs-~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~ 426 (463)
T KOG1645|consen 348 TYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGS-KQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQT 426 (463)
T ss_pred EecCCCCCccceeeeeeeccccCceeeeecccccCC-cccccccccceeccccccEEEEecCCcceeEEeccchhheeee
Confidence 3332210 00 0 0111222221111 11000 0000000000011223345677788889999999999999988
Q ss_pred EeCCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEeCC
Q 008467 488 LNGHREPVYSLAFSPT--GEYLASGSLDKSMHIWSLK 522 (564)
Q Consensus 488 ~~~h~~~i~~~~~spd--g~~lasgs~dg~i~iw~~~ 522 (564)
+.- ..+|.+++.... +.||++-..| .++||..+
T Consensus 427 l~~-~epv~Dicp~~~n~~syLa~LTd~-~v~Iyk~e 461 (463)
T KOG1645|consen 427 LAL-SEPVLDICPNDTNGSSYLALLTDD-RVHIYKNE 461 (463)
T ss_pred ccc-CcceeecceeecCCcchhhheecc-eEEEEecC
Confidence 863 478998876543 4577766644 58888654
No 317
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.42 E-value=7.5e-05 Score=76.71 Aligned_cols=171 Identities=11% Similarity=0.150 Sum_probs=101.9
Q ss_pred eEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCC
Q 008467 380 MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNP 459 (564)
Q Consensus 380 ~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~ 459 (564)
.+.+.|..+.+...+..- .+....++++|+|+++++.+.+. ..+..+..+...... ..+.|.+.+.....+
T Consensus 216 ~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNs-------E~G~tl~em~a~e~d-~~vvfni~~iea~vk 286 (635)
T PRK02888 216 LFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNS-------EEGVTLAEMMAAERD-WVVVFNIARIEEAVK 286 (635)
T ss_pred EEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCc-------ccCcceeeeccccCc-eEEEEchHHHHHhhh
Confidence 344455544333332221 11334578899999987776321 111112222111111 334444332111122
Q ss_pred CCcEEEEEEeCCCeEEEEeCCC----C-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCe--------
Q 008467 460 NQQLILASASFDSTVKLWDVEL----G-KLLYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGK-------- 525 (564)
Q Consensus 460 ~~~~~l~s~s~dg~i~iwd~~~----~-~~~~~~~~h~~~i~~~~~spdg~~lasgs-~dg~i~iw~~~~~~-------- 525 (564)
+.+...+ .++.|.+.|.++ + +.+..+. -......+.+||||+++++++ .+.+|.|.|+.+.+
T Consensus 287 dGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 287 AGKFKTI---GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred CCCEEEE---CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 2333333 267899999998 3 4444444 334568899999999987655 58999999998754
Q ss_pred ----EEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 526 ----IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 526 ----~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
++....-.-+....+|+++|+...+.+.|..|+.||+.
T Consensus 363 ~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 363 PRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred ccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehH
Confidence 24444434456789999999988899999999999964
No 318
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.39 E-value=8e-05 Score=75.75 Aligned_cols=146 Identities=15% Similarity=0.251 Sum_probs=101.6
Q ss_pred CccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 008467 215 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 294 (564)
Q Consensus 215 h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~ 294 (564)
|...|.-.+++..+++++.|+.-|.+.+|+-..+.... ... ......+.....|++..++|.|+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~------------~~~----~~~~~~~~~~~vs~~e~lvAagt 95 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK------------LKN----EGATGITCVRSVSSVEYLVAAGT 95 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhc------------ccc----cCccceEEEEEecchhHhhhhhc
Confidence 34456666788889999999999999999866543211 000 01234466678899999999999
Q ss_pred CCCeEEEEECCCc----eeEee---cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc----eeEEEeecccCeEE
Q 008467 295 YDGQARIWSTNGD----LKCTL---SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE----WKQQFEFHSGPTLD 363 (564)
Q Consensus 295 ~dg~i~vw~~~~~----~~~~~---~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~----~~~~~~~~~~~~~~ 363 (564)
..|.|.|+..+.. +...- ..|+..|++++|++++..+++|..-|+|.+--+.+.. ..+.+....+.++.
T Consensus 96 ~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQ 175 (726)
T KOG3621|consen 96 ASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQ 175 (726)
T ss_pred CCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEE
Confidence 9999999975432 22111 2378899999999999999999999999998877621 12223334456777
Q ss_pred EEcCCCceEEEEe
Q 008467 364 VDWRNNVSFATSS 376 (564)
Q Consensus 364 ~~~~~~~~~~~~~ 376 (564)
++......+++..
T Consensus 176 lD~~q~~LLVStl 188 (726)
T KOG3621|consen 176 LDYLQSYLLVSTL 188 (726)
T ss_pred eecccceehHhhh
Confidence 7776665555443
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.00014 Score=75.65 Aligned_cols=212 Identities=11% Similarity=0.094 Sum_probs=134.4
Q ss_pred EECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCC-EEEEEeCCCCCEEEEeeCCC-----cEEEEECCCcceeEEEe
Q 008467 282 DWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGP-IFSLKWNKKGDYLLTGSCDK-----TAIVWDVKTEEWKQQFE 355 (564)
Q Consensus 282 ~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~-V~~l~~~~~~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~ 355 (564)
+|++.+..++.|+.+|.|.+.+..-.....+..+... |..+....+.++|++.+.|+ .++|||+..-+--.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~--- 106 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN--- 106 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC---
Confidence 5788999999999999999998776666777777777 55554333446788877765 48999986432000
Q ss_pred ecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC--Ce-
Q 008467 356 FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ--DK- 432 (564)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~--~~- 432 (564)
.|- .+ +..+++... +.....++.+++.+.+-+.+|.|-.+|.|.++.-+- .+
T Consensus 107 ---sP~-c~--------------~~~ri~~~~-------np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrg 161 (933)
T KOG2114|consen 107 ---SPQ-CL--------------YEHRIFTIK-------NPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRG 161 (933)
T ss_pred ---Ccc-ee--------------eeeeeeccC-------CCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccc
Confidence 000 00 001111110 111345688899999999999999999999885321 11
Q ss_pred -eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEEeCCCCCEEEEEEcCCCCEEEEE
Q 008467 433 -YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNGHREPVYSLAFSPTGEYLASG 510 (564)
Q Consensus 433 -~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~i~~~~~spdg~~lasg 510 (564)
...-...-..+|+.+.+..++.. .+.. .....|.+|.+....+ +..+..|..+.+|.+|++...-+++|
T Consensus 162 sr~~~~~~~~~pITgL~~~~d~~s--------~lFv-~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca 232 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRSDGKS--------VLFV-ATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA 232 (933)
T ss_pred cceeeeccCCCCceeeEEecCCce--------eEEE-EecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe
Confidence 11111223568999999877652 1222 2346799999883332 44577888899999999866634444
Q ss_pred eCCCcEEEEeCCCCeEEEEEe
Q 008467 511 SLDKSMHIWSLKEGKIVKTYT 531 (564)
Q Consensus 511 s~dg~i~iw~~~~~~~~~~~~ 531 (564)
+.. .|.+|+....++-.+|.
T Consensus 233 ~~e-~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 233 GSE-FLYFYDSDGRGPCFAFE 252 (933)
T ss_pred cCc-eEEEEcCCCcceeeeec
Confidence 434 48999987655544554
No 320
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.34 E-value=0.00039 Score=65.52 Aligned_cols=203 Identities=19% Similarity=0.259 Sum_probs=134.5
Q ss_pred EEEEeCCC-CCEEEEeeCCCc-EEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecC
Q 008467 320 FSLKWNKK-GDYLLTGSCDKT-AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG 397 (564)
Q Consensus 320 ~~l~~~~~-~~~l~s~s~D~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~ 397 (564)
..++.+|. ...++.+-.-|+ ..+||..+++....+.. .+-+.|.|
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a---------------------------------~~gRHFyG 54 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA---------------------------------PPGRHFYG 54 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC---------------------------------CCCCEEec
Confidence 45677884 445556666665 56788888775544321 11245667
Q ss_pred CCcceEEEEECCCCCEEEEEe-----CCCcEEEEeCC-CCeeeeecccccccEEEEEEccCCCC--------CCCCCC-c
Q 008467 398 HQGEVNCVKWDPTGSLLASCS-----DDVTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSG--------TNNPNQ-Q 462 (564)
Q Consensus 398 h~~~i~~v~~~~~~~~las~s-----~dg~i~iwd~~-~~~~~~~~~~~~~~i~~i~~~p~~~~--------~~~~~~-~ 462 (564)
| ..||+||++|++.= ..|.|-|||.. +-+.+.++..|.-.-..+.+.|++.. ..+|+. .
T Consensus 55 H------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR 128 (305)
T PF07433_consen 55 H------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGR 128 (305)
T ss_pred C------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCc
Confidence 7 56999999998753 35789999998 56667778777666677788888731 112221 2
Q ss_pred EEEEEEeCCCeEEEEeCCCCeEEEE--E--eCCCCCEEEEEEcCCCCEEEEEeCCCc-------EEEEeCCCCeEEEEEe
Q 008467 463 LILASASFDSTVKLWDVELGKLLYS--L--NGHREPVYSLAFSPTGEYLASGSLDKS-------MHIWSLKEGKIVKTYT 531 (564)
Q Consensus 463 ~~l~s~s~dg~i~iwd~~~~~~~~~--~--~~h~~~i~~~~~spdg~~lasgs~dg~-------i~iw~~~~~~~~~~~~ 531 (564)
.-|--..++.++.+.|..+|+.+.. + ..|...|..++++++|..++..-..|. |-+++ .++.+..+.
T Consensus 129 ~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~ 206 (305)
T PF07433_consen 129 AKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLP 206 (305)
T ss_pred eecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceecc
Confidence 2344455677888888899988765 4 347788999999999998887655442 33333 233333332
Q ss_pred c--------CCCEEEEEEccCCCEEEEEEc-CCcEEEEEee
Q 008467 532 G--------NGGIFEVCWNKEGDKIAACFA-NHTVCVLDFR 563 (564)
Q Consensus 532 ~--------~~~i~~~~w~~~g~~la~~~~-~~~v~v~~~~ 563 (564)
. .+-+-+|+++++|..+|+.+- .+.+.|||..
T Consensus 207 ~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~ 247 (305)
T PF07433_consen 207 APEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAA 247 (305)
T ss_pred CChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECC
Confidence 2 345789999999998876654 5678899753
No 321
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.33 E-value=0.0002 Score=72.80 Aligned_cols=258 Identities=9% Similarity=0.037 Sum_probs=144.1
Q ss_pred CCEEEEEeCCCeEEEEECC-CceeEeecCCC---------C-CEE-EEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467 287 GTLLATGSYDGQARIWSTN-GDLKCTLSKHK---------G-PIF-SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 354 (564)
Q Consensus 287 g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~---------~-~V~-~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 354 (564)
+..+++++.+|.+..+|.. |+......-.. . .+. .+. -.+..++.++.++.+..+|..+|+.+-..
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVT--VAGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccE--EECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 3455666666777777753 44443322111 0 000 011 13567788889999999999999876555
Q ss_pred eecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcce-----EEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008467 355 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV-----NCVKWDPTGSLLASCSDDVTAKIWNMK 429 (564)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i-----~~v~~~~~~~~las~s~dg~i~iwd~~ 429 (564)
..... +...-...+..++.+..++.++-+|..+++.+-.+......+ .+... .+..++.++.+|.+..+|..
T Consensus 147 ~~~~~-~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 147 KVAGE-ALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred cCCCc-eecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEcc
Confidence 43321 111000113345556778889988988887665543221100 01111 12346667788999888988
Q ss_pred CCeeeeecccccc----c---EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcC
Q 008467 430 QDKYVHDLREHSK----E---IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP 502 (564)
Q Consensus 430 ~~~~~~~~~~~~~----~---i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp 502 (564)
+++.+........ . ...+.-+|.- .++ .+..++.+|.+..+|..+|+.++...-. ....+. .
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v-----~~~--~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~--~ 292 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVV-----VGG--VVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFA--V 292 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEE-----ECC--EEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcE--E
Confidence 8776543321100 0 0001111100 011 3455678999999999999988765421 111222 2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCC-EEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 503 TGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGG-IFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 503 dg~~lasgs~dg~i~iw~~~~~~~~~~~~~-~~~-i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
++..|..++.+|.|..+|..+|+.+..... ... ..+... .+.+|.++..+|.+.++|.
T Consensus 293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINR 352 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEEC
Confidence 466777788999999999999987665432 111 111111 2556777778888887775
No 322
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.33 E-value=6e-07 Score=92.42 Aligned_cols=263 Identities=16% Similarity=0.218 Sum_probs=162.9
Q ss_pred eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
+..++.|+...+||+|+-+.+.|+.|+-.|.|+++++.+|.. .++.+.|...|+.+.=+.||.
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-----------------e~s~ncH~SavT~vePs~dgs 1156 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-----------------EESVNCHQSAVTLVEPSVDGS 1156 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc-----------------cccccccccccccccccCCcc
Confidence 456788999999999999999999999999999999987743 234456778899998888998
Q ss_pred EEEEEeCC-C-eEEEEECCC--ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeec-ccC---
Q 008467 289 LLATGSYD-G-QARIWSTNG--DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH-SGP--- 360 (564)
Q Consensus 289 ~l~sg~~d-g-~i~vw~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~~--- 360 (564)
.+++.+.- . ...+|+... ..+.++. .-.+++|+.....-+.|..-....+||+.|+....++... ...
T Consensus 1157 ~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~ 1232 (1516)
T KOG1832|consen 1157 TQLTSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYS 1232 (1516)
T ss_pred eeeeeccccCchHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhh
Confidence 77765443 3 567898653 3333333 2356888876544445555567899999998765553211 100
Q ss_pred eEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc
Q 008467 361 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 440 (564)
Q Consensus 361 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~ 440 (564)
-....|.+...++. .|| .+||++....+..|...+..+ .-.|+|.|.-++.-++ |||+++.+.++.+..-
T Consensus 1233 ~n~a~FsP~D~LIl--ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~L 1302 (1516)
T KOG1832|consen 1233 NNLAHFSPCDTLIL--NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSL 1302 (1516)
T ss_pred ccccccCCCcceEe--eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech-----hhhhHHHHHHhcCccc
Confidence 01112222222211 222 368888777777665444222 3458999999887764 8999998877665433
Q ss_pred cccEEEEEEccCCCCCC-------------CCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEE
Q 008467 441 SKEIYTIRWSPTGSGTN-------------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL 507 (564)
Q Consensus 441 ~~~i~~i~~~p~~~~~~-------------~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~l 507 (564)
.. ..+.|...|...- .+.-+.-|.+ ..|-+|...-+.+.++.. ..+|..++-+|...+|
T Consensus 1303 dq--c~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fS-----SFRTf~a~dYs~iaTi~v-~R~~~Dlct~~~D~~l 1374 (1516)
T KOG1832|consen 1303 DQ--CAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFS-----SFRTFDAIDYSDIATIPV-DRCLLDLCTEPTDSFL 1374 (1516)
T ss_pred cc--eEEEeccCccchhhhhhhhhhhhhhcccccccchhh-----hhccccccccccceeeec-ccchhhhhcCCccceE
Confidence 32 4556665553100 0000000111 133445555555666654 3567888888888888
Q ss_pred EEE
Q 008467 508 ASG 510 (564)
Q Consensus 508 asg 510 (564)
+.-
T Consensus 1375 ~vI 1377 (1516)
T KOG1832|consen 1375 GVI 1377 (1516)
T ss_pred EEE
Confidence 764
No 323
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.31 E-value=1.6e-05 Score=82.74 Aligned_cols=178 Identities=16% Similarity=0.175 Sum_probs=127.1
Q ss_pred ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEE
Q 008467 370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 449 (564)
Q Consensus 370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~ 449 (564)
..++.++-...+..+|+...+..+...-..+.|.-++. +++++.+|...|+|.+-|.++.+.++++.+|++.|..+..
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv 225 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV 225 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence 34555555566666777666655544433434554544 5789999999999999999999999999999998887655
Q ss_pred ccCCCCCCCCCCcEEEEEEeC---------CCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEE
Q 008467 450 SPTGSGTNNPNQQLILASASF---------DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT-GEYLASGSLDKSMHIW 519 (564)
Q Consensus 450 ~p~~~~~~~~~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spd-g~~lasgs~dg~i~iw 519 (564)
+-+ +|++|+. |..|+|||++.-+.+.-+.-+.+| .-+.|.|. ...+|.++..|...+-
T Consensus 226 ~GN-----------lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 226 QGN-----------LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred cCC-----------eEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeec
Confidence 321 5667664 567899999977766544444444 45678886 4678888889999998
Q ss_pred eCCC---C-eEEEEEec-CCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 520 SLKE---G-KIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 520 ~~~~---~-~~~~~~~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
|..+ - .-+..... ...+..+++++.|+.||.|-.+|.|.+|-
T Consensus 294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 8332 1 11222222 33489999999999999999999999983
No 324
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.31 E-value=0.00088 Score=63.20 Aligned_cols=177 Identities=16% Similarity=0.184 Sum_probs=110.6
Q ss_pred ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCeeeeeccc-----cccc
Q 008467 370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD-PTGSLLASCSDDVTAKIWNMKQDKYVHDLRE-----HSKE 443 (564)
Q Consensus 370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~~~las~s~dg~i~iwd~~~~~~~~~~~~-----~~~~ 443 (564)
..+.+....+.|+.++........ +.... ...+++. +++.+++ +... .+.++|..+++....+.. ....
T Consensus 13 ~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v-~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~ 87 (246)
T PF08450_consen 13 RLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYV-ADSG-GIAVVDPDTGKVTVLADLPDGGVPFNR 87 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEE-EETT-CEEEEETTTTEEEEEEEEETTCSCTEE
T ss_pred EEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEE-EEcC-ceEEEecCCCcEEEEeeccCCCcccCC
Confidence 344555567778888877665432 22111 6677777 6665554 4444 455669888754332222 2345
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCC--------CeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEE-EEeCCC
Q 008467 444 IYTIRWSPTGSGTNNPNQQLILASASFD--------STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLA-SGSLDK 514 (564)
Q Consensus 444 i~~i~~~p~~~~~~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~la-sgs~dg 514 (564)
...+++.|+|. +.++.... |.|..++.. ++...... .-...+.|+|+||++.|. +-+..+
T Consensus 88 ~ND~~vd~~G~---------ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 88 PNDVAVDPDGN---------LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp EEEEEE-TTS----------EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred CceEEEcCCCC---------EEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence 67888888875 44444433 567777777 55443333 234568999999998765 567788
Q ss_pred cEEEEeCCC-Ce-E--EEEE---ecCC-CEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 515 SMHIWSLKE-GK-I--VKTY---TGNG-GIFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 515 ~i~iw~~~~-~~-~--~~~~---~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
.|..|++.. +. + ...+ .... ..-.++++.+|+..++.+.++.|.++|-
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDP 212 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECC
Confidence 899999853 22 2 1222 2222 3678999999999999999999999873
No 325
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.23 E-value=0.0049 Score=64.35 Aligned_cols=298 Identities=12% Similarity=0.157 Sum_probs=159.4
Q ss_pred CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeE--EEEECCCCCEEEEEeCCCeEEEEECC
Q 008467 228 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT--TLDWNGEGTLLATGSYDGQARIWSTN 305 (564)
Q Consensus 228 ~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~l~~s~~g~~l~sg~~dg~i~vw~~~ 305 (564)
+..++.++.|+.+.-.|..+++......... ........+. .+... ++..++.++.+|.|+.+|..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~-----------~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~ 128 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKL-----------PADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAE 128 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCC-----------CccccccccccCCcEEc-cCCeEEEecCCCeEEEEECC
Confidence 4556667778888888888776432211100 0000000000 01111 22567778889999999974
Q ss_pred -CceeEeecCCCC--CEEEEEeCC--CCCEEEEee---------CCCcEEEEECCCcceeEEEeecccCe----------
Q 008467 306 -GDLKCTLSKHKG--PIFSLKWNK--KGDYLLTGS---------CDKTAIVWDVKTEEWKQQFEFHSGPT---------- 361 (564)
Q Consensus 306 -~~~~~~~~~h~~--~V~~l~~~~--~~~~l~s~s---------~D~~v~iwd~~~~~~~~~~~~~~~~~---------- 361 (564)
|+.+-.+..... .-..+.-+| .+..++.++ .++.+...|..+++.+-.+.......
T Consensus 129 TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~ 208 (488)
T cd00216 129 TGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDR 208 (488)
T ss_pred CCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCc
Confidence 555544432211 000011111 123444543 36788999999998776655431110
Q ss_pred -------------EEEEcCCCceEEEEeCCC------------------eEEEEEcCCCceeeEec--CCC--------c
Q 008467 362 -------------LDVDWRNNVSFATSSTDN------------------MIYVCKIGENRPIKTFA--GHQ--------G 400 (564)
Q Consensus 362 -------------~~~~~~~~~~~~~~~~d~------------------~i~~~~~~~~~~~~~~~--~h~--------~ 400 (564)
..++... ..++.++.++ .++-.+..+++.+-.+. .|. .
T Consensus 209 ~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~ 287 (488)
T cd00216 209 QMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQ 287 (488)
T ss_pred ceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCC
Confidence 0111112 2333333332 67777887777665543 111 1
Q ss_pred ce-EEEEECCCCC---EEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEE---------
Q 008467 401 EV-NCVKWDPTGS---LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS--------- 467 (564)
Q Consensus 401 ~i-~~v~~~~~~~---~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s--------- 467 (564)
.+ ..+. .-++. .++.++.+|.+...|.++++.+-...... ..+...| +..++.+
T Consensus 288 p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~---------~~vyv~~~~~~~~~~~ 354 (488)
T cd00216 288 PSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP---------GLVYLGAFHIPLGLPP 354 (488)
T ss_pred CeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC---------ceEEEccccccccCcc
Confidence 11 0110 11333 57788899999999999998775432110 0111111 1111111
Q ss_pred -------EeCCCeEEEEeCCCCeEEEEEeCCC--------CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec
Q 008467 468 -------ASFDSTVKLWDVELGKLLYSLNGHR--------EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG 532 (564)
Q Consensus 468 -------~s~dg~i~iwd~~~~~~~~~~~~h~--------~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~ 532 (564)
...+|.|.-.|+.+|+.+.+..... .+...-...-.+..|+.++.||.|+.+|.++|+++..++.
T Consensus 355 ~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 355 QKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred cccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 1246789999999999988765321 1111111112567888899999999999999999998876
Q ss_pred CCCEE--EEEEccCCCEEEEE
Q 008467 533 NGGIF--EVCWNKEGDKIAAC 551 (564)
Q Consensus 533 ~~~i~--~~~w~~~g~~la~~ 551 (564)
.+.+. -+.+..+|+..++.
T Consensus 435 ~~~~~a~P~~~~~~g~~yv~~ 455 (488)
T cd00216 435 PSGIQATPMTYEVNGKQYVGV 455 (488)
T ss_pred CCCceEcCEEEEeCCEEEEEE
Confidence 55553 24566677544433
No 326
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.22 E-value=0.0017 Score=64.80 Aligned_cols=290 Identities=16% Similarity=0.219 Sum_probs=147.0
Q ss_pred CCCCCEEEEE---------ECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 008467 225 SPAGSLLASG---------SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 295 (564)
Q Consensus 225 sp~~~~lasg---------s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~ 295 (564)
|||+++++.. +..+...|||+.++... .... ....+....|||+|+.++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~--------------~l~~----~~~~~~~~~~sP~g~~~~~v~- 61 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEIT--------------PLTP----PPPKLQDAKWSPDGKYIAFVR- 61 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEE--------------ESS-----EETTBSEEEE-SSSTEEEEEE-
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceE--------------ECcC----CccccccceeecCCCeeEEEe-
Confidence 5777766653 22456778888765321 0000 024577889999999998876
Q ss_pred CCeEEEEECCCceeEeec--C-------C---------CCCEEEEEeCCCCCEEEEeeCCC-cEEEEEC---CCcceeEE
Q 008467 296 DGQARIWSTNGDLKCTLS--K-------H---------KGPIFSLKWNKKGDYLLTGSCDK-TAIVWDV---KTEEWKQQ 353 (564)
Q Consensus 296 dg~i~vw~~~~~~~~~~~--~-------h---------~~~V~~l~~~~~~~~l~s~s~D~-~v~iwd~---~~~~~~~~ 353 (564)
++.|.+++..+.....+. + - -+.-.++-|||+|++|+....|. .|..+.+ ....-
T Consensus 62 ~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~--- 138 (353)
T PF00930_consen 62 DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS--- 138 (353)
T ss_dssp TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE---
T ss_pred cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc---
Confidence 578999976543332221 1 0 01124678999999998776653 3444332 11100
Q ss_pred EeecccCeEEEEcCCCceEEEEeC--CCeEEEEEcCCCceee--Ee---cCCCcceEEEEECCCCC-EEE-EEeCCC---
Q 008467 354 FEFHSGPTLDVDWRNNVSFATSST--DNMIYVCKIGENRPIK--TF---AGHQGEVNCVKWDPTGS-LLA-SCSDDV--- 421 (564)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~--d~~i~~~~~~~~~~~~--~~---~~h~~~i~~v~~~~~~~-~la-s~s~dg--- 421 (564)
.-..+..+.+.. .+.. .-.++++++.+++... .. ..-...+..+.|.++++ +++ ....+.
T Consensus 139 ---~yp~~~~~~YPk-----~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~ 210 (353)
T PF00930_consen 139 ---QYPEVESIRYPK-----AGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRL 210 (353)
T ss_dssp ---SS-EEEEEE--B-----TTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEE
T ss_pred ---cCCcccccccCC-----CCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEE
Confidence 000011111100 0001 1135667776665422 11 23345688999999998 333 333333
Q ss_pred cEEEEeCCCCeeeeecccc-cccE---EEEEEc-cCCCCCCCCCCcEEEEEEeCCCeEEE--EeCCCCeEEEEEeCCCCC
Q 008467 422 TAKIWNMKQDKYVHDLREH-SKEI---YTIRWS-PTGSGTNNPNQQLILASASFDSTVKL--WDVELGKLLYSLNGHREP 494 (564)
Q Consensus 422 ~i~iwd~~~~~~~~~~~~~-~~~i---~~i~~~-p~~~~~~~~~~~~~l~s~s~dg~i~i--wd~~~~~~~~~~~~h~~~ 494 (564)
.+.+.|..++.....+... ...| ....|. +++ ..+|.....||--+| .+...+. ...++...-.
T Consensus 211 ~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~--------~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~ 281 (353)
T PF00930_consen 211 DLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDG--------NEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWE 281 (353)
T ss_dssp EEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTS--------SEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-
T ss_pred EEEEEECCCCceeEEEEecCCcceeeecccccccCCC--------CEEEEEEEcCCCcEEEEEcccccc-eeccccCcee
Confidence 3556676655432222111 1111 122332 332 234444457775444 4555444 4455555556
Q ss_pred EEE-EEEcCCCCEEE-EEeCC----CcEEEEeCC-CCeEEEEEecCCCE-EEEEEccCCCEEEEEEcC
Q 008467 495 VYS-LAFSPTGEYLA-SGSLD----KSMHIWSLK-EGKIVKTYTGNGGI-FEVCWNKEGDKIAACFAN 554 (564)
Q Consensus 495 i~~-~~~spdg~~la-sgs~d----g~i~iw~~~-~~~~~~~~~~~~~i-~~~~w~~~g~~la~~~~~ 554 (564)
|.. +.|+++++.|. +|..+ ..|+.-++. .++ ++.++...+. +.++|||+|++++..+.+
T Consensus 282 V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~-~~~LT~~~~~~~~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 282 VTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE-PKCLTCEDGDHYSASFSPDGKYYVDTYSG 348 (353)
T ss_dssp EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE-EEESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred ecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC-eEeccCCCCCceEEEECCCCCEEEEEEcC
Confidence 755 67899877654 55543 245555666 444 4444443333 699999999988866543
No 327
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.22 E-value=0.00028 Score=71.21 Aligned_cols=141 Identities=20% Similarity=0.242 Sum_probs=83.6
Q ss_pred EEEECCCCCEEEEE-eCCCcEEEE--eCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEE--e
Q 008467 404 CVKWDPTGSLLASC-SDDVTAKIW--NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW--D 478 (564)
Q Consensus 404 ~v~~~~~~~~las~-s~dg~i~iw--d~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iw--d 478 (564)
..+|+|||+.|+-+ ..||...|| |+.++... .+..-.+.-..-.|+|+|. .++.+.+..|.-.|| |
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~--------~ivf~Sdr~G~p~I~~~~ 312 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGS--------KIVFTSDRGGRPQIYLYD 312 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-ecccCCccccCccCCCCCC--------EEEEEeCCCCCcceEEEC
Confidence 46799999887654 457765554 66555532 2332222223445666664 466666677765554 5
Q ss_pred CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC-CCc--EEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcC
Q 008467 479 VELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL-DKS--MHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN 554 (564)
Q Consensus 479 ~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~-dg~--i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~ 554 (564)
.+.+.. ..++.....-..-.|||||++|+..+. +|. |.+.++.++.....+.........+|.++|+.+...+..
T Consensus 313 ~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 313 LEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence 554333 333333222236789999999987764 344 777777666545555444445567888888877765443
No 328
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.20 E-value=0.00089 Score=69.85 Aligned_cols=271 Identities=11% Similarity=0.085 Sum_probs=146.5
Q ss_pred CEEEEEeCCCeEEEEECC-CceeEeecCCCC------CEE--EEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecc
Q 008467 288 TLLATGSYDGQARIWSTN-GDLKCTLSKHKG------PIF--SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 358 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~------~V~--~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 358 (564)
..+..++.++.+...|.. |+.+-.+..... ++. .+... ++..++.++.++.|..+|.++++.+-.+....
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 345566667877777753 444333322111 111 01111 22678888899999999999998776654432
Q ss_pred cC--eEEE----EcCCCceEEEE--------eCCCeEEEEEcCCCceeeEecCCCc--------------------ce-E
Q 008467 359 GP--TLDV----DWRNNVSFATS--------STDNMIYVCKIGENRPIKTFAGHQG--------------------EV-N 403 (564)
Q Consensus 359 ~~--~~~~----~~~~~~~~~~~--------~~d~~i~~~~~~~~~~~~~~~~h~~--------------------~i-~ 403 (564)
.. ...+ ...++..++.+ ..++.++.+|..+++.+-.+..... .+ .
T Consensus 141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~ 220 (488)
T cd00216 141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA 220 (488)
T ss_pred CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccC
Confidence 10 0000 11122233322 2357788888877776544432110 11 1
Q ss_pred EEEECCCCCEEEEEeCCC------------------cEEEEeCCCCeeeeecccccccEE--EEEEccCCCC--CCCCCC
Q 008467 404 CVKWDPTGSLLASCSDDV------------------TAKIWNMKQDKYVHDLREHSKEIY--TIRWSPTGSG--TNNPNQ 461 (564)
Q Consensus 404 ~v~~~~~~~~las~s~dg------------------~i~iwd~~~~~~~~~~~~~~~~i~--~i~~~p~~~~--~~~~~~ 461 (564)
..++++.+.+++.++.++ .+.-.|.++++.+-.++.-..... .....|.-.. ..+...
T Consensus 221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~ 300 (488)
T cd00216 221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP 300 (488)
T ss_pred CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence 244555566777777665 688888888887765432111111 0000010000 000111
Q ss_pred cEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE-----------------EeCCCcEEEEeCCCC
Q 008467 462 QLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS-----------------GSLDKSMHIWSLKEG 524 (564)
Q Consensus 462 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~las-----------------gs~dg~i~iw~~~~~ 524 (564)
..+++.++.+|.+...|.++|+.++..... ...++.+| +..++. ...+|.|.-.|+.+|
T Consensus 301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG 376 (488)
T cd00216 301 VPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG 376 (488)
T ss_pred eEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC
Confidence 135777888999999999999998876421 12234445 222221 124678999999999
Q ss_pred eEEEEEecC---------CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 525 KIVKTYTGN---------GGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 525 ~~~~~~~~~---------~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
+.+...... .....-.--..+..|.+++.+|.+.-+|.+
T Consensus 377 ~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~ 424 (488)
T cd00216 377 KVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDAT 424 (488)
T ss_pred cEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECC
Confidence 988776543 111110111256778888888888887753
No 329
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=6.5e-05 Score=71.31 Aligned_cols=240 Identities=13% Similarity=0.149 Sum_probs=137.7
Q ss_pred eecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC-C-ceEEEEeCCCeEEEEEcC
Q 008467 311 TLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-N-VSFATSSTDNMIYVCKIG 387 (564)
Q Consensus 311 ~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~d~~i~~~~~~ 387 (564)
.+..|...|..++|+|..+ .+..++.++.|+|.|+++..++..+..+ .++.+.+|.- + ..+.++-..|.|+++|++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 5678888999999999887 6788999999999999999998888877 6788888853 3 345677788999999997
Q ss_pred CCc-eeeEecC--CCcceEEE------EECCCCCEEEEEeCCCcEEEEeCCC--Ceeeeecc-cccccEEEEEEccCCCC
Q 008467 388 ENR-PIKTFAG--HQGEVNCV------KWDPTGSLLASCSDDVTAKIWNMKQ--DKYVHDLR-EHSKEIYTIRWSPTGSG 455 (564)
Q Consensus 388 ~~~-~~~~~~~--h~~~i~~v------~~~~~~~~las~s~dg~i~iwd~~~--~~~~~~~~-~~~~~i~~i~~~p~~~~ 455 (564)
... ++..+.+ ...+|..+ ...+.|.+++..+.+ +..|.+.. +.....+. ...+.+.+..+.+..
T Consensus 267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~s-- 342 (463)
T KOG1645|consen 267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVS-- 342 (463)
T ss_pred CCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCcc--
Confidence 643 3323322 11223222 234456666555543 34555431 11111111 112233333332211
Q ss_pred CCCCCCcEEEEEEeCCCe---EE----EEeCCCCeEEEEEe-CC-CC---C---EEEEEEcCCCCEEE-EEeCCCcEEEE
Q 008467 456 TNNPNQQLILASASFDST---VK----LWDVELGKLLYSLN-GH-RE---P---VYSLAFSPTGEYLA-SGSLDKSMHIW 519 (564)
Q Consensus 456 ~~~~~~~~~l~s~s~dg~---i~----iwd~~~~~~~~~~~-~h-~~---~---i~~~~~spdg~~la-sgs~dg~i~iw 519 (564)
..+|+|.-.+.+ ++ --|-..|..+...+ ++ .. + -..+.=.++.++|+ .|+..+.+.+|
T Consensus 343 ------nh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~ 416 (463)
T KOG1645|consen 343 ------NHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQ 416 (463)
T ss_pred ------ceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEe
Confidence 112222111000 00 00111232222111 11 00 0 01122245556665 45556889999
Q ss_pred eCCCCeEEEEEecCCCEEEEEEcc-CCC-EEEEEEcCCcEEEEEe
Q 008467 520 SLKEGKIVKTYTGNGGIFEVCWNK-EGD-KIAACFANHTVCVLDF 562 (564)
Q Consensus 520 ~~~~~~~~~~~~~~~~i~~~~w~~-~g~-~la~~~~~~~v~v~~~ 562 (564)
|..++++++++.-+..+.+++-.. .|. +||+- .|..+.||.+
T Consensus 417 D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~ 460 (463)
T KOG1645|consen 417 DPHSFEVVQTLALSEPVLDICPNDTNGSSYLALL-TDDRVHIYKN 460 (463)
T ss_pred ccchhheeeecccCcceeecceeecCCcchhhhe-ecceEEEEec
Confidence 999999999999889999998554 454 55554 5668888864
No 330
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=5.4e-05 Score=78.21 Aligned_cols=233 Identities=18% Similarity=0.231 Sum_probs=137.1
Q ss_pred EEEECCCCCEEEEEeCC----CeEEEEECCCceeE--eecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE
Q 008467 280 TLDWNGEGTLLATGSYD----GQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 353 (564)
Q Consensus 280 ~l~~s~~g~~l~sg~~d----g~i~vw~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 353 (564)
-..|+|...+|++++.. |.|.||--.|.... +.+.| +++++|+|..-.|+.|=.-|.+.+|...+.+..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h-- 94 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH-- 94 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEecCCCCCccccccee---hhhhccChHHHHHhhccccceeEEEecCCceee--
Confidence 34799999999998764 88999976665322 12222 467999998777777766778888876554321
Q ss_pred EeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 008467 354 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 433 (564)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~ 433 (564)
.....|..+|..+.||++|..++|+..-|.+.+|.......
T Consensus 95 ---------------------------------------tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~ 135 (1416)
T KOG3617|consen 95 ---------------------------------------TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGE 135 (1416)
T ss_pred ---------------------------------------eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccc
Confidence 12235788899999999999999999999999998753222
Q ss_pred eee--ccccc--c--cEEEEEEccCCCC---------------------------------CCCCCCcEEEEEEeCCCeE
Q 008467 434 VHD--LREHS--K--EIYTIRWSPTGSG---------------------------------TNNPNQQLILASASFDSTV 474 (564)
Q Consensus 434 ~~~--~~~~~--~--~i~~i~~~p~~~~---------------------------------~~~~~~~~~l~s~s~dg~i 474 (564)
+.. +-.|. . ...+.+.++++.. ...|++. .+..++.+|+|
T Consensus 136 ~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~-~F~~~~~~GtV 214 (1416)
T KOG3617|consen 136 IQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGT-EFLFAGKSGTV 214 (1416)
T ss_pred cccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCc-EEEEEcCCceE
Confidence 211 11111 1 1223333333110 0112232 34456678888
Q ss_pred EEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeE---------------------------
Q 008467 475 KLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL-KEGKI--------------------------- 526 (564)
Q Consensus 475 ~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~-~~~~~--------------------------- 526 (564)
+..|- .|++....+..+. -.+-|.|-..-|..--.+-++.++-+ .+|+.
T Consensus 215 yyvdq-~g~~~~V~k~dS~--vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGv 291 (1416)
T KOG3617|consen 215 YYVDQ-NGRQRTVHKLDSE--VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGV 291 (1416)
T ss_pred EEEcC-CCcEEEEEEccch--HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccccc
Confidence 77763 3555544443222 12334443333333333333333222 11210
Q ss_pred E-E----EEecCCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467 527 V-K----TYTGNGGIFEVCWNKEGDKIAACFANHTVCVL 560 (564)
Q Consensus 527 ~-~----~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~ 560 (564)
+ + .+.....++++|+...+..|++|...|.|.+|
T Consensus 292 Lr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w 330 (1416)
T KOG3617|consen 292 LRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIW 330 (1416)
T ss_pred ccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEe
Confidence 0 0 01113468899999999999999999999988
No 331
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.14 E-value=0.0019 Score=65.52 Aligned_cols=49 Identities=24% Similarity=0.465 Sum_probs=39.0
Q ss_pred eEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 008467 298 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 347 (564)
Q Consensus 298 ~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~ 347 (564)
.|+||+..|.+...+.--.+.|.++.|+.+ ..|+....||+++++|+..
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCC
Confidence 589999998887766544489999999875 4566777899999999863
No 332
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.0008 Score=70.22 Aligned_cols=188 Identities=12% Similarity=0.195 Sum_probs=117.8
Q ss_pred ccCCccceEEEEECCCC-CEEEEEECCC-----cEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC
Q 008467 212 LEGHTSEVCACAWSPAG-SLLASGSGDS-----TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 285 (564)
Q Consensus 212 l~~h~~~V~~~~~sp~~-~~lasgs~D~-----~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 285 (564)
+..+...+-..-|.-++ .+|++-+.|. .++||+++......+ |......+......+....++++++.|.
T Consensus 60 fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s----P~c~~~~ri~~~~np~~~~p~s~l~Vs~ 135 (933)
T KOG2114|consen 60 FQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS----PQCLYEHRIFTIKNPTNPSPASSLAVSE 135 (933)
T ss_pred heecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC----cceeeeeeeeccCCCCCCCcceEEEEEc
Confidence 34455553334455554 6888877665 499999975432111 3333222322222223467899999999
Q ss_pred CCCEEEEEeCCCeEEEEECC-----CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc-eeEEEeeccc
Q 008467 286 EGTLLATGSYDGQARIWSTN-----GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSG 359 (564)
Q Consensus 286 ~g~~l~sg~~dg~i~vw~~~-----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~ 359 (564)
+-+.+|+|-.+|.|..+.-+ |........-..||+++.+..++..++-+..-..|.+|.+.... .......++.
T Consensus 136 ~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~ 215 (933)
T KOG2114|consen 136 DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGI 215 (933)
T ss_pred cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCc
Confidence 99999999999999998532 22122233456799999999999875555556789999987544 2333555555
Q ss_pred CeEEEEcCCCce-EEEEeCCCeEEEEEcCCCceeeEec-CCCcceEE
Q 008467 360 PTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNC 404 (564)
Q Consensus 360 ~~~~~~~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~ 404 (564)
+..+..+.+... |++ ..+..+++|+.+..++...|. ||.....+
T Consensus 216 ~lnCss~~~~t~qfIc-a~~e~l~fY~sd~~~~cfaf~~g~kk~~~~ 261 (933)
T KOG2114|consen 216 SLNCSSFSDGTYQFIC-AGSEFLYFYDSDGRGPCFAFEVGEKKEMLV 261 (933)
T ss_pred cceeeecCCCCccEEE-ecCceEEEEcCCCcceeeeecCCCeEEEEE
Confidence 665555554444 544 455678888888777776666 66554433
No 333
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.00 E-value=0.00012 Score=73.44 Aligned_cols=114 Identities=18% Similarity=0.302 Sum_probs=83.4
Q ss_pred cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 008467 439 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHI 518 (564)
Q Consensus 439 ~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~i 518 (564)
.....+.+.+++|+.. .|+.|+.||+|.+||...+..... ...-..+.++|+|+|.++++|+..|.+.+
T Consensus 257 pL~s~v~~ca~sp~E~---------kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~ 325 (545)
T PF11768_consen 257 PLPSQVICCARSPSED---------KLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQC 325 (545)
T ss_pred ecCCcceEEecCcccc---------eEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEE
Confidence 3556788888888754 688899999999999876643322 23455789999999999999999999999
Q ss_pred EeCCCCeEEEE-----------------EecCCCEEEEEEccCC-------------CEEEEEEcCCcEEEEEee
Q 008467 519 WSLKEGKIVKT-----------------YTGNGGIFEVCWNKEG-------------DKIAACFANHTVCVLDFR 563 (564)
Q Consensus 519 w~~~~~~~~~~-----------------~~~~~~i~~~~w~~~g-------------~~la~~~~~~~v~v~~~~ 563 (564)
||+.-.-+... +.....+..+.|.+.. +.|+..+..|-+.|+-|.
T Consensus 326 FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~~~~~~~~~~~~~~~L~l~f~~GPl~vl~~~ 400 (545)
T PF11768_consen 326 FDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAPQLSSQGEFYADTYDLLLLVFERGPLAVLRFK 400 (545)
T ss_pred EEeecCccceeeccccCCCccEEeeehhccCcchhheeEeccCCCccccCCCcCCccceEEEEEcCCCeEEEEEe
Confidence 99864322111 1122345678998432 477888888988887664
No 334
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.96 E-value=0.021 Score=57.05 Aligned_cols=88 Identities=13% Similarity=0.203 Sum_probs=58.9
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccC--CCC---------CC-CCCCcEEEEE
Q 008467 400 GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT--GSG---------TN-NPNQQLILAS 467 (564)
Q Consensus 400 ~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~--~~~---------~~-~~~~~~~l~s 467 (564)
..+.+++.+|++++.|+...=|.|.++|+.++..++-+++.... .+.|-.. ... .. .....++++-
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA--qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA--QCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc--eEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 45788999999999888877899999999988877776654332 1222211 100 00 0112234555
Q ss_pred EeCCCeEEEEeCCCCeEEEEEe
Q 008467 468 ASFDSTVKLWDVELGKLLYSLN 489 (564)
Q Consensus 468 ~s~dg~i~iwd~~~~~~~~~~~ 489 (564)
+-.-|.|.||.++.|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 7778999999999988877664
No 335
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.96 E-value=0.0027 Score=64.50 Aligned_cols=218 Identities=15% Similarity=0.206 Sum_probs=117.1
Q ss_pred CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeE
Q 008467 315 HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT 394 (564)
Q Consensus 315 h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~ 394 (564)
..-....+.++|+|++++. +.||...|+...... .. ..+...++.|.....|++-.....|.++.--++...+.
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r--~k---~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWR--NK---AFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTE--EE---EEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT--
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCc--cc---ccCceeEEEEecCccEEEEECCCeEEEEEcCccccceE
Confidence 3344678999999999888 567888888743222 11 12345677888888899888888888864433333222
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeE
Q 008467 395 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV 474 (564)
Q Consensus 395 ~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i 474 (564)
+.-. ..+..+-. |.+|+..+.+ .|.+||+.+++.+..+... .|..+.|++++. +++-.+ +.++
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~---------~val~t-~~~i 167 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGE---------LVALVT-KDSI 167 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSS---------EEEEE--S-SE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCC---------EEEEEe-CCeE
Confidence 2211 12333322 8888777665 8999999999999887643 389999999875 444444 4578
Q ss_pred EEEeCCCC-----------eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEecCCCEEEEEE
Q 008467 475 KLWDVELG-----------KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK--IVKTYTGNGGIFEVCW 541 (564)
Q Consensus 475 ~iwd~~~~-----------~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~--~~~~~~~~~~i~~~~w 541 (564)
.|++.... .....+..-...|.+.+|..| -++.|... .|+.+ -.|. .++.+ ...++=+..
T Consensus 168 ~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~--~lkYl--~~Ge~~~i~~l--d~~~yllgy 240 (443)
T PF04053_consen 168 YILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN--HLKYL--VNGETGIIAHL--DKPLYLLGY 240 (443)
T ss_dssp EEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT--EEEEE--ETTEEEEEEE---SS--EEEEE
T ss_pred EEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC--eEEEE--EcCCcceEEEc--CCceEEEEE
Confidence 88775433 012222221456888888766 44444332 67663 3343 23333 345677777
Q ss_pred ccCCCEEEEEEcCCcEEEEEe
Q 008467 542 NKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 542 ~~~g~~la~~~~~~~v~v~~~ 562 (564)
.++.++|.....++.|..+.+
T Consensus 241 ~~~~~~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 241 LPKENRLYLIDRDGNVISYEL 261 (443)
T ss_dssp ETTTTEEEEE-TT--EEEEE-
T ss_pred EccCCEEEEEECCCCEEEEEE
Confidence 787788888878877776654
No 336
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.95 E-value=9.1e-05 Score=74.28 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=61.7
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 490 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 490 ~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
.....|.+.+++|+...|+.|..||.|.+||...+....+ ...-.+..++|+|+|..+++|+..|.+.+||.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 3667899999999999999999999999999987643322 333446899999999999999999999999974
No 337
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.95 E-value=0.00039 Score=70.45 Aligned_cols=146 Identities=16% Similarity=0.270 Sum_probs=84.4
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeE
Q 008467 395 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV 474 (564)
Q Consensus 395 ~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i 474 (564)
+....-....+.++|+|++++.| .||...|+.....+... .+....+.|.+.+ -+|+-...++|
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n----------~yAv~~~~~~I 91 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN----------RYAVLESSSTI 91 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS----------EEEEE-TTS-E
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc----------cEEEEECCCeE
Confidence 33344457789999999998884 56777777744333221 2334667888754 36666678889
Q ss_pred EEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcC
Q 008467 475 KLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN 554 (564)
Q Consensus 475 ~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~ 554 (564)
+|+.--..+....+.. ...+..|-. |..|+..+.+ .|.+||+.+++++..+.... |..+-||++|+++|..+.+
T Consensus 92 ~I~kn~~~~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 92 KIYKNFKNEVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp EEEETTEE-TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-
T ss_pred EEEEcCccccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC
Confidence 9973222222122221 113444433 8888877766 79999999999999987553 8899999999999999766
Q ss_pred CcEEEEEee
Q 008467 555 HTVCVLDFR 563 (564)
Q Consensus 555 ~~v~v~~~~ 563 (564)
.+.|++..
T Consensus 166 -~i~il~~~ 173 (443)
T PF04053_consen 166 -SIYILKYN 173 (443)
T ss_dssp -SEEEEEE-
T ss_pred -eEEEEEec
Confidence 67787653
No 338
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.93 E-value=1.9e-06 Score=53.14 Aligned_cols=31 Identities=35% Similarity=0.546 Sum_probs=28.7
Q ss_pred ccchhhhhHHHHHhcCCceeeeccccccCCc
Q 008467 6 SEELNYLVFRYLQESGLLHSAFVLGYEAGIN 36 (564)
Q Consensus 6 s~evn~Li~ryl~E~g~~~sa~~~~~E~~~~ 36 (564)
-.++|.||++||++.||..||.+|..|+++.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 3579999999999999999999999999875
No 339
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.93 E-value=0.041 Score=57.78 Aligned_cols=75 Identities=19% Similarity=0.472 Sum_probs=51.9
Q ss_pred CeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEE--EEEccCCCE
Q 008467 472 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFE--VCWNKEGDK 547 (564)
Q Consensus 472 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~--~~w~~~g~~ 547 (564)
|.|.-+|+.+|+.+....... +...-...-.|..++.++.||.++.+|.++|+.+..++..+.+.. +.+..+|+.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~-p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~q 517 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDF-PLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQ 517 (527)
T ss_pred eeEEEEeCCCCceeeEecCCC-CCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEE
Confidence 568889999999888765322 211111122455777788899999999999999988876655443 556667763
No 340
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.93 E-value=0.0013 Score=67.80 Aligned_cols=212 Identities=15% Similarity=0.110 Sum_probs=117.8
Q ss_pred eCCCCCEEEE-eeCCCcEEEEECCCcceeEEEeecccC-eEEEEcCCCceEEEEe---CCCeEEEEEcCCCceeeEecCC
Q 008467 324 WNKKGDYLLT-GSCDKTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSS---TDNMIYVCKIGENRPIKTFAGH 398 (564)
Q Consensus 324 ~~~~~~~l~s-~s~D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~d~~i~~~~~~~~~~~~~~~~h 398 (564)
+.|+|+.+.. .-..+.+.+.|..+.+...++.....+ ..++.......|+++. ....+...+..+..-+..|.-.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 3455654432 223355667777776665555443322 2233333333444431 1222322222211111111100
Q ss_pred CcceEEEEECCCCCEEEEEeCCCcEEEEeCCC-----CeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCe
Q 008467 399 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ-----DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST 473 (564)
Q Consensus 399 ~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~-----~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~ 473 (564)
.+ .++.++|++... .+++|.+.|..+ ...+..+ .-......+.++|+|. .+++++..+.+
T Consensus 280 --~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGk--------ylyVanklS~t 344 (635)
T PRK02888 280 --RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGK--------YFIANGKLSPT 344 (635)
T ss_pred --HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCC--------EEEEeCCCCCc
Confidence 00 123457776554 367899999887 3333333 2334456778888775 57788888999
Q ss_pred EEEEeCCCCeE------------EEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC----------CeEEEEEe
Q 008467 474 VKLWDVELGKL------------LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE----------GKIVKTYT 531 (564)
Q Consensus 474 i~iwd~~~~~~------------~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~----------~~~~~~~~ 531 (564)
|.|.|+.+.+. +....--.+ -...+|.++|..+.|--.|..|..|++.+ ..++....
T Consensus 345 VSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~d 423 (635)
T PRK02888 345 VTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLD 423 (635)
T ss_pred EEEEEChhhhhhhhccCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceeccc
Confidence 99999987542 333332223 35678999999888999999999999876 23444333
Q ss_pred cCCCEEEEE------EccCCCEEEEE
Q 008467 532 GNGGIFEVC------WNKEGDKIAAC 551 (564)
Q Consensus 532 ~~~~i~~~~------w~~~g~~la~~ 551 (564)
-+-.+-.+. -.|||++|++.
T Consensus 424 V~y~pgh~~~~~g~t~~~dgk~l~~~ 449 (635)
T PRK02888 424 VHYQPGHNHASMGETKEADGKWLVSL 449 (635)
T ss_pred CCCccceeeecCCCcCCCCCCEEEEc
Confidence 222222222 37889988876
No 341
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.91 E-value=0.0079 Score=54.31 Aligned_cols=205 Identities=15% Similarity=0.127 Sum_probs=116.8
Q ss_pred CCEEEEeeCCCcEEEEECCCcceeEEEee----cccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceE
Q 008467 328 GDYLLTGSCDKTAIVWDVKTEEWKQQFEF----HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVN 403 (564)
Q Consensus 328 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~ 403 (564)
..+++.||..+.+..-|..+|.++-.-.. ...++. -+..++.+...+.+|+.+..++..+..|..-..--.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-----vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~ 97 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-----VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV 97 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-----ECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc
Confidence 45677888888888888888775432111 111111 123367778888899999888876666654333223
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-
Q 008467 404 CVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG- 482 (564)
Q Consensus 404 ~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~- 482 (564)
.....+++.++..|+.|++...-|.++..++...+-..+...+-+..|. +.. |..+...|.|.--+...+
T Consensus 98 ~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-------~~s--ly~a~t~G~vlavt~~~~~ 168 (354)
T KOG4649|consen 98 RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-------DGS--LYAAITAGAVLAVTKNPYS 168 (354)
T ss_pred ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCC-------Cce--EEEEeccceEEEEccCCCC
Confidence 4566889999999999999999999998888765432222112122221 112 233334454433333322
Q ss_pred -eEEEEEeCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEE-EEEEc-cCCCEEEEE
Q 008467 483 -KLLYSLNGHREPVYSLAFSP--TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF-EVCWN-KEGDKIAAC 551 (564)
Q Consensus 483 -~~~~~~~~h~~~i~~~~~sp--dg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~-~~~w~-~~g~~la~~ 551 (564)
..++... ...||.+ +| -+..+..+.-||.+.-++ ..|+.+..+...++|+ +.+-+ |.-+.|..+
T Consensus 169 ~~~~w~~~-~~~PiF~---splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~ 237 (354)
T KOG4649|consen 169 STEFWAAT-RFGPIFA---SPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPATKGPIFMEPCESRPSCQQISLE 237 (354)
T ss_pred cceehhhh-cCCcccc---CceeccceEEEEEeccEEEEEc-CCCcEEEeecCCCceecccccCCCcceEEEEe
Confidence 1111111 1234432 11 145566677788888887 6677777776666664 23333 333444444
No 342
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.90 E-value=0.026 Score=57.28 Aligned_cols=222 Identities=16% Similarity=0.286 Sum_probs=109.7
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEee-------cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc
Q 008467 276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTL-------SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 348 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~-------~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~ 348 (564)
..|.++.|+.+.. |++-..||.+++++..|.....+ .-....+....+..+|-.++++ ++.+.+..-...
T Consensus 81 ~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~--~~~~~~v~n~~~ 157 (410)
T PF04841_consen 81 GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTG--NNRFYVVNNIDE 157 (410)
T ss_pred CCEEEEEECCCCe-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEEEECC--CCeEEEEeCccc
Confidence 6799999998654 55667899999999877661111 1112223333444466444543 344444322221
Q ss_pred c-eeEEEeecccCeEEEEcC-----------CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEE
Q 008467 349 E-WKQQFEFHSGPTLDVDWR-----------NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS 416 (564)
Q Consensus 349 ~-~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las 416 (564)
. ..+.+...........|. .....+....+..+++.+...-.+ + ...+++..++.||+|++||.
T Consensus 158 ~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i-~~~~~i~~iavSpng~~iAl 233 (410)
T PF04841_consen 158 PVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I-DSDGPIIKIAVSPNGKFIAL 233 (410)
T ss_pred cchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c-cCCCCeEEEEECCCCCEEEE
Confidence 1 111111000000000111 111122222333333222211111 1 12357999999999999999
Q ss_pred EeCCCcEEEEeCCCCeeeeecccc-cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCE
Q 008467 417 CSDDVTAKIWNMKQDKYVHDLREH-SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPV 495 (564)
Q Consensus 417 ~s~dg~i~iwd~~~~~~~~~~~~~-~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i 495 (564)
-..+|.+.+.+..-.+...++... ......+.|. +.|..+-.|. ..+.-+.....
T Consensus 234 ~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WC------------------G~dav~l~~~----~~l~lvg~~~~-- 289 (410)
T PF04841_consen 234 FTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWC------------------GNDAVVLSWE----DELLLVGPDGD-- 289 (410)
T ss_pred EECCCCEEEEECcccceeEEeecCcCCCCcEEEEE------------------CCCcEEEEeC----CEEEEECCCCC--
Confidence 999999998876555444443322 2233445553 3344444441 11211212222
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 008467 496 YSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 530 (564)
Q Consensus 496 ~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~ 530 (564)
.+.|.-++..++..-.|| |+|..-..-+.+...
T Consensus 290 -~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~V 322 (410)
T PF04841_consen 290 -SISFWYDGPVILVSEIDG-VRIITSTSHEFLQRV 322 (410)
T ss_pred -ceEEeccCceEEeccCCc-eEEEeCCceEEEEEC
Confidence 234555555555566677 888877666665543
No 343
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.87 E-value=5.5e-06 Score=82.87 Aligned_cols=194 Identities=21% Similarity=0.334 Sum_probs=122.6
Q ss_pred CCeEEEEECCCC--CEEEEEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEeCCCCCEEEEeeC-----CCcEEEEEC
Q 008467 276 KDVTTLDWNGEG--TLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSC-----DKTAIVWDV 345 (564)
Q Consensus 276 ~~V~~l~~s~~g--~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-----D~~v~iwd~ 345 (564)
..+.|++|+-+. ..++.|..+|.|-+-..... -....++|..+.++++|++-....++++. |..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 457788877644 57889999999998875422 23456788899999999996544444444 457999999
Q ss_pred CCc--ceeEEEeecc---cCeEEEEcCCCceEE-EEeCCCeEEEEEcCCCce-eeEecCCCcceEEEEECC-CCCEEEEE
Q 008467 346 KTE--EWKQQFEFHS---GPTLDVDWRNNVSFA-TSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDP-TGSLLASC 417 (564)
Q Consensus 346 ~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~-~~~~~~h~~~i~~v~~~~-~~~~las~ 417 (564)
.++ .......+.. .....++|..+..++ +|.....+.+++++.... ...+ .+..+..+..+| .+.++++-
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence 876 2222222222 233467787655554 455556777777763221 1111 123455677788 67777655
Q ss_pred eCCCcEEEEeC-C-CCeeeeeccc----ccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-CeEEEEeCC
Q 008467 418 SDDVTAKIWNM-K-QDKYVHDLRE----HSKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVE 480 (564)
Q Consensus 418 s~dg~i~iwd~-~-~~~~~~~~~~----~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~ 480 (564)
+ ||.|-+||. + -..++..+.. ....+..++|.|...+ ++++.+.| ++|+++|+.
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtg--------lla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTG--------LLAVLSRDSITIRLYDIC 275 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcc--------hhhhhccCcceEEEeccc
Confidence 5 999999993 2 2233322221 2234899999997643 56676655 789999875
No 344
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.84 E-value=0.0068 Score=60.51 Aligned_cols=273 Identities=17% Similarity=0.240 Sum_probs=131.5
Q ss_pred ccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeecc-ccccC-CCCeEEEEECCCCCEEEEE
Q 008467 216 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG-RTNEK-SKDVTTLDWNGEGTLLATG 293 (564)
Q Consensus 216 ~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~V~~l~~s~~g~~l~sg 293 (564)
...+....|||+|+.+|... ++-+.++++.++....-...+..... ..... ...+. -..-..+-|||||++||..
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~--nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~ 118 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIY--NGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL 118 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEE--ESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEE--cCccceeccccccccccceEECCCCCEEEEE
Confidence 56678899999999998875 57899988766532111111100000 00000 00000 1223568999999999987
Q ss_pred eCC-CeEEEEECCCceeEeecCCC---CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE-Ee----ecccCeEEE
Q 008467 294 SYD-GQARIWSTNGDLKCTLSKHK---GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-FE----FHSGPTLDV 364 (564)
Q Consensus 294 ~~d-g~i~vw~~~~~~~~~~~~h~---~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~----~~~~~~~~~ 364 (564)
..| ..|+.+... ...... -.+..+++-.-|.-... -.+.|+|+.+++.... .. ....-+..+
T Consensus 119 ~~d~~~v~~~~~~-----~~~~~~~~yp~~~~~~YPk~G~~np~----v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v 189 (353)
T PF00930_consen 119 RFDEREVPEYPLP-----DYSPPDSQYPEVESIRYPKAGDPNPR----VSLFVVDLASGKTTELDPPNSLNPQDYYLTRV 189 (353)
T ss_dssp EEE-TTS-EEEEE-----EESSSTESS-EEEEEE--BTTS---E----EEEEEEESSSTCCCEE---HHHHTSSEEEEEE
T ss_pred EECCcCCceEEee-----ccCCccccCCcccccccCCCCCcCCc----eEEEEEECCCCcEEEeeeccccCCCccCcccc
Confidence 655 333333210 011111 12344444322222111 1456678877765321 11 112235677
Q ss_pred EcCCCce-EEEEe--CC---CeEEEEEcCCCceeeEecC-CCcc---eEEEEEC-CCCC-EEEEEeCCCcEEEE--eCCC
Q 008467 365 DWRNNVS-FATSS--TD---NMIYVCKIGENRPIKTFAG-HQGE---VNCVKWD-PTGS-LLASCSDDVTAKIW--NMKQ 430 (564)
Q Consensus 365 ~~~~~~~-~~~~~--~d---~~i~~~~~~~~~~~~~~~~-h~~~---i~~v~~~-~~~~-~las~s~dg~i~iw--d~~~ 430 (564)
.|.++.. ++..- .+ ..+.+|+..++.....+.. ..+. .....|. +++. +|.....||.-+|| +...
T Consensus 190 ~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~ 269 (353)
T PF00930_consen 190 GWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDG 269 (353)
T ss_dssp EEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTS
T ss_pred eecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccc
Confidence 8866554 44332 22 2356677765543222221 1222 2245554 5555 44555577866555 4444
Q ss_pred CeeeeecccccccEEE-EEEccCCCCCCCCCCcEEEEEEeCC----CeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCC
Q 008467 431 DKYVHDLREHSKEIYT-IRWSPTGSGTNNPNQQLILASASFD----STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE 505 (564)
Q Consensus 431 ~~~~~~~~~~~~~i~~-i~~~p~~~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~ 505 (564)
+. ...+....-.|.. +.|.+.+. .+..++..+ ..|..-++..+..+..++.....-..++|||+|+
T Consensus 270 ~~-~~~lT~G~~~V~~i~~~d~~~~--------~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~ 340 (353)
T PF00930_consen 270 GK-PRQLTSGDWEVTSILGWDEDNN--------RIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGK 340 (353)
T ss_dssp SE-EEESS-SSS-EEEEEEEECTSS--------EEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSS
T ss_pred cc-eeccccCceeecccceEcCCCC--------EEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCC
Confidence 44 3345544555644 56666543 355556543 2555556662344556654444337999999999
Q ss_pred EEEE
Q 008467 506 YLAS 509 (564)
Q Consensus 506 ~las 509 (564)
+++.
T Consensus 341 y~v~ 344 (353)
T PF00930_consen 341 YYVD 344 (353)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
No 345
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.80 E-value=0.029 Score=56.23 Aligned_cols=290 Identities=14% Similarity=0.132 Sum_probs=133.7
Q ss_pred ceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCC-CCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467 218 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNG-GAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 296 (564)
Q Consensus 218 ~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 296 (564)
.|+.+.|.++..-||.|-..|.+.||.+...+... ....... ......-........++.+.=-.+.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~di~~r~~~--------- 70 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDL---DYNFRRFSLNNSPGKLTDISDRAPP--------- 70 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE---------------------S--GGGSS-SEEE-GGG--T---------
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCccc---CcccccccccCCCcceEEehhhCCc---------
Confidence 47899999998889999999999999876433221 0000000 0000000000001112211100000
Q ss_pred CeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEE
Q 008467 297 GQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS 375 (564)
Q Consensus 297 g~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (564)
.+ .+| .....+....++|++++.+.-| +++.|..+|++.|.|++....+..-.... .+
T Consensus 71 -~~----~~gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~------------~~--- 129 (395)
T PF08596_consen 71 -SL----KEGFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRE------------SF--- 129 (395)
T ss_dssp -T-----SEEEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG-----------------
T ss_pred -cc----ccccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccc------------cc---
Confidence 00 001 1123345568999999998555 88999999999999998766554321111 00
Q ss_pred eCCCeEEEEEcCCCceeeEecCCCcceEEEEEC-----CCC---CEEEEEeCCCcEEEEeCCC---Ceee----eecccc
Q 008467 376 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD-----PTG---SLLASCSDDVTAKIWNMKQ---DKYV----HDLREH 440 (564)
Q Consensus 376 ~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~-----~~~---~~las~s~dg~i~iwd~~~---~~~~----~~~~~~ 440 (564)
.-......|+++.|. .|+ -+++.|++.|.+.+|.+.- +... .....+
T Consensus 130 ------------------~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~ 191 (395)
T PF08596_consen 130 ------------------LSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNH 191 (395)
T ss_dssp ------------------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--S
T ss_pred ------------------cccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccC
Confidence 000011223334332 222 3577888888888887531 2121 111245
Q ss_pred cccEEEEEEc-cC-CCCCC-----------CCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEE-----cC
Q 008467 441 SKEIYTIRWS-PT-GSGTN-----------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF-----SP 502 (564)
Q Consensus 441 ~~~i~~i~~~-p~-~~~~~-----------~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~-----sp 502 (564)
.++|..|..- .+ |.... ...-..+++.+ .+..+|++...+.+..+...........+.+ ..
T Consensus 192 ~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~ 270 (395)
T PF08596_consen 192 DSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRN 270 (395)
T ss_dssp S----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EE
T ss_pred CCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceEEEeCCCCcccceeeccccccceEEEEeecccC
Confidence 5666665422 21 11000 00011233333 4678999999888776655422222334445 23
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCC-----EEEEEEccCCCEEEEEEcCCcEEEE
Q 008467 503 TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG-----IFEVCWNKEGDKIAACFANHTVCVL 560 (564)
Q Consensus 503 dg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~-----i~~~~w~~~g~~la~~~~~~~v~v~ 560 (564)
.+..|++-..+|.|++|.+..-+.+....-... +...+++++|+.+...+.. .+.++
T Consensus 271 ~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps-E~~l~ 332 (395)
T PF08596_consen 271 GGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS-EIQLF 332 (395)
T ss_dssp EEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS-EEEEE
T ss_pred CceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCcc-cEEEE
Confidence 577888899999999999998887776654321 2356778899877766433 44443
No 346
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.80 E-value=0.0004 Score=70.85 Aligned_cols=120 Identities=16% Similarity=0.234 Sum_probs=87.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeec--CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE
Q 008467 276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS--KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 353 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~--~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 353 (564)
..|.--+++..+++++.|+.-|.+.+|+..+.....+. +-.+.+..+..|++..+++.|+..|.|.++-++.+....
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~- 112 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD- 112 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc-
Confidence 34555567778899999999999999998776544333 355666777788888888899999999988765522110
Q ss_pred EeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008467 354 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 430 (564)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~ 430 (564)
..+++. ++ ..|...|+|++|++++..|.+|...|+|.+-.+..
T Consensus 113 ----------------~~~~t~--------~d----------~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 ----------------LDYVTP--------CD----------KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ----------------ceeecc--------cc----------ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 000000 00 12778899999999999999999999998887766
No 347
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.80 E-value=0.00066 Score=68.62 Aligned_cols=145 Identities=22% Similarity=0.245 Sum_probs=90.1
Q ss_pred CcceEEEEECCCCCEEEEEeC---C-CcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeE
Q 008467 399 QGEVNCVKWDPTGSLLASCSD---D-VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV 474 (564)
Q Consensus 399 ~~~i~~v~~~~~~~~las~s~---d-g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i 474 (564)
...+..-+|+|+++.++-.+. . ..+.++++.+++....+. ..+.-..-+|+|+|. .++.+...||..
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~--------~l~f~~~rdg~~ 262 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS--------KLAFSSSRDGSP 262 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC--------EEEEEECCCCCc
Confidence 345667789999987665432 2 358888988776543322 222234457777775 477777788865
Q ss_pred EE--EeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCeEEEEEecC-CCEEEEEEccCCCEE
Q 008467 475 KL--WDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL-DK--SMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKI 548 (564)
Q Consensus 475 ~i--wd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~-dg--~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~l 548 (564)
.| .|+..+. +..+..-.+.-..=.|+|||++|+-.+. .| .|.+.+...+.. ..++.. +.-....|+|||++|
T Consensus 263 ~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i 340 (425)
T COG0823 263 DIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKI 340 (425)
T ss_pred cEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEE
Confidence 54 5666555 3345433333335689999999986654 44 466667666554 222222 222277899999999
Q ss_pred EEEEcC
Q 008467 549 AACFAN 554 (564)
Q Consensus 549 a~~~~~ 554 (564)
+.....
T Consensus 341 ~~~~~~ 346 (425)
T COG0823 341 VFESSS 346 (425)
T ss_pred EEEecc
Confidence 988753
No 348
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.79 E-value=0.013 Score=56.24 Aligned_cols=252 Identities=13% Similarity=0.169 Sum_probs=137.1
Q ss_pred EEEECCCCCEEEEEeC----------CCeEEEEECCCce-eE--eecC-CCC----CEEEEEeCCCCCEEEEe--eCCCc
Q 008467 280 TLDWNGEGTLLATGSY----------DGQARIWSTNGDL-KC--TLSK-HKG----PIFSLKWNKKGDYLLTG--SCDKT 339 (564)
Q Consensus 280 ~l~~s~~g~~l~sg~~----------dg~i~vw~~~~~~-~~--~~~~-h~~----~V~~l~~~~~~~~l~s~--s~D~~ 339 (564)
.+..||+|+.+.+++. .-.|.+||...-. .. .+.. |.. ....+.++.+|++++.. +--.+
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 3567899988876532 2368899976421 11 2221 111 11235678899987765 44568
Q ss_pred EEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCC-CceeeE----ecCCCc-ceEEEEECCCCCE
Q 008467 340 AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NRPIKT----FAGHQG-EVNCVKWDPTGSL 413 (564)
Q Consensus 340 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~----~~~h~~-~i~~v~~~~~~~~ 413 (564)
|.|-|+..++++..+.... ...+-...+..|.+-+.||.+....++. +++... |..-.. .+..-++...+..
T Consensus 120 VtVVDl~~~kvv~ei~~PG--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~ 197 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDTPG--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGR 197 (342)
T ss_dssp EEEEETTTTEEEEEEEGTS--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTE
T ss_pred EEEEECCCCceeeeecCCC--EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCe
Confidence 9999999998887654322 2222233445788888899988888873 443321 111111 1223344444444
Q ss_pred EEEEeCCCcEEEEeCCCCeeee--ecccccccEEEEEEccCCCCC---CCCCCcEEE-EEEeCCC-------eEEEEeCC
Q 008467 414 LASCSDDVTAKIWNMKQDKYVH--DLREHSKEIYTIRWSPTGSGT---NNPNQQLIL-ASASFDS-------TVKLWDVE 480 (564)
Q Consensus 414 las~s~dg~i~iwd~~~~~~~~--~~~~~~~~i~~i~~~p~~~~~---~~~~~~~~l-~s~s~dg-------~i~iwd~~ 480 (564)
++--+.+|.|+--|+....... .+..-...-..-.|.|.|-.. +.+.+.+++ .--+.++ .|-++|+.
T Consensus 198 ~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~ 277 (342)
T PF06433_consen 198 LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK 277 (342)
T ss_dssp EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECC
Confidence 4456777877777765543211 110000000001355554321 112222222 2222222 37778999
Q ss_pred CCeEEEEEeCCCCCEEEEEEcCCCC-EEEEE-eCCCcEEEEeCCCCeEEEEEecCC
Q 008467 481 LGKLLYSLNGHREPVYSLAFSPTGE-YLASG-SLDKSMHIWSLKEGKIVKTYTGNG 534 (564)
Q Consensus 481 ~~~~~~~~~~h~~~i~~~~~spdg~-~lasg-s~dg~i~iw~~~~~~~~~~~~~~~ 534 (564)
+++.+.++.. ..++.+|+.+.|.+ +|.+. ..++.|.+||..+|+++++...-+
T Consensus 278 t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 278 THKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp TTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---S
T ss_pred CCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence 9999988863 34688999998875 66554 458999999999999999876543
No 349
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.76 E-value=0.05 Score=53.28 Aligned_cols=271 Identities=15% Similarity=0.203 Sum_probs=123.1
Q ss_pred EECCCCCEEEEE-eCCCeEE--EEECCCceeEeecCCCC-CEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeec
Q 008467 282 DWNGEGTLLATG-SYDGQAR--IWSTNGDLKCTLSKHKG-PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 357 (564)
Q Consensus 282 ~~s~~g~~l~sg-~~dg~i~--vw~~~~~~~~~~~~h~~-~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 357 (564)
+|.+||+.|+.+ ..||.-. +.|+.......+....+ ...+..++|+++.++-....++|+--|+.+.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 588899765554 4566544 44666666666655432 2335667888888766656678999999998766655554
Q ss_pred ccCeEEEEcC--CCceEEEE-----------------------eCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC
Q 008467 358 SGPTLDVDWR--NNVSFATS-----------------------STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS 412 (564)
Q Consensus 358 ~~~~~~~~~~--~~~~~~~~-----------------------~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~ 412 (564)
..-.-...|. .+...+.+ -....|+..++.++..-..+. -...+.-+.|+|...
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDP 200 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCC
Confidence 4322223331 11111111 011234444555444332222 234566788888654
Q ss_pred -EEEEEeC---CC-cEEEEeCCCCe-eeeeccccc--ccEEEEEEccCCCCCCCCCCcEEEEEE---eCCCeEEEEeCCC
Q 008467 413 -LLASCSD---DV-TAKIWNMKQDK-YVHDLREHS--KEIYTIRWSPTGSGTNNPNQQLILASA---SFDSTVKLWDVEL 481 (564)
Q Consensus 413 -~las~s~---dg-~i~iwd~~~~~-~~~~~~~~~--~~i~~i~~~p~~~~~~~~~~~~~l~s~---s~dg~i~iwd~~~ 481 (564)
+|+-|.+ +. .-|||-+++.. ....+..+. ..+.-=-|.|+|.. +...+. +.+..|.-+|+.+
T Consensus 201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~-------i~y~~~~~~~~~~~i~~~d~~t 273 (386)
T PF14583_consen 201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGST-------IWYDSYTPGGQDFWIAGYDPDT 273 (386)
T ss_dssp EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS--------EEEEEEETTT--EEEEEE-TTT
T ss_pred CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCE-------EEEEeecCCCCceEEEeeCCCC
Confidence 4555544 32 24778665322 122233222 22333468888752 111121 2234566677877
Q ss_pred CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCC----------------cEEEEeCCCCeEEEEEec---------CCC-
Q 008467 482 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK----------------SMHIWSLKEGKIVKTYTG---------NGG- 535 (564)
Q Consensus 482 ~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg----------------~i~iw~~~~~~~~~~~~~---------~~~- 535 (564)
++...... ..+....--++||+++|-=+.|. .|++++++.+........ +..
T Consensus 274 ~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~ 351 (386)
T PF14583_consen 274 GERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQV 351 (386)
T ss_dssp --EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSST
T ss_pred CCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCcc
Confidence 75432221 12344566689999987544432 567788887765332221 111
Q ss_pred -EEEEEEccCCCEEEEEE-cCCcEEEEEe
Q 008467 536 -IFEVCWNKEGDKIAACF-ANHTVCVLDF 562 (564)
Q Consensus 536 -i~~~~w~~~g~~la~~~-~~~~v~v~~~ 562 (564)
=..++|+|||+++...+ ..|..+||=+
T Consensus 352 ~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 352 THPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp T----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred CCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 24789999999887654 4677777643
No 350
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.64 E-value=0.065 Score=51.37 Aligned_cols=225 Identities=16% Similarity=0.140 Sum_probs=123.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE-----------
Q 008467 286 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF----------- 354 (564)
Q Consensus 286 ~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~----------- 354 (564)
.++.|+.|..+| +.+++...........+..+|..+...|+-+.|++-+ |+.+.++++.........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence 567899999988 8888873222222222344599999998877776654 599999998654332210
Q ss_pred --e-ecccCeEEEE---cCCCceEEEEeCCCeEEEEEcCCC-----ceeeEecCCCcceEEEEECCCCCEEEEEeCCCcE
Q 008467 355 --E-FHSGPTLDVD---WRNNVSFATSSTDNMIYVCKIGEN-----RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 423 (564)
Q Consensus 355 --~-~~~~~~~~~~---~~~~~~~~~~~~d~~i~~~~~~~~-----~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i 423 (564)
. .....+..+. ......++.......|.++..... +..+.+.- ...+.+++|. ++.|+.|..+ ..
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~~~~-~f 159 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVGTSK-GF 159 (275)
T ss_pred cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEEeCC-ce
Confidence 0 0111122222 223334444555557777766542 34444432 3567888888 5566666654 47
Q ss_pred EEEeCCCCeeeeeccccc------------ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE--EEe
Q 008467 424 KIWNMKQDKYVHDLREHS------------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY--SLN 489 (564)
Q Consensus 424 ~iwd~~~~~~~~~~~~~~------------~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~ 489 (564)
.+.|+.++....-+.... .++..+... ++ .+|++ .|..-.+.|. .|+... .+.
T Consensus 160 ~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-e~Ll~--~~~~g~fv~~-~G~~~r~~~i~ 226 (275)
T PF00780_consen 160 YLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS---------DN-EFLLC--YDNIGVFVNK-NGEPSRKSTIQ 226 (275)
T ss_pred EEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC---------Cc-eEEEE--ecceEEEEcC-CCCcCcccEEE
Confidence 778888665432221111 111111111 11 23332 2333333343 343322 222
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC
Q 008467 490 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 533 (564)
Q Consensus 490 ~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~ 533 (564)
-...+.++++. ..||++.+.+ .|.||++.+|+++++....
T Consensus 227 -W~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 227 -WSSAPQSVAYS--SPYLIAFSSN-SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred -cCCchhEEEEE--CCEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence 12344566663 4577776665 4999999999999988754
No 351
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.094 Score=52.85 Aligned_cols=188 Identities=15% Similarity=0.155 Sum_probs=126.2
Q ss_pred EcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC---CCcEEEEeCCCCeeeeeccccc
Q 008467 365 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD---DVTAKIWNMKQDKYVHDLREHS 441 (564)
Q Consensus 365 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~---dg~i~iwd~~~~~~~~~~~~~~ 441 (564)
.......++....++.|.+.+....+.+....--. ....++++|+++.+..+.. ++++.+.|..+.+.......-.
T Consensus 82 ~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~ 160 (381)
T COG3391 82 NPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN 160 (381)
T ss_pred CCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC
Confidence 33445567777777888888866555443332111 4557899999977655544 6889999988888776644333
Q ss_pred ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE-E----EeCCCCCEEEEEEcCCCCEEEEEeC---C
Q 008467 442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY-S----LNGHREPVYSLAFSPTGEYLASGSL---D 513 (564)
Q Consensus 442 ~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~----~~~h~~~i~~~~~spdg~~lasgs~---d 513 (564)
.+ ..+++.|+|. .+.++-..++.|.+.|........ . .... ..-..++++|+|.++...-. +
T Consensus 161 ~P-~~~a~~p~g~--------~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 161 TP-TGVAVDPDGN--------KVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred Cc-ceEEECCCCC--------eEEEEecCCCeEEEEeCCCcceeccccccccccC-CCCceEEECCCCCEEEEEeccCCC
Confidence 34 7788888775 244555678999999977555442 1 2212 23367899999996655433 3
Q ss_pred CcEEEEeCCCCeEEEE-EecCC-CEEEEEEccCCCEEEEEEc-CCcEEEEEee
Q 008467 514 KSMHIWSLKEGKIVKT-YTGNG-GIFEVCWNKEGDKIAACFA-NHTVCVLDFR 563 (564)
Q Consensus 514 g~i~iw~~~~~~~~~~-~~~~~-~i~~~~w~~~g~~la~~~~-~~~v~v~~~~ 563 (564)
+.+...|..++..... +.... ....+..+|+|+.+-+... .+.|.++|.+
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence 6999999999887765 33333 4667899999998877743 4778887753
No 352
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.62 E-value=0.058 Score=50.23 Aligned_cols=198 Identities=13% Similarity=0.210 Sum_probs=112.6
Q ss_pred eecCCCCCEEEEEeCCCCCE-EEEeeCCCcEEEEECCCcceeEEEeecc-cCeEEEEcCCCceEEEEe-CCCeEEEEEcC
Q 008467 311 TLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQFEFHS-GPTLDVDWRNNVSFATSS-TDNMIYVCKIG 387 (564)
Q Consensus 311 ~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~d~~i~~~~~~ 387 (564)
.+.+-...+.+|.|+|+.+. +++....+.|...+. .|++++.+.+.. +..-++.+..+..|+... .++.++++.+.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 45555667999999998664 556666778887886 577777776654 556778888888887766 47888888874
Q ss_pred CCc---e---eeEec-----CCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC---Ceee--eec------ccccccEE
Q 008467 388 ENR---P---IKTFA-----GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ---DKYV--HDL------REHSKEIY 445 (564)
Q Consensus 388 ~~~---~---~~~~~-----~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~---~~~~--~~~------~~~~~~i~ 445 (564)
... . +..+. .++..+-.++|+|.++.|+.+-+....+||.++. ...+ ... ......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 1 11121 2445688999999888777777777777776543 1111 111 11233467
Q ss_pred EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC---------CCEEEEEEcCCCCEEEEEeCCCcE
Q 008467 446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR---------EPVYSLAFSPTGEYLASGSLDKSM 516 (564)
Q Consensus 446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~---------~~i~~~~~spdg~~lasgs~dg~i 516 (564)
++.+.|... .+++-......|..+| ..|+.+..+.-.. ...-.|+|.++|++.++ |.-+..
T Consensus 175 ~l~~~p~t~--------~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlf 244 (248)
T PF06977_consen 175 GLSYDPRTG--------HLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLF 244 (248)
T ss_dssp EEEEETTTT--------EEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEE
T ss_pred ceEEcCCCC--------eEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceE
Confidence 778877542 3566677888999999 5577665543211 23678999999976655 466655
Q ss_pred EEE
Q 008467 517 HIW 519 (564)
Q Consensus 517 ~iw 519 (564)
++|
T Consensus 245 y~f 247 (248)
T PF06977_consen 245 YRF 247 (248)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 353
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0003 Score=70.86 Aligned_cols=93 Identities=20% Similarity=0.408 Sum_probs=77.2
Q ss_pred cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEE-EEEEcCCCCEEEEEeCCCcEEEE
Q 008467 441 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY-SLAFSPTGEYLASGSLDKSMHIW 519 (564)
Q Consensus 441 ~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~-~~~~spdg~~lasgs~dg~i~iw 519 (564)
...+..+.|+|.-. ++|.+..+|.|-+..+. .+.++++.-+..+++ +++|.|||+.||.|=.||+|++-
T Consensus 20 ~~~i~~~ewnP~~d---------LiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD---------LIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLH 89 (665)
T ss_pred ccceEEEEEcCccc---------hhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEE
Confidence 45678889998654 78999999999998877 777888887777777 99999999999999999999999
Q ss_pred eCCCCeEEEE--EecCCCEEEEEEcc
Q 008467 520 SLKEGKIVKT--YTGNGGIFEVCWNK 543 (564)
Q Consensus 520 ~~~~~~~~~~--~~~~~~i~~~~w~~ 543 (564)
|+.+|..+.. +.....|..+-|++
T Consensus 90 Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 90 DVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EccCCCceeccccccccchheeeccc
Confidence 9999988877 44455667777763
No 354
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.59 E-value=0.00026 Score=43.99 Aligned_cols=39 Identities=54% Similarity=0.961 Sum_probs=34.4
Q ss_pred CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467 482 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 520 (564)
Q Consensus 482 ~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~ 520 (564)
++++..+..|...|.++.|+|++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778888999999999999999999999999996
No 355
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.52 E-value=0.00027 Score=43.94 Aligned_cols=38 Identities=47% Similarity=0.823 Sum_probs=33.6
Q ss_pred ceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEe
Q 008467 390 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 427 (564)
Q Consensus 390 ~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd 427 (564)
.++..+..|...|.++.|++.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566778889999999999999999999999999996
No 356
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.49 E-value=0.0051 Score=65.00 Aligned_cols=179 Identities=12% Similarity=0.155 Sum_probs=94.0
Q ss_pred CCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe------CCCcEEEEeCCCCeeeeecccccccEEEEEEcc
Q 008467 378 DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS------DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 451 (564)
Q Consensus 378 d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s------~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p 451 (564)
+|.+...+-..-.|+.-..+....+...+++|+|+.+|... .|+.-.||-...+.....+.. ......-.|+|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t~PsWsp 406 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLTRPSWSL 406 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCCCceECC
Confidence 55554433222233333333334678899999999887665 354445554322221122221 22367788999
Q ss_pred CCCCCCC--CCCcEEEEE-EeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEE---EeCCCCe
Q 008467 452 TGSGTNN--PNQQLILAS-ASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHI---WSLKEGK 525 (564)
Q Consensus 452 ~~~~~~~--~~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~i---w~~~~~~ 525 (564)
+|..... .......++ ....+.+.+.++..+.... .....|..+.|||||..||... +|.|++ -....|.
T Consensus 407 DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~ 482 (591)
T PRK13616 407 DADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ 482 (591)
T ss_pred CCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence 8652100 000111111 1123444444555444322 2345799999999999988765 477777 4444554
Q ss_pred E-E---EEE-ecCCC-EEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 526 I-V---KTY-TGNGG-IFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 526 ~-~---~~~-~~~~~-i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
. + ..+ ..-+. +.++.|..+++.+ ++..++...||-+
T Consensus 483 ~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 483 YALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred eeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 1 1 011 12223 5789999999955 5555555555544
No 357
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00065 Score=68.56 Aligned_cols=79 Identities=25% Similarity=0.329 Sum_probs=70.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEE-EEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467 276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIF-SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 354 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~-~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 354 (564)
..|..+.|+|.-.++|++..+|.+.+...+-+...+++-|..+++ +++|.|+|+.|+.|-.||+|++.|+.++..+..+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF 100 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence 458889999999999999999999999888777777887877887 9999999999999999999999999998877664
No 358
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.43 E-value=0.19 Score=51.52 Aligned_cols=241 Identities=16% Similarity=0.244 Sum_probs=124.4
Q ss_pred ceEEEEECCCCCEEEEE-ECC----CcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEE
Q 008467 218 EVCACAWSPAGSLLASG-SGD----STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT 292 (564)
Q Consensus 218 ~V~~~~~sp~~~~lasg-s~D----~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~s 292 (564)
.+..+++||+|++||.+ +.. ..+++.|+.+++... ..+... .-..+.|.++++.|+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~---------d~i~~~---------~~~~~~W~~d~~~~~y 186 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP---------DGIENP---------KFSSVSWSDDGKGFFY 186 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE---------EEEEEE---------ESEEEEECTTSSEEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC---------Cccccc---------ccceEEEeCCCCEEEE
Confidence 34468899999988754 222 469999998764210 011110 1234899999988777
Q ss_pred EeCCC-----------eEEEEECCCce---eEeecCCCCC--EEEEEeCCCCCEEEEeeCC----CcEEEEECCCc----
Q 008467 293 GSYDG-----------QARIWSTNGDL---KCTLSKHKGP--IFSLKWNKKGDYLLTGSCD----KTAIVWDVKTE---- 348 (564)
Q Consensus 293 g~~dg-----------~i~vw~~~~~~---~~~~~~h~~~--V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~~---- 348 (564)
...+. .|+.|...... ...+.....+ ...+..++++++|+..+.. ..+.+.|+..+
T Consensus 187 ~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~ 266 (414)
T PF02897_consen 187 TRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPD 266 (414)
T ss_dssp EECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS
T ss_pred EEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCc
Confidence 66543 36777765432 2344443333 5678899999997654332 23666677664
Q ss_pred -ceeEEEeecccCeEEEEcCCCceEEEEe---CCCeEEEEEcCCCce---eeEecCCCc--ceEEEEECCCCCEEEEEeC
Q 008467 349 -EWKQQFEFHSGPTLDVDWRNNVSFATSS---TDNMIYVCKIGENRP---IKTFAGHQG--EVNCVKWDPTGSLLASCSD 419 (564)
Q Consensus 349 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~~~~~~~~~~---~~~~~~h~~--~i~~v~~~~~~~~las~s~ 419 (564)
.+........+....+...++..++.+. ..+.|...++..... ...+..|.. .+..+... .+.++++-..
T Consensus 267 ~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~Lvl~~~~ 345 (414)
T PF02897_consen 267 AKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF-KDYLVLSYRE 345 (414)
T ss_dssp -SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE-TTEEEEEEEE
T ss_pred CCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE-CCEEEEEEEE
Confidence 3333333233333445555555555443 345677777766542 224455554 34444443 2334455555
Q ss_pred CC--cEEEEeCCCCeeeeeccc-ccccEEEEEEccCCCCCCCCCCcEEEEEEeCC--CeEEEEeCCCCeE
Q 008467 420 DV--TAKIWNMKQDKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFD--STVKLWDVELGKL 484 (564)
Q Consensus 420 dg--~i~iwd~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d--g~i~iwd~~~~~~ 484 (564)
++ .|+++++..+.....+.. -.+.|..+...+.. ..+.+...|.- +++.-||+.+++.
T Consensus 346 ~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~-------~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 346 NGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDS-------DELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp TTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT--------SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCC-------CEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 55 477888873333332222 22334443322222 22334444433 5677777777764
No 359
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.43 E-value=0.06 Score=53.00 Aligned_cols=208 Identities=14% Similarity=0.158 Sum_probs=117.4
Q ss_pred cEEEEECCCcceeEEEeecccC-eE---EEEcCC-----CceEEEEeC---------C-CeEEEEEcCCC----ceeeEe
Q 008467 339 TAIVWDVKTEEWKQQFEFHSGP-TL---DVDWRN-----NVSFATSST---------D-NMIYVCKIGEN----RPIKTF 395 (564)
Q Consensus 339 ~v~iwd~~~~~~~~~~~~~~~~-~~---~~~~~~-----~~~~~~~~~---------d-~~i~~~~~~~~----~~~~~~ 395 (564)
.|++.|..+.+.+..+.+.... +. .+.+.. ...++.|.. . |.|+++.+... ..+...
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5777777777766666554432 22 222332 334444421 2 88999999884 222222
Q ss_pred --cCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-eeee-cccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008467 396 --AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK-YVHD-LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 471 (564)
Q Consensus 396 --~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~-~~~~-~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d 471 (564)
....+.|.+++-- .+.++++. .+.|.+|++...+ .... +......+.++....+ +++.|...
T Consensus 83 ~~~~~~g~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~-----------~I~vgD~~ 148 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN-----------YILVGDAM 148 (321)
T ss_dssp EEEEESS-EEEEEEE-TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT-----------EEEEEESS
T ss_pred EEEeecCcceEhhhh-CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEecccc-----------EEEEEEcc
Confidence 2346778888765 44444333 4789999988776 3322 1122235666655422 57778877
Q ss_pred CeEEEEeCCC-CeEEEEE--eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-------C--eEE--EEEecCCCEE
Q 008467 472 STVKLWDVEL-GKLLYSL--NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE-------G--KIV--KTYTGNGGIF 537 (564)
Q Consensus 472 g~i~iwd~~~-~~~~~~~--~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~-------~--~~~--~~~~~~~~i~ 537 (564)
..|.++..+. +..+..+ ......++++.|-+|++.++.+..+|.|.++.... + ++. ..+.-...|+
T Consensus 149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~ 228 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVN 228 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EE
T ss_pred cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccc
Confidence 7888774432 3322222 22345688999987778999999999999998763 2 222 3344455577
Q ss_pred EE---EEcc--CCC------EEEEEEcCCcEEEE
Q 008467 538 EV---CWNK--EGD------KIAACFANHTVCVL 560 (564)
Q Consensus 538 ~~---~w~~--~g~------~la~~~~~~~v~v~ 560 (564)
.+ +..| .+. .+..+..+|.+.++
T Consensus 229 ~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 229 SFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 66 5555 222 47888899988743
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.18 Score=50.78 Aligned_cols=217 Identities=18% Similarity=0.152 Sum_probs=140.2
Q ss_pred EEEEeCCCCCEEE-EeeCCCcEEEEECCCcceeEEEeeccc-CeEEEEcCCCceEEEEe--CCCeEEEEEcCCCceeeEe
Q 008467 320 FSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSS--TDNMIYVCKIGENRPIKTF 395 (564)
Q Consensus 320 ~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~d~~i~~~~~~~~~~~~~~ 395 (564)
.++..++.++.++ +...++.|.+.|..+............ ..+.+++.....+++-. .++.+.+.+-.+.+.+...
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~ 156 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI 156 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence 4567788887554 444568999999877776665544332 33445555556666666 4788888888888777664
Q ss_pred cCCCcceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCeeee-e---cccccccEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008467 396 AGHQGEVNCVKWDPTGSLLASC-SDDVTAKIWNMKQDKYVH-D---LREHSKEIYTIRWSPTGSGTNNPNQQLILASASF 470 (564)
Q Consensus 396 ~~h~~~i~~v~~~~~~~~las~-s~dg~i~iwd~~~~~~~~-~---~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~ 470 (564)
..-..+ ..++++|+|+.+..+ ..++.|.+.|........ . ...-...-..+.+.|++. .+.++...
T Consensus 157 ~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~--------~~yV~~~~ 227 (381)
T COG3391 157 PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGN--------RVYVANDG 227 (381)
T ss_pred ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCC--------EEEEEecc
Confidence 433334 789999999965554 478999999977655442 1 011112235677777774 22233322
Q ss_pred --CCeEEEEeCCCCeEEEE-EeCCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEEEEecCC----CEEEEEEc
Q 008467 471 --DSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTGEYLASGSL-DKSMHIWSLKEGKIVKTYTGNG----GIFEVCWN 542 (564)
Q Consensus 471 --dg~i~iwd~~~~~~~~~-~~~h~~~i~~~~~spdg~~lasgs~-dg~i~iw~~~~~~~~~~~~~~~----~i~~~~w~ 542 (564)
++.+...|..++..... ...-......+.++|+|+++.+... .+.+.+-|..+..+.+...... .+..+++.
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~ 307 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAIS 307 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccce
Confidence 36899999988777654 2211113466899999999887744 4889999999888877764322 25556665
Q ss_pred cCC
Q 008467 543 KEG 545 (564)
Q Consensus 543 ~~g 545 (564)
+..
T Consensus 308 ~~~ 310 (381)
T COG3391 308 PLY 310 (381)
T ss_pred eec
Confidence 544
No 361
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.38 E-value=0.077 Score=53.27 Aligned_cols=235 Identities=14% Similarity=0.233 Sum_probs=121.4
Q ss_pred CEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCC---------
Q 008467 318 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE--------- 388 (564)
Q Consensus 318 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~--------- 388 (564)
.|+.+.|.++..-|+.|-..|.|.||-....+... .....+..+..+. .+-.....+. +.|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~---~~~~~~~~~~--l~di~~r~~~~~~~g 75 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFR---RFSLNNSPGK--LTDISDRAPPSLKEG 75 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-----------------------S--GGGSS-S--EEE-GGG--TT-SEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccc---cccccCCCcc--eEEehhhCCcccccc
Confidence 58899999999999999999999998654332111 0000001110000 0000000000 111111
Q ss_pred CceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeee--ccc------ccccEEEEEEccCCCCCCCCC
Q 008467 389 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD--LRE------HSKEIYTIRWSPTGSGTNNPN 460 (564)
Q Consensus 389 ~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~--~~~------~~~~i~~i~~~p~~~~~~~~~ 460 (564)
-.|...+....++|++++.| |=.++|.|..+|.+.|.|++....+.. +.. ....++++.|..-... .+.-
T Consensus 76 f~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~-~D~y 153 (395)
T PF08596_consen 76 FLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLG-GDGY 153 (395)
T ss_dssp EEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-T-TSSS
T ss_pred cCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecC-CCcc
Confidence 12445555668899999997 667999999999999999988877654 222 2345788888743221 1122
Q ss_pred CcEEEEEEeCCCeEEEEeCCC---CeE----EEEEeCCCCCEEEEE-EcCC-C--------------------CEEEEEe
Q 008467 461 QQLILASASFDSTVKLWDVEL---GKL----LYSLNGHREPVYSLA-FSPT-G--------------------EYLASGS 511 (564)
Q Consensus 461 ~~~~l~s~s~dg~i~iwd~~~---~~~----~~~~~~h~~~i~~~~-~spd-g--------------------~~lasgs 511 (564)
....|..|...|.+.+|.+.- +.- ......+.++|..|. |+.+ | .++++++
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 345788899999999998641 211 112224667777665 5322 1 1344444
Q ss_pred CCCcEEEEeCCCCeEEEEEecCC-CEEEEEE-----ccCCCEEEEEEcCCcEEEEEe
Q 008467 512 LDKSMHIWSLKEGKIVKTYTGNG-GIFEVCW-----NKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 512 ~dg~i~iw~~~~~~~~~~~~~~~-~i~~~~w-----~~~g~~la~~~~~~~v~v~~~ 562 (564)
+..++|+...+.+..+...... ....+++ ...+..|++-+.+|.+.+|.+
T Consensus 234 -e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL 289 (395)
T PF08596_consen 234 -ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL 289 (395)
T ss_dssp -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred -ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence 5669999998877654433221 1223445 345677888889999999864
No 362
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.36 E-value=0.16 Score=48.94 Aligned_cols=247 Identities=14% Similarity=0.189 Sum_probs=129.5
Q ss_pred EEECCCCCEEEEEE----------CCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEE
Q 008467 222 CAWSPAGSLLASGS----------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 291 (564)
Q Consensus 222 ~~~sp~~~~lasgs----------~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~ 291 (564)
+..+|+++.+++++ ..-.|.+||..+-.. .....+...+ +.. .......+++|.||++++
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~--------~~EI~iP~k~-R~~-~~~~~~~~~ls~dgk~~~ 110 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP--------TGEIEIPPKP-RAQ-VVPYKNMFALSADGKFLY 110 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE--------EEEEEETTS--B---BS--GGGEEE-TTSSEEE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc--------cceEecCCcc-hhe-ecccccceEEccCCcEEE
Confidence 56789999887654 244688999765321 1111111000 000 001123357788888877
Q ss_pred EEeC--CCeEEEEECCCcee-EeecCCCCCEEEEEeCCC-CCEEEEeeCCCcEEEEECC-CcceeEEE----eecccCeE
Q 008467 292 TGSY--DGQARIWSTNGDLK-CTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVK-TEEWKQQF----EFHSGPTL 362 (564)
Q Consensus 292 sg~~--dg~i~vw~~~~~~~-~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~-~~~~~~~~----~~~~~~~~ 362 (564)
..-. --.|.|-|+..+.. ..+. -.+- ..+ + |. ...|.+-+.||++.-..+. .|+..+.- .....+++
T Consensus 111 V~N~TPa~SVtVVDl~~~kvv~ei~-~PGC-~~i-y-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f 186 (342)
T PF06433_consen 111 VQNFTPATSVTVVDLAAKKVVGEID-TPGC-WLI-Y-PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLF 186 (342)
T ss_dssp EEEESSSEEEEEEETTTTEEEEEEE-GTSE-EEE-E-EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-
T ss_pred EEccCCCCeEEEEECCCCceeeeec-CCCE-EEE-E-ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccc
Confidence 6543 34677777665433 2222 1221 111 1 22 2468888999999888876 44443221 11112222
Q ss_pred -EEEc-CCCceEEEEeCCCeEEEEEcCCCcee--eEecCC----------CcceEEEEECCCCCEEEEEe---C-----C
Q 008467 363 -DVDW-RNNVSFATSSTDNMIYVCKIGENRPI--KTFAGH----------QGEVNCVKWDPTGSLLASCS---D-----D 420 (564)
Q Consensus 363 -~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~--~~~~~h----------~~~i~~v~~~~~~~~las~s---~-----d 420 (564)
.-.+ .....++-.+-+|.|+..++....+. ..+.-- .+.-.-+++++..+.|..-- . |
T Consensus 187 ~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKd 266 (342)
T PF06433_consen 187 EHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKD 266 (342)
T ss_dssp S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS
T ss_pred cccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccC
Confidence 1112 23345666778888888888765432 122110 01223477777655544321 1 2
Q ss_pred C--cEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEE-EEeCCCeEEEEeCCCCeEEEEEeCC
Q 008467 421 V--TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA-SASFDSTVKLWDVELGKLLYSLNGH 491 (564)
Q Consensus 421 g--~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~h 491 (564)
+ .|-++|+.+++.+..+.. ..++.+|..+.+.. .+|. ....++.+.+||..+|+.+.++..-
T Consensus 267 pgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~--------P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 267 PGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDK--------PLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp -EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS---------EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred CceEEEEEECCCCeEEEEEeC-CCccceEEEccCCC--------cEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 2 367778999998877653 23567888876543 2444 4456899999999999999888643
No 363
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.33 E-value=0.012 Score=63.22 Aligned_cols=134 Identities=14% Similarity=0.177 Sum_probs=93.5
Q ss_pred eCCCcEEEEECCCcceeEEEeecccC-eEEEEcC------CCceEEEEeCCCeEEEEEcCCCc-eeeEecC----CCcce
Q 008467 335 SCDKTAIVWDVKTEEWKQQFEFHSGP-TLDVDWR------NNVSFATSSTDNMIYVCKIGENR-PIKTFAG----HQGEV 402 (564)
Q Consensus 335 s~D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~~----h~~~i 402 (564)
.....|.-.|+.+|+++..+..+... +.++... .+.....|-.++.++.||.+-.. .+..-.+ .....
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 34578899999999999999988754 6666542 22345567778889999876532 1111112 23468
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 008467 403 NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 479 (564)
Q Consensus 403 ~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 479 (564)
+|++-+.+|. ||.||.+|.||+||--..+.-..|.+-..+|..|..+.+|. .+|||| +..+-+++.
T Consensus 581 s~~aTt~~G~-iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGk--------wilaTc--~tyLlLi~t 646 (794)
T PF08553_consen 581 SCFATTEDGY-IAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGK--------WILATC--KTYLLLIDT 646 (794)
T ss_pred eEEEecCCce-EEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCc--------EEEEee--cceEEEEEE
Confidence 8898887764 78999999999999543333344556788999999999886 456665 466777774
No 364
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.32 E-value=6.7e-05 Score=75.37 Aligned_cols=122 Identities=18% Similarity=0.332 Sum_probs=82.7
Q ss_pred EccCCccceEEEEECC-CCCEEEEEE----CCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC
Q 008467 211 ILEGHTSEVCACAWSP-AGSLLASGS----GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 285 (564)
Q Consensus 211 ~l~~h~~~V~~~~~sp-~~~~lasgs----~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 285 (564)
+..+|....++++|++ |.++||.|- .|..+.|||+.+.-..+ .....+ .+ .....+.+++|-.
T Consensus 97 ~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvP------ke~~~f---s~---~~l~gqns~cwlr 164 (783)
T KOG1008|consen 97 VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVP------KESPLF---SS---STLDGQNSVCWLR 164 (783)
T ss_pred ecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCC------cccccc---cc---ccccCcccccccc
Confidence 4456778899999999 567787763 56789999998753221 111111 11 1123455889998
Q ss_pred CCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEEC
Q 008467 286 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDV 345 (564)
Q Consensus 286 ~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~ 345 (564)
+.+++.+|.....+.++|............+..|.++...| .++|+++-+ |+.|.+||.
T Consensus 165 d~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 165 DTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDT 224 (783)
T ss_pred CcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccc
Confidence 88999999999999999876443332233344566677777 667777665 999999993
No 365
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.0071 Score=60.08 Aligned_cols=139 Identities=11% Similarity=0.195 Sum_probs=91.6
Q ss_pred ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCE-------EEEEeCCCcEEEEeCCCCee--eeecccc
Q 008467 370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-------LASCSDDVTAKIWNMKQDKY--VHDLREH 440 (564)
Q Consensus 370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~-------las~s~dg~i~iwd~~~~~~--~~~~~~~ 440 (564)
..+..+.....++-.|+..++.+..+.-|.. |+-+.+.|+.+. -+.|-+|..|.-||++-... +.....|
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 3455566667788889999998888887766 777788876542 23466778888899873322 1111111
Q ss_pred c----ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEEeCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 008467 441 S----KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNGHREPVYSLAFSPTGEYLASGSLDKS 515 (564)
Q Consensus 441 ~----~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~i~~~~~spdg~~lasgs~dg~ 515 (564)
. ....|++ ..+. -+++.||.+|.||+||- .++. ...+.+...+|..|..+.||+||++.+ +..
T Consensus 426 qy~~k~nFsc~a--TT~s--------G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~ty 493 (644)
T KOG2395|consen 426 QYSTKNNFSCFA--TTES--------GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTY 493 (644)
T ss_pred ccccccccceee--ecCC--------ceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccE
Confidence 1 1112222 2222 26899999999999997 4443 344677788999999999999987554 445
Q ss_pred EEEEeC
Q 008467 516 MHIWSL 521 (564)
Q Consensus 516 i~iw~~ 521 (564)
+.+-++
T Consensus 494 LlLi~t 499 (644)
T KOG2395|consen 494 LLLIDT 499 (644)
T ss_pred EEEEEE
Confidence 655554
No 366
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.26 E-value=0.05 Score=42.99 Aligned_cols=91 Identities=13% Similarity=0.181 Sum_probs=63.9
Q ss_pred EEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEE-
Q 008467 463 LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCW- 541 (564)
Q Consensus 463 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w- 541 (564)
.-|+.||.|..||+|+-. ..+.++... ..|++++-... ..++-|-.+|+|-+|+-. ..+........+.++++
T Consensus 16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~~~~~~~~~ 89 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRIKSKNQVTSMAFY 89 (111)
T ss_pred ceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeeeccCCCeEEEEEE
Confidence 358889999999999754 677777754 46778877665 557778889999999753 33344444555666554
Q ss_pred --ccCC-CEEEEEEcCCcEEE
Q 008467 542 --NKEG-DKIAACFANHTVCV 559 (564)
Q Consensus 542 --~~~g-~~la~~~~~~~v~v 559 (564)
+.|| .-|++|..||.|-+
T Consensus 90 D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 90 DINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred cCCCCCceEEEEEecCCeEEe
Confidence 3344 37899999998743
No 367
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.25 E-value=0.21 Score=48.26 Aligned_cols=146 Identities=12% Similarity=0.156 Sum_probs=89.6
Q ss_pred cceEEEEECCCCCEEEEEeC-----C----CcEEEEeCC-CCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEe
Q 008467 400 GEVNCVKWDPTGSLLASCSD-----D----VTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS 469 (564)
Q Consensus 400 ~~i~~v~~~~~~~~las~s~-----d----g~i~iwd~~-~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s 469 (564)
...+.+...|+|.+.++... . ..-.||-+. .+..+.-+..+-..-..|+|+|++. .+.++=+
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~--------tly~aDT 182 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGK--------TLYVADT 182 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCC--------EEEEEeC
Confidence 34667888899988665443 0 112455554 3444444444344446789999885 2455555
Q ss_pred CCCeEEEEeCCC--C----eE-EEEEeCCCCCEEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCeEEEEEecC-CCEEEEE
Q 008467 470 FDSTVKLWDVEL--G----KL-LYSLNGHREPVYSLAFSPTGEYLASGSLDK-SMHIWSLKEGKIVKTYTGN-GGIFEVC 540 (564)
Q Consensus 470 ~dg~i~iwd~~~--~----~~-~~~~~~h~~~i~~~~~spdg~~lasgs~dg-~i~iw~~~~~~~~~~~~~~-~~i~~~~ 540 (564)
..+.|.-|++.. + +. ...+....+..-.++...+|.+.+++-.+| .|.+|+.. |+++..+.-. ..+..++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 667787777652 1 11 122222334456677788888886555554 89999988 9988888766 5677777
Q ss_pred Ec-cCCCEEEEEEcC
Q 008467 541 WN-KEGDKIAACFAN 554 (564)
Q Consensus 541 w~-~~g~~la~~~~~ 554 (564)
|- ++.+.|.+.+..
T Consensus 262 FgG~~~~~L~iTs~~ 276 (307)
T COG3386 262 FGGPDLNTLYITSAR 276 (307)
T ss_pred EeCCCcCEEEEEecC
Confidence 74 455666655444
No 368
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.25 E-value=0.0081 Score=64.53 Aligned_cols=135 Identities=15% Similarity=0.223 Sum_probs=91.8
Q ss_pred EeCCCeEEEEEcCCCceeeEecCCCcc-eEEEEECC-----CCCEEEEEeCCCcEEEEeCCCCe--eeee-cc--ccccc
Q 008467 375 SSTDNMIYVCKIGENRPIKTFAGHQGE-VNCVKWDP-----TGSLLASCSDDVTAKIWNMKQDK--YVHD-LR--EHSKE 443 (564)
Q Consensus 375 ~~~d~~i~~~~~~~~~~~~~~~~h~~~-i~~v~~~~-----~~~~las~s~dg~i~iwd~~~~~--~~~~-~~--~~~~~ 443 (564)
....+.++..|+..++.+..+..|... |..++-.. +..-.+.|-.+..+..||.+-.. ++.. .+ .....
T Consensus 500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 500 PNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN 579 (794)
T ss_pred CCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence 345678999999999999999887654 55543221 12334568888899999987542 2211 11 12233
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467 444 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 521 (564)
Q Consensus 444 i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~ 521 (564)
..|++-...| .||.||.+|.||+||- .|+. ...+.+-..||..|..+.||+||++.+ +..|.++++
T Consensus 580 Fs~~aTt~~G----------~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 580 FSCFATTEDG----------YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ceEEEecCCc----------eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 4555555444 6899999999999994 3433 334566789999999999999987655 445767775
No 369
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.25 E-value=0.33 Score=51.05 Aligned_cols=236 Identities=14% Similarity=0.093 Sum_probs=125.7
Q ss_pred CCEEEEeeCCCcEEEEECCCcceeEEEeeccc----CeEE-EEcCCCceEEEEe-----CCCeEEEEEcCCCceeeEecC
Q 008467 328 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG----PTLD-VDWRNNVSFATSS-----TDNMIYVCKIGENRPIKTFAG 397 (564)
Q Consensus 328 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~~~~ 397 (564)
+..++.++.|+.+...|..+++.+-.+..... .+.. -...++..++..+ .++.|+-++..+++.+-.+..
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 34677888999999999999987765443110 0000 0011333343322 257788878777654432211
Q ss_pred C-------------------------------Ccce-EEEEECCCCCEEEEEeCC-----C-----------cEEEEeCC
Q 008467 398 H-------------------------------QGEV-NCVKWDPTGSLLASCSDD-----V-----------TAKIWNMK 429 (564)
Q Consensus 398 h-------------------------------~~~i-~~v~~~~~~~~las~s~d-----g-----------~i~iwd~~ 429 (564)
- .+.+ ..+.++|...+|..+... + +|.--|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 0 0111 134667766666655522 2 45556777
Q ss_pred CCeeeeecccccccEEEEEE--ccCCCC-CCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE------------eCCC-C
Q 008467 430 QDKYVHDLREHSKEIYTIRW--SPTGSG-TNNPNQQLILASASFDSTVKLWDVELGKLLYSL------------NGHR-E 493 (564)
Q Consensus 430 ~~~~~~~~~~~~~~i~~i~~--~p~~~~-~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~------------~~h~-~ 493 (564)
+++..-.++.....+..... .|.-.. ..+.....+++.+..+|.+.+.|.++|+.+... .... .
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~ 359 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGR 359 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCC
Confidence 77776555432222221110 000000 000111247888999999999999999886321 0000 0
Q ss_pred CE----------------------------EEEEEcCCCCEEEEEeCC--------------------------------
Q 008467 494 PV----------------------------YSLAFSPTGEYLASGSLD-------------------------------- 513 (564)
Q Consensus 494 ~i----------------------------~~~~~spdg~~lasgs~d-------------------------------- 513 (564)
++ ..++|+|+..++.....+
T Consensus 360 p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~ 439 (527)
T TIGR03075 360 PIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDH 439 (527)
T ss_pred CccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCC
Confidence 11 125677766555432222
Q ss_pred -CcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 514 -KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 514 -g~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
|.|.-+|+.+|+++..+........-.....|..+.++..+|.+..+|.+
T Consensus 440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~ 490 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAK 490 (527)
T ss_pred ceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECC
Confidence 46888888888887766543221111112355667777778888888754
No 370
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.06 E-value=0.088 Score=49.02 Aligned_cols=194 Identities=14% Similarity=0.197 Sum_probs=104.3
Q ss_pred EccCCccceEEEEECCCCC-EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467 211 ILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 289 (564)
Q Consensus 211 ~l~~h~~~V~~~~~sp~~~-~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 289 (564)
.+.+-...+..++|+|+.. +++.....+.|...+.. |.. ++...- ....+.-.+++..++.+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~v-------------lr~i~l---~g~~D~EgI~y~g~~~~ 78 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKV-------------LRRIPL---DGFGDYEGITYLGNGRY 78 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---E-------------EEEEE----SS-SSEEEEEE-STTEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCE-------------EEEEeC---CCCCCceeEEEECCCEE
Confidence 3445556799999999855 55556667777666653 321 111111 11356788899888887
Q ss_pred EEEEeCCCeEEEEECCC--c---e--eE--e--e-cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC---cceeEEE
Q 008467 290 LATGSYDGQARIWSTNG--D---L--KC--T--L-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT---EEWKQQF 354 (564)
Q Consensus 290 l~sg~~dg~i~vw~~~~--~---~--~~--~--~-~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~---~~~~~~~ 354 (564)
+++--.++.+.+.+... . . .. . + ..++..+-+|+|+|.++.|+.+-...-..++.+.. .......
T Consensus 79 vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 79 VLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp EEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred EEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeec
Confidence 77766688888887621 1 1 01 1 1 13556789999999998888887666666776543 1111111
Q ss_pred e----------ecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEec--C-CC------cceEEEEECCCCCEEE
Q 008467 355 E----------FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA--G-HQ------GEVNCVKWDPTGSLLA 415 (564)
Q Consensus 355 ~----------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~--~-h~------~~i~~v~~~~~~~~la 415 (564)
. ......+.++...+..++.+.....+..++ ..++++..+. . .. ...-.|+|.++|++.+
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred cccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 0 011123344555667788888888888888 4455554432 2 11 2356899999997665
Q ss_pred EEeCCCcE
Q 008467 416 SCSDDVTA 423 (564)
Q Consensus 416 s~s~dg~i 423 (564)
++ +-+..
T Consensus 238 vs-EpNlf 244 (248)
T PF06977_consen 238 VS-EPNLF 244 (248)
T ss_dssp EE-TTTEE
T ss_pred Ec-CCceE
Confidence 44 54433
No 371
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.02 Score=61.71 Aligned_cols=76 Identities=24% Similarity=0.427 Sum_probs=61.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCceeE--eecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCe
Q 008467 286 EGTLLATGSYDGQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 361 (564)
Q Consensus 286 ~g~~l~sg~~dg~i~vw~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 361 (564)
.+..++.|+..|.+-..|..+.+.. .-..-.++|++++|+.+|..++.|-.+|.|.+||...++..+.+..+..+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV 175 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCcc
Confidence 3456888888899888887776542 223346899999999999999999999999999999988888777666553
No 372
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.03 E-value=0.059 Score=57.14 Aligned_cols=182 Identities=13% Similarity=0.209 Sum_probs=96.1
Q ss_pred cceEEEEECCCCCEEEEEE------CCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEE
Q 008467 217 SEVCACAWSPAGSLLASGS------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 290 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs------~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 290 (564)
..+...+.||+|+.+|... .|..-.||-...+... . .+ .. ....+.-.|+|+|..+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--------~--~l--t~------g~~~t~PsWspDG~~l 411 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--------V--QV--LE------GHSLTRPSWSLDADAV 411 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--------e--ee--ec------CCCCCCceECCCCCce
Confidence 3567889999998776654 3555566644321100 0 00 00 1236677899999887
Q ss_pred EEEeCC-CeEEEEE-----------CCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEE---EECCCcceeE---
Q 008467 291 ATGSYD-GQARIWS-----------TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIV---WDVKTEEWKQ--- 352 (564)
Q Consensus 291 ~sg~~d-g~i~vw~-----------~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~i---wd~~~~~~~~--- 352 (564)
++.... ..+++.+ .++..... ...+.|..++|+|||.+++... ++.|.+ -....+...-
T Consensus 412 w~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~ 488 (591)
T PRK13616 412 WVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNP 488 (591)
T ss_pred EEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeeccc
Confidence 776532 2233332 22211111 3356799999999999987665 467766 3333443111
Q ss_pred -EEeecc-cCeEEEEcCCCceEEEEeCCCe--EEEEEcCCCceeeEecC--CCcceEEEEECCCCCEEEEEeCCCc
Q 008467 353 -QFEFHS-GPTLDVDWRNNVSFATSSTDNM--IYVCKIGENRPIKTFAG--HQGEVNCVKWDPTGSLLASCSDDVT 422 (564)
Q Consensus 353 -~~~~~~-~~~~~~~~~~~~~~~~~~~d~~--i~~~~~~~~~~~~~~~~--h~~~i~~v~~~~~~~~las~s~dg~ 422 (564)
.+.... ..+.++.|..+..++....+.. ++...++..... .+.+ ....+..|+-+++ . ++....++.
T Consensus 489 ~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~-~-iyv~~~~g~ 561 (591)
T PRK13616 489 REVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS-T-VYVTDARAV 561 (591)
T ss_pred EEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc-e-EEEEcCCce
Confidence 112222 2357789988877766544443 444344322211 1122 2445666666652 2 334444553
No 373
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.93 E-value=0.43 Score=46.14 Aligned_cols=216 Identities=14% Similarity=0.125 Sum_probs=105.9
Q ss_pred ECCCCC-EEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecc-c-
Q 008467 283 WNGEGT-LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-G- 359 (564)
Q Consensus 283 ~s~~g~-~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~- 359 (564)
|.++.. ++.+--..+.|.-|+........+. +.+.+.++..-..+..|+++. .-+.++++.++..+..+.... +
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~ 108 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKKRVFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGL 108 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCceEEEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCC
Confidence 555555 4445556677888877544333333 223334444444444555543 346666765555432221111 1
Q ss_pred ---CeEEEEcCCCceEEEEeCC----------CeEEEEEcC-CCceeeEecCCCcceEEEEECCCCCEEEEEeC-CCcEE
Q 008467 360 ---PTLDVDWRNNVSFATSSTD----------NMIYVCKIG-ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAK 424 (564)
Q Consensus 360 ---~~~~~~~~~~~~~~~~~~d----------~~i~~~~~~-~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg~i~ 424 (564)
...+.....+..|..+... ..-.+|.+. .+..++.+.+|-..-+.++||||++.|..+-. .+.|.
T Consensus 109 ~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~ 188 (307)
T COG3386 109 PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIH 188 (307)
T ss_pred CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEE
Confidence 1122222222233222222 011344444 34455555555566789999999987665544 47777
Q ss_pred EEeCCCCeeeeecccccccEEEEEE-----ccCCCCCCCCCCcEEEEEEeCCC-eEEEEeCCCCeEEEEEeCCCCCEEEE
Q 008467 425 IWNMKQDKYVHDLREHSKEIYTIRW-----SPTGSGTNNPNQQLILASASFDS-TVKLWDVELGKLLYSLNGHREPVYSL 498 (564)
Q Consensus 425 iwd~~~~~~~~~~~~~~~~i~~i~~-----~p~~~~~~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~h~~~i~~~ 498 (564)
-|++... ....... ...+.+ .|+|.. ...+..++. ++-.+| .|.+|+.. |+++..+.-....++++
T Consensus 189 r~~~d~~----~g~~~~~-~~~~~~~~~~G~PDG~~-vDadG~lw~-~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~ 260 (307)
T COG3386 189 RYDLDPA----TGPIGGR-RGFVDFDEEPGLPDGMA-VDADGNLWV-AAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNP 260 (307)
T ss_pred EEecCcc----cCccCCc-ceEEEccCCCCCCCceE-EeCCCCEEE-ecccCCceEEEECCC-CcEEEEEECCCCCCccc
Confidence 7766520 0000111 111111 233321 112233333 333333 89999988 88888777655667778
Q ss_pred EEc-CCCCEEEE
Q 008467 499 AFS-PTGEYLAS 509 (564)
Q Consensus 499 ~~s-pdg~~las 509 (564)
+|- |+.+.|..
T Consensus 261 ~FgG~~~~~L~i 272 (307)
T COG3386 261 AFGGPDLNTLYI 272 (307)
T ss_pred eEeCCCcCEEEE
Confidence 874 44454443
No 374
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.92 E-value=0.0037 Score=55.50 Aligned_cols=106 Identities=17% Similarity=0.245 Sum_probs=71.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC
Q 008467 411 GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG 490 (564)
Q Consensus 411 ~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 490 (564)
+.-++.|+.+|.|.+|..........+.........+ --|.+. ...+..+++.||.||.|++.-++.+.....
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~-~Ip~~~------~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~ 142 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDL-GIPNGR------DSSLGCVGAQDGRIRACNIKPNKVLGYVGQ 142 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhccccccee-cccccc------ccceeEEeccCCceeeeccccCceeeeecc
Confidence 3568899999999999876322211111111111111 113332 123788899999999999998888888877
Q ss_pred CC-CCEEEEEEcCCCCEEEEE--eCCCcEEEEeCCC
Q 008467 491 HR-EPVYSLAFSPTGEYLASG--SLDKSMHIWSLKE 523 (564)
Q Consensus 491 h~-~~i~~~~~spdg~~lasg--s~dg~i~iw~~~~ 523 (564)
|. .++.....+..+++|+.+ |.|..++.|++..
T Consensus 143 h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 143 HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 87 677777777778888888 8888888888764
No 375
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.85 E-value=0.056 Score=42.70 Aligned_cols=96 Identities=20% Similarity=0.286 Sum_probs=60.7
Q ss_pred EECCCC-CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 008467 223 AWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARI 301 (564)
Q Consensus 223 ~~sp~~-~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~v 301 (564)
.|.-+| +-|+.||.|..||+|+=.. .+... .....|++++-... ..|+.|..+|+|-+
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~e---------------~~~Ei-----~e~~~v~~L~~~~~-~~F~Y~l~NGTVGv 67 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGDE---------------IVAEI-----TETDKVTSLCSLGG-GRFAYALANGTVGV 67 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCCc---------------EEEEE-----ecccceEEEEEcCC-CEEEEEecCCEEEE
Confidence 344454 5899999999999997321 11111 12456888876665 66899999999999
Q ss_pred EECCCceeEeecCCCCCEEEEEeCC---CC-CEEEEeeCCCcEE
Q 008467 302 WSTNGDLKCTLSKHKGPIFSLKWNK---KG-DYLLTGSCDKTAI 341 (564)
Q Consensus 302 w~~~~~~~~~~~~h~~~V~~l~~~~---~~-~~l~s~s~D~~v~ 341 (564)
|+....+-..-..|. ++++.+.. +| ..|++|=.+|.|-
T Consensus 68 Y~~~~RlWRiKSK~~--~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 68 YDRSQRLWRIKSKNQ--VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EeCcceeeeeccCCC--eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 986544433323333 55555433 23 3578887777653
No 376
>PRK13684 Ycf48-like protein; Provisional
Probab=96.84 E-value=0.58 Score=46.21 Aligned_cols=148 Identities=15% Similarity=0.192 Sum_probs=81.0
Q ss_pred CcceEEEEECCCCCEEEEEeCCCcEE-EEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEE
Q 008467 399 QGEVNCVKWDPTGSLLASCSDDVTAK-IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 477 (564)
Q Consensus 399 ~~~i~~v~~~~~~~~las~s~dg~i~-iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iw 477 (564)
.+.+.++.+.|++.+++++. .|.+. .++-...........-...++++.+.|++. +++. +..|.+++=
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~---------~~~v-g~~G~~~~~ 240 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN---------LWML-ARGGQIRFN 240 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC---------EEEE-ecCCEEEEc
Confidence 45688899999987776554 45443 222221111111223345678888887764 3333 456766542
Q ss_pred eCCCCeEEEEEeC----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec----CCCEEEEEEccCCCEEE
Q 008467 478 DVELGKLLYSLNG----HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG----NGGIFEVCWNKEGDKIA 549 (564)
Q Consensus 478 d~~~~~~~~~~~~----h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~----~~~i~~~~w~~~g~~la 549 (564)
....|..-..... -...+.+++|.|++..+++| .+|.|. .....|+--..... ....+.+.|..+++.++
T Consensus 241 s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (334)
T PRK13684 241 DPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV 318 (334)
T ss_pred cCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE
Confidence 3333332221111 12357889999988866654 566553 44444443222211 12478888888888877
Q ss_pred EEEcCCcEEEE
Q 008467 550 ACFANHTVCVL 560 (564)
Q Consensus 550 ~~~~~~~v~v~ 560 (564)
+| ..|.|..+
T Consensus 319 ~G-~~G~il~~ 328 (334)
T PRK13684 319 LG-QRGVLLRY 328 (334)
T ss_pred EC-CCceEEEe
Confidence 77 55666544
No 377
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.79 E-value=0.14 Score=51.36 Aligned_cols=45 Identities=20% Similarity=0.331 Sum_probs=37.4
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec
Q 008467 488 LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG 532 (564)
Q Consensus 488 ~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~ 532 (564)
+......+.+|+.+|++++.|+...=|+|.++|+.++.+++.|++
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKG 347 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKG 347 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhcc
Confidence 444455689999999999988887779999999999988877765
No 378
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.75 E-value=0.15 Score=48.05 Aligned_cols=144 Identities=15% Similarity=0.187 Sum_probs=83.9
Q ss_pred ceEEEEECCCCCEEEEEe--C-CCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEE
Q 008467 401 EVNCVKWDPTGSLLASCS--D-DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 477 (564)
Q Consensus 401 ~i~~v~~~~~~~~las~s--~-dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iw 477 (564)
.+.+.+++++++.+|... . ...+.++.. +.....+. ....+..-.|.+++. +.+....+...+++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~---------~W~v~~~~~~~~~~ 92 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGW---------VWTVDDGSGGVRVV 92 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCC---------EEEEEcCCCceEEE
Confidence 678899999999877665 2 234444443 33222221 223566667777753 34444455566666
Q ss_pred e-CCCCeEE-EEEeC--CCCCEEEEEEcCCCCEEEEEe---CCCcEEEEeCC---CC---eEEEEE----ecCCCEEEEE
Q 008467 478 D-VELGKLL-YSLNG--HREPVYSLAFSPTGEYLASGS---LDKSMHIWSLK---EG---KIVKTY----TGNGGIFEVC 540 (564)
Q Consensus 478 d-~~~~~~~-~~~~~--h~~~i~~~~~spdg~~lasgs---~dg~i~iw~~~---~~---~~~~~~----~~~~~i~~~~ 540 (564)
. ...+... ..+.. -...|..+.+||||..+|.-. .++.|.|=-+. .| .+.... .....+.+++
T Consensus 93 ~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~ 172 (253)
T PF10647_consen 93 RDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVA 172 (253)
T ss_pred EecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeee
Confidence 3 3333321 12211 112899999999999887654 35677776543 23 111111 1134688999
Q ss_pred EccCCCEEEEEEcCCc
Q 008467 541 WNKEGDKIAACFANHT 556 (564)
Q Consensus 541 w~~~g~~la~~~~~~~ 556 (564)
|.+++..++.+...+.
T Consensus 173 W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 173 WSDDSTLVVLGRSAGG 188 (253)
T ss_pred ecCCCEEEEEeCCCCC
Confidence 9999998887766544
No 379
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.71 E-value=0.62 Score=44.82 Aligned_cols=266 Identities=15% Similarity=0.210 Sum_probs=120.4
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEe---ecCC---CCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc
Q 008467 275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCT---LSKH---KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 348 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~---~~~h---~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~ 348 (564)
..++..|.|..+..-+++|. .|.| +-..+|...-. .... .-...++.|..+ ..+++ +..+.+ +.....+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g~l-l~T~DgG 90 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPGLL-LHTTDGG 90 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETTEE-EEESSTT
T ss_pred CCceEEEEEecCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCceE-EEecCCC
Confidence 45789999996666666655 4543 22334321111 1111 123566777543 33444 444433 3333333
Q ss_pred -ceeEEEee--cccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEE
Q 008467 349 -EWKQQFEF--HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 425 (564)
Q Consensus 349 -~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~i 425 (564)
.+...... ..+....+...++......+..+.|+.-.-....=.....+-.+.+..+.-++||++++.++.-....-
T Consensus 91 ~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s 170 (302)
T PF14870_consen 91 KTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSS 170 (302)
T ss_dssp SS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEE
T ss_pred CCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEE
Confidence 23322110 112222232222333333344455443222111111122334467888888999999888876666678
Q ss_pred EeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC-CCCeEEEE----EeCCCCCEEEEEE
Q 008467 426 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV-ELGKLLYS----LNGHREPVYSLAF 500 (564)
Q Consensus 426 wd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~-~~~~~~~~----~~~h~~~i~~~~~ 500 (564)
||.-.......-+.-...|..+.|.|++. +++ ....|.|++=+. .....-.. +..-.-.+.+++|
T Consensus 171 ~~~G~~~w~~~~r~~~~riq~~gf~~~~~--------lw~--~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~ 240 (302)
T PF14870_consen 171 WDPGQTTWQPHNRNSSRRIQSMGFSPDGN--------LWM--LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAY 240 (302)
T ss_dssp E-TT-SS-EEEE--SSS-EEEEEE-TTS---------EEE--EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEE
T ss_pred ecCCCccceEEccCccceehhceecCCCC--------EEE--EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEe
Confidence 88654322222334567899999999864 233 337788888772 22222111 1112234899999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec----CCCEEEEEEccCCCEEEEEEcCCcEE
Q 008467 501 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG----NGGIFEVCWNKEGDKIAACFANHTVC 558 (564)
Q Consensus 501 spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~----~~~i~~~~w~~~g~~la~~~~~~~v~ 558 (564)
.+++...|+|+.. .+ +.....|+-=+.... ....+.+.|..+.+-++.| .+|.+-
T Consensus 241 ~~~~~~wa~gg~G-~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll 299 (302)
T PF14870_consen 241 RPPNEIWAVGGSG-TL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLL 299 (302)
T ss_dssp SSSS-EEEEESTT--E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEE
T ss_pred cCCCCEEEEeCCc-cE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEE
Confidence 9998888877654 33 445555654333322 3457899998777777776 666553
No 380
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.46 E-value=1.8 Score=47.11 Aligned_cols=320 Identities=15% Similarity=0.203 Sum_probs=163.8
Q ss_pred cceEEEEECCCC---C---EEEEEECCCcEEEEeC-CCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467 217 SEVCACAWSPAG---S---LLASGSGDSTARIWTI-ADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 289 (564)
Q Consensus 217 ~~V~~~~~sp~~---~---~lasgs~D~~i~iW~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 289 (564)
.+|.|+.++|-| + ++|.|..+..+.+-.. ++... .......+.. ....|....+-.|..+
T Consensus 531 ~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~-----------~~~~~l~~~~--iPRSIl~~~~e~d~~y 597 (1096)
T KOG1897|consen 531 YEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL-----------ITHEQLSGEI--IPRSILLTTFEGDIHY 597 (1096)
T ss_pred ceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce-----------eeeeccCCCc--cchheeeEEeeccceE
Confidence 679999999852 2 7888887666554432 22211 0111111111 1244667778888899
Q ss_pred EEEEeCCCeEEEEECC---CceeEe--ecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEE
Q 008467 290 LATGSYDGQARIWSTN---GDLKCT--LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 364 (564)
Q Consensus 290 l~sg~~dg~i~vw~~~---~~~~~~--~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 364 (564)
|.++..||.+..+..+ |.+... ..--+.|+.=-.|+..+..-+-+.+|+-..+|.-+..-+...+... .+..+
T Consensus 598 LlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~k--ev~~~ 675 (1096)
T KOG1897|consen 598 LLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLK--EVNHM 675 (1096)
T ss_pred EEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchH--Hhhhh
Confidence 9999999999877543 221111 1112345555567666655555556777777754332222211111 11112
Q ss_pred EcC-CC--ceEEEEeCCCeEEEEEcCCCc--eeeEecCCCcceEEEEECCCCCEEEEEeCC--------------CcEEE
Q 008467 365 DWR-NN--VSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPTGSLLASCSDD--------------VTAKI 425 (564)
Q Consensus 365 ~~~-~~--~~~~~~~~d~~i~~~~~~~~~--~~~~~~~h~~~i~~v~~~~~~~~las~s~d--------------g~i~i 425 (564)
+.. ++ ...+.....+.+.+..++.-+ .+++..-| .....+++.+...++++.+.- ..+++
T Consensus 676 c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~v 754 (1096)
T KOG1897|consen 676 CPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRV 754 (1096)
T ss_pred cccccccCCceEEEecCCceEEEEecchhhcceeeecCC-CChhheEecccceEEEEEecccccchhhcCCcceEEEEEE
Confidence 211 11 112333344555555554322 22232211 234456666644444444331 13566
Q ss_pred EeCCCCeeeeeccc-ccc---cEEEEEEccCCCCCCCCCCcEEEEEEe----------CCCeEEEEeCCCCeEEEEEeC-
Q 008467 426 WNMKQDKYVHDLRE-HSK---EIYTIRWSPTGSGTNNPNQQLILASAS----------FDSTVKLWDVELGKLLYSLNG- 490 (564)
Q Consensus 426 wd~~~~~~~~~~~~-~~~---~i~~i~~~p~~~~~~~~~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~- 490 (564)
+|-++-+.++.... ... .|.+..|..+ |+ .+++.|. ..|.|.|+....++.+..+..
T Consensus 755 lD~nTf~vl~~hef~~~E~~~Si~s~~~~~d------~~--t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~ 826 (1096)
T KOG1897|consen 755 LDQNTFEVLSSHEFERNETALSIISCKFTDD------PN--TYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAET 826 (1096)
T ss_pred ecCCceeEEeeccccccceeeeeeeeeecCC------Cc--eEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeee
Confidence 77666554432211 111 2333334333 11 2344432 135555665544222222211
Q ss_pred -CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE-EecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 491 -HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT-YTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 491 -h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~-~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
-.+.++++.- -+|++||. -...|++|++.+.+.++. ......+..+.....|+.+|+|..-+++.+.-+|
T Consensus 827 ~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~ 898 (1096)
T KOG1897|consen 827 VVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYK 898 (1096)
T ss_pred eeccceeehhh-hCCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEe
Confidence 1244555532 25777764 556799999988754433 3334568888899999999999888888777655
No 381
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.45 E-value=0.55 Score=49.87 Aligned_cols=222 Identities=14% Similarity=0.252 Sum_probs=112.1
Q ss_pred CCCEEEEEeCCC------eEEEEECCCceeEeecC--CCCCEEEEEeCCCCCEEEEeeCC------CcEEEEECCCccee
Q 008467 286 EGTLLATGSYDG------QARIWSTNGDLKCTLSK--HKGPIFSLKWNKKGDYLLTGSCD------KTAIVWDVKTEEWK 351 (564)
Q Consensus 286 ~g~~l~sg~~dg------~i~vw~~~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s~s~D------~~v~iwd~~~~~~~ 351 (564)
.+.+++.||.++ .+..+|........+.. +...-.+++.. ++...++|+.| .++..||..+.+|.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 456677777763 56667765442222111 12223334433 34667788888 36789999999887
Q ss_pred EEEeeccc-CeEEEEcCCCceEEEEeCCCe-----EEEEEcCCCc--eeeEecCCCcceEEEEECCCCCEEEEEeCCC--
Q 008467 352 QQFEFHSG-PTLDVDWRNNVSFATSSTDNM-----IYVCKIGENR--PIKTFAGHQGEVNCVKWDPTGSLLASCSDDV-- 421 (564)
Q Consensus 352 ~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~-----i~~~~~~~~~--~~~~~~~h~~~i~~v~~~~~~~~las~s~dg-- 421 (564)
..-..... ....+.-.++..++.++.|+. +-.||..+++ .+..+.......-.+. -+|.+.+.|+.++
T Consensus 363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSS 440 (571)
T ss_pred ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCc
Confidence 64333221 223445556778888888764 4445544432 1111111111121222 2688888888665
Q ss_pred ----cEEEEeCCCCeeee--ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC-----eEEEEeCCCCeE--EEEE
Q 008467 422 ----TAKIWNMKQDKYVH--DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS-----TVKLWDVELGKL--LYSL 488 (564)
Q Consensus 422 ----~i~iwd~~~~~~~~--~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~--~~~~ 488 (564)
++..||..+..... .+........ ++.- + ..+.+.|+.|+ +|..+|..+.+- +..+
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~---------~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m 509 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-N---------GKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM 509 (571)
T ss_pred cccceEEEEcCCCCceeecCCcccccccce-EEEE-C---------CEEEEECCccCCCccceEEEEcCCCCceeEcccC
Confidence 45677776654321 1111100001 1110 1 13566677666 367788775542 2222
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCC
Q 008467 489 NGHREPVYSLAFSPTGEYLASGSLDK-----SMHIWSLKE 523 (564)
Q Consensus 489 ~~h~~~i~~~~~spdg~~lasgs~dg-----~i~iw~~~~ 523 (564)
......+..+.. +++..|+|+.|| +|-.||..+
T Consensus 510 ~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 510 TSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred ccccccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence 222232222322 567778888776 355555443
No 382
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.38 E-value=0.77 Score=41.98 Aligned_cols=257 Identities=15% Similarity=0.125 Sum_probs=125.7
Q ss_pred CEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeeccc-CeEEEE
Q 008467 288 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-PTLDVD 365 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-~~~~~~ 365 (564)
++++.|+-.+.+..-|.. |.+...- --...|.+-+.- -|++++.|...|.+.+-+.++|+....|..... .+....
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~-ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~ 101 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEA-ILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC 101 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeeh-hhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence 456666666666655543 2222110 001111111111 367899999999999999999976655543221 111112
Q ss_pred cCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeeeeecccc--cc
Q 008467 366 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREH--SK 442 (564)
Q Consensus 366 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~~~--~~ 442 (564)
-.+...+..++-|+..+..|......+...+-..+...+-+..| ++.+.+ +...|.+.--..+.. ..+++-.| .+
T Consensus 102 d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~-a~t~G~vlavt~~~~-~~~~~w~~~~~~ 179 (354)
T KOG4649|consen 102 DFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYA-AITAGAVLAVTKNPY-SSTEFWAATRFG 179 (354)
T ss_pred cCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEE-EeccceEEEEccCCC-CcceehhhhcCC
Confidence 22344566778899999988887777665543333344445555 444433 333343322222211 11112111 12
Q ss_pred cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEE-EEEc-CCCCEEEEEeCCCcE----
Q 008467 443 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS-LAFS-PTGEYLASGSLDKSM---- 516 (564)
Q Consensus 443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~-~~~s-pdg~~lasgs~dg~i---- 516 (564)
+|.+ +|.-- . + .+.-+.-||.+.-+| ..|+.++... ..+||.. -+-| |..+.|..+..+..+
T Consensus 180 PiF~---splcv-----~-~-sv~i~~VdG~l~~f~-~sG~qvwr~~-t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p 247 (354)
T KOG4649|consen 180 PIFA---SPLCV-----G-S-SVIITTVDGVLTSFD-ESGRQVWRPA-TKGPIFMEPCESRPSCQQISLENENCFCAPLP 247 (354)
T ss_pred cccc---Cceec-----c-c-eEEEEEeccEEEEEc-CCCcEEEeec-CCCceecccccCCCcceEEEEecCCeEEEecc
Confidence 2211 01000 0 0 233455678887777 5677776554 2334322 1112 444444444444332
Q ss_pred ----EEEeCCCCeEEEEEecCCCEEEEEEcc-C---CCEEEEEEcCCcEEEEEe
Q 008467 517 ----HIWSLKEGKIVKTYTGNGGIFEVCWNK-E---GDKIAACFANHTVCVLDF 562 (564)
Q Consensus 517 ----~iw~~~~~~~~~~~~~~~~i~~~~w~~-~---g~~la~~~~~~~v~v~~~ 562 (564)
.+|..+.|.....|-... ..++++. . .+.|+.++.||.+.|+-.
T Consensus 248 ~~ghL~w~~~~g~t~~vy~~p~--l~F~~h~~~~S~~~ll~~~s~dgkv~il~~ 299 (354)
T KOG4649|consen 248 IAGHLLWATQSGTTLHVYLSPK--LRFDLHSPGISYPKLLRRSSGDGKVMILMT 299 (354)
T ss_pred ccceEEEEecCCcEEEEEeCcc--cceeccCCCCcchhhhhhhcCCCcEEEEEe
Confidence 356666665444443211 1122222 1 247778888998888743
No 383
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.38 E-value=1.4 Score=45.03 Aligned_cols=239 Identities=15% Similarity=0.179 Sum_probs=119.1
Q ss_pred eEEEEECCCCCEEEEE-eCCC----eEEEEECCCcee-E-eecCCCCCEEEEEeCCCCCEEEEeeCCC-----------c
Q 008467 278 VTTLDWNGEGTLLATG-SYDG----QARIWSTNGDLK-C-TLSKHKGPIFSLKWNKKGDYLLTGSCDK-----------T 339 (564)
Q Consensus 278 V~~l~~s~~g~~l~sg-~~dg----~i~vw~~~~~~~-~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~-----------~ 339 (564)
+....+||+|+++|.+ +..| .++++|+..... . .+.... -..+.|.++++.|+-...|. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 4467899999998876 3334 589999865422 1 222111 12399999998876655433 3
Q ss_pred EEEEECCCccee--EEEeecccC--eEEEEcCCCce--EEEEe--CC-CeEEEEEcCCC-----ceeeEecCCCcceEEE
Q 008467 340 AIVWDVKTEEWK--QQFEFHSGP--TLDVDWRNNVS--FATSS--TD-NMIYVCKIGEN-----RPIKTFAGHQGEVNCV 405 (564)
Q Consensus 340 v~iwd~~~~~~~--~~~~~~~~~--~~~~~~~~~~~--~~~~~--~d-~~i~~~~~~~~-----~~~~~~~~h~~~i~~v 405 (564)
|+.|.+.+..-. ..|+..... ...+....+.. |+.+. .+ ..+++.+.... .+........+....+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 788887665433 334443333 34555544433 33332 23 45778887764 2222222222333333
Q ss_pred EECCCCCEEEEEeC---CCcEEEEeCCCCee---eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC--eEEEE
Q 008467 406 KWDPTGSLLASCSD---DVTAKIWNMKQDKY---VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS--TVKLW 477 (564)
Q Consensus 406 ~~~~~~~~las~s~---dg~i~iwd~~~~~~---~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg--~i~iw 477 (564)
... .+.+++.... .+.|.-.++..... ...+..+...+.-..+...+ ..++++-..++ .|+++
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~--------~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK--------DYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET--------TEEEEEEEETTEEEEEEE
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC--------CEEEEEEEECCccEEEEE
Confidence 333 3334433322 34555556554432 22334444422222222222 13555555555 47888
Q ss_pred eCCCCeEEEEEeC-CCCCEEEEEEcCCCCEEE--EEeC--CCcEEEEeCCCCeEE
Q 008467 478 DVELGKLLYSLNG-HREPVYSLAFSPTGEYLA--SGSL--DKSMHIWSLKEGKIV 527 (564)
Q Consensus 478 d~~~~~~~~~~~~-h~~~i~~~~~spdg~~la--sgs~--dg~i~iw~~~~~~~~ 527 (564)
++..+.....+.. -.+.|..+...+++..+. ..|. -+++.-||+.++++.
T Consensus 355 ~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 355 DLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp ETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred ECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 8884444444432 233466666666665432 2333 367888899888754
No 384
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.37 E-value=0.012 Score=63.33 Aligned_cols=93 Identities=23% Similarity=0.287 Sum_probs=71.3
Q ss_pred EEEEEeCCCeEEEEeCCCCeE-EEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC----CCEEE
Q 008467 464 ILASASFDSTVKLWDVELGKL-LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN----GGIFE 538 (564)
Q Consensus 464 ~l~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~----~~i~~ 538 (564)
.++.|+.-|.|-..|+...-. ...-..-..||++++|+.||+.++.|=.+|.|.+||...+++.+.++.+ .++..
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF 180 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence 467788888888888763211 1111223478999999999999999999999999999999988887653 35778
Q ss_pred EEEccCCCEEEEEEcCCc
Q 008467 539 VCWNKEGDKIAACFANHT 556 (564)
Q Consensus 539 ~~w~~~g~~la~~~~~~~ 556 (564)
+-|..++..+.++...|.
T Consensus 181 v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 181 VGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred EEEeCCCcEEEEccCCCc
Confidence 889888887777777765
No 385
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.36 E-value=0.014 Score=38.42 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=29.7
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECCCce
Q 008467 276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL 308 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~ 308 (564)
..|.+++|+|...+||.|+.+|.|.++..+++.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence 569999999999999999999999999986653
No 386
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.33 E-value=0.015 Score=38.33 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=29.8
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 008467 492 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 526 (564)
Q Consensus 492 ~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~ 526 (564)
...|..++|+|...+||.|+.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 356999999999999999999999999998 5543
No 387
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=0.074 Score=53.17 Aligned_cols=148 Identities=18% Similarity=0.212 Sum_probs=95.0
Q ss_pred CCCE-EEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-e-EEE
Q 008467 410 TGSL-LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-K-LLY 486 (564)
Q Consensus 410 ~~~~-las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~-~~~ 486 (564)
+.++ |.++..-..++--|+..++.+.+...+.. |.-+.+.|+.........+ .| .|-.|..|.=||.+.. . .+.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~-Tl-vGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQ-TL-VGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccc-cE-EeecCCceEEecccccCcceee
Confidence 3444 34555556777789999999988887766 7777778876543322222 22 3666888999998732 2 222
Q ss_pred EEeCCC----CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE-EEEec-CCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467 487 SLNGHR----EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV-KTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVL 560 (564)
Q Consensus 487 ~~~~h~----~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~-~~~~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~ 560 (564)
...+|. ....|.+-..+ -+||+||.+|.|++||. .+..- ..+++ ..+|..+.-+.+|++|.+.+. ..+.++
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi 497 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLI 497 (644)
T ss_pred eeeccccccccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEE
Confidence 223332 22344444434 47889999999999997 44333 33444 346899999999998776644 467777
Q ss_pred Eee
Q 008467 561 DFR 563 (564)
Q Consensus 561 ~~~ 563 (564)
+.+
T Consensus 498 ~t~ 500 (644)
T KOG2395|consen 498 DTL 500 (644)
T ss_pred EEe
Confidence 654
No 388
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.19 E-value=1.2 Score=42.48 Aligned_cols=225 Identities=15% Similarity=0.209 Sum_probs=113.4
Q ss_pred CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 008467 227 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG 306 (564)
Q Consensus 227 ~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~ 306 (564)
.++.|+.|..+| +.++++..... +.. . .+...|+.+..-++-+.|++-+ |+.+++++...
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~-------~~~--i---------~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~ 65 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSK-------PTR--I---------LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDS 65 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCcc-------cee--E---------eecceEEEEEEecccCEEEEEc-CCccEEEEchh
Confidence 467899999998 88888722110 000 0 0122388888888766665544 59999998642
Q ss_pred ceeEe---------------ecCCCCCEEEEE--eCCCCCEEEEeeCCCcEEEEECCCc-----ceeEEEeecccCeEEE
Q 008467 307 DLKCT---------------LSKHKGPIFSLK--WNKKGDYLLTGSCDKTAIVWDVKTE-----EWKQQFEFHSGPTLDV 364 (564)
Q Consensus 307 ~~~~~---------------~~~h~~~V~~l~--~~~~~~~l~s~s~D~~v~iwd~~~~-----~~~~~~~~~~~~~~~~ 364 (564)
-.... .......+...+ -...+...+.....+++.+|..... ...+.+... ..+..+
T Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i 144 (275)
T PF00780_consen 66 LEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSI 144 (275)
T ss_pred hccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEE
Confidence 11110 111222343333 2234455566666779988877542 223333332 556778
Q ss_pred EcCCCceEEEEeCCCeEEEEEcCCCceeeEecCC------------CcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467 365 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGH------------QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 432 (564)
Q Consensus 365 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h------------~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~ 432 (564)
.|.++..++.. .....+.++.++.+...+... ..++..+..+ ++.+|++ .++ .-.+-|. .++
T Consensus 145 ~~~~~~i~v~~--~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~-~~~-~g~fv~~-~G~ 218 (275)
T PF00780_consen 145 AFLGNKICVGT--SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLC-YDN-IGVFVNK-NGE 218 (275)
T ss_pred EEeCCEEEEEe--CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEE-ecc-eEEEEcC-CCC
Confidence 88755444333 333556666654443332111 1233334433 3455543 222 2222232 222
Q ss_pred eee--ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC
Q 008467 433 YVH--DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 491 (564)
Q Consensus 433 ~~~--~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h 491 (564)
..+ .+.-.. ...++.+.. . +|+..+ ++.|.||++.+++++.++...
T Consensus 219 ~~r~~~i~W~~-~p~~~~~~~----------p-yli~~~-~~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 219 PSRKSTIQWSS-APQSVAYSS----------P-YLIAFS-SNSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred cCcccEEEcCC-chhEEEEEC----------C-EEEEEC-CCEEEEEECcCCcEEEEEECC
Confidence 221 111111 122233221 1 444443 466999999999998888743
No 389
>PHA02713 hypothetical protein; Provisional
Probab=96.16 E-value=0.48 Score=50.41 Aligned_cols=184 Identities=3% Similarity=0.081 Sum_probs=89.8
Q ss_pred CCCEEEEeeCC------CcEEEEECCCcceeEEEeeccc-CeEEEEcCCCceEEEEeCCC-----eEEEEEcCCCc--ee
Q 008467 327 KGDYLLTGSCD------KTAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSSTDN-----MIYVCKIGENR--PI 392 (564)
Q Consensus 327 ~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~-----~i~~~~~~~~~--~~ 392 (564)
++..++.|+.+ .++..||+.+..|...-..... .-..+.-.++..++.|+.++ .+..|+..++. .+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 44555666643 3577889888877543222111 11233334566777776543 36667765432 11
Q ss_pred eEecCCCcceEEEEECCCCCEEEEEeCCC-----------------------cEEEEeCCCCeeee--ecccccccEEEE
Q 008467 393 KTFAGHQGEVNCVKWDPTGSLLASCSDDV-----------------------TAKIWNMKQDKYVH--DLREHSKEIYTI 447 (564)
Q Consensus 393 ~~~~~h~~~i~~v~~~~~~~~las~s~dg-----------------------~i~iwd~~~~~~~~--~~~~~~~~i~~i 447 (564)
..+.........+.+ ++++.+.|+.++ ++..||..+.+... .+.........+
T Consensus 383 ~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~ 460 (557)
T PHA02713 383 PDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV 460 (557)
T ss_pred CCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE
Confidence 111111111112222 577778787653 35567765544321 111000000000
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCC------CeEEEEeCCC-C--eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCC--cE
Q 008467 448 RWSPTGSGTNNPNQQLILASASFD------STVKLWDVEL-G--KLLYSLNGHREPVYSLAFSPTGEYLASGSLDK--SM 516 (564)
Q Consensus 448 ~~~p~~~~~~~~~~~~~l~s~s~d------g~i~iwd~~~-~--~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg--~i 516 (564)
. -++. +.+.|+.+ ..|..||..+ . ..+..+.........+++ +|+..++||.|| .+
T Consensus 461 ~----------~~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~ 527 (557)
T PHA02713 461 S----------HKDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQ 527 (557)
T ss_pred E----------ECCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeeh
Confidence 1 1122 33445543 2467788876 3 233334333333333444 788889999888 67
Q ss_pred EEEeCCCCe
Q 008467 517 HIWSLKEGK 525 (564)
Q Consensus 517 ~iw~~~~~~ 525 (564)
..||..+.+
T Consensus 528 e~yd~~~~~ 536 (557)
T PHA02713 528 DTFNVYTYE 536 (557)
T ss_pred hhcCccccc
Confidence 777776554
No 390
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.13 E-value=0.65 Score=45.66 Aligned_cols=128 Identities=16% Similarity=0.166 Sum_probs=79.5
Q ss_pred CcEEEEeCCCC----eeeeec--ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEEe-CCC
Q 008467 421 VTAKIWNMKQD----KYVHDL--REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLN-GHR 492 (564)
Q Consensus 421 g~i~iwd~~~~----~~~~~~--~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~-~h~ 492 (564)
|.|.++++... ..+..+ ....++|++++-- .+ .|+.+ ..+.|.+|++...+ .+.... ...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~----------~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~ 129 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG----------RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSP 129 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT----------EEEEE-ETTEEEEEEEETTSSEEEEEEE-BS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC----------EEEEe-ecCEEEEEEccCcccchhhheecce
Confidence 88999998874 122111 2346788888754 22 23333 35899999998777 433222 122
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--CeEEEEEec--CCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 493 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKE--GKIVKTYTG--NGGIFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 493 ~~i~~~~~spdg~~lasgs~dg~i~iw~~~~--~~~~~~~~~--~~~i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
..+.++... +.+|+.|.....|.++.... .++...-.. ...++++++-++++.++++..+|.+.++..
T Consensus 130 ~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~ 201 (321)
T PF03178_consen 130 FYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRY 201 (321)
T ss_dssp SSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred EEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEE
Confidence 355665544 66999999888888885543 223322222 334788888877789999999999998864
No 391
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.08 E-value=1.9 Score=47.27 Aligned_cols=158 Identities=15% Similarity=0.263 Sum_probs=87.4
Q ss_pred eEEEEeCCCeEEEEEcCCCceeeEecCCCcceE-------------EEEECC--CCCEEEEEeC----------CCcEEE
Q 008467 371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVN-------------CVKWDP--TGSLLASCSD----------DVTAKI 425 (564)
Q Consensus 371 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~-------------~v~~~~--~~~~las~s~----------dg~i~i 425 (564)
.++.++.|+.++-.|..+++.+-.|. ..+.|. .+.-.| .+..++.|+. +|.|+-
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 56667778999989988888876653 222221 011111 1234555542 688999
Q ss_pred EeCCCCeeeeecccc---------cccEEE-----------------EEEccCCCCCCCC-CCcEEEEEEeCCCeEEEEe
Q 008467 426 WNMKQDKYVHDLREH---------SKEIYT-----------------IRWSPTGSGTNNP-NQQLILASASFDSTVKLWD 478 (564)
Q Consensus 426 wd~~~~~~~~~~~~~---------~~~i~~-----------------i~~~p~~~~~~~~-~~~~~l~s~s~dg~i~iwd 478 (564)
+|.++++.+-.+..- .+..+. +.+-|.|...... .........-..+.|.-.|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 999999887654311 011111 1111211110000 0000000012345677789
Q ss_pred CCCCeEEEEEeC-CC---------CCEEEEEEcC-CCC---EEEEEeCCCcEEEEeCCCCeEEEEE
Q 008467 479 VELGKLLYSLNG-HR---------EPVYSLAFSP-TGE---YLASGSLDKSMHIWSLKEGKIVKTY 530 (564)
Q Consensus 479 ~~~~~~~~~~~~-h~---------~~i~~~~~sp-dg~---~lasgs~dg~i~iw~~~~~~~~~~~ 530 (564)
+++|+.+..+.. |. .++ =+.+.- +|+ .++.++.+|.++++|.++|+.+...
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~-L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPS-LVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred CCCCceEEEecccCCccccccccCCce-EEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 999999887754 21 122 122322 664 7889999999999999999987654
No 392
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.04 E-value=0.0043 Score=65.24 Aligned_cols=124 Identities=12% Similarity=0.172 Sum_probs=69.7
Q ss_pred eEccCCccceEEEEECCC-CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC---
Q 008467 210 TILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--- 285 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~-~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--- 285 (564)
.+++|-.++|-.++|-.. -..++ -.-|...+|++.- ..+..+ ..+.+. .. .+...++.-+.|.|
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~--l~G~iq----~~l~v~-~~---~p~gs~~~~V~wcp~~~ 193 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDV--LQGEIQ----PQLEVT-PI---TPYGSDPQLVSWCPIAV 193 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHh--hccccc----cceEEe-ec---CcCCCCcceeeeccccc
Confidence 455677777777777431 11111 2235678898752 111111 111111 11 12233445566665
Q ss_pred CCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEE-----------eCCCCCEEEEeeCCCcEEEEEC
Q 008467 286 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLK-----------WNKKGDYLLTGSCDKTAIVWDV 345 (564)
Q Consensus 286 ~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~-----------~~~~~~~l~s~s~D~~v~iwd~ 345 (564)
+.-++..+-.+|.+++...+......+.+|...++.++ .+|||+.|+.++.||.++.|.+
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 55667777778899887766554455666766555444 4677777777777877777754
No 393
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.02 E-value=1.3 Score=41.23 Aligned_cols=179 Identities=14% Similarity=0.141 Sum_probs=108.5
Q ss_pred EEEEEeCCCCCEEEEeeCCC--cEEEEECCCcceeEEEeecccC-eEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEe
Q 008467 319 IFSLKWNKKGDYLLTGSCDK--TAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF 395 (564)
Q Consensus 319 V~~l~~~~~~~~l~s~s~D~--~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~ 395 (564)
.-++.|..+|..+-+.+.-| .|+.+|+.+++..........- .-.+...++..+...=.++..++||..+-+++.+|
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~ 126 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTF 126 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEE
Confidence 34677877787777777766 6999999999887665443221 11223334555555556777888999888888777
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc--c---ccEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008467 396 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH--S---KEIYTIRWSPTGSGTNNPNQQLILASASF 470 (564)
Q Consensus 396 ~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~--~---~~i~~i~~~p~~~~~~~~~~~~~l~s~s~ 470 (564)
.- .++=..++ .|++.|+.......+.++|..+.+....+... . ..+.-+.|. +| .+.|-.=.
T Consensus 127 ~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G---------~IyANVW~ 193 (264)
T PF05096_consen 127 PY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG---------KIYANVWQ 193 (264)
T ss_dssp E--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT---------EEEEEETT
T ss_pred ec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC---------EEEEEeCC
Confidence 52 34555666 35666666655678999998876665554322 1 233445554 22 25555556
Q ss_pred CCeEEEEeCCCCeEEEEEeC------------C---CCCEEEEEEcCCCCE-EEEE
Q 008467 471 DSTVKLWDVELGKLLYSLNG------------H---REPVYSLAFSPTGEY-LASG 510 (564)
Q Consensus 471 dg~i~iwd~~~~~~~~~~~~------------h---~~~i~~~~~spdg~~-lasg 510 (564)
...|...|..+|+++..+.- + ..-.+.|||.|.... ++||
T Consensus 194 td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 194 TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 67788889999998876531 1 234788999887654 4555
No 394
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.94 E-value=0.45 Score=47.73 Aligned_cols=143 Identities=18% Similarity=0.179 Sum_probs=75.1
Q ss_pred ceEEEEECCCCCEEEEEe-----------CCC-cEEEEeCCC--Cee--eeecccccccEEEEEEccCCCCCCCCCCcEE
Q 008467 401 EVNCVKWDPTGSLLASCS-----------DDV-TAKIWNMKQ--DKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLI 464 (564)
Q Consensus 401 ~i~~v~~~~~~~~las~s-----------~dg-~i~iwd~~~--~~~--~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~ 464 (564)
....++|.++|+++++.. ..+ .|.+++-.. ++. ...+.........+++.+++ +
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G----------l 84 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG----------V 84 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC----------E
Confidence 345788999998877653 223 666665432 211 12222222233556666554 2
Q ss_pred EEEEeCCCeEEEEeCCC-------CeEEEE-EeC----CCCCEEEEEEcCCCCEEEEEeCC-------------------
Q 008467 465 LASASFDSTVKLWDVEL-------GKLLYS-LNG----HREPVYSLAFSPTGEYLASGSLD------------------- 513 (564)
Q Consensus 465 l~s~s~dg~i~iwd~~~-------~~~~~~-~~~----h~~~i~~~~~spdg~~lasgs~d------------------- 513 (564)
++ ++.....++.|... .+.+.. +.. +......++|.|||.+.++-+..
T Consensus 85 yV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~ 163 (367)
T TIGR02604 85 YV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLG 163 (367)
T ss_pred EE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccC
Confidence 33 33333333445431 122222 222 12346789999999877754421
Q ss_pred CcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcC
Q 008467 514 KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN 554 (564)
Q Consensus 514 g~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~ 554 (564)
|.|.-++..++++...-.+......++|+++|+.+++-..+
T Consensus 164 g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 164 GGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 44555555554433222233346789999999987765433
No 395
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.86 E-value=0.42 Score=42.96 Aligned_cols=138 Identities=12% Similarity=0.211 Sum_probs=86.2
Q ss_pred EEEECCCCCEEEEEeCC---------CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEE--CCC
Q 008467 280 TLDWNGEGTLLATGSYD---------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWD--VKT 347 (564)
Q Consensus 280 ~l~~s~~g~~l~sg~~d---------g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd--~~~ 347 (564)
.-..+|+|++++-.-.| |.++.|-..++....... -+--.+++|+.+.+.+. +-+.+-+|.-|| ..+
T Consensus 113 DgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~-v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~t 191 (310)
T KOG4499|consen 113 DGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNC-VGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPT 191 (310)
T ss_pred cCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehh-ccCCccccccccCcEEEEEccCceEEeeeecCCCc
Confidence 33457899885433222 456666555444333221 12225678887766554 455666777777 555
Q ss_pred cceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEe
Q 008467 348 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 427 (564)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd 427 (564)
|.... .-.+++++..+|...+. -..++.+.+|++.+++-.-++|...|
T Consensus 192 G~~sn---------------------------r~~i~dlrk~~~~e~~~-----PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 192 GDLSN---------------------------RKVIFDLRKSQPFESLE-----PDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred ccccC---------------------------cceeEEeccCCCcCCCC-----CCcceEccCCcEEEEEecCcEEEEEC
Confidence 54221 11234444433322211 12344566899999999999999999
Q ss_pred CCCCeeeeecccccccEEEEEEc
Q 008467 428 MKQDKYVHDLREHSKEIYTIRWS 450 (564)
Q Consensus 428 ~~~~~~~~~~~~~~~~i~~i~~~ 450 (564)
..+++.+.+++-....|++.+|-
T Consensus 240 p~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEec
Confidence 99999999999889999999985
No 396
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.58 E-value=0.52 Score=49.75 Aligned_cols=92 Identities=20% Similarity=0.400 Sum_probs=64.5
Q ss_pred EeCCCeEEEEeCCCCeEEEEEe-CCCCCEEEEEEc--CCCCEEEEEeCCCcEEEEeCCC---------CeEEEEEe----
Q 008467 468 ASFDSTVKLWDVELGKLLYSLN-GHREPVYSLAFS--PTGEYLASGSLDKSMHIWSLKE---------GKIVKTYT---- 531 (564)
Q Consensus 468 ~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~~~~s--pdg~~lasgs~dg~i~iw~~~~---------~~~~~~~~---- 531 (564)
-+...++.|||.+.+..-++-. ....+|.++.|. |||+.+.+.|....|.+|.-.. ...++.+.
T Consensus 47 ~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~ 126 (631)
T PF12234_consen 47 DSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSH 126 (631)
T ss_pred ECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecC
Confidence 3344579999999887654432 346789999875 7899999999999999996531 12333332
Q ss_pred cCCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 532 GNGGIFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 532 ~~~~i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
...+|.+.+|-++|..++++ +| .+.|+|
T Consensus 127 T~h~Igds~Wl~~G~LvV~s-GN-qlfv~d 154 (631)
T PF12234_consen 127 TPHPIGDSIWLKDGTLVVGS-GN-QLFVFD 154 (631)
T ss_pred CCCCccceeEecCCeEEEEe-CC-EEEEEC
Confidence 13568899999999777665 33 577765
No 397
>PHA02713 hypothetical protein; Provisional
Probab=95.33 E-value=1.5 Score=46.72 Aligned_cols=93 Identities=13% Similarity=0.184 Sum_probs=46.7
Q ss_pred cEEEEECCCcceeEEEeecccC-eEEEEcCCCceEEEEeCC------CeEEEEEcCCCce--eeEecCCCcceEEEEECC
Q 008467 339 TAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTD------NMIYVCKIGENRP--IKTFAGHQGEVNCVKWDP 409 (564)
Q Consensus 339 ~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d------~~i~~~~~~~~~~--~~~~~~h~~~i~~v~~~~ 409 (564)
.+..||+.+++|...-...... ...+...++..++.|+.+ ..++.++...+.- +..+.........+.+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~-- 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI-- 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--
Confidence 5677888877765432211111 122333456667776643 2356667655421 1111111111222222
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCee
Q 008467 410 TGSLLASCSDDV-----TAKIWNMKQDKY 433 (564)
Q Consensus 410 ~~~~las~s~dg-----~i~iwd~~~~~~ 433 (564)
+|++.+.|+.++ ++..||..+...
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 578888888764 377888776543
No 398
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.05 E-value=0.077 Score=47.39 Aligned_cols=102 Identities=17% Similarity=0.146 Sum_probs=64.2
Q ss_pred CCEEEEeeCCCcEEEEECCCccee-EEEeecccCeEEEEcC--CCceEEEEeCCCeEEEEEcCCCceeeEecCCC-cceE
Q 008467 328 GDYLLTGSCDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVN 403 (564)
Q Consensus 328 ~~~l~s~s~D~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~i~ 403 (564)
+.-++.|+.+|.|.+|+....... ..+.....++..+-.. ......++..++.|+.|.+...+.+.....|+ .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 356889999999999987621111 1111111222222222 22355677889999999999888777766776 4555
Q ss_pred EEEECCCCCEEEEE--eCCCcEEEEeCC
Q 008467 404 CVKWDPTGSLLASC--SDDVTAKIWNMK 429 (564)
Q Consensus 404 ~v~~~~~~~~las~--s~dg~i~iwd~~ 429 (564)
....+..++++++. |.|..++.|++.
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchh
Confidence 55555566667766 777777777764
No 399
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.05 E-value=0.98 Score=46.31 Aligned_cols=148 Identities=18% Similarity=0.348 Sum_probs=88.0
Q ss_pred cceEEEEECCCCCEEEEEe---CCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEE
Q 008467 400 GEVNCVKWDPTGSLLASCS---DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL 476 (564)
Q Consensus 400 ~~i~~v~~~~~~~~las~s---~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~i 476 (564)
.++..++|. ||+.++-.. .+|.+++=|. +.+. .-..|+.+.|.|.+.... . .|+.......|.|
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viG----qFEhV~GlsW~P~~~~~~----p-aLLAVQHkkhVtV 86 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIG----QFEHVHGLSWAPPCTADT----P-ALLAVQHKKHVTV 86 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEee----ccceeeeeeecCcccCCC----C-ceEEEeccceEEE
Confidence 467788897 676544321 2444443221 1122 224578999999764321 1 3445567889999
Q ss_pred EeCC-----CCeEEEEEeCC---CCCE--EEEEEcCCCCEEEEEeCCCcEEEEeCCC--CeEEEEEecCCCEEEEEEccC
Q 008467 477 WDVE-----LGKLLYSLNGH---REPV--YSLAFSPTGEYLASGSLDKSMHIWSLKE--GKIVKTYTGNGGIFEVCWNKE 544 (564)
Q Consensus 477 wd~~-----~~~~~~~~~~h---~~~i--~~~~~spdg~~lasgs~dg~i~iw~~~~--~~~~~~~~~~~~i~~~~w~~~ 544 (564)
|-+. .++.+.+-..+ .-|| ....|+|....|+.-.....-.+++++. ..+.....+.+-|.+.||.+|
T Consensus 87 WqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~D 166 (671)
T PF15390_consen 87 WQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKD 166 (671)
T ss_pred EEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCc
Confidence 9875 23333332221 1122 3467999999988765554434566642 233344556677999999999
Q ss_pred CCEEEEEEcCCcE--EEEE
Q 008467 545 GDKIAACFANHTV--CVLD 561 (564)
Q Consensus 545 g~~la~~~~~~~v--~v~~ 561 (564)
|++|+++-++ .+ .|||
T Consensus 167 G~RLVVAvGS-sLHSyiWd 184 (671)
T PF15390_consen 167 GQRLVVAVGS-SLHSYIWD 184 (671)
T ss_pred CCEEEEEeCC-eEEEEEec
Confidence 9999988655 44 4554
No 400
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.00 E-value=1.4 Score=45.16 Aligned_cols=114 Identities=14% Similarity=0.268 Sum_probs=62.1
Q ss_pred cceEEEEECCCC----CEEEEEeCCCcEEEEeCCC-----Ceeeeeccccc-c--cE--EEEEEccCCCCCCCCCCcEEE
Q 008467 400 GEVNCVKWDPTG----SLLASCSDDVTAKIWNMKQ-----DKYVHDLREHS-K--EI--YTIRWSPTGSGTNNPNQQLIL 465 (564)
Q Consensus 400 ~~i~~v~~~~~~----~~las~s~dg~i~iwd~~~-----~~~~~~~~~~~-~--~i--~~i~~~p~~~~~~~~~~~~~l 465 (564)
..|..+.|.|-+ ..|........|.||.+.. .+.+..-..+- . ++ ....|+|... +|
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~---------iL 127 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA---------IL 127 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc---------eE
Confidence 357889999853 3444555667899998742 22221110000 0 00 1234555432 34
Q ss_pred EEEeCCCeEEEEeCC--CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCC
Q 008467 466 ASASFDSTVKLWDVE--LGKLLYSLNGHREPVYSLAFSPTGEYLASGSL-DKSMHIWSLKE 523 (564)
Q Consensus 466 ~s~s~dg~i~iwd~~--~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~-dg~i~iw~~~~ 523 (564)
+.-.....--+++++ +.+....++ ..+-|.|.+|.+||+.|+.+-. .=.-+|||-..
T Consensus 128 ~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 128 TVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 333333333345554 334444554 3467999999999998876533 33567888543
No 401
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.82 E-value=3 Score=37.75 Aligned_cols=137 Identities=16% Similarity=0.217 Sum_probs=78.8
Q ss_pred CcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccccccc--------EEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008467 399 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE--------IYTIRWSPTGSGTNNPNQQLILASASF 470 (564)
Q Consensus 399 ~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~--------i~~i~~~p~~~~~~~~~~~~~l~s~s~ 470 (564)
....+.-..+|+|++++-.-.|-.- ++....+.....+.+|.-. -..++|+.+ .+.+...-+.
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d--------~K~fY~iDsl 178 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSD--------AKKFYYIDSL 178 (310)
T ss_pred hcccccCccCCCCceeeeeeccccc-cccccccEEEEeccCCCceeeehhccCCcccccccc--------CcEEEEEccC
Confidence 3456677789999985422222111 1222222222223333311 133455432 3345566777
Q ss_pred CCeEEEEe--CCCC-----eEEEEEeCC---CC-CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCCEEE
Q 008467 471 DSTVKLWD--VELG-----KLLYSLNGH---RE-PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFE 538 (564)
Q Consensus 471 dg~i~iwd--~~~~-----~~~~~~~~h---~~-~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~-~~~i~~ 538 (564)
+-+|.-|| ..+| +.++.++.. .. ....++..-+|.+.++.-..++|...|..+|+++.++.- ...|++
T Consensus 179 n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qits 258 (310)
T KOG4499|consen 179 NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITS 258 (310)
T ss_pred ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEE
Confidence 88888888 4444 344444321 11 113345566788888877788999999999999988764 345888
Q ss_pred EEEccC
Q 008467 539 VCWNKE 544 (564)
Q Consensus 539 ~~w~~~ 544 (564)
.||--.
T Consensus 259 ccFgGk 264 (310)
T KOG4499|consen 259 CCFGGK 264 (310)
T ss_pred EEecCC
Confidence 888644
No 402
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.81 E-value=1.1 Score=41.68 Aligned_cols=129 Identities=19% Similarity=0.189 Sum_probs=75.8
Q ss_pred EEEECCCCCE-EEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCe-EEEEeCCC
Q 008467 404 CVKWDPTGSL-LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST-VKLWDVEL 481 (564)
Q Consensus 404 ~v~~~~~~~~-las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~ 481 (564)
+....+||++ +++.+++|.+.-= . .-......+.++|... ..++-+-.-|+ ..++|...
T Consensus 40 saf~~~dgs~g~a~~~eaGk~v~~----------~-~lpaR~Hgi~~~p~~~--------ravafARrPGtf~~vfD~~~ 100 (366)
T COG3490 40 SAFDARDGSFGAATLSEAGKIVFA----------T-ALPARGHGIAFHPALP--------RAVAFARRPGTFAMVFDPNG 100 (366)
T ss_pred eeeeccCCceeEEEEccCCceeee----------e-ecccccCCeecCCCCc--------ceEEEEecCCceEEEECCCC
Confidence 3444667776 5666777765321 0 0112223455555432 12333444443 45678776
Q ss_pred CeEEEEEeCCCCC--EEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCC-eEEEEEecCC-CEEEEEEccCCCEEEEE
Q 008467 482 GKLLYSLNGHREP--VYSLAFSPTGEYLASGSLD-----KSMHIWSLKEG-KIVKTYTGNG-GIFEVCWNKEGDKIAAC 551 (564)
Q Consensus 482 ~~~~~~~~~h~~~--i~~~~~spdg~~lasgs~d-----g~i~iw~~~~~-~~~~~~~~~~-~i~~~~w~~~g~~la~~ 551 (564)
.+.+.++...... --.-.|||||.+|...-.| |.|-|||.+.+ ..+..|...+ +.-++.|.+||..|+.+
T Consensus 101 ~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvva 179 (366)
T COG3490 101 AQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVA 179 (366)
T ss_pred CcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEe
Confidence 6655444322111 1123699999999765433 78999998754 3456666544 56789999999999987
No 403
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.75 E-value=0.015 Score=61.36 Aligned_cols=113 Identities=18% Similarity=0.262 Sum_probs=64.7
Q ss_pred ECCCCCEEEEEeCCCcEEEEeCC-----CCeeeeecccccc-cEEEEEEccCCCC-CCCCCCcEEEEEEeCCCeEEEEeC
Q 008467 407 WDPTGSLLASCSDDVTAKIWNMK-----QDKYVHDLREHSK-EIYTIRWSPTGSG-TNNPNQQLILASASFDSTVKLWDV 479 (564)
Q Consensus 407 ~~~~~~~las~s~dg~i~iwd~~-----~~~~~~~~~~~~~-~i~~i~~~p~~~~-~~~~~~~~~l~s~s~dg~i~iwd~ 479 (564)
.+|||+.||+++.||.++.|.+. ..++.+..+.|.+ +-.|..+...... ...+.-.+.+-+...+..+++|..
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 79999999999999999988753 3345666677763 2222222221111 111122234444455677999987
Q ss_pred CCCeEEEEEeCCCCCEEEEEEcCCCCE------------EEEEeCCCcEEEEeCC
Q 008467 480 ELGKLLYSLNGHREPVYSLAFSPTGEY------------LASGSLDKSMHIWSLK 522 (564)
Q Consensus 480 ~~~~~~~~~~~h~~~i~~~~~spdg~~------------lasgs~dg~i~iw~~~ 522 (564)
...+|+..+ .-..|..+. -+||.. +++-+.++.|++|.-+
T Consensus 323 a~w~Cll~~--~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 323 APWQCLLDK--LIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNR 374 (1283)
T ss_pred cchhhhhhh--cccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence 766665222 123344444 334431 3445678888888643
No 404
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.56 E-value=0.49 Score=51.95 Aligned_cols=139 Identities=12% Similarity=0.086 Sum_probs=84.4
Q ss_pred eEEEEECCCCCEEEE--EeCCCcEEEEeCCCCeee-----eecccc------cccEEEEEEccCCCCCCCCCCcEEEEEE
Q 008467 402 VNCVKWDPTGSLLAS--CSDDVTAKIWNMKQDKYV-----HDLREH------SKEIYTIRWSPTGSGTNNPNQQLILASA 468 (564)
Q Consensus 402 i~~v~~~~~~~~las--~s~dg~i~iwd~~~~~~~-----~~~~~~------~~~i~~i~~~p~~~~~~~~~~~~~l~s~ 468 (564)
|..+...+|++..+. .+++-.|..||+++-..- .-|..| .....++.|.|.-. ...+.+
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp--------~n~av~ 174 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP--------LNSAVD 174 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc--------chhhhh
Confidence 444555667665433 344446788887642211 111111 12234567776542 346677
Q ss_pred eCCCeEEEEeCCCCeE-EEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-----CCCEEEEEEc
Q 008467 469 SFDSTVKLWDVELGKL-LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-----NGGIFEVCWN 542 (564)
Q Consensus 469 s~dg~i~iwd~~~~~~-~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~-----~~~i~~~~w~ 542 (564)
..|+.|++..+..... +.++ ......++++|+|.|+-++.|-..|++.-|... +++...... +..|.+|+|-
T Consensus 175 l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl 252 (1405)
T KOG3630|consen 175 LSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWL 252 (1405)
T ss_pred ccccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEe
Confidence 8899998887653222 2222 234568999999999999999999999888653 333333322 4578999998
Q ss_pred cCCCEEEE
Q 008467 543 KEGDKIAA 550 (564)
Q Consensus 543 ~~g~~la~ 550 (564)
..-.+|++
T Consensus 253 ~t~eflvv 260 (1405)
T KOG3630|consen 253 STQEFLVV 260 (1405)
T ss_pred cceeEEEE
Confidence 77666654
No 405
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.48 E-value=4.4 Score=38.18 Aligned_cols=139 Identities=16% Similarity=0.248 Sum_probs=79.9
Q ss_pred CCeEEEEECCCCCEEEEEe---CCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEE-CCCccee
Q 008467 276 KDVTTLDWNGEGTLLATGS---YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD-VKTEEWK 351 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~---~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd-~~~~~~~ 351 (564)
..+.+.++|++|..++... ....++++...+.....+.+ ..+..-.|++++........+...+++. ...+...
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 3688999999999877655 33466666655554444433 2667778999876666655555556553 2222111
Q ss_pred EEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe---CCCcEEEEeC
Q 008467 352 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS---DDVTAKIWNM 428 (564)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s---~dg~i~iwd~ 428 (564)
. ..++| ..-.+.|..+++||||..+|.-. .++.|.+=-+
T Consensus 102 ~---------~~v~~-----------------------------~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 102 P---------VEVDW-----------------------------PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred e---------EEecc-----------------------------cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 0 00000 01111789999999999877655 2455555432
Q ss_pred C---CC--e----eeeecccccccEEEEEEccCCC
Q 008467 429 K---QD--K----YVHDLREHSKEIYTIRWSPTGS 454 (564)
Q Consensus 429 ~---~~--~----~~~~~~~~~~~i~~i~~~p~~~ 454 (564)
. .+ . .+.........+..+.|.+++.
T Consensus 144 ~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 144 VRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred EeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence 1 12 1 1111122345788999998764
No 406
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.44 E-value=3 Score=44.45 Aligned_cols=185 Identities=15% Similarity=0.183 Sum_probs=94.0
Q ss_pred CCEEEEeeCC------CcEEEEECCCcceeEEEeeccc-CeEEEEcCCCceEEEEeCC-C-----eEEEEEcCCCc--ee
Q 008467 328 GDYLLTGSCD------KTAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSSTD-N-----MIYVCKIGENR--PI 392 (564)
Q Consensus 328 ~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d-~-----~i~~~~~~~~~--~~ 392 (564)
+..++.|+.+ .++..+|+.++.|......... ....+...++..+++|+.+ + .+..||...++ .+
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 3444555555 4688899988877664433222 2344555677888888888 3 35566655443 11
Q ss_pred eEecCCCcceEEEEECCCCCEEEEEeCCCc-----EEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEE
Q 008467 393 KTFAGHQGEVNCVKWDPTGSLLASCSDDVT-----AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS 467 (564)
Q Consensus 393 ~~~~~h~~~i~~v~~~~~~~~las~s~dg~-----i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s 467 (564)
..+.......-... -+|.+.|.|+.||. +..||..+.+.-..-. .........-..- ++ .+.+.
T Consensus 365 a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~-------~g-~iYi~ 433 (571)
T KOG4441|consen 365 APMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVL-------GG-KLYII 433 (571)
T ss_pred CCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEE-------CC-EEEEE
Confidence 11111111111121 26888899999874 6678876654321100 1111111111111 11 24455
Q ss_pred EeCCC------eEEEEeCCCCeE--EEEEeCCCCCEEEEEEcCCCCEEEEEeCCCc-----EEEEeCCCCe
Q 008467 468 ASFDS------TVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLASGSLDKS-----MHIWSLKEGK 525 (564)
Q Consensus 468 ~s~dg------~i~iwd~~~~~~--~~~~~~h~~~i~~~~~spdg~~lasgs~dg~-----i~iw~~~~~~ 525 (564)
|+.++ ++..||..+++- +..+..-+....... -++...|.||.|+. |..||..+.+
T Consensus 434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV--LNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred cCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE--ECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 66443 466777765532 222222122222222 26778888888763 6778877654
No 407
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.42 E-value=4.5 Score=38.05 Aligned_cols=187 Identities=14% Similarity=0.223 Sum_probs=111.4
Q ss_pred cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecc-cCeEEEEcCCCceEEEEe-CCCeEEEEEcCCCc
Q 008467 313 SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-GPTLDVDWRNNVSFATSS-TDNMIYVCKIGENR 390 (564)
Q Consensus 313 ~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~ 390 (564)
.+-+..|.++.|+|+.+.|++......-.+|=-..|.++..+.... ...-.+.|..+..|+.+. .++.++++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 3445559999999999999988888888888667788887765433 123346677777776554 57777777766542
Q ss_pred ee----------eEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee---eeeccccc-------ccEEEEEEc
Q 008467 391 PI----------KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY---VHDLREHS-------KEIYTIRWS 450 (564)
Q Consensus 391 ~~----------~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~---~~~~~~~~-------~~i~~i~~~ 450 (564)
.+ ......+.....++|+|....|..+-+-.-++||....... ++....+. ..+.++.|.
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 11 11112244577899999999888888888888877653321 11111111 123334444
Q ss_pred cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC---------CCEEEEEEcCCCCEEE
Q 008467 451 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR---------EPVYSLAFSPTGEYLA 508 (564)
Q Consensus 451 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~---------~~i~~~~~spdg~~la 508 (564)
+. ...+|+-+..++.+.-.|.. |..+..+.-+. .....|+..++|...+
T Consensus 242 ~~--------~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYI 299 (316)
T COG3204 242 AI--------TNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYI 299 (316)
T ss_pred CC--------CCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEE
Confidence 32 22356666777777777765 44433332111 1134566666665443
No 408
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.17 E-value=5.7 Score=38.30 Aligned_cols=105 Identities=19% Similarity=0.208 Sum_probs=54.5
Q ss_pred cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008467 439 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMH 517 (564)
Q Consensus 439 ~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~ 517 (564)
.-.+.+..+.-+++|. ++++++.-....-||.-.. -..+. +.-...|.+|.|+|++...+++ ..|.|+
T Consensus 142 ~~~gs~~~~~r~~dG~---------~vavs~~G~~~~s~~~G~~~w~~~~-r~~~~riq~~gf~~~~~lw~~~-~Gg~~~ 210 (302)
T PF14870_consen 142 ETSGSINDITRSSDGR---------YVAVSSRGNFYSSWDPGQTTWQPHN-RNSSRRIQSMGFSPDGNLWMLA-RGGQIQ 210 (302)
T ss_dssp S----EEEEEE-TTS----------EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEE
T ss_pred CCcceeEeEEECCCCc---------EEEEECcccEEEEecCCCccceEEc-cCccceehhceecCCCCEEEEe-CCcEEE
Confidence 3446677777777775 5665554444556775422 12222 2245689999999998876654 778787
Q ss_pred EEeCCCCeEEEEEe--------cCCCEEEEEEccCCCEEEEEEcCCcE
Q 008467 518 IWSLKEGKIVKTYT--------GNGGIFEVCWNKEGDKIAACFANHTV 557 (564)
Q Consensus 518 iw~~~~~~~~~~~~--------~~~~i~~~~w~~~g~~la~~~~~~~v 557 (564)
+=+... -..++. ..-++.+++|.+++...|+|. +|.+
T Consensus 211 ~s~~~~--~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l 255 (302)
T PF14870_consen 211 FSDDPD--DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL 255 (302)
T ss_dssp EEE-TT--EEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E
T ss_pred EccCCC--CccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE
Confidence 766211 122221 122489999999988888774 4444
No 409
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.17 E-value=6.4 Score=38.81 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=39.6
Q ss_pred CCEEEEEEcC-------CCCEEEEEeCCCcEEEEeCCCCeEEEE---Ee-cCC-CEEEEEEccCCCEEEEEEcCCcE
Q 008467 493 EPVYSLAFSP-------TGEYLASGSLDKSMHIWSLKEGKIVKT---YT-GNG-GIFEVCWNKEGDKIAACFANHTV 557 (564)
Q Consensus 493 ~~i~~~~~sp-------dg~~lasgs~dg~i~iw~~~~~~~~~~---~~-~~~-~i~~~~w~~~g~~la~~~~~~~v 557 (564)
..+..+.|-. .|.++++.-..+.|....+..+..+.. +- ... .+.+++..|||.+.++...+|.|
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKI 329 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeE
Confidence 4456666653 344566555566787777764432222 11 222 68999999999998888888876
No 410
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.82 E-value=1.4 Score=47.94 Aligned_cols=33 Identities=24% Similarity=0.492 Sum_probs=27.7
Q ss_pred CCcceEEEEECCC---CCEEEEEeCCCcEEEEeCCC
Q 008467 398 HQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQ 430 (564)
Q Consensus 398 h~~~i~~v~~~~~---~~~las~s~dg~i~iwd~~~ 430 (564)
+...|..+.|+|. +..|+.-..|+++|+||+..
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 3457889999997 47888999999999999864
No 411
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.65 E-value=2.7 Score=39.51 Aligned_cols=115 Identities=9% Similarity=0.271 Sum_probs=78.3
Q ss_pred cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008467 439 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLASGSLDKSM 516 (564)
Q Consensus 439 ~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~i~~~~~spdg~~lasgs~dg~i 516 (564)
+-...+.++.|+|+.. .|.+......--||=...|..+.++. +-.+ ...|.|.-+|+|.++--.++.+
T Consensus 83 g~~~nvS~LTynp~~r---------tLFav~n~p~~iVElt~~GdlirtiPL~g~~D-pE~Ieyig~n~fvi~dER~~~l 152 (316)
T COG3204 83 GETANVSSLTYNPDTR---------TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD-PETIEYIGGNQFVIVDERDRAL 152 (316)
T ss_pred cccccccceeeCCCcc---------eEEEecCCCceEEEEecCCceEEEecccccCC-hhHeEEecCCEEEEEehhcceE
Confidence 3344588999999765 34444444555556555688887763 3222 3668888889998888889999
Q ss_pred EEEeCCCCeEEEE----------Eec-CCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 517 HIWSLKEGKIVKT----------YTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 517 ~iw~~~~~~~~~~----------~~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
.++.+.....+.. +.. +.+--.++|+|....|.++-...-+.||-+.
T Consensus 153 ~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 153 YLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred EEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 9998876532211 112 4566789999999998888777677777654
No 412
>PHA03098 kelch-like protein; Provisional
Probab=93.63 E-value=2.6 Score=44.75 Aligned_cols=93 Identities=16% Similarity=0.164 Sum_probs=43.5
Q ss_pred cEEEEECCCcceeEEEeeccc-CeEEEEcCCCceEEEEeCCC-----eEEEEEcCCCce--eeEecCCCcceEEEEECCC
Q 008467 339 TAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSSTDN-----MIYVCKIGENRP--IKTFAGHQGEVNCVKWDPT 410 (564)
Q Consensus 339 ~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~-----~i~~~~~~~~~~--~~~~~~h~~~i~~v~~~~~ 410 (564)
.+..||+.+.+|...-..... ....+...++..++.|+.++ .+..|+..+++= +..+.........+. -+
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~--~~ 389 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN--VN 389 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE--EC
Confidence 467788888777543221111 11222334556666666542 355566544321 111110111111122 25
Q ss_pred CCEEEEEeCC------CcEEEEeCCCCee
Q 008467 411 GSLLASCSDD------VTAKIWNMKQDKY 433 (564)
Q Consensus 411 ~~~las~s~d------g~i~iwd~~~~~~ 433 (564)
+++++.|+.+ ..+..||..+.+.
T Consensus 390 ~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 390 NLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred CEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 6777777732 3577888776543
No 413
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.59 E-value=1.7 Score=43.19 Aligned_cols=133 Identities=16% Similarity=0.223 Sum_probs=84.1
Q ss_pred CCCCEEEEEeCCCeEEEEECCC---ceeEee-cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeE----EEee
Q 008467 285 GEGTLLATGSYDGQARIWSTNG---DLKCTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ----QFEF 356 (564)
Q Consensus 285 ~~g~~l~sg~~dg~i~vw~~~~---~~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~----~~~~ 356 (564)
.|.+..+.+...|.+.=|-+.| .....+ ....++|.+++|++|.+.|+.--.|++|.+.+....+... ....
T Consensus 31 DDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~ 110 (657)
T KOG2377|consen 31 DDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKT 110 (657)
T ss_pred ccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhcc
Confidence 3444444555556666665433 222222 2346799999999999999999999999999874333222 2223
Q ss_pred cccCeEEEEcCCCceEEEEeCCCeEEEEEc-CCCceeeEecCCCcceEEEEECCCCCEEEEEe
Q 008467 357 HSGPTLDVDWRNNVSFATSSTDNMIYVCKI-GENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 418 (564)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~-~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s 418 (564)
....+..+.|..+..++.-...|. -+|.+ ...+.++....|.-.|+=-.|.++.+.+.-|+
T Consensus 111 k~~~IlGF~W~~s~e~A~i~~~G~-e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 111 KNANILGFCWTSSTEIAFITDQGI-EFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred CcceeEEEEEecCeeEEEEecCCe-EEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 344588999988877776665554 22222 22334455566777788888888877654443
No 414
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.40 E-value=9.5 Score=38.28 Aligned_cols=195 Identities=12% Similarity=0.157 Sum_probs=90.7
Q ss_pred CCCEEEEEE-CCCcEEEEeCCCCCCCCCCCCCCceEEEEEeecccc-cc--CCCCeEEEEECCCCCEEEEEeCC------
Q 008467 227 AGSLLASGS-GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT-NE--KSKDVTTLDWNGEGTLLATGSYD------ 296 (564)
Q Consensus 227 ~~~~lasgs-~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~V~~l~~s~~g~~l~sg~~d------ 296 (564)
+.++|...+ ..+.|.|.|+.+.... | ...+...... .. .-..-.++.--|+|++++|+-.|
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~------P---~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~ 156 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRK------P---RLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGP 156 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS----------EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCC------C---ceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCC
Confidence 346777766 6788999998643211 1 1111111100 00 00011222334688888886432
Q ss_pred CeEEEEECCC-ceeEeecC---CCCCEEEEEeCCCCCEEEEeeC--------------------CCcEEEEECCCcceeE
Q 008467 297 GQARIWSTNG-DLKCTLSK---HKGPIFSLKWNKKGDYLLTGSC--------------------DKTAIVWDVKTEEWKQ 352 (564)
Q Consensus 297 g~i~vw~~~~-~~~~~~~~---h~~~V~~l~~~~~~~~l~s~s~--------------------D~~v~iwd~~~~~~~~ 352 (564)
|-+.+.|-++ .++..... ...--+.+-|.|..+.++|... ..++.+||+.+.+.++
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q 236 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQ 236 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEee
Confidence 3455666542 22222221 1223456777888888888663 3589999999999999
Q ss_pred EEeecc--cCeEEEEcC----CCceEEEEeCCCeEEEEEcCC-Cc----eeeEec-----C------------CCcceEE
Q 008467 353 QFEFHS--GPTLDVDWR----NNVSFATSSTDNMIYVCKIGE-NR----PIKTFA-----G------------HQGEVNC 404 (564)
Q Consensus 353 ~~~~~~--~~~~~~~~~----~~~~~~~~~~d~~i~~~~~~~-~~----~~~~~~-----~------------h~~~i~~ 404 (564)
.+.... ...+.+.|. ...-|+.+.....|+.|--.. +. .+..+. + -..-|+.
T Consensus 237 ~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitD 316 (461)
T PF05694_consen 237 TIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITD 316 (461)
T ss_dssp EEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------
T ss_pred EEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEe
Confidence 988764 345677764 235678777777777765422 11 111111 1 1245788
Q ss_pred EEECCCCCEEEEEe-CCCcEEEEeCCC
Q 008467 405 VKWDPTGSLLASCS-DDVTAKIWNMKQ 430 (564)
Q Consensus 405 v~~~~~~~~las~s-~dg~i~iwd~~~ 430 (564)
|..|.|.++|..+. .+|.||.||+..
T Consensus 317 I~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 317 ILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred EEEccCCCEEEEEcccCCcEEEEecCC
Confidence 99999999886555 599999999864
No 415
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.26 E-value=2.9 Score=44.40 Aligned_cols=109 Identities=14% Similarity=0.255 Sum_probs=69.2
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecc-cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC--
Q 008467 404 CVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-- 480 (564)
Q Consensus 404 ~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-- 480 (564)
.+.-+.-++..+.-+...++.|||.+.+....+-. ...+.|..+.|...+. .+.+| +.+....|.++.-.
T Consensus 34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d------~qsiL-aVGf~~~v~l~~Q~R~ 106 (631)
T PF12234_consen 34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPD------GQSIL-AVGFPHHVLLYTQLRY 106 (631)
T ss_pred eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCC------CCEEE-EEEcCcEEEEEEccch
Confidence 34444445554444455679999998877543222 4567899999986543 33445 55678888888531
Q ss_pred ---CC----eEEEE--EeCCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467 481 ---LG----KLLYS--LNGHR-EPVYSLAFSPTGEYLASGSLDKSMHIWSL 521 (564)
Q Consensus 481 ---~~----~~~~~--~~~h~-~~i~~~~~spdg~~lasgs~dg~i~iw~~ 521 (564)
+. ..+.. +..|+ .+|.+..|.++|.+++.+| +.+.|++-
T Consensus 107 dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 107 DYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred hhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 11 12222 23344 5899999999999887654 45888874
No 416
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.24 E-value=16 Score=40.37 Aligned_cols=150 Identities=14% Similarity=0.193 Sum_probs=85.2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeeecccccccEE-EEEE--ccCCC--CCCCC--CCcEEEEEEeC----------CCe
Q 008467 411 GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY-TIRW--SPTGS--GTNNP--NQQLILASASF----------DST 473 (564)
Q Consensus 411 ~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~-~i~~--~p~~~--~~~~~--~~~~~l~s~s~----------dg~ 473 (564)
+..|+.++.|+.+.-.|.++++.+..+... +.+. .... .+.+. ....| .+. .++.|+. +|.
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcE
Confidence 346778888999999999999887665321 1110 0000 00000 00001 011 2334432 688
Q ss_pred EEEEeCCCCeEEEEEeCC----------------C-CCE-EEEEEcCCCCEEEEEe------------------CCCcEE
Q 008467 474 VKLWDVELGKLLYSLNGH----------------R-EPV-YSLAFSPTGEYLASGS------------------LDKSMH 517 (564)
Q Consensus 474 i~iwd~~~~~~~~~~~~h----------------~-~~i-~~~~~spdg~~lasgs------------------~dg~i~ 517 (564)
|+-+|+++|+.+..+..- . ..+ ..+++.|....+..+. ..+.|.
T Consensus 338 I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv 417 (764)
T TIGR03074 338 IRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV 417 (764)
T ss_pred EEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence 999999999999876421 0 011 2234555443333211 235678
Q ss_pred EEeCCCCeEEEEEec-CCCE-----------EEEEEccCCC---EEEEEEcCCcEEEEEee
Q 008467 518 IWSLKEGKIVKTYTG-NGGI-----------FEVCWNKEGD---KIAACFANHTVCVLDFR 563 (564)
Q Consensus 518 iw~~~~~~~~~~~~~-~~~i-----------~~~~w~~~g~---~la~~~~~~~v~v~~~~ 563 (564)
-.|.++|++...|+. +..+ .++. ..+|+ .|+.+..+|.+.++|-+
T Consensus 418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~-~~~G~~~~~v~~~~K~G~~~vlDr~ 477 (764)
T TIGR03074 418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLP-DADGTTVPALVAPTKQGQIYVLDRR 477 (764)
T ss_pred EEeCCCCceEEEecccCCccccccccCCceEEeee-cCCCcEeeEEEEECCCCEEEEEECC
Confidence 888999998887764 2222 2332 12664 78888899999999854
No 417
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.14 E-value=16 Score=40.21 Aligned_cols=314 Identities=12% Similarity=0.163 Sum_probs=157.1
Q ss_pred eEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCe
Q 008467 219 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ 298 (564)
Q Consensus 219 V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~ 298 (564)
|-.+.|--|..+|+.+.+||.+.-+-+...+-... ..+. ..-...+++--.|+..++.-+-+..|.-
T Consensus 586 Il~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~ls---------d~Kk----~~lGt~P~~Lr~f~sk~~t~vfa~sdrP 652 (1096)
T KOG1897|consen 586 ILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLS---------DRKK----VTLGTQPISLRTFSSKSRTAVFALSDRP 652 (1096)
T ss_pred eeeEEeeccceEEEEEcCCceEEEEEEEcccceEc---------cccc----cccCCCCcEEEEEeeCCceEEEEeCCCC
Confidence 44455656678899999999888765543221000 0000 0112355666677776666566667777
Q ss_pred EEEEECCCceeEeecCCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCcc--eeEEEeecccCeEEEEcCC-CceEE
Q 008467 299 ARIWSTNGDLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSGPTLDVDWRN-NVSFA 373 (564)
Q Consensus 299 i~vw~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~ 373 (564)
..+|..++++..+.-.-+..-....|+.+ ...++++. .+.+++--+..-. .+++...+. +...+++.+ ...|.
T Consensus 653 ~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~-~prrI~~q~~sl~~~ 730 (1096)
T KOG1897|consen 653 TVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGE-SPRRICYQESSLTFG 730 (1096)
T ss_pred EEEEecCCcEEEeccchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCC-ChhheEecccceEEE
Confidence 78888777765432211111111223322 23344443 3455555432211 112222211 122233333 22233
Q ss_pred EEeC-----------CCeEEEEEcCCCceeeEecCCC-------cceEEEEECCC-CCEEEEEe----------CCCcEE
Q 008467 374 TSST-----------DNMIYVCKIGENRPIKTFAGHQ-------GEVNCVKWDPT-GSLLASCS----------DDVTAK 424 (564)
Q Consensus 374 ~~~~-----------d~~i~~~~~~~~~~~~~~~~h~-------~~i~~v~~~~~-~~~las~s----------~dg~i~ 424 (564)
..+. ...+...++-......++..|. -.|.++.|..| +++++.|. ..|.|.
T Consensus 731 v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIi 810 (1096)
T KOG1897|consen 731 VLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRII 810 (1096)
T ss_pred EEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEE
Confidence 2221 1222222221222233333343 13556668777 66777764 235666
Q ss_pred EEeCCCCeeeeeccc--ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcC
Q 008467 425 IWNMKQDKYVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP 502 (564)
Q Consensus 425 iwd~~~~~~~~~~~~--~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp 502 (564)
++.+...+.+..+.. -.+.++++.-- +| .+| ++....|++|++.+.+.++.-..|..++..+...-
T Consensus 811 vfe~~e~~~L~~v~e~~v~Gav~aL~~f-ng---------kll--A~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v 878 (1096)
T KOG1897|consen 811 VFEFEELNSLELVAETVVKGAVYALVEF-NG---------KLL--AGINQSVRLYEWTTERELRIECNISNPIIALDLQV 878 (1096)
T ss_pred EEEEecCCceeeeeeeeeccceeehhhh-CC---------eEE--EecCcEEEEEEccccceehhhhcccCCeEEEEEEe
Confidence 666544222222111 12334443321 11 133 45678999999998877777777889999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCC--CeEEEEEe--cCCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467 503 TGEYLASGSLDKSMHIWSLKE--GKIVKTYT--GNGGIFEVCWNKEGDKIAACFANHTVCVL 560 (564)
Q Consensus 503 dg~~lasgs~dg~i~iw~~~~--~~~~~~~~--~~~~i~~~~w~~~g~~la~~~~~~~v~v~ 560 (564)
.|..+|.|..-+++.+-..+. |.....-+ ....+..+..= +++..+.+-.+|.+.+.
T Consensus 879 ~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil-~~d~ylgae~~gNlf~v 939 (1096)
T KOG1897|consen 879 KGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEIL-DDDTYLGAENSGNLFTV 939 (1096)
T ss_pred cCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEe-cCceEEeecccccEEEE
Confidence 999999999888776655543 32322211 12233444433 34444445455555443
No 418
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.08 E-value=7.7 Score=36.30 Aligned_cols=178 Identities=13% Similarity=0.138 Sum_probs=98.4
Q ss_pred EEEEECCCCCEEEEEECCC--cEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCC
Q 008467 220 CACAWSPAGSLLASGSGDS--TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 297 (564)
Q Consensus 220 ~~~~~sp~~~~lasgs~D~--~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg 297 (564)
..+.|..+|.++-|.|.-| .++.+|+.+++.... .......-+ ..++-+ ++++..-.-.++
T Consensus 48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~-----------~~l~~~~Fg--EGit~~----~d~l~qLTWk~~ 110 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQS-----------VPLPPRYFG--EGITIL----GDKLYQLTWKEG 110 (264)
T ss_dssp EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEE-----------EE-TTT--E--EEEEEE----TTEEEEEESSSS
T ss_pred ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEE-----------EECCccccc--eeEEEE----CCEEEEEEecCC
Confidence 4577877888888877554 799999988753211 111110000 012211 223334445678
Q ss_pred eEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeeccc-----CeEEEEcCCCce
Q 008467 298 QARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-----PTLDVDWRNNVS 371 (564)
Q Consensus 298 ~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 371 (564)
...+||.+. +...++. ..+.=++|+ .+++.|+.......+.++|+.+.+....+..... ....+.|.+...
T Consensus 111 ~~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~I 187 (264)
T PF05096_consen 111 TGFVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKI 187 (264)
T ss_dssp EEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEE
T ss_pred eEEEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEE
Confidence 889999864 3333342 334557777 4567777777777899999988777665543321 234556666666
Q ss_pred EEEEeCCCeEEEEEcCCCceeeEec------------CC---CcceEEEEECCCCCE-EEEE
Q 008467 372 FATSSTDNMIYVCKIGENRPIKTFA------------GH---QGEVNCVKWDPTGSL-LASC 417 (564)
Q Consensus 372 ~~~~~~d~~i~~~~~~~~~~~~~~~------------~h---~~~i~~v~~~~~~~~-las~ 417 (564)
+|-.=....|...|..+++.+..+. .+ .+-.+.|||+|.... ++||
T Consensus 188 yANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 188 YANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 6655555666666666666554331 01 345789999887665 4555
No 419
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.93 E-value=10 Score=37.35 Aligned_cols=54 Identities=13% Similarity=0.145 Sum_probs=34.5
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEE---EE-eCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008467 464 ILASASFDSTVKLWDVELGKLLY---SL-NGHREPVYSLAFSPTGEYLASGSLDKSMH 517 (564)
Q Consensus 464 ~l~s~s~dg~i~iwd~~~~~~~~---~~-~~h~~~i~~~~~spdg~~lasgs~dg~i~ 517 (564)
++++.-..+.|....+..+..+. .+ ......+..|++.|||.++++-+.+|.|.
T Consensus 273 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 273 LFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred EEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 45544445677777776443322 22 23444799999999999998888888764
No 420
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.90 E-value=0.44 Score=52.34 Aligned_cols=151 Identities=16% Similarity=0.138 Sum_probs=88.9
Q ss_pred ceEEEEECCCCCE--EEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC-CEEEEEe
Q 008467 218 EVCACAWSPAGSL--LASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG-TLLATGS 294 (564)
Q Consensus 218 ~V~~~~~sp~~~~--lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~l~sg~ 294 (564)
++..+..++|++. ++..+.+-.|..+|+.+-......+..++.. +. .......-+.++.|+|.- ...+...
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~----s~--ts~ek~vf~~~~~wnP~vp~n~av~l 175 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKN----SA--TSFEKPVFQLKNVWNPLVPLNSAVDL 175 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhcccccc----cc--chhccccccccccccCCccchhhhhc
Confidence 3445555667553 3444555678889986532111111111100 00 011122346788999854 3456677
Q ss_pred CCCeEEEEECCCceeEe-ecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE---eec-ccCeEEEEcCCC
Q 008467 295 YDGQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF---EFH-SGPTLDVDWRNN 369 (564)
Q Consensus 295 ~dg~i~vw~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~---~~~-~~~~~~~~~~~~ 369 (564)
.|+.|++..+....... --.....+++++|+|.|++++.|-..|++..|-..-. .+..+ ... ...+.++.|...
T Consensus 176 ~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 176 SDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred cccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecc
Confidence 88999988754322111 1134567899999999999999999999999975432 22221 111 356889999888
Q ss_pred ceEEEE
Q 008467 370 VSFATS 375 (564)
Q Consensus 370 ~~~~~~ 375 (564)
..|+..
T Consensus 255 ~eflvv 260 (1405)
T KOG3630|consen 255 QEFLVV 260 (1405)
T ss_pred eeEEEE
Confidence 777654
No 421
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.80 E-value=0.43 Score=30.46 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=26.3
Q ss_pred CCEEEEEEcCCC---CEEEEEeCCCcEEEEeCCC
Q 008467 493 EPVYSLAFSPTG---EYLASGSLDKSMHIWSLKE 523 (564)
Q Consensus 493 ~~i~~~~~spdg---~~lasgs~dg~i~iw~~~~ 523 (564)
+.|.++.|||.. .+||.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 358899999854 5899888899999999985
No 422
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.66 E-value=7.3 Score=39.09 Aligned_cols=101 Identities=14% Similarity=0.236 Sum_probs=52.6
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-----e---eeeeccc----ccccEEEEEEccCCCCCCCCCCcEEEEEE
Q 008467 401 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-----K---YVHDLRE----HSKEIYTIRWSPTGSGTNNPNQQLILASA 468 (564)
Q Consensus 401 ~i~~v~~~~~~~~las~s~dg~i~iwd~~~~-----~---~~~~~~~----~~~~i~~i~~~p~~~~~~~~~~~~~l~s~ 468 (564)
..+.+++.++| ++++ +.....++.|.... + .+..+.. +......+.|.|+|. +++..+
T Consensus 73 ~p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~--------LYv~~G 142 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW--------LYFNHG 142 (367)
T ss_pred CccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC--------EEEecc
Confidence 45678888887 5554 33333334344321 1 1122222 123356788888764 344444
Q ss_pred eC------------------CCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC
Q 008467 469 SF------------------DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL 512 (564)
Q Consensus 469 s~------------------dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~ 512 (564)
+. .|.|.-++...++......++. ....++|+|+|+++++-..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~r-np~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 143 NTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQ-NPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred cCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcC-CCccceECCCCCEEEEccC
Confidence 21 1445555665444322223443 3478999999998876443
No 423
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.60 E-value=6.4 Score=41.83 Aligned_cols=186 Identities=12% Similarity=0.194 Sum_probs=91.4
Q ss_pred CcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceee---EecCCCcceEEEEECCCCCEE
Q 008467 338 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIK---TFAGHQGEVNCVKWDPTGSLL 414 (564)
Q Consensus 338 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~---~~~~h~~~i~~v~~~~~~~~l 414 (564)
-.|+|++.. |..........+.++.+.|..+..++.-..+|+++++++-....-. -+......|.-+.+..+|-.+
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVav 142 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAV 142 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEE
Confidence 457777753 3333333333447888999999999999999999999875432111 011112234444444455333
Q ss_pred EEEeCCCcEEEEeCCCCeeeeeccc-ccccEEEEEEccCCCCCCCCCCcEEEEEEe-CCCeEEEEeCCCCe-EEEEEeCC
Q 008467 415 ASCSDDVTAKIWNMKQDKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVELGK-LLYSLNGH 491 (564)
Q Consensus 415 as~s~dg~i~iwd~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~-~~~~~~~h 491 (564)
-..+|.+.+-.-........+.. ........+|.-.... .+...++--. ..+ ..+.-+..+. ....+...
T Consensus 143 --lt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~----~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~ 215 (829)
T KOG2280|consen 143 --LTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPH----RQSTILLDVDVAVG-LHICQVEESRVQLHALSWP 215 (829)
T ss_pred --EecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCC----CcceeEEeechhhh-hcccceecccccccccCCC
Confidence 33344544433222211222221 1111111233211100 0001111110 000 0111111111 11122212
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q 008467 492 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT 531 (564)
Q Consensus 492 ~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~ 531 (564)
...+..++.||++++||.-..+|.|.+-+....+....+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 2457889999999999999999999998887766666654
No 424
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.52 E-value=0.75 Score=42.18 Aligned_cols=64 Identities=20% Similarity=0.310 Sum_probs=49.0
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE---------------ecCCCEEEEEEccCCCEEEEEEcCCcEEEEEeeC
Q 008467 500 FSPTGEYLASGSLDKSMHIWSLKEGKIVKTY---------------TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 564 (564)
Q Consensus 500 ~spdg~~lasgs~dg~i~iw~~~~~~~~~~~---------------~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~~ 564 (564)
+..++.+|.+-+.+|.+++||+.+++.+... .....|..+..+.+|.-|++ ..||...+||..|
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~-lsng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT-LSNGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE-EeCCCEEEecccc
Confidence 4557889999999999999999998864332 12345788888988987665 4678889998654
No 425
>PRK10115 protease 2; Provisional
Probab=92.24 E-value=21 Score=39.21 Aligned_cols=235 Identities=7% Similarity=0.038 Sum_probs=111.7
Q ss_pred CeEEEEECCCCCEEEEEeCC-C----eEEEEECCCce--eEeecCCCCCEEEEEeCCCCCEEEEeeCC------CcEEEE
Q 008467 277 DVTTLDWNGEGTLLATGSYD-G----QARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLLTGSCD------KTAIVW 343 (564)
Q Consensus 277 ~V~~l~~s~~g~~l~sg~~d-g----~i~vw~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s~D------~~v~iw 343 (564)
.+..+.|||||++|+.+... | .+++-+..+.. ...+.. .-..+.|.++++.|+-...+ ..|..|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 46778999999988876443 2 57777775332 112221 11569999999876655432 357777
Q ss_pred ECCCc--ceeEEEeecccCeEEEEc-C-CCc-eEEEE--eCCCeEEEEEcC--CCceeeEecCCCcceEEEEECCCCCEE
Q 008467 344 DVKTE--EWKQQFEFHSGPTLDVDW-R-NNV-SFATS--STDNMIYVCKIG--ENRPIKTFAGHQGEVNCVKWDPTGSLL 414 (564)
Q Consensus 344 d~~~~--~~~~~~~~~~~~~~~~~~-~-~~~-~~~~~--~~d~~i~~~~~~--~~~~~~~~~~h~~~i~~v~~~~~~~~l 414 (564)
++.++ +-...+........-..+ . +.. .++.+ ..++.+++++.. ...+...+..-.+....+. +..+.++
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly 283 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFY 283 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEE
Confidence 88777 333334322222221112 2 222 23222 234567777742 2222212211111111222 2223333
Q ss_pred EEEeC-CCcEEEE--eCCCCeeeeecccc-c-ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEEEE
Q 008467 415 ASCSD-DVTAKIW--NMKQDKYVHDLREH-S-KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSL 488 (564)
Q Consensus 415 as~s~-dg~i~iw--d~~~~~~~~~~~~~-~-~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~ 488 (564)
+.... ....+|. ++.....-..+..+ . ..+..+.+..+ .++++...+|.-+++-+.. +..+..+
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~----------~l~~~~~~~g~~~l~~~~~~~~~~~~l 353 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD----------WLVVEERQRGLTSLRQINRKTREVIGI 353 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC----------EEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence 32222 1233333 33311111233334 2 35666666522 3677777787766654432 2333443
Q ss_pred e-CCCCCEEEEEEc--CCC-CEEEEEeC---CCcEEEEeCCCCe
Q 008467 489 N-GHREPVYSLAFS--PTG-EYLASGSL---DKSMHIWSLKEGK 525 (564)
Q Consensus 489 ~-~h~~~i~~~~~s--pdg-~~lasgs~---dg~i~iw~~~~~~ 525 (564)
. .....+..+.++ +++ .++++.+. -+.+..+|..+++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 354 AFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred cCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 3 222223334455 444 34444432 3678899988765
No 426
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.99 E-value=11 Score=35.39 Aligned_cols=140 Identities=16% Similarity=0.214 Sum_probs=86.4
Q ss_pred EEEECCCCCE-EEEEeCCCc-EEEEeCCCCeeeeecccccccEE--EEEEccCCCCCCCCCCcEEEEEEe----CCCeEE
Q 008467 404 CVKWDPTGSL-LASCSDDVT-AKIWNMKQDKYVHDLREHSKEIY--TIRWSPTGSGTNNPNQQLILASAS----FDSTVK 475 (564)
Q Consensus 404 ~v~~~~~~~~-las~s~dg~-i~iwd~~~~~~~~~~~~~~~~i~--~i~~~p~~~~~~~~~~~~~l~s~s----~dg~i~ 475 (564)
.++++|..+. ++-+-.-|+ ..++|.........+....+.-+ .-.|+|+|. ++.+|-. .-|.|-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~--------~LYATEndfd~~rGViG 143 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR--------LLYATENDFDPNRGVIG 143 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCc--------EEEeecCCCCCCCceEE
Confidence 3677776543 555666665 46788877665544432222111 124666664 3333321 136799
Q ss_pred EEeCCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeC------C------------CcEEEEeCCCCeEEEEEec----
Q 008467 476 LWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSL------D------------KSMHIWSLKEGKIVKTYTG---- 532 (564)
Q Consensus 476 iwd~~~~-~~~~~~~~h~~~i~~~~~spdg~~lasgs~------d------------g~i~iw~~~~~~~~~~~~~---- 532 (564)
|||.+.+ +.+.++..|.-.-..+.|.+||+.|+.+.. | -++.+.|..+|.++....-
T Consensus 144 vYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l 223 (366)
T COG3490 144 VYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASL 223 (366)
T ss_pred EEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhh
Confidence 9998854 446678888877889999999999987643 1 2344555555655433221
Q ss_pred -CCCEEEEEEccCCCEEEEE
Q 008467 533 -NGGIFEVCWNKEGDKIAAC 551 (564)
Q Consensus 533 -~~~i~~~~w~~~g~~la~~ 551 (564)
.-+|..++..+||+.++.|
T Consensus 224 ~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 224 RQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred hhcceeeeeeCCCCcEEEEE
Confidence 2357789999999988877
No 427
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=91.73 E-value=2.9 Score=44.49 Aligned_cols=133 Identities=16% Similarity=0.307 Sum_probs=71.7
Q ss_pred EEEEECCCCCEEEEEeCC----CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCC-----cEEEEECCCcc
Q 008467 279 TTLDWNGEGTLLATGSYD----GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK-----TAIVWDVKTEE 349 (564)
Q Consensus 279 ~~l~~s~~g~~l~sg~~d----g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~-----~v~iwd~~~~~ 349 (564)
+.+.|-.|..+.+.+... ..+|+|...|.+-..-...++.=..+.|-|+|..++|-..|| .|+++.. +|-
T Consensus 205 ~~i~wrgD~~y~~v~r~Ee~prra~rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGL 283 (1243)
T COG5290 205 KIIFWRGDTEYNLVGRSEERPRRAFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFER-NGL 283 (1243)
T ss_pred eEEEEccCcceeeecchhcccccceeeeccccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEcc-CCc
Confidence 456788888888877653 467888877765443333444445589999999999987665 3555542 221
Q ss_pred eeEEEeec---ccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC
Q 008467 350 WKQQFEFH---SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS 412 (564)
Q Consensus 350 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~ 412 (564)
....|... ...+...+|.-...+......+.+.+|..++-.-.....-.-..+.-+.|+|...
T Consensus 284 rHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 284 RHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEK 349 (1243)
T ss_pred ccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccC
Confidence 11112111 1123344554444333444566677776544221111111122355677887654
No 428
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.67 E-value=3.2 Score=45.25 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=48.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCC----------CeE--E-EEEe---------cCCCEEEEEEccCC---CEE
Q 008467 494 PVYSLAFSPTGEYLASGSLDKSMHIWSLKE----------GKI--V-KTYT---------GNGGIFEVCWNKEG---DKI 548 (564)
Q Consensus 494 ~i~~~~~spdg~~lasgs~dg~i~iw~~~~----------~~~--~-~~~~---------~~~~i~~~~w~~~g---~~l 548 (564)
.|..|.+||+|++||..|..|. .|-.+.. |+. . +++. ....|..+.|+|.+ .+|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 4788999999999999998774 4444321 111 1 1221 12347789999974 799
Q ss_pred EEEEcCCcEEEEEee
Q 008467 549 AACFANHTVCVLDFR 563 (564)
Q Consensus 549 a~~~~~~~v~v~~~~ 563 (564)
++=..|+.+++||+.
T Consensus 165 ~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 165 VVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEecCCEEEEEecC
Confidence 999999999999974
No 429
>PRK10115 protease 2; Provisional
Probab=91.52 E-value=25 Score=38.61 Aligned_cols=193 Identities=9% Similarity=0.069 Sum_probs=97.9
Q ss_pred cceEEEEECCCCCEEEEEECC-----CcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEE
Q 008467 217 SEVCACAWSPAGSLLASGSGD-----STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 291 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D-----~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~ 291 (564)
-.+..+.|||+|++||.+... ..+++-|+.++...... . ...-..++|++|++.|+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~------------i-------~~~~~~~~w~~D~~~~~ 187 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL------------L-------DNVEPSFVWANDSWTFY 187 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc------------c-------cCcceEEEEeeCCCEEE
Confidence 346678999999988875422 24677777655311100 0 01114589999998776
Q ss_pred EEeCC------CeEEEEECCCc---eeEeecCCCCCEE-EEEeCCCCCEEEEeeC---CCcEEEEEC--CCcceeEEEee
Q 008467 292 TGSYD------GQARIWSTNGD---LKCTLSKHKGPIF-SLKWNKKGDYLLTGSC---DKTAIVWDV--KTEEWKQQFEF 356 (564)
Q Consensus 292 sg~~d------g~i~vw~~~~~---~~~~~~~h~~~V~-~l~~~~~~~~l~s~s~---D~~v~iwd~--~~~~~~~~~~~ 356 (564)
....+ ..|+.++.... ....+........ .+..+.++.+++..+. ++.+.+++. .++.....+..
T Consensus 188 y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 267 (686)
T PRK10115 188 YVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR 267 (686)
T ss_pred EEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC
Confidence 66543 25666666533 2223333333333 3333447777654443 346888884 23433222222
Q ss_pred cccCeEEEEcCCCceEEEEeC---CCeEEEEEcCCCceeeEecCC-C-cceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008467 357 HSGPTLDVDWRNNVSFATSST---DNMIYVCKIGENRPIKTFAGH-Q-GEVNCVKWDPTGSLLASCSDDVTAKIWNMK 429 (564)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~---d~~i~~~~~~~~~~~~~~~~h-~-~~i~~v~~~~~~~~las~s~dg~i~iwd~~ 429 (564)
.......+.-..+..++.... ...|...++.....-..+..+ . ..|..+.+. ...++++...+|.-+++-+.
T Consensus 268 ~~~~~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 268 RKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred CCCCEEEEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 222222222122333333222 223444444421222333344 3 367778887 44667777778876666543
No 430
>PHA02790 Kelch-like protein; Provisional
Probab=91.44 E-value=12 Score=38.99 Aligned_cols=103 Identities=11% Similarity=0.057 Sum_probs=50.3
Q ss_pred CEEEEeeCC-----CcEEEEECCCcceeEEEeecccC-eEEEEcCCCceEEEEeCC--CeEEEEEcCCCc--eeeEecCC
Q 008467 329 DYLLTGSCD-----KTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTD--NMIYVCKIGENR--PIKTFAGH 398 (564)
Q Consensus 329 ~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d--~~i~~~~~~~~~--~~~~~~~h 398 (564)
..++.|+.+ .++..||+.++.|...-...... .......++..++.|+.+ ..+..|+...+. .+..+...
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~ 352 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKP 352 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCC
Confidence 334555543 25677888887776533222111 122233456666776643 345566654332 11111111
Q ss_pred CcceEEEEECCCCCEEEEEeCCC---cEEEEeCCCCee
Q 008467 399 QGEVNCVKWDPTGSLLASCSDDV---TAKIWNMKQDKY 433 (564)
Q Consensus 399 ~~~i~~v~~~~~~~~las~s~dg---~i~iwd~~~~~~ 433 (564)
......+.+ +|++.+.|+.++ .+..||..+...
T Consensus 353 r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 353 RCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred CcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEE
Confidence 111122222 577778877654 466788766543
No 431
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.39 E-value=1.1 Score=28.26 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=30.3
Q ss_pred CCCCEEEEEe-CCCcEEEEeCCCCeEEEEEecCCCEEEEEEc
Q 008467 502 PTGEYLASGS-LDKSMHIWSLKEGKIVKTYTGNGGIFEVCWN 542 (564)
Q Consensus 502 pdg~~lasgs-~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~ 542 (564)
|++++|.++. .+++|.++|..+++.+..+........++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 6787776554 5789999999999988887765445566553
No 432
>PHA03098 kelch-like protein; Provisional
Probab=90.90 E-value=11 Score=39.90 Aligned_cols=144 Identities=9% Similarity=0.059 Sum_probs=67.0
Q ss_pred CCCEEEEEeCCC------eEEEEECCCceeEeecCC---CCCEEEEEeCCCCCEEEEeeCC-----CcEEEEECCCccee
Q 008467 286 EGTLLATGSYDG------QARIWSTNGDLKCTLSKH---KGPIFSLKWNKKGDYLLTGSCD-----KTAIVWDVKTEEWK 351 (564)
Q Consensus 286 ~g~~l~sg~~dg------~i~vw~~~~~~~~~~~~h---~~~V~~l~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~ 351 (564)
++.+++.||.++ .+..||........+... ......+. -++..++.|+.+ ..+..||+.+..|.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 456667776543 455666544332222211 11111222 245566667655 35778999888876
Q ss_pred EEEeeccc-CeEEEEcCCCceEEEEeCC------CeEEEEEcCCCce--eeEecCCCcceEEEEECCCCCEEEEEeCCC-
Q 008467 352 QQFEFHSG-PTLDVDWRNNVSFATSSTD------NMIYVCKIGENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDDV- 421 (564)
Q Consensus 352 ~~~~~~~~-~~~~~~~~~~~~~~~~~~d------~~i~~~~~~~~~~--~~~~~~h~~~i~~v~~~~~~~~las~s~dg- 421 (564)
..-..... ....+...++..++.++.+ +.+..|+..+++= +..+........++. .++++++.|+.++
T Consensus 372 ~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~ 449 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY--HDGKIYVIGGISYI 449 (534)
T ss_pred eCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE--ECCEEEEECCccCC
Confidence 53221111 1112222345566666521 3466777654321 111110011111222 2566667776432
Q ss_pred -------cEEEEeCCCCee
Q 008467 422 -------TAKIWNMKQDKY 433 (564)
Q Consensus 422 -------~i~iwd~~~~~~ 433 (564)
.+.+||..+.+.
T Consensus 450 ~~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKW 468 (534)
T ss_pred CCCcccceEEEecCCCCce
Confidence 267778766543
No 433
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=90.81 E-value=20 Score=36.32 Aligned_cols=142 Identities=15% Similarity=0.165 Sum_probs=81.9
Q ss_pred CCCEEEEEeCCCeEEEEECCCce-----eEeecCCCCCEEEEEeCC----CCCEEEEeeCCCcEEEEECCC--cc-----
Q 008467 286 EGTLLATGSYDGQARIWSTNGDL-----KCTLSKHKGPIFSLKWNK----KGDYLLTGSCDKTAIVWDVKT--EE----- 349 (564)
Q Consensus 286 ~g~~l~sg~~dg~i~vw~~~~~~-----~~~~~~h~~~V~~l~~~~----~~~~l~s~s~D~~v~iwd~~~--~~----- 349 (564)
+...+++|+..|.+|||+..... ...-..-..||..+..-+ .....++.=.-+.+.+|.+.. +.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 34689999999999999975421 111123457888876532 223334445567788887621 11
Q ss_pred ---eeEEEeeccc-CeEEE---EcC---CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC
Q 008467 350 ---WKQQFEFHSG-PTLDV---DWR---NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 419 (564)
Q Consensus 350 ---~~~~~~~~~~-~~~~~---~~~---~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~ 419 (564)
+...++.+-. ....+ .+. ....+..-+.||.+.+++-+.-.-...+.+ ---.-.+.|.+....|++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 1111221111 11111 221 135567788999999988655332222322 112234677788888999999
Q ss_pred CCcEEEEeC
Q 008467 420 DVTAKIWNM 428 (564)
Q Consensus 420 dg~i~iwd~ 428 (564)
+..+..|..
T Consensus 195 s~~l~~Yky 203 (418)
T PF14727_consen 195 SWTLECYKY 203 (418)
T ss_pred ceeEEEecH
Confidence 999988874
No 434
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.58 E-value=4 Score=41.19 Aligned_cols=140 Identities=12% Similarity=0.171 Sum_probs=83.5
Q ss_pred eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCC--------CEEEEEeCCCcEEEEeCCCCe-e--eeeccc
Q 008467 371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG--------SLLASCSDDVTAKIWNMKQDK-Y--VHDLRE 439 (564)
Q Consensus 371 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~--------~~las~s~dg~i~iwd~~~~~-~--~~~~~~ 439 (564)
.|..++....++-.|+.-++.+..+.-|..- -+.|.|+. +.|+--|..+..| .|.+-.. . +...+
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFr-IDPR~~gNKi~v~esK- 557 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFR-IDPRARGNKIKVVESK- 557 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEE-ecccccCCceeeeeeh-
Confidence 4455666677888888888888888877665 46777753 3344444444333 3543221 1 11111
Q ss_pred ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008467 440 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW 519 (564)
Q Consensus 440 ~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw 519 (564)
...+.-.|+..+. ...-++|.||.-|.||+||--.-+....+.+....|-.|..+.+|++|.+.+.. .+.+-
T Consensus 558 --dY~tKn~Fss~~t-----TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~ 629 (776)
T COG5167 558 --DYKTKNKFSSGMT-----TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLT 629 (776)
T ss_pred --hcccccccccccc-----ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEE
Confidence 1122223332211 112379999999999999954223333455667789999999999998765543 46666
Q ss_pred eCC
Q 008467 520 SLK 522 (564)
Q Consensus 520 ~~~ 522 (564)
|++
T Consensus 630 d~~ 632 (776)
T COG5167 630 DVP 632 (776)
T ss_pred ecc
Confidence 653
No 435
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.52 E-value=0.039 Score=54.61 Aligned_cols=132 Identities=14% Similarity=0.255 Sum_probs=91.0
Q ss_pred EEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC--CceEEEEeCCCeEEEEEcCCCceeeEecC
Q 008467 320 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTFAG 397 (564)
Q Consensus 320 ~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~ 397 (564)
....|-|.+..++.++.+..+..||-... ..... ...+..++++|.- +...+.....+.+++|++......+.-.+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq-~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcc-eeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 45678898888999999999999985432 22111 1123345666643 34556677888999999876543221112
Q ss_pred CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCC
Q 008467 398 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 453 (564)
Q Consensus 398 h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~ 453 (564)
-+..-.-+.|++.+..++.+-..|.++|++..+.+.+..+-.|...+++++|.+.+
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd 171 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED 171 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc
Confidence 22222237899999999999999999999988877665555588999999998865
No 436
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.15 E-value=9.5 Score=31.47 Aligned_cols=120 Identities=16% Similarity=0.100 Sum_probs=72.4
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCe--------eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE
Q 008467 404 CVKWDPTGSLLASCSDDVTAKIWNMKQDK--------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK 475 (564)
Q Consensus 404 ~v~~~~~~~~las~s~dg~i~iwd~~~~~--------~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~ 475 (564)
.-+|......|+.++.-|+|.|.+..... .+..+ .-...|++++-.|-.. ....-.|+.|+ ..++.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~----~~~~D~LliGt-~t~ll 76 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKP----DDGRDCLLIGT-QTSLL 76 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCC----CCCcCEEEEec-cceEE
Confidence 34566666778888888999999865332 22222 2345677776554322 11122455565 46799
Q ss_pred EEeCCCCeEEEEEeCCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 008467 476 LWDVELGKLLYSLNGHREPVYSLAFSP---TGEYLASGSLDKSMHIWSLKEGKIVKTY 530 (564)
Q Consensus 476 iwd~~~~~~~~~~~~h~~~i~~~~~sp---dg~~lasgs~dg~i~iw~~~~~~~~~~~ 530 (564)
.||+.....++.-. -...|+++.+-. ...-|+..+.+..|.-||....++.++.
T Consensus 77 aYDV~~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 77 AYDVENNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred EEEcccCchhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 99998777665433 235677777632 2234555555778888887766665554
No 437
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=90.14 E-value=21 Score=35.45 Aligned_cols=49 Identities=24% Similarity=0.492 Sum_probs=25.5
Q ss_pred eEEEEeCCCCeEEEE---------EeCCCC-CEEEEEEcCCCCEEE-EEeCCCcEEEEeC
Q 008467 473 TVKLWDVELGKLLYS---------LNGHRE-PVYSLAFSPTGEYLA-SGSLDKSMHIWSL 521 (564)
Q Consensus 473 ~i~iwd~~~~~~~~~---------~~~h~~-~i~~~~~spdg~~la-sgs~dg~i~iw~~ 521 (564)
-|+++++..++...- +.++.. .=-...|||||++++ +....|...||-+
T Consensus 321 ~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 321 WIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred EEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 567788887664311 111111 124578999999875 5556777777754
No 438
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.13 E-value=11 Score=33.63 Aligned_cols=171 Identities=18% Similarity=0.205 Sum_probs=81.8
Q ss_pred CCCEEEEEE--CCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccc-cccCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 008467 227 AGSLLASGS--GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR-TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWS 303 (564)
Q Consensus 227 ~~~~lasgs--~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~ 303 (564)
+|.++.+.+ +.+.|++|++.+++........+. ...+. ...-...+..+.| .+|...++|
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~------~~FgEGit~~gd~~y~LTw-----------~egvaf~~d 117 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPD------TVFGEGITKLGDYFYQLTW-----------KEGVAFKYD 117 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCc------cccccceeeccceEEEEEe-----------ccceeEEEC
Confidence 456777766 456899999988764321111100 00000 0001122333333 456666776
Q ss_pred CCCce-eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee--cccC---eEEEEcCCCceEEEEeC
Q 008467 304 TNGDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF--HSGP---TLDVDWRNNVSFATSST 377 (564)
Q Consensus 304 ~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~ 377 (564)
.+... ...+ .-.+.=++++ .++..|+.++...+++.=|+++......... ...| ...+.|.+...++-.=.
T Consensus 118 ~~t~~~lg~~-~y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~ 194 (262)
T COG3823 118 ADTLEELGRF-SYEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQ 194 (262)
T ss_pred hHHhhhhccc-ccCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeee
Confidence 54321 1111 1233445554 4555577666556677667766544333222 1222 23445555554443333
Q ss_pred CCeEEEEEcCCCceeeEe------------cCCCcceEEEEECCCC-CEEEEE
Q 008467 378 DNMIYVCKIGENRPIKTF------------AGHQGEVNCVKWDPTG-SLLASC 417 (564)
Q Consensus 378 d~~i~~~~~~~~~~~~~~------------~~h~~~i~~v~~~~~~-~~las~ 417 (564)
...|...+..+++.+..+ ..|.+..+.+++.|++ ++++||
T Consensus 195 t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 195 TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 333333344444433222 2344567889999887 556665
No 439
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.05 E-value=11 Score=37.58 Aligned_cols=123 Identities=16% Similarity=0.300 Sum_probs=76.5
Q ss_pred eeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee----eecccccccEEEEEEccCCCCCCCCCCcEEEE
Q 008467 391 PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV----HDLREHSKEIYTIRWSPTGSGTNNPNQQLILA 466 (564)
Q Consensus 391 ~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~----~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~ 466 (564)
|+..-....++|.++.|++|.+.+|.--.|.+|.+++....+.. ++-+..+..|....|.... -+|
T Consensus 58 piSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~----------e~A 127 (657)
T KOG2377|consen 58 PISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST----------EIA 127 (657)
T ss_pred CceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe----------eEE
Confidence 33333445679999999999999999999999999987544332 2223344568888997652 133
Q ss_pred EEeCCCeEEEEeCCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEeCCCC
Q 008467 467 SASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGS--LDKSMHIWSLKEG 524 (564)
Q Consensus 467 s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~spdg~~lasgs--~dg~i~iw~~~~~ 524 (564)
--+.. -+-+|-+... +.+...+.|...|+--.|.|+.+.+..++ ..+++.=+.++++
T Consensus 128 ~i~~~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 128 FITDQ-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EEecC-CeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 33322 3556654422 23344556777888888998887654433 2334444444444
No 440
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.00 E-value=1.4 Score=28.15 Aligned_cols=31 Identities=29% Similarity=0.514 Sum_probs=25.9
Q ss_pred cceEEEEECCCC---CEEEEEeCCCcEEEEeCCC
Q 008467 400 GEVNCVKWDPTG---SLLASCSDDVTAKIWNMKQ 430 (564)
Q Consensus 400 ~~i~~v~~~~~~---~~las~s~dg~i~iwd~~~ 430 (564)
+.|.+++|+|.. .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 357899999855 4888888889999999985
No 441
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.93 E-value=5.7 Score=40.33 Aligned_cols=94 Identities=11% Similarity=0.080 Sum_probs=52.5
Q ss_pred CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEec
Q 008467 317 GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA 396 (564)
Q Consensus 317 ~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 396 (564)
-.|..+..++.|..++-.+.+|.+.++=.+....-..++.....+.+-.+.-+.. .|.
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~----------------------~ft 161 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAER----------------------FFT 161 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccce----------------------eec
Confidence 3567788899999998888888776653222111111111111111111111111 111
Q ss_pred C-CCcceEEEEECCCC---CEEEEEeCCCcEEEEeCCCCe
Q 008467 397 G-HQGEVNCVKWDPTG---SLLASCSDDVTAKIWNMKQDK 432 (564)
Q Consensus 397 ~-h~~~i~~v~~~~~~---~~las~s~dg~i~iwd~~~~~ 432 (564)
. ..-.+..++|+|+. ..|..-+.|.+||+||.....
T Consensus 162 ss~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 162 SSTSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred cCCceeeeeccccCCccCCceEEEEecCcEEEEEecCCcc
Confidence 1 11246678999976 567778889999999986544
No 442
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.81 E-value=2.6 Score=37.09 Aligned_cols=36 Identities=28% Similarity=0.577 Sum_probs=29.6
Q ss_pred cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 008467 443 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 481 (564)
Q Consensus 443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 481 (564)
.+..++|||.|-+ ++...+|++...+|.|.||....
T Consensus 87 ~vv~~aWSP~Gl~---~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLG---PNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCC---CCCceEEEEEcCCCeEEEEecCC
Confidence 6889999998863 44578999999999999997653
No 443
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.21 E-value=35 Score=36.64 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=40.7
Q ss_pred CCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 008467 295 YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 347 (564)
Q Consensus 295 ~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~ 347 (564)
.--.|+|++..|.+...+.-..+++.++.|+.+. .|+....||++.+|++..
T Consensus 62 a~~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 62 ARPYIRIFNISGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred cceeEEEEeccccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch
Confidence 3356899999998877665555588899999765 567778999999999753
No 444
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.80 E-value=2 Score=37.72 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=23.3
Q ss_pred CEEEEEEccCC------CEEEEEEcCCcEEEEE
Q 008467 535 GIFEVCWNKEG------DKIAACFANHTVCVLD 561 (564)
Q Consensus 535 ~i~~~~w~~~g------~~la~~~~~~~v~v~~ 561 (564)
.+..++|||.| ..||+...++.|.||.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~ 119 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYG 119 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEe
Confidence 57899999976 4899999999999984
No 445
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.43 E-value=9.4 Score=38.86 Aligned_cols=70 Identities=16% Similarity=0.293 Sum_probs=49.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeC---------CCCeEEEEEe----------cCCC--EEEEEEccCC---CEEE
Q 008467 494 PVYSLAFSPTGEYLASGSLDKSMHIWSL---------KEGKIVKTYT----------GNGG--IFEVCWNKEG---DKIA 549 (564)
Q Consensus 494 ~i~~~~~spdg~~lasgs~dg~i~iw~~---------~~~~~~~~~~----------~~~~--i~~~~w~~~g---~~la 549 (564)
.|..+..|+.|..+|..|.+|.+.++-. ++|+.+-+.. .... +.-.+|+|+. .+|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 3677889999999999999997666542 3444322211 1222 3457899987 5888
Q ss_pred EEEcCCcEEEEEee
Q 008467 550 ACFANHTVCVLDFR 563 (564)
Q Consensus 550 ~~~~~~~v~v~~~~ 563 (564)
.-..|..++|||+.
T Consensus 185 iL~sdnviRiy~lS 198 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLS 198 (741)
T ss_pred EEecCcEEEEEecC
Confidence 88889999999864
No 446
>PHA02790 Kelch-like protein; Provisional
Probab=88.31 E-value=35 Score=35.68 Aligned_cols=142 Identities=9% Similarity=0.022 Sum_probs=64.2
Q ss_pred CCCEEEEEeCCC-----eEEEEECCCceeEeecCCCCC--EEEEEeCCCCCEEEEeeCC--CcEEEEECCCcceeEEEee
Q 008467 286 EGTLLATGSYDG-----QARIWSTNGDLKCTLSKHKGP--IFSLKWNKKGDYLLTGSCD--KTAIVWDVKTEEWKQQFEF 356 (564)
Q Consensus 286 ~g~~l~sg~~dg-----~i~vw~~~~~~~~~~~~h~~~--V~~l~~~~~~~~l~s~s~D--~~v~iwd~~~~~~~~~~~~ 356 (564)
++.+++.||.++ .+..||.....-..+..-..+ -.++. .-++...+.|+.+ .++..||..+++|...-..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 345667777543 455666544322222111111 01122 1245555666653 4688899888777653322
Q ss_pred cccC-eEEEEcCCCceEEEEeCCC---eEEEEEcCCCcee--eEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008467 357 HSGP-TLDVDWRNNVSFATSSTDN---MIYVCKIGENRPI--KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 430 (564)
Q Consensus 357 ~~~~-~~~~~~~~~~~~~~~~~d~---~i~~~~~~~~~~~--~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~ 430 (564)
.... ...+.-.++..++.|+.++ .+..|+..++.=. ..+.-.......+. -++++.+.|+ .+.+||..+
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~GG---~~e~ydp~~ 424 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVGR---NAEFYCESS 424 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEECC---ceEEecCCC
Confidence 2111 1222334556666666443 3445554433210 00000011111222 2466666663 466788765
Q ss_pred Cee
Q 008467 431 DKY 433 (564)
Q Consensus 431 ~~~ 433 (564)
.+.
T Consensus 425 ~~W 427 (480)
T PHA02790 425 NTW 427 (480)
T ss_pred CcE
Confidence 543
No 447
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.30 E-value=27 Score=34.28 Aligned_cols=142 Identities=22% Similarity=0.338 Sum_probs=78.1
Q ss_pred cceEEEEECCCCCEEEEEeCCCc------EEEEeCCCC----eeee-----ecccccc--------cEEEEEEccCCCCC
Q 008467 400 GEVNCVKWDPTGSLLASCSDDVT------AKIWNMKQD----KYVH-----DLREHSK--------EIYTIRWSPTGSGT 456 (564)
Q Consensus 400 ~~i~~v~~~~~~~~las~s~dg~------i~iwd~~~~----~~~~-----~~~~~~~--------~i~~i~~~p~~~~~ 456 (564)
+.++.+.+.+++..+++.|++|. +..+++... ..+. .++...+ ..-+|++.+++.
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~-- 97 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS-- 97 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC--
Confidence 45678888876667777888887 544444320 0010 1111111 112344433332
Q ss_pred CCCCCcEEEEEEeCC------CeEEEEeCCCCeEEEEEe---------------CCCCCEEEEEEcCCCCEEEEEeC---
Q 008467 457 NNPNQQLILASASFD------STVKLWDVELGKLLYSLN---------------GHREPVYSLAFSPTGEYLASGSL--- 512 (564)
Q Consensus 457 ~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~---------------~h~~~i~~~~~spdg~~lasgs~--- 512 (564)
++++.=.+ ..|+-++.. |+.+..+. .......+|+++|||+.|.++..
T Consensus 98 -------~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l 169 (326)
T PF13449_consen 98 -------FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPL 169 (326)
T ss_pred -------EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccc
Confidence 44444444 567777765 65543331 12346889999999996655432
Q ss_pred --CC-----------cEEEEeCCC-CeEEEEE--e--------cCCCEEEEEEccCCCEEEEE
Q 008467 513 --DK-----------SMHIWSLKE-GKIVKTY--T--------GNGGIFEVCWNKEGDKIAAC 551 (564)
Q Consensus 513 --dg-----------~i~iw~~~~-~~~~~~~--~--------~~~~i~~~~w~~~g~~la~~ 551 (564)
|+ +|..||..+ +...+.| . ...+|.++.+-++++.|+.-
T Consensus 170 ~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 170 KQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred cCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 22 244455554 3333332 2 23568899999999988765
No 448
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.77 E-value=22 Score=38.36 Aligned_cols=110 Identities=10% Similarity=0.159 Sum_probs=72.9
Q ss_pred cCCCceEEEEeCCCeEEEEEcCC-------C-------------ceeeEecCCCcceEEEEEC--CCCCEEEEEeCCCcE
Q 008467 366 WRNNVSFATSSTDNMIYVCKIGE-------N-------------RPIKTFAGHQGEVNCVKWD--PTGSLLASCSDDVTA 423 (564)
Q Consensus 366 ~~~~~~~~~~~~d~~i~~~~~~~-------~-------------~~~~~~~~h~~~i~~v~~~--~~~~~las~s~dg~i 423 (564)
|.+...++.|.+||.|..|.+.. . +|...+. -...+++++++ ...++||.++....|
T Consensus 111 lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~V 189 (717)
T PF08728_consen 111 LGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEV 189 (717)
T ss_pred cCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceE
Confidence 44556788899999999997521 0 1221222 23468889998 888999999999999
Q ss_pred EEEeCCCC--ee-eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 008467 424 KIWNMKQD--KY-VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 479 (564)
Q Consensus 424 ~iwd~~~~--~~-~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 479 (564)
.||-.... +. ...-..|..-|.+|.|-++... +.+...|++++-.|.+-+|++
T Consensus 190 TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d---~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 190 TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLD---PNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEeccccccccccccccccCCCeeEeecCCCC---CccceEEEEEeccCcEEEEEE
Confidence 88865431 11 1111125556888888876532 222347888999999999887
No 449
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=87.20 E-value=8.7 Score=38.94 Aligned_cols=150 Identities=16% Similarity=0.187 Sum_probs=84.2
Q ss_pred CCCCCEEE-EEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEE
Q 008467 408 DPTGSLLA-SCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLL 485 (564)
Q Consensus 408 ~~~~~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~ 485 (564)
..+.++|. .|..-..+.--|+..++.+.+...|... -+.|.|..........+ .|+ |-.+..|.-.|.+. |..+
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eq-tlv-GlS~~svFrIDPR~~gNKi 551 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQ-TLV-GLSDYSVFRIDPRARGNKI 551 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccc-eEE-eecccceEEecccccCCce
Confidence 33455544 4455556666677788888877777654 56677764322222222 243 43455555456553 3222
Q ss_pred EEEeCCCCCEEEEEEcC----CCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467 486 YSLNGHREPVYSLAFSP----TGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVL 560 (564)
Q Consensus 486 ~~~~~h~~~i~~~~~sp----dg~~lasgs~dg~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~ 560 (564)
.... ...-++.-.||. ..-|+|.||..|-|++||.-.-.....+++ ...|-.+.-+.+|++|.+.+.+ .+-+.
T Consensus 552 ~v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~ 629 (776)
T COG5167 552 KVVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLT 629 (776)
T ss_pred eeee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEE
Confidence 2211 111122222332 346899999999999999643222222333 3457888899999977766555 56666
Q ss_pred Eee
Q 008467 561 DFR 563 (564)
Q Consensus 561 ~~~ 563 (564)
|++
T Consensus 630 d~~ 632 (776)
T COG5167 630 DVP 632 (776)
T ss_pred ecc
Confidence 664
No 450
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=86.89 E-value=3.5 Score=25.60 Aligned_cols=31 Identities=29% Similarity=0.354 Sum_probs=19.8
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEe-CC--CcEEEE
Q 008467 489 NGHREPVYSLAFSPTGEYLASGS-LD--KSMHIW 519 (564)
Q Consensus 489 ~~h~~~i~~~~~spdg~~lasgs-~d--g~i~iw 519 (564)
..........+|||||++|+-++ .+ |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 33445678889999999887544 44 555555
No 451
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=86.43 E-value=7.7 Score=37.53 Aligned_cols=67 Identities=18% Similarity=0.312 Sum_probs=50.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCE-----EEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 495 VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGI-----FEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 495 i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i-----~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
|++|...++|.+|+|.-.-..|.+.+.++|+++..+.+. ..- ..++|..+-+.+-.+..++.|.|+|
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFD 218 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEc
Confidence 788988899999999998899999999999999888665 221 2366666666665555556666664
No 452
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=85.85 E-value=8.7 Score=41.33 Aligned_cols=100 Identities=15% Similarity=0.194 Sum_probs=68.3
Q ss_pred EEEEEEeCCCeEEEEeCCC-------C-------------eEEEEEeCCCCCEEEEEEc--CCCCEEEEEeCCCcEEEEe
Q 008467 463 LILASASFDSTVKLWDVEL-------G-------------KLLYSLNGHREPVYSLAFS--PTGEYLASGSLDKSMHIWS 520 (564)
Q Consensus 463 ~~l~s~s~dg~i~iwd~~~-------~-------------~~~~~~~~h~~~i~~~~~s--pdg~~lasgs~dg~i~iw~ 520 (564)
.+|+.|..||.|.+|.++. . ++.+.+. ....+++++++ ...++||+++....|.||-
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA 193 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence 3788899999999996521 0 0112222 23468899998 7788999888888888876
Q ss_pred CCCC--eE--EEEEecCCCEEEEEEccCC---C---EEEEEEcCCcEEEEEee
Q 008467 521 LKEG--KI--VKTYTGNGGIFEVCWNKEG---D---KIAACFANHTVCVLDFR 563 (564)
Q Consensus 521 ~~~~--~~--~~~~~~~~~i~~~~w~~~g---~---~la~~~~~~~v~v~~~~ 563 (564)
.... +. .........|.+|+|-++. . +|++++-.|.+.+|+|+
T Consensus 194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 5431 11 1122334567888886643 2 88899999999999883
No 453
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=84.61 E-value=52 Score=33.86 Aligned_cols=104 Identities=13% Similarity=0.229 Sum_probs=55.4
Q ss_pred CEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE--Ee-----ecccCeEEEEcCCCc--------eEEEEe------
Q 008467 318 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ--FE-----FHSGPTLDVDWRNNV--------SFATSS------ 376 (564)
Q Consensus 318 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~-----~~~~~~~~~~~~~~~--------~~~~~~------ 376 (564)
.-+.|+|.|+|..|++--..|.|++++..++..... +. ...+-.+++.+.++. .+++.+
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~ 110 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDK 110 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCC
Confidence 447899999997666654469999998655432111 11 112345666665442 334321
Q ss_pred ---CCCeEEEEEcCCC-----ceeeEecCC----CcceEEEEECCCCCEEEEEeCCC
Q 008467 377 ---TDNMIYVCKIGEN-----RPIKTFAGH----QGEVNCVKWDPTGSLLASCSDDV 421 (564)
Q Consensus 377 ---~d~~i~~~~~~~~-----~~~~~~~~h----~~~i~~v~~~~~~~~las~s~dg 421 (564)
....|..+.+... .....+.+- ...-..|+|.|||+++++.++.+
T Consensus 111 ~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 111 ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred CccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCC
Confidence 1234555554321 111122211 12234678999999887766654
No 454
>PRK13684 Ycf48-like protein; Provisional
Probab=84.42 E-value=44 Score=32.94 Aligned_cols=173 Identities=9% Similarity=0.050 Sum_probs=88.4
Q ss_pred eCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceee-EecCCCcceEEEEECCCCCE
Q 008467 335 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIK-TFAGHQGEVNCVKWDPTGSL 413 (564)
Q Consensus 335 s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~-~~~~h~~~i~~v~~~~~~~~ 413 (564)
+..|.|..=+-....|........+.+.++...++..++..+..|.++.-....+..-. ...+-...+.++.+.+++++
T Consensus 149 g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~ 228 (334)
T PRK13684 149 TNVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNL 228 (334)
T ss_pred eccceEEEECCCCCCceeCcCCCcceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCE
Confidence 34444433322223344332222345566666666667777777766543111211111 11233456889999999988
Q ss_pred EEEEeCCCcEEEEeCCCCeeeeeccc----ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe
Q 008467 414 LASCSDDVTAKIWNMKQDKYVHDLRE----HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN 489 (564)
Q Consensus 414 las~s~dg~i~iwd~~~~~~~~~~~~----~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 489 (564)
++.+ ..|.+++=....+..-..... -...++++.+.|.+. ++ .++.+|.|. .....|+.-....
T Consensus 229 ~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~---------~~-~~G~~G~v~-~S~d~G~tW~~~~ 296 (334)
T PRK13684 229 WMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE---------IW-AGGGNGTLL-VSKDGGKTWEKDP 296 (334)
T ss_pred EEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC---------EE-EEcCCCeEE-EeCCCCCCCeECC
Confidence 7655 557665322232221111111 123467788877543 33 455667654 3344344322221
Q ss_pred ---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467 490 ---GHREPVYSLAFSPTGEYLASGSLDKSMHIWS 520 (564)
Q Consensus 490 ---~h~~~i~~~~~spdg~~lasgs~dg~i~iw~ 520 (564)
.-....+.+.|..+++.+++ +..|.|.-|+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~ 329 (334)
T PRK13684 297 VGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYV 329 (334)
T ss_pred cCCCCCcceEEEEEeCCCceEEE-CCCceEEEec
Confidence 22235788888877777664 5567776664
No 455
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=84.04 E-value=0.57 Score=42.21 Aligned_cols=38 Identities=37% Similarity=0.539 Sum_probs=34.8
Q ss_pred CcCccchhhhhHHHHHhcCCceeeeccccccCCccCCC
Q 008467 3 SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNI 40 (564)
Q Consensus 3 ~i~s~evn~Li~ryl~E~g~~~sa~~~~~E~~~~~~~~ 40 (564)
++..+++|.||--||--.||..+|-+|++|++|..+.+
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~ 60 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSI 60 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccC
Confidence 57889999999999999999999999999999998543
No 456
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=83.59 E-value=68 Score=34.46 Aligned_cols=72 Identities=19% Similarity=0.329 Sum_probs=44.0
Q ss_pred eEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCe
Q 008467 219 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ 298 (564)
Q Consensus 219 V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~ 298 (564)
++++.-+|.|..+++|+.||.|++|++....... +. ....+-..+.|...| |+++..|..
T Consensus 17 ~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk------i~------------~~~~p~~nlv~tnhg--l~~~tsdrr 76 (1636)
T KOG3616|consen 17 TTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK------IC------------EEAKPKENLVFTNHG--LVTATSDRR 76 (1636)
T ss_pred eeeeeecCCCceEEEEecCCcEEEEeecccchhh------hh------------hhcCCccceeeeccc--eEEEeccch
Confidence 5567778999999999999999999975432100 00 001112223333333 556667777
Q ss_pred EEEEECCCceeE
Q 008467 299 ARIWSTNGDLKC 310 (564)
Q Consensus 299 i~vw~~~~~~~~ 310 (564)
+.-|..+|....
T Consensus 77 ~la~~~dgvvqq 88 (1636)
T KOG3616|consen 77 ALAWKEDGVVQQ 88 (1636)
T ss_pred hheeeccCcchh
Confidence 778877664433
No 457
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.54 E-value=33 Score=30.77 Aligned_cols=172 Identities=12% Similarity=0.171 Sum_probs=78.0
Q ss_pred CCCEEEEeeCC--CcEEEEECCCcceeEEEeecccCeE--EEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcce
Q 008467 327 KGDYLLTGSCD--KTAIVWDVKTEEWKQQFEFHSGPTL--DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV 402 (564)
Q Consensus 327 ~~~~l~s~s~D--~~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i 402 (564)
+|.++.+.+.- ..|++||+.+++.+..-......++ .+.-..+..+...=.++.-+.+|..+-+.+..+. ..++=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 34555555543 3699999998876554332211110 0111122223333345555566655544444332 23334
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecc--ccccc---EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEE
Q 008467 403 NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR--EHSKE---IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 477 (564)
Q Consensus 403 ~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~--~~~~~---i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iw 477 (564)
..++. |++-|+.++...+++.-|.++-....++. ....+ +..+.|- +| .+.|-.=.+..|-.-
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG---------~lyANVw~t~~I~rI 201 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DG---------ELYANVWQTTRIARI 201 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-cc---------EEEEeeeeecceEEE
Confidence 44443 34445555444455555544322221111 01111 1122221 11 122323333444445
Q ss_pred eCCCCeEEEEEe------------CCCCCEEEEEEcCCC-CEEEEEe
Q 008467 478 DVELGKLLYSLN------------GHREPVYSLAFSPTG-EYLASGS 511 (564)
Q Consensus 478 d~~~~~~~~~~~------------~h~~~i~~~~~spdg-~~lasgs 511 (564)
+..+|+.+..+. .|..-.+.|++.|++ +++++|-
T Consensus 202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 666676655432 234456789999987 5666653
No 458
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=83.48 E-value=15 Score=34.22 Aligned_cols=124 Identities=20% Similarity=0.329 Sum_probs=67.1
Q ss_pred EEEECCCCCEEEEEeC-C--CcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC
Q 008467 404 CVKWDPTGSLLASCSD-D--VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 480 (564)
Q Consensus 404 ~v~~~~~~~~las~s~-d--g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 480 (564)
+-.+-+||++|.+|+. + ..+|+++...................-+|-|.. ..-++++.+++.|+...+..+|.-.
T Consensus 71 gg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~--~~L~DG~vlIvGG~~~~t~E~~P~~ 148 (243)
T PF07250_consen 71 GGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTA--TTLPDGRVLIVGGSNNPTYEFWPPK 148 (243)
T ss_pred CcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccc--eECCCCCEEEEeCcCCCcccccCCc
Confidence 3456789999999886 3 347777754311011111111112333555532 2234555666666666667777653
Q ss_pred C-CeEEEE--EeCC---C---CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q 008467 481 L-GKLLYS--LNGH---R---EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT 531 (564)
Q Consensus 481 ~-~~~~~~--~~~h---~---~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~ 531 (564)
. ...... +... . .---.+...|||+.++.+..+. .|||..+.+.++.+.
T Consensus 149 ~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 149 GPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLP 206 (243)
T ss_pred cCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCC
Confidence 2 111111 1110 0 1112456789999999888764 467888887776654
No 459
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=83.35 E-value=28 Score=37.50 Aligned_cols=217 Identities=14% Similarity=0.285 Sum_probs=99.5
Q ss_pred CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecc------cCeEEEEcCCC-ceEEEEeCCCeEEEEEc
Q 008467 314 KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS------GPTLDVDWRNN-VSFATSSTDNMIYVCKI 386 (564)
Q Consensus 314 ~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~d~~i~~~~~ 386 (564)
.-.+.|...+||.+.+.++....+.+|.+.+-.- ..+..+.... +.-+.+.|... ..|-.-+....+
T Consensus 110 ~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~f-d~ise~~L~~~dl~ef~khi~VgWgkketqfrgk~~raql----- 183 (1243)
T COG5290 110 KVSNGIVAASWSADEKTWCVVTSTREILLFDKYF-DPISEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARAQL----- 183 (1243)
T ss_pred cccCceEEEeeccCCceEEEEEcCceEEEEeccc-cccchhhcchhHHHHhccceEeeecccchhccccchhhhc-----
Confidence 3456788889999999888777888888886321 1111111111 11233444311 111100000000
Q ss_pred CCCceeeEecCCCcce-------EEEEECCCCCEEEEEeCC----CcEEEEeCCCCeeeeecc-cccccEEEEEEccCCC
Q 008467 387 GENRPIKTFAGHQGEV-------NCVKWDPTGSLLASCSDD----VTAKIWNMKQDKYVHDLR-EHSKEIYTIRWSPTGS 454 (564)
Q Consensus 387 ~~~~~~~~~~~h~~~i-------~~v~~~~~~~~las~s~d----g~i~iwd~~~~~~~~~~~-~~~~~i~~i~~~p~~~ 454 (564)
+ .|...+.-..+.+ .-+.|..|..+.+.+... ..+|+|.-. +. +.... ...+.-..+.|.|.|+
T Consensus 184 r--dptmp~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysre-g~-lds~sep~~g~e~~LSWkpqgS 259 (1243)
T COG5290 184 R--DPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSRE-GQ-LDSASEPVTGMEHQLSWKPQGS 259 (1243)
T ss_pred c--CCCCcccccccceeEeeCCceEEEEccCcceeeecchhcccccceeeeccc-cc-cccccCCcccchhccccccCCc
Confidence 0 0000000011111 135666666666555432 235665421 11 11111 1122234578999887
Q ss_pred CCCCCCCcEEEEEEeCCC-----eEEEEeCC---CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 008467 455 GTNNPNQQLILASASFDS-----TVKLWDVE---LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 526 (564)
Q Consensus 455 ~~~~~~~~~~l~s~s~dg-----~i~iwd~~---~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~ 526 (564)
.+++-..|| .|.++... -|..-... +...-+..++|+-....+|.+ ..+.|++|-.++..-
T Consensus 260 ---------~~ati~td~~~~S~~ViFfErNGLrHGef~lr~-~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyhW 328 (1243)
T COG5290 260 ---------KYATIGTDGCSTSESVIFFERNGLRHGEFDLRV-GCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYHW 328 (1243)
T ss_pred ---------eeeeeccCCCCCcceEEEEccCCcccCCccccC-CchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceEE
Confidence 566655554 24444321 11111111 122335566777666666544 345799998876542
Q ss_pred -EEEEecCCCEEEEEEccCCC-EEEEE
Q 008467 527 -VKTYTGNGGIFEVCWNKEGD-KIAAC 551 (564)
Q Consensus 527 -~~~~~~~~~i~~~~w~~~g~-~la~~ 551 (564)
++.-..-.++.-+.|+|.-+ .|...
T Consensus 329 YLK~e~~ip~~s~vkwhpe~~nTl~f~ 355 (1243)
T COG5290 329 YLKVERQIPGISYVKWHPEEKNTLLFR 355 (1243)
T ss_pred EEEEeecCCCcceeeeccccCcEEEEe
Confidence 11111223466688999653 34333
No 460
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.16 E-value=12 Score=34.30 Aligned_cols=70 Identities=16% Similarity=0.207 Sum_probs=51.1
Q ss_pred ECCCCCEEEEEeCCCeEEEEECCCceeE--------eec-------CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 008467 283 WNGEGTLLATGSYDGQARIWSTNGDLKC--------TLS-------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 347 (564)
Q Consensus 283 ~s~~g~~l~sg~~dg~i~vw~~~~~~~~--------~~~-------~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~ 347 (564)
....+.+|+.-+.+|.+++||....... .+. .....|..+..+.+|.-+++-+ +|....|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3456788999999999999997643211 122 3556788899998888777665 57889999887
Q ss_pred cceeEE
Q 008467 348 EEWKQQ 353 (564)
Q Consensus 348 ~~~~~~ 353 (564)
+.|...
T Consensus 97 ~~W~~v 102 (219)
T PF07569_consen 97 GCWIRV 102 (219)
T ss_pred ceeEEe
Confidence 777654
No 461
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=82.64 E-value=1e+02 Score=35.70 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=17.9
Q ss_pred CEEEEEEccCCCEEEEEEcCCcE
Q 008467 535 GIFEVCWNKEGDKIAACFANHTV 557 (564)
Q Consensus 535 ~i~~~~w~~~g~~la~~~~~~~v 557 (564)
.+.++|-+|||....+-.+|..|
T Consensus 663 sp~alaVsPdg~v~IAD~gN~rI 685 (1899)
T KOG4659|consen 663 SPYALAVSPDGDVIIADSGNSRI 685 (1899)
T ss_pred CcceEEECCCCcEEEecCCchhh
Confidence 46789999999988877666554
No 462
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=82.40 E-value=8.9 Score=23.97 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=26.6
Q ss_pred cEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEE
Q 008467 462 QLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF 500 (564)
Q Consensus 462 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~ 500 (564)
+.++++.-.+++|.++|..+++.+..+.....| ..++|
T Consensus 4 ~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P-~~i~~ 41 (42)
T TIGR02276 4 TKLYVTNSGSNTVSVIDTATNKVIATIPVGGYP-FGVAV 41 (42)
T ss_pred CEEEEEeCCCCEEEEEECCCCeEEEEEECCCCC-ceEEe
Confidence 446666767899999999988888777653333 45554
No 463
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=82.15 E-value=4.7 Score=24.99 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=18.4
Q ss_pred CCEEEEEEccCCCEEEEEEcC---CcEEEE
Q 008467 534 GGIFEVCWNKEGDKIAACFAN---HTVCVL 560 (564)
Q Consensus 534 ~~i~~~~w~~~g~~la~~~~~---~~v~v~ 560 (564)
+.....+|+|||++|+.++.. |...||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 446788999999999977653 444443
No 464
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=81.90 E-value=7 Score=41.67 Aligned_cols=72 Identities=19% Similarity=0.210 Sum_probs=43.7
Q ss_pred CCCCEEEEEeCCCeEEEEECCC-----cee-Eee----------c-----------CCCCCEEEEEeCC----CCCEEEE
Q 008467 285 GEGTLLATGSYDGQARIWSTNG-----DLK-CTL----------S-----------KHKGPIFSLKWNK----KGDYLLT 333 (564)
Q Consensus 285 ~~g~~l~sg~~dg~i~vw~~~~-----~~~-~~~----------~-----------~h~~~V~~l~~~~----~~~~l~s 333 (564)
++...++.+..||.+....... ... ... . ...+.+.++..+. +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4666778888888777665321 111 100 0 0123455666666 6789999
Q ss_pred eeCCCcEEEEECCCcceeEEEee
Q 008467 334 GSCDKTAIVWDVKTEEWKQQFEF 356 (564)
Q Consensus 334 ~s~D~~v~iwd~~~~~~~~~~~~ 356 (564)
.+.|+++|+||+.++.++.....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEET
T ss_pred EeCCCeEEEEECCCCeEEEEecc
Confidence 99999999999999998666543
No 465
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=81.72 E-value=63 Score=32.72 Aligned_cols=220 Identities=11% Similarity=0.140 Sum_probs=97.8
Q ss_pred CCCEEEEee-CCCcEEEEECCCc----ceeEEEee---cc----cCeEEEEcCC-CceEEEE--e----CCCeEEEEEcC
Q 008467 327 KGDYLLTGS-CDKTAIVWDVKTE----EWKQQFEF---HS----GPTLDVDWRN-NVSFATS--S----TDNMIYVCKIG 387 (564)
Q Consensus 327 ~~~~l~s~s-~D~~v~iwd~~~~----~~~~~~~~---~~----~~~~~~~~~~-~~~~~~~--~----~d~~i~~~~~~ 387 (564)
..++|+..+ ..+.|.|.|+.+. ++.+.++. .. .....+.... ...++++ . ..+.+.+.+-.
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 446666666 5678999988643 23333331 11 0111122222 2233332 1 12345555554
Q ss_pred CCceeeEecCCC---cceEEEEECCCCCEEEEEeC--------------------CCcEEEEeCCCCeeeeeccccc--c
Q 008467 388 ENRPIKTFAGHQ---GEVNCVKWDPTGSLLASCSD--------------------DVTAKIWNMKQDKYVHDLREHS--K 442 (564)
Q Consensus 388 ~~~~~~~~~~h~---~~i~~v~~~~~~~~las~s~--------------------dg~i~iwd~~~~~~~~~~~~~~--~ 442 (564)
+......+.... ..--.+-|.|..+.++|... -.++.+||+.+.+.++++.--. .
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 444444333211 12234566777777776542 3479999999999988775432 3
Q ss_pred cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC-CCCe----EEEEEeC-----C------------CCCEEEEEE
Q 008467 443 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV-ELGK----LLYSLNG-----H------------REPVYSLAF 500 (564)
Q Consensus 443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~-~~~~----~~~~~~~-----h------------~~~i~~~~~ 500 (564)
....|+|..+. +...-++.+...++|..|-- +.++ .+..+.. - ..-|+.|..
T Consensus 246 ~pLEvRflH~P------~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i 319 (461)
T PF05694_consen 246 MPLEVRFLHDP------DANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI 319 (461)
T ss_dssp EEEEEEE-SST------T--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred ceEEEEecCCC------CccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence 45677776543 23334555555566655543 3332 2222211 1 123799999
Q ss_pred cCCCCEEEEEe-CCCcEEEEeCCCC---eEEEEEe-c----------------CCCEEEEEEccCCCEEEEEE
Q 008467 501 SPTGEYLASGS-LDKSMHIWSLKEG---KIVKTYT-G----------------NGGIFEVCWNKEGDKIAACF 552 (564)
Q Consensus 501 spdg~~lasgs-~dg~i~iw~~~~~---~~~~~~~-~----------------~~~i~~~~w~~~g~~la~~~ 552 (564)
|.|.++|.... .+|.|+-||+.+- +++.... + .++..=|..|.||++|-+..
T Consensus 320 SlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 320 SLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp -TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred ccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 99999997665 5899999999764 3333321 1 12234577888999887763
No 466
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.52 E-value=65 Score=36.98 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=25.8
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEECCCc
Q 008467 277 DVTTLDWNGEGTLLATGSYDGQARIWSTNGD 307 (564)
Q Consensus 277 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~ 307 (564)
....++|+|.-.++|.|..+|.|+++...+-
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~v 67 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGV 67 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccce
Confidence 3456789999999999999999999976543
No 467
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=79.85 E-value=19 Score=27.47 Aligned_cols=44 Identities=7% Similarity=-0.074 Sum_probs=31.2
Q ss_pred EeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEc
Q 008467 510 GSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFA 553 (564)
Q Consensus 510 gs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~ 553 (564)
+..+|++.-||..+++......+-.-.+.++.++|++.|.++-.
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec
Confidence 34568899999999886555555456789999999998888743
No 468
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=79.79 E-value=78 Score=32.60 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=37.7
Q ss_pred CcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe--eeeecc-----cccccEEEEEEccCC
Q 008467 399 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK--YVHDLR-----EHSKEIYTIRWSPTG 453 (564)
Q Consensus 399 ~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~--~~~~~~-----~~~~~i~~i~~~p~~ 453 (564)
-...+.++|.|||++|++--..|.|++++..+.. .+..+. .-......|+++|+-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 3456789999999988877667999999865432 222121 124567889999874
No 469
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=78.28 E-value=83 Score=32.86 Aligned_cols=152 Identities=17% Similarity=0.264 Sum_probs=66.1
Q ss_pred CCCEEEEE---eCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccC--
Q 008467 286 EGTLLATG---SYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP-- 360 (564)
Q Consensus 286 ~g~~l~sg---~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~-- 360 (564)
+|-+++++ ...+...+.|.+|.++..+.........+...++|.+++..+ ..+..+|+. |+.+..+....+.
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~ 190 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYD 190 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-
T ss_pred CcEEEEeCCCCCCCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccc
Confidence 34455555 345667777777776655543222221266678887776544 677777764 3444333332211
Q ss_pred -eEEEEcCCC-ceEEEE-----------------------eCCCeEEEEEcCCCc-eeeE----------ec---CCC--
Q 008467 361 -TLDVDWRNN-VSFATS-----------------------STDNMIYVCKIGENR-PIKT----------FA---GHQ-- 399 (564)
Q Consensus 361 -~~~~~~~~~-~~~~~~-----------------------~~d~~i~~~~~~~~~-~~~~----------~~---~h~-- 399 (564)
-.++...++ ..++.+ .....++.|+...-- +.+. .. +..
T Consensus 191 ~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW 270 (477)
T PF05935_consen 191 FHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDW 270 (477)
T ss_dssp B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS
T ss_pred cccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCc
Confidence 122222222 122211 222334555543311 1111 00 001
Q ss_pred cceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeeeeecccc
Q 008467 400 GEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREH 440 (564)
Q Consensus 400 ~~i~~v~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~~~ 440 (564)
-.++++.+.+ ++.+++|+-.-..|...|.++++....+-.+
T Consensus 271 ~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 271 LHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp --EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred cccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 1489999998 5666666655557888887777665554433
No 470
>PRK13613 lipoprotein LpqB; Provisional
Probab=77.75 E-value=1.1e+02 Score=33.01 Aligned_cols=151 Identities=13% Similarity=0.111 Sum_probs=76.0
Q ss_pred eeeEecCCCc-ceEEEEECCCCCEEEEEeCCC-cEEEEeCCCCee----e-eecccccccEEEEEEccCCCCCCCCCCcE
Q 008467 391 PIKTFAGHQG-EVNCVKWDPTGSLLASCSDDV-TAKIWNMKQDKY----V-HDLREHSKEIYTIRWSPTGSGTNNPNQQL 463 (564)
Q Consensus 391 ~~~~~~~h~~-~i~~v~~~~~~~~las~s~dg-~i~iwd~~~~~~----~-~~~~~~~~~i~~i~~~p~~~~~~~~~~~~ 463 (564)
++.-..++.. .+.+++.++++..+|..+.++ .+.+..+..+.. . ..+. ...++.-.|.+.+. .
T Consensus 353 pv~g~~g~~~~~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~~g~--------v 422 (599)
T PRK13613 353 PVPGALGSGRVPLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDGRGD--------L 422 (599)
T ss_pred cCCCccCCCCCCccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcCCCC--------E
Confidence 3333334444 678899999999988777666 344443322221 0 1111 12233334444332 1
Q ss_pred EEEEEeCCC--eEEEEeCCCCeEEE-EEeCCC-CCEEEEEEcCCCCEEEEEeC---CCcEEEEeCC---CCe-EEEEE--
Q 008467 464 ILASASFDS--TVKLWDVELGKLLY-SLNGHR-EPVYSLAFSPTGEYLASGSL---DKSMHIWSLK---EGK-IVKTY-- 530 (564)
Q Consensus 464 ~l~s~s~dg--~i~iwd~~~~~~~~-~~~~h~-~~i~~~~~spdg~~lasgs~---dg~i~iw~~~---~~~-~~~~~-- 530 (564)
+.+-++.++ .+++..- .|+... ...... ..|..+..|+||..+|.-.. .++|.|=-+. .|. .+...
T Consensus 423 Wtvd~~~~~~~vl~v~~~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~ 501 (599)
T PRK13613 423 WVVDRDPADPRLLWLLQG-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRS 501 (599)
T ss_pred EEecCCCCCceEEEEEcC-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEE
Confidence 222111122 2444432 233211 011122 37999999999987765432 3555554432 332 11111
Q ss_pred --ecCCCEEEEEEccCCCEEEEEE
Q 008467 531 --TGNGGIFEVCWNKEGDKIAACF 552 (564)
Q Consensus 531 --~~~~~i~~~~w~~~g~~la~~~ 552 (564)
.....+.+++|..++..++.+.
T Consensus 502 l~~~l~~v~~~~W~~~~sL~Vlg~ 525 (599)
T PRK13613 502 LAPELEDVTDMSWAGDSQLVVLGR 525 (599)
T ss_pred eccCCCccceeEEcCCCEEEEEec
Confidence 1234588999999999877663
No 471
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=76.43 E-value=12 Score=40.00 Aligned_cols=37 Identities=35% Similarity=0.516 Sum_probs=29.4
Q ss_pred CEEEEEEcC----CCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 008467 494 PVYSLAFSP----TGEYLASGSLDKSMHIWSLKEGKIVKTY 530 (564)
Q Consensus 494 ~i~~~~~sp----dg~~lasgs~dg~i~iw~~~~~~~~~~~ 530 (564)
.+.+++.++ +..+|++.+.|+++++||+.+++++.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 456667777 7789999999999999999999997665
No 472
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=76.42 E-value=92 Score=31.57 Aligned_cols=143 Identities=13% Similarity=0.150 Sum_probs=79.3
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 008467 402 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 481 (564)
Q Consensus 402 i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 481 (564)
...+..++++.+++.+..-..++-||--.......-......++.+.|.+++. ++ ..+..|.+. |....
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~---------l~-l~g~~G~l~-~S~d~ 309 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGG---------LW-LLTRGGGLY-VSKGT 309 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCC---------EE-EEeCCceEE-EecCC
Confidence 44556678888776665544444455322111111122345678888887764 33 344566654 34444
Q ss_pred Ce-----EEEEEeC--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe--c--CCCEEEEEEccCCCEEEE
Q 008467 482 GK-----LLYSLNG--HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--G--NGGIFEVCWNKEGDKIAA 550 (564)
Q Consensus 482 ~~-----~~~~~~~--h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~--~--~~~i~~~~w~~~g~~la~ 550 (564)
++ ....+.. -...++++.|.+++..+++| ..|.+... ...|+.-.... . ...++.+.|.++++-.++
T Consensus 310 G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~ 387 (398)
T PLN00033 310 GLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL 387 (398)
T ss_pred CCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEE
Confidence 43 2222221 12358999999888876655 56755544 34444322211 1 345889999888887777
Q ss_pred EEcCCcEE
Q 008467 551 CFANHTVC 558 (564)
Q Consensus 551 ~~~~~~v~ 558 (564)
| .+|.|.
T Consensus 388 G-~~G~il 394 (398)
T PLN00033 388 G-NDGVLL 394 (398)
T ss_pred e-CCcEEE
Confidence 7 566554
No 473
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=75.62 E-value=77 Score=30.31 Aligned_cols=114 Identities=11% Similarity=0.209 Sum_probs=67.8
Q ss_pred CcEEEEECCCcceeEEEeecccCeEEEEcCCCceE-EEEe------CCCeEEEEEcCCCceeeEecCC-----CcceEEE
Q 008467 338 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF-ATSS------TDNMIYVCKIGENRPIKTFAGH-----QGEVNCV 405 (564)
Q Consensus 338 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~d~~i~~~~~~~~~~~~~~~~h-----~~~i~~v 405 (564)
..|++||..+.+|...-..-.+.|.++.|.++..+ +.+. ....+..|+..... -..+.+- .++|+.+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEEE
Confidence 46999999998887766566678899999755444 4332 24456677776543 2223331 3567777
Q ss_pred EEC-CCC-CEEEEEe-CCC--cEEEEeCCCCeeeee-cccccccEEEEEEccC
Q 008467 406 KWD-PTG-SLLASCS-DDV--TAKIWNMKQDKYVHD-LREHSKEIYTIRWSPT 452 (564)
Q Consensus 406 ~~~-~~~-~~las~s-~dg--~i~iwd~~~~~~~~~-~~~~~~~i~~i~~~p~ 452 (564)
.+. .|+ ++.+.|. .++ .|..||-.+...+.. .......|..+.+-|.
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLPL 147 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEec
Confidence 663 233 3444444 333 466777666655544 3333556777777665
No 474
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=75.54 E-value=0.45 Score=47.45 Aligned_cols=143 Identities=20% Similarity=0.338 Sum_probs=93.9
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCcceeEEEeecc
Q 008467 280 TLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHS 358 (564)
Q Consensus 280 ~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~ 358 (564)
...|-+.+.-++.++.+-.+..||..++...... -++....++|..++..++ .+-..+.+.+||+.+.... +++...
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qLE~gg 116 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QLESGG 116 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HHhccC
Confidence 4467787777888888889999997776554443 345566788998887654 5566789999998764322 222211
Q ss_pred cCeE-EEEcCCCce-EEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEE
Q 008467 359 GPTL-DVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 425 (564)
Q Consensus 359 ~~~~-~~~~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~i 425 (564)
.... -..|..... .+.+...+.+.+|..+..+.+...-.|...+++++|.+.+. .+.++.|..+.+
T Consensus 117 ~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v 184 (615)
T KOG2247|consen 117 TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSV 184 (615)
T ss_pred cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHHHH
Confidence 1111 134544332 34445677889998887776655544999999999998754 567777765543
No 475
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=74.45 E-value=83 Score=34.15 Aligned_cols=150 Identities=24% Similarity=0.343 Sum_probs=80.1
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCCc--EEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCe-
Q 008467 397 GHQGEVNCVKWDPTGSLLASCSDDVT--AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST- 473 (564)
Q Consensus 397 ~h~~~i~~v~~~~~~~~las~s~dg~--i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~- 473 (564)
.+...+..+.|+|+|..++..+.++. ..+|-+.... .+..+...+....|+|.+....... .......|+.
T Consensus 57 ~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~~~~---~~~~~~~~~~~ 130 (620)
T COG1506 57 TFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIAFLT---AEGASKRDGGD 130 (620)
T ss_pred ccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC---ceeeeecccccceeCCCCCeEEEEe---cccccccCCce
Confidence 35566778899999999988774433 3444432221 1223444566677877765211000 0000111221
Q ss_pred ------EEEEeCCCC-e-----------EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCc-------EEEEeCCCCeEEE
Q 008467 474 ------VKLWDVELG-K-----------LLYSLNGHREPVYSLAFSPTGEYLASGSLDKS-------MHIWSLKEGKIVK 528 (564)
Q Consensus 474 ------i~iwd~~~~-~-----------~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~-------i~iw~~~~~~~~~ 528 (564)
+.+|....+ . ...........+...++++++..++....+.. ..++...++.+..
T Consensus 131 ~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (620)
T COG1506 131 HLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELES 210 (620)
T ss_pred eeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceEE
Confidence 223332222 1 11122223456777777777787776654432 3344334666666
Q ss_pred EEecCCCEEEEEEccCCCEEEEEE
Q 008467 529 TYTGNGGIFEVCWNKEGDKIAACF 552 (564)
Q Consensus 529 ~~~~~~~i~~~~w~~~g~~la~~~ 552 (564)
...+...+..+.|.++|+.++.-.
T Consensus 211 ~~~~~~~~~~~~~~~~gk~~~~~~ 234 (620)
T COG1506 211 LTPGEGSISKLAFDADGKSIALLG 234 (620)
T ss_pred EcCCCceeeeeeeCCCCCeeEEec
Confidence 666666788999999999666543
No 476
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=74.44 E-value=7.7 Score=22.79 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=20.7
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEE
Q 008467 506 YLASGSLDKSMHIWSLKEGKIVKTY 530 (564)
Q Consensus 506 ~lasgs~dg~i~iw~~~~~~~~~~~ 530 (564)
.+..++.+|.+..+|.++|+.+..+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5677888999999999999887653
No 477
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.32 E-value=48 Score=38.08 Aligned_cols=144 Identities=17% Similarity=0.272 Sum_probs=88.1
Q ss_pred EEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC----CeE-----EE
Q 008467 416 SCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----GKL-----LY 486 (564)
Q Consensus 416 s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----~~~-----~~ 486 (564)
--+-|..+.+|+..++.....+.+-...|..+..-....+.+.|.-+++|+.+. --.|.|+-+.. +.. .+
T Consensus 94 WiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~~~~~~~~~~f~~~~ 172 (1311)
T KOG1900|consen 94 WITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSFDEFTGELSIFNTSF 172 (1311)
T ss_pred EEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEeccccCcccccccce
Confidence 445688999999999777777777777777776554445555555444444433 23455553321 111 12
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC----CC---e-E-------------E----EEE-ecCCCEEEEE
Q 008467 487 SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK----EG---K-I-------------V----KTY-TGNGGIFEVC 540 (564)
Q Consensus 487 ~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~----~~---~-~-------------~----~~~-~~~~~i~~~~ 540 (564)
++......|++|....+|+.+.+|-.| .+|.+. +| + + + +.. ....+|..++
T Consensus 173 ~i~~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 173 KISVDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT 249 (1311)
T ss_pred eeecCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence 223334568999988999988876544 345432 11 1 1 0 111 1134678888
Q ss_pred EccCCCEEEEEEcCCcEEEEEee
Q 008467 541 WNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 541 w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
.+..-+.|-+=+..|.|.+||+-
T Consensus 250 ID~SR~IlY~lsek~~v~~Y~i~ 272 (1311)
T KOG1900|consen 250 IDNSRNILYVLSEKGTVSAYDIG 272 (1311)
T ss_pred eccccceeeeeccCceEEEEEcc
Confidence 88877777777788889999863
No 478
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=71.77 E-value=28 Score=34.94 Aligned_cols=156 Identities=14% Similarity=0.091 Sum_probs=88.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEe---ecCCCC----CEE-EEEeCCCCCEEEEeeCCCcEEEE-EC
Q 008467 275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCT---LSKHKG----PIF-SLKWNKKGDYLLTGSCDKTAIVW-DV 345 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~---~~~h~~----~V~-~l~~~~~~~~l~s~s~D~~v~iw-d~ 345 (564)
..+|..+-..|||+.+..-+. .++.|++...+.... .....+ .|+ .+..-..|.-++.++.||-|..| |+
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeee
Confidence 345777788899998877665 677777754432211 111111 111 12223356678999999999999 55
Q ss_pred CCcc-----eeEEEeecccCeEEEEcC-CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC
Q 008467 346 KTEE-----WKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 419 (564)
Q Consensus 346 ~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~ 419 (564)
+.+. .++.+.....++.-+... +...|++-...|++.++.....+++..-.. -..+.-+++||.+.++++- +
T Consensus 299 r~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~-~~~~~~~~~Sp~~~~Ll~e-~ 376 (733)
T COG4590 299 RRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA-YQAPQLVAMSPNQAYLLSE-D 376 (733)
T ss_pred ecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh-hcCcceeeeCcccchheee-c
Confidence 4322 112222222223222222 334577777777776665544444322111 2245568899999988654 4
Q ss_pred CCcEEEEeCCCCee
Q 008467 420 DVTAKIWNMKQDKY 433 (564)
Q Consensus 420 dg~i~iwd~~~~~~ 433 (564)
.|.|+++.+.+..+
T Consensus 377 ~gki~~~~l~Nr~P 390 (733)
T COG4590 377 QGKIRLAQLENRNP 390 (733)
T ss_pred CCceEEEEecCCCC
Confidence 57899988776544
No 479
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=71.67 E-value=1.8e+02 Score=32.65 Aligned_cols=28 Identities=14% Similarity=0.312 Sum_probs=23.7
Q ss_pred ceEEEEECCC-CCEEEEEeCCCcEEEEeC
Q 008467 401 EVNCVKWDPT-GSLLASCSDDVTAKIWNM 428 (564)
Q Consensus 401 ~i~~v~~~~~-~~~las~s~dg~i~iwd~ 428 (564)
+...++|+|. .+.||.....|...||++
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDI 175 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEe
Confidence 4567899984 467999999999999998
No 480
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=71.49 E-value=8.8 Score=40.69 Aligned_cols=77 Identities=19% Similarity=0.352 Sum_probs=49.4
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEe
Q 008467 276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE 355 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 355 (564)
.-++++.-+|.|+.++++.+||.|++++........+.....|-..+.|...| |+++.+|+.+.-|. +.|-+.++|.
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~-~dgvvqqqfd 91 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWK-EDGVVQQQFD 91 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheee-ccCcchhhcc
Confidence 34777888899999999999999999986543222222222333444454333 77777888888885 3444444443
No 481
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=71.17 E-value=1.2e+02 Score=30.67 Aligned_cols=107 Identities=11% Similarity=0.061 Sum_probs=61.9
Q ss_pred CcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-----eeeeccc--ccccEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008467 399 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK-----YVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILASASFD 471 (564)
Q Consensus 399 ~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~-----~~~~~~~--~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d 471 (564)
...+..+.|.+++.+++.+ .+|.+. |....+. ....+.. -...++.+.|.+++. +..++..
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~----------~~a~G~~ 347 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE----------AWAAGGS 347 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCc----------EEEEECC
Confidence 3467889999999987655 556543 3333332 1122111 123478888877653 4455667
Q ss_pred CeEEEEeCCCCeEEEEE---eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008467 472 STVKLWDVELGKLLYSL---NGHREPVYSLAFSPTGEYLASGSLDKSMHIW 519 (564)
Q Consensus 472 g~i~iwd~~~~~~~~~~---~~h~~~i~~~~~spdg~~lasgs~dg~i~iw 519 (564)
|.+.... ..|+.-... ..-..+.+.+.|.++++.+++| .+|.|.-|
T Consensus 348 G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 348 GILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 8776653 334432222 2234568899998887777764 56766544
No 482
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=70.61 E-value=11 Score=23.28 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=23.0
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEEecC
Q 008467 507 LASGSLDKSMHIWSLKEGKIVKTYTGN 533 (564)
Q Consensus 507 lasgs~dg~i~iw~~~~~~~~~~~~~~ 533 (564)
+..++.||.|.-.|.++|+++..+...
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 455699999999999999999988754
No 483
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=70.32 E-value=1e+02 Score=29.54 Aligned_cols=227 Identities=16% Similarity=0.211 Sum_probs=118.5
Q ss_pred eEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC----------
Q 008467 219 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT---------- 288 (564)
Q Consensus 219 V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~---------- 288 (564)
-..++++|.+.+.++...-++..+||.......... .+ +................|.+.|+....
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~--~~---L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~ 99 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQ--DP---LVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITG 99 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCc--cc---eEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccc
Confidence 357999999999998888899999997632211111 01 111111000001123466666764332
Q ss_pred --EEEEEeCCCeEEEEECCCcee------EeecC-CCCCEE-EEEeC--CCCCEEEEee-CCCcEEEEECCCcceeE--E
Q 008467 289 --LLATGSYDGQARIWSTNGDLK------CTLSK-HKGPIF-SLKWN--KKGDYLLTGS-CDKTAIVWDVKTEEWKQ--Q 353 (564)
Q Consensus 289 --~l~sg~~dg~i~vw~~~~~~~------~~~~~-h~~~V~-~l~~~--~~~~~l~s~s-~D~~v~iwd~~~~~~~~--~ 353 (564)
.++.++.||+|.-|...-... ..+.. ..+.|+ .+++. ..+++|+.+. ..++|.++|-.-..... .
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~ 179 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGS 179 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCC
Confidence 367789999999998532211 12222 234553 34444 3356666554 45788888743221110 0
Q ss_pred Eeeccc----CeEEEEcCCCceEEE-------------EeCCCeEEEEEcCCCceeeEec--CCCcceEEEEECC-----
Q 008467 354 FEFHSG----PTLDVDWRNNVSFAT-------------SSTDNMIYVCKIGENRPIKTFA--GHQGEVNCVKWDP----- 409 (564)
Q Consensus 354 ~~~~~~----~~~~~~~~~~~~~~~-------------~~~d~~i~~~~~~~~~~~~~~~--~h~~~i~~v~~~~----- 409 (564)
|.-..- ....+.-.....|++ +..-|.|-+++... ..++.+. +.-+.-+.|+.-|
T Consensus 180 F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~FG~ 258 (336)
T TIGR03118 180 FIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIAPESFGS 258 (336)
T ss_pred ccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeChhhhCC
Confidence 100000 001111111222222 22335666666643 3334342 2223344566543
Q ss_pred -CCCEEEEEeCCCcEEEEeCCCCeeeeecccccc------cEEEEEEcc
Q 008467 410 -TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK------EIYTIRWSP 451 (564)
Q Consensus 410 -~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~------~i~~i~~~p 451 (564)
.+.+|+----||+|..||..+++.+..+....+ .++.|.|..
T Consensus 259 ~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 259 LSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 567787766799999999999888777665433 245566644
No 484
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=70.17 E-value=1.2e+02 Score=30.91 Aligned_cols=29 Identities=24% Similarity=0.501 Sum_probs=25.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 008467 495 VYSLAFSPTGEYLASGSLDKSMHIWSLKE 523 (564)
Q Consensus 495 i~~~~~spdg~~lasgs~dg~i~iw~~~~ 523 (564)
|.+++..+..+.|++.+.+|.|.+|++..
T Consensus 192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 192 IVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred eeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 88899999999999999999999999974
No 485
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=70.05 E-value=18 Score=32.56 Aligned_cols=59 Identities=15% Similarity=0.345 Sum_probs=43.6
Q ss_pred CEEEEEeCCCcEEEEeCC--CCeEEEEEecCCCEEEEEEccCCCEEEEEEcCC------cEEEE-Eee
Q 008467 505 EYLASGSLDKSMHIWSLK--EGKIVKTYTGNGGIFEVCWNKEGDKIAACFANH------TVCVL-DFR 563 (564)
Q Consensus 505 ~~lasgs~dg~i~iw~~~--~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~------~v~v~-~~~ 563 (564)
.+|..+...+.|.+|++. ...++.+|..-+.|..+..+..|++|++=-.+. .+++| |||
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhh
Confidence 444444556779999987 446788888888899999999999999863321 34555 766
No 486
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=69.00 E-value=1.5e+02 Score=30.90 Aligned_cols=115 Identities=18% Similarity=0.215 Sum_probs=57.4
Q ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccccccc---EEEEEEccCCCCCCCCCCcEEEEEEeC-----------
Q 008467 405 VKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE---IYTIRWSPTGSGTNNPNQQLILASASF----------- 470 (564)
Q Consensus 405 v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~---i~~i~~~p~~~~~~~~~~~~~l~s~s~----------- 470 (564)
+..-++|.+++..+ ..+..+|+- ++.+......... -+.+.+-|+|. +|+.+..
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn---------~L~l~~~~~~~~~~~~~~ 220 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGN---------LLILASETKYVDEDKDVD 220 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS----------EEEEEEETTEE-TS-EE-
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCC---------EEEEEeecccccCCCCcc
Confidence 55678888886555 677778875 3333322211110 12344455543 3333330
Q ss_pred --CCeEEEEeCCCCeEEEEEe--CCC-------------------------CCEEEEEEcC-CCCEEEEEeCCCcEEEEe
Q 008467 471 --DSTVKLWDVELGKLLYSLN--GHR-------------------------EPVYSLAFSP-TGEYLASGSLDKSMHIWS 520 (564)
Q Consensus 471 --dg~i~iwd~~~~~~~~~~~--~h~-------------------------~~i~~~~~sp-dg~~lasgs~dg~i~iw~ 520 (564)
...|..+| .+|+.+..+. .|- ..++++.+.| ++.+|+|+-.-..|...|
T Consensus 221 ~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id 299 (477)
T PF05935_consen 221 TVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKID 299 (477)
T ss_dssp --S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE
T ss_pred EecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEE
Confidence 22355566 6777766532 110 2389999999 666666666666899999
Q ss_pred CCCCeEEEEEec
Q 008467 521 LKEGKIVKTYTG 532 (564)
Q Consensus 521 ~~~~~~~~~~~~ 532 (564)
.+++++...+..
T Consensus 300 ~~t~~i~Wilg~ 311 (477)
T PF05935_consen 300 YRTGKIKWILGP 311 (477)
T ss_dssp -TTS-EEEEES-
T ss_pred CCCCcEEEEeCC
Confidence 899998877654
No 487
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=68.69 E-value=1.8e+02 Score=31.61 Aligned_cols=57 Identities=25% Similarity=0.432 Sum_probs=39.2
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCe--EEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEE
Q 008467 275 SKDVTTLDWNGEGTLLATGSYDGQ--ARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT 333 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~sg~~dg~--i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 333 (564)
...+..+.|+|+|..++..+.++. .++|-....- ....+...|....|+|.+..++.
T Consensus 59 ~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g--~~~~~~~~v~~~~~~~~g~~~~~ 117 (620)
T COG1506 59 GGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG--LITKTAFGVSDARWSPDGDRIAF 117 (620)
T ss_pred CCcccccccCCCCCEEEEEeccCCCcceEEEEecCC--ceeeeecccccceeCCCCCeEEE
Confidence 355778899999999998874432 3444322110 34456667888999999998887
No 488
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=67.39 E-value=1.2e+02 Score=29.12 Aligned_cols=163 Identities=15% Similarity=0.249 Sum_probs=80.8
Q ss_pred cEEEEECCCcceeEEEeecccC------eEE--EEcCCC-----ceEEEEeCCCeEEEEEcCCCceeeEecCCC------
Q 008467 339 TAIVWDVKTEEWKQQFEFHSGP------TLD--VDWRNN-----VSFATSSTDNMIYVCKIGENRPIKTFAGHQ------ 399 (564)
Q Consensus 339 ~v~iwd~~~~~~~~~~~~~~~~------~~~--~~~~~~-----~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~------ 399 (564)
.+.+||+.+.++++.+.+.... ..+ ++..+. ..+++-+..+.|.|+++.+++.-+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6778899998888877664321 222 333222 345666777789999998876544433221
Q ss_pred -------------cceEEEEECC---CCCEEEEEeCCCcEEEEeCCCC-----ee---------eeecccccccEEEEEE
Q 008467 400 -------------GEVNCVKWDP---TGSLLASCSDDVTAKIWNMKQD-----KY---------VHDLREHSKEIYTIRW 449 (564)
Q Consensus 400 -------------~~i~~v~~~~---~~~~las~s~dg~i~iwd~~~~-----~~---------~~~~~~~~~~i~~i~~ 449 (564)
..+..++.+| +++.|.-+...+. ++|.+.+. .. +..+-........++.
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 1244555544 4455554443321 23332211 00 0111000112233444
Q ss_pred ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-----CeEEEEEeCC-CCCEEEEEEcC--CCCEEEEEe
Q 008467 450 SPTGSGTNNPNQQLILASASFDSTVKLWDVEL-----GKLLYSLNGH-REPVYSLAFSP--TGEYLASGS 511 (564)
Q Consensus 450 ~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~h-~~~i~~~~~sp--dg~~lasgs 511 (564)
.+.| .++.+--..+.|..|+... ...+...... -..+.++++.+ +|.+.+..+
T Consensus 194 D~~G---------~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 194 DPNG---------NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp ETTT---------EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred CCCC---------cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 4444 2556666778999999875 2122222222 35778999999 777666543
No 489
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes. This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.
Probab=67.22 E-value=1.8 Score=32.24 Aligned_cols=30 Identities=27% Similarity=0.250 Sum_probs=25.0
Q ss_pred hhhhhHHHHHhcCCceeeeccccccCCccC
Q 008467 9 LNYLVFRYLQESGLLHSAFVLGYEAGINKC 38 (564)
Q Consensus 9 vn~Li~ryl~E~g~~~sa~~~~~E~~~~~~ 38 (564)
+|=||==||+=+||.+|+-+|+-|++....
T Consensus 21 i~eLIrEyLef~~l~~TlsVf~~Es~~~~~ 50 (81)
T PF09398_consen 21 INELIREYLEFNNLDYTLSVFQPESGQPEE 50 (81)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHT-TT-
T ss_pred HHHHHHHHHHHcCCccHHHHHhhccCCCCC
Confidence 578999999999999999999999988753
No 490
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=65.82 E-value=37 Score=25.72 Aligned_cols=49 Identities=24% Similarity=0.376 Sum_probs=31.1
Q ss_pred CeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCC
Q 008467 472 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKE 523 (564)
Q Consensus 472 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs-~dg~i~iw~~~~ 523 (564)
+.|..||... +.....+- ...+.|.++|++++|..++ ..+.|++|..++
T Consensus 36 ~~Vvyyd~~~--~~~va~g~-~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 36 GNVVYYDGKE--VKVVASGF-SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEEeCCE--eEEeeccC-CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 4455566432 22222322 3458899999999987665 568899998653
No 491
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=65.64 E-value=16 Score=20.83 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=19.3
Q ss_pred EEEEEEccCCCEEEEEEcCCcEEEE
Q 008467 536 IFEVCWNKEGDKIAACFANHTVCVL 560 (564)
Q Consensus 536 i~~~~w~~~g~~la~~~~~~~v~v~ 560 (564)
..+++.+++|+.+++=+.+.+|.+|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4678888888888888888777765
No 492
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=64.64 E-value=1.3e+02 Score=28.46 Aligned_cols=139 Identities=14% Similarity=0.216 Sum_probs=74.0
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe
Q 008467 404 CVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 483 (564)
Q Consensus 404 ~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 483 (564)
.++-.|||..-.++...+.|---|.++++...---+....-..|...|++. ..+.-.+ . -|.=.|-++..
T Consensus 66 dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~--------~Witd~~-~-aI~R~dpkt~e 135 (353)
T COG4257 66 DVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGS--------AWITDTG-L-AIGRLDPKTLE 135 (353)
T ss_pred ccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCC--------eeEecCc-c-eeEEecCcccc
Confidence 466677777767776666666566666654322222222223344444443 1222111 1 23333433332
Q ss_pred E-EEEEe--CCCCCEEEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEE
Q 008467 484 L-LYSLN--GHREPVYSLAFSPTGEYLASGSLD---------KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAAC 551 (564)
Q Consensus 484 ~-~~~~~--~h~~~i~~~~~spdg~~lasgs~d---------g~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~ 551 (564)
. .+.+. .-........|.+.|.+-.++... +.|++|.... ..+.+.+|-.|+|..-.+.
T Consensus 136 vt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq---------G~gpyGi~atpdGsvwyas 206 (353)
T COG4257 136 VTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ---------GGGPYGICATPDGSVWYAS 206 (353)
T ss_pred eEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC---------CCCCcceEECCCCcEEEEe
Confidence 2 12221 123456788999999988887521 2344444332 2346788999999977777
Q ss_pred EcCCcEEEEE
Q 008467 552 FANHTVCVLD 561 (564)
Q Consensus 552 ~~~~~v~v~~ 561 (564)
..+..+..+|
T Consensus 207 lagnaiarid 216 (353)
T COG4257 207 LAGNAIARID 216 (353)
T ss_pred ccccceEEcc
Confidence 6666666554
No 493
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=64.16 E-value=1.7e+02 Score=29.78 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=36.8
Q ss_pred EEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEE---EcCCCCEEEEEeCCCcEEEEeCC
Q 008467 463 LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA---FSPTGEYLASGSLDKSMHIWSLK 522 (564)
Q Consensus 463 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~---~spdg~~lasgs~dg~i~iw~~~ 522 (564)
..++.++.++++.||. ..++++.......|| +|. |..-...|++-+.+|.+.+-=+.
T Consensus 301 ~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLG 360 (418)
T PF14727_consen 301 LNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLG 360 (418)
T ss_pred eEEEEEecCCeEEEEe--CCeEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeC
Confidence 3577889999999985 346666665444554 332 33335677777888887765443
No 494
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=63.45 E-value=85 Score=30.02 Aligned_cols=87 Identities=17% Similarity=0.266 Sum_probs=51.2
Q ss_pred CeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe------CCCcEEEEeCCCCeEEEEEec------CCCEEEE
Q 008467 472 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS------LDKSMHIWSLKEGKIVKTYTG------NGGIFEV 539 (564)
Q Consensus 472 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs------~dg~i~iw~~~~~~~~~~~~~------~~~i~~~ 539 (564)
..|++||..+.+=..--.+-.+.|+++.|..+.+.+++|. ....+..||..+.... .+.. .+.+..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEEE
Confidence 4588999875543222233456799999987778888775 3457889998876532 2222 2456666
Q ss_pred EEcc-CC-CEEEEEE-cCCcEEE
Q 008467 540 CWNK-EG-DKIAACF-ANHTVCV 559 (564)
Q Consensus 540 ~w~~-~g-~~la~~~-~~~~v~v 559 (564)
.... |+ +..++|. .++...|
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l 117 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFL 117 (281)
T ss_pred EeeccCCceEEEeceecCCCceE
Confidence 6532 33 3444443 4444333
No 495
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=63.17 E-value=1.8e+02 Score=29.69 Aligned_cols=29 Identities=14% Similarity=0.168 Sum_probs=24.3
Q ss_pred CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 535 GIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 535 ~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
.|..+++++..+.|.+...+|.+.+|++.
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence 38899999999999999999999999984
No 496
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=62.35 E-value=1.7e+02 Score=29.17 Aligned_cols=159 Identities=14% Similarity=0.111 Sum_probs=72.6
Q ss_pred CCCEEEEeeCCCcEEEEECCCcceeEEEeeccc-CeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCC---cce
Q 008467 327 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ---GEV 402 (564)
Q Consensus 327 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~---~~i 402 (564)
+|+ ++.++.++.+...|..+++.+-.+..... .........+..+...+.++.++..+..++...-.+..-. ..+
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~ 189 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSI 189 (370)
T ss_pred CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCcccccc
Confidence 554 88888999888999888887766555440 0000011112222223355666655555444332211110 000
Q ss_pred EEEEECCCCCEEEEEeC--CCcEEEEeCCCCeeeeecccccccEEEEEE--ccCCCC-CCCCCCcEEEEEEeCCCeEEEE
Q 008467 403 NCVKWDPTGSLLASCSD--DVTAKIWNMKQDKYVHDLREHSKEIYTIRW--SPTGSG-TNNPNQQLILASASFDSTVKLW 477 (564)
Q Consensus 403 ~~v~~~~~~~~las~s~--dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~--~p~~~~-~~~~~~~~~l~s~s~dg~i~iw 477 (564)
..--...++. +..+.. ++.+.-.|..++......+.+.. +..... .|.-.. ...-+. -+..++.++.+...
T Consensus 190 ~~~~~~~~~~-vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~-~~~~~~~~~~~~~~~~v~v~~--~~~~~~~~g~~~~l 265 (370)
T COG1520 190 YGSPAIASGT-VYVGSDGYDGILYALNAEDGTLKWSQKVSQT-IGRTAISTTPAVDGGPVYVDG--GVYAGSYGGKLLCL 265 (370)
T ss_pred ccCceeecce-EEEecCCCcceEEEEEccCCcEeeeeeeecc-cCcccccccccccCceEEECC--cEEEEecCCeEEEE
Confidence 0000012233 333333 44444455555554433211110 000000 000000 000000 13567778889999
Q ss_pred eCCCCeEEEEEeC
Q 008467 478 DVELGKLLYSLNG 490 (564)
Q Consensus 478 d~~~~~~~~~~~~ 490 (564)
|..+++.++....
T Consensus 266 ~~~~G~~~W~~~~ 278 (370)
T COG1520 266 DADTGELIWSFPA 278 (370)
T ss_pred EcCCCceEEEEec
Confidence 9999999988775
No 497
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=60.93 E-value=22 Score=20.71 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=20.5
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEEEE
Q 008467 464 ILASASFDSTVKLWDVELGKLLYSL 488 (564)
Q Consensus 464 ~l~s~s~dg~i~iwd~~~~~~~~~~ 488 (564)
.+..++.+|.+..+|..+|+.++..
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 4666788999999999999887654
No 498
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=60.77 E-value=1.8e+02 Score=28.97 Aligned_cols=156 Identities=13% Similarity=0.066 Sum_probs=77.7
Q ss_pred CceEEEEeCCCeEEEEEcCCCceeeEecCCC-cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEE
Q 008467 369 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 447 (564)
Q Consensus 369 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i 447 (564)
+..+..++.++.++.++..++..+-.+.... -.+.....-.++. +..++.++.+...+..++...-........-..+
T Consensus 111 ~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~-v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~ 189 (370)
T COG1520 111 DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGT-VYVGTDDGHLYALNADTGTLKWTYETPAPLSLSI 189 (370)
T ss_pred CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcE-EEEecCCCeEEEEEccCCcEEEEEecCCcccccc
Confidence 3446666777778888876666655554443 1121222222333 3333367777777777666543322111000000
Q ss_pred EEccCCCCCCCCCCcEEEEEEeC--CCeEEEEeCCCCeEEEEEeCCC----CCEEEEEEcCCC-----CEEEEEeCCCcE
Q 008467 448 RWSPTGSGTNNPNQQLILASASF--DSTVKLWDVELGKLLYSLNGHR----EPVYSLAFSPTG-----EYLASGSLDKSM 516 (564)
Q Consensus 448 ~~~p~~~~~~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~h~----~~i~~~~~spdg-----~~lasgs~dg~i 516 (564)
.-+|.. ... .+..+.. ++.+.-.|+.+|........+. ..+.....-..+ .-+..++.++.+
T Consensus 190 ~~~~~~-----~~~--~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~ 262 (370)
T COG1520 190 YGSPAI-----ASG--TVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKL 262 (370)
T ss_pred ccCcee-----ecc--eEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeE
Confidence 111110 011 2334444 5667777888888877643211 111001111111 223456677878
Q ss_pred EEEeCCCCeEEEEEec
Q 008467 517 HIWSLKEGKIVKTYTG 532 (564)
Q Consensus 517 ~iw~~~~~~~~~~~~~ 532 (564)
...+..+|+.+..+..
T Consensus 263 ~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 263 LCLDADTGELIWSFPA 278 (370)
T ss_pred EEEEcCCCceEEEEec
Confidence 8889999988877765
No 499
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=60.71 E-value=1.6e+02 Score=28.32 Aligned_cols=223 Identities=16% Similarity=0.170 Sum_probs=117.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECC-----Cc---eeEeecC-----CCCCEEEEEeCCCCC------------E
Q 008467 276 KDVTTLDWNGEGTLLATGSYDGQARIWSTN-----GD---LKCTLSK-----HKGPIFSLKWNKKGD------------Y 330 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-----~~---~~~~~~~-----h~~~V~~l~~~~~~~------------~ 330 (564)
..-..|+++|.+.+-++....+...+|+.+ +. +...+.. ..+..+.+.|+.... .
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 345678999999888888888999999976 21 2333332 234567888875433 3
Q ss_pred EEEeeCCCcEEEEECCCcce---eE--EEeec-ccCeE---EEEc--CCCceEEEEeCCCeEEEEEcCCCcee--eEec-
Q 008467 331 LLTGSCDKTAIVWDVKTEEW---KQ--QFEFH-SGPTL---DVDW--RNNVSFATSSTDNMIYVCKIGENRPI--KTFA- 396 (564)
Q Consensus 331 l~s~s~D~~v~iwd~~~~~~---~~--~~~~~-~~~~~---~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~--~~~~- 396 (564)
++.++.||+|.-|...-... .. .+... .+.++ .+.- ..+..+++--..++|-++|-.=.++. ..|.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 67888999999998532222 11 11111 12221 1111 12333444444555655543221110 0000
Q ss_pred ---------------CCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecc--cccccEEEEEEccCCCCCCCC
Q 008467 397 ---------------GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR--EHSKEIYTIRWSPTGSGTNNP 459 (564)
Q Consensus 397 ---------------~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~--~~~~~i~~i~~~p~~~~~~~~ 459 (564)
+..-.|+-..-+++.+-=+.|.--|.|-+||.. +..++.+. +.-..-+.++..|..-+....
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg 261 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSG 261 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCC
Confidence 000112222223333222334445688888875 34444442 112223556665543332221
Q ss_pred CCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC------CCEEEEEEcC
Q 008467 460 NQQLILASASFDSTVKLWDVELGKLLYSLNGHR------EPVYSLAFSP 502 (564)
Q Consensus 460 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~------~~i~~~~~sp 502 (564)
.+|+.--.||+|..||..+++.+-.+..-. ...+.|+|..
T Consensus 262 ---~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 262 ---ALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred ---CeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 155555669999999999998877765432 2356777765
No 500
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=60.04 E-value=1.5e+02 Score=27.77 Aligned_cols=67 Identities=10% Similarity=0.064 Sum_probs=43.1
Q ss_pred CCEEEEEE------cCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEE----EEEEc-cCCCEEEEEEcCCcEEEE
Q 008467 493 EPVYSLAF------SPTG-EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF----EVCWN-KEGDKIAACFANHTVCVL 560 (564)
Q Consensus 493 ~~i~~~~~------spdg-~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~----~~~w~-~~g~~la~~~~~~~v~v~ 560 (564)
..|+|++- .+++ ..|+.|.++|.|.|.|.+.-.++..+.-.+... .-.|+ -|.+ |++++.||.|.++
T Consensus 177 t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyR-I~Va~Rdg~iy~i 255 (257)
T PF14779_consen 177 TVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYR-IVVACRDGKIYTI 255 (257)
T ss_pred ceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceE-EEEEeCCCEEEEE
Confidence 35777652 1222 578999999999999998888777765443211 22355 4554 4555588887654
Done!