Query 008467
Match_columns 564
No_of_seqs 522 out of 3580
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 04:15:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008467.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008467hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 7.4E-52 2.5E-56 422.8 43.1 297 209-563 101-410 (410)
2 1nr0_A Actin interacting prote 100.0 5.1E-46 1.8E-50 399.3 47.4 332 207-563 50-521 (611)
3 3ow8_A WD repeat-containing pr 100.0 4.1E-46 1.4E-50 367.2 42.8 289 210-563 26-320 (321)
4 1r5m_A SIR4-interacting protei 100.0 4.9E-46 1.7E-50 380.7 43.9 337 213-563 42-424 (425)
5 1got_B GT-beta; complex (GTP-b 100.0 2.5E-45 8.5E-50 364.9 44.8 286 208-561 47-340 (340)
6 1nr0_A Actin interacting prote 100.0 3.9E-45 1.3E-49 392.5 47.4 335 209-563 140-566 (611)
7 2ynn_A Coatomer subunit beta'; 100.0 7.8E-45 2.7E-49 355.5 42.8 290 209-563 6-301 (304)
8 2ymu_A WD-40 repeat protein; u 100.0 2.3E-44 7.9E-49 384.3 50.0 324 206-561 252-577 (577)
9 2pbi_B Guanine nucleotide-bind 100.0 1.1E-44 3.9E-49 362.1 43.6 287 208-520 56-354 (354)
10 3frx_A Guanine nucleotide-bind 100.0 1.5E-43 5E-48 348.8 45.1 289 210-563 11-316 (319)
11 4gqb_B Methylosome protein 50; 100.0 1.3E-44 4.4E-49 359.4 37.4 293 214-563 28-330 (344)
12 3fm0_A Protein CIAO1; WDR39,SG 100.0 8.9E-44 3E-48 354.4 42.5 294 209-563 8-334 (345)
13 4g56_B MGC81050 protein; prote 100.0 2.6E-44 8.9E-49 359.8 36.9 288 213-563 39-342 (357)
14 3iz6_a 40S ribosomal protein R 100.0 7.8E-45 2.7E-49 367.1 32.7 291 209-525 59-377 (380)
15 2hes_X YDR267CP; beta-propelle 100.0 1.8E-43 6.1E-48 350.0 41.1 295 209-563 7-327 (330)
16 2ymu_A WD-40 repeat protein; u 100.0 1.2E-42 4E-47 371.1 49.8 324 207-562 212-537 (577)
17 1gxr_A ESG1, transducin-like e 100.0 9.1E-42 3.1E-46 337.8 44.2 321 215-564 8-337 (337)
18 1erj_A Transcriptional repress 100.0 8.4E-42 2.9E-46 346.5 44.3 298 214-563 62-388 (393)
19 4ery_A WD repeat-containing pr 100.0 2E-41 6.8E-46 332.5 45.4 288 209-563 16-311 (312)
20 2pbi_B Guanine nucleotide-bind 100.0 1.4E-41 4.8E-46 339.7 44.3 280 273-561 62-354 (354)
21 2pm9_A Protein WEB1, protein t 100.0 2.9E-44 1E-48 367.1 24.7 324 216-563 12-413 (416)
22 2xzm_R RACK1; ribosome, transl 100.0 3.9E-42 1.3E-46 342.4 38.6 294 208-524 13-341 (343)
23 4aow_A Guanine nucleotide-bind 100.0 5.6E-41 1.9E-45 332.9 43.3 293 210-525 32-339 (340)
24 3iz6_a 40S ribosomal protein R 100.0 2.5E-42 8.5E-47 348.7 33.6 282 273-563 64-374 (380)
25 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.8E-40 6.1E-45 342.6 46.6 317 209-563 111-441 (445)
26 1pgu_A Actin interacting prote 100.0 5E-40 1.7E-44 353.2 46.1 328 208-564 152-614 (615)
27 3dm0_A Maltose-binding peripla 100.0 1.4E-40 4.9E-45 362.7 42.5 293 210-563 376-692 (694)
28 3zwl_B Eukaryotic translation 100.0 1.4E-39 4.7E-44 326.3 45.0 297 209-563 25-345 (369)
29 2xzm_R RACK1; ribosome, transl 100.0 1.5E-39 5E-44 323.7 41.3 280 272-563 18-339 (343)
30 3ow8_A WD repeat-containing pr 100.0 7.1E-40 2.4E-44 322.6 37.6 246 210-522 74-320 (321)
31 2oaj_A Protein SNI1; WD40 repe 100.0 2.1E-40 7.1E-45 368.9 38.0 332 211-563 12-518 (902)
32 3ei3_B DNA damage-binding prot 100.0 3.8E-40 1.3E-44 333.1 36.4 285 209-563 66-381 (383)
33 3vl1_A 26S proteasome regulato 100.0 2E-40 6.8E-45 339.3 34.7 319 218-563 58-418 (420)
34 1pgu_A Actin interacting prote 100.0 3.5E-39 1.2E-43 346.5 44.5 345 207-563 54-571 (615)
35 3v7d_B Cell division control p 100.0 5.3E-39 1.8E-43 333.4 44.2 317 209-560 114-459 (464)
36 3mkq_A Coatomer beta'-subunit; 100.0 2.7E-39 9.1E-44 359.4 43.9 327 209-563 6-385 (814)
37 4gqb_B Methylosome protein 50; 100.0 1.3E-39 4.4E-44 323.4 36.5 253 213-527 79-335 (344)
38 1sq9_A Antiviral protein SKI8; 100.0 1.2E-39 4.2E-44 330.7 36.7 295 209-525 9-397 (397)
39 1vyh_C Platelet-activating fac 100.0 2E-39 6.7E-44 330.9 36.8 248 208-522 142-410 (410)
40 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-38 3.9E-43 370.3 46.5 336 209-563 608-1073(1249)
41 3k26_A Polycomb protein EED; W 100.0 1.5E-39 5.1E-44 325.8 33.1 293 210-563 12-365 (366)
42 2oaj_A Protein SNI1; WD40 repe 100.0 5E-39 1.7E-43 357.8 40.2 328 215-562 97-659 (902)
43 2pm7_B Protein transport prote 100.0 6.9E-39 2.3E-43 312.1 35.5 254 209-522 2-284 (297)
44 3odt_A Protein DOA1; ubiquitin 100.0 1.8E-38 6.1E-43 310.8 38.3 288 208-531 10-304 (313)
45 3sfz_A APAF-1, apoptotic pepti 100.0 2.8E-40 9.4E-45 383.9 28.7 342 209-562 875-1247(1249)
46 1k8k_C P40, ARP2/3 complex 41 100.0 9.4E-39 3.2E-43 321.0 36.0 291 211-563 3-360 (372)
47 4aow_A Guanine nucleotide-bind 100.0 2.2E-37 7.6E-42 306.9 45.4 281 272-563 35-336 (340)
48 2j04_B YDR362CP, TAU91; beta p 100.0 1.3E-40 4.5E-45 347.2 23.2 310 228-564 173-517 (524)
49 1sq9_A Antiviral protein SKI8; 100.0 2.4E-38 8.1E-43 321.2 38.8 280 272-563 13-394 (397)
50 3i2n_A WD repeat-containing pr 100.0 9.3E-39 3.2E-43 319.0 33.9 292 210-526 12-356 (357)
51 1got_B GT-beta; complex (GTP-b 100.0 4.7E-38 1.6E-42 312.5 38.7 244 273-563 53-300 (340)
52 1gxr_A ESG1, transducin-like e 100.0 3.6E-37 1.2E-41 304.7 44.2 285 212-521 47-335 (337)
53 4e54_B DNA damage-binding prot 100.0 3.3E-39 1.1E-43 332.0 29.8 286 211-563 114-429 (435)
54 2ynn_A Coatomer subunit beta'; 100.0 6.6E-38 2.3E-42 306.2 37.2 249 307-563 4-258 (304)
55 3dw8_B Serine/threonine-protei 100.0 1.3E-38 4.3E-43 328.6 33.3 302 214-563 26-445 (447)
56 4a11_B DNA excision repair pro 100.0 2.1E-37 7.1E-42 315.0 41.5 342 208-563 35-404 (408)
57 3frx_A Guanine nucleotide-bind 100.0 1.3E-37 4.3E-42 306.4 38.5 246 272-563 14-266 (319)
58 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.5E-38 1.9E-42 312.6 34.8 257 211-530 56-342 (345)
59 2pm7_B Protein transport prote 100.0 1E-37 3.4E-42 303.9 35.3 252 273-563 7-284 (297)
60 4aez_A CDC20, WD repeat-contai 100.0 1.7E-37 5.7E-42 315.8 38.2 284 211-563 86-379 (401)
61 4g56_B MGC81050 protein; prote 100.0 4.4E-38 1.5E-42 314.6 33.1 252 211-524 89-344 (357)
62 3dwl_C Actin-related protein 2 100.0 1.7E-39 5.7E-44 327.5 22.9 287 212-562 7-377 (377)
63 3odt_A Protein DOA1; ubiquitin 100.0 8.5E-37 2.9E-41 298.9 40.9 273 273-563 16-295 (313)
64 3gre_A Serine/threonine-protei 100.0 7E-38 2.4E-42 322.3 32.5 309 223-561 34-437 (437)
65 2hes_X YDR267CP; beta-propelle 100.0 1.4E-37 4.6E-42 307.7 33.0 251 214-523 56-328 (330)
66 3bg1_A Protein SEC13 homolog; 100.0 3.1E-38 1.1E-42 310.3 27.3 255 210-522 7-292 (316)
67 4h5i_A Guanine nucleotide-exch 100.0 7.5E-38 2.6E-42 313.8 28.5 289 217-524 15-344 (365)
68 1yfq_A Cell cycle arrest prote 100.0 4.7E-37 1.6E-41 305.0 33.7 282 211-520 6-321 (342)
69 3mkq_A Coatomer beta'-subunit; 100.0 1.5E-36 5E-41 337.4 41.0 324 208-561 47-420 (814)
70 3f3f_A Nucleoporin SEH1; struc 100.0 5.8E-37 2E-41 304.1 33.3 303 210-530 5-344 (351)
71 2pm9_A Protein WEB1, protein t 100.0 7.1E-38 2.4E-42 319.7 26.2 279 277-563 14-336 (416)
72 1erj_A Transcriptional repress 100.0 2.9E-36 9.8E-41 305.8 37.3 249 215-523 122-389 (393)
73 3gre_A Serine/threonine-protei 100.0 3.2E-37 1.1E-41 317.4 30.2 289 207-520 53-437 (437)
74 4gga_A P55CDC, cell division c 100.0 1.8E-35 6.1E-40 302.8 42.4 275 277-563 107-394 (420)
75 3i2n_A WD repeat-containing pr 100.0 1.7E-36 5.6E-41 302.7 33.6 280 274-563 17-352 (357)
76 3bg1_A Protein SEC13 homolog; 100.0 4E-37 1.4E-41 302.4 27.5 252 273-563 11-292 (316)
77 3mmy_A MRNA export factor; mRN 100.0 3.3E-36 1.1E-40 301.5 34.6 291 205-521 28-344 (368)
78 1r5m_A SIR4-interacting protei 100.0 4.4E-36 1.5E-40 306.8 36.2 277 275-563 45-360 (425)
79 4gga_A P55CDC, cell division c 100.0 5.6E-35 1.9E-39 299.1 42.3 284 219-529 108-401 (420)
80 1p22_A F-BOX/WD-repeat protein 100.0 8E-36 2.8E-40 306.8 35.7 292 212-542 129-433 (435)
81 4ggc_A P55CDC, cell division c 100.0 1.1E-34 3.9E-39 284.6 41.5 276 278-563 28-314 (318)
82 3v7d_B Cell division control p 100.0 4.6E-35 1.6E-39 303.7 40.4 269 278-563 125-420 (464)
83 1p22_A F-BOX/WD-repeat protein 100.0 4.1E-35 1.4E-39 301.6 36.7 268 274-563 132-413 (435)
84 3vl1_A 26S proteasome regulato 100.0 2.7E-36 9.3E-41 308.6 27.8 283 278-563 59-364 (420)
85 2j04_A TAU60, YPL007P, hypothe 100.0 3.6E-37 1.2E-41 313.3 20.8 298 216-553 15-350 (588)
86 3jrp_A Fusion protein of prote 100.0 2.3E-35 7.8E-40 296.8 33.6 255 209-523 4-287 (379)
87 2j04_B YDR362CP, TAU91; beta p 100.0 3E-36 1E-40 314.3 28.0 293 211-523 202-517 (524)
88 1yfq_A Cell cycle arrest prote 100.0 2.2E-35 7.5E-40 292.9 31.5 269 273-556 9-315 (342)
89 4ggc_A P55CDC, cell division c 100.0 6.3E-34 2.2E-38 279.2 41.4 279 219-524 28-316 (318)
90 4ery_A WD repeat-containing pr 100.0 3E-34 1E-38 281.4 38.5 248 307-563 14-267 (312)
91 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.1E-34 1.4E-38 295.0 41.2 279 208-523 151-442 (445)
92 4h5i_A Guanine nucleotide-exch 100.0 6.7E-35 2.3E-39 292.3 31.4 276 275-563 14-342 (365)
93 3dm0_A Maltose-binding peripla 100.0 2.6E-34 9E-39 313.3 36.9 243 272-563 379-631 (694)
94 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.2E-33 4E-38 292.0 39.0 299 217-563 5-390 (450)
95 4a11_B DNA excision repair pro 100.0 9.2E-34 3.2E-38 288.0 37.4 281 273-563 41-364 (408)
96 1k8k_C P40, ARP2/3 complex 41 100.0 5.9E-34 2E-38 286.0 33.9 241 274-563 7-273 (372)
97 4e54_B DNA damage-binding prot 100.0 8.6E-35 2.9E-39 299.1 25.9 264 210-527 158-434 (435)
98 3jrp_A Fusion protein of prote 100.0 5.5E-34 1.9E-38 286.7 31.0 257 307-563 2-286 (379)
99 3vu4_A KMHSV2; beta-propeller 100.0 2.6E-33 8.8E-38 279.9 34.8 272 273-563 17-335 (355)
100 3ei3_B DNA damage-binding prot 100.0 6.5E-34 2.2E-38 287.4 30.3 253 213-523 115-382 (383)
101 3dwl_C Actin-related protein 2 100.0 2.9E-35 9.9E-40 296.5 19.1 239 275-562 11-279 (377)
102 2aq5_A Coronin-1A; WD40 repeat 100.0 8.4E-34 2.9E-38 288.6 29.6 275 278-563 37-341 (402)
103 3dw8_B Serine/threonine-protei 100.0 2.4E-34 8.2E-39 296.5 25.4 275 274-563 27-372 (447)
104 3mmy_A MRNA export factor; mRN 100.0 3.9E-33 1.3E-37 279.2 32.9 278 273-559 37-341 (368)
105 3f3f_A Nucleoporin SEH1; struc 100.0 6.5E-33 2.2E-37 274.9 34.2 248 310-563 5-336 (351)
106 3jro_A Fusion protein of prote 100.0 3.4E-34 1.2E-38 314.4 26.4 254 210-523 3-285 (753)
107 2xyi_A Probable histone-bindin 100.0 4.8E-33 1.6E-37 285.6 32.3 260 210-524 122-411 (430)
108 3zwl_B Eukaryotic translation 100.0 3.9E-32 1.3E-36 272.0 38.0 240 273-563 30-303 (369)
109 2aq5_A Coronin-1A; WD40 repeat 100.0 1.5E-33 5.1E-38 286.7 28.0 287 218-527 36-346 (402)
110 4aez_A CDC20, WD repeat-contai 100.0 1.1E-32 3.8E-37 280.2 34.4 247 214-530 132-387 (401)
111 3k26_A Polycomb protein EED; W 100.0 1.4E-33 4.8E-38 282.3 26.8 266 215-522 68-365 (366)
112 3lrv_A PRE-mRNA-splicing facto 100.0 3.4E-34 1.2E-38 285.0 21.8 263 223-560 43-329 (343)
113 3bws_A Protein LP49; two-domai 100.0 1.9E-31 6.6E-36 273.8 43.0 277 276-563 123-431 (433)
114 3vu4_A KMHSV2; beta-propeller 100.0 5.9E-33 2E-37 277.3 30.6 276 211-523 14-336 (355)
115 2xtc_A F-box-like/WD repeat-co 100.0 6.7E-37 2.3E-41 224.3 0.1 86 3-91 2-87 (90)
116 2xyi_A Probable histone-bindin 100.0 2.8E-32 9.7E-37 279.8 32.7 246 310-563 122-409 (430)
117 3jro_A Fusion protein of prote 100.0 5.5E-33 1.9E-37 304.8 25.5 251 273-563 7-284 (753)
118 4gq1_A NUP37; propeller, trans 100.0 1.9E-32 6.4E-37 277.6 25.8 243 278-521 92-387 (393)
119 2j04_A TAU60, YPL007P, hypothe 100.0 5.2E-33 1.8E-37 282.9 20.3 258 275-563 15-296 (588)
120 3lrv_A PRE-mRNA-splicing facto 100.0 1.8E-31 6.1E-36 265.4 24.0 235 282-563 43-291 (343)
121 1l0q_A Surface layer protein; 100.0 1.3E-28 4.5E-33 249.1 44.6 273 229-533 3-285 (391)
122 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4E-30 1.4E-34 265.5 33.6 237 276-562 5-337 (450)
123 2w18_A PALB2, fancn, partner a 100.0 1.5E-29 5.2E-34 242.1 32.5 274 276-563 40-356 (356)
124 1l0q_A Surface layer protein; 100.0 1.4E-28 4.8E-33 248.8 39.8 263 288-563 3-274 (391)
125 3bws_A Protein LP49; two-domai 100.0 8.7E-29 3E-33 254.0 37.2 282 217-523 123-432 (433)
126 4gq1_A NUP37; propeller, trans 100.0 3.4E-30 1.2E-34 261.0 25.7 275 277-561 17-386 (393)
127 2w18_A PALB2, fancn, partner a 100.0 4.7E-30 1.6E-34 245.6 24.6 187 286-521 144-355 (356)
128 1nir_A Nitrite reductase; hemo 100.0 7.6E-28 2.6E-32 252.9 36.9 312 223-563 144-513 (543)
129 2hqs_A Protein TOLB; TOLB, PAL 100.0 5.7E-28 2E-32 246.1 28.2 299 217-545 63-409 (415)
130 2ecf_A Dipeptidyl peptidase IV 100.0 1.4E-27 4.9E-32 262.2 32.5 333 217-562 37-457 (741)
131 1k32_A Tricorn protease; prote 99.9 8.8E-26 3E-30 256.8 31.7 323 207-563 43-460 (1045)
132 1k32_A Tricorn protease; prote 99.9 1.9E-25 6.6E-30 254.0 31.9 337 208-561 91-499 (1045)
133 2z3z_A Dipeptidyl aminopeptida 99.9 1.1E-24 3.9E-29 237.8 30.9 319 219-563 28-434 (706)
134 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.4E-24 4.9E-29 221.0 28.9 272 277-562 64-385 (415)
135 1xfd_A DIP, dipeptidyl aminope 99.9 4.3E-25 1.5E-29 241.8 25.1 313 219-554 19-430 (723)
136 1nir_A Nitrite reductase; hemo 99.9 1.1E-23 3.8E-28 221.2 32.8 286 219-533 181-524 (543)
137 3vgz_A Uncharacterized protein 99.9 1.2E-22 4E-27 202.0 36.5 268 276-554 41-334 (353)
138 2ecf_A Dipeptidyl peptidase IV 99.9 4.9E-24 1.7E-28 234.1 29.1 277 275-563 36-412 (741)
139 3u4y_A Uncharacterized protein 99.9 8.2E-23 2.8E-27 201.4 34.9 270 283-563 5-303 (331)
140 2ojh_A Uncharacterized protein 99.9 9.2E-24 3.2E-28 203.9 25.0 253 292-555 17-293 (297)
141 1ri6_A Putative isomerase YBHE 99.9 1.5E-22 5.3E-27 200.1 32.9 292 230-547 7-336 (343)
142 3u4y_A Uncharacterized protein 99.9 2.5E-22 8.4E-27 198.0 31.8 276 223-526 4-307 (331)
143 2ojh_A Uncharacterized protein 99.9 5.9E-23 2E-27 198.2 26.3 240 208-514 33-293 (297)
144 1ri6_A Putative isomerase YBHE 99.9 1.6E-22 5.4E-27 200.0 29.7 265 289-563 7-307 (343)
145 1xfd_A DIP, dipeptidyl aminope 99.9 1.3E-23 4.4E-28 230.1 22.2 274 278-563 19-392 (723)
146 2z3z_A Dipeptidyl aminopeptida 99.9 1.7E-22 5.7E-27 220.6 30.1 278 217-525 82-437 (706)
147 3o4h_A Acylamino-acid-releasin 99.9 4.2E-23 1.5E-27 220.1 24.2 260 276-556 22-304 (582)
148 1pby_B Quinohemoprotein amine 99.9 5.8E-22 2E-26 195.4 29.5 270 288-563 2-309 (337)
149 3vgz_A Uncharacterized protein 99.9 2E-20 6.8E-25 185.8 35.8 270 216-514 40-335 (353)
150 1pby_B Quinohemoprotein amine 99.9 4.3E-21 1.5E-25 189.2 30.1 273 229-533 2-320 (337)
151 2oit_A Nucleoporin 214KDA; NH2 99.9 7.8E-22 2.7E-26 201.5 25.4 245 276-561 37-330 (434)
152 2oit_A Nucleoporin 214KDA; NH2 99.9 1.5E-21 5.1E-26 199.4 25.2 253 217-522 37-332 (434)
153 1z68_A Fibroblast activation p 99.9 9.2E-22 3.1E-26 215.2 24.0 317 221-562 20-441 (719)
154 3hfq_A Uncharacterized protein 99.9 3.2E-20 1.1E-24 184.2 31.8 249 276-563 40-316 (347)
155 3o4h_A Acylamino-acid-releasin 99.9 5.9E-21 2E-25 203.5 26.2 268 216-523 21-315 (582)
156 3hfq_A Uncharacterized protein 99.9 6.4E-20 2.2E-24 182.0 30.1 252 214-528 37-324 (347)
157 3scy_A Hypothetical bacterial 99.9 2.9E-19 9.9E-24 178.4 34.8 268 288-563 14-336 (361)
158 1jmx_B Amine dehydrogenase; ox 99.9 7.4E-20 2.5E-24 181.3 28.8 275 221-535 4-337 (349)
159 1jmx_B Amine dehydrogenase; ox 99.9 1E-19 3.5E-24 180.2 28.4 270 280-563 4-324 (349)
160 4a5s_A Dipeptidyl peptidase 4 99.9 3.2E-20 1.1E-24 203.3 24.9 279 218-554 18-383 (740)
161 3pe7_A Oligogalacturonate lyas 99.9 1.9E-19 6.5E-24 181.4 28.0 273 281-563 41-381 (388)
162 1z68_A Fibroblast activation p 99.9 5.8E-21 2E-25 208.9 17.4 271 280-563 20-390 (719)
163 3scy_A Hypothetical bacterial 99.8 5.4E-18 1.9E-22 169.1 35.0 256 276-542 50-360 (361)
164 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.2E-17 7.4E-22 165.1 33.2 264 290-563 5-340 (365)
165 1jof_A Carboxy-CIS,CIS-muconat 99.8 5E-18 1.7E-22 169.7 27.2 246 217-525 40-343 (365)
166 3c5m_A Oligogalacturonate lyas 99.8 1.6E-18 5.6E-23 174.8 23.0 271 278-562 38-380 (396)
167 2oiz_A Aromatic amine dehydrog 99.8 1.6E-17 5.4E-22 165.5 28.9 280 236-546 29-360 (361)
168 3azo_A Aminopeptidase; POP fam 99.8 4.3E-18 1.5E-22 184.3 26.6 281 210-561 17-364 (662)
169 3pe7_A Oligogalacturonate lyas 99.8 9.8E-18 3.4E-22 168.8 27.5 285 209-521 23-380 (388)
170 3fvz_A Peptidyl-glycine alpha- 99.8 8.5E-17 2.9E-21 158.2 31.6 247 275-563 23-321 (329)
171 1q7f_A NHL, brain tumor CG1071 99.8 2.6E-16 9E-21 151.3 34.0 235 275-563 29-279 (286)
172 1q7f_A NHL, brain tumor CG1071 99.8 4.5E-16 1.5E-20 149.7 33.4 247 214-524 27-281 (286)
173 3fvz_A Peptidyl-glycine alpha- 99.8 1.1E-16 3.8E-21 157.4 29.5 248 217-522 24-321 (329)
174 3c5m_A Oligogalacturonate lyas 99.8 5.1E-17 1.8E-21 163.8 23.3 276 219-525 38-386 (396)
175 2dg1_A DRP35, lactonase; beta 99.8 5.6E-16 1.9E-20 152.6 29.6 267 276-555 6-301 (333)
176 2gop_A Trilobed protease; beta 99.8 7.2E-16 2.4E-20 152.6 29.3 256 276-562 15-329 (347)
177 4a5s_A Dipeptidyl peptidase 4 99.7 8.2E-17 2.8E-21 176.3 24.0 310 210-554 50-436 (740)
178 2gop_A Trilobed protease; beta 99.7 1.7E-15 5.9E-20 149.9 31.1 258 218-526 16-333 (347)
179 1qks_A Cytochrome CD1 nitrite 99.7 1.6E-14 5.6E-19 151.2 38.2 310 226-563 165-537 (567)
180 3e5z_A Putative gluconolactona 99.7 1.5E-15 5.1E-20 146.9 27.2 233 276-561 28-283 (296)
181 3azo_A Aminopeptidase; POP fam 99.7 1E-15 3.5E-20 165.5 24.4 236 274-562 22-321 (662)
182 2xdw_A Prolyl endopeptidase; a 99.7 7.9E-15 2.7E-19 159.8 31.5 252 277-562 126-412 (710)
183 2z2n_A Virginiamycin B lyase; 99.7 5.7E-13 2E-17 128.4 41.3 277 214-563 12-294 (299)
184 2dg1_A DRP35, lactonase; beta 99.7 7.9E-15 2.7E-19 144.3 28.1 265 218-514 7-301 (333)
185 2oiz_A Aromatic amine dehydrog 99.7 1.3E-14 4.5E-19 144.3 29.4 262 286-563 14-333 (361)
186 2xdw_A Prolyl endopeptidase; a 99.7 5.9E-15 2E-19 160.8 29.3 244 214-525 122-416 (710)
187 3e5z_A Putative gluconolactona 99.7 3.2E-14 1.1E-18 137.5 28.5 259 210-527 21-290 (296)
188 2bkl_A Prolyl endopeptidase; m 99.7 3.4E-15 1.2E-19 162.2 20.9 245 213-484 117-400 (695)
189 2bkl_A Prolyl endopeptidase; m 99.6 8.8E-15 3E-19 159.0 22.1 238 275-562 120-395 (695)
190 3dsm_A Uncharacterized protein 99.6 3.9E-13 1.3E-17 131.9 31.0 281 236-542 15-320 (328)
191 3no2_A Uncharacterized protein 99.6 1.5E-13 5.1E-18 131.0 26.9 213 285-552 3-231 (276)
192 3no2_A Uncharacterized protein 99.6 2.3E-13 7.8E-18 129.7 28.0 242 227-533 4-262 (276)
193 1rwi_B Serine/threonine-protei 99.6 1E-13 3.4E-18 131.8 25.6 235 318-563 25-263 (270)
194 1rwi_B Serine/threonine-protei 99.6 1.1E-13 3.8E-18 131.5 24.9 239 277-525 25-266 (270)
195 2qc5_A Streptogramin B lactona 99.6 1.3E-11 4.5E-16 118.8 37.9 270 276-563 20-299 (300)
196 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 7.4E-13 2.5E-17 128.8 29.1 239 276-563 18-298 (314)
197 1yr2_A Prolyl oligopeptidase; 99.6 3.1E-13 1.1E-17 147.8 27.2 236 315-562 161-439 (741)
198 3dsm_A Uncharacterized protein 99.6 1.1E-12 3.7E-17 128.7 27.6 253 295-562 15-300 (328)
199 1qks_A Cytochrome CD1 nitrite 99.6 9E-12 3.1E-16 130.4 35.6 266 285-563 165-476 (567)
200 2mad_H Methylamine dehydrogena 99.6 2E-11 6.7E-16 121.5 35.9 246 280-530 70-357 (373)
201 2z2n_A Virginiamycin B lyase; 99.6 2.3E-11 7.9E-16 117.0 35.5 233 276-562 15-253 (299)
202 2qc5_A Streptogramin B lactona 99.6 4.4E-11 1.5E-15 115.1 37.3 275 216-522 19-299 (300)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 5.5E-12 1.9E-16 122.5 30.7 244 214-523 15-299 (314)
204 3sjl_D Methylamine dehydrogena 99.5 2.7E-12 9.2E-17 126.2 27.6 291 224-544 40-384 (386)
205 3g4e_A Regucalcin; six bladed 99.5 1.9E-11 6.4E-16 118.0 30.7 228 278-553 15-261 (297)
206 2mad_H Methylamine dehydrogena 99.5 1.4E-10 4.7E-15 115.4 36.9 263 284-563 29-349 (373)
207 3hrp_A Uncharacterized protein 99.5 1.9E-11 6.7E-16 123.3 30.8 237 276-562 131-408 (409)
208 1yr2_A Prolyl oligopeptidase; 99.5 3.1E-12 1E-16 140.0 25.8 238 277-526 164-444 (741)
209 2ghs_A AGR_C_1268P; regucalcin 99.5 1E-10 3.6E-15 114.3 31.4 226 278-555 51-293 (326)
210 3c75_H MADH, methylamine dehyd 99.4 8.2E-11 2.8E-15 117.8 27.3 264 238-531 99-410 (426)
211 1xip_A Nucleoporin NUP159; bet 99.4 5.4E-12 1.9E-16 124.6 18.4 181 318-551 39-231 (388)
212 3dr2_A Exported gluconolactona 99.4 8.6E-11 3E-15 113.8 26.5 230 277-561 46-303 (305)
213 2qe8_A Uncharacterized protein 99.4 1.8E-11 6.3E-16 120.7 20.3 257 276-555 17-312 (343)
214 3sjl_D Methylamine dehydrogena 99.4 1.4E-10 4.7E-15 114.0 25.9 267 283-563 40-362 (386)
215 1xip_A Nucleoporin NUP159; bet 99.4 1.3E-11 4.5E-16 121.8 18.4 165 277-453 39-225 (388)
216 3iuj_A Prolyl endopeptidase; h 99.4 2.2E-11 7.7E-16 131.9 22.1 235 315-562 127-403 (693)
217 3hrp_A Uncharacterized protein 99.4 2.8E-10 9.5E-15 114.8 28.5 237 217-521 131-408 (409)
218 3g4e_A Regucalcin; six bladed 99.4 6.1E-10 2.1E-14 107.3 29.0 226 215-511 11-260 (297)
219 3c75_H MADH, methylamine dehyd 99.3 2.1E-10 7.3E-15 114.8 25.1 263 286-563 83-401 (426)
220 3iuj_A Prolyl endopeptidase; h 99.3 7.5E-11 2.6E-15 127.8 23.5 243 213-526 125-408 (693)
221 3dr2_A Exported gluconolactona 99.3 3.9E-10 1.3E-14 109.1 24.6 234 207-515 35-299 (305)
222 2ghs_A AGR_C_1268P; regucalcin 99.3 2.4E-09 8.2E-14 104.6 30.4 221 218-511 50-290 (326)
223 2hz6_A Endoplasmic reticulum t 99.3 6.1E-14 2.1E-18 139.8 -4.7 256 286-562 8-277 (369)
224 3q7m_A Lipoprotein YFGL, BAMB; 99.3 1.2E-08 4.2E-13 101.7 32.3 303 227-561 52-375 (376)
225 2qe8_A Uncharacterized protein 99.3 4.3E-10 1.5E-14 110.8 21.0 269 217-520 17-318 (343)
226 1kb0_A Quinohemoprotein alcoho 99.2 1.7E-09 5.9E-14 116.2 26.5 253 286-549 127-535 (677)
227 3hxj_A Pyrrolo-quinoline quino 99.2 4.7E-10 1.6E-14 109.6 20.3 296 223-562 26-322 (330)
228 1yiq_A Quinohemoprotein alcoho 99.2 2.1E-09 7.1E-14 115.8 27.0 315 228-553 70-538 (689)
229 1kb0_A Quinohemoprotein alcoho 99.2 1.4E-09 4.8E-14 116.9 24.6 269 287-563 77-506 (677)
230 1mda_H Methylamine dehydrogena 99.2 9.5E-10 3.3E-14 108.3 20.5 246 280-544 69-367 (368)
231 1yiq_A Quinohemoprotein alcoho 99.2 2.6E-09 9E-14 115.0 25.7 269 287-563 70-504 (689)
232 2hz6_A Endoplasmic reticulum t 99.2 2.1E-11 7.3E-16 121.4 6.1 203 327-547 8-217 (369)
233 1npe_A Nidogen, entactin; glyc 99.1 4.4E-07 1.5E-11 85.6 31.0 248 288-546 2-263 (267)
234 3q7m_A Lipoprotein YFGL, BAMB; 99.1 1.1E-07 3.7E-12 94.8 28.0 260 287-563 53-336 (376)
235 1mda_H Methylamine dehydrogena 99.0 1.9E-08 6.4E-13 99.0 18.4 220 339-563 47-345 (368)
236 2ece_A 462AA long hypothetical 99.0 3.4E-07 1.2E-11 90.6 26.6 219 326-552 93-399 (462)
237 3hxj_A Pyrrolo-quinoline quino 98.9 1.1E-08 3.7E-13 99.8 15.1 254 283-561 27-281 (330)
238 4a2l_A BT_4663, two-component 98.9 3.1E-05 1E-09 85.2 44.3 314 216-562 214-569 (795)
239 4a2l_A BT_4663, two-component 98.9 3.6E-05 1.2E-09 84.6 44.2 309 217-561 263-611 (795)
240 1kv9_A Type II quinohemoprotei 98.9 2.1E-07 7.2E-12 99.8 24.7 269 287-563 66-487 (668)
241 1kv9_A Type II quinohemoprotei 98.9 6.3E-07 2.2E-11 96.1 26.6 314 228-553 66-521 (668)
242 2iwa_A Glutamine cyclotransfer 98.9 5.5E-07 1.9E-11 83.7 22.6 193 319-523 23-237 (266)
243 2ece_A 462AA long hypothetical 98.8 1.3E-06 4.3E-11 86.6 25.4 184 369-562 96-350 (462)
244 2ad6_A Methanol dehydrogenase 98.8 7.8E-06 2.7E-10 85.8 31.9 260 287-551 115-524 (571)
245 2ad6_A Methanol dehydrogenase 98.8 1.8E-06 6.2E-11 90.7 27.0 229 328-563 115-493 (571)
246 2fp8_A Strictosidine synthase; 98.8 2.9E-06 9.8E-11 82.4 26.7 236 278-563 21-312 (322)
247 2iwa_A Glutamine cyclotransfer 98.8 4.2E-06 1.4E-10 77.7 25.7 189 362-563 24-236 (266)
248 1w6s_A Methanol dehydrogenase 98.8 2.9E-06 9.8E-11 89.1 27.2 265 288-563 63-502 (599)
249 1npe_A Nidogen, entactin; glyc 98.8 2.4E-05 8.3E-10 73.5 31.0 223 329-562 2-236 (267)
250 3nol_A Glutamine cyclotransfer 98.7 2E-06 6.8E-11 79.0 21.8 180 319-512 45-244 (262)
251 1w6s_A Methanol dehydrogenase 98.7 8.9E-06 3E-10 85.4 29.0 256 290-553 124-536 (599)
252 2p4o_A Hypothetical protein; p 98.7 2.5E-05 8.6E-10 75.1 29.8 226 276-554 32-278 (306)
253 1fwx_A Nitrous oxide reductase 98.7 1.9E-06 6.6E-11 88.3 22.0 183 370-563 103-360 (595)
254 3v9f_A Two-component system se 98.7 0.00025 8.7E-09 77.6 40.8 314 217-561 211-565 (781)
255 3v9f_A Two-component system se 98.7 0.00026 8.8E-09 77.6 40.0 315 217-561 163-521 (781)
256 1flg_A Protein (quinoprotein e 98.6 7.9E-05 2.7E-09 78.2 33.7 264 287-553 117-549 (582)
257 1fwx_A Nitrous oxide reductase 98.6 2.6E-06 8.9E-11 87.4 20.7 217 326-553 99-407 (595)
258 3nok_A Glutaminyl cyclase; bet 98.6 7.3E-06 2.5E-10 75.2 20.9 178 319-511 57-253 (268)
259 2xbg_A YCF48-like protein; pho 98.6 0.00022 7.4E-09 69.2 33.0 265 276-560 36-318 (327)
260 2fp8_A Strictosidine synthase; 98.6 4.2E-05 1.4E-09 74.0 27.9 260 217-522 19-312 (322)
261 3mbr_X Glutamine cyclotransfer 98.6 2.1E-05 7.1E-10 71.6 23.4 180 318-511 22-222 (243)
262 3nok_A Glutaminyl cyclase; bet 98.6 3.2E-05 1.1E-09 71.0 24.4 178 362-553 58-254 (268)
263 1k3i_A Galactose oxidase precu 98.6 3.8E-06 1.3E-10 90.1 21.6 269 221-512 190-530 (656)
264 3nol_A Glutamine cyclotransfer 98.6 1.9E-05 6.4E-10 72.5 22.4 177 362-553 46-244 (262)
265 3v64_C Agrin; beta propeller, 98.5 0.00023 7.7E-09 69.7 31.7 242 278-530 36-282 (349)
266 1flg_A Protein (quinoprotein e 98.5 5.3E-05 1.8E-09 79.6 27.6 229 328-563 117-515 (582)
267 3mbr_X Glutamine cyclotransfer 98.5 0.00014 4.7E-09 66.2 25.7 179 361-553 23-223 (243)
268 3v65_B Low-density lipoprotein 98.4 0.00025 8.4E-09 70.5 29.5 241 280-531 81-326 (386)
269 2xe4_A Oligopeptidase B; hydro 98.4 3.3E-05 1.1E-09 84.1 24.3 193 214-426 170-394 (751)
270 1ijq_A LDL receptor, low-densi 98.4 0.0018 6E-08 62.3 33.7 225 297-530 10-245 (316)
271 3tc9_A Hypothetical hydrolase; 98.4 0.00038 1.3E-08 70.2 28.7 238 277-563 138-429 (430)
272 2xe4_A Oligopeptidase B; hydro 98.3 2.7E-05 9.3E-10 84.8 21.3 225 277-553 175-443 (751)
273 3qqz_A Putative uncharacterize 98.3 0.00084 2.9E-08 61.8 27.0 201 311-522 21-252 (255)
274 3p5b_L Low density lipoprotein 98.3 0.0026 9E-08 63.3 32.6 227 296-531 91-328 (400)
275 4hw6_A Hypothetical protein, I 98.3 0.00035 1.2E-08 70.5 25.6 235 277-563 140-432 (433)
276 3sov_A LRP-6, low-density lipo 98.2 0.0018 6.2E-08 62.2 29.5 226 296-530 12-245 (318)
277 1ijq_A LDL receptor, low-densi 98.2 0.0044 1.5E-07 59.5 31.5 213 337-561 9-235 (316)
278 1k3i_A Galactose oxidase precu 98.2 0.00015 5.1E-09 77.7 22.5 263 280-553 190-530 (656)
279 2xbg_A YCF48-like protein; pho 98.2 0.0057 1.9E-07 59.0 34.7 270 217-520 36-319 (327)
280 2p4o_A Hypothetical protein; p 98.2 0.0018 6E-08 62.0 27.7 213 217-450 32-263 (306)
281 3s94_A LRP-6, low-density lipo 98.2 0.0082 2.8E-07 63.3 34.6 327 217-562 40-421 (619)
282 3v64_C Agrin; beta propeller, 98.1 0.0048 1.6E-07 60.2 29.3 214 337-561 52-272 (349)
283 3v65_B Low-density lipoprotein 98.1 0.0031 1.1E-07 62.5 27.6 221 330-561 89-315 (386)
284 3p5b_L Low density lipoprotein 98.0 0.013 4.3E-07 58.3 30.7 221 330-561 85-317 (400)
285 3m0c_C LDL receptor, low-densi 98.0 0.0083 2.8E-07 64.9 31.0 226 296-530 403-639 (791)
286 3kya_A Putative phosphatase; s 97.9 0.011 3.6E-07 60.0 28.5 240 277-563 140-474 (496)
287 3amr_A 3-phytase; beta-propell 97.9 0.0083 2.9E-07 57.4 25.1 192 327-531 39-272 (355)
288 2ism_A Putative oxidoreductase 97.8 0.0054 1.9E-07 59.8 24.4 59 494-553 269-334 (352)
289 3amr_A 3-phytase; beta-propell 97.8 0.0041 1.4E-07 59.5 22.5 182 371-563 42-262 (355)
290 3sov_A LRP-6, low-density lipo 97.8 0.02 6.9E-07 54.8 27.4 214 337-561 12-235 (318)
291 2p9w_A MAL S 1 allergenic prot 97.8 0.0018 6.3E-08 61.4 18.8 157 397-563 10-214 (334)
292 3qqz_A Putative uncharacterize 97.7 0.014 4.7E-07 53.7 23.6 190 360-560 28-249 (255)
293 1n7d_A LDL receptor, low-densi 97.7 0.00027 9.4E-09 75.9 13.6 226 296-531 385-622 (699)
294 4hw6_A Hypothetical protein, I 97.7 0.0053 1.8E-07 61.7 22.2 98 464-561 242-371 (433)
295 4a0p_A LRP6, LRP-6, low-densit 97.6 0.093 3.2E-06 55.3 31.6 221 295-526 13-240 (628)
296 3m0c_C LDL receptor, low-densi 97.6 0.066 2.2E-06 57.9 30.1 215 336-561 402-629 (791)
297 3a9g_A Putative uncharacterize 97.5 0.041 1.4E-06 53.6 25.1 60 493-552 259-330 (354)
298 3tc9_A Hypothetical hydrolase; 97.5 0.0022 7.5E-08 64.6 16.2 152 401-563 138-300 (430)
299 3kya_A Putative phosphatase; s 97.5 0.12 4.1E-06 52.3 29.2 114 218-346 140-277 (496)
300 2g8s_A Glucose/sorbosone dehyd 97.4 0.11 3.7E-06 50.5 27.3 65 493-557 271-347 (353)
301 3s94_A LRP-6, low-density lipo 97.4 0.047 1.6E-06 57.5 25.3 223 296-527 17-247 (619)
302 3ei3_A DNA damage-binding prot 97.4 0.33 1.1E-05 55.0 38.6 321 216-563 553-954 (1158)
303 2p9w_A MAL S 1 allergenic prot 97.3 0.015 5.3E-07 55.1 17.9 187 363-559 17-260 (334)
304 1n7d_A LDL receptor, low-densi 97.1 0.0019 6.4E-08 69.4 11.3 215 336-561 384-611 (699)
305 3pbp_A Nucleoporin NUP82; beta 96.9 0.049 1.7E-06 53.3 18.0 133 379-519 41-208 (452)
306 2ism_A Putative oxidoreductase 96.9 0.32 1.1E-05 47.1 28.5 101 217-334 31-152 (352)
307 3sre_A PON1, serum paraoxonase 96.9 0.094 3.2E-06 50.7 19.9 153 403-563 53-251 (355)
308 3sre_A PON1, serum paraoxonase 96.8 0.19 6.6E-06 48.5 21.1 165 336-513 81-287 (355)
309 2xzh_A Clathrin heavy chain 1; 96.6 0.49 1.7E-05 44.6 31.7 208 324-541 74-309 (365)
310 2vpj_A Kelch-like protein 12; 96.3 0.31 1E-05 45.8 18.7 223 286-525 14-280 (301)
311 1bpo_A Protein (clathrin); cla 96.2 1 3.6E-05 44.1 32.3 210 324-543 73-310 (494)
312 4a0p_A LRP6, LRP-6, low-densit 96.1 1.7 5.7E-05 45.7 44.9 151 217-385 80-234 (628)
313 3a9g_A Putative uncharacterize 96.1 1.1 3.8E-05 43.3 26.0 101 217-334 29-152 (354)
314 1cru_A Protein (soluble quinop 95.9 0.96 3.3E-05 45.4 20.9 109 400-512 27-163 (454)
315 2vpj_A Kelch-like protein 12; 95.7 0.48 1.6E-05 44.5 17.2 210 338-562 31-276 (301)
316 2xn4_A Kelch-like protein 2; s 95.7 0.72 2.5E-05 43.3 18.4 222 287-525 16-278 (302)
317 3ii7_A Kelch-like protein 7; p 95.4 1.3 4.5E-05 41.5 19.1 221 288-525 13-274 (306)
318 2be1_A Serine/threonine-protei 95.1 2.2 7.5E-05 40.7 19.3 188 288-486 11-236 (339)
319 2be1_A Serine/threonine-protei 95.0 0.18 6.2E-06 48.3 11.4 195 329-528 11-236 (339)
320 2g8s_A Glucose/sorbosone dehyd 94.9 0.65 2.2E-05 44.9 15.6 145 401-551 19-215 (353)
321 4asc_A Kelch repeat and BTB do 94.9 2.6 8.9E-05 39.6 21.1 219 289-525 7-279 (315)
322 2xn4_A Kelch-like protein 2; s 94.8 1.4 4.9E-05 41.1 17.6 211 338-563 30-275 (302)
323 1xi4_A Clathrin heavy chain; a 94.8 2 6.9E-05 48.8 20.3 195 324-528 73-294 (1630)
324 3ii7_A Kelch-like protein 7; p 94.8 1.5 5.2E-05 41.0 17.7 217 330-563 14-271 (306)
325 3qhy_B Beta-lactamase inhibito 94.7 1.5 5.1E-05 40.8 16.8 220 277-523 25-246 (282)
326 3pbp_A Nucleoporin NUP82; beta 94.5 0.56 1.9E-05 45.9 13.5 124 218-343 67-208 (452)
327 1tl2_A L10, protein (tachylect 94.5 1.1 3.6E-05 39.8 14.0 139 401-557 42-203 (236)
328 1zgk_A Kelch-like ECH-associat 94.2 2.5 8.5E-05 39.7 17.5 224 285-525 23-289 (308)
329 4asc_A Kelch repeat and BTB do 93.9 3.2 0.00011 39.0 17.8 178 331-526 8-224 (315)
330 1cru_A Protein (soluble quinop 93.5 6.7 0.00023 39.2 27.9 102 318-419 28-163 (454)
331 2woz_A Kelch repeat and BTB do 93.4 5.2 0.00018 37.6 18.9 107 325-433 54-187 (318)
332 3ei3_A DNA damage-binding prot 93.3 13 0.00045 42.0 38.8 272 276-562 514-871 (1158)
333 1tl2_A L10, protein (tachylect 93.2 3.1 0.00011 36.8 14.5 100 402-516 90-203 (236)
334 3ott_A Two-component system se 93.1 11 0.00037 40.5 40.2 312 217-562 146-500 (758)
335 2xzh_A Clathrin heavy chain 1; 92.6 6.9 0.00024 36.9 29.5 233 283-523 74-332 (365)
336 2uvk_A YJHT; unknown function, 92.2 3.7 0.00013 39.3 15.6 91 286-378 19-128 (357)
337 1xi4_A Clathrin heavy chain; a 91.8 6.9 0.00024 44.6 18.3 233 283-523 73-331 (1630)
338 3ott_A Two-component system se 91.7 16 0.00056 39.1 43.8 266 275-561 145-445 (758)
339 2woz_A Kelch repeat and BTB do 91.6 8.9 0.0003 35.9 18.0 171 339-525 25-233 (318)
340 1zgk_A Kelch-like ECH-associat 91.1 6 0.0002 36.9 15.4 210 338-563 39-286 (308)
341 3sbq_A Nitrous-oxide reductase 90.8 0.43 1.5E-05 48.3 7.0 90 473-563 299-407 (638)
342 3das_A Putative oxidoreductase 89.9 14 0.00048 35.3 28.5 225 317-552 32-326 (347)
343 1uuj_A Platelet-activating fac 89.6 0.076 2.6E-06 38.8 0.4 32 7-38 11-42 (88)
344 2zwa_A Leucine carboxyl methyl 89.2 11 0.00036 40.1 16.9 190 327-526 397-638 (695)
345 1bpo_A Protein (clathrin); cla 88.8 19 0.00066 35.4 30.2 233 283-523 73-331 (494)
346 2uvk_A YJHT; unknown function, 88.5 6.9 0.00024 37.4 13.8 91 328-420 20-128 (357)
347 3qhy_B Beta-lactamase inhibito 88.1 16 0.00055 33.6 20.3 180 277-480 64-245 (282)
348 3s25_A Hypothetical 7-bladed b 87.1 19 0.00066 33.5 22.1 139 282-431 59-217 (302)
349 3s25_A Hypothetical 7-bladed b 87.0 20 0.00067 33.5 25.7 235 285-552 23-280 (302)
350 2wg3_C Hedgehog-interacting pr 86.2 29 0.00099 34.6 24.4 104 318-421 15-160 (463)
351 2zwa_A Leucine carboxyl methyl 85.6 23 0.00078 37.6 16.9 148 285-432 396-579 (695)
352 3sbq_A Nitrous-oxide reductase 83.8 2.7 9.4E-05 42.6 7.9 93 459-552 332-453 (638)
353 3das_A Putative oxidoreductase 83.6 31 0.0011 32.8 29.4 108 215-335 30-158 (347)
354 4hvt_A Ritya.17583.B, post-pro 79.2 69 0.0024 33.9 20.8 217 324-553 137-415 (711)
355 4a9v_A PHOX; hydrolase, beta-p 63.3 35 0.0012 34.9 9.8 59 494-552 477-549 (592)
356 4gq2_M Nucleoporin NUP120; bet 62.1 12 0.00042 41.3 7.0 38 494-531 237-274 (950)
357 3zwu_A Alkaline phosphatase PH 61.6 32 0.0011 35.4 9.5 58 494-551 477-548 (592)
358 2l1n_A Uncharacterized protein 55.9 4 0.00014 31.1 1.2 19 4-25 18-36 (120)
359 2dk5_A DNA-directed RNA polyme 55.5 3.2 0.00011 30.8 0.7 50 3-60 17-67 (91)
360 2wg3_C Hedgehog-interacting pr 54.9 1.7E+02 0.0058 29.0 27.1 51 277-327 15-79 (463)
361 4gq2_M Nucleoporin NUP120; bet 52.0 18 0.00061 40.0 6.1 37 401-437 237-273 (950)
362 3f7f_A Nucleoporin NUP120; nuc 50.8 26 0.00089 36.9 6.7 37 494-532 223-259 (729)
363 3b7f_A Glycosyl hydrolase, BNR 50.8 1.7E+02 0.0059 27.8 24.6 75 276-351 55-151 (394)
364 4fhn_B Nucleoporin NUP120; pro 50.0 12 0.00042 42.3 4.5 38 494-531 239-276 (1139)
365 3b7f_A Glycosyl hydrolase, BNR 47.9 1.9E+02 0.0065 27.5 24.7 51 288-338 23-77 (394)
366 2d68_A FOP, FGFR1OP; alpha hel 44.7 4.9 0.00017 29.0 0.1 29 9-37 21-49 (82)
367 3f7f_A Nucleoporin NUP120; nuc 40.2 39 0.0013 35.5 6.1 35 401-437 223-257 (729)
368 4fhn_B Nucleoporin NUP120; pro 39.4 20 0.00069 40.6 4.1 37 401-437 239-275 (1139)
369 2jp7_A MRNA export factor MEX6 37.7 4.9 0.00017 26.7 -0.7 30 14-52 25-56 (57)
370 2zux_A YESW protein; beta-prop 32.1 4.2E+02 0.014 26.9 19.9 42 315-356 177-247 (591)
371 3qph_A TRMB, A global transcri 31.0 19 0.00064 34.3 1.8 45 11-62 21-65 (342)
372 3uc1_A DNA gyrase subunit A; D 30.3 3.4E+02 0.012 25.3 11.4 102 460-562 107-226 (327)
373 4a9v_A PHOX; hydrolase, beta-p 26.8 2.4E+02 0.0081 28.8 9.0 38 473-510 510-548 (592)
374 3zwu_A Alkaline phosphatase PH 24.7 3E+02 0.01 28.3 9.5 38 473-510 510-548 (592)
375 3eyi_A Z-DNA-binding protein 1 23.6 27 0.00093 23.9 1.0 43 10-59 12-55 (72)
376 1xkm_A Distinctin chain A; por 21.0 65 0.0022 16.4 1.8 15 43-57 3-19 (26)
377 1oyi_A Double-stranded RNA-bin 20.4 19 0.00065 25.9 -0.3 50 5-62 14-63 (82)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.4e-52 Score=422.78 Aligned_cols=297 Identities=29% Similarity=0.505 Sum_probs=261.1
Q ss_pred eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
...+.+|..+|++++|+|++.+|++|+.|++|+|||+.++... ... ..|...|++++|+|+|+
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~-------------~~l----~~h~~~V~~v~~~~~~~ 163 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-------------RTL----KGHTDSVQDISFDHSGK 163 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC-------------EEE----CCCSSCEEEEEECTTSS
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-------------EEE----eccCCcEEEEEEcCCCC
Confidence 3467899999999999999999999999999999999876421 111 23567899999999999
Q ss_pred EEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467 289 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 367 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (564)
+|++|+.||.|++|+..+ .....+.+|..+|.+++|+|++++|++|+.|++|++||++++.+
T Consensus 164 ~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~----------------- 226 (410)
T 1vyh_C 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC----------------- 226 (410)
T ss_dssp EEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-----------------
T ss_pred EEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-----------------
Confidence 999999999999999864 56678899999999999999999999999999999999987643
Q ss_pred CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEE
Q 008467 368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 447 (564)
Q Consensus 368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i 447 (564)
+..+.+|...|.+++|+|++.+|++|+.|++|++||+.++.+...+..|...|.++
T Consensus 227 ------------------------~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~ 282 (410)
T 1vyh_C 227 ------------------------VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 282 (410)
T ss_dssp ------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred ------------------------EEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEE
Confidence 34566788999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCC-----------CCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008467 448 RWSPTGSGT-----------NNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM 516 (564)
Q Consensus 448 ~~~p~~~~~-----------~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i 516 (564)
+|+|++... .......+|++|+.|++|++||+++++++..+.+|..+|++++|+|+|++|++|+.||.|
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i 362 (410)
T 1vyh_C 283 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 362 (410)
T ss_dssp EECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEE
T ss_pred EEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 999964210 000012379999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 517 HIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 517 ~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
++||+.+++++.++.++ ..|.+++|+|++.+||+|+.|+.|+||++|
T Consensus 363 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 363 RVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 99999999998888765 469999999999999999999999999986
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.1e-46 Score=399.32 Aligned_cols=332 Identities=23% Similarity=0.353 Sum_probs=280.0
Q ss_pred CceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC
Q 008467 207 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 286 (564)
Q Consensus 207 ~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 286 (564)
....++.+|...|++++|+|+|++||||+.|++|+|||+.++... . .... ..+...|.+++|+|+
T Consensus 50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~--------~---~~~~----~~~~~~v~~v~fs~d 114 (611)
T 1nr0_A 50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI--------L---KTTI----PVFSGPVKDISWDSE 114 (611)
T ss_dssp SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC--------E---EEEE----ECSSSCEEEEEECTT
T ss_pred ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce--------e---eEee----cccCCceEEEEECCC
Confidence 345678999999999999999999999999999999998654211 0 1111 234578999999999
Q ss_pred CCEEEEEeCC----CeEEEEECCCceeEeecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCcceeEEEeecccCe
Q 008467 287 GTLLATGSYD----GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 361 (564)
Q Consensus 287 g~~l~sg~~d----g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 361 (564)
|++|++++.+ +.|++|+. +.....+.+|..+|.+++|+|++. .|++|+.|++|++||..++++...+..|...+
T Consensus 115 g~~l~~~~~~~~~~~~v~~wd~-~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V 193 (611)
T 1nr0_A 115 SKRIAAVGEGRERFGHVFLFDT-GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV 193 (611)
T ss_dssp SCEEEEEECCSSCSEEEEETTT-CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCE
T ss_pred CCEEEEEECCCCceeEEEEeeC-CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCce
Confidence 9999999875 48999985 445567889999999999999987 59999999999999999999888999999999
Q ss_pred EEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEec-------CCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 008467 362 LDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFA-------GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 433 (564)
Q Consensus 362 ~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~-------~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~ 433 (564)
.++.|.++ ..+++++.|+.|++|+...+.++..+. +|.+.|.+++|+|++++|++|+.|++|++||+.++++
T Consensus 194 ~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~ 273 (611)
T 1nr0_A 194 HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV 273 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Confidence 99999765 568899999999999999888888774 8999999999999999999999999999999987765
Q ss_pred ee-------------------------------------------ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008467 434 VH-------------------------------------------DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF 470 (564)
Q Consensus 434 ~~-------------------------------------------~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~ 470 (564)
+. .+.+|...|++++|+|++. +|++++.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~---------~l~s~s~ 344 (611)
T 1nr0_A 274 EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK---------TLFSADA 344 (611)
T ss_dssp EEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---------EEEEEET
T ss_pred eeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC---------EEEEEeC
Confidence 43 3347888999999999875 7899999
Q ss_pred CCeEEEEeCCCCeEEEEE-e------------------------------------------------------------
Q 008467 471 DSTVKLWDVELGKLLYSL-N------------------------------------------------------------ 489 (564)
Q Consensus 471 dg~i~iwd~~~~~~~~~~-~------------------------------------------------------------ 489 (564)
|++|++||+.++++...+ .
T Consensus 345 D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 424 (611)
T 1nr0_A 345 EGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD 424 (611)
T ss_dssp TSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS
T ss_pred CCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCc
Confidence 999999998766543221 0
Q ss_pred ---------------------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--EEEEecCCCEEEEEEccCCC
Q 008467 490 ---------------------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI--VKTYTGNGGIFEVCWNKEGD 546 (564)
Q Consensus 490 ---------------------~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~--~~~~~~~~~i~~~~w~~~g~ 546 (564)
.|...+.+++|+|||++||+|+.|++|++|++.++.+ +........|.+++|+|+|+
T Consensus 425 ~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~ 504 (611)
T 1nr0_A 425 IAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA 504 (611)
T ss_dssp CEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS
T ss_pred EEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCC
Confidence 1234578899999999999999999999999988754 34434456799999999999
Q ss_pred EEEEEEcCCcEEEEEee
Q 008467 547 KIAACFANHTVCVLDFR 563 (564)
Q Consensus 547 ~la~~~~~~~v~v~~~~ 563 (564)
+||+++.|++|.+||+.
T Consensus 505 ~las~s~d~~v~~w~~~ 521 (611)
T 1nr0_A 505 FLVATDQSRKVIPYSVA 521 (611)
T ss_dssp EEEEEETTSCEEEEEGG
T ss_pred EEEEEcCCCCEEEEEcC
Confidence 99999999999999974
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.1e-46 Score=367.22 Aligned_cols=289 Identities=22% Similarity=0.395 Sum_probs=255.3
Q ss_pred eEccCCccceEEEEECCC----CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC
Q 008467 210 TILEGHTSEVCACAWSPA----GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 285 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~----~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 285 (564)
..+.+|.+.|.+++|+|+ +.+|+||+.|++|+||++.++.. ..... ...|...|.+++|++
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-----------~~~~~----l~gh~~~v~~~~~~~ 90 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-----------DLQWS----LEGHQLGVVSVDISH 90 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-----------EEEEE----ECCCSSCEEEEEECS
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-----------eeeee----eccCCCCEEEEEECC
Confidence 456799999999999985 56999999999999999865321 11111 234567899999999
Q ss_pred CCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEE
Q 008467 286 EGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 364 (564)
Q Consensus 286 ~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 364 (564)
++.++++|+.||.|++||.. +.....+..|...+.+++|+|++++|++|+.|++|++||+.++...
T Consensus 91 ~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~------------- 157 (321)
T 3ow8_A 91 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE------------- 157 (321)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEE-------------
T ss_pred CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCcee-------------
Confidence 99999999999999999975 5566778889999999999999999999999999999999875432
Q ss_pred EcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccE
Q 008467 365 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI 444 (564)
Q Consensus 365 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i 444 (564)
..+..|...|.+++|+|++++||+|+.||.|++||+.+++.+..+.+|..+|
T Consensus 158 ----------------------------~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v 209 (321)
T 3ow8_A 158 ----------------------------YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 209 (321)
T ss_dssp ----------------------------EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCC
T ss_pred ----------------------------EEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCce
Confidence 2345577789999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 008467 445 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 524 (564)
Q Consensus 445 ~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~ 524 (564)
.+++|+|++. +|++|+.|++|++||+++++.+..+.+|...|.+++|+|+|++|++|+.|++|+|||+.++
T Consensus 210 ~~l~~spd~~---------~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~ 280 (321)
T 3ow8_A 210 RSLTFSPDSQ---------LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR 280 (321)
T ss_dssp CEEEECTTSC---------EEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred eEEEEcCCCC---------EEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence 9999999875 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 525 KIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 525 ~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
+++.++.++ ..|.+++|+|+|++|++++.|+.|.|||+-
T Consensus 281 ~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 281 TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999998764 579999999999999999999999999963
No 4
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-46 Score=380.72 Aligned_cols=337 Identities=27% Similarity=0.517 Sum_probs=292.7
Q ss_pred cCCccceEEEEECCCCC-EEEEEECCCcEEEEeC----CCCCCCCCCCCCCceEEEEEeec-c--ccccCCCCeEEEEEC
Q 008467 213 EGHTSEVCACAWSPAGS-LLASGSGDSTARIWTI----ADGTSNGGAQNGPLNVLVLKHVK-G--RTNEKSKDVTTLDWN 284 (564)
Q Consensus 213 ~~h~~~V~~~~~sp~~~-~lasgs~D~~i~iW~~----~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~V~~l~~s 284 (564)
..|...|.+++|+|+++ +||+|+.|+.|++|++ .++...... .....+.+.. . ....+...|++++|+
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 117 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKL----TIIAELRHPFALSASSGKTTNQVTCLAWS 117 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEE----EEEEEEECCCCCC------CBCEEEEEEC
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccc----cccccccccccccccccCCCCceEEEEEc
Confidence 34568999999999999 9999999999999999 655411000 0001111100 0 011245689999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccC----
Q 008467 285 GEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP---- 360 (564)
Q Consensus 285 ~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~---- 360 (564)
|++++|++|+.||.|++|+..+.....+..|..+|.+++|+|++++|++++.|+.|++||+.+++....+..+...
T Consensus 118 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 197 (425)
T 1r5m_A 118 HDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI 197 (425)
T ss_dssp TTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence 9999999999999999999888888899999999999999999999999999999999999999988888777665
Q ss_pred -----------eEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008467 361 -----------TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 429 (564)
Q Consensus 361 -----------~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~ 429 (564)
+..+.|.++..+++++.++.|++|++....++..+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 277 (425)
T 1r5m_A 198 NAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG 277 (425)
T ss_dssp --------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred eeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 778888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 008467 430 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 509 (564)
Q Consensus 430 ~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~las 509 (564)
+++.+..+..|...|.+++|+|++ ++++++.||.|++||+++++.+..+..|..+|.+++|+|+|++|++
T Consensus 278 ~~~~~~~~~~~~~~i~~~~~~~~~----------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 347 (425)
T 1r5m_A 278 NGNSQNCFYGHSQSIVSASWVGDD----------KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAV 347 (425)
T ss_dssp SBSCSEEECCCSSCEEEEEEETTT----------EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEE
T ss_pred CCccceEecCCCccEEEEEECCCC----------EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEE
Confidence 999888999999999999999975 5889999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEeCCCCe--------------------EEEEEecC--C-CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 510 GSLDKSMHIWSLKEGK--------------------IVKTYTGN--G-GIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 510 gs~dg~i~iw~~~~~~--------------------~~~~~~~~--~-~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
|+.||.|++|++.+++ ++..+..+ + .|.+++|+|+|++|++++.||.|.|||++
T Consensus 348 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 348 AFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 9999999999999888 88888776 5 89999999999999999999999999985
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.5e-45 Score=364.93 Aligned_cols=286 Identities=23% Similarity=0.388 Sum_probs=252.7
Q ss_pred ceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467 208 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 287 (564)
Q Consensus 208 ~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 287 (564)
....|.+|...|.+++|+|++++|++|+.||+|+|||+.++... ... ..+...|.+++|+|+|
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~-------------~~~----~~~~~~v~~~~~s~~~ 109 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV-------------HAI----PLRSSWVMTCAYAPSG 109 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE-------------EEE----ECSSSCEEEEEECTTS
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcc-------------eEe----ecCCccEEEEEECCCC
Confidence 45678999999999999999999999999999999998765321 111 1245679999999999
Q ss_pred CEEEEEeCCCeEEEEECCC-----ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeE
Q 008467 288 TLLATGSYDGQARIWSTNG-----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 362 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~~-----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 362 (564)
++|++|+.|+.+++|+... .....+.+|.+.|.++.|++++ .+++++.|++|++||+.++..
T Consensus 110 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~------------ 176 (340)
T 1got_B 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQ------------ 176 (340)
T ss_dssp SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEE------------
T ss_pred CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcE------------
Confidence 9999999999999999753 2445678999999999999876 489999999999999987542
Q ss_pred EEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccc
Q 008467 363 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK 442 (564)
Q Consensus 363 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~ 442 (564)
+..+.+|.+.|.+++|+|++++|++|+.|++|++||++++.++..+.+|..
T Consensus 177 -----------------------------~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~ 227 (340)
T 1got_B 177 -----------------------------TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227 (340)
T ss_dssp -----------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS
T ss_pred -----------------------------EEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcC
Confidence 345678999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467 443 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSPTGEYLASGSLDKSMHIWS 520 (564)
Q Consensus 443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~i~~~~~spdg~~lasgs~dg~i~iw~ 520 (564)
.|.+++|+|++. +|++|+.||+|++||+++++.+..+.. +..+|++++|+|+|++|++|+.||.|++||
T Consensus 228 ~v~~v~~~p~~~---------~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd 298 (340)
T 1got_B 228 DINAICFFPNGN---------AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298 (340)
T ss_dssp CEEEEEECTTSS---------EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CEEEEEEcCCCC---------EEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEE
Confidence 999999999875 799999999999999999988877653 335799999999999999999999999999
Q ss_pred CCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 521 LKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 521 ~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
+.+++.+..+.++ ..|.+++|+|+|++||+|+.|+.|+|||
T Consensus 299 ~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999998888765 5699999999999999999999999997
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.9e-45 Score=392.47 Aligned_cols=335 Identities=19% Similarity=0.323 Sum_probs=272.7
Q ss_pred eeEccCCccceEEEEECCCCC-EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467 209 VTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 287 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~~-~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 287 (564)
...+.+|...|++++|+|++. +|++|+.|++|++|+..+++. ... ...|...|.+++|+|+|
T Consensus 140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~-------------~~~----l~~H~~~V~~v~fspdg 202 (611)
T 1nr0_A 140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF-------------KST----FGEHTKFVHSVRYNPDG 202 (611)
T ss_dssp CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE-------------EEE----ECCCSSCEEEEEECTTS
T ss_pred cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeE-------------eee----eccccCceEEEEECCCC
Confidence 346789999999999999986 699999999999999754321 111 23456789999999999
Q ss_pred CEEEEEeCCCeEEEEECC-CceeEeec-------CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeec--
Q 008467 288 TLLATGSYDGQARIWSTN-GDLKCTLS-------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH-- 357 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~-~~~~~~~~-------~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-- 357 (564)
++|++|+.||.|++|+.. +.....+. +|.++|++++|+|++++|++++.|++|++||+.++++...+..+
T Consensus 203 ~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~ 282 (611)
T 1nr0_A 203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR 282 (611)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCC
Confidence 999999999999999964 55555553 79999999999999999999999999999999999888777543
Q ss_pred -ccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeee
Q 008467 358 -SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 436 (564)
Q Consensus 358 -~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~ 436 (564)
......+.| ....+++++.|+.+++|+...+.+...+.+|...|++++|+|+|++|++++.|++|++||+.++.....
T Consensus 283 ~~~~~~~~~~-~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 283 IEDQQLGIIW-TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV 361 (611)
T ss_dssp GGGCEEEEEE-CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC
T ss_pred ccceeEEEEE-cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeee
Confidence 234556667 556788999999999999998888889999999999999999999999999999999999987765544
Q ss_pred c-ccccccEEEEEEccCCC-------------------------------------------------------------
Q 008467 437 L-REHSKEIYTIRWSPTGS------------------------------------------------------------- 454 (564)
Q Consensus 437 ~-~~~~~~i~~i~~~p~~~------------------------------------------------------------- 454 (564)
+ ..|...|.+++|++++.
T Consensus 362 ~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~ 441 (611)
T 1nr0_A 362 FPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 441 (611)
T ss_dssp SSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE
T ss_pred cccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCc
Confidence 3 23444444444332110
Q ss_pred ------------CCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467 455 ------------GTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 520 (564)
Q Consensus 455 ------------~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~ 520 (564)
...+|+. .+|++|+.|++|++||+..+.. +.. .+|...|++++|||||++||+++.|++|++|+
T Consensus 442 ~~~~~~~~~v~~va~spdg-~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~ 519 (611)
T 1nr0_A 442 LTEVPISYNSSCVALSNDK-QFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYS 519 (611)
T ss_dssp EEEEECSSCEEEEEECTTS-CEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeeeecCCCceEEEEeCCC-CEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEE
Confidence 0011222 2789999999999999987654 234 67999999999999999999999999999999
Q ss_pred CCC-CeEEEE--Ee-cCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 521 LKE-GKIVKT--YT-GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 521 ~~~-~~~~~~--~~-~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
+.+ +++... +. +...|.+++|+|||++||+|+.|++|+|||+.
T Consensus 520 ~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~ 566 (611)
T 1nr0_A 520 VANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN 566 (611)
T ss_dssp GGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred cCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECC
Confidence 987 666543 23 45679999999999999999999999999974
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.8e-45 Score=355.46 Aligned_cols=290 Identities=23% Similarity=0.352 Sum_probs=249.7
Q ss_pred eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
..++.+|...|.+++|+|++++||+|+.||+|+|||+.++.. +... ..+...|.+++|+|+++
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~-------------~~~~----~~~~~~v~~~~~~~~~~ 68 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE-------------VRSI----QVTETPVRAGKFIARKN 68 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-------------EEEE----ECCSSCEEEEEEEGGGT
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce-------------eEEe----eccCCcEEEEEEeCCCC
Confidence 467889999999999999999999999999999999876531 1111 23456799999999999
Q ss_pred EEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467 289 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 367 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (564)
+|++|+.|+.|++|+.. +.....+.+|.+.|.+++|+|++.+|++|+.|++|++||++++..
T Consensus 69 ~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~----------------- 131 (304)
T 2ynn_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA----------------- 131 (304)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE-----------------
T ss_pred EEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc-----------------
Confidence 99999999999999975 567778999999999999999999999999999999999876421
Q ss_pred CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeeeeecc-cccccEE
Q 008467 368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHSKEIY 445 (564)
Q Consensus 368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~-~~~~~i~ 445 (564)
....+.+|...|.+++|+| ++.+|++|+.|++|++||+.+......+. .|...+.
T Consensus 132 -----------------------~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~ 188 (304)
T 2ynn_A 132 -----------------------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188 (304)
T ss_dssp -----------------------EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEE
T ss_pred -----------------------hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEE
Confidence 2245678999999999999 67899999999999999998776655554 4567899
Q ss_pred EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467 446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 525 (564)
Q Consensus 446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~ 525 (564)
.+.|+|.... .+|++|+.|++|++||+++++++.++.+|...|.+++|+|++++|++|+.||+|++||+.+++
T Consensus 189 ~~~~~~~~~~-------~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 189 YVDYYPLPDK-------PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp EEEECCSTTC-------CEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred EEEEEEcCCC-------CEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 9999885321 279999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecC-CCEEEEEEccCCC--EEEEEEcCCcEEEEEee
Q 008467 526 IVKTYTGN-GGIFEVCWNKEGD--KIAACFANHTVCVLDFR 563 (564)
Q Consensus 526 ~~~~~~~~-~~i~~~~w~~~g~--~la~~~~~~~v~v~~~~ 563 (564)
+++++..+ ..+.+++|+|+|. ++|+|+.|| +.+|++.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~ 301 (304)
T 2ynn_A 262 VEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLG 301 (304)
T ss_dssp EEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC
T ss_pred eeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEec
Confidence 99998764 5789999999985 578887664 6677653
No 8
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.3e-44 Score=384.26 Aligned_cols=324 Identities=31% Similarity=0.551 Sum_probs=290.0
Q ss_pred CCceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC
Q 008467 206 NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 285 (564)
Q Consensus 206 ~~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 285 (564)
...+..+.+|...|.+++|+|++++|++++.|+.+++|+.... ..... ..+...|++++|+|
T Consensus 252 ~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~--------------~~~~~----~~h~~~v~~~~~~~ 313 (577)
T 2ymu_A 252 GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ--------------LLQTL----TGHSSSVWGVAFSP 313 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--------------EEEEE----CCCSSCEEEEEECT
T ss_pred CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc--------------EEEEE----ecCCCCeEEEEECC
Confidence 3445678899999999999999999999999999999996421 11112 23567899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEE
Q 008467 286 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 365 (564)
Q Consensus 286 ~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (564)
++.+|++++.||.|++|+..+.....+.+|..+|.+++|+|++++|++++.|+++++||. +++....+..|...+.++.
T Consensus 314 ~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~ 392 (577)
T 2ymu_A 314 DGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA 392 (577)
T ss_dssp TSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEE
Confidence 999999999999999999998888889999999999999999999999999999999995 5677788888999999999
Q ss_pred cCCC-ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccE
Q 008467 366 WRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI 444 (564)
Q Consensus 366 ~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i 444 (564)
|.++ ..+++++.|+.|++|+. +.+.+..+.+|...|.+++|+|++++|++++.|++|++||. +++.+..+..|...|
T Consensus 393 ~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v 470 (577)
T 2ymu_A 393 FSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 470 (577)
T ss_dssp ECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCE
T ss_pred ECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCE
Confidence 8755 56788999999999996 45678889999999999999999999999999999999996 456778889999999
Q ss_pred EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 008467 445 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 524 (564)
Q Consensus 445 ~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~ 524 (564)
.+++|+|++. +|++++.|++|++||. +++++..+.+|..+|++++|+|||++||+|+.||.|++||. ++
T Consensus 471 ~~~~~spd~~---------~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~ 539 (577)
T 2ymu_A 471 RGVAFSPDGQ---------TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG 539 (577)
T ss_dssp EEEEECTTSC---------EEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TS
T ss_pred EEEEEcCCCC---------EEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CC
Confidence 9999999875 7999999999999995 58889999999999999999999999999999999999996 67
Q ss_pred eEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 525 KIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 525 ~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
+++.++.++ +.|.+++|+|||++|++++.|++|+|||
T Consensus 540 ~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 540 QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 888888765 5699999999999999999999999997
No 9
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.1e-44 Score=362.06 Aligned_cols=287 Identities=24% Similarity=0.419 Sum_probs=256.1
Q ss_pred ceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467 208 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 287 (564)
Q Consensus 208 ~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 287 (564)
....|.+|...|++++|+|++++||||+.|++|+|||..++... ... ..+...|.+++|+|+|
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~-------------~~~----~~~~~~v~~~~~sp~g 118 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE-------------HAV----TMPCTWVMACAYAPSG 118 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-------------EEE----ECSSSCCCEEEECTTS
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcc-------------eEE----ecCCCCEEEEEECCCC
Confidence 45678999999999999999999999999999999998754311 111 1234679999999999
Q ss_pred CEEEEEeCCCeEEEEECCC-------ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccC
Q 008467 288 TLLATGSYDGQARIWSTNG-------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP 360 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~~-------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~ 360 (564)
.+|++|+.|+.+++|+... .....+..|.+.|.++.|+|++.+|++++.|++|++||+.+++.+..+..|...
T Consensus 119 ~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~ 198 (354)
T 2pbi_B 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGAD 198 (354)
T ss_dssp SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC
Confidence 9999999999999998642 234567789999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCC---CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeec
Q 008467 361 TLDVDWRN---NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 437 (564)
Q Consensus 361 ~~~~~~~~---~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~ 437 (564)
+..+.+.. ...+++++.|+.|++|++.+++++..+.+|...|++++|+|++.+|++|+.|++|++||++..+.+..+
T Consensus 199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~ 278 (354)
T 2pbi_B 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY 278 (354)
T ss_dssp EEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 98888754 368999999999999999999999999999999999999999999999999999999999988877665
Q ss_pred ccc--cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 008467 438 REH--SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS 515 (564)
Q Consensus 438 ~~~--~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~ 515 (564)
..+ ...+.+++|+|++. +|++|+.|++|++||+.+++.+..+.+|..+|++++|+|||++||+|+.||+
T Consensus 279 ~~~~~~~~~~~~~~s~~g~---------~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~ 349 (354)
T 2pbi_B 279 SKESIIFGASSVDFSLSGR---------LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHT 349 (354)
T ss_dssp CCTTCCSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred cCCCcccceeEEEEeCCCC---------EEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCC
Confidence 533 34789999999875 7999999999999999999999999999999999999999999999999999
Q ss_pred EEEEe
Q 008467 516 MHIWS 520 (564)
Q Consensus 516 i~iw~ 520 (564)
|+||+
T Consensus 350 v~vW~ 354 (354)
T 2pbi_B 350 LRVWA 354 (354)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99996
No 10
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.5e-43 Score=348.85 Aligned_cols=289 Identities=27% Similarity=0.469 Sum_probs=249.3
Q ss_pred eEccCCccceEEEEECCCC-CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 210 TILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~~-~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
..|.+|.+.|++++|+|++ ++|+||+.|++|++|++...... ....+... ..|...|++++|+|+|+
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~--------~~~~~~~~----~~h~~~v~~~~~s~dg~ 78 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK--------FGVPVRSF----KGHSHIVQDCTLTADGA 78 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE--------EEEEEEEE----ECCSSCEEEEEECTTSS
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc--------ccccceEE----eCCcccEEEEEECCCCC
Confidence 4688999999999999975 89999999999999998532110 00111222 34567899999999999
Q ss_pred EEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467 289 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 367 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (564)
+|++|+.||.|++||.. +.....+.+|..+|.+++|+|++.+|++|+.|++|++||++..
T Consensus 79 ~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~------------------- 139 (319)
T 3frx_A 79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ------------------- 139 (319)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-------------------
T ss_pred EEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------------------
Confidence 99999999999999975 5667788999999999999999999999999999999998532
Q ss_pred CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC------CCEEEEEeCCCcEEEEeCCCCeeeeeccccc
Q 008467 368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT------GSLLASCSDDVTAKIWNMKQDKYVHDLREHS 441 (564)
Q Consensus 368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~------~~~las~s~dg~i~iwd~~~~~~~~~~~~~~ 441 (564)
.+..+.+|...|.+++|+|. +.+|++++.|++|++||+++.+....+.+|.
T Consensus 140 -----------------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~ 196 (319)
T 3frx_A 140 -----------------------CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN 196 (319)
T ss_dssp -----------------------EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCC
T ss_pred -----------------------eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCC
Confidence 22345678889999999985 4589999999999999999999999999999
Q ss_pred ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467 442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 521 (564)
Q Consensus 442 ~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~ 521 (564)
..|.+++|+|++. +|++|+.||+|+|||+.+++++..+..+ .+|.+++|+|+|.+|++++.++ +++|++
T Consensus 197 ~~v~~~~~sp~g~---------~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~-i~v~~~ 265 (319)
T 3frx_A 197 SNINTLTASPDGT---------LIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATG-IKVFSL 265 (319)
T ss_dssp SCEEEEEECTTSS---------EEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETTE-EEEEEE
T ss_pred CcEEEEEEcCCCC---------EEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCCC-cEEEEe
Confidence 9999999999875 7999999999999999999999988855 6899999999999999988665 999999
Q ss_pred CCCeEEEEEec---------CCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 522 KEGKIVKTYTG---------NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 522 ~~~~~~~~~~~---------~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
..+.++..+.. ...+.+++|+|||++|++|+.|+.|+|||+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 266 DPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp TTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred CcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 98887777643 3458899999999999999999999999985
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.3e-44 Score=359.38 Aligned_cols=293 Identities=20% Similarity=0.303 Sum_probs=234.5
Q ss_pred CCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEE
Q 008467 214 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 293 (564)
Q Consensus 214 ~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg 293 (564)
.|...|.+++|+|||++|++++ |+++|+||........ ....+... .......+...|.+++|+|++ .|++|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~v~~~~~s~d~-~l~~~ 99 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKD-PCAAPNEG-----FCSAGVQTEAGVADLTWVGER-GILVA 99 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESS-GGGTTCGG-----GCSEEEEESSCEEEEEEETTT-EEEEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeecc-ccccCCcc-----eeeeeeccCCCEEEEEEeCCC-eEEEE
Confidence 4667899999999999999887 8888999732100000 00000000 000001124569999999985 67899
Q ss_pred eCCCeEEEEECCC-ce----eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC
Q 008467 294 SYDGQARIWSTNG-DL----KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 368 (564)
Q Consensus 294 ~~dg~i~vw~~~~-~~----~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 368 (564)
+.||.|+|||... +. ...+.+|.+.|++++|+|+|++|++|+.|++|++||+.+++
T Consensus 100 s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~------------------- 160 (344)
T 4gqb_B 100 SDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV------------------- 160 (344)
T ss_dssp ETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-------------------
T ss_pred ECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-------------------
Confidence 9999999999753 22 22456899999999999999999999999999999998754
Q ss_pred CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeeeeecc--cccccEE
Q 008467 369 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDLR--EHSKEIY 445 (564)
Q Consensus 369 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~las~s~dg~i~iwd~~~~~~~~~~~--~~~~~i~ 445 (564)
++..+.+|.+.|++++|+|++. +|++|+.|++|++||++++++...+. .|...+.
T Consensus 161 ----------------------~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 218 (344)
T 4gqb_B 161 ----------------------VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPT 218 (344)
T ss_dssp ----------------------EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEE
T ss_pred ----------------------EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccce
Confidence 3456778999999999999984 78999999999999999998887764 4556789
Q ss_pred EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC
Q 008467 446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEG 524 (564)
Q Consensus 446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg-~~lasgs~dg~i~iw~~~~~ 524 (564)
+++|+|.+. .+|++|+.||+|+|||+++++++.++.+|..+|++++|+|+| ++||+|+.|++|+|||+.++
T Consensus 219 ~~~~~p~~~--------~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 219 SLAWHPQQS--------EVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS 290 (344)
T ss_dssp EEEECSSCT--------TEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred eeeecCCCC--------cceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence 999998653 278999999999999999999999999999999999999998 68999999999999999999
Q ss_pred eEEEEEecCCCEEEEEEccCCC-EEEEEEcCCcEEEEEee
Q 008467 525 KIVKTYTGNGGIFEVCWNKEGD-KIAACFANHTVCVLDFR 563 (564)
Q Consensus 525 ~~~~~~~~~~~i~~~~w~~~g~-~la~~~~~~~v~v~~~~ 563 (564)
+++....+.+.|++++|+|+|+ .|++|+.|++|.+|++.
T Consensus 291 ~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 291 ELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp EEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred cEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 8876544456799999999986 67789999999999975
No 12
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.9e-44 Score=354.42 Aligned_cols=294 Identities=29% Similarity=0.527 Sum_probs=244.7
Q ss_pred eeEccCCcc-ceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467 209 VTILEGHTS-EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 287 (564)
Q Consensus 209 ~~~l~~h~~-~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 287 (564)
+..+.+|.. .|.+++|+|+|++||+|+.|++|+||++.++.. ..... ....|...|++++|+|+|
T Consensus 8 ~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~------------~~~~~--~~~~h~~~v~~~~~sp~g 73 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW------------ICKSV--LSEGHQRTVRKVAWSPCG 73 (345)
T ss_dssp EEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE------------EEEEE--ECSSCSSCEEEEEECTTS
T ss_pred eeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc------------eeeee--eccccCCcEEEEEECCCC
Confidence 456789988 999999999999999999999999999865421 00100 112456789999999999
Q ss_pred CEEEEEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEE
Q 008467 288 TLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 364 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 364 (564)
++|++|+.|+.+++|+.... ....+.+|..+|.+++|+|++++|++|+.|++|++||+.++...
T Consensus 74 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~------------- 140 (345)
T 3fm0_A 74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY------------- 140 (345)
T ss_dssp SEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCE-------------
T ss_pred CEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCe-------------
Confidence 99999999999999997643 45678899999999999999999999999999999998764311
Q ss_pred EcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe--eeeecccccc
Q 008467 365 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK--YVHDLREHSK 442 (564)
Q Consensus 365 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~ 442 (564)
..+..+.+|...|.+++|+|++++|++|+.|++|++||..++. +...+.+|..
T Consensus 141 -------------------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~ 195 (345)
T 3fm0_A 141 -------------------------ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHES 195 (345)
T ss_dssp -------------------------EEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSS
T ss_pred -------------------------EEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCC
Confidence 1234567899999999999999999999999999999998775 4567889999
Q ss_pred cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC---------------CeEEEEEeC-CCCCEEEEEEcCCCCE
Q 008467 443 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL---------------GKLLYSLNG-HREPVYSLAFSPTGEY 506 (564)
Q Consensus 443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~---------------~~~~~~~~~-h~~~i~~~~~spdg~~ 506 (564)
.|++++|+|++. +|++|+.|++|+|||... .+++..+.+ |...|++++|+|++.+
T Consensus 196 ~v~~l~~sp~g~---------~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 266 (345)
T 3fm0_A 196 TVWSLAFDPSGQ---------RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGA 266 (345)
T ss_dssp CEEEEEECTTSS---------EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCC
T ss_pred ceEEEEECCCCC---------EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCE
Confidence 999999999875 799999999999999632 134556655 8889999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCe--------EEEE-Ee-cCCCEEEEEEccCC-CEEEEEEcCCcEEEEEee
Q 008467 507 LASGSLDKSMHIWSLKEGK--------IVKT-YT-GNGGIFEVCWNKEG-DKIAACFANHTVCVLDFR 563 (564)
Q Consensus 507 lasgs~dg~i~iw~~~~~~--------~~~~-~~-~~~~i~~~~w~~~g-~~la~~~~~~~v~v~~~~ 563 (564)
||+++.|+.|++|+...+. +... .. +...|.+++|+|++ .+||+|+.||+|+||+++
T Consensus 267 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 267 LATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334 (345)
T ss_dssp EEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred EEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEec
Confidence 9999999999999987542 1111 12 24579999999998 599999999999999985
No 13
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.6e-44 Score=359.82 Aligned_cols=288 Identities=19% Similarity=0.312 Sum_probs=239.5
Q ss_pred cCCccceEEEEECCCCCEEEEEEC------CCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC
Q 008467 213 EGHTSEVCACAWSPAGSLLASGSG------DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 286 (564)
Q Consensus 213 ~~h~~~V~~~~~sp~~~~lasgs~------D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 286 (564)
.+|...|++++|||||++||+||. |+.+++|+..++...... ......+...|++++|+|+
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~-------------~~~~~~~~~~V~~~~~s~d 105 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESL-------------CTAGVQTEAGVTDVAWVSE 105 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGG-------------CSEEEECSSCEEEEEEETT
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeE-------------ecccCCCCCCEEEEEEcCC
Confidence 469999999999999999999998 778999987665422111 0111234567999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCc-e----eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCe
Q 008467 287 GTLLATGSYDGQARIWSTNGD-L----KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 361 (564)
Q Consensus 287 g~~l~sg~~dg~i~vw~~~~~-~----~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 361 (564)
+.+ ++++.||.|+|||.... . .....+|.++|++++|+|++++|++|+.|++|++||+++++.
T Consensus 106 ~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~----------- 173 (357)
T 4g56_B 106 KGI-LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV----------- 173 (357)
T ss_dssp TEE-EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEE-----------
T ss_pred CCE-EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE-----------
Confidence 865 56788999999997532 1 234458999999999999999999999999999999887543
Q ss_pred EEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeeeeec--c
Q 008467 362 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDL--R 438 (564)
Q Consensus 362 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~las~s~dg~i~iwd~~~~~~~~~~--~ 438 (564)
+..+.+|...|++++|+|++. ++++++.|++|++||+++++++..+ .
T Consensus 174 ------------------------------~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~ 223 (357)
T 4g56_B 174 ------------------------------LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC 223 (357)
T ss_dssp ------------------------------EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT
T ss_pred ------------------------------EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec
Confidence 345678999999999999885 7899999999999999988876544 3
Q ss_pred cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCC-CEEEEEeCCCcEE
Q 008467 439 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMH 517 (564)
Q Consensus 439 ~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg-~~lasgs~dg~i~ 517 (564)
.|...+.+++|+|++. .+|++|+.|+.|++||+++++++..+.+|..+|++++|+|++ ++||+|+.||+|+
T Consensus 224 ~~~~~v~~v~~sp~~~--------~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~ 295 (357)
T 4g56_B 224 ASDTIPTSVTWHPEKD--------DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVA 295 (357)
T ss_dssp TCCSCEEEEEECTTST--------TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEE
T ss_pred cccccccchhhhhccc--------ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 5677899999999753 278999999999999999999999999999999999999997 6899999999999
Q ss_pred EEeCCCCeEEEEEecCCCEEEEEEcc-CCCEEEEEEcCCcEEEEEee
Q 008467 518 IWSLKEGKIVKTYTGNGGIFEVCWNK-EGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 518 iw~~~~~~~~~~~~~~~~i~~~~w~~-~g~~la~~~~~~~v~v~~~~ 563 (564)
|||+++++++..+.+...|++++|+| ++++||+|+.|++|+|||+.
T Consensus 296 iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 296 VLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 99999999988877677899999998 89999999999999999984
No 14
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=7.8e-45 Score=367.07 Aligned_cols=291 Identities=25% Similarity=0.476 Sum_probs=253.7
Q ss_pred eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
..+|.+|.+.|++++|+|++++||||+.|++|+|||+.++.. .... ..+...|.+++|+|+|+
T Consensus 59 ~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~-------------~~~~----~~h~~~v~~~~~s~~g~ 121 (380)
T 3iz6_a 59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK-------------THAI----KLHCPWVMECAFAPNGQ 121 (380)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-------------EEEE----ECCCTTCCCCEECTTSS
T ss_pred eecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-------------ceEE----ecCCCCEEEEEECCCCC
Confidence 467899999999999999999999999999999999876531 1111 23456799999999999
Q ss_pred EEEEEeCCCeEEEEECCCc--------eeEeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCcceeEEE-----
Q 008467 289 LLATGSYDGQARIWSTNGD--------LKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQF----- 354 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~~~--------~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~----- 354 (564)
+|++|+.|+.+++|+.... ....+.+|.+.|.++.|+|++ ..|++|+.|++|++||+.++..+..+
T Consensus 122 ~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~ 201 (380)
T 3iz6_a 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFP 201 (380)
T ss_dssp EEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSS
T ss_pred EEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccC
Confidence 9999999999999997531 334678999999999999974 57999999999999999999888776
Q ss_pred eecccCeEEEEcC--CCceEEEEeCCCeEEEEEcC-CCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008467 355 EFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 431 (564)
Q Consensus 355 ~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~ 431 (564)
..|...+..+.|. +...|++++.|+.|++|++. ...++..+.+|.+.|++++|+|++++|++|+.||+|++||++++
T Consensus 202 ~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~ 281 (380)
T 3iz6_a 202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG 281 (380)
T ss_dssp SSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT
T ss_pred CCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC
Confidence 4577788888885 45789999999999999997 45788899999999999999999999999999999999999999
Q ss_pred eeeeeccccc-------ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE----eCCCCCEEEEEE
Q 008467 432 KYVHDLREHS-------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL----NGHREPVYSLAF 500 (564)
Q Consensus 432 ~~~~~~~~~~-------~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~----~~h~~~i~~~~~ 500 (564)
..+..+..+. ..|.+++|+|++. +|++|+.||.|++||+..++.+..+ .+|...|++++|
T Consensus 282 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---------~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~ 352 (380)
T 3iz6_a 282 HQLQVYNREPDRNDNELPIVTSVAFSISGR---------LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL 352 (380)
T ss_dssp EEEEEECCCCSSSCCSSCSCSEEEECSSSS---------EEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEE
T ss_pred cEEEEecccccccccccCceEEEEECCCCC---------EEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEE
Confidence 8887765443 2488999999886 7899999999999999999988877 689999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467 501 SPTGEYLASGSLDKSMHIWSLKEGK 525 (564)
Q Consensus 501 spdg~~lasgs~dg~i~iw~~~~~~ 525 (564)
+|||++||+||.||+|+||++..++
T Consensus 353 s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 353 SSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCCCEEEEeeCCCCEEEEecCCCc
Confidence 9999999999999999999997653
No 15
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-43 Score=349.99 Aligned_cols=295 Identities=25% Similarity=0.418 Sum_probs=235.7
Q ss_pred eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
+..+.+|..+|.+++|+|+ +||+|+.|++|+||++..+.. . ..... ....|...|.+++|+|+++
T Consensus 7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~---------~--~~~~~--~~~~h~~~v~~v~~sp~~~ 71 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF---------T--LIDVL--DETAHKKAIRSVAWRPHTS 71 (330)
T ss_dssp EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC---------E--EEEEE--CTTCCCSCEEEEEECTTSS
T ss_pred ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe---------E--EEEEE--ecCCccCCEEEEEECCCCC
Confidence 4578899999999999998 999999999999999865321 0 01111 0112567899999999999
Q ss_pred EEEEEeCCCeEEEEECC--------CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccC
Q 008467 289 LLATGSYDGQARIWSTN--------GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP 360 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~--------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~ 360 (564)
+|++|+.|+.|+||+.. ......+.+|..+|.+++|+|++++|++|+.|++|++||++....
T Consensus 72 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~---------- 141 (330)
T 2hes_X 72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE---------- 141 (330)
T ss_dssp EEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC----------
T ss_pred EEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC----------
Confidence 99999999999999973 234567889999999999999999999999999999999853210
Q ss_pred eEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC--eeeeecc
Q 008467 361 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD--KYVHDLR 438 (564)
Q Consensus 361 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~--~~~~~~~ 438 (564)
...++..+.+|...|.+++|+|++.+|++|+.|++|++||..++ .++..+.
T Consensus 142 ---------------------------~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~ 194 (330)
T 2hes_X 142 ---------------------------EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN 194 (330)
T ss_dssp ---------------------------CCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC
T ss_pred ---------------------------CeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc
Confidence 01234567889999999999999999999999999999998766 5778899
Q ss_pred cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--------eEEEEEeC-CCCCEEEEEEcCCCCEEEE
Q 008467 439 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--------KLLYSLNG-HREPVYSLAFSPTGEYLAS 509 (564)
Q Consensus 439 ~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--------~~~~~~~~-h~~~i~~~~~spdg~~las 509 (564)
+|...|.+++|+|++.. .+|++|+.|++|++||+..+ .+...+.+ |..+|++++|+|++ +||+
T Consensus 195 ~h~~~v~~~~~~~~~~~-------~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s 266 (330)
T 2hes_X 195 GHEGTVWSSDFDKTEGV-------FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIAS 266 (330)
T ss_dssp CCSSCEEEEEECCSSSS-------CEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEE
T ss_pred CCCCcEEEEEecCCCCe-------eEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEE
Confidence 99999999999997421 26899999999999998754 34555555 88999999999765 8999
Q ss_pred EeCCCcEEEEeCCCCe--EEEEE-ecCC--CEEEEEEcc--CCCEEEEEEcCCcEEEEEee
Q 008467 510 GSLDKSMHIWSLKEGK--IVKTY-TGNG--GIFEVCWNK--EGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 510 gs~dg~i~iw~~~~~~--~~~~~-~~~~--~i~~~~w~~--~g~~la~~~~~~~v~v~~~~ 563 (564)
|+.||.|+||+..+++ ..... .++. .|..++|+| ++++||+|+.||.|+|||++
T Consensus 267 ~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 267 VGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp EETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred EeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence 9999999999998874 33333 3333 699999999 78999999999999999985
No 16
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.2e-42 Score=371.09 Aligned_cols=324 Identities=31% Similarity=0.563 Sum_probs=287.3
Q ss_pred CceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC
Q 008467 207 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 286 (564)
Q Consensus 207 ~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 286 (564)
.....+.+|...|.+++|+|++++|++|+.|+.+++|+.... .+... ..+...|++++|+|+
T Consensus 212 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~--------------~~~~~----~~~~~~v~~v~~~~d 273 (577)
T 2ymu_A 212 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--------------LLQTL----TGHSSSVNGVAFRPD 273 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC--------------EEEEE----CCCSSCEEEEEECTT
T ss_pred cEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCC--------------EEEEE----ecCCCCEEEEEEcCC
Confidence 345677899999999999999999999999999999995421 11111 234678999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc
Q 008467 287 GTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 366 (564)
Q Consensus 287 g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 366 (564)
++.|++++.|+.|++|+.++.....+.+|..+|++++|+|++.+|++++.|++|++||+.... ...+..|...+..+.+
T Consensus 274 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-~~~~~~~~~~v~~~~~ 352 (577)
T 2ymu_A 274 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-LQTLTGHSSSVWGVAF 352 (577)
T ss_dssp SSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-EEEECCCSSCEEEEEE
T ss_pred CCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-eEEEeCCCCCEEEEEE
Confidence 999999999999999999999888999999999999999999999999999999999986544 4566778888888988
Q ss_pred CCC-ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEE
Q 008467 367 RNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 445 (564)
Q Consensus 367 ~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~ 445 (564)
.++ ..+++++.|+.+++|+. +++.+..+.+|...|++++|+|++++|++++.|+.|++||. +++.+..+..|...|+
T Consensus 353 s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~ 430 (577)
T 2ymu_A 353 SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVW 430 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEE
T ss_pred CCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeE
Confidence 654 56788999999999995 45678889999999999999999999999999999999995 5667788899999999
Q ss_pred EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467 446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 525 (564)
Q Consensus 446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~ 525 (564)
+++|+|++. +|++++.|++|++||. +++.+..+.+|..+|++++|+|||++||+++.|+.|++|+. +++
T Consensus 431 ~~~~s~d~~---------~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~ 499 (577)
T 2ymu_A 431 GVAFSPDDQ---------TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQ 499 (577)
T ss_dssp EEEECTTSS---------EEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSC
T ss_pred EEEECCCCC---------EEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCC
Confidence 999999875 7999999999999996 47888899999999999999999999999999999999995 678
Q ss_pred EEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 526 IVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 526 ~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
+++.+.++ ..|.+++|+|+|++||+++.|+.|+|||.
T Consensus 500 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 500 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred EEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence 88888765 56999999999999999999999999984
No 17
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=9.1e-42 Score=337.83 Aligned_cols=321 Identities=17% Similarity=0.258 Sum_probs=277.3
Q ss_pred CccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 008467 215 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 294 (564)
Q Consensus 215 h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~ 294 (564)
|..+|.+++|+|+|++++++..++.+.+|..... ...... ..|...|++++|+|++++|++++
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~------------~~~~~~-----~~h~~~v~~~~~~~~~~~l~~~~ 70 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH------------ARQINT-----LNHGEVVCAVTISNPTRHVYTGG 70 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSE------------EEEEEE-----ECCSSCCCEEEECSSSSEEEEEC
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCc------------ccccee-----ccCCCceEEEEEecCCcEEEEcC
Confidence 4578999999999999999887777666643221 111111 13567899999999999999999
Q ss_pred CCCeEEEEECCCc----eeEeec--CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc--eeEEEeecccCeEEEEc
Q 008467 295 YDGQARIWSTNGD----LKCTLS--KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSGPTLDVDW 366 (564)
Q Consensus 295 ~dg~i~vw~~~~~----~~~~~~--~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~ 366 (564)
||.|++|+.... ....+. .|..+|.+++|+|++++|++++.|+.|++||+.+++ ....+..+...+..+.|
T Consensus 71 -dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~ 149 (337)
T 1gxr_A 71 -KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI 149 (337)
T ss_dssp -BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEE
T ss_pred -CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEE
Confidence 999999997542 222233 799999999999999999999999999999999887 55566778888999999
Q ss_pred CCC-ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEE
Q 008467 367 RNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 445 (564)
Q Consensus 367 ~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~ 445 (564)
.++ ..+++++.|+.|++|++...+++..+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+ .+...+.
T Consensus 150 ~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~ 228 (337)
T 1gxr_A 150 SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIF 228 (337)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEE
T ss_pred CCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-cCCCceE
Confidence 754 57788999999999999999999999999999999999999999999999999999999999887765 4778899
Q ss_pred EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467 446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 525 (564)
Q Consensus 446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~ 525 (564)
+++|+|++. +|++++.|+.|++||+.+++. ..+..|..+|.+++|+|+|++|++++.||.|++|++.+++
T Consensus 229 ~~~~s~~~~---------~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 229 SLGYCPTGE---------WLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp EEEECTTSS---------EEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EEEECCCCC---------EEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence 999999875 788999999999999998775 4677899999999999999999999999999999999999
Q ss_pred EEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEeeC
Q 008467 526 IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 564 (564)
Q Consensus 526 ~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~~ 564 (564)
.+........+.+++|+|+|++|++++.||.|.||++.+
T Consensus 299 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 337 (337)
T 1gxr_A 299 SIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVIY 337 (337)
T ss_dssp EEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEEC
T ss_pred EEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEeC
Confidence 887777778899999999999999999999999999864
No 18
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=8.4e-42 Score=346.50 Aligned_cols=298 Identities=26% Similarity=0.479 Sum_probs=242.5
Q ss_pred CCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEee-ccccccCCCCeEEEEECCCCCEEEE
Q 008467 214 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHV-KGRTNEKSKDVTTLDWNGEGTLLAT 292 (564)
Q Consensus 214 ~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~V~~l~~s~~g~~l~s 292 (564)
+|...|++++|+|+|++||+|+ |+.++||++.++................... ..........|++++|+|+|++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999976 7899999998765321111000000000000 0000112335999999999999999
Q ss_pred EeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCce
Q 008467 293 GSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 371 (564)
Q Consensus 293 g~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (564)
|+.||.|++||.. +.....+.+|..+|.+++|+|++.+|++|+.|++|++||+++++....+
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~----------------- 203 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL----------------- 203 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----------------
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE-----------------
Confidence 9999999999986 4566788999999999999999999999999999999999886543221
Q ss_pred EEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeeeeec-------cccccc
Q 008467 372 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDL-------REHSKE 443 (564)
Q Consensus 372 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~-------~~~~~~ 443 (564)
.+...+.+++|+| ++++|++|+.|++|++||+.++..+..+ .+|...
T Consensus 204 -------------------------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~ 258 (393)
T 1erj_A 204 -------------------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS 258 (393)
T ss_dssp -------------------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSC
T ss_pred -------------------------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCC
Confidence 1344688999999 8999999999999999999998877666 578999
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC------------CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 008467 444 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------------GKLLYSLNGHREPVYSLAFSPTGEYLASGS 511 (564)
Q Consensus 444 i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~------------~~~~~~~~~h~~~i~~~~~spdg~~lasgs 511 (564)
|++++|+|++. +|++|+.|++|++||+++ +.+...+.+|...|.+++|+|++.+|++|+
T Consensus 259 v~~v~~~~~g~---------~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs 329 (393)
T 1erj_A 259 VYSVVFTRDGQ---------SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 329 (393)
T ss_dssp EEEEEECTTSS---------EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE
T ss_pred EEEEEECCCCC---------EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe
Confidence 99999999875 789999999999999975 345667889999999999999999999999
Q ss_pred CCCcEEEEeCCCCeEEEEEecC-CCEEEEEEcc------CCCEEEEEEcCCcEEEEEee
Q 008467 512 LDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNK------EGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 512 ~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~------~g~~la~~~~~~~v~v~~~~ 563 (564)
.||.|++||+.+++.+..+.++ ..|.+++|++ +++.||+|+.|+.|+||+++
T Consensus 330 ~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 330 KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 9999999999999999888765 4699999886 68999999999999999986
No 19
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2e-41 Score=332.51 Aligned_cols=288 Identities=29% Similarity=0.545 Sum_probs=249.4
Q ss_pred eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
...+.+|...|++++|+|++++||+|+.|+.+++|++.++... ... ..+...|.+++|+|+++
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~-------------~~~----~~h~~~v~~~~~~~~~~ 78 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------------KTI----SGHKLGISDVAWSSDSN 78 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-------------EEE----CCCSSCEEEEEECTTSS
T ss_pred EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccc-------------hhh----ccCCCceEEEEEcCCCC
Confidence 4577899999999999999999999999999999998765321 111 23567899999999999
Q ss_pred EEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467 289 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 367 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (564)
+|++|+.||.|++|+.. +.....+.+|...|.++.|+|++++|++|+.|++|++||+++++.
T Consensus 79 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----------------- 141 (312)
T 4ery_A 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC----------------- 141 (312)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-----------------
T ss_pred EEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE-----------------
Confidence 99999999999999975 556778899999999999999999999999999999999987543
Q ss_pred CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecc-cccccEEE
Q 008467 368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHSKEIYT 446 (564)
Q Consensus 368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~-~~~~~i~~ 446 (564)
+..+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+. .+...+..
T Consensus 142 ------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 197 (312)
T 4ery_A 142 ------------------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 197 (312)
T ss_dssp ------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEE
T ss_pred ------------------------EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEE
Confidence 23456788899999999999999999999999999999988776654 45678999
Q ss_pred EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEE---EEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 008467 447 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY---SLAFSPTGEYLASGSLDKSMHIWSLKE 523 (564)
Q Consensus 447 i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~---~~~~spdg~~lasgs~dg~i~iw~~~~ 523 (564)
++|+|++. +|++++.||.|++||+++++++..+.+|...+. .....+++.+|++|+.||.|++||+.+
T Consensus 198 ~~~~~~~~---------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 268 (312)
T 4ery_A 198 VKFSPNGK---------YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 268 (312)
T ss_dssp EEECTTSS---------EEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT
T ss_pred EEECCCCC---------EEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC
Confidence 99999875 789999999999999999999999988876433 233447889999999999999999999
Q ss_pred CeEEEEEecC-CCEEEEEEccCCCEEEEEE--cCCcEEEEEee
Q 008467 524 GKIVKTYTGN-GGIFEVCWNKEGDKIAACF--ANHTVCVLDFR 563 (564)
Q Consensus 524 ~~~~~~~~~~-~~i~~~~w~~~g~~la~~~--~~~~v~v~~~~ 563 (564)
++++..+.++ ..|..++|+|+++.||+++ .|+.|.||+..
T Consensus 269 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 269 KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred chhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9999998865 4689999999999999987 58999999864
No 20
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.4e-41 Score=339.67 Aligned_cols=280 Identities=20% Similarity=0.385 Sum_probs=252.8
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc---
Q 008467 273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE--- 348 (564)
Q Consensus 273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~--- 348 (564)
.|...|++++|+|++.+|++|+.||.|++|+.. +.....+..|...|.+++|+|+|.+|++|+.|+.+++|++...
T Consensus 62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~ 141 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE 141 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc
Confidence 356789999999999999999999999999964 5566678889999999999999999999999999999998643
Q ss_pred ---ceeEEEeecccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC--CCCEEEEEeCCCc
Q 008467 349 ---EWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP--TGSLLASCSDDVT 422 (564)
Q Consensus 349 ---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~~~las~s~dg~ 422 (564)
.....+..|...+..+.|.++ ..+++++.|++|++|++..++++..+.+|...|.+++|+| ++++|++|+.||+
T Consensus 142 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~ 221 (354)
T 2pbi_B 142 NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKK 221 (354)
T ss_dssp CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSC
T ss_pred cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCe
Confidence 344567788889999999765 4789999999999999999999999999999999999987 5789999999999
Q ss_pred EEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC--CCCEEEEEE
Q 008467 423 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH--REPVYSLAF 500 (564)
Q Consensus 423 i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~i~~~~~ 500 (564)
|++||+++++++..+..|...|.+++|+|++. +|++|+.|++|++||++.++.+..+..+ ...+.+++|
T Consensus 222 v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~---------~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (354)
T 2pbi_B 222 AMVWDMRSGQCVQAFETHESDVNSVRYYPSGD---------AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDF 292 (354)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred EEEEECCCCcEEEEecCCCCCeEEEEEeCCCC---------EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEE
Confidence 99999999999999999999999999999875 7999999999999999998887776543 357899999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 501 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 501 spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
+|+|++|++|+.|+.|++||+.+++.+..+.++ ..|.+++|+|+|++||+|+.|+.|+||+
T Consensus 293 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 293 SLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred eCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999999988888764 5699999999999999999999999996
No 21
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-44 Score=367.10 Aligned_cols=324 Identities=20% Similarity=0.380 Sum_probs=276.2
Q ss_pred ccceEEEEECCCCC-EEEEE----------ECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEEC
Q 008467 216 TSEVCACAWSPAGS-LLASG----------SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 284 (564)
Q Consensus 216 ~~~V~~~~~sp~~~-~lasg----------s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s 284 (564)
...|.+++|+|+++ +||+| +.|+.|+||++.++..... .....+...|++++|+
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~---------------~~~~~~~~~v~~~~~s 76 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP---------------IASLQVDSKFNDLDWS 76 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC---------------SCCCCCSSCEEEEEEC
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE---------------EEEEecCCceEEEEEC
Confidence 35688999999986 99999 8999999999976532100 0011245679999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCC-----ceeEeecCCCCCEEEEEeCCC-CCEEEEeeCCCcEEEEECCCcc------eeE
Q 008467 285 GEGTLLATGSYDGQARIWSTNG-----DLKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEE------WKQ 352 (564)
Q Consensus 285 ~~g~~l~sg~~dg~i~vw~~~~-----~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~~~~------~~~ 352 (564)
|++.+|++|+.||.|++|+... .....+.+|..+|.+++|+|+ +++|++++.|++|++||+.++. ...
T Consensus 77 ~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 156 (416)
T 2pm9_A 77 HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPL 156 (416)
T ss_dssp SSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCB
T ss_pred CCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccc
Confidence 9999999999999999999865 467788899999999999998 8999999999999999998876 222
Q ss_pred ---EEeecccCeEEEEcCCC--ceEEEEeCCCeEEEEEcCCCceeeEecCC------CcceEEEEECCCC-CEEEEEeCC
Q 008467 353 ---QFEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGH------QGEVNCVKWDPTG-SLLASCSDD 420 (564)
Q Consensus 353 ---~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h------~~~i~~v~~~~~~-~~las~s~d 420 (564)
.+..|...+.++.|.++ ..+++++.|+.|++|++...+++..+..| ...|.+++|+|++ .+|++++.|
T Consensus 157 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 236 (416)
T 2pm9_A 157 TPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGS 236 (416)
T ss_dssp CCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECC
T ss_pred ccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECC
Confidence 23557778889999765 67899999999999999999988888876 7889999999997 689999999
Q ss_pred C---cEEEEeCCCC-eeeeecc-cccccEEEEEEcc-CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCC
Q 008467 421 V---TAKIWNMKQD-KYVHDLR-EHSKEIYTIRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP 494 (564)
Q Consensus 421 g---~i~iwd~~~~-~~~~~~~-~~~~~i~~i~~~p-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~ 494 (564)
+ .|++||+++. .++..+. .|...|.+++|+| ++. +|++++.||+|++||+++++.+..+.+|..+
T Consensus 237 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~---------~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~ 307 (416)
T 2pm9_A 237 DNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH---------LLLSSGRDNTVLLWNPESAEQLSQFPARGNW 307 (416)
T ss_dssp SSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSS---------CEEEEESSSEEEEECSSSCCEEEEEECSSSC
T ss_pred CCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCC---------eEEEEeCCCCEEEeeCCCCccceeecCCCCc
Confidence 9 9999999986 6677777 8999999999999 554 6899999999999999999999999999999
Q ss_pred EEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeEEEEE---------------e---------------------cCCCEE
Q 008467 495 VYSLAFSPTG-EYLASGSLDKSMHIWSLKEGKIVKTY---------------T---------------------GNGGIF 537 (564)
Q Consensus 495 i~~~~~spdg-~~lasgs~dg~i~iw~~~~~~~~~~~---------------~---------------------~~~~i~ 537 (564)
|++++|+|++ .+|++++.||.|++|++.+++..... . ....+.
T Consensus 308 v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (416)
T 2pm9_A 308 CFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSP 387 (416)
T ss_dssp CCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSC
T ss_pred eEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCcc
Confidence 9999999999 89999999999999999876532111 0 123456
Q ss_pred EEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 538 EVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 538 ~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
.++|+|+|++||+++.|+.|.||++.
T Consensus 388 ~~~~s~dg~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 388 AAHWAFGGKLVQITPDGKGVSITNPK 413 (416)
T ss_dssp CCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred ceEEeeCCeEEEEeCCCCeEEEEEec
Confidence 89999999999999999999999874
No 22
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.9e-42 Score=342.36 Aligned_cols=294 Identities=22% Similarity=0.334 Sum_probs=238.5
Q ss_pred ceeEccCCccceEEEEE-----CC-CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEE
Q 008467 208 DVTILEGHTSEVCACAW-----SP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL 281 (564)
Q Consensus 208 ~~~~l~~h~~~V~~~~~-----sp-~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 281 (564)
...+|.||...|++++| +| ++++|+||+.|++|+||++.+...... . ...... ...|...|+++
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~-----~-~~~~~~----l~~h~~~V~~~ 82 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY-----F-GIPHKA----LTGHNHFVSDL 82 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB-----S-EEEEEE----ECCCSSCEEEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc-----c-ccccch----hccCCCceEEE
Confidence 34678999999999999 77 899999999999999999875432110 0 011111 23456789999
Q ss_pred EECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEe---ec
Q 008467 282 DWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE---FH 357 (564)
Q Consensus 282 ~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---~~ 357 (564)
+|+|++.++++|+.||.|++||.. +.....+.+|..+|.+++|+|++++|++++.|++|++||+.... ..... .|
T Consensus 83 ~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~ 161 (343)
T 2xzm_R 83 ALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENH 161 (343)
T ss_dssp EECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSC
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCC
Confidence 999999999999999999999975 56677889999999999999999999999999999999997433 22222 46
Q ss_pred ccCeEEEEcCCC-----------ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEE
Q 008467 358 SGPTLDVDWRNN-----------VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 426 (564)
Q Consensus 358 ~~~~~~~~~~~~-----------~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iw 426 (564)
...+.++.|.+. ..+++++.|+.|++|+. .......+.+|...|++++|+|+|++|++|+.||+|++|
T Consensus 162 ~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iw 240 (343)
T 2xzm_R 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240 (343)
T ss_dssp SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEE
Confidence 667888888654 46899999999999994 456677889999999999999999999999999999999
Q ss_pred eCCCC-eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE--EEe-----------CCC
Q 008467 427 NMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY--SLN-----------GHR 492 (564)
Q Consensus 427 d~~~~-~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~-----------~h~ 492 (564)
|+... .....+ .+...|.+++|+|++. +++ ++.|+.|++||+.+++... .+. +|.
T Consensus 241 d~~~~~~~~~~~-~~~~~v~~v~~sp~~~---------~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (343)
T 2xzm_R 241 DILNLTYPQREF-DAGSTINQIAFNPKLQ---------WVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKN 309 (343)
T ss_dssp ESSCCSSCSEEE-ECSSCEEEEEECSSSC---------EEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSC
T ss_pred ECCCCcccceee-cCCCcEEEEEECCCCC---------EEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCC
Confidence 99543 333333 3556799999999864 454 5568899999998765432 443 678
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 008467 493 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 524 (564)
Q Consensus 493 ~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~ 524 (564)
..|++++|+|+|++||+|+.||.|++|++.++
T Consensus 310 ~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 310 PQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 88999999999999999999999999998654
No 23
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.6e-41 Score=332.91 Aligned_cols=293 Identities=25% Similarity=0.383 Sum_probs=247.0
Q ss_pred eEccCCccceEEEEECCC-CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 210 TILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~-~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
.+|+||.+.|++++|+|+ +++|||||.|++|+|||+.+..... ....... ..|...|++++|+|+|+
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~--------~~~~~~l----~~h~~~V~~~~~s~dg~ 99 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY--------GIPQRAL----RGHSHFVSDVVISSDGQ 99 (340)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS--------EEEEEEE----CCCSSCEEEEEECTTSS
T ss_pred EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc--------ceeeEEE----eCCCCCEEEEEECCCCC
Confidence 468999999999999998 6899999999999999997653211 1111222 24567899999999999
Q ss_pred EEEEEeCCCeEEEEECCCc-eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCccee-EEEeecccCeEEEEc
Q 008467 289 LLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDW 366 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~ 366 (564)
+|++|+.||.|++|+.... .......+...+..+.+++++.+|++|+.|+.+++||+...... .....|...+..+.|
T Consensus 100 ~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~ 179 (340)
T 4aow_A 100 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRF 179 (340)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEE
T ss_pred EEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEE
Confidence 9999999999999997654 44556778889999999999999999999999999998765433 234456667777776
Q ss_pred CC---CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccccccc
Q 008467 367 RN---NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE 443 (564)
Q Consensus 367 ~~---~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~ 443 (564)
.. ...+++++.|+.|++|++...+++..+.+|.+.|++++|+|++++|++|+.||+|++||+++.+++..+..+ ..
T Consensus 180 ~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~ 258 (340)
T 4aow_A 180 SPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DI 258 (340)
T ss_dssp CSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SC
T ss_pred ccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ce
Confidence 43 346788999999999999999999999999999999999999999999999999999999999988877654 57
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe---------CCCCCEEEEEEcCCCCEEEEEeCCC
Q 008467 444 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN---------GHREPVYSLAFSPTGEYLASGSLDK 514 (564)
Q Consensus 444 i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---------~h~~~i~~~~~spdg~~lasgs~dg 514 (564)
+.++.|+|++. +++++.|+.|++||++.+..+..+. +|...|++++|+|||++||+|+.||
T Consensus 259 v~~~~~~~~~~----------~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg 328 (340)
T 4aow_A 259 INALCFSPNRY----------WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN 328 (340)
T ss_dssp EEEEEECSSSS----------EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTS
T ss_pred EEeeecCCCCc----------eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 99999998763 5667789999999999888776653 5788999999999999999999999
Q ss_pred cEEEEeCCCCe
Q 008467 515 SMHIWSLKEGK 525 (564)
Q Consensus 515 ~i~iw~~~~~~ 525 (564)
.|+||++++|+
T Consensus 329 ~v~iW~~~tGt 339 (340)
T 4aow_A 329 LVRVWQVTIGT 339 (340)
T ss_dssp CEEEEEEEC--
T ss_pred EEEEEeCCCcC
Confidence 99999999875
No 24
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.5e-42 Score=348.75 Aligned_cols=282 Identities=20% Similarity=0.366 Sum_probs=249.5
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc--
Q 008467 273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-- 349 (564)
Q Consensus 273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-- 349 (564)
+|...|++++|+|++++|++|+.||.|+||+.. +.....+..|...|.+++|+|+|++|++|+.|+++++||+.+..
T Consensus 64 gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~ 143 (380)
T 3iz6_a 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADR 143 (380)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSC
T ss_pred ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccc
Confidence 356789999999999999999999999999975 55667889999999999999999999999999999999986532
Q ss_pred -----eeEEEeecccCeEEEEcCC--CceEEEEeCCCeEEEEEcCCCceeeEe-----cCCCcceEEEEECC-CCCEEEE
Q 008467 350 -----WKQQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTF-----AGHQGEVNCVKWDP-TGSLLAS 416 (564)
Q Consensus 350 -----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~-----~~h~~~i~~v~~~~-~~~~las 416 (564)
....+..|.+.+..+.|.+ ...+++++.|+.|++|++.++..+..+ .+|...|.+++|++ ++.+|++
T Consensus 144 ~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 223 (380)
T 3iz6_a 144 DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFIS 223 (380)
T ss_dssp CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEE
T ss_pred cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEE
Confidence 3345667788888888765 456999999999999999999888777 68999999999987 8899999
Q ss_pred EeCCCcEEEEeCC-CCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC---
Q 008467 417 CSDDVTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR--- 492 (564)
Q Consensus 417 ~s~dg~i~iwd~~-~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~--- 492 (564)
|+.|++|++||++ ....+..+.+|...|.+++|+|++. +|++|+.||+|++||+++++.+..+..+.
T Consensus 224 gs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~---------~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 294 (380)
T 3iz6_a 224 GSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ---------RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN 294 (380)
T ss_dssp EETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS---------EEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred EECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC---------eEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence 9999999999998 4567788899999999999999875 79999999999999999999988876543
Q ss_pred ----CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe-----cCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 493 ----EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT-----GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 493 ----~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~-----~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
..|++++|+|+|++|++|+.||.|++||+.+++.+..+. +.+.|.+++|+|+|++||+|+.|+.|+||++.
T Consensus 295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 248999999999999999999999999999998887762 24569999999999999999999999999975
No 25
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.8e-40 Score=342.64 Aligned_cols=317 Identities=25% Similarity=0.456 Sum_probs=281.3
Q ss_pred eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
...+.+|...|.. ++++++++|++|+.||+|++||+.++.. .... ..|...|++++|+ +.
T Consensus 111 ~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~-------------~~~~----~~h~~~v~~~~~~--~~ 170 (445)
T 2ovr_B 111 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKC-------------LRTL----VGHTGGVWSSQMR--DN 170 (445)
T ss_dssp CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCE-------------EEEC----CCCSSCEEEEEEE--TT
T ss_pred eEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcE-------------EEEE----cCCCCCEEEEEec--CC
Confidence 4578899988644 3666799999999999999999976542 1111 2456789999997 67
Q ss_pred EEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467 289 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 367 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (564)
++++|+.||.|++|+.. +.....+.+|..+|.++.|+ ++.+++|+.|++|++||+.+++....+..|..++.++.|
T Consensus 171 ~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~- 247 (445)
T 2ovr_B 171 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY- 247 (445)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-
T ss_pred EEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE-
Confidence 99999999999999975 56677889999999999996 578999999999999999999999999999999999999
Q ss_pred CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEE
Q 008467 368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 447 (564)
Q Consensus 368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i 447 (564)
+...+++++.|+.|++|++....++..+.+|...|.+++| ++.++++|+.|+.|++||+.+++.+..+..|...+.++
T Consensus 248 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~ 325 (445)
T 2ovr_B 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM 325 (445)
T ss_dssp CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEE
T ss_pred CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEE
Confidence 6677899999999999999999999999999999999999 78999999999999999999999999999999999998
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 008467 448 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG---HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 524 (564)
Q Consensus 448 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~ 524 (564)
.+.+. +|++|+.||.|++||+++++.+..+.+ |..+|++++|+ +++|++|+.||.|++||+.++
T Consensus 326 ~~~~~-----------~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~ 392 (445)
T 2ovr_B 326 ELKDN-----------ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG 392 (445)
T ss_dssp EEETT-----------EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred EEeCC-----------EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCC
Confidence 88542 689999999999999999999999886 88899999996 679999999999999999999
Q ss_pred eEEEEEe------cCCCEEEEEEccCCCEEEEEEcCCc----EEEEEee
Q 008467 525 KIVKTYT------GNGGIFEVCWNKEGDKIAACFANHT----VCVLDFR 563 (564)
Q Consensus 525 ~~~~~~~------~~~~i~~~~w~~~g~~la~~~~~~~----v~v~~~~ 563 (564)
+.+..+. ..+.|.+++|+|+|..||+|+.||+ +.||||+
T Consensus 393 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 393 EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred ceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence 9988882 3456999999999999999999998 9999986
No 26
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5e-40 Score=353.16 Aligned_cols=328 Identities=18% Similarity=0.299 Sum_probs=274.0
Q ss_pred ceeEccCCccceEEEEECCCCC-EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCC---CeEEEEE
Q 008467 208 DVTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSK---DVTTLDW 283 (564)
Q Consensus 208 ~~~~l~~h~~~V~~~~~sp~~~-~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~V~~l~~ 283 (564)
....+.+|...|.+++|+|+++ +|++|+.|+.+++||+.++.. ..... .+.. .|++++|
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~-------------~~~~~----~~~~~~~~v~~~~~ 214 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF-------------SASDR----THHKQGSFVRDVEF 214 (615)
T ss_dssp EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE-------------EEEEC----SSSCTTCCEEEEEE
T ss_pred cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce-------------eeeec----ccCCCCceEEEEEE
Confidence 4567789999999999999997 899999999999999865421 11121 2344 7999999
Q ss_pred CCC-CCEEEEEeCCCeEEEEECC-CceeEee-c---CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeec
Q 008467 284 NGE-GTLLATGSYDGQARIWSTN-GDLKCTL-S---KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 357 (564)
Q Consensus 284 s~~-g~~l~sg~~dg~i~vw~~~-~~~~~~~-~---~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 357 (564)
+|+ +++|++++.||.|++|+.. +.....+ . .|..+|.+++|+ ++.+|++++.|++|++||+++++....+..+
T Consensus 215 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 215 SPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp CSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 999 9999999999999999965 5566666 5 899999999999 9999999999999999999999988888776
Q ss_pred ----ccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC-----------------------
Q 008467 358 ----SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT----------------------- 410 (564)
Q Consensus 358 ----~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~----------------------- 410 (564)
...+..+.|.+...+++++.++.|++|++....++..+.+|.+.|.+++| |+
T Consensus 294 ~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~ 372 (615)
T 1pgu_A 294 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHS 372 (615)
T ss_dssp TTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCC
T ss_pred CCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCccc
Confidence 35667777777788999999999999999887777777776665555554 32
Q ss_pred --------------------------------------------------------------------------------
Q 008467 411 -------------------------------------------------------------------------------- 410 (564)
Q Consensus 411 -------------------------------------------------------------------------------- 410 (564)
T Consensus 373 ~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (615)
T 1pgu_A 373 NLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV 452 (615)
T ss_dssp SCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred CceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEE
Confidence
Q ss_pred ---CCEEEEEeC-CCcEEEEeCCCCeee-eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE
Q 008467 411 ---GSLLASCSD-DVTAKIWNMKQDKYV-HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL 485 (564)
Q Consensus 411 ---~~~las~s~-dg~i~iwd~~~~~~~-~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 485 (564)
+++|++++. |+.|++||+.++... ..+..|...|.+++|+|++. +|++++.||.|++||+.+++.+
T Consensus 453 ~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---------~l~~~~~dg~i~iw~~~~~~~~ 523 (615)
T 1pgu_A 453 SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET---------YIAAGDVMGKILLYDLQSREVK 523 (615)
T ss_dssp EECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTTEEE
T ss_pred EEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCC---------EEEEcCCCCeEEEeeCCCCcce
Confidence 334444555 555666665554443 55677889999999999875 7999999999999999999999
Q ss_pred EEEeC-CCCCEEEEEEcC----------CCCEEEEEeCCCcEEEEeCCCC-eEEEEEecC-CCEEEEEEccCCCEEEEEE
Q 008467 486 YSLNG-HREPVYSLAFSP----------TGEYLASGSLDKSMHIWSLKEG-KIVKTYTGN-GGIFEVCWNKEGDKIAACF 552 (564)
Q Consensus 486 ~~~~~-h~~~i~~~~~sp----------dg~~lasgs~dg~i~iw~~~~~-~~~~~~~~~-~~i~~~~w~~~g~~la~~~ 552 (564)
..+.+ |..+|++++|+| ++++||+|+.||.|++|++.++ +++..+.++ ..|.+++|+|+|+ |++++
T Consensus 524 ~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~ 602 (615)
T 1pgu_A 524 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSG 602 (615)
T ss_dssp ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEE
T ss_pred eEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEec
Confidence 99888 999999999999 9999999999999999999998 777777654 5799999999999 99999
Q ss_pred cCCcEEEEEeeC
Q 008467 553 ANHTVCVLDFRM 564 (564)
Q Consensus 553 ~~~~v~v~~~~~ 564 (564)
.|+.|.|||+..
T Consensus 603 ~d~~v~iw~~~~ 614 (615)
T 1pgu_A 603 ADACIKRWNVVL 614 (615)
T ss_dssp TTSCEEEEEEC-
T ss_pred CCceEEEEeeec
Confidence 999999999863
No 27
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.4e-40 Score=362.71 Aligned_cols=293 Identities=25% Similarity=0.433 Sum_probs=247.0
Q ss_pred eEccCCccceEEEEECCCC-CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 210 TILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~~-~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
..+++|.+.|++++|+|++ .+|+|||.|++|+||++.+..... . ..... ...|...|++++|+|+|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~-------~-~~~~~----~~~h~~~v~~v~~s~~g~ 443 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY-------G-VAQRR----LTGHSHFVEDVVLSSDGQ 443 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS-------C-EEEEE----EECCSSCEEEEEECTTSS
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc-------c-cccce----ecCCCCcEEEEEECCCCC
Confidence 4688999999999999975 799999999999999987543110 0 11111 234567899999999999
Q ss_pred EEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467 289 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 367 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (564)
+|++|+.||.|+|||.. +.....+.+|..+|.+++|+|++++|++|+.|++|++||+....... +
T Consensus 444 ~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~-~------------- 509 (694)
T 3dm0_A 444 FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYT-I------------- 509 (694)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE-E-------------
T ss_pred EEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCccee-e-------------
Confidence 99999999999999976 45667889999999999999999999999999999999975432110 0
Q ss_pred CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCC--CEEEEEeCCCcEEEEeCCCCeeeeecccccccEE
Q 008467 368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG--SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 445 (564)
Q Consensus 368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~--~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~ 445 (564)
.....+|...|.+++|+|++ ..|++|+.|++|++||+++.++...+.+|...|+
T Consensus 510 ------------------------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~ 565 (694)
T 3dm0_A 510 ------------------------SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVS 565 (694)
T ss_dssp ------------------------CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred ------------------------ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEE
Confidence 01124688899999999987 6899999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467 446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 525 (564)
Q Consensus 446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~ 525 (564)
+++|+|++. +|++|+.||+|++||+++++++..+.. ...|.+++|+|++.+|++++. +.|+|||+++++
T Consensus 566 ~v~~spdg~---------~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~~ 634 (694)
T 3dm0_A 566 TVAVSPDGS---------LCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAATE-HGIKIWDLESKS 634 (694)
T ss_dssp EEEECTTSS---------EEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEET-TEEEEEETTTTE
T ss_pred EEEEeCCCC---------EEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEcC-CCEEEEECCCCC
Confidence 999999875 799999999999999999999888764 467999999999999988765 559999999999
Q ss_pred EEEEEecC--------------------CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 526 IVKTYTGN--------------------GGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 526 ~~~~~~~~--------------------~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
++..+... ..+.+++|+|+|++|++|+.||.|+|||+.
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 635 IVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 88776421 126789999999999999999999999985
No 28
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-39 Score=326.29 Aligned_cols=297 Identities=19% Similarity=0.325 Sum_probs=256.5
Q ss_pred eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
...+.+|...|++++|+|++++|++|+.||.|++|++.++.. .... ..+...|++++|+|+++
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-------------~~~~----~~h~~~v~~~~~~~~~~ 87 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER-------------LGTL----DGHTGTIWSIDVDCFTK 87 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE-------------EEEE----CCCSSCEEEEEECTTSS
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh-------------hhhh----hhcCCcEEEEEEcCCCC
Confidence 356899999999999999999999999999999999876532 1111 23567899999999999
Q ss_pred EEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCC-----CcEEEEECCCcceeEEEeecccCeE
Q 008467 289 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-----KTAIVWDVKTEEWKQQFEFHSGPTL 362 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~ 362 (564)
+|++++.||.|++|+... .....+. |..+|.+++|+|++++|++++.+ +.|++||+........+..
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~------ 160 (369)
T 3zwl_B 88 YCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTK------ 160 (369)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEE------
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecc------
Confidence 999999999999999764 4455555 88999999999999999999999 9999999876543222111
Q ss_pred EEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCc--ceEEEEECCCCCEEEEEeCCCcEEEEeCCC-Ceeeeeccc
Q 008467 363 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQG--EVNCVKWDPTGSLLASCSDDVTAKIWNMKQ-DKYVHDLRE 439 (564)
Q Consensus 363 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~--~i~~v~~~~~~~~las~s~dg~i~iwd~~~-~~~~~~~~~ 439 (564)
....++..+.+|.+ .+.+++|+|++++|++++.||.|++||+.+ ...+..+..
T Consensus 161 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 216 (369)
T 3zwl_B 161 ------------------------VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL 216 (369)
T ss_dssp ------------------------ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC
T ss_pred ------------------------cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec
Confidence 11234455666776 899999999999999999999999999998 788888999
Q ss_pred ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCC-----
Q 008467 440 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK----- 514 (564)
Q Consensus 440 ~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg----- 514 (564)
|...|.+++|+|++. +|++++.||.|++||+++++.+..+. +..++.+++|+|+++++++++.++
T Consensus 217 ~~~~v~~~~~~~~~~---------~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (369)
T 3zwl_B 217 HEKSISDMQFSPDLT---------YFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVT 286 (369)
T ss_dssp CSSCEEEEEECTTSS---------EEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-----
T ss_pred CCCceeEEEECCCCC---------EEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEE
Confidence 999999999999875 78999999999999999999988887 778899999999999999999988
Q ss_pred ---------cEEEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 515 ---------SMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 515 ---------~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
.|++|+..+++.+..+.++ ..|.+++|+|+|++|++|+.||.|.||+++
T Consensus 287 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 287 TTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp --------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred EEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence 8999999999999888764 579999999999999999999999999985
No 29
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.5e-39 Score=323.74 Aligned_cols=280 Identities=21% Similarity=0.353 Sum_probs=237.4
Q ss_pred ccCCCCeEEEEE-----CC-CCCEEEEEeCCCeEEEEECCC--------ceeEeecCCCCCEEEEEeCCCCCEEEEeeCC
Q 008467 272 NEKSKDVTTLDW-----NG-EGTLLATGSYDGQARIWSTNG--------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD 337 (564)
Q Consensus 272 ~~~~~~V~~l~~-----s~-~g~~l~sg~~dg~i~vw~~~~--------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D 337 (564)
.+|...|++++| ++ ++.+|++|+.||.|++|+... .....+.+|..+|.+++|+|++.++++|+.|
T Consensus 18 ~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D 97 (343)
T 2xzm_R 18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97 (343)
T ss_dssp ECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETT
T ss_pred ccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCC
Confidence 356788999999 77 999999999999999999752 2445788999999999999999999999999
Q ss_pred CcEEEEECCCcceeEEEeecccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeE--ecCCCcceEEEEECCCC---
Q 008467 338 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKT--FAGHQGEVNCVKWDPTG--- 411 (564)
Q Consensus 338 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~--~~~h~~~i~~v~~~~~~--- 411 (564)
++|++||+++++....+..|...+.++.|.++ ..+++++.|+.|++|++........ ..+|...|.+++|+|++
T Consensus 98 ~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 177 (343)
T 2xzm_R 98 KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSA 177 (343)
T ss_dssp SEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSC
T ss_pred CcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccc
Confidence 99999999999999999999999999999754 5788999999999999974432221 23788999999999987
Q ss_pred -------CEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-Ce
Q 008467 412 -------SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GK 483 (564)
Q Consensus 412 -------~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~ 483 (564)
.+|++++.|++|++||. .......+..|...|.+++|+|++. +|++|+.||+|++||+.. ..
T Consensus 178 ~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~---------~l~sgs~dg~v~iwd~~~~~~ 247 (343)
T 2xzm_R 178 NKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGK---------YIATGGKDKKLLIWDILNLTY 247 (343)
T ss_dssp SCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSS---------EEEEEETTCEEEEEESSCCSS
T ss_pred cccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCC---------EEEEEcCCCeEEEEECCCCcc
Confidence 78999999999999994 5566778889999999999999885 799999999999999953 33
Q ss_pred EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE--EEe------------cCCCEEEEEEccCCCEEE
Q 008467 484 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK--TYT------------GNGGIFEVCWNKEGDKIA 549 (564)
Q Consensus 484 ~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~--~~~------------~~~~i~~~~w~~~g~~la 549 (564)
....+. +...|.+++|+|++++|++| .|+.|++|++.+++... .+. ....+.+++|+|+|++||
T Consensus 248 ~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 325 (343)
T 2xzm_R 248 PQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLF 325 (343)
T ss_dssp CSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEE
T ss_pred cceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEE
Confidence 334443 45679999999999988765 47779999998876543 332 124589999999999999
Q ss_pred EEEcCCcEEEEEee
Q 008467 550 ACFANHTVCVLDFR 563 (564)
Q Consensus 550 ~~~~~~~v~v~~~~ 563 (564)
+|+.||.|+||+++
T Consensus 326 sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 326 AGFTDGVIRTFSFE 339 (343)
T ss_dssp EEETTSEEEEEEEE
T ss_pred EecCCceEEEEEEE
Confidence 99999999999985
No 30
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.1e-40 Score=322.59 Aligned_cols=246 Identities=26% Similarity=0.461 Sum_probs=221.2
Q ss_pred eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467 210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 289 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 289 (564)
..+.+|...|.+++|+|++.++++|+.|++|++||+.++... ... ..+...+.+++|+|++++
T Consensus 74 ~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~-------------~~~----~~~~~~~~~~~~spdg~~ 136 (321)
T 3ow8_A 74 WSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQI-------------KSI----DAGPVDAWTLAFSPDSQY 136 (321)
T ss_dssp EEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE-------------EEE----ECCTTCCCCEEECTTSSE
T ss_pred eeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEE-------------EEE----eCCCccEEEEEECCCCCE
Confidence 357899999999999999999999999999999999765321 111 123456889999999999
Q ss_pred EEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC
Q 008467 290 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 368 (564)
Q Consensus 290 l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 368 (564)
|++|+.||.|++|+.. +.....+..|...|.+++|+|++++|++|+.|++|++||+++++.
T Consensus 137 l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~------------------ 198 (321)
T 3ow8_A 137 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL------------------ 198 (321)
T ss_dssp EEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE------------------
T ss_pred EEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE------------------
Confidence 9999999999999976 455667888999999999999999999999999999999987543
Q ss_pred CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEE
Q 008467 369 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 448 (564)
Q Consensus 369 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~ 448 (564)
+..+.+|...|.+++|+|++++|++|+.|++|++||+++...+..+.+|...|.+++
T Consensus 199 -----------------------~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 255 (321)
T 3ow8_A 199 -----------------------LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA 255 (321)
T ss_dssp -----------------------EEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred -----------------------EEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEE
Confidence 345667889999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 008467 449 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 522 (564)
Q Consensus 449 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~ 522 (564)
|+|++. +|++|+.|++|++||+.+++++.++.+|..+|++++|+|+|++|++++.||.|+|||..
T Consensus 256 ~sp~~~---------~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 256 FCPDDT---------HFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ECTTSS---------EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred ECCCCC---------EEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999875 79999999999999999999999999999999999999999999999999999999964
No 31
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-40 Score=368.88 Aligned_cols=332 Identities=14% Similarity=0.194 Sum_probs=260.9
Q ss_pred EccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEE
Q 008467 211 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 290 (564)
Q Consensus 211 ~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 290 (564)
...||...|++++|+|++++||+|+.||+|+||+..+... ... ..+...|++++|+| |++|
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~-------------~~~-----~~~~~~V~~l~fsp-g~~L 72 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV-------------VIK-----LEDRSAIKEMRFVK-GIYL 72 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE-------------EEE-----CSSCCCEEEEEEET-TTEE
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE-------------EEE-----cCCCCCEEEEEEcC-CCEE
Confidence 4468999999999999999999999999999999754321 111 12356899999999 8899
Q ss_pred EEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeE-----------EEeecc
Q 008467 291 ATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ-----------QFEFHS 358 (564)
Q Consensus 291 ~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~-----------~~~~~~ 358 (564)
++++.|+.|++||.. +.....+. |.+.|++++|+|++++|++|+.||+|++||+.++.... .+..|.
T Consensus 73 ~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~ 151 (902)
T 2oaj_A 73 VVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL 151 (902)
T ss_dssp EEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC
T ss_pred EEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCC
Confidence 999999999999986 45555564 77899999999999999999999999999999877531 223467
Q ss_pred cCeEEEEcCCC--ceEEEEeCCCeEEEEEcCCCceeeEecCC------------------CcceEEEEECCCCCEEEEEe
Q 008467 359 GPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGH------------------QGEVNCVKWDPTGSLLASCS 418 (564)
Q Consensus 359 ~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h------------------~~~i~~v~~~~~~~~las~s 418 (564)
+++.++.|.++ ..+++++.|+.| +|++...+++..+.+| ...|++++|+|+|++||+|+
T Consensus 152 ~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs 230 (902)
T 2oaj_A 152 SPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIH 230 (902)
T ss_dssp CCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEE
T ss_pred CCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEE
Confidence 78999999875 578899999999 9999999988888766 56799999999999999999
Q ss_pred CCCcEEEEeCCCCeeeee--cc---c-------------ccccEEEEEEccCCC---------C-CC-------------
Q 008467 419 DDVTAKIWNMKQDKYVHD--LR---E-------------HSKEIYTIRWSPTGS---------G-TN------------- 457 (564)
Q Consensus 419 ~dg~i~iwd~~~~~~~~~--~~---~-------------~~~~i~~i~~~p~~~---------~-~~------------- 457 (564)
.||+|++||+++++++.. +. . |...|++++|+|... + ..
T Consensus 231 ~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 231 EDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp TTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 999999999998887643 21 1 345799999954210 0 00
Q ss_pred --------------------------------------------CC-----CCcEEEEEEeCCCeEEEEeCCCCeEEEE-
Q 008467 458 --------------------------------------------NP-----NQQLILASASFDSTVKLWDVELGKLLYS- 487 (564)
Q Consensus 458 --------------------------------------------~~-----~~~~~l~s~s~dg~i~iwd~~~~~~~~~- 487 (564)
.| .+...+++++.||+|++||+.++.....
T Consensus 311 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~ 390 (902)
T 2oaj_A 311 GYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKA 390 (902)
T ss_dssp EECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCG
T ss_pred CCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccccc
Confidence 00 0111456777889999999877643321
Q ss_pred ----------------------------------------EeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 008467 488 ----------------------------------------LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV 527 (564)
Q Consensus 488 ----------------------------------------~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~ 527 (564)
+.+|...+.+++|+|||++||+|+.|++|++||+.++.+.
T Consensus 391 ~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~ 470 (902)
T 2oaj_A 391 SLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQ 470 (902)
T ss_dssp GGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTT
T ss_pred ccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCcccc
Confidence 2334444555667899999999999999999999887531
Q ss_pred --EEE----------ecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 528 --KTY----------TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 528 --~~~----------~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
..+ .....|.+++|+|||++||+|+.|++|+|||+.
T Consensus 471 ~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~ 518 (902)
T 2oaj_A 471 DNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYE 518 (902)
T ss_dssp TTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred CCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEec
Confidence 111 123579999999999999999999999999985
No 32
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.8e-40 Score=333.12 Aligned_cols=285 Identities=15% Similarity=0.249 Sum_probs=238.5
Q ss_pred eeEccCCccceEEEEECCCC-CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-C
Q 008467 209 VTILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-E 286 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~-~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~ 286 (564)
...+.+|...|++++|+|++ ++||+|+.|+.|+||++.++... ..+ ....+...|++++|+| +
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----------~~~-----~~~~h~~~v~~~~~~~~~ 130 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT----------SFI-----QGMGPGDAITGMKFNQFN 130 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE----------EEE-----CCCSTTCBEEEEEEETTE
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc----------eee-----ecCCcCCceeEEEeCCCC
Confidence 34678999999999999998 99999999999999999765321 000 1123567899999999 7
Q ss_pred CCEEEEEeCCCeEEEEECCCceeEeecCC---CCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEE
Q 008467 287 GTLLATGSYDGQARIWSTNGDLKCTLSKH---KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 363 (564)
Q Consensus 287 g~~l~sg~~dg~i~vw~~~~~~~~~~~~h---~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 363 (564)
+.+|++++.||.|++|+..+.....+..| ...|.+++|+|++++|++|+.|+.|++||++ +.
T Consensus 131 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~-------------- 195 (383)
T 3ei3_B 131 TNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH-------------- 195 (383)
T ss_dssp EEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC--------------
T ss_pred CCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC--------------
Confidence 89999999999999999988766666544 4889999999999999999999999999984 22
Q ss_pred EEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC-EEEEEeCCCcEEEEeCCC----Ceeeeecc
Q 008467 364 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQ----DKYVHDLR 438 (564)
Q Consensus 364 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~las~s~dg~i~iwd~~~----~~~~~~~~ 438 (564)
++..+.+|.+.|.+++|+|+++ +|++|+.|++|++||+++ ..++..+
T Consensus 196 ---------------------------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~- 247 (383)
T 3ei3_B 196 ---------------------------EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM- 247 (383)
T ss_dssp ---------------------------EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-
T ss_pred ---------------------------EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-
Confidence 2345667999999999999999 999999999999999987 5566555
Q ss_pred cccccEEEEEEcc-CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC-----------------CCEEEEEE
Q 008467 439 EHSKEIYTIRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-----------------EPVYSLAF 500 (564)
Q Consensus 439 ~~~~~i~~i~~~p-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-----------------~~i~~~~~ 500 (564)
.|...|.+++|+| ++. +|++++.|+.|++||+++++.+..+.+|. ..+..++|
T Consensus 248 ~~~~~v~~~~~s~~~~~---------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 318 (383)
T 3ei3_B 248 PHEKPVNAAYFNPTDST---------KLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGR 318 (383)
T ss_dssp ECSSCEEEEEECTTTSC---------EEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEEC
T ss_pred cCCCceEEEEEcCCCCC---------EEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEe
Confidence 6999999999999 775 78999999999999999887666665442 34555777
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC---CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 501 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN---GGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 501 spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~---~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
+|+|++ +|+.||.|+|||+.+++++..+.+. +.+..++|+|+|++||+|+ |+.|.|||++
T Consensus 319 s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 319 YPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp BCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred cCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence 777777 7889999999999999999998752 3456679999999999996 8999999985
No 33
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2e-40 Score=339.29 Aligned_cols=319 Identities=13% Similarity=0.184 Sum_probs=262.7
Q ss_pred ceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCC
Q 008467 218 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 297 (564)
Q Consensus 218 ~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg 297 (564)
.+++++|+|++++|++|+.|+.+++|++.++...... .....+....|++++++|++|+.||
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~l~~~~~dg 119 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKML------------------KRADYTAVDTAKLQMRRFILGTTEG 119 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTS------------------CSCCEEEEEEECSSSCEEEEEETTS
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEE------------------ecCCceEEEEEecCCCEEEEEECCC
Confidence 3557899999999999999999999998764322110 0113345557899999999999999
Q ss_pred eEEEEECCCc-eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCC-ceEEEE
Q 008467 298 QARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATS 375 (564)
Q Consensus 298 ~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 375 (564)
.|++|+.... ....+.+|.++|.+++|+|++++|++|+.|++|++||+.+++....+..|...+.++.|.++ ..++++
T Consensus 120 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 199 (420)
T 3vl1_A 120 DIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSA 199 (420)
T ss_dssp CEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEE
T ss_pred CEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEE
Confidence 9999998654 44556799999999999999999999999999999999999999999999999999999754 578899
Q ss_pred eCCCeEEEEEcCCCceeeEecCC---Ccce---------------------EEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008467 376 STDNMIYVCKIGENRPIKTFAGH---QGEV---------------------NCVKWDPTGSLLASCSDDVTAKIWNMKQD 431 (564)
Q Consensus 376 ~~d~~i~~~~~~~~~~~~~~~~h---~~~i---------------------~~v~~~~~~~~las~s~dg~i~iwd~~~~ 431 (564)
+.|+.|++|++..++++..+..| ...| .+++|+|++++|++|+.||.|++||++++
T Consensus 200 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 279 (420)
T 3vl1_A 200 SLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK 279 (420)
T ss_dssp ETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC
T ss_pred cCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999999999988888753 3334 44556899999999999999999999998
Q ss_pred eeeeecc-cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEEeC-CCCCEEEEEEcCCCCEEE
Q 008467 432 KYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNG-HREPVYSLAFSPTGEYLA 508 (564)
Q Consensus 432 ~~~~~~~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~-h~~~i~~~~~spdg~~la 508 (564)
+.+..+. .|...|.+++|+|++. .+|++|+.||.|++||+++++. +..+.+ |..+|.++.| |++++|+
T Consensus 280 ~~~~~~~~~~~~~v~~~~~~~~~~--------~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~ 350 (420)
T 3vl1_A 280 EQTIQLPSKFTCSCNSLTVDGNNA--------NYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFV 350 (420)
T ss_dssp CEEEEECCTTSSCEEEEEECSSCT--------TEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEE
T ss_pred ceeEEcccccCCCceeEEEeCCCC--------CEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEE
Confidence 8776664 5788999999999874 2789999999999999998754 666665 6778888855 5789999
Q ss_pred EEeCCCcEEEEeCCCCe----------EEEEEecCCCEEEEEEccCCC---EEEEEEcCCcEEEEEee
Q 008467 509 SGSLDKSMHIWSLKEGK----------IVKTYTGNGGIFEVCWNKEGD---KIAACFANHTVCVLDFR 563 (564)
Q Consensus 509 sgs~dg~i~iw~~~~~~----------~~~~~~~~~~i~~~~w~~~g~---~la~~~~~~~v~v~~~~ 563 (564)
+|+.||.|++|++.+.. ........+.+.+++|+|+|+ .|++++.+|.+.+|++.
T Consensus 351 s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 351 SSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp EETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred EecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 99999999999987632 112222345789999999999 67777788999999874
No 34
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.5e-39 Score=346.55 Aligned_cols=345 Identities=17% Similarity=0.261 Sum_probs=280.9
Q ss_pred CceeEccCCccc-eEEEEECC--CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEE
Q 008467 207 SDVTILEGHTSE-VCACAWSP--AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 283 (564)
Q Consensus 207 ~~~~~l~~h~~~-V~~~~~sp--~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~ 283 (564)
.....+.+|... |++++|+| ++++||+|+.||.|+||++.++.... ......... ...+...|.+++|
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~-----~~~~~~~~~----~~~~~~~v~~~~~ 124 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN-----SVEVNVKSE----FQVLAGPISDISW 124 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT-----EEEEEEEEE----EECCSSCEEEEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccc-----cccccccch----hhcccccEEEEEE
Confidence 356778999999 99999999 99999999999999999986431000 000111111 1234678999999
Q ss_pred CCCCCEEEEEeCC----CeEEEEECCCceeEeecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCcceeEEEeecc
Q 008467 284 NGEGTLLATGSYD----GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHS 358 (564)
Q Consensus 284 s~~g~~l~sg~~d----g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 358 (564)
+|++++|++++.+ +.|++|+ .+.....+.+|...|.+++|+|++. .|++++.|+.|++||+.+++....+..|.
T Consensus 125 s~~~~~l~~~~~~~~~~~~v~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~ 203 (615)
T 1pgu_A 125 DFEGRRLCVVGEGRDNFGVFISWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH 203 (615)
T ss_dssp CTTSSEEEEEECCSSCSEEEEETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSS
T ss_pred eCCCCEEEEeccCCCCccEEEEEE-CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccC
Confidence 9999999999988 7999999 5567778899999999999999998 79999999999999999999999998888
Q ss_pred c---CeEEEEcCCC--ceEEEEeCCCeEEEEEcCCCceeeEe-c---CCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008467 359 G---PTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTF-A---GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 429 (564)
Q Consensus 359 ~---~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~-~---~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~ 429 (564)
. .+.++.|.++ ..+++++.|+.|++|++..++++..+ . +|...|.+++|+ ++++|++++.|+.|++||+.
T Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~ 282 (615)
T 1pgu_A 204 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT 282 (615)
T ss_dssp CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT
T ss_pred CCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECC
Confidence 8 8999999765 56888999999999999999999888 6 899999999999 99999999999999999998
Q ss_pred CCeeeeecc---------------------------------------------cccccEEEEEEccC------------
Q 008467 430 QDKYVHDLR---------------------------------------------EHSKEIYTIRWSPT------------ 452 (564)
Q Consensus 430 ~~~~~~~~~---------------------------------------------~~~~~i~~i~~~p~------------ 452 (564)
+++.+..+. .|...|.+++| |+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~ 361 (615)
T 1pgu_A 283 TSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIME 361 (615)
T ss_dssp TTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEE
T ss_pred CCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEE
Confidence 765544332 33334444443 22
Q ss_pred ---------------------CCCC-----------CC----------------CC-------------------C----
Q 008467 453 ---------------------GSGT-----------NN----------------PN-------------------Q---- 461 (564)
Q Consensus 453 ---------------------~~~~-----------~~----------------~~-------------------~---- 461 (564)
+... .+ |+ .
T Consensus 362 w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (615)
T 1pgu_A 362 WSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 441 (615)
T ss_dssp TTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceee
Confidence 1100 00 00 0
Q ss_pred --------------cEEEEEEeC-CCeEEEEeCCCCeEE-EEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467 462 --------------QLILASASF-DSTVKLWDVELGKLL-YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 525 (564)
Q Consensus 462 --------------~~~l~s~s~-dg~i~iwd~~~~~~~-~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~ 525 (564)
..+|++++. |+.|++||+..++.. ..+.+|..+|++++|+|+|++|++|+.||.|++|++.+++
T Consensus 442 ~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 521 (615)
T 1pgu_A 442 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE 521 (615)
T ss_dssp EEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred ecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCc
Confidence 125677777 888888888876655 5667899999999999999999999999999999999999
Q ss_pred EEEEEe--cCCCEEEEEEcc----------CCCEEEEEEcCCcEEEEEee
Q 008467 526 IVKTYT--GNGGIFEVCWNK----------EGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 526 ~~~~~~--~~~~i~~~~w~~----------~g~~la~~~~~~~v~v~~~~ 563 (564)
.+..+. ....|.+++|+| +|++||+|+.|+.|+|||++
T Consensus 522 ~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 571 (615)
T 1pgu_A 522 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 571 (615)
T ss_dssp EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred ceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECC
Confidence 988876 456799999999 99999999999999999975
No 35
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=5.3e-39 Score=333.40 Aligned_cols=317 Identities=23% Similarity=0.363 Sum_probs=264.8
Q ss_pred eeEccCCccce-EEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467 209 VTILEGHTSEV-CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 287 (564)
Q Consensus 209 ~~~l~~h~~~V-~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 287 (564)
...+.+|...| .++.| ++++|++|+.||+|++||+.++.. +... ..|...|++++|++++
T Consensus 114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~-------------~~~~----~~h~~~V~~l~~~~~~ 174 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKF-------------LLQL----SGHDGGVWALKYAHGG 174 (464)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEE-------------EEEE----CCCSSCEEEEEECSTT
T ss_pred eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcE-------------EEEE----eCCCcCEEEEEEcCCC
Confidence 35788999886 55555 678999999999999999876531 1112 2456889999999988
Q ss_pred CEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeC--CCCCEEEEeeCCCcEEEEECCCcce--------------
Q 008467 288 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWN--KKGDYLLTGSCDKTAIVWDVKTEEW-------------- 350 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~--~~~~~l~s~s~D~~v~iwd~~~~~~-------------- 350 (564)
+|++|+.||.|++|+.. +.....+.+|.++|.+++|+ +++.+|++|+.|++|++||+.++..
T Consensus 175 -~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 253 (464)
T 3v7d_B 175 -ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF 253 (464)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEE
T ss_pred -EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEe
Confidence 99999999999999976 55677888999999999998 5778999999999999999987653
Q ss_pred ---------eEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCC
Q 008467 351 ---------KQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV 421 (564)
Q Consensus 351 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg 421 (564)
...+..|...+..+.. +...+++++.|+.|++|++.+.+++..+.+|...|.+++|+|++++|++|+.||
T Consensus 254 ~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg 332 (464)
T 3v7d_B 254 HTPEENPYFVGVLRGHMASVRTVSG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 332 (464)
T ss_dssp SCGGGCTTEEEEECCCSSCEEEEEE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred eccCCCeEEEEEccCccceEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 3344556666666643 345788999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEc
Q 008467 422 TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS 501 (564)
Q Consensus 422 ~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~s 501 (564)
+|++||+.+++++..+.+|...|.++.|++. +|++|+.||+|++||+.++....... |...+..++|+
T Consensus 333 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-----------~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~ 400 (464)
T 3v7d_B 333 TIRIWDLENGELMYTLQGHTALVGLLRLSDK-----------FLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFY 400 (464)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECSS-----------EEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEE
T ss_pred cEEEEECCCCcEEEEEeCCCCcEEEEEEcCC-----------EEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEE
Confidence 9999999999999999999999999999742 79999999999999999988776664 66678889999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEE--ecCCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467 502 PTGEYLASGSLDKSMHIWSLKEGKIVKTY--TGNGGIFEVCWNKEGDKIAACFANHTVCVL 560 (564)
Q Consensus 502 pdg~~lasgs~dg~i~iw~~~~~~~~~~~--~~~~~i~~~~w~~~g~~la~~~~~~~v~v~ 560 (564)
|++++|++|+ ||.|++||+++++++..+ .....|.+++|+ ....++++..++.+.++
T Consensus 401 ~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 401 VSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp ECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred eCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 9999999999 899999999999998763 334569999997 33344455566655443
No 36
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.7e-39 Score=359.41 Aligned_cols=327 Identities=22% Similarity=0.328 Sum_probs=281.4
Q ss_pred eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
...+.+|.+.|.+++|||++++||+|+.||.|+||++.++.. .... ..+...|++++|+|+++
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~-------------~~~~----~~~~~~v~~~~~s~~~~ 68 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE-------------VRSI----QVTETPVRAGKFIARKN 68 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-------------EEEE----ECCSSCEEEEEEEGGGT
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce-------------EEEE----ecCCCcEEEEEEeCCCC
Confidence 457889999999999999999999999999999999876531 1111 13467899999999999
Q ss_pred EEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc-ceeEEEeecccCeEEEEc
Q 008467 289 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDW 366 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~ 366 (564)
+|++|+.||.|++|+.. +.....+.+|.++|++++|+|++.+|++++.|++|++||+.++ .....+..|...+.++.|
T Consensus 69 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~ 148 (814)
T 3mkq_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148 (814)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEE
Confidence 99999999999999975 5667788999999999999999999999999999999999887 667778888999999999
Q ss_pred CC--CceEEEEeCCCeEEEEEcCCCceeeEecCCC-cceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCeeeeeccccc
Q 008467 367 RN--NVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHDLREHS 441 (564)
Q Consensus 367 ~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~i~~v~~~~--~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~ 441 (564)
.+ ...+++++.|+.|++|++....+...+..|. ..+.+++|+| ++.+|++|+.||.|++||+.++..+..+..|.
T Consensus 149 ~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 228 (814)
T 3mkq_A 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228 (814)
T ss_dssp ETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence 76 4578999999999999998888777777655 8899999999 99999999999999999999999999999999
Q ss_pred ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEE
Q 008467 442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE--YLASGSLDKSMHIW 519 (564)
Q Consensus 442 ~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~--~lasgs~dg~i~iw 519 (564)
..|.+++|+|++. +|++++.||.|++||+.+++.+..+..|..+|.+++|+|+|. ++++++ ++.+.+|
T Consensus 229 ~~v~~~~~~~~~~---------~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~ 298 (814)
T 3mkq_A 229 SNVSFAVFHPTLP---------IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVL 298 (814)
T ss_dssp SCEEEEEECSSSS---------EEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEE
T ss_pred CCEEEEEEcCCCC---------EEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEE
Confidence 9999999999875 799999999999999999999999999999999999999997 456555 5568888
Q ss_pred eCCCCeEEEEEe--------------------------------------------cCCCEEEEEEccCCCEEEEEEcCC
Q 008467 520 SLKEGKIVKTYT--------------------------------------------GNGGIFEVCWNKEGDKIAACFANH 555 (564)
Q Consensus 520 ~~~~~~~~~~~~--------------------------------------------~~~~i~~~~w~~~g~~la~~~~~~ 555 (564)
++..+.....+. ....+..++|+|+|++|++++ ++
T Consensus 299 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~ 377 (814)
T 3mkq_A 299 SLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DG 377 (814)
T ss_dssp ECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TT
T ss_pred EcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CC
Confidence 876532211111 011356899999999999997 88
Q ss_pred cEEEEEee
Q 008467 556 TVCVLDFR 563 (564)
Q Consensus 556 ~v~v~~~~ 563 (564)
.+.||+++
T Consensus 378 ~~~i~~~~ 385 (814)
T 3mkq_A 378 EYVIYTAL 385 (814)
T ss_dssp EEEEEETT
T ss_pred EEEEEECc
Confidence 99999853
No 37
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=323.42 Aligned_cols=253 Identities=19% Similarity=0.259 Sum_probs=207.8
Q ss_pred cCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEE
Q 008467 213 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT 292 (564)
Q Consensus 213 ~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~s 292 (564)
..|...|.+++|+|++ .|++|+.||+|+|||+.++.... . .. .....|...|++++|+|+|++|++
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~--------~--~~---~~~~~H~~~V~~v~~spdg~~l~s 144 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLI--------V--SK---FCKYEHDDIVSTVSVLSSGTQAVS 144 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCE--------E--EE---EEEECCSSCEEEEEECTTSSEEEE
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCcee--------E--ee---ccccCCCCCEEEEEECCCCCEEEE
Confidence 3466789999999985 67899999999999998764321 1 11 111245678999999999999999
Q ss_pred EeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCc
Q 008467 293 GSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 370 (564)
Q Consensus 293 g~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (564)
|+.||.|++||.. +.....+.+|.+.|.+++|+|++. .|++|+.|++|++||+++++....+.
T Consensus 145 gs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--------------- 209 (344)
T 4gqb_B 145 GSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG--------------- 209 (344)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC---------------
T ss_pred EeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeee---------------
Confidence 9999999999975 567778999999999999999985 78999999999999998876543321
Q ss_pred eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEE
Q 008467 371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 449 (564)
Q Consensus 371 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~ 449 (564)
...|...+.+++|+|+ +++|++|+.||+|+|||+++++++..+.+|...|++++|
T Consensus 210 ------------------------~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~f 265 (344)
T 4gqb_B 210 ------------------------CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVF 265 (344)
T ss_dssp ----------------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEE
T ss_pred ------------------------cceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 1234556889999985 578899999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEE
Q 008467 450 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSLKEGKIV 527 (564)
Q Consensus 450 ~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~-~lasgs~dg~i~iw~~~~~~~~ 527 (564)
+|++. .+|++|+.|++|+|||+.+++++ .+.+|...|++++|||+++ +|++||.||+|++|++.+..+.
T Consensus 266 sp~g~--------~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~ 335 (344)
T 4gqb_B 266 SPHSV--------PFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLP 335 (344)
T ss_dssp CSSSS--------CCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC----
T ss_pred ccCCC--------eEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCC
Confidence 99874 26899999999999999988754 6789999999999999986 5779999999999999876543
No 38
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.2e-39 Score=330.75 Aligned_cols=295 Identities=21% Similarity=0.323 Sum_probs=253.1
Q ss_pred eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC--
Q 008467 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-- 286 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-- 286 (564)
..++.+|...|++++|+| ++|++|+.||.|+||++.++..... ... .... ..+...|++++|+|+
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~-----~~~--~~~~----~~h~~~v~~~~~~~~~~ 75 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP-----KDK--SYSH----FVHKSGLHHVDVLQAIE 75 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG-----GGG--EEEE----ECCTTCEEEEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccC-----CCc--ceEE----ecCCCcEEEEEEecccc
Confidence 457889999999999999 8999999999999999976542110 000 0111 235678999999999
Q ss_pred --C---CEEEEEeCCCeEEEEECCCce------eEeecCC-----CCCEEEEEeC----CCCCE-EEEeeCCCcEEEEEC
Q 008467 287 --G---TLLATGSYDGQARIWSTNGDL------KCTLSKH-----KGPIFSLKWN----KKGDY-LLTGSCDKTAIVWDV 345 (564)
Q Consensus 287 --g---~~l~sg~~dg~i~vw~~~~~~------~~~~~~h-----~~~V~~l~~~----~~~~~-l~s~s~D~~v~iwd~ 345 (564)
| .+|++++.||.|++|+..... ...+..| ..+|.+++|+ |++++ |++++.|+.|++||+
T Consensus 76 ~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 155 (397)
T 1sq9_A 76 RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 155 (397)
T ss_dssp TTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred cCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC
Confidence 9 999999999999999975433 6678888 5999999999 99999 999999999999999
Q ss_pred CC------cceeE-----EEe-------ecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecC---C---Ccc
Q 008467 346 KT------EEWKQ-----QFE-------FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG---H---QGE 401 (564)
Q Consensus 346 ~~------~~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~---h---~~~ 401 (564)
.+ +.... .+. .+...+.++.|.++..+++++.|+.|++|++...+++..+.+ | ...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~ 235 (397)
T 1sq9_A 156 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 235 (397)
T ss_dssp ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCC
T ss_pred CccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCc
Confidence 88 66655 553 367788889987655888899999999999999999999999 9 999
Q ss_pred eEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeeeeeccc-------------ccccEEEEEEccCCCCCCCCCCcEEE
Q 008467 402 VNCVKWDPTGSLLASCSDD---VTAKIWNMKQDKYVHDLRE-------------HSKEIYTIRWSPTGSGTNNPNQQLIL 465 (564)
Q Consensus 402 i~~v~~~~~~~~las~s~d---g~i~iwd~~~~~~~~~~~~-------------~~~~i~~i~~~p~~~~~~~~~~~~~l 465 (564)
|.+++|+|++++|++++.| +.|++||+++++.+..+.. |...|.+++|+|++. +|
T Consensus 236 i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~l 306 (397)
T 1sq9_A 236 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE---------TL 306 (397)
T ss_dssp EEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS---------EE
T ss_pred cceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCC---------EE
Confidence 9999999999999999999 9999999999999999988 999999999999875 79
Q ss_pred EEEeCCCeEEEEeCCCCeEEEEEe------CC---------------CCCEEEEEEcCCC----------CEEEEEeCCC
Q 008467 466 ASASFDSTVKLWDVELGKLLYSLN------GH---------------REPVYSLAFSPTG----------EYLASGSLDK 514 (564)
Q Consensus 466 ~s~s~dg~i~iwd~~~~~~~~~~~------~h---------------~~~i~~~~~spdg----------~~lasgs~dg 514 (564)
++++.||.|++||+.+++++..+. +| ..+|++++|+|+| ++|++|+.||
T Consensus 307 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg 386 (397)
T 1sq9_A 307 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR 386 (397)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT
T ss_pred EEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCC
Confidence 999999999999999999999999 88 8999999999999 7999999999
Q ss_pred cEEEEeCCCCe
Q 008467 515 SMHIWSLKEGK 525 (564)
Q Consensus 515 ~i~iw~~~~~~ 525 (564)
.|++|++.+|+
T Consensus 387 ~i~iw~~~~g~ 397 (397)
T 1sq9_A 387 SIRWFREAGGK 397 (397)
T ss_dssp EEEEEEEEC--
T ss_pred cEEEEEcCCCC
Confidence 99999998764
No 39
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2e-39 Score=330.86 Aligned_cols=248 Identities=27% Similarity=0.500 Sum_probs=217.5
Q ss_pred ceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467 208 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 287 (564)
Q Consensus 208 ~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 287 (564)
....+.+|...|.+++|+|++++|++|+.|++|+|||+.++.. +.. ...|...|++++|+|++
T Consensus 142 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~-------------~~~----~~~h~~~V~~v~~~p~~ 204 (410)
T 1vyh_C 142 FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC-------------IRT----MHGHDHNVSSVSIMPNG 204 (410)
T ss_dssp CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE-------------EEC----CCCCSSCEEEEEECSSS
T ss_pred EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-------------eEE----EcCCCCCEEEEEEeCCC
Confidence 3567899999999999999999999999999999999875432 111 12456789999999999
Q ss_pred CEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc
Q 008467 288 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 366 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 366 (564)
.+|++|+.||.|++||.. +.....+.+|...|.++.|+|++.+|++|+.|++|++||+.++.....+.
T Consensus 205 ~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~----------- 273 (410)
T 1vyh_C 205 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR----------- 273 (410)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-----------
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEec-----------
Confidence 999999999999999975 56677889999999999999999999999999999999998876554444
Q ss_pred CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC--------------------CCEEEEEeCCCcEEEE
Q 008467 367 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--------------------GSLLASCSDDVTAKIW 426 (564)
Q Consensus 367 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~--------------------~~~las~s~dg~i~iw 426 (564)
+|...|.+++|+|+ +.+|++|+.|++|++|
T Consensus 274 ------------------------------~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iw 323 (410)
T 1vyh_C 274 ------------------------------EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 323 (410)
T ss_dssp ------------------------------CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEE
T ss_pred ------------------------------CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEE
Confidence 45555555555553 7799999999999999
Q ss_pred eCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCE
Q 008467 427 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 506 (564)
Q Consensus 427 d~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~ 506 (564)
|++++.++..+.+|...|.+++|+|++. +|++|+.||+|++||+.+++++..+.+|...|++++|+|++.+
T Consensus 324 d~~~~~~~~~~~~h~~~v~~v~~~~~g~---------~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 394 (410)
T 1vyh_C 324 DVSTGMCLMTLVGHDNWVRGVLFHSGGK---------FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 394 (410)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECSSSS---------CEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSC
T ss_pred ECCCCceEEEEECCCCcEEEEEEcCCCC---------EEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCE
Confidence 9999999999999999999999999875 6899999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEeCC
Q 008467 507 LASGSLDKSMHIWSLK 522 (564)
Q Consensus 507 lasgs~dg~i~iw~~~ 522 (564)
||+|+.||+|+||+++
T Consensus 395 l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 395 VVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEEETTSEEEEEC--
T ss_pred EEEEeCCCcEEEEeCC
Confidence 9999999999999864
No 40
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.1e-38 Score=370.34 Aligned_cols=336 Identities=21% Similarity=0.349 Sum_probs=284.5
Q ss_pred eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
...+.+|...|++++|+|+|++||+|+.||+|+||++.++.. .... ..|...|++++|+|+|+
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~-------------~~~~----~~h~~~v~~~~~s~~~~ 670 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK-------------LLDI----KAHEDEVLCCAFSSDDS 670 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-------------EEEE----CCCSSCEEEEEECTTSS
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE-------------EEEe----ccCCCCEEEEEEecCCC
Confidence 457789999999999999999999999999999999987542 1111 24567899999999999
Q ss_pred EEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCC--CCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEE
Q 008467 289 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 365 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (564)
+|++|+.||.|++|+.. +.....+.+|..+|.+++|+| ++..+++|+.|++|++||+.++.....+..|...+.++.
T Consensus 671 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~ 750 (1249)
T 3sfz_A 671 YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCR 750 (1249)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEE
Confidence 99999999999999975 567778899999999999999 556899999999999999999999999999999999999
Q ss_pred cCCC-ceEEEEeCCCeEEEEEcCCCceeeEe-------------------------------------------------
Q 008467 366 WRNN-VSFATSSTDNMIYVCKIGENRPIKTF------------------------------------------------- 395 (564)
Q Consensus 366 ~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~------------------------------------------------- 395 (564)
|.++ ..+++++.|+.|++|++........+
T Consensus 751 ~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~ 830 (1249)
T 3sfz_A 751 FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSG 830 (1249)
T ss_dssp ECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCC
T ss_pred EecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCC
Confidence 9754 57889999999999998655332211
Q ss_pred ------cCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCC-------------
Q 008467 396 ------AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGT------------- 456 (564)
Q Consensus 396 ------~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~------------- 456 (564)
.+|...|.+++|+|+++++++++.||.|++||+.++..+..+.+|...|.+++|+|++...
T Consensus 831 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 831 LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910 (1249)
T ss_dssp EEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 2778889999999999999999999999999999999999999999999999999987410
Q ss_pred ----------------------------------------------------------CCCCCcEEEEEEeCCCeEEEEe
Q 008467 457 ----------------------------------------------------------NNPNQQLILASASFDSTVKLWD 478 (564)
Q Consensus 457 ----------------------------------------------------------~~~~~~~~l~s~s~dg~i~iwd 478 (564)
.+|+.. ++++|+.||.|++||
T Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~~g~~~g~i~i~d 989 (1249)
T 3sfz_A 911 TKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLE-YVAFGDEDGAIKIIE 989 (1249)
T ss_dssp HHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSS-EEEEEETTSCCEEEE
T ss_pred ccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCC-EEEEEcCCCCEEEEE
Confidence 011111 355566666666666
Q ss_pred CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEE
Q 008467 479 VELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVC 558 (564)
Q Consensus 479 ~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~ 558 (564)
+.+++.+..+.+|..+|++++|+|+|++|++|+.||.|++|++.+++.+........+.+++|++++ .+++++.|+.|.
T Consensus 990 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~ 1068 (1249)
T 3sfz_A 990 LPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVK 1068 (1249)
T ss_dssp TTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSS-EEEEEESSSEEE
T ss_pred cCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCC-cEEEEECCCcEE
Confidence 6667777777889999999999999999999999999999999999887666666789999999976 567778999999
Q ss_pred EEEee
Q 008467 559 VLDFR 563 (564)
Q Consensus 559 v~~~~ 563 (564)
|||++
T Consensus 1069 vwd~~ 1073 (1249)
T 3sfz_A 1069 VWNVI 1073 (1249)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99974
No 41
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.5e-39 Score=325.80 Aligned_cols=293 Identities=19% Similarity=0.343 Sum_probs=243.4
Q ss_pred eEccCCccceEEEEECCC----CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC
Q 008467 210 TILEGHTSEVCACAWSPA----GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 285 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~----~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 285 (564)
.++.+|..+|++++|+|+ ...+++++.++.|++|++.++... ..+.... ...+...|++++|+|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~----------~~~~~~~--~~~~~~~v~~~~~~~ 79 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI----------RLLQSYV--DADADENFYTCAWTY 79 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE----------EEEEEEE--CSCTTCCEEEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE----------Eeeeecc--ccCCCCcEEEEEecc
Confidence 456799999999999994 456777777789999998754321 1111111 122457899999999
Q ss_pred C----CCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCcceeEEEeeccc
Q 008467 286 E----GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 359 (564)
Q Consensus 286 ~----g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 359 (564)
+ |.+|++|+.||.|++|+.. +.....+.+|..+|.+++|+| ++.+|++|+.|++|++||+++++....+
T Consensus 80 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----- 154 (366)
T 3k26_A 80 DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF----- 154 (366)
T ss_dssp CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEE-----
T ss_pred CCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEe-----
Confidence 9 7799999999999999975 566778889999999999999 8999999999999999999876533221
Q ss_pred CeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccc
Q 008467 360 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 439 (564)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~ 439 (564)
..+.+|...|.+++|+|++++|++++.||.|++||+++++....+..
T Consensus 155 ---------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 201 (366)
T 3k26_A 155 ---------------------------------GGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE 201 (366)
T ss_dssp ---------------------------------CSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHH
T ss_pred ---------------------------------cccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccce
Confidence 11257889999999999999999999999999999988765544443
Q ss_pred ----------------------------ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--------
Q 008467 440 ----------------------------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-------- 483 (564)
Q Consensus 440 ----------------------------~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-------- 483 (564)
|...|.+++|+ +. +|++++.||.|++||+.++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~---------~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 270 (366)
T 3k26_A 202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD---------LILSKSCENAIVCWKPGKMEDDIDKIKP 270 (366)
T ss_dssp HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT---------EEEEECSSSEEEEEEESSTTCCGGGCCT
T ss_pred eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC---------EEEEEecCCEEEEEeCCCcccccccccc
Confidence 88999999998 22 78999999999999988763
Q ss_pred ------EEEEEeCCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCe----EEEEEecC---CCEEEEEEccCCCEE
Q 008467 484 ------LLYSLNGHREPVYSLAFSPT--GEYLASGSLDKSMHIWSLKEGK----IVKTYTGN---GGIFEVCWNKEGDKI 548 (564)
Q Consensus 484 ------~~~~~~~h~~~i~~~~~spd--g~~lasgs~dg~i~iw~~~~~~----~~~~~~~~---~~i~~~~w~~~g~~l 548 (564)
.+..+..|..+|++++|+|+ |++|++|+.||.|++||+.+++ ....+..+ ..|.+++|+|+|++|
T Consensus 271 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 350 (366)
T 3k26_A 271 SESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSIL 350 (366)
T ss_dssp TCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred CCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeE
Confidence 47788899999999999999 9999999999999999999875 44466654 679999999999999
Q ss_pred EEEEcCCcEEEEEee
Q 008467 549 AACFANHTVCVLDFR 563 (564)
Q Consensus 549 a~~~~~~~v~v~~~~ 563 (564)
++|+.||.|.|||+.
T Consensus 351 ~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 351 IAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEETTSEEEEEEC-
T ss_pred EEEeCCCEEEEEEec
Confidence 999999999999985
No 42
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-39 Score=357.80 Aligned_cols=328 Identities=9% Similarity=0.091 Sum_probs=247.1
Q ss_pred CccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeec---cccccCCCCeEEEEECCC-CCEE
Q 008467 215 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK---GRTNEKSKDVTTLDWNGE-GTLL 290 (564)
Q Consensus 215 h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~V~~l~~s~~-g~~l 290 (564)
|...|++++|+|++++|++|+.||+|++||+.++... ........ .....|...|++++|+|+ +..|
T Consensus 97 ~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~---------~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l 167 (902)
T 2oaj_A 97 VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS---------SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV 167 (902)
T ss_dssp CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE---------EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc---------cceeccccccccccccCCCCeEEEEEccCCCCEE
Confidence 6789999999999999999999999999999765310 00000000 112346678999999996 5789
Q ss_pred EEEeCCCeEEEEECCC-ceeEeecCC------------------CCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCccee
Q 008467 291 ATGSYDGQARIWSTNG-DLKCTLSKH------------------KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 351 (564)
Q Consensus 291 ~sg~~dg~i~vw~~~~-~~~~~~~~h------------------~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 351 (564)
++|+.||.| +||... .....+..| ...|.+++|+|+|.+|++|+.|++|++||+++++.+
T Consensus 168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 999999999 999864 344455544 578999999999999999999999999999887765
Q ss_pred EEEe-----e-------------cccCeEEEEcC----CC--ceE-----------------------------------
Q 008467 352 QQFE-----F-------------HSGPTLDVDWR----NN--VSF----------------------------------- 372 (564)
Q Consensus 352 ~~~~-----~-------------~~~~~~~~~~~----~~--~~~----------------------------------- 372 (564)
.... . +..++..+.|. ++ ..+
T Consensus 247 ~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~ 326 (902)
T 2oaj_A 247 MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKN 326 (902)
T ss_dssp EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHH
T ss_pred EEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhh
Confidence 4211 0 12235555552 11 122
Q ss_pred -----------------------------------------EEEeCCCeEEEEEcCCCceeeE-----------------
Q 008467 373 -----------------------------------------ATSSTDNMIYVCKIGENRPIKT----------------- 394 (564)
Q Consensus 373 -----------------------------------------~~~~~d~~i~~~~~~~~~~~~~----------------- 394 (564)
++.+.|+.|++|++.++.+...
T Consensus 327 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~ 406 (902)
T 2oaj_A 327 YYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATT 406 (902)
T ss_dssp HHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEE
T ss_pred hhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeE
Confidence 2333345566666544322111
Q ss_pred ------------------------ecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee----e--ecc-----c
Q 008467 395 ------------------------FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV----H--DLR-----E 439 (564)
Q Consensus 395 ------------------------~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~----~--~~~-----~ 439 (564)
+.||...+.+++|+|++++||||+.|++||+||+.++... . .+. +
T Consensus 407 ~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~ 486 (902)
T 2oaj_A 407 SMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKA 486 (902)
T ss_dssp EEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCS
T ss_pred EEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCC
Confidence 2334444455566899999999999999999999876421 0 112 7
Q ss_pred ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-------------------------------------
Q 008467 440 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG------------------------------------- 482 (564)
Q Consensus 440 ~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~------------------------------------- 482 (564)
|...|.+++|+|++. +||+|+.||+|+|||+.++
T Consensus 487 h~~~V~svafspdg~---------~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (902)
T 2oaj_A 487 KELAVDKISFAAETL---------ELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRA 557 (902)
T ss_dssp SSCCEEEEEEETTTT---------EEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGC
T ss_pred CCCceeEEEecCCCC---------eEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccC
Confidence 888999999999986 7999999999999998765
Q ss_pred --------eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe------c-CCCEEEEEEc-----
Q 008467 483 --------KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT------G-NGGIFEVCWN----- 542 (564)
Q Consensus 483 --------~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~------~-~~~i~~~~w~----- 542 (564)
+++..+.+|..+|++|+||||| +||+|+.|++|+|||++++.++.... + ...|++++|+
T Consensus 558 ~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~ 636 (902)
T 2oaj_A 558 PTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYG 636 (902)
T ss_dssp CTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECT
T ss_pred CCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecC
Confidence 3467888999999999999999 99999999999999999888765321 2 3459999999
Q ss_pred cCC---CEEEEEEcCCcEEEEEe
Q 008467 543 KEG---DKIAACFANHTVCVLDF 562 (564)
Q Consensus 543 ~~g---~~la~~~~~~~v~v~~~ 562 (564)
||| .+|++|+.|++|++||+
T Consensus 637 ~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 637 DDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEE
T ss_pred CCCCcceEEEEEecCCcEEEEEE
Confidence 886 89999999999999998
No 43
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.9e-39 Score=312.13 Aligned_cols=254 Identities=25% Similarity=0.403 Sum_probs=208.5
Q ss_pred eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC--
Q 008467 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-- 286 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-- 286 (564)
+.++.+|...|++++|+|+|++||||+.|++|+||++.+.... . +.. ...|...|++++|+++
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~------~-----~~~----l~gH~~~V~~v~~s~~~~ 66 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK------L-----IDT----LTGHEGPVWRVDWAHPKF 66 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC------C-----CEE----ECCCSSCEEEEEECCGGG
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE------E-----EEE----EccccCCeEEEEecCCCc
Confidence 3567899999999999999999999999999999998643110 0 011 2345678999999874
Q ss_pred CCEEEEEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCcceeEEEeecccCe
Q 008467 287 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 361 (564)
Q Consensus 287 g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 361 (564)
+++|++|+.||+|++|+.... ....+..|..+|.+++|+|+ +.+|++++.|++|++||++++...
T Consensus 67 g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~---------- 136 (297)
T 2pm7_B 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT---------- 136 (297)
T ss_dssp CSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB----------
T ss_pred CCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce----------
Confidence 899999999999999998643 44567889999999999997 889999999999999998764210
Q ss_pred EEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC-------------CCEEEEEeCCCcEEEEeC
Q 008467 362 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-------------GSLLASCSDDVTAKIWNM 428 (564)
Q Consensus 362 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~-------------~~~las~s~dg~i~iwd~ 428 (564)
....+.+|...|++++|+|+ +++||+|+.|++|+|||+
T Consensus 137 -----------------------------~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~ 187 (297)
T 2pm7_B 137 -----------------------------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187 (297)
T ss_dssp -----------------------------CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEE
T ss_pred -----------------------------eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEE
Confidence 01235678888899999886 579999999999999999
Q ss_pred CCCe----eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe---EEEEE--eCCCCCEEEEE
Q 008467 429 KQDK----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK---LLYSL--NGHREPVYSLA 499 (564)
Q Consensus 429 ~~~~----~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~--~~h~~~i~~~~ 499 (564)
+++. ....+.+|...|.+++|+|++. ...+|++|+.|++|+|||++.+. ....+ ..|...|.+++
T Consensus 188 ~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~------~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~ 261 (297)
T 2pm7_B 188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVL------LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS 261 (297)
T ss_dssp ETTTTEEEEEEEECCCSSCEEEEEECCCCS------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEE
T ss_pred cCCCceEEEEEEecCCCCceEEEEECCCCC------CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEE
Confidence 8765 5667889999999999999751 11379999999999999987642 22233 46788999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCC
Q 008467 500 FSPTGEYLASGSLDKSMHIWSLK 522 (564)
Q Consensus 500 ~spdg~~lasgs~dg~i~iw~~~ 522 (564)
|+|+|++||+|+.||.|+||+..
T Consensus 262 ~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 262 WSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp ECSSSCCEEEEETTSCEEEEEEC
T ss_pred ECCCCCEEEEEcCCCcEEEEEEC
Confidence 99999999999999999999976
No 44
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-38 Score=310.85 Aligned_cols=288 Identities=26% Similarity=0.361 Sum_probs=249.8
Q ss_pred ceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467 208 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 287 (564)
Q Consensus 208 ~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 287 (564)
....+.+|...|.+++| |++++|++|+.||.|++|++.++.. .... ..+...|++++|+|++
T Consensus 10 ~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~-------------~~~~----~~~~~~v~~~~~~~~~ 71 (313)
T 3odt_A 10 LSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWL-------------GTVV----YTGQGFLNSVCYDSEK 71 (313)
T ss_dssp EEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEE-------------EEEE----EECSSCEEEEEEETTT
T ss_pred HHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEE-------------EEEe----ecCCccEEEEEECCCC
Confidence 34678999999999999 9999999999999999999865421 1111 1235789999999999
Q ss_pred CEEEEEeCCCeEEEEECCC----ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEE
Q 008467 288 TLLATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 363 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 363 (564)
++|++|+.||.+++|+... .....+..|..+|.++.| ++++|++++.|+.|++|| .+.....+..|..++..
T Consensus 72 ~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~ 147 (313)
T 3odt_A 72 ELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWD 147 (313)
T ss_dssp TEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEE
T ss_pred CEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeE
Confidence 9999999999999999643 345678899999999999 577999999999999999 66777778888899988
Q ss_pred EEcC--CCceEEEEeCCCeEEEEEcCCCceeeEecC-CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc
Q 008467 364 VDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 440 (564)
Q Consensus 364 ~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~ 440 (564)
+.|. +...+++++.|+.|++|+ ...++..+.. |...|.+++|+|++. +++++.||.|++||+++++.+..+..|
T Consensus 148 ~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~ 224 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH 224 (313)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC
Confidence 8875 467889999999999999 4566777777 899999999999998 899999999999999999999999999
Q ss_pred cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467 441 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 520 (564)
Q Consensus 441 ~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~ 520 (564)
...|.+++|+|++ .|++++.||.|++||+.+++.+..+..|..+|.+++|+|+|+ +++++.||.|++|+
T Consensus 225 ~~~i~~~~~~~~~----------~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 225 ESFVYCIKLLPNG----------DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp SSCEEEEEECTTS----------CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred CceEEEEEEecCC----------CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence 9999999999976 278999999999999999999999999999999999999999 56799999999999
Q ss_pred CCCCeEEEEEe
Q 008467 521 LKEGKIVKTYT 531 (564)
Q Consensus 521 ~~~~~~~~~~~ 531 (564)
+++++.+....
T Consensus 294 ~~~~~~~~~~~ 304 (313)
T 3odt_A 294 QEKSRWASEDE 304 (313)
T ss_dssp SCGGGCCC---
T ss_pred CCCCceeehhh
Confidence 99887655443
No 45
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.8e-40 Score=383.93 Aligned_cols=342 Identities=21% Similarity=0.295 Sum_probs=290.9
Q ss_pred eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCC--------ce-----------EEEEEeec-
Q 008467 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGP--------LN-----------VLVLKHVK- 268 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~--------~~-----------~~~~~~~~- 268 (564)
+..+.+|...|.+++|+|++++|++++.|+.+++|++.+........... .. ........
T Consensus 875 ~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1249)
T 3sfz_A 875 VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG 954 (1249)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSC
T ss_pred eeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcc
Confidence 35668999999999999999999999999999999975421111000000 00 00000000
Q ss_pred cccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 008467 269 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 347 (564)
Q Consensus 269 ~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~ 347 (564)
.........|++++|+|+++++++|+.+|.|++|+.. +.....+.+|.++|.+++|+|+|++|++++.|++|++||+.+
T Consensus 955 ~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A 955 QIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp CEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT
T ss_pred eEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 0011234579999999999999999999999999975 566677889999999999999999999999999999999999
Q ss_pred cceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEe
Q 008467 348 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 427 (564)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd 427 (564)
+.... +..|...+.++.|.++..+++++.|+.|++|++.+++.+..+.+|.+.|.+++|+|++++|++++.|++|++||
T Consensus 1035 ~~~~~-~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd 1113 (1249)
T 3sfz_A 1035 GDYVF-LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1113 (1249)
T ss_dssp TEEEC-CBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEEC
T ss_pred CceEE-EecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 87663 45677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE---------eCCCCCEEEE
Q 008467 428 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL---------NGHREPVYSL 498 (564)
Q Consensus 428 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---------~~h~~~i~~~ 498 (564)
+.++.++..+.+|...|++++|+|++. +|++|+.||+|++||+.+++.+..+ .+|..+|+++
T Consensus 1114 ~~~~~~~~~l~~h~~~v~~~~~s~dg~---------~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 1184 (1249)
T 3sfz_A 1114 FDLLSPLHELKGHNGCVRCSAFSLDGI---------LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1184 (1249)
T ss_dssp SSSSSCSBCCCCCSSCEEEEEECSSSS---------EEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEE
T ss_pred CCCcceeeeeccCCCcEEEEEECCCCC---------EEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEE
Confidence 999999999999999999999999885 7999999999999999988876654 5788999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 499 AFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 499 ~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
+|||||++|++++ |.|++||+.+++.+..+.. ...|.+++|+|+|++|++++.+|.+.||++
T Consensus 1185 ~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1185 CFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp EECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred EECCCCCEEEECC--CeEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEee
Confidence 9999999999986 8999999999998887764 446889999999999999999999999986
No 46
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=9.4e-39 Score=321.01 Aligned_cols=291 Identities=16% Similarity=0.238 Sum_probs=242.8
Q ss_pred EccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEE
Q 008467 211 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 290 (564)
Q Consensus 211 ~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 290 (564)
++..|..+|++++|+|++++||+|+.|+.|++|++.++.. ...... ..+...|++++|+|++++|
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-----------~~~~~~----~~h~~~v~~~~~~~~~~~l 67 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-----------VQVHEL----KEHNGQVTGVDWAPDSNRI 67 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----------EEEEEE----ECCSSCEEEEEEETTTTEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-----------Eeeeee----cCCCCcccEEEEeCCCCEE
Confidence 3456899999999999999999999999999999875420 011111 2356789999999999999
Q ss_pred EEEeCCCeEEEEECCCce---eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467 291 ATGSYDGQARIWSTNGDL---KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 367 (564)
Q Consensus 291 ~sg~~dg~i~vw~~~~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (564)
++++.||.|++|+..... ...+..|...|.+++|+|++++|++++.|+.|++||+.++.....
T Consensus 68 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~-------------- 133 (372)
T 1k8k_C 68 VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV-------------- 133 (372)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE--------------
T ss_pred EEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCccee--------------
Confidence 999999999999975442 234577999999999999999999999999999999876542110
Q ss_pred CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeC------------------C
Q 008467 368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM------------------K 429 (564)
Q Consensus 368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~------------------~ 429 (564)
......+|...|.+++|+|++++|++|+.||.|++||+ .
T Consensus 134 -----------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 190 (372)
T 1k8k_C 134 -----------------------CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 190 (372)
T ss_dssp -----------------------EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCC
T ss_pred -----------------------eeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccc
Confidence 01123568889999999999999999999999999995 3
Q ss_pred CCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 008467 430 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 509 (564)
Q Consensus 430 ~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~las 509 (564)
.+..+..+..|...|.+++|+|++. +|++++.||.|++||+++++++..+..|..+|.+++|+|++++|++
T Consensus 191 ~~~~~~~~~~~~~~v~~~~~~~~~~---------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 261 (372)
T 1k8k_C 191 FGELMFESSSSCGWVHGVCFSANGS---------RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAA 261 (372)
T ss_dssp TTCEEEECCCCSSCEEEEEECSSSS---------EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEE
T ss_pred hhhheEecCCCCCeEEEEEECCCCC---------EEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEE
Confidence 6778888889999999999999875 7899999999999999999999999999999999999999999998
Q ss_pred EeCCCcEEEEeCCC--CeE--E------------------------------------EEE--ecCCCEEEEEEc-cCC-
Q 008467 510 GSLDKSMHIWSLKE--GKI--V------------------------------------KTY--TGNGGIFEVCWN-KEG- 545 (564)
Q Consensus 510 gs~dg~i~iw~~~~--~~~--~------------------------------------~~~--~~~~~i~~~~w~-~~g- 545 (564)
| .|+.|++|++.+ ++. + ..+ .+...|.+++|. ++|
T Consensus 262 ~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~ 340 (372)
T 1k8k_C 262 G-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKA 340 (372)
T ss_dssp E-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTT
T ss_pred E-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCc
Confidence 8 899999999987 531 0 111 124579999977 666
Q ss_pred --CEEEEEEcCCcEEEEEee
Q 008467 546 --DKIAACFANHTVCVLDFR 563 (564)
Q Consensus 546 --~~la~~~~~~~v~v~~~~ 563 (564)
++|++|+.||.|+|||++
T Consensus 341 ~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 341 KCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp SCSEEEEEETTSEEEEEEHH
T ss_pred ceeeEEEecCCCceEEEEec
Confidence 999999999999999975
No 47
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.2e-37 Score=306.93 Aligned_cols=281 Identities=25% Similarity=0.413 Sum_probs=245.1
Q ss_pred ccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEECCC------ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEE
Q 008467 272 NEKSKDVTTLDWNGE-GTLLATGSYDGQARIWSTNG------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 344 (564)
Q Consensus 272 ~~~~~~V~~l~~s~~-g~~l~sg~~dg~i~vw~~~~------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd 344 (564)
.+|.+.|++++|+|+ +++|+||+.||+|+||+... .....+.+|..+|.+++|+|++++|++++.|+.|++|+
T Consensus 35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~ 114 (340)
T 4aow_A 35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD 114 (340)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEe
Confidence 456789999999997 68999999999999999653 23457889999999999999999999999999999999
Q ss_pred CCCcceeEEEeecccCeEEEEcC-CCceEEEEeCCCeEEEEEcCCCce-eeEecCCCcceEEEEECCCC--CEEEEEeCC
Q 008467 345 VKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDPTG--SLLASCSDD 420 (564)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~h~~~i~~v~~~~~~--~~las~s~d 420 (564)
............+........+. ....+++++.|+.+++|+...... ...+.+|...+.+++|++++ .++++++.|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d 194 (340)
T 4aow_A 115 LTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD 194 (340)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred ecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCC
Confidence 99888777777777776666664 456788999999999999876543 44567899999999998875 578999999
Q ss_pred CcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEE
Q 008467 421 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF 500 (564)
Q Consensus 421 g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~ 500 (564)
+.|++||+.+++.+..+.+|...|++++|+|++. +|++|+.||+|++||+++.+.+..+..+ ..|.+++|
T Consensus 195 ~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~---------~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~ 264 (340)
T 4aow_A 195 KLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS---------LCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCF 264 (340)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---------EEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEE
T ss_pred CEEEEEECCCCceeeEecCCCCcEEEEEECCCCC---------EEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeec
Confidence 9999999999999999999999999999999875 7999999999999999999999888855 58999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec----------CCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 501 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG----------NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 501 spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~----------~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
+|++.+++ ++.|+.|++||++++.++..+.. ...|++++|+|+|++||+|+.||.|+|||++
T Consensus 265 ~~~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 265 SPNRYWLC-AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp CSSSSEEE-EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred CCCCceee-ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 99987665 55699999999999888777642 3568999999999999999999999999986
No 48
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-40 Score=347.20 Aligned_cols=310 Identities=14% Similarity=0.124 Sum_probs=230.2
Q ss_pred CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC------CCEEEEEeCCCeEEE
Q 008467 228 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE------GTLLATGSYDGQARI 301 (564)
Q Consensus 228 ~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~------g~~l~sg~~dg~i~v 301 (564)
+++||+|+.|++|+||++.++... ....... ..+...|.+++|+|+ +.+||+|+.||+|+|
T Consensus 173 ~~~laS~s~D~tI~iWd~~~~~~~---------~~~~~~l----~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgtvrl 239 (524)
T 2j04_B 173 LEMFDKEKHSSCIQIFKMNTSTLH---------CVKVQTI----VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINF 239 (524)
T ss_dssp ---------CEEEEEEEEETTTCC---------EEEEEEE----EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEE
T ss_pred hhhhccCCCCceEEEEEccCCCCC---------ceEEEEE----EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEE
Confidence 334555678899999998764321 0000001 123467999999997 579999999999999
Q ss_pred EECCCce------------eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc-eeEEEeecccCeEEE--Ec
Q 008467 302 WSTNGDL------------KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDV--DW 366 (564)
Q Consensus 302 w~~~~~~------------~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~--~~ 366 (564)
|+..... ...+.+|..+|++++|+++ ..|++|+.||+|++||++++. ....+..|...+.++ .|
T Consensus 240 Wd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~ 318 (524)
T 2j04_B 240 LEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAY 318 (524)
T ss_dssp EECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEEC
T ss_pred EEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEc
Confidence 9976431 2367789999999999986 489999999999999998764 345678899999998 56
Q ss_pred CCC--ceEEEEeCCCeEEEEEcCCCceeeEecCCCc--ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccc
Q 008467 367 RNN--VSFATSSTDNMIYVCKIGENRPIKTFAGHQG--EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK 442 (564)
Q Consensus 367 ~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~--~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~ 442 (564)
.++ ..|++++.|++|++|++...+++..+.+|.. .|.+++|+|+++.+++++.|++|++||++++.++..+.+|..
T Consensus 319 s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~ 398 (524)
T 2j04_B 319 SDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET 398 (524)
T ss_dssp CTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSS
T ss_pred CCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCC
Confidence 654 5789999999999999998887777877764 588999999999999999999999999999988888899999
Q ss_pred cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC-----CCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008467 443 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-----HREPVYSLAFSPTGEYLASGSLDKSMH 517 (564)
Q Consensus 443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----h~~~i~~~~~spdg~~lasgs~dg~i~ 517 (564)
.|++++|+|++. +|++|+.||+|++||+..+ .+..++. +...|++++|+|+|..+.. ..+ +.
T Consensus 399 ~V~sva~Sp~g~---------~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~~--~~ 465 (524)
T 2j04_B 399 TITAIGVSRLHP---------MVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DSS--YE 465 (524)
T ss_dssp CEEEEECCSSCC---------BCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEE-CCC--CC
T ss_pred ceEEEEeCCCCC---------eEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEc-cCC--ce
Confidence 999999999875 6899999999999998643 2211111 1225789999999996632 222 34
Q ss_pred EEeCC-CCeEEEEEec-CCCEEEEEEccCCC---EEEEEEcCCcEEEEEeeC
Q 008467 518 IWSLK-EGKIVKTYTG-NGGIFEVCWNKEGD---KIAACFANHTVCVLDFRM 564 (564)
Q Consensus 518 iw~~~-~~~~~~~~~~-~~~i~~~~w~~~g~---~la~~~~~~~v~v~~~~~ 564 (564)
+|... ++.++.++.+ ...|++|+|||++. .||+|+.+|.|+||+++.
T Consensus 466 ~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 466 VYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 44433 4555666655 45799999999964 999999999999999873
No 49
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.4e-38 Score=321.25 Aligned_cols=280 Identities=18% Similarity=0.309 Sum_probs=252.6
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc-------eeEeecCCCCCEEEEEeCCC----C---CEEEEeeCC
Q 008467 272 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-------LKCTLSKHKGPIFSLKWNKK----G---DYLLTGSCD 337 (564)
Q Consensus 272 ~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-------~~~~~~~h~~~V~~l~~~~~----~---~~l~s~s~D 337 (564)
..|...|++++|+| ++|++|+.||.|++|+.... ....+.+|..+|.+++|+|+ + .+|++++.|
T Consensus 13 ~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d 90 (397)
T 1sq9_A 13 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS 90 (397)
T ss_dssp SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred hhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCC
Confidence 35678999999999 89999999999999998654 46778899999999999999 9 999999999
Q ss_pred CcEEEEECCCcce-----eEEEeec-----ccCeEEEEcC----CC-ce-EEEEeCCCeEEEEEcCC------Cceee--
Q 008467 338 KTAIVWDVKTEEW-----KQQFEFH-----SGPTLDVDWR----NN-VS-FATSSTDNMIYVCKIGE------NRPIK-- 393 (564)
Q Consensus 338 ~~v~iwd~~~~~~-----~~~~~~~-----~~~~~~~~~~----~~-~~-~~~~~~d~~i~~~~~~~------~~~~~-- 393 (564)
++|++||+.++.. ...+..+ ...+.++.|. ++ .. +++++.|+.|++|++.. ...+.
T Consensus 91 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 170 (397)
T 1sq9_A 91 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWS 170 (397)
T ss_dssp SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCC
T ss_pred CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeecc
Confidence 9999999998886 7777777 5889999998 44 45 88899999999999988 66665
Q ss_pred ---Eec-------CCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccc---c---cccEEEEEEccCCCCCC
Q 008467 394 ---TFA-------GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE---H---SKEIYTIRWSPTGSGTN 457 (564)
Q Consensus 394 ---~~~-------~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~---~---~~~i~~i~~~p~~~~~~ 457 (564)
.+. .|...|.+++|+|++ +|++|+.||.|++||+++++.+..+.. | ...|.+++|+|++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~--- 246 (397)
T 1sq9_A 171 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS--- 246 (397)
T ss_dssp CEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT---
T ss_pred CcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCC---
Confidence 774 488999999999999 999999999999999999999999988 8 99999999999875
Q ss_pred CCCCcEEEEEEeCC---CeEEEEeCCCCeEEEEEeC-------------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467 458 NPNQQLILASASFD---STVKLWDVELGKLLYSLNG-------------HREPVYSLAFSPTGEYLASGSLDKSMHIWSL 521 (564)
Q Consensus 458 ~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~-------------h~~~i~~~~~spdg~~lasgs~dg~i~iw~~ 521 (564)
+|++++.| |.|++||+++++.+..+.+ |..+|.+++|+|++++|++|+.||.|++||+
T Consensus 247 ------~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 247 ------LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp ------EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred ------EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 78899999 9999999999999999998 9999999999999999999999999999999
Q ss_pred CCCeEEEEEe------c----------------CCCEEEEEEccCC----------CEEEEEEcCCcEEEEEee
Q 008467 522 KEGKIVKTYT------G----------------NGGIFEVCWNKEG----------DKIAACFANHTVCVLDFR 563 (564)
Q Consensus 522 ~~~~~~~~~~------~----------------~~~i~~~~w~~~g----------~~la~~~~~~~v~v~~~~ 563 (564)
.+++.+..+. . ...|.+++|+|+| ++|++|+.||.|.|||++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 321 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred CCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 9999999988 4 4679999999999 799999999999999986
No 50
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=9.3e-39 Score=318.99 Aligned_cols=292 Identities=20% Similarity=0.344 Sum_probs=240.6
Q ss_pred eEccCCccceEEEEECCCCC-EEEEEEC---CCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC
Q 008467 210 TILEGHTSEVCACAWSPAGS-LLASGSG---DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 285 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~~~-~lasgs~---D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 285 (564)
.++.+|...|++++|+|++. ++++|+. |+.|+||++.++... .... ..+...|++++|+|
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~-----------~~~~-----~~~~~~v~~~~~~~ 75 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK-----------LLRE-----IEKAKPIKCGTFGA 75 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE-----------EEEE-----EEESSCEEEEECTT
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc-----------ceee-----ecccCcEEEEEEcC
Confidence 46688999999999999986 5556665 999999999765311 0111 12357899999999
Q ss_pred C---CCEEEEEeCCCeEEEEECCC-c-eeEeecCCCCCEEEEE------eCCCCCEEEEeeCCCcEEEEECCCcc-eeEE
Q 008467 286 E---GTLLATGSYDGQARIWSTNG-D-LKCTLSKHKGPIFSLK------WNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQ 353 (564)
Q Consensus 286 ~---g~~l~sg~~dg~i~vw~~~~-~-~~~~~~~h~~~V~~l~------~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~ 353 (564)
+ |.+|++|+.||.|++|+... . ....+.+|..+|.++. |+|++++|++++.|++|++||++++. ....
T Consensus 76 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 155 (357)
T 3i2n_A 76 TSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVAN 155 (357)
T ss_dssp CCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEE
T ss_pred CCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCccee
Confidence 8 79999999999999999764 3 5678889999999995 57899999999999999999999886 6666
Q ss_pred Eeeccc----CeEEEE----c-CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC---CCCEEEEEeCCC
Q 008467 354 FEFHSG----PTLDVD----W-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP---TGSLLASCSDDV 421 (564)
Q Consensus 354 ~~~~~~----~~~~~~----~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~---~~~~las~s~dg 421 (564)
+..+.+ .+.++. | .+...+++++.|+.|++|++...+... ...|...|.+++|+| ++.+|++|+.||
T Consensus 156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 234 (357)
T 3i2n_A 156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSLEG 234 (357)
T ss_dssp ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECCCC
Confidence 665544 667776 4 355678889999999999999887644 467889999999999 999999999999
Q ss_pred cEEEEeCCCCeeeeecc-----cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--------------
Q 008467 422 TAKIWNMKQDKYVHDLR-----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-------------- 482 (564)
Q Consensus 422 ~i~iwd~~~~~~~~~~~-----~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-------------- 482 (564)
.|++||++++.....+. .|...|++++|+|++. .+|++|+.||.|++||++.+
T Consensus 235 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~ 306 (357)
T 3i2n_A 235 KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNR--------ELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMG 306 (357)
T ss_dssp EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEE--------EEEEEEETTSEEEEEEEECCSCC--CCTTSCCCC
T ss_pred eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCC--------cEEEEEeCCCcEEEeecCCCcccccccCCCCccc
Confidence 99999998876655544 8999999999999763 37999999999999998753
Q ss_pred -----eEEEEEeCCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeE
Q 008467 483 -----KLLYSLNGHREPVYSLAFSPTGEYLA-SGSLDKSMHIWSLKEGKI 526 (564)
Q Consensus 483 -----~~~~~~~~h~~~i~~~~~spdg~~la-sgs~dg~i~iw~~~~~~~ 526 (564)
+.+..+.+|..+|++++|+|+|++|+ +|+.||.|+||++.+.++
T Consensus 307 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 307 VAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp CCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred cccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 46778899999999999999999998 899999999999987654
No 51
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.7e-38 Score=312.45 Aligned_cols=244 Identities=23% Similarity=0.489 Sum_probs=220.4
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCccee
Q 008467 273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 351 (564)
Q Consensus 273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 351 (564)
.|...|++++|+|++++|++|+.||.|++|+.. +.....+..|...|.+++|+|++++|++|+.|+.+++||+.+....
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~ 132 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN 132 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc
Confidence 356789999999999999999999999999965 5666778899999999999999999999999999999998764210
Q ss_pred EEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008467 352 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 431 (564)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~ 431 (564)
......+.+|.+.|.++.|++++. +++++.|++|++||+.++
T Consensus 133 -------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~ 174 (340)
T 1got_B 133 -------------------------------------VRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETG 174 (340)
T ss_dssp -------------------------------------CEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTT
T ss_pred -------------------------------------ceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCC
Confidence 112345778999999999998775 789999999999999999
Q ss_pred eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 008467 432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS 511 (564)
Q Consensus 432 ~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs 511 (564)
..+..+.+|...|.+++|+|++. +|++|+.|++|++||+++++++..+.+|..+|++++|+|+|++|++|+
T Consensus 175 ~~~~~~~~h~~~v~~~~~~~~~~---------~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s 245 (340)
T 1got_B 175 QQTTTFTGHTGDVMSLSLAPDTR---------LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred cEEEEEcCCCCceEEEEECCCCC---------EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc
Confidence 99999999999999999999875 799999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCeEEEEEecC---CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 512 LDKSMHIWSLKEGKIVKTYTGN---GGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 512 ~dg~i~iw~~~~~~~~~~~~~~---~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
.||+|++||+++++.+..+... .+|.+++|+|+|++|++|+.|+.|.|||++
T Consensus 246 ~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~ 300 (340)
T 1got_B 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcc
Confidence 9999999999999888887643 369999999999999999999999999974
No 52
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.6e-37 Score=304.71 Aligned_cols=285 Identities=18% Similarity=0.340 Sum_probs=249.0
Q ss_pred ccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEE
Q 008467 212 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 291 (564)
Q Consensus 212 l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~ 291 (564)
..+|...|.+++|+|++++|++++ ||.+++|++.++..... .. .+. ...+...|++++|+|++++|+
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~-----~~--~~~-----~~~~~~~v~~~~~~~~~~~l~ 113 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP-----VS--QLD-----CLNRDNYIRSCKLLPDGCTLI 113 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC-----SE--EEE-----CSCTTSBEEEEEECTTSSEEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceee-----ee--ccc-----ccCCCCcEEEEEEcCCCCEEE
Confidence 347999999999999999999998 99999999976542111 10 110 113467899999999999999
Q ss_pred EEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC
Q 008467 292 TGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 368 (564)
Q Consensus 292 sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 368 (564)
+++.||.|++|+.... ....+..|...|.+++|+|++++|++++.|+.|++||+++++....+..|...+..+.|.+
T Consensus 114 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 193 (337)
T 1gxr_A 114 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193 (337)
T ss_dssp EEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred EEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC
Confidence 9999999999998653 4556788999999999999999999999999999999999999988988999999999975
Q ss_pred C-ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEE
Q 008467 369 N-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 447 (564)
Q Consensus 369 ~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i 447 (564)
+ ..+++++.|+.|++|++...+++..+. |...+.+++|+|++++|++++.|+.|++||+.+.... .+..|...|.++
T Consensus 194 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~ 271 (337)
T 1gxr_A 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSL 271 (337)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEE
T ss_pred CCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEE
Confidence 4 578889999999999999988877764 7788999999999999999999999999999987654 567899999999
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467 448 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 521 (564)
Q Consensus 448 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~ 521 (564)
+|+|++. +|++++.||.|++||+.+++.+... .|..+|.+++|+|++++|++++.||.|++|++
T Consensus 272 ~~~~~~~---------~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 272 KFAYCGK---------WFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EECTTSS---------EEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EECCCCC---------EEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 9999875 7899999999999999999887555 47889999999999999999999999999986
No 53
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.3e-39 Score=332.02 Aligned_cols=286 Identities=18% Similarity=0.290 Sum_probs=230.8
Q ss_pred EccCCccceEEEEECCC-CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-CCC
Q 008467 211 ILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGT 288 (564)
Q Consensus 211 ~l~~h~~~V~~~~~sp~-~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~ 288 (564)
...+|...|+|++|||. +++||+|+.||.|+|||+.++... ... ...+|...|++|+|+| ++.
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-----------~~~----~~~gH~~~V~~l~f~p~~~~ 178 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-----------TFI----KGIGAGGSITGLKFNPLNTN 178 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-----------EEE----CCCSSSCCCCEEEECSSCTT
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-----------eEE----EccCCCCCEEEEEEeCCCCC
Confidence 45678899999999994 689999999999999998765321 011 1234678899999998 789
Q ss_pred EEEEEeCCCeEEEEECCCceeEeecC---CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEE
Q 008467 289 LLATGSYDGQARIWSTNGDLKCTLSK---HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 365 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~~~~~~~~~~---h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (564)
+|++|+.||+|++||..+.....+.. +...+.+++|+|++.+|++|+.||+|++||++..
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~----------------- 241 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK----------------- 241 (435)
T ss_dssp EEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-----------------
T ss_pred EEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-----------------
Confidence 99999999999999998765544432 3456789999999999999999999999998642
Q ss_pred cCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeeeee---ccccc
Q 008467 366 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHD---LREHS 441 (564)
Q Consensus 366 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~las~s~dg~i~iwd~~~~~~~~~---~~~~~ 441 (564)
.+..+.+|...|++++|+|++. +|++|+.|++|+|||+++.+.... ..+|.
T Consensus 242 -------------------------~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~ 296 (435)
T 4e54_B 242 -------------------------ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHR 296 (435)
T ss_dssp -------------------------BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCS
T ss_pred -------------------------eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeecc
Confidence 2234678999999999999986 788999999999999987664433 35789
Q ss_pred ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCC------CEEEEEEcCCCCEEEEEeC---
Q 008467 442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE------PVYSLAFSPTGEYLASGSL--- 512 (564)
Q Consensus 442 ~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~------~i~~~~~spdg~~lasgs~--- 512 (564)
..|++++|+|++. +|++|+.||+|+|||+.++.+...+..|.. .+..+.|+|++.++++++.
T Consensus 297 ~~v~~~~~spdg~---------~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 367 (435)
T 4e54_B 297 HPVNAACFSPDGA---------RLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDP 367 (435)
T ss_dssp SCEEECCBCTTSS---------EEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCT
T ss_pred ccccceeECCCCC---------eeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCC
Confidence 9999999999875 799999999999999999888877766542 2345677888777776642
Q ss_pred ---------CCcEEEEeCCCCeEEEEEec--CCCEEEE-EEccCCCEEEEEEcCCcEEEEEee
Q 008467 513 ---------DKSMHIWSLKEGKIVKTYTG--NGGIFEV-CWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 513 ---------dg~i~iw~~~~~~~~~~~~~--~~~i~~~-~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
++.|++||..+|+++..+.. ...|.++ +|+|+|++||+|+ |+.|.|||++
T Consensus 368 ~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~ 429 (435)
T 4e54_B 368 NFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQ 429 (435)
T ss_dssp TSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC
T ss_pred CeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECC
Confidence 35799999999999887743 3457776 6999999999885 7799999975
No 54
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.6e-38 Score=306.25 Aligned_cols=249 Identities=19% Similarity=0.333 Sum_probs=225.2
Q ss_pred ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCC-ceEEEEeCCCeEEEEE
Q 008467 307 DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCK 385 (564)
Q Consensus 307 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~ 385 (564)
.+..++.+|.+.|.+++|+|++++|++|+.|++|++||+.++.....+..|..++..+.|.++ ..+++++.|+.|++|+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 345678899999999999999999999999999999999999999999999999999988654 5788999999999999
Q ss_pred cCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-eeeeecccccccEEEEEEccCCCCCCCCCCcEE
Q 008467 386 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI 464 (564)
Q Consensus 386 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~-~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~ 464 (564)
+.+++.+..+.+|.+.|++++|+|++++|++|+.|++|++||++++ .....+.+|...|.+++|+|... .+
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~--------~~ 155 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP--------ST 155 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCT--------TE
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCC--------CE
Confidence 9999999999999999999999999999999999999999999877 45567889999999999998532 27
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEEEe-CCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEE
Q 008467 465 LASASFDSTVKLWDVELGKLLYSLN-GHREPVYSLAFSP--TGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVC 540 (564)
Q Consensus 465 l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~~~~sp--dg~~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~ 540 (564)
|++|+.|++|++||++.+.....+. +|...|..++|+| ++.+|++|+.|++|++||+++++++.++.++ ..|..++
T Consensus 156 l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~ 235 (304)
T 2ynn_A 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV 235 (304)
T ss_dssp EEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred EEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEE
Confidence 9999999999999998877665554 5667899999987 7889999999999999999999999999875 4689999
Q ss_pred EccCCCEEEEEEcCCcEEEEEee
Q 008467 541 WNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 541 w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
|+|+++.|++|+.|+.|+|||++
T Consensus 236 ~~p~~~~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 236 FHPTLPIIISGSEDGTLKIWNSS 258 (304)
T ss_dssp ECSSSSEEEEEETTSCEEEEETT
T ss_pred ECCCCCEEEEEcCCCeEEEEECC
Confidence 99999999999999999999975
No 55
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=328.62 Aligned_cols=302 Identities=14% Similarity=0.273 Sum_probs=232.4
Q ss_pred CCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccc--------cCCCCeEEEEECC
Q 008467 214 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN--------EKSKDVTTLDWNG 285 (564)
Q Consensus 214 ~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~V~~l~~s~ 285 (564)
.|.+.|++++|+|+|++||+|+.||.|+||++.++........... .......++.. .....|++++|+|
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~--~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEY--NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCE--EEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccce--eEecccccccccccccccccccCceEEEEEcC
Confidence 3678999999999999999999999999999987542211111111 11122222110 0016799999999
Q ss_pred CC--CEEEEEeCCCeEEEEECCCcee-----------------------------------------EeecCCCCCEEEE
Q 008467 286 EG--TLLATGSYDGQARIWSTNGDLK-----------------------------------------CTLSKHKGPIFSL 322 (564)
Q Consensus 286 ~g--~~l~sg~~dg~i~vw~~~~~~~-----------------------------------------~~~~~h~~~V~~l 322 (564)
++ .+|++++.||.|++|+...... ....+|..+|.++
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 98 8999999999999999653211 1246899999999
Q ss_pred EeCCCCCEEEEeeCCCcEEEEECCCc-ceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcc
Q 008467 323 KWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE 401 (564)
Q Consensus 323 ~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~ 401 (564)
+|+|++++|++| .|++|++||+++. ..... .++. ...+.+|...
T Consensus 184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~------------------------------~~~~----~~~~~~~~~~ 228 (447)
T 3dw8_B 184 SINSDYETYLSA-DDLRINLWHLEITDRSFNI------------------------------VDIK----PANMEELTEV 228 (447)
T ss_dssp EECTTSSEEEEE-CSSEEEEEETTEEEEEEEE------------------------------EECC----CSSGGGCCCC
T ss_pred EEcCCCCEEEEe-CCCeEEEEECCCCCceeee------------------------------eecc----cccccccCcc
Confidence 999999999998 7999999999742 21111 1111 1136689999
Q ss_pred eEEEEECCCC-CEEEEEeCCCcEEEEeCCCCee----eeecccccc------------cEEEEEEccCCCCCCCCCCcEE
Q 008467 402 VNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKY----VHDLREHSK------------EIYTIRWSPTGSGTNNPNQQLI 464 (564)
Q Consensus 402 i~~v~~~~~~-~~las~s~dg~i~iwd~~~~~~----~~~~~~~~~------------~i~~i~~~p~~~~~~~~~~~~~ 464 (564)
|++++|+|++ ++|++|+.||+|++||++++.. +..+..|.. .|.+++|+|++. +
T Consensus 229 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---------~ 299 (447)
T 3dw8_B 229 ITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR---------Y 299 (447)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS---------E
T ss_pred eEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC---------E
Confidence 9999999998 9999999999999999998876 677777775 899999999875 7
Q ss_pred EEEEeCCCeEEEEeCCC-CeEEEEEeCCCCC---------------EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 008467 465 LASASFDSTVKLWDVEL-GKLLYSLNGHREP---------------VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 528 (564)
Q Consensus 465 l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~---------------i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~ 528 (564)
|++++. +.|++||+++ ++++..+.+|... +..++|+|+|++|++|+.||.|++||+.+++.+.
T Consensus 300 l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 300 MMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp EEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred EEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence 888888 9999999997 8888888888632 3359999999999999999999999999988764
Q ss_pred EEe---------------------------------cCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 529 TYT---------------------------------GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 529 ~~~---------------------------------~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
... ....|..++|+|+|+.||+++.|+ +.+|.-+
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 379 LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred eeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 221 123578899999999999998775 8888754
No 56
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.1e-37 Score=315.00 Aligned_cols=342 Identities=17% Similarity=0.226 Sum_probs=243.3
Q ss_pred ceeEccCCccceEEEEECC-CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-
Q 008467 208 DVTILEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG- 285 (564)
Q Consensus 208 ~~~~l~~h~~~V~~~~~sp-~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~- 285 (564)
...++.+|.+.|++++|+| ++++||+|+.||.|++|++.++......... ............+...|++++|+|
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~ 110 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK----AVCSIGRDHPDVHRYSVETVQWYPH 110 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC----EEEEECTTCTTCCSSCEEEEEECTT
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc----ccccccccccccCCCcEEEEEEccC
Confidence 3467789999999999999 9999999999999999999876533211100 001111122234678899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCC---CEEEEeeCCCcEEEEECCCcceeEEEeecccCeE
Q 008467 286 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG---DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 362 (564)
Q Consensus 286 ~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~---~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 362 (564)
++.+|++++.||.|++|+...........+...+.++.|++.+ .++++++.|+.|++||++++.....+..|...+.
T Consensus 111 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~ 190 (408)
T 4a11_B 111 DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEIL 190 (408)
T ss_dssp CTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEE
T ss_pred CCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEE
Confidence 7889999999999999998765444444588899999999854 4999999999999999999999999999999999
Q ss_pred EEEcCCCc--eEEEEeCCCeEEEEEcCCCc-eeeEe---------------cCCCcceEEEEECCCCCEEEEEeCCCcEE
Q 008467 363 DVDWRNNV--SFATSSTDNMIYVCKIGENR-PIKTF---------------AGHQGEVNCVKWDPTGSLLASCSDDVTAK 424 (564)
Q Consensus 363 ~~~~~~~~--~~~~~~~d~~i~~~~~~~~~-~~~~~---------------~~h~~~i~~v~~~~~~~~las~s~dg~i~ 424 (564)
++.|.++. .+++++.|+.|++|++.... ++..+ .+|...|.+++|+|++++|++++.||.|+
T Consensus 191 ~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 270 (408)
T 4a11_B 191 AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR 270 (408)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEE
Confidence 99997664 48899999999999997654 33333 57889999999999999999999999999
Q ss_pred EEeCCCCeeeeecccccc----cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEE
Q 008467 425 IWNMKQDKYVHDLREHSK----EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF 500 (564)
Q Consensus 425 iwd~~~~~~~~~~~~~~~----~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~ 500 (564)
+||+.+++....+..+.. ......+.... ...++.++.|+.|++||+.+++.+..+.+|..+|++++|
T Consensus 271 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 342 (408)
T 4a11_B 271 LWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGC--------SSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVF 342 (408)
T ss_dssp EEETTTCCBCCCCCCCCCCCCSSCCCCEECCSS--------SSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred EEECCCCccceeccccccccccccceeEEecCC--------CceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEE
Confidence 999998876544332211 00111111111 113566778999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccC-CCEEEEEEcCCcEEEEEee
Q 008467 501 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE-GDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 501 spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~-g~~la~~~~~~~v~v~~~~ 563 (564)
+|+|++|++|+.||.|++|++.+++.+........ ...+++. ....+.+..++.+.||+..
T Consensus 343 s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 343 QSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTT--KSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ETTTTEEEEEETTSCEEEEEECC-----------------------------------------
T ss_pred cCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEe--ccccccccceeecccCccCceeecCCc
Confidence 99999999999999999999999887765433221 2234443 2344556678899999754
No 57
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.3e-37 Score=306.42 Aligned_cols=246 Identities=26% Similarity=0.403 Sum_probs=216.4
Q ss_pred ccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEECCC------ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEE
Q 008467 272 NEKSKDVTTLDWNGEG-TLLATGSYDGQARIWSTNG------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 344 (564)
Q Consensus 272 ~~~~~~V~~l~~s~~g-~~l~sg~~dg~i~vw~~~~------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd 344 (564)
..|...|++++|+|++ ++|++|+.||.|++|+..+ .....+.+|..+|.+++|+|++.+|++|+.|++|++||
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd 93 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD 93 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 4567899999999965 8999999999999998642 23557889999999999999999999999999999999
Q ss_pred CCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEE
Q 008467 345 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 424 (564)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~ 424 (564)
+.+++. +..+.+|...|.+++|+|++.+|++|+.|++|+
T Consensus 94 ~~~~~~-----------------------------------------~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~ 132 (319)
T 3frx_A 94 VATGET-----------------------------------------YQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132 (319)
T ss_dssp TTTTEE-----------------------------------------EEEEECCSSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred CCCCCe-----------------------------------------eEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 987643 345678999999999999999999999999999
Q ss_pred EEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCC
Q 008467 425 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG 504 (564)
Q Consensus 425 iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg 504 (564)
+||++. .++..+.+|...|.++.|.|..... ....+|++++.|++|++||+++++....+.+|..+|++++|+|+|
T Consensus 133 vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~---~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g 208 (319)
T 3frx_A 133 VWTIKG-QCLATLLGHNDWVSQVRVVPNEKAD---DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208 (319)
T ss_dssp EEETTS-CEEEEECCCSSCEEEEEECCC---------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTS
T ss_pred EEECCC-CeEEEEeccCCcEEEEEEccCCCCC---CCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCC
Confidence 999974 5677888999999999999865321 122378999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 505 EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 505 ~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
++||+|+.||.|+|||+.+++.+..+.....+.+++|+|+|.+||++..+ .+.||++.
T Consensus 209 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~ 266 (319)
T 3frx_A 209 TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLD 266 (319)
T ss_dssp SEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEET
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeC
Confidence 99999999999999999999999999888899999999999999998765 58898864
No 58
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.5e-38 Score=312.57 Aligned_cols=257 Identities=29% Similarity=0.518 Sum_probs=207.2
Q ss_pred EccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEE
Q 008467 211 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 290 (564)
Q Consensus 211 ~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 290 (564)
...+|...|.+++|+|++++||+|+.|++++||++..+.. ...... ..|...|++++|+|++++|
T Consensus 56 ~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~-----------~~~~~~----~~h~~~v~~v~~sp~~~~l 120 (345)
T 3fm0_A 56 LSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF-----------ECVTTL----EGHENEVKSVAWAPSGNLL 120 (345)
T ss_dssp ECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E-----------EEEEEE----CCCSSCEEEEEECTTSSEE
T ss_pred eccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe-----------EEEEEc----cCCCCCceEEEEeCCCCEE
Confidence 4478999999999999999999999999999999865321 111122 2456789999999999999
Q ss_pred EEEeCCCeEEEEECCCc----eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc
Q 008467 291 ATGSYDGQARIWSTNGD----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 366 (564)
Q Consensus 291 ~sg~~dg~i~vw~~~~~----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 366 (564)
++|+.||.|++|+.... ....+..|...|.+++|+|++.+|++|+.|++|++||+.++.+.
T Consensus 121 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~--------------- 185 (345)
T 3fm0_A 121 ATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWV--------------- 185 (345)
T ss_dssp EEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEE---------------
T ss_pred EEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEE---------------
Confidence 99999999999997532 34567899999999999999999999999999999998664321
Q ss_pred CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC---------------
Q 008467 367 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD--------------- 431 (564)
Q Consensus 367 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~--------------- 431 (564)
++..+.+|...|.+++|+|++++|++|+.|++|+||+....
T Consensus 186 ------------------------~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~ 241 (345)
T 3fm0_A 186 ------------------------CCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSW 241 (345)
T ss_dssp ------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEE
T ss_pred ------------------------EEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcc
Confidence 23456789999999999999999999999999999996321
Q ss_pred eeeeeccc-ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--------E-EEEEeCCCCCEEEEEEc
Q 008467 432 KYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--------L-LYSLNGHREPVYSLAFS 501 (564)
Q Consensus 432 ~~~~~~~~-~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--------~-~~~~~~h~~~i~~~~~s 501 (564)
.++..+.+ |...|++++|+|++. .|++++.|+.|++|+...+. . .....+|...|++++|+
T Consensus 242 ~~~~~~~~~h~~~v~~v~~~~~~~---------~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~ 312 (345)
T 3fm0_A 242 KCICTLSGFHSRTIYDIAWCQLTG---------ALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN 312 (345)
T ss_dssp EEEEEECSSCSSCEEEEEECTTTC---------CEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEEC
T ss_pred ceeEEecCCCCCcEEEEEEecCCC---------EEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEe
Confidence 23334444 888999999999875 68999999999999986542 1 22335899999999999
Q ss_pred CCC-CEEEEEeCCCcEEEEeCCCCeEEEEE
Q 008467 502 PTG-EYLASGSLDKSMHIWSLKEGKIVKTY 530 (564)
Q Consensus 502 pdg-~~lasgs~dg~i~iw~~~~~~~~~~~ 530 (564)
|++ .+||+||.||+|++|++.+++.+..+
T Consensus 313 p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 313 PKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp SSSTTEEEEEETTSCEEEEEECC-------
T ss_pred CCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 998 59999999999999999987765443
No 59
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1e-37 Score=303.88 Aligned_cols=252 Identities=24% Similarity=0.436 Sum_probs=208.0
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC---ceeEeecCCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCC
Q 008467 273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKT 347 (564)
Q Consensus 273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~---~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~ 347 (564)
.|...|++++|+|+|++|++|+.||.|+||+..+ .....+.+|.++|++++|++. +++|++|+.|++|++||+.+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence 4567899999999999999999999999999853 456788999999999999863 89999999999999999876
Q ss_pred cceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC--CCEEEEEeCCCcEEE
Q 008467 348 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKI 425 (564)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~--~~~las~s~dg~i~i 425 (564)
+.+. .+..+.+|...|++++|+|+ +.+|++|+.|++|++
T Consensus 87 ~~~~---------------------------------------~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~ 127 (297)
T 2pm7_B 87 GRWS---------------------------------------QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSV 127 (297)
T ss_dssp SCBC---------------------------------------CCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred CceE---------------------------------------EEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEE
Confidence 5311 22345679999999999998 899999999999999
Q ss_pred EeCCCCee--eeecccccccEEEEEEccCCCCCC----CCCCcEEEEEEeCCCeEEEEeCCCCe----EEEEEeCCCCCE
Q 008467 426 WNMKQDKY--VHDLREHSKEIYTIRWSPTGSGTN----NPNQQLILASASFDSTVKLWDVELGK----LLYSLNGHREPV 495 (564)
Q Consensus 426 wd~~~~~~--~~~~~~~~~~i~~i~~~p~~~~~~----~~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~h~~~i 495 (564)
||+++... ...+.+|...|.+++|+|.+.... .+....+|++|+.|++|++||+++++ ....+.+|..+|
T Consensus 128 wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V 207 (297)
T 2pm7_B 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 207 (297)
T ss_dssp EEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred EEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCce
Confidence 99987532 356678999999999999742100 00112379999999999999998765 667889999999
Q ss_pred EEEEEcCCC---CEEEEEeCCCcEEEEeCCCCe--E-EEEE---ecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 496 YSLAFSPTG---EYLASGSLDKSMHIWSLKEGK--I-VKTY---TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 496 ~~~~~spdg---~~lasgs~dg~i~iw~~~~~~--~-~~~~---~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
.+++|+|++ .+||+|+.|++|+||++.++. . ...+ .....|++++|+|+|++||+++.|+.|.||+.+
T Consensus 208 ~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 208 RDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 999999995 899999999999999997643 1 1222 124569999999999999999999999999875
No 60
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-37 Score=315.85 Aligned_cols=284 Identities=20% Similarity=0.394 Sum_probs=239.2
Q ss_pred EccCCccce--EEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 211 ILEGHTSEV--CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 211 ~l~~h~~~V--~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
...+|...+ .+++|++ ..+++++.|+.|++|++.++... .... ..+...|++++|+|+++
T Consensus 86 ~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~-------------~~~~---~~~~~~v~~v~~s~~~~ 147 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVS-------------ALAE---TDESTYVASVKWSHDGS 147 (401)
T ss_dssp ECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEE-------------EEEE---CCTTCCEEEEEECTTSS
T ss_pred eCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEe-------------Eeee---cCCCCCEEEEEECCCCC
Confidence 345777664 4466664 56888999999999999775421 1111 12467899999999999
Q ss_pred EEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467 289 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 367 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (564)
+|++|+.||.|++|+.. +.....+.+|...|.+++|+ +++|++|+.|++|++||++...
T Consensus 148 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~------------------ 207 (401)
T 4aez_A 148 FLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIAN------------------ 207 (401)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS------------------
T ss_pred EEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCc------------------
Confidence 99999999999999975 56677888999999999994 5799999999999999987432
Q ss_pred CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEE
Q 008467 368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 447 (564)
Q Consensus 368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i 447 (564)
..+..+.+|.+.|.+++|+|++++|++|+.|+.|++||++++..+..+..|...|.++
T Consensus 208 ----------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~ 265 (401)
T 4aez_A 208 ----------------------HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAV 265 (401)
T ss_dssp ----------------------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEE
T ss_pred ----------------------ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEE
Confidence 2234567899999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCcEEEEEEe--CCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE--eCCCcEEEEeCCC
Q 008467 448 RWSPTGSGTNNPNQQLILASAS--FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG--SLDKSMHIWSLKE 523 (564)
Q Consensus 448 ~~~p~~~~~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasg--s~dg~i~iw~~~~ 523 (564)
+|+|++. .++++|+ .|+.|++||+.+++.+..+. +...|.+++|+|+|++|+++ +.||.|++|++.+
T Consensus 266 ~~~p~~~--------~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 266 AWCPWQS--------NLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp EECTTST--------TEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred EECCCCC--------CEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence 9999764 2677766 89999999999999988886 56789999999999999995 4899999999999
Q ss_pred CeEEEEE--ec-CCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 524 GKIVKTY--TG-NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 524 ~~~~~~~--~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
++..... .+ ...|.+++|+|+|++|++++.||.|.|||+.
T Consensus 337 ~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 337 SGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp TEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred ccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 8766553 33 4579999999999999999999999999985
No 61
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.4e-38 Score=314.62 Aligned_cols=252 Identities=21% Similarity=0.289 Sum_probs=206.6
Q ss_pred EccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEE
Q 008467 211 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 290 (564)
Q Consensus 211 ~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 290 (564)
...+|...|.+++|+|++.+ ++++.||+|+|||+.++...... ......|...|++++|+|+|++|
T Consensus 89 ~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~-------------~~~~~~h~~~V~~v~~spdg~~l 154 (357)
T 4g56_B 89 AGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVN-------------KFAKYEHDDIVKTLSVFSDGTQA 154 (357)
T ss_dssp EEEECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCC-------------CEEECCCSSCEEEEEECSSSSEE
T ss_pred ccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEE-------------eeccCCCCCCEEEEEECCCCCEE
Confidence 34578899999999999865 56789999999999775422100 00112456789999999999999
Q ss_pred EEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC
Q 008467 291 ATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 368 (564)
Q Consensus 291 ~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 368 (564)
++|+.||.|++||.. +.....+.+|...|.+++|+|++. .+++++.|++|++||+++++....+
T Consensus 155 ~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~-------------- 220 (357)
T 4g56_B 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI-------------- 220 (357)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC--------------
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee--------------
Confidence 999999999999976 566778899999999999999885 7899999999999999876533211
Q ss_pred CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEE
Q 008467 369 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 447 (564)
Q Consensus 369 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i 447 (564)
.+..|...+.+++|+|+ +.+|++|+.|+.|++||+++++++..+..|...|+++
T Consensus 221 -------------------------~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l 275 (357)
T 4g56_B 221 -------------------------DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGL 275 (357)
T ss_dssp -------------------------CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEE
T ss_pred -------------------------eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEE
Confidence 23346678999999997 4689999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCC
Q 008467 448 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLKEG 524 (564)
Q Consensus 448 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp-dg~~lasgs~dg~i~iw~~~~~ 524 (564)
+|+|++. .+|++|+.|++|+|||+++++++..+ +|..+|++|+||| |+++||+||.||+|++|++.+.
T Consensus 276 ~~sp~~~--------~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 276 AYSYHSS--------PFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EECSSSS--------CCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEcCCCC--------CEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999864 26899999999999999998877654 7999999999999 8999999999999999999653
No 62
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-39 Score=327.52 Aligned_cols=287 Identities=16% Similarity=0.186 Sum_probs=226.4
Q ss_pred ccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEE
Q 008467 212 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 291 (564)
Q Consensus 212 l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~ 291 (564)
+..|..+|++++|+|++++||+|+.|+.|+||++.++.. ........|...|++++|+|++++|+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~---------------~~~~~~~~h~~~v~~~~~s~~~~~l~ 71 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW---------------KHARTFSDHDKIVTCVDWAPKSNRIV 71 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE---------------EECCCBCCCSSCEEEEEECTTTCCEE
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce---------------EEEEEEecCCceEEEEEEeCCCCEEE
Confidence 444678999999999999999999999999999875410 01112234567899999999999999
Q ss_pred EEeCCCeEEEEECCCc----eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467 292 TGSYDGQARIWSTNGD----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 367 (564)
Q Consensus 292 sg~~dg~i~vw~~~~~----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (564)
+|+.||.|++|+.... ....+..|..+|.+++|+|++++|++++.|++|++||++++...
T Consensus 72 s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---------------- 135 (377)
T 3dwl_C 72 TCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW---------------- 135 (377)
T ss_dssp EEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C----------------
T ss_pred EEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc----------------
Confidence 9999999999997654 35667889999999999999999999999999999998765310
Q ss_pred CCceEEEEeCCCeEEEEEcCCCceeeEecC-CCcceEEEEECCCCCEEEEEeCCCcEEEEeCC-----------------
Q 008467 368 NNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK----------------- 429 (564)
Q Consensus 368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~----------------- 429 (564)
.....+.+ |...|.+++|+|++++|++|+.|++|++||+.
T Consensus 136 ----------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 193 (377)
T 3dwl_C 136 ----------------------WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRL 193 (377)
T ss_dssp ----------------------CCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCC
T ss_pred ----------------------eeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcccccccccc
Confidence 11234555 89999999999999999999999999999985
Q ss_pred -CCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE----EEEEeCCCCCEEEEEEcCCC
Q 008467 430 -QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL----LYSLNGHREPVYSLAFSPTG 504 (564)
Q Consensus 430 -~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~h~~~i~~~~~spdg 504 (564)
.+.++..+ .|...|.+++|+|++. +|++++.||+|++||+.+++. +..+.+|..+|.+++|+|+|
T Consensus 194 ~~~~~~~~~-~~~~~v~~~~~sp~~~---------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 263 (377)
T 3dwl_C 194 PFNTVCAEY-PSGGWVHAVGFSPSGN---------ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES 263 (377)
T ss_dssp CEEEEEECC-CCSSSEEEEEECTTSS---------CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT
T ss_pred chhhhhhcc-cCCceEEEEEECCCCC---------EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC
Confidence 35566667 8999999999999875 689999999999999998876 77889999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCe--E-------------------------E---------EEEe-----------------
Q 008467 505 EYLASGSLDKSMHIWSLKEGK--I-------------------------V---------KTYT----------------- 531 (564)
Q Consensus 505 ~~lasgs~dg~i~iw~~~~~~--~-------------------------~---------~~~~----------------- 531 (564)
++|++|+.++.+ +|+...+. . . ..+.
T Consensus 264 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 342 (377)
T 3dwl_C 264 AIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTV 342 (377)
T ss_dssp EEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSS
T ss_pred CEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCcc
Confidence 999999877766 66654211 0 0 1111
Q ss_pred cCCCEEEEEEccCC-C---EEEEEEcCCcEEEEEe
Q 008467 532 GNGGIFEVCWNKEG-D---KIAACFANHTVCVLDF 562 (564)
Q Consensus 532 ~~~~i~~~~w~~~g-~---~la~~~~~~~v~v~~~ 562 (564)
+...|.+++|.+.+ . .|++|+.||.|+|||+
T Consensus 343 H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 343 HQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp CSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 33568899876543 3 6999999999999986
No 63
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-37 Score=298.89 Aligned_cols=273 Identities=23% Similarity=0.316 Sum_probs=244.1
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc---
Q 008467 273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE--- 348 (564)
Q Consensus 273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~--- 348 (564)
.|...|++++| +++.+|++|+.||.|++|+... .....+..|..+|.+++|+|++++|++++.|+.+++|++...
T Consensus 16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 94 (313)
T 3odt_A 16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGE 94 (313)
T ss_dssp CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTS
T ss_pred CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCC
Confidence 45788999999 9999999999999999999754 456678889999999999999999999999999999998654
Q ss_pred ceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEEEeCCCcEEEEe
Q 008467 349 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWN 427 (564)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las~s~dg~i~iwd 427 (564)
.....+..|...+.++.| +...+++++.|+.|++|+ ...++..+.+|...+.+++|+| +++++++++.||.|++||
T Consensus 95 ~~~~~~~~~~~~i~~~~~-~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d 171 (313)
T 3odt_A 95 DPLYTLIGHQGNVCSLSF-QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ 171 (313)
T ss_dssp CC-CEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred CcccchhhcccCEEEEEe-cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe
Confidence 456667788889999999 566889999999999999 6778888999999999999988 899999999999999999
Q ss_pred CCCCeeeeeccc-ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCE
Q 008467 428 MKQDKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 506 (564)
Q Consensus 428 ~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~ 506 (564)
.......+.. |...+.+++|+|++ .+++++.||.|++||+++++.+..+.+|..+|++++|+|+| .
T Consensus 172 --~~~~~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 238 (313)
T 3odt_A 172 --NDKVIKTFSGIHNDVVRHLAVVDDG----------HFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-D 238 (313)
T ss_dssp --TTEEEEEECSSCSSCEEEEEEEETT----------EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-C
T ss_pred --cCceEEEEeccCcccEEEEEEcCCC----------eEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-C
Confidence 4555666666 88999999999976 38899999999999999999999999999999999999999 5
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEEecCC-CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 507 LASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 507 lasgs~dg~i~iw~~~~~~~~~~~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
|++|+.||.|++||+.+++++..+..+. .|..++|+|+|+ +++++.|+.|.|||++
T Consensus 239 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 239 IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESC
T ss_pred EEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCC
Confidence 8899999999999999999998887654 799999999998 5568899999999976
No 64
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-38 Score=322.35 Aligned_cols=309 Identities=14% Similarity=0.216 Sum_probs=249.2
Q ss_pred EECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-CCCEEEEEeCCCeEEE
Q 008467 223 AWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLATGSYDGQARI 301 (564)
Q Consensus 223 ~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~l~sg~~dg~i~v 301 (564)
.|+|++..+++++ .|+.. +. .+... ...|...|++++|+| ++.+|++|+.||.|+|
T Consensus 34 ~f~~~~~~~~~~~------~w~~~-g~-------------~~~~~---~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~v 90 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLR-GK-------------LIATL---MENEPNSITSSAVSPGETPYLITGSDQGVIKI 90 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCC-CC-------------EEEEE---CTTTTSCEEEEEEECSSSCEEEEEETTSEEEE
T ss_pred hcCCccccccccc------ccccc-ce-------------EEeee---ccCCCCceEEEEECCCCCCEEEEecCCceEEE
Confidence 4788888877765 37643 21 11122 123567899999999 9999999999999999
Q ss_pred EECCC---c--e--eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC---CcceeEEEeec------------cc
Q 008467 302 WSTNG---D--L--KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK---TEEWKQQFEFH------------SG 359 (564)
Q Consensus 302 w~~~~---~--~--~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~---~~~~~~~~~~~------------~~ 359 (564)
|+... . . ...+ .|.++|.+++|+|++++|++|+.|++|++||+. ++.....+..+ ..
T Consensus 91 wd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 169 (437)
T 3gre_A 91 WNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNE 169 (437)
T ss_dssp EEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCC
T ss_pred eECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCccccc
Confidence 99643 1 1 2222 599999999999999999999999999999994 55544433322 22
Q ss_pred CeEEEE--c-CCCceEEEEeCCCeEEEEEcCCCceeeEecC--CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee
Q 008467 360 PTLDVD--W-RNNVSFATSSTDNMIYVCKIGENRPIKTFAG--HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 434 (564)
Q Consensus 360 ~~~~~~--~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~ 434 (564)
.+.++. + .+...+++++.|+.|++|++...+++..+.+ |.+.|++++|+|++++|++|+.||+|++||+++++++
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 249 (437)
T 3gre_A 170 YAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLI 249 (437)
T ss_dssp CEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE
T ss_pred CceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEE
Confidence 333333 2 2356789999999999999999999999998 8999999999999999999999999999999999998
Q ss_pred eecc-cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC----------------------
Q 008467 435 HDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH---------------------- 491 (564)
Q Consensus 435 ~~~~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h---------------------- 491 (564)
..+. .|...|.+++|+|... ++ ..+|++|+.||+|++||+++++++..+.+|
T Consensus 250 ~~~~~~~~~~v~~~~~~~~~s----~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 324 (437)
T 3gre_A 250 RSWSFGDHAPITHVEVCQFYG----KN-SVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFC 324 (437)
T ss_dssp EEEBCTTCEEEEEEEECTTTC----TT-EEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCC
T ss_pred EEEecCCCCceEEEEeccccC----CC-ccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceec
Confidence 8876 7888999999987532 22 247899999999999999999998887654
Q ss_pred ----CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe------------------------------------
Q 008467 492 ----REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT------------------------------------ 531 (564)
Q Consensus 492 ----~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~------------------------------------ 531 (564)
..+|++++|+ ++++|++|+.||.|++||+.+++....+.
T Consensus 325 ~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (437)
T 3gre_A 325 GIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDS 403 (437)
T ss_dssp CCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC----------
T ss_pred ccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcc
Confidence 4457888998 77999999999999999999988666554
Q ss_pred --cCCCEEEEEEccC--CCEEEEEEcCCcEEEEE
Q 008467 532 --GNGGIFEVCWNKE--GDKIAACFANHTVCVLD 561 (564)
Q Consensus 532 --~~~~i~~~~w~~~--g~~la~~~~~~~v~v~~ 561 (564)
....|++++|+++ +.+|++|+.||.|.||+
T Consensus 404 ~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 404 LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ---CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 3456899999998 77999999999999995
No 65
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-37 Score=307.73 Aligned_cols=251 Identities=27% Similarity=0.505 Sum_probs=197.7
Q ss_pred CCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEE
Q 008467 214 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 293 (564)
Q Consensus 214 ~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg 293 (564)
+|...|.+++|+|++++||+|+.|++|+||++....... ......... ..|...|++++|+|+|++|++|
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~------~~~~~~~~~----~~h~~~V~~v~~sp~g~~las~ 125 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRT------FEMDLLAII----EGHENEVKGVAWSNDGYYLATC 125 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------------CCCEEEEEE----C----CEEEEEECTTSCEEEEE
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcc------ccceeEEEE----cCCCCcEEEEEECCCCCEEEEE
Confidence 399999999999999999999999999999985421100 000111112 2456789999999999999999
Q ss_pred eCCCeEEEEECC-C----ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC
Q 008467 294 SYDGQARIWSTN-G----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 368 (564)
Q Consensus 294 ~~dg~i~vw~~~-~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 368 (564)
+.||.|++|+.. . .....+.+|..+|.+++|+|++.+|++|+.|++|++||+.++..
T Consensus 126 s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~------------------ 187 (330)
T 2hes_X 126 SRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW------------------ 187 (330)
T ss_dssp ETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE------------------
T ss_pred eCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe------------------
Confidence 999999999983 2 24567889999999999999999999999999999999765321
Q ss_pred CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC--CCEEEEEeCCCcEEEEeCCCC--------eeeeecc
Q 008467 369 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQD--------KYVHDLR 438 (564)
Q Consensus 369 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~--~~~las~s~dg~i~iwd~~~~--------~~~~~~~ 438 (564)
.++..+.+|.+.|.+++|+|+ +.+|++|+.|++|++||+... .+...+.
T Consensus 188 ---------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 246 (330)
T 2hes_X 188 ---------------------ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP 246 (330)
T ss_dssp ---------------------EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC
T ss_pred ---------------------eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc
Confidence 234567899999999999998 778999999999999998654 3444555
Q ss_pred c-ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEE-EeCCCC-CEEEEEEcC--CCCEEEEEe
Q 008467 439 E-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYS-LNGHRE-PVYSLAFSP--TGEYLASGS 511 (564)
Q Consensus 439 ~-~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~-~~~h~~-~i~~~~~sp--dg~~lasgs 511 (564)
. |...|++++|++.+ +|++++.||+|+|||..++. .+.. +.+|.. .|++++|+| ++++||+|+
T Consensus 247 ~~h~~~v~~v~~s~~~----------~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s 316 (330)
T 2hes_X 247 DVHKRQVYNVAWGFNG----------LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGG 316 (330)
T ss_dssp SCCSSCEEEEEECTTS----------CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEE
T ss_pred cccccceEEEEEcCCC----------EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEec
Confidence 4 88999999998654 58999999999999998774 3333 357876 899999999 799999999
Q ss_pred CCCcEEEEeCCC
Q 008467 512 LDKSMHIWSLKE 523 (564)
Q Consensus 512 ~dg~i~iw~~~~ 523 (564)
.||+|+||++++
T Consensus 317 ~Dg~v~~W~~~~ 328 (330)
T 2hes_X 317 DDGIVNFWSLEK 328 (330)
T ss_dssp TTSEEEEEEC--
T ss_pred CCCcEEEEEecc
Confidence 999999999864
No 66
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.1e-38 Score=310.30 Aligned_cols=255 Identities=24% Similarity=0.366 Sum_probs=201.3
Q ss_pred eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC--CC
Q 008467 210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EG 287 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g 287 (564)
.++.+|...|++++|+|+|++||||+.|++|+|||+.++.. ..+..+ ..|...|++++|++ ++
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-----------~~~~~l----~gH~~~V~~v~~~~~~~~ 71 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-----------ILIADL----RGHEGPVWQVAWAHPMYG 71 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE-----------EEEEEE----ECCSSCEEEEEECCGGGS
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc-----------EEEEEE----cCCCccEEEEEeCCCCCC
Confidence 45679999999999999999999999999999999865421 111122 24567899999986 48
Q ss_pred CEEEEEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCcceeEEEeecccCeE
Q 008467 288 TLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 362 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 362 (564)
++|++|+.|++|++|+.... ....+.+|..+|.+++|+|+ +.+|++|+.|++|++||++++....
T Consensus 72 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~---------- 141 (316)
T 3bg1_A 72 NILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE---------- 141 (316)
T ss_dssp SCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE----------
T ss_pred CEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc----------
Confidence 99999999999999997642 44567899999999999998 7899999999999999987642100
Q ss_pred EEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC-----------------CCEEEEEeCCCcEEE
Q 008467 363 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-----------------GSLLASCSDDVTAKI 425 (564)
Q Consensus 363 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~-----------------~~~las~s~dg~i~i 425 (564)
....+.+|...|.+++|+|+ +++|++|+.|++|++
T Consensus 142 ----------------------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~l 193 (316)
T 3bg1_A 142 ----------------------------VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKL 193 (316)
T ss_dssp ----------------------------ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCE
T ss_pred ----------------------------eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEE
Confidence 11234567777778888876 478999999999999
Q ss_pred EeCCCC---eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC---e-EEEEEeCCCCCEEEE
Q 008467 426 WNMKQD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG---K-LLYSLNGHREPVYSL 498 (564)
Q Consensus 426 wd~~~~---~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~---~-~~~~~~~h~~~i~~~ 498 (564)
||++.. .++..+.+|...|.+++|+|++.. ...+|++|+.|++|+|||+... . ....+..|..+|+++
T Consensus 194 Wd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~-----~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v 268 (316)
T 3bg1_A 194 WKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGL-----PTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHV 268 (316)
T ss_dssp EEECTTSCEEEEECCBCCSSCEEEEECCCCSSC-----SCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEE
T ss_pred EEeCCCCccceeeecccCCCceEEEEecCCCCC-----CCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEE
Confidence 999754 467788999999999999997621 0127999999999999998762 1 123345688999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCC
Q 008467 499 AFSPTGEYLASGSLDKSMHIWSLK 522 (564)
Q Consensus 499 ~~spdg~~lasgs~dg~i~iw~~~ 522 (564)
+|+|+|++||+|+.||+|+||+..
T Consensus 269 ~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 269 SWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999999999999999999999975
No 67
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=7.5e-38 Score=313.84 Aligned_cols=289 Identities=13% Similarity=0.130 Sum_probs=222.1
Q ss_pred cceEEEEECCCCCEEEEEECCC-------cEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467 217 SEVCACAWSPAGSLLASGSGDS-------TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 289 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D~-------~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 289 (564)
.+|++++|+|++++||+||.|. .|++|++..+...... ....... .....+...|.+++++ +..
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~-----~~~~~~~--~~l~~~~~~v~s~~~~--~~~ 85 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE-----QFHILSE--FALEDNDDSPTAIDAS--KGI 85 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH-----HEEEEEE--EECCTTSCCCCEEEEE--TTE
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee-----eeeeeeE--EEccCCCCceEEEEeC--CCE
Confidence 4799999999999999998754 4999998754321100 0000010 1122344567777764 456
Q ss_pred EEEE-----------eCCCeEEEEECCCc--eeE---e-----ecCCCCCEEEEEeCCCCCEEEE--eeCCCcEEEEECC
Q 008467 290 LATG-----------SYDGQARIWSTNGD--LKC---T-----LSKHKGPIFSLKWNKKGDYLLT--GSCDKTAIVWDVK 346 (564)
Q Consensus 290 l~sg-----------~~dg~i~vw~~~~~--~~~---~-----~~~h~~~V~~l~~~~~~~~l~s--~s~D~~v~iwd~~ 346 (564)
+++| +.|+.+|+|+.... ... . ...+...+.+++|+|+|+++++ ++.|++|+|||+.
T Consensus 86 ~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~ 165 (365)
T 4h5i_A 86 ILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPS 165 (365)
T ss_dssp EEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETT
T ss_pred EEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECC
Confidence 6655 45778999985421 111 1 1234456899999999999764 4578999999999
Q ss_pred CcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceee--EecCCCcceEEEEECCCCCEEEEEeCCC---
Q 008467 347 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIK--TFAGHQGEVNCVKWDPTGSLLASCSDDV--- 421 (564)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~--~~~~h~~~i~~v~~~~~~~~las~s~dg--- 421 (564)
+++.+..+. |...+.++.|.++..+++++.++.+.+|+...+..+. ...+|...|.+++|+|+++++++++.|+
T Consensus 166 ~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~ 244 (365)
T 4h5i_A 166 DLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKG 244 (365)
T ss_dssp TTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCC
T ss_pred CCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcce
Confidence 999888775 5677999999877666555556777777777665543 4567899999999999999999999887
Q ss_pred -cEEEEeCCCCee----eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE-eCCCCCE
Q 008467 422 -TAKIWNMKQDKY----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPV 495 (564)
Q Consensus 422 -~i~iwd~~~~~~----~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i 495 (564)
.+++|++..... ...+..|...|++++|+|++. +||+|+.|++|+|||+++++++.++ .+|..+|
T Consensus 245 ~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~---------~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V 315 (365)
T 4h5i_A 245 IVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE---------LAVLASNDNSIALVKLKDLSMSKIFKQAHSFAI 315 (365)
T ss_dssp EEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC---------EEEEEETTSCEEEEETTTTEEEEEETTSSSSCE
T ss_pred eEEeecccccceecceeeeeecCCCCCeEeEEECCCCC---------ceEEEcCCCEEEEEECCCCcEEEEecCcccCCE
Confidence 688899876543 345678999999999999986 8999999999999999999999885 7899999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 008467 496 YSLAFSPTGEYLASGSLDKSMHIWSLKEG 524 (564)
Q Consensus 496 ~~~~~spdg~~lasgs~dg~i~iw~~~~~ 524 (564)
++|+|||||++||+||.|++|+||++...
T Consensus 316 ~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 316 TEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999999999999999643
No 68
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.7e-37 Score=305.00 Aligned_cols=282 Identities=14% Similarity=0.120 Sum_probs=244.1
Q ss_pred EccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC-E
Q 008467 211 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT-L 289 (564)
Q Consensus 211 ~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~ 289 (564)
+..+|...|++++|+|++++|++|+.|+.|+||++.++... ...... ..+...|++++|+|+++ +
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~----------~~~~~~----~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN----------VDLLQS----LRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE----------EEEEEE----EECSSCEEEEEEEESSSEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc----------ccceee----eecCCceEEEEECCCCCcE
Confidence 45689999999999999999999999999999998764310 011111 13467899999999999 9
Q ss_pred EEEEeCCCeEEEEEC-CCceeEeecC--CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC---------cceeEEEeec
Q 008467 290 LATGSYDGQARIWST-NGDLKCTLSK--HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT---------EEWKQQFEFH 357 (564)
Q Consensus 290 l~sg~~dg~i~vw~~-~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~---------~~~~~~~~~~ 357 (564)
|++|+.||.|++|+. .......+.. |..+|.+++|+| +.+|++++.|+.|++||+++ ++....+. +
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~ 149 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-V 149 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-S
T ss_pred EEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-e
Confidence 999999999999999 8777788888 999999999999 99999999999999999987 66666555 7
Q ss_pred ccCeEEEEcCCCceEEEEeCCCeEEEEEcCC-Cc--eeeEecCCCcceEEEEECC-CCCEEEEEeCCCcEEEEeCCCC--
Q 008467 358 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NR--PIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQD-- 431 (564)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~--~~~~~~~h~~~i~~v~~~~-~~~~las~s~dg~i~iwd~~~~-- 431 (564)
...+.++.|.++. +++++.++.|++|++.. .. .......|...|.+++|+| ++++|++++.||.|++|+++..
T Consensus 150 ~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~ 228 (342)
T 1yfq_A 150 KNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD 228 (342)
T ss_dssp CCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC
T ss_pred CCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCc
Confidence 7788999998777 89999999999999987 43 3345567888999999999 9999999999999999999876
Q ss_pred ----eeeeecccccc---------cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC-CCCEEE
Q 008467 432 ----KYVHDLREHSK---------EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-REPVYS 497 (564)
Q Consensus 432 ----~~~~~~~~~~~---------~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~i~~ 497 (564)
.....+..|.. .|.+++|+|++. +|++++.||.|++||+.+++.+..+.+| ..+|++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~---------~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~ 299 (342)
T 1yfq_A 229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK---------FLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVK 299 (342)
T ss_dssp STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC---------CEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEE
T ss_pred ccccccceeeecccccccccccceeEEEEEEcCCCC---------EEEEecCCceEEEEcCccHhHhhhhhcccCCCceE
Confidence 66777777755 999999999875 6899999999999999999999999998 999999
Q ss_pred EEEcCCCCEEEEEeCCCc-EEEEe
Q 008467 498 LAFSPTGEYLASGSLDKS-MHIWS 520 (564)
Q Consensus 498 ~~~spdg~~lasgs~dg~-i~iw~ 520 (564)
++ |+|++|++|+.||. .+.|.
T Consensus 300 ~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 300 IA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EE--ECSSEEEEEEECTHHHHCSS
T ss_pred ec--CCCCeEEEEecCCccccccc
Confidence 99 99999999999998 55554
No 69
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.5e-36 Score=337.40 Aligned_cols=324 Identities=20% Similarity=0.279 Sum_probs=271.5
Q ss_pred ceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467 208 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 287 (564)
Q Consensus 208 ~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 287 (564)
.+..+.+|...|.+++|+|++++|++|+.||.|++|++.++... ... ..+...|++++|+|++
T Consensus 47 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~-------------~~~----~~~~~~v~~~~~s~~~ 109 (814)
T 3mkq_A 47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV-------------VDF----EAHPDYIRSIAVHPTK 109 (814)
T ss_dssp EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE-------------EEE----ECCSSCEEEEEECSSS
T ss_pred eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE-------------EEE----ecCCCCEEEEEEeCCC
Confidence 34567789999999999999999999999999999999865421 111 2346789999999999
Q ss_pred CEEEEEeCCCeEEEEECCC--ceeEeecCCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCcceeEEEeecc-cCeEE
Q 008467 288 TLLATGSYDGQARIWSTNG--DLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-GPTLD 363 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~~--~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~ 363 (564)
.+|++|+.||.|++|+... .....+.+|..+|.+++|+| ++..|++++.|++|++||+.++.....+..+. ..+..
T Consensus 110 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~ 189 (814)
T 3mkq_A 110 PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189 (814)
T ss_dssp SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCE
T ss_pred CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEE
Confidence 9999999999999999764 45667889999999999999 88899999999999999998887777666554 67777
Q ss_pred EEcC---CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc
Q 008467 364 VDWR---NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 440 (564)
Q Consensus 364 ~~~~---~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~ 440 (564)
+.|. +...+++++.|+.|++|++..+.++..+.+|.+.|.+++|+|++++|++|+.||.|++||+.+++.+..+..|
T Consensus 190 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 269 (814)
T 3mkq_A 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (814)
T ss_dssp EEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence 8886 4567889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC----------eEEEE-----------------------
Q 008467 441 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG----------KLLYS----------------------- 487 (564)
Q Consensus 441 ~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~----------~~~~~----------------------- 487 (564)
...+.+++|+|++.. .+++++ .++.+.+|++..+ +.+..
T Consensus 270 ~~~v~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (814)
T 3mkq_A 270 LERSWCIATHPTGRK-------NYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQ 341 (814)
T ss_dssp SSSEEEEEECTTCGG-------GEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCS
T ss_pred CCcEEEEEEccCCCc-------eEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeeccccccccc
Confidence 999999999998741 235554 4677888887543 22221
Q ss_pred ----------EeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcE
Q 008467 488 ----------LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTV 557 (564)
Q Consensus 488 ----------~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v 557 (564)
+..+...+.+++|+|+|++|++++ |+.+.+|++....... .+.+.+++|+|+|++||++..++.|
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~----~~~i~~~~~spdg~~la~~~~~g~v 416 (814)
T 3mkq_A 342 DEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKA----FGKCQDFVWGPDSNSYALIDETGQI 416 (814)
T ss_dssp SSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE----EEECSEEEECTTSSCEEEECTTCCE
T ss_pred CccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccC----CCceEEEEEeCCCCeEEEEeCCCcE
Confidence 122444678999999999999998 8999999987654433 2346789999999999999999999
Q ss_pred EEEE
Q 008467 558 CVLD 561 (564)
Q Consensus 558 ~v~~ 561 (564)
.+|+
T Consensus 417 ~l~~ 420 (814)
T 3mkq_A 417 KYYK 420 (814)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9885
No 70
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=5.8e-37 Score=304.13 Aligned_cols=303 Identities=19% Similarity=0.302 Sum_probs=223.2
Q ss_pred eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC--CC
Q 008467 210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EG 287 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g 287 (564)
.++.+|...|++++|+|++++||+|+.||.|++|++.++... ....... ..+...|++++|+| ++
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~---------~~~~~~~----~~~~~~v~~~~~~~~~d~ 71 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN---------WELSDSW----RAHDSSIVAIDWASPEYG 71 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC---------EEEEEEE----ECCSSCEEEEEECCGGGC
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc---------ceeccee----ccCCCcEEEEEEcCCCCC
Confidence 567899999999999999999999999999999998754311 0111111 23567899999999 69
Q ss_pred CEEEEEeCCCeEEEEECCC----------ceeEeecCCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCcceeEEEe
Q 008467 288 TLLATGSYDGQARIWSTNG----------DLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFE 355 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~~----------~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 355 (564)
.+|++|+.||.|++|+... .....+..|..+|.+++|+|+ +.+|++++.|++|++||+++++....+.
T Consensus 72 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 151 (351)
T 3f3f_A 72 RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWT 151 (351)
T ss_dssp SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCE
T ss_pred CEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccc
Confidence 9999999999999999764 346678899999999999999 9999999999999999998877554433
Q ss_pred -------------ecccCeEEEEcCC----CceEEEEeCCCeEEEEEcCCCce--eeEecCCCcceEEEEECCCC----C
Q 008467 356 -------------FHSGPTLDVDWRN----NVSFATSSTDNMIYVCKIGENRP--IKTFAGHQGEVNCVKWDPTG----S 412 (564)
Q Consensus 356 -------------~~~~~~~~~~~~~----~~~~~~~~~d~~i~~~~~~~~~~--~~~~~~h~~~i~~v~~~~~~----~ 412 (564)
.+...+..+.|.+ ...+++++.++.+.+|....... +..+.+|...|++++|+|++ +
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~ 231 (351)
T 3f3f_A 152 LTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQ 231 (351)
T ss_dssp EEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSE
T ss_pred ccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcce
Confidence 3445677888865 56788999999998887776654 77888999999999999998 8
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC
Q 008467 413 LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR 492 (564)
Q Consensus 413 ~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~ 492 (564)
+|++|+.||.|++||++.+........+........+.+...... .....+.....+.+|+....+.+..+.+|.
T Consensus 232 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 306 (351)
T 3f3f_A 232 LIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDA-----QGRSDSNTEEKAELQSNLQVELLSEHDDHN 306 (351)
T ss_dssp EEEEEETTSCEEEEEEEECC--------------------------------------------CCSEEEEEEEEECTTS
T ss_pred EEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccc-----ccccccccceeeeecccccccEEEEEeccc
Confidence 999999999999999987654433332222222222222211000 012233445567777777778889999999
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 008467 493 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 530 (564)
Q Consensus 493 ~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~ 530 (564)
.+|++++|+|+|++|++|+.||.|+||++.+++.+..+
T Consensus 307 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 307 GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 99999999999999999999999999999988655443
No 71
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-38 Score=319.70 Aligned_cols=279 Identities=19% Similarity=0.359 Sum_probs=245.0
Q ss_pred CeEEEEECCCCC-EEEEE----------eCCCeEEEEECCCce---eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEE
Q 008467 277 DVTTLDWNGEGT-LLATG----------SYDGQARIWSTNGDL---KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIV 342 (564)
Q Consensus 277 ~V~~l~~s~~g~-~l~sg----------~~dg~i~vw~~~~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~i 342 (564)
.|.+++|+|+|. +|++| +.||.|++|+..... ......|..+|.+++|+|++.+|++|+.|+.|++
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v 93 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL 93 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence 478899999997 99999 889999999986532 2223368999999999999999999999999999
Q ss_pred EECCC----cceeEEEeecccCeEEEEcCC--CceEEEEeCCCeEEEEEcCCCc------ee---eEecCCCcceEEEEE
Q 008467 343 WDVKT----EEWKQQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENR------PI---KTFAGHQGEVNCVKW 407 (564)
Q Consensus 343 wd~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~------~~---~~~~~h~~~i~~v~~ 407 (564)
||+.+ ......+..|...+.++.|.+ ...+++++.|+.|++|++.... .. ..+.+|...|.+++|
T Consensus 94 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 173 (416)
T 2pm9_A 94 YSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW 173 (416)
T ss_dssp ECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEE
T ss_pred eecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEe
Confidence 99987 446777888999999999975 4678999999999999998765 22 234689999999999
Q ss_pred CCC-CCEEEEEeCCCcEEEEeCCCCeeeeecccc------cccEEEEEEccCCCCCCCCCCcEEEEEEeCCC---eEEEE
Q 008467 408 DPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREH------SKEIYTIRWSPTGSGTNNPNQQLILASASFDS---TVKLW 477 (564)
Q Consensus 408 ~~~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~------~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg---~i~iw 477 (564)
+|+ +.+|++++.|+.|++||+++++.+..+..| ...|.+++|+|++. .+|++++.|+ .|++|
T Consensus 174 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~l~~~~~d~~~~~i~~~ 245 (416)
T 2pm9_A 174 NQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS--------TRVATATGSDNDPSILIW 245 (416)
T ss_dssp CSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCT--------TEEEEEECCSSSCCCCEE
T ss_pred CCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCC--------CEEEEEECCCCCceEEEE
Confidence 999 789999999999999999999998888776 78899999999863 2789999999 99999
Q ss_pred eCCCC-eEEEEEe-CCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccCC-CEEEEEE
Q 008467 478 DVELG-KLLYSLN-GHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEG-DKIAACF 552 (564)
Q Consensus 478 d~~~~-~~~~~~~-~h~~~i~~~~~sp-dg~~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g-~~la~~~ 552 (564)
|++++ ..+..+. +|..+|++++|+| ++++|++|+.||.|++||+++++.+..+..+ ..|.+++|+|+| ++|++++
T Consensus 246 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~ 325 (416)
T 2pm9_A 246 DLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS 325 (416)
T ss_dssp ETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECC
T ss_pred eCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEe
Confidence 99986 5667777 8999999999999 9999999999999999999999999988764 568999999999 8999999
Q ss_pred cCCcEEEEEee
Q 008467 553 ANHTVCVLDFR 563 (564)
Q Consensus 553 ~~~~v~v~~~~ 563 (564)
.|+.|.|||++
T Consensus 326 ~d~~i~iw~~~ 336 (416)
T 2pm9_A 326 FDNKIEVQTLQ 336 (416)
T ss_dssp SSSEEEEEESC
T ss_pred cCCcEEEEEcc
Confidence 99999999985
No 72
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.9e-36 Score=305.77 Aligned_cols=249 Identities=26% Similarity=0.424 Sum_probs=207.3
Q ss_pred CccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 008467 215 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 294 (564)
Q Consensus 215 h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~ 294 (564)
+...|.+++|+|+|++||+|+.|++|+|||+.++.. .... ..|...|++++|+|++.+|++|+
T Consensus 122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~-------------~~~~----~~h~~~v~~~~~~p~~~~l~s~s 184 (393)
T 1erj_A 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI-------------VMIL----QGHEQDIYSLDYFPSGDKLVSGS 184 (393)
T ss_dssp CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-------------EEEE----CCCSSCEEEEEECTTSSEEEEEE
T ss_pred CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-------------EEEE----ccCCCCEEEEEEcCCCCEEEEec
Confidence 344699999999999999999999999999876431 1111 23567899999999999999999
Q ss_pred CCCeEEEEECCCceeEeecCCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEE
Q 008467 295 YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 373 (564)
Q Consensus 295 ~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (564)
.||.|++||...........+...|.+++|+| ++.+|++|+.|++|++||++++.....+..
T Consensus 185 ~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~----------------- 247 (393)
T 1erj_A 185 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS----------------- 247 (393)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------------------
T ss_pred CCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecc-----------------
Confidence 99999999986543333334677899999999 899999999999999999988765543321
Q ss_pred EEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC------------eeeeeccccc
Q 008467 374 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD------------KYVHDLREHS 441 (564)
Q Consensus 374 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~------------~~~~~~~~~~ 441 (564)
......+|...|.+++|+|++++|++|+.|++|++||+++. .+...+.+|.
T Consensus 248 -----------------~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~ 310 (393)
T 1erj_A 248 -----------------ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 310 (393)
T ss_dssp ----------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCS
T ss_pred -----------------cccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEeccc
Confidence 11223579999999999999999999999999999998753 3455677899
Q ss_pred ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcC------CCCEEEEEeCCCc
Q 008467 442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP------TGEYLASGSLDKS 515 (564)
Q Consensus 442 ~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp------dg~~lasgs~dg~ 515 (564)
..|.+++|+|++. +|++|+.|++|++||+.+++.+..+.+|...|.+++|+| ++++||+|+.||+
T Consensus 311 ~~v~~~~~~~~~~---------~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~ 381 (393)
T 1erj_A 311 DFVLSVATTQNDE---------YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK 381 (393)
T ss_dssp SCEEEEEECGGGC---------EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred CcEEEEEECCCCC---------EEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCc
Confidence 9999999999875 799999999999999999999999999999999999986 6899999999999
Q ss_pred EEEEeCCC
Q 008467 516 MHIWSLKE 523 (564)
Q Consensus 516 i~iw~~~~ 523 (564)
|+||++..
T Consensus 382 i~iW~~~~ 389 (393)
T 1erj_A 382 ARIWKYKK 389 (393)
T ss_dssp EEEEEEEE
T ss_pred EEECcccc
Confidence 99999764
No 73
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-37 Score=317.41 Aligned_cols=289 Identities=18% Similarity=0.232 Sum_probs=236.5
Q ss_pred CceeEc-cCCccceEEEEECC-CCCEEEEEECCCcEEEEeCCC---CCCCCCCCCCCceEEEEEeeccccccCCCCeEEE
Q 008467 207 SDVTIL-EGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIAD---GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL 281 (564)
Q Consensus 207 ~~~~~l-~~h~~~V~~~~~sp-~~~~lasgs~D~~i~iW~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 281 (564)
..+..+ .+|.+.|++++|+| ++++||+|+.||+|+||++.+ +.... . ... ..+...|+++
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-----~--~~~--------~~h~~~v~~~ 117 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS-----S--SLT--------YDCSSTVTQI 117 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS-----C--SEE--------EECSSCEEEE
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc-----e--eee--------ccCCCCEEEE
Confidence 344556 89999999999999 999999999999999999865 22100 0 001 1246789999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEC----CCceeEeec----------C--CCCCEEEEE--eCCCCCEEEEeeCCCcEEEE
Q 008467 282 DWNGEGTLLATGSYDGQARIWST----NGDLKCTLS----------K--HKGPIFSLK--WNKKGDYLLTGSCDKTAIVW 343 (564)
Q Consensus 282 ~~s~~g~~l~sg~~dg~i~vw~~----~~~~~~~~~----------~--h~~~V~~l~--~~~~~~~l~s~s~D~~v~iw 343 (564)
+|+|++.+|++|+.||.|++|+. .+.....+. . +...+.++. +++++.+|++|+.|++|++|
T Consensus 118 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 197 (437)
T 3gre_A 118 TMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIF 197 (437)
T ss_dssp EECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred EEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 99999999999999999999987 343332222 1 556677776 66889999999999999999
Q ss_pred ECCCcceeEEEee--cccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEec-CCCcceEEEEECC----CCCEEE
Q 008467 344 DVKTEEWKQQFEF--HSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDP----TGSLLA 415 (564)
Q Consensus 344 d~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~v~~~~----~~~~la 415 (564)
|+++++....+.. |...+.++.|.++ ..+++++.|+.|++|++...+++..+. +|...|.+++|+| ++.+|+
T Consensus 198 d~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~ 277 (437)
T 3gre_A 198 DIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVV 277 (437)
T ss_dssp ETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEE
T ss_pred eCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEE
Confidence 9999999998887 7889999999754 567889999999999999999988886 8888999996664 677999
Q ss_pred EEeCCCcEEEEeCCCCeeeeeccccc--------------------------ccEEEEEEccCCCCCCCCCCcEEEEEEe
Q 008467 416 SCSDDVTAKIWNMKQDKYVHDLREHS--------------------------KEIYTIRWSPTGSGTNNPNQQLILASAS 469 (564)
Q Consensus 416 s~s~dg~i~iwd~~~~~~~~~~~~~~--------------------------~~i~~i~~~p~~~~~~~~~~~~~l~s~s 469 (564)
+|+.||+|++||+++++++..+..|. ..|.+++|+ ++ .+|++|+
T Consensus 278 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~---------~~l~s~~ 347 (437)
T 3gre_A 278 GGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND---------KILLTDE 347 (437)
T ss_dssp EESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT---------EEEEEEG
T ss_pred EEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc---------eEEEecC
Confidence 99999999999999998887776554 345555665 22 3799999
Q ss_pred CCCeEEEEeCCCCeEEEEEeC-------------------------------------CCCCEEEEEEcCC--CCEEEEE
Q 008467 470 FDSTVKLWDVELGKLLYSLNG-------------------------------------HREPVYSLAFSPT--GEYLASG 510 (564)
Q Consensus 470 ~dg~i~iwd~~~~~~~~~~~~-------------------------------------h~~~i~~~~~spd--g~~lasg 510 (564)
.||.|++||+.+++++..+.+ |...|++++|+++ +.+|++|
T Consensus 348 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~ 427 (437)
T 3gre_A 348 ATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVAC 427 (437)
T ss_dssp GGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEE
T ss_pred CCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEE
Confidence 999999999998876666654 8899999999998 7899999
Q ss_pred eCCCcEEEEe
Q 008467 511 SLDKSMHIWS 520 (564)
Q Consensus 511 s~dg~i~iw~ 520 (564)
+.||.|+||+
T Consensus 428 ~~dG~I~iw~ 437 (437)
T 3gre_A 428 DNSGLIGIFQ 437 (437)
T ss_dssp ETTSCEEEEC
T ss_pred cCCceEEEeC
Confidence 9999999995
No 74
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.8e-35 Score=302.76 Aligned_cols=275 Identities=24% Similarity=0.481 Sum_probs=239.8
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEe--ecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE
Q 008467 277 DVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCT--LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 353 (564)
Q Consensus 277 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~--~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 353 (564)
....|+||++ ++|++|. |++|+|||.. +..... +.+|...|++|+|+|+|++|++|+.|++|++||+.+++.+..
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 4678999976 5777765 9999999976 444443 457888999999999999999999999999999999999999
Q ss_pred EeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCC-ceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467 354 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 432 (564)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~ 432 (564)
+..|...+.++.|.+ ..+++++.|+.+++|+.... ..+..+.+|...+.++.|+|+++++++++.|+.+++|+..+++
T Consensus 185 ~~~h~~~v~~~s~~~-~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~ 263 (420)
T 4gga_A 185 MTSHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 263 (420)
T ss_dssp ECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCS
T ss_pred EeCCCCceEEEeeCC-CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccc
Confidence 999999999988854 57889999999999998764 4567889999999999999999999999999999999997664
Q ss_pred ----eeeecccccccEEEEEEccCCCCCCCCCCcEEEEE--EeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCE
Q 008467 433 ----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS--ASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 506 (564)
Q Consensus 433 ----~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~ 506 (564)
.+.....|...|.+++|+|.+.. ++++ |+.|++|++||+.+++++..+..| ..+.++.|+|+++.
T Consensus 264 ~~~~~~~~~~~~~~~V~~~~~~p~~~~--------~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~ 334 (420)
T 4gga_A 264 GGWVPLQTFTQHQGAVKAVAWCPWQSN--------VLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKE 334 (420)
T ss_dssp SCSCCSEEECCCSSCEEEEEECTTCTT--------EEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTE
T ss_pred ccceeeeeecccCCceeeeeeCCCccc--------EEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCe
Confidence 34566788999999999997642 4444 568999999999999999888865 57899999999999
Q ss_pred EEEEe--CCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 507 LASGS--LDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 507 lasgs--~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
|++++ .|+.|+|||+.+++++.++.++ +.|++++|+|+|++||+|+.|++|+|||+.
T Consensus 335 lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 335 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp EEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred EEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 98765 7899999999999999999875 569999999999999999999999999974
No 75
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.7e-36 Score=302.68 Aligned_cols=280 Identities=15% Similarity=0.250 Sum_probs=235.7
Q ss_pred CCCCeEEEEECCCCCE-EEEEeC---CCeEEEEECCCc-ee-EeecCCCCCEEEEEeCCC---CCEEEEeeCCCcEEEEE
Q 008467 274 KSKDVTTLDWNGEGTL-LATGSY---DGQARIWSTNGD-LK-CTLSKHKGPIFSLKWNKK---GDYLLTGSCDKTAIVWD 344 (564)
Q Consensus 274 ~~~~V~~l~~s~~g~~-l~sg~~---dg~i~vw~~~~~-~~-~~~~~h~~~V~~l~~~~~---~~~l~s~s~D~~v~iwd 344 (564)
|...|++++|+|++.. +++|+. ||.|++|+.... .. .....|..+|.+++|+|+ +.+|++|+.|+.|++||
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 96 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWN 96 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEEC
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEe
Confidence 5678999999999965 456665 999999997654 32 223479999999999999 69999999999999999
Q ss_pred CCCcc-eeEEEeecccCeEEEEcC-------CCceEEEEeCCCeEEEEEcCCCc-eeeEecCCCc----ceEEEE----E
Q 008467 345 VKTEE-WKQQFEFHSGPTLDVDWR-------NNVSFATSSTDNMIYVCKIGENR-PIKTFAGHQG----EVNCVK----W 407 (564)
Q Consensus 345 ~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~~h~~----~i~~v~----~ 407 (564)
+.++. ....+..|...+.++.|. +...+++++.|+.|++|++.... ++..+..|.+ .+.+++ |
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (357)
T 3i2n_A 97 LEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAY 176 (357)
T ss_dssp TTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCC
T ss_pred CCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEecc
Confidence 99887 788888899999999663 34578999999999999999876 7888876655 788888 7
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEcc---CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE
Q 008467 408 DPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP---TGSGTNNPNQQLILASASFDSTVKLWDVELGKL 484 (564)
Q Consensus 408 ~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p---~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 484 (564)
+|++++|++++.||.|++||+++++... ...|...|.+++|+| ++. +|++++.||.|++||+++++.
T Consensus 177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~---------~l~~~~~dg~i~i~d~~~~~~ 246 (357)
T 3i2n_A 177 NQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMN---------KLVATSLEGKFHVFDMRTQHP 246 (357)
T ss_dssp C-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCC---------EEEEEESTTEEEEEEEEEEET
T ss_pred CCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCC---------EEEEECCCCeEEEEeCcCCCc
Confidence 8999999999999999999999988754 366889999999999 553 788999999999999987654
Q ss_pred EEE-----EeCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCC-------------------eEEEEEec-CCCEEE
Q 008467 485 LYS-----LNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSLKEG-------------------KIVKTYTG-NGGIFE 538 (564)
Q Consensus 485 ~~~-----~~~h~~~i~~~~~spdg~-~lasgs~dg~i~iw~~~~~-------------------~~~~~~~~-~~~i~~ 538 (564)
+.. +.+|..+|++++|+|+++ +|++|+.||.|++|+++++ +.+..+.. ...|.+
T Consensus 247 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~ 326 (357)
T 3i2n_A 247 TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISS 326 (357)
T ss_dssp TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEE
T ss_pred ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeE
Confidence 333 348999999999999998 8999999999999999754 34555554 456999
Q ss_pred EEEccCCCEEE-EEEcCCcEEEEEee
Q 008467 539 VCWNKEGDKIA-ACFANHTVCVLDFR 563 (564)
Q Consensus 539 ~~w~~~g~~la-~~~~~~~v~v~~~~ 563 (564)
++|+|+|+.|+ +|+.|+.|.|||+.
T Consensus 327 ~~~s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 327 LDWSPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp EEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred EEEcCCCCeEEEEecCCCcEEEEECC
Confidence 99999999998 79999999999986
No 76
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4e-37 Score=302.40 Aligned_cols=252 Identities=25% Similarity=0.420 Sum_probs=205.9
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEeCC--CCCEEEEeeCCCcEEEEECCC
Q 008467 273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKT 347 (564)
Q Consensus 273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~ 347 (564)
.|...|++++|+|+|++|++|+.|+.|+||+.... ....+.+|.++|++++|++ ++++|++|+.|++|++||+++
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN 90 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence 46788999999999999999999999999997542 3567889999999999986 489999999999999999876
Q ss_pred cceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC--CCEEEEEeCCCcEEE
Q 008467 348 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKI 425 (564)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~--~~~las~s~dg~i~i 425 (564)
+.+. ++..+.+|...|++++|+|+ +.+|++|+.|++|++
T Consensus 91 ~~~~---------------------------------------~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~l 131 (316)
T 3bg1_A 91 GTWE---------------------------------------KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL 131 (316)
T ss_dssp SCCC---------------------------------------EEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEE
T ss_pred Ccce---------------------------------------EEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEE
Confidence 5321 23356789999999999998 789999999999999
Q ss_pred EeCCCCee---eeecccccccEEEEEEccCCCCC--------CCCCCcEEEEEEeCCCeEEEEeCCCC---eEEEEEeCC
Q 008467 426 WNMKQDKY---VHDLREHSKEIYTIRWSPTGSGT--------NNPNQQLILASASFDSTVKLWDVELG---KLLYSLNGH 491 (564)
Q Consensus 426 wd~~~~~~---~~~~~~~~~~i~~i~~~p~~~~~--------~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h 491 (564)
||++.... ...+..|...+.++.|+|+.... ..+....+|++|+.|++|++||++.+ +++..+.+|
T Consensus 132 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h 211 (316)
T 3bg1_A 132 LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH 211 (316)
T ss_dssp EEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC
T ss_pred EecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC
Confidence 99987532 35567899999999999974210 01111236899999999999999755 467788999
Q ss_pred CCCEEEEEEcCCC----CEEEEEeCCCcEEEEeCCCC---e-EEEEE-ecCCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 492 REPVYSLAFSPTG----EYLASGSLDKSMHIWSLKEG---K-IVKTY-TGNGGIFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 492 ~~~i~~~~~spdg----~~lasgs~dg~i~iw~~~~~---~-~~~~~-~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
..+|.+++|+|++ ++||+|+.||+|+||++.++ . ....+ .....|++++|+|+|++||+|+.|+.|+||+.
T Consensus 212 ~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 212 SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence 9999999999997 89999999999999998762 1 11122 23567999999999999999999999999986
Q ss_pred e
Q 008467 563 R 563 (564)
Q Consensus 563 ~ 563 (564)
.
T Consensus 292 ~ 292 (316)
T 3bg1_A 292 S 292 (316)
T ss_dssp C
T ss_pred C
Confidence 4
No 77
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.3e-36 Score=301.48 Aligned_cols=291 Identities=18% Similarity=0.311 Sum_probs=237.5
Q ss_pred cCCceeEccCCccceEEEEECCC---CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEE
Q 008467 205 PNSDVTILEGHTSEVCACAWSPA---GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL 281 (564)
Q Consensus 205 ~~~~~~~l~~h~~~V~~~~~sp~---~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 281 (564)
|...+.++.+|...|++++|+|+ |++|++|+.||.|+||++.+... . ..... ..+...|+++
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------~--~~~~~----~~h~~~v~~~ 92 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------T--IPKAQ----QMHTGPVLDV 92 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------E--EEEEE----EECSSCEEEE
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------e--eEEEe----ccccCCEEEE
Confidence 44456788999999999999999 69999999999999999875211 0 10111 2346789999
Q ss_pred EECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEe--CCCCCEEEEeeCCCcEEEEECCCcceeEEEeeccc
Q 008467 282 DWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKW--NKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 359 (564)
Q Consensus 282 ~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~--~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 359 (564)
+|+|++++|++|+.||.|++|+........+..|..+|.+++| +|++.+|++++.|++|++||+++++....+..+.
T Consensus 93 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~- 171 (368)
T 3mmy_A 93 CWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE- 171 (368)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-
T ss_pred EECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-
Confidence 9999999999999999999999887666667889999999999 9999999999999999999999998888777654
Q ss_pred CeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeE-e-cCCCcceEEEEECCCCCE----EEEEeCCCcEEEEeCCCC--
Q 008467 360 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT-F-AGHQGEVNCVKWDPTGSL----LASCSDDVTAKIWNMKQD-- 431 (564)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~-~-~~h~~~i~~v~~~~~~~~----las~s~dg~i~iwd~~~~-- 431 (564)
.+..+.+... .+++++.++.+.+|++........ + ..+...+.++++.++... +++|+.||.|++|+++..
T Consensus 172 ~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~ 250 (368)
T 3mmy_A 172 RCYCADVIYP-MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP 250 (368)
T ss_dssp CEEEEEEETT-EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH
T ss_pred CceEEEecCC-eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc
Confidence 5556666554 566777889999999976543222 1 123345566666555544 999999999999999887
Q ss_pred -eeeeecccccc------------cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEE
Q 008467 432 -KYVHDLREHSK------------EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSL 498 (564)
Q Consensus 432 -~~~~~~~~~~~------------~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~ 498 (564)
..+..+..|.. .|.+++|+|++. +|++|+.||.|++||+.+++++..+.+|..+|.++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~---------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 321 (368)
T 3mmy_A 251 AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG---------TLATVGSDGRFSFWDKDARTKLKTSEQLDQPISAC 321 (368)
T ss_dssp HHHSEEEECSEEC----CCCEEECCEEEEEECTTTC---------CEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEE
T ss_pred cccceeeeeeecccccccccccccceEEEEEecCCC---------EEEEEccCCeEEEEECCCCcEEEEecCCCCCceEE
Confidence 45666777765 799999999875 68999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeC
Q 008467 499 AFSPTGEYLASGSLDKSMHIWSL 521 (564)
Q Consensus 499 ~~spdg~~lasgs~dg~i~iw~~ 521 (564)
+|+|+|++||+|+.|+..+.|++
T Consensus 322 ~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 322 CFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp EECTTSSCEEEEECCCSTTCGGG
T ss_pred EECCCCCeEEEEecccccccccc
Confidence 99999999999999876555554
No 78
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-36 Score=306.80 Aligned_cols=277 Identities=21% Similarity=0.363 Sum_probs=245.9
Q ss_pred CCCeEEEEECCCCC-EEEEEeCCCeEEEEEC----CCce-------eEeecC----------CCCCEEEEEeCCCCCEEE
Q 008467 275 SKDVTTLDWNGEGT-LLATGSYDGQARIWST----NGDL-------KCTLSK----------HKGPIFSLKWNKKGDYLL 332 (564)
Q Consensus 275 ~~~V~~l~~s~~g~-~l~sg~~dg~i~vw~~----~~~~-------~~~~~~----------h~~~V~~l~~~~~~~~l~ 332 (564)
...|++++|+|+|+ +|++|+.||.|++|+. .... ...+.. |.++|++++|+|++++|+
T Consensus 45 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 124 (425)
T 1r5m_A 45 LDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIV 124 (425)
T ss_dssp CSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEE
T ss_pred cCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEE
Confidence 46799999999999 9999999999999998 5332 333333 688999999999999999
Q ss_pred EeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEecCCCcc----------
Q 008467 333 TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGE---------- 401 (564)
Q Consensus 333 s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~---------- 401 (564)
+|+.|+.|++|| .++.....+..|...+.++.|.++ ..+++++.|+.|++|++..++.+..+..|...
T Consensus 125 ~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (425)
T 1r5m_A 125 TGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHS 203 (425)
T ss_dssp EEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-------------
T ss_pred EEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeecccc
Confidence 999999999999 677788888889999999999754 56889999999999999999999888888776
Q ss_pred -----eEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEE
Q 008467 402 -----VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL 476 (564)
Q Consensus 402 -----i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~i 476 (564)
+.+++|+|++ .+++++.||.|++||+.+++.+..+..|...|.+++|+|++. +|++++.||.|++
T Consensus 204 ~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~l~~~~~d~~i~i 273 (425)
T 1r5m_A 204 GDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK---------LLLSASDDGTLRI 273 (425)
T ss_dssp --CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT---------EEEEEETTSCEEE
T ss_pred CCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC---------EEEEEcCCCEEEE
Confidence 9999999875 578899999999999999998888999999999999999875 7899999999999
Q ss_pred EeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCCEEEEEEccCCCEEEEEEcCC
Q 008467 477 WDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANH 555 (564)
Q Consensus 477 wd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~g~~la~~~~~~ 555 (564)
||+++++.+..+.+|..+|.+++|+|++ +|++++.||.|++||+++++.+..+.. ...+..++|+|+|++|++++.|+
T Consensus 274 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 352 (425)
T 1r5m_A 274 WHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDG 352 (425)
T ss_dssp ECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTS
T ss_pred EECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCC
Confidence 9999999888999999999999999999 999999999999999999999988876 45799999999999999999999
Q ss_pred cEEEEEee
Q 008467 556 TVCVLDFR 563 (564)
Q Consensus 556 ~v~v~~~~ 563 (564)
.|.|||++
T Consensus 353 ~i~i~~~~ 360 (425)
T 1r5m_A 353 QVNVYDLK 360 (425)
T ss_dssp CEEEEECH
T ss_pred eEEEEECC
Confidence 99999985
No 79
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=5.6e-35 Score=299.11 Aligned_cols=284 Identities=25% Similarity=0.473 Sum_probs=233.2
Q ss_pred eEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCe
Q 008467 219 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ 298 (564)
Q Consensus 219 V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~ 298 (564)
.+.++||++ ++||+|. |++|+|||+.++... ..+. ...+...|++++|+|+|++|++|+.||.
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~-------------~~~~--~~~~~~~V~sv~fspdg~~lasgs~Dg~ 170 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL-------------QLLQ--MEQPGEYISSVAWIKEGNYLAVGTSSAE 170 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE-------------EEEE--CCSTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE-------------EEEE--ecCCCCcEEEEEECCCCCEEEEEECCCe
Confidence 578999975 5777764 999999999876421 1111 1234567999999999999999999999
Q ss_pred EEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc-ceeEEEeecccCeEEEEcCC-CceEEEE
Q 008467 299 ARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDWRN-NVSFATS 375 (564)
Q Consensus 299 i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 375 (564)
|+||+.. +.....+.+|...|.++.|+ +..|++|+.|+.+++||.... .....+..|...+..+.|.. ...++++
T Consensus 171 v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~ 248 (420)
T 4gga_A 171 VQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 248 (420)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeee
Confidence 9999976 56677889999999998875 579999999999999998764 44567788888888888865 4678899
Q ss_pred eCCCeEEEEEcCCCc----eeeEecCCCcceEEEEECCCCC-EEEE--EeCCCcEEEEeCCCCeeeeecccccccEEEEE
Q 008467 376 STDNMIYVCKIGENR----PIKTFAGHQGEVNCVKWDPTGS-LLAS--CSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 448 (564)
Q Consensus 376 ~~d~~i~~~~~~~~~----~~~~~~~h~~~i~~v~~~~~~~-~las--~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~ 448 (564)
+.|+.+++|+...+. ++..+..|.+.|.+++|+|.+. ++++ |+.|++|++||+.++.++..+..| ..+.++.
T Consensus 249 ~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~ 327 (420)
T 4gga_A 249 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSIL 327 (420)
T ss_dssp ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEE
T ss_pred eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeee
Confidence 999999999987654 4567788999999999999764 5554 457999999999999988887655 5688999
Q ss_pred EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 008467 449 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 528 (564)
Q Consensus 449 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~ 528 (564)
|+|++. .++.++|+.|+.|+|||+.+++++.++.+|..+|++++|||||++|||||.|++|+|||+.+....+
T Consensus 328 ~~~~~~-------~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 328 WSPHYK-------ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 400 (420)
T ss_dssp EETTTT-------EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred ecCCCC-------eEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccc
Confidence 999875 1222334479999999999999999999999999999999999999999999999999997655443
Q ss_pred E
Q 008467 529 T 529 (564)
Q Consensus 529 ~ 529 (564)
.
T Consensus 401 ~ 401 (420)
T 4gga_A 401 R 401 (420)
T ss_dssp -
T ss_pred h
Confidence 3
No 80
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=8e-36 Score=306.83 Aligned_cols=292 Identities=22% Similarity=0.405 Sum_probs=237.6
Q ss_pred ccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEE
Q 008467 212 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 291 (564)
Q Consensus 212 l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~ 291 (564)
..+|...|.+++| ++++|++|+.||.|++||+.++.. .... ..+...|++++| ++++|+
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~-------------~~~~----~~h~~~v~~l~~--~~~~l~ 187 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLEC-------------KRIL----TGHTGSVLCLQY--DERVII 187 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCE-------------EEEE----CCCSSCEEEEEC--CSSEEE
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeE-------------EEEE----cCCCCcEEEEEE--CCCEEE
Confidence 4567788998877 799999999999999999876532 1111 235678999999 789999
Q ss_pred EEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCccee---EEEeecccCeEEEEcC
Q 008467 292 TGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK---QQFEFHSGPTLDVDWR 367 (564)
Q Consensus 292 sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~ 367 (564)
+|+.||.|++|+.. +.....+.+|..+|.+++|++ .++++|+.|++|++||+.++... ..+..|...+..+.|
T Consensus 188 sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 188 TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF- 264 (435)
T ss_dssp EEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred EEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence 99999999999975 567778899999999999974 59999999999999999887655 556778888999998
Q ss_pred CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEE
Q 008467 368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 447 (564)
Q Consensus 368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i 447 (564)
+...+++++.|+.|++|++.+..++..+.+|...|.+++| +++++++|+.||+|++||+++++++..+.+|...|.++
T Consensus 265 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 342 (435)
T 1p22_A 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 342 (435)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEE
Confidence 6678899999999999999999999999999999999999 47899999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe---------EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 008467 448 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK---------LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHI 518 (564)
Q Consensus 448 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~---------~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~i 518 (564)
.|. +. +|++|+.||.|++||+.++. ++..+.+|..+|++++| ++.+|++|+.||.|++
T Consensus 343 ~~~--~~---------~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~i 409 (435)
T 1p22_A 343 RFD--NK---------RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI 409 (435)
T ss_dssp ECC--SS---------EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEE
T ss_pred Eec--CC---------EEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEE
Confidence 983 22 79999999999999987665 88899999999999999 7889999999999999
Q ss_pred EeCCCCeEEEEEecCCCEEEEEEc
Q 008467 519 WSLKEGKIVKTYTGNGGIFEVCWN 542 (564)
Q Consensus 519 w~~~~~~~~~~~~~~~~i~~~~w~ 542 (564)
||+.+...............++|.
T Consensus 410 wd~~~~~~~~~~~~~~~~~~~~~~ 433 (435)
T 1p22_A 410 WDFLNDPAAQAEPPRSPSRTYTYI 433 (435)
T ss_dssp EC----------------------
T ss_pred EECCCCCCcccCCCCCCccceeee
Confidence 999887655544433444445543
No 81
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=284.59 Aligned_cols=276 Identities=23% Similarity=0.465 Sum_probs=236.2
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEee--cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467 278 VTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTL--SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 354 (564)
Q Consensus 278 V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 354 (564)
..+|+||+++ +|++| .|++|+|||.. ++....+ .+|...|++++|+|++++|++|+.|++|++||+++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 5679999986 67765 59999999975 4555444 578889999999999999999999999999999999999999
Q ss_pred eecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCC-ceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 008467 355 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 433 (564)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~ 433 (564)
..|...+..+.+.+ ..+++++.++.+.+|+.... ..+..+.+|...+.++.+++++++|++++.|++|++||+.+++.
T Consensus 106 ~~h~~~~~~~~~~~-~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 184 (318)
T 4ggc_A 106 TSHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 184 (318)
T ss_dssp ECCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT
T ss_pred cCccceEEEeecCC-CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc
Confidence 99988887777654 46888999999999998765 46678899999999999999999999999999999999987653
Q ss_pred ----eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 008467 434 ----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 509 (564)
Q Consensus 434 ----~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~las 509 (564)
......|...|.++.+.|.+.. -..+++++.+++|++||........... +...+..+.|+|++..+++
T Consensus 185 ~~~~~~~~~~~~~~v~~~~~~~~~~~------~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 185 GWVPLQTFTQHQGAVKAVAWCPWQSN------VLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp BSCCSEEECCCCSCEEEEEECTTSTT------EEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEE
T ss_pred cccceeeecccCCceEEEEecCCCCc------EEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEE
Confidence 3445567888999999987642 2345677889999999999888766655 6678999999999999887
Q ss_pred Ee--CCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 510 GS--LDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 510 gs--~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
++ .|+.|+|||+++++++.++.++ +.|++++|+|+|++||+|+.|++|+|||+.
T Consensus 258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 65 7999999999999999999875 569999999999999999999999999974
No 82
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.6e-35 Score=303.74 Aligned_cols=269 Identities=28% Similarity=0.437 Sum_probs=242.6
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee
Q 008467 278 VTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 356 (564)
Q Consensus 278 V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 356 (564)
++++.+ ++++|++|+.||.|++|+.. +.....+.+|.++|++++|+|++ +|++|+.||+|++||+.+++....+..
T Consensus 125 ~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~ 201 (464)
T 3v7d_B 125 ITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEG 201 (464)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECC
Confidence 566666 56799999999999999965 56777889999999999999988 999999999999999999999999999
Q ss_pred cccCeEEEEcC---CCceEEEEeCCCeEEEEEcCCCce-----------------------eeEecCCCcceEEEEECCC
Q 008467 357 HSGPTLDVDWR---NNVSFATSSTDNMIYVCKIGENRP-----------------------IKTFAGHQGEVNCVKWDPT 410 (564)
Q Consensus 357 ~~~~~~~~~~~---~~~~~~~~~~d~~i~~~~~~~~~~-----------------------~~~~~~h~~~i~~v~~~~~ 410 (564)
|...+.++.|. +...+++++.|+.|++|++..... +..+.+|...|.++ +++
T Consensus 202 h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~ 279 (464)
T 3v7d_B 202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGH 279 (464)
T ss_dssp CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEE
T ss_pred CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCC
Confidence 99999888875 447789999999999999986542 45678899999887 567
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC
Q 008467 411 GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG 490 (564)
Q Consensus 411 ~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 490 (564)
++++++|+.||.|++||+.+++++..+.+|...|++++|+|++. +|++|+.||+|++||+++++++..+.+
T Consensus 280 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~l~sg~~dg~i~vwd~~~~~~~~~~~~ 350 (464)
T 3v7d_B 280 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK---------RCISASMDTTIRIWDLENGELMYTLQG 350 (464)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT---------EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCC---------EEEEEeCCCcEEEEECCCCcEEEEEeC
Confidence 89999999999999999999999999999999999999999875 789999999999999999999999999
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 491 HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 491 h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
|..+|.+++|+ +.+|++|+.||.|++||+.++.....+.....+..++|+++|++|++|+ ++.|.|||++
T Consensus 351 h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~ 420 (464)
T 3v7d_B 351 HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLR 420 (464)
T ss_dssp CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETT
T ss_pred CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECC
Confidence 99999999997 5799999999999999999988877776666788899999999999998 8999999975
No 83
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4.1e-35 Score=301.55 Aligned_cols=268 Identities=29% Similarity=0.537 Sum_probs=241.1
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeE
Q 008467 274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 352 (564)
Q Consensus 274 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~ 352 (564)
+...|++++| ++++|++|+.||.|++|+.. +.....+.+|.++|.+++| ++++|++|+.||+|++||+.+++...
T Consensus 132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~ 207 (435)
T 1p22_A 132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN 207 (435)
T ss_dssp SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE
Confidence 4567888887 78999999999999999975 5667788999999999999 68899999999999999999999999
Q ss_pred EEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCcee---eEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008467 353 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPI---KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 429 (564)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~---~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~ 429 (564)
.+..|...+.++.|.+ ..+++++.|+.|++|++.....+ ..+.+|...|.+++| ++++|++|+.||.|++||++
T Consensus 208 ~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~ 284 (435)
T 1p22_A 208 TLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTS 284 (435)
T ss_dssp EECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT
T ss_pred EEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECC
Confidence 9999999999999975 48899999999999999877655 678899999999999 78999999999999999999
Q ss_pred CCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 008467 430 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 509 (564)
Q Consensus 430 ~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~las 509 (564)
+++.+..+..|...|.++.|.+. ++++|+.||+|++||+++++++..+.+|..+|.+++| ++.+|++
T Consensus 285 ~~~~~~~~~~~~~~v~~~~~~~~-----------~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s 351 (435)
T 1p22_A 285 TCEFVRTLNGHKRGIACLQYRDR-----------LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS 351 (435)
T ss_dssp TCCEEEEEECCSSCEEEEEEETT-----------EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEE
T ss_pred cCcEEEEEcCCCCcEEEEEeCCC-----------EEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEE
Confidence 99999999999999999999532 7899999999999999999999999999999999999 7899999
Q ss_pred EeCCCcEEEEeCCCCe---------EEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 510 GSLDKSMHIWSLKEGK---------IVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 510 gs~dg~i~iw~~~~~~---------~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
|+.||.|++||+.++. .+..+.++ +.|.+++| +|++|++|+.||.|.|||+.
T Consensus 352 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 352 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFL 413 (435)
T ss_dssp EETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--
T ss_pred EeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECC
Confidence 9999999999997665 67777654 56899999 78899999999999999985
No 84
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.7e-36 Score=308.58 Aligned_cols=283 Identities=13% Similarity=0.122 Sum_probs=240.2
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCce-eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee
Q 008467 278 VTTLDWNGEGTLLATGSYDGQARIWSTNGDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 356 (564)
Q Consensus 278 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 356 (564)
+++++|+|+|++|++|+.||.+++|+..... ...+..| ..+....|++++++|++|+.|+.|++||+.++.....+..
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 137 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA 137 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc
Confidence 5578999999999999999999999976432 2233444 4455557899999999999999999999999988888888
Q ss_pred cccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeee
Q 008467 357 HSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 435 (564)
Q Consensus 357 ~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~ 435 (564)
|...+.++.|.++ ..+++++.|+.|++|++...+.+..+.+|.+.|.+++|+|++++|++|+.|++|++||+++++.+.
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 217 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIH 217 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeE
Confidence 9999999999754 578899999999999999999999999999999999999999999999999999999999999888
Q ss_pred eccc---ccccEEEEEEccCCC-------------CCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe-CCCCCEEEE
Q 008467 436 DLRE---HSKEIYTIRWSPTGS-------------GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GHREPVYSL 498 (564)
Q Consensus 436 ~~~~---~~~~i~~i~~~p~~~-------------~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~~ 498 (564)
.+.. |...+.++.|.|.+. ...+|+. .+|++|+.||.|++||+++++.+..+. .|..+|+++
T Consensus 218 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 296 (420)
T 3vl1_A 218 TFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSL 296 (420)
T ss_dssp EECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEE
T ss_pred EeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeE
Confidence 8774 667788888866432 1233444 368899999999999999998877764 578899999
Q ss_pred EEcCCCC-EEEEEeCCCcEEEEeCCCCe-EEEEEec--CCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 499 AFSPTGE-YLASGSLDKSMHIWSLKEGK-IVKTYTG--NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 499 ~~spdg~-~lasgs~dg~i~iw~~~~~~-~~~~~~~--~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
+|+|+++ +|++|+.||.|++||+++++ .+..+.. ...+..+.| ++|++|++++.|+.|.|||++
T Consensus 297 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~ 364 (420)
T 3vl1_A 297 TVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIIS 364 (420)
T ss_dssp EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEEC
T ss_pred EEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEecc
Confidence 9999999 99999999999999999875 3666654 345677755 588999999999999999975
No 85
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-37 Score=313.34 Aligned_cols=298 Identities=12% Similarity=0.136 Sum_probs=237.9
Q ss_pred ccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEe-------------ec---cccccCCCCeE
Q 008467 216 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKH-------------VK---GRTNEKSKDVT 279 (564)
Q Consensus 216 ~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~-------------~~---~~~~~~~~~V~ 279 (564)
...|.+++|||||+++||+|.|++|+ +...+.... .++..+..+.. .. .....+...|+
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~---gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~ 89 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDIN---CNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPR 89 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCS---SBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEE
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccccceec---CCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEE
Confidence 47899999999999999999999999 655444331 11111111100 00 01113357799
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCC-----CEEEEEeCCCCCEEEEeeCCCcEEEEECCCcce----
Q 008467 280 TLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKG-----PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW---- 350 (564)
Q Consensus 280 ~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~-----~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~---- 350 (564)
+++|||+|++||+++.||.|++|+..+ +...+. |.. .|.+++|||+|++|++|+.||+|+|||+.++..
T Consensus 90 ~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~ 167 (588)
T 2j04_A 90 VCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPE 167 (588)
T ss_dssp EEEECSSSSCEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCC
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccccc
Confidence 999999999999999999999999766 555566 666 499999999999999999999999999998753
Q ss_pred ---eEEE----eecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCce---eeEe-cCCCcceEEEEECCCCCEEEEEeC
Q 008467 351 ---KQQF----EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP---IKTF-AGHQGEVNCVKWDPTGSLLASCSD 419 (564)
Q Consensus 351 ---~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~---~~~~-~~h~~~i~~v~~~~~~~~las~s~ 419 (564)
...+ ..|...+.+++|.++. +++++.|+++++|++..+.. .+++ .+|...|.+++|+ ++.||+++
T Consensus 168 ~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~- 243 (588)
T 2j04_A 168 FYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC- 243 (588)
T ss_dssp CEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-
T ss_pred ceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-
Confidence 4555 4455789999999988 99999999999999988763 3456 4888999999999 68999987
Q ss_pred CCcEEEEeCCCCeeeeecccccccEEEEEE--ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEE
Q 008467 420 DVTAKIWNMKQDKYVHDLREHSKEIYTIRW--SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS 497 (564)
Q Consensus 420 dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~--~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~ 497 (564)
+++|++||+.+++......+|...++.+.| +|++. .|++++.||+ ++|... .
T Consensus 244 ~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~---------~La~a~edG~-klw~~d----------------~ 297 (588)
T 2j04_A 244 PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKEST---------ILLMSNKTSY-KVLLED----------------E 297 (588)
T ss_dssp SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCE---------EEEECSSCEE-EEEESS----------------S
T ss_pred CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCC---------EEEEEcCCCC-EEEeec----------------c
Confidence 699999999988874444479999999999 88764 7899999999 999977 2
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEc
Q 008467 498 LAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFA 553 (564)
Q Consensus 498 ~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~ 553 (564)
++|+||+..+|+. |+++++|+...+. ...+.+...|++++|+|||+.+|+++.
T Consensus 298 ~~~spd~~l~a~~--d~~v~lW~~~g~~-l~~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 298 LHVTADNIIAPYL--EKKFKKWSTIWNE-FNNYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp EEEECCCSSHHHH--HHHHHHTTTTTTS-SSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred EEECCCceEEEEc--CCEEEEEECCCCc-eeeeccceEEEEEEECCCCCEEEEEEe
Confidence 6699999998875 9999999986554 334455556899999999999998864
No 86
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-35 Score=296.82 Aligned_cols=255 Identities=25% Similarity=0.404 Sum_probs=211.0
Q ss_pred eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC--
Q 008467 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-- 286 (564)
Q Consensus 209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-- 286 (564)
+.++.+|...|++++|+|++++||+|+.||.|+||++.... ....... ..|...|++++|+++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-----------~~~~~~~----~~h~~~v~~~~~~~~~~ 68 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----------HKLIDTL----TGHEGPVWRVDWAHPKF 68 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-----------EEEEEEE----CCCSSCEEEEEECCGGG
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-----------ceeeeEe----cCCCCcEEEEEeCCCCC
Confidence 35678999999999999999999999999999999986321 0111112 245678999999987
Q ss_pred CCEEEEEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCcceeEEEeecccCe
Q 008467 287 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 361 (564)
Q Consensus 287 g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 361 (564)
+.+|++|+.||.|++|+.... ....+..|..+|.+++|+|+ +.+|++++.|++|++||++++...
T Consensus 69 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---------- 138 (379)
T 3jrp_A 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT---------- 138 (379)
T ss_dssp CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC----------
T ss_pred CCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce----------
Confidence 999999999999999997654 55677889999999999999 999999999999999999765321
Q ss_pred EEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-------------CCCEEEEEeCCCcEEEEeC
Q 008467 362 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-------------TGSLLASCSDDVTAKIWNM 428 (564)
Q Consensus 362 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-------------~~~~las~s~dg~i~iwd~ 428 (564)
....+.+|...|.+++|+| ++.+|++|+.||.|++||+
T Consensus 139 -----------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 189 (379)
T 3jrp_A 139 -----------------------------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 189 (379)
T ss_dssp -----------------------------CEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEE
T ss_pred -----------------------------eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEe
Confidence 1223457888999999999 6999999999999999998
Q ss_pred CCCe----eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-----EEEEEeCCCCCEEEEE
Q 008467 429 KQDK----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-----LLYSLNGHREPVYSLA 499 (564)
Q Consensus 429 ~~~~----~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-----~~~~~~~h~~~i~~~~ 499 (564)
+++. ....+..|...|.+++|+|++.. ..+|++++.||.|++||++++. .+.....|..+|++++
T Consensus 190 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 263 (379)
T 3jrp_A 190 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLL------RSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS 263 (379)
T ss_dssp ETTTTEEEEEEEECCCSSCEEEEEECCCCSS------SEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEE
T ss_pred cCCCcceeeEEEEecccCcEeEEEECCCCCC------CCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEE
Confidence 7654 45677889999999999998310 1379999999999999998763 2222344888999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCC
Q 008467 500 FSPTGEYLASGSLDKSMHIWSLKE 523 (564)
Q Consensus 500 ~spdg~~lasgs~dg~i~iw~~~~ 523 (564)
|+|+|++|++++.||.|++|++..
T Consensus 264 ~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 264 WSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp ECSSSCCEEEEESSSSEEEEEEEE
T ss_pred EcCCCCEEEEecCCCcEEEEeCCC
Confidence 999999999999999999999874
No 87
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-36 Score=314.34 Aligned_cols=293 Identities=12% Similarity=0.089 Sum_probs=218.6
Q ss_pred EccCCccceEEEEECCC------CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEEC
Q 008467 211 ILEGHTSEVCACAWSPA------GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 284 (564)
Q Consensus 211 ~l~~h~~~V~~~~~sp~------~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s 284 (564)
.+.+|.+.|.+++|+|+ +.+||+|+.||+|+||++.++...... .............+...|++++|+
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~------~~~~~~p~~~l~~h~~~v~sv~~s 275 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV------FKMCEKPSLTLSLADSLITTFDFL 275 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE------EECCCSCSEEECCTTTCEEEEEES
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc------ceeecCceEEEEcCCCCEEEEEec
Confidence 45678899999999997 579999999999999999765421100 000000000122456789999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCC--ceeEeecCCCCCEEEE--EeCCCC-CEEEEeeCCCcEEEEECCCcceeEEEeeccc
Q 008467 285 GEGTLLATGSYDGQARIWSTNG--DLKCTLSKHKGPIFSL--KWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 359 (564)
Q Consensus 285 ~~g~~l~sg~~dg~i~vw~~~~--~~~~~~~~h~~~V~~l--~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 359 (564)
++ ..|++|+.||+|++||... .....+.+|..+|.++ .|+|++ .+|+|||.|++|+|||+++++....+..|..
T Consensus 276 ~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~ 354 (524)
T 2j04_B 276 SP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR 354 (524)
T ss_dssp SS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECS
T ss_pred CC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccc
Confidence 86 4899999999999999863 3345688999999999 678888 8999999999999999998887766665543
Q ss_pred --CeEEEEcCC-CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeee
Q 008467 360 --PTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 436 (564)
Q Consensus 360 --~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~ 436 (564)
.+..+.|.+ ...+++++.|++|++|++.....+..+.+|.+.|++++|+|+|++|++|+.||+|++||.... .+..
T Consensus 355 ~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~ 433 (524)
T 2j04_B 355 GSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHG 433 (524)
T ss_dssp CCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTC
T ss_pred cCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccc
Confidence 466788876 457888999999999999998888889999999999999999999999999999999998654 2222
Q ss_pred ccc-----ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-CCeEEEEEeCCCCCEEEEEEcCCC---CEE
Q 008467 437 LRE-----HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYSLAFSPTG---EYL 507 (564)
Q Consensus 437 ~~~-----~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~i~~~~~spdg---~~l 507 (564)
++. +...+++++|+|++. ++ ... +.+++|+.. ++.++..+.+|..+|++|+|+|++ .+|
T Consensus 434 ~~~~~~~~~~~~v~~v~~sp~g~---------~~-~~~--~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~l 501 (524)
T 2j04_B 434 IKNSSATQKSLRLWKWDYSIKDD---------KY-RID--SSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCY 501 (524)
T ss_dssp C------CCCCEEEECBCCSSSC---------EE-EEC--CCCCCCC-------------CCCSCCCEEECCSTTTTTEE
T ss_pred cccCccceeeeEEEEeccCCCCC---------eE-Ecc--CCceecccccCCcceeeecCCCceEEEEECCCCCCccHHH
Confidence 211 112467888888764 22 222 234455443 477788899999999999999996 499
Q ss_pred EEEeCCCcEEEEeCCC
Q 008467 508 ASGSLDKSMHIWSLKE 523 (564)
Q Consensus 508 asgs~dg~i~iw~~~~ 523 (564)
|+|+.||.|+||++..
T Consensus 502 Asg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 502 AFSNSAGLLTLEYLSL 517 (524)
T ss_dssp EEECTTSEEEEEECSC
T ss_pred HhhccCceEEEEEccc
Confidence 9999999999999864
No 88
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.2e-35 Score=292.93 Aligned_cols=269 Identities=14% Similarity=0.192 Sum_probs=236.7
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCce----eEeecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEEC-C
Q 008467 273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL----KCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDV-K 346 (564)
Q Consensus 273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~----~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~-~ 346 (564)
.|...|++++|+|++++|++|+.||.|++|+..... ...+..|..+|.+++|+|+++ +|++|+.|+.|++||+ .
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 88 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc
Confidence 456789999999999999999999999999976433 455668999999999999999 9999999999999999 8
Q ss_pred CcceeEEEee--cccCeEEEEcCCCceEEEEeCCCeEEEEEcCC---------CceeeEecCCCcceEEEEECCCCCEEE
Q 008467 347 TEEWKQQFEF--HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE---------NRPIKTFAGHQGEVNCVKWDPTGSLLA 415 (564)
Q Consensus 347 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~---------~~~~~~~~~h~~~i~~v~~~~~~~~la 415 (564)
++.. ..+.. |...+.++.|.+...+++++.|+.|++|++.. .+++..+. |...|.+++|+|++ ++
T Consensus 89 ~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~ 164 (342)
T 1yfq_A 89 SPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LI 164 (342)
T ss_dssp SSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EE
T ss_pred CCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EE
Confidence 7765 55666 88899999997777889999999999999987 66676666 88999999999987 89
Q ss_pred EEeCCCcEEEEeCCC-Ce--eeeecccccccEEEEEEcc-CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC------eEE
Q 008467 416 SCSDDVTAKIWNMKQ-DK--YVHDLREHSKEIYTIRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVELG------KLL 485 (564)
Q Consensus 416 s~s~dg~i~iwd~~~-~~--~~~~~~~~~~~i~~i~~~p-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~------~~~ 485 (564)
+++.|+.|++||+++ .. .......|...+.+++|+| ++. ++++++.||.|++|+++.. +.+
T Consensus 165 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~---------~l~~~~~dg~i~i~~~~~~~~~~~~~~~ 235 (342)
T 1yfq_A 165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE---------GYACSSIDGRVAVEFFDDQGDDYNSSKR 235 (342)
T ss_dssp EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC---------EEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred EEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC---------EEEEEecCCcEEEEEEcCCCcccccccc
Confidence 999999999999987 44 2334456788999999999 775 7899999999999999876 777
Q ss_pred EEEeCCCC---------CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC--CCEEEEEEccCCCEEEEEEcC
Q 008467 486 YSLNGHRE---------PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN--GGIFEVCWNKEGDKIAACFAN 554 (564)
Q Consensus 486 ~~~~~h~~---------~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~--~~i~~~~w~~~g~~la~~~~~ 554 (564)
..+..|.. +|++++|+|++++|++|+.||.|++||+.+++++..+..+ ..|.+++ |+|++|++|+.|
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~D 313 (342)
T 1yfq_A 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSD 313 (342)
T ss_dssp EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEEC
T ss_pred eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecC
Confidence 88888865 9999999999999999999999999999999999998764 5688999 999999999999
Q ss_pred Cc
Q 008467 555 HT 556 (564)
Q Consensus 555 ~~ 556 (564)
|.
T Consensus 314 g~ 315 (342)
T 1yfq_A 314 DT 315 (342)
T ss_dssp TH
T ss_pred Cc
Confidence 97
No 89
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=6.3e-34 Score=279.24 Aligned_cols=279 Identities=24% Similarity=0.458 Sum_probs=227.6
Q ss_pred eEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCe
Q 008467 219 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ 298 (564)
Q Consensus 219 V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~ 298 (564)
.++++|||++ +||+| .|++|+|||+.+++.. +... ...+...|++++|+|++++|++|+.||.
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~-------------~~~~--~~~~~~~V~~v~~~~~~~~l~sgs~Dg~ 90 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDIL-------------QLLQ--MEQPGEYISSVAWIKEGNYLAVGTSSAE 90 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEE-------------EEEE--CCSTTCCEEEEEECTTSSEEEEEETTSE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEE-------------EEEE--ecCCCCeEEEEEECCCCCEEEEEECCCc
Confidence 4679999986 77766 5999999999876521 1111 1235677999999999999999999999
Q ss_pred EEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc-eeEEEeecccCeEEEEcCC-CceEEEE
Q 008467 299 ARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRN-NVSFATS 375 (564)
Q Consensus 299 i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~ 375 (564)
|++|+.. ++....+.+|...+.++.+ ++..+++++.++.+++|+..+.. ....+..|...+..+.+.. ...++++
T Consensus 91 v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 168 (318)
T 4ggc_A 91 VQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 168 (318)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred EEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEE
Confidence 9999976 5667788899999887655 56799999999999999987654 4456777888888887754 4678899
Q ss_pred eCCCeEEEEEcCCCc----eeeEecCCCcceEEEEECCCCCE---EEEEeCCCcEEEEeCCCCeeeeecccccccEEEEE
Q 008467 376 STDNMIYVCKIGENR----PIKTFAGHQGEVNCVKWDPTGSL---LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 448 (564)
Q Consensus 376 ~~d~~i~~~~~~~~~----~~~~~~~h~~~i~~v~~~~~~~~---las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~ 448 (564)
+.|+.|++|++..++ .......|.+.|.+++++|++.. +++++.+++|++||.......... .+...+..+.
T Consensus 169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~ 247 (318)
T 4ggc_A 169 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSIL 247 (318)
T ss_dssp ETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEE
T ss_pred ecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeeeee
Confidence 999999999998654 34556678889999999998763 346778999999999887766543 4667899999
Q ss_pred EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 008467 449 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 524 (564)
Q Consensus 449 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~ 524 (564)
|+|.+. ..++++|+.|+.|+|||+++++++.++.+|..+|++++|+|||++|||||.||+|+|||+.+.
T Consensus 248 ~~~~~~-------~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 248 WSPHYK-------ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EETTTT-------EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred eccccc-------ceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 999765 233444568999999999999999999999999999999999999999999999999998754
No 90
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3e-34 Score=281.36 Aligned_cols=248 Identities=28% Similarity=0.557 Sum_probs=224.6
Q ss_pred ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCC-ceEEEEeCCCeEEEEE
Q 008467 307 DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCK 385 (564)
Q Consensus 307 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~ 385 (564)
.+...+.+|..+|++++|+|++++|++|+.|+.|++||+.+++....+..|...+.++.|.++ ..+++++.|+.|++|+
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 455678899999999999999999999999999999999999999999999999999999755 5788999999999999
Q ss_pred cCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEE
Q 008467 386 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 465 (564)
Q Consensus 386 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l 465 (564)
+.+.+.+..+.+|...|.+++|+|++++|++|+.|++|++||+++++.+..+..|..+|.++.|+|++. +|
T Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~l 164 (312)
T 4ery_A 94 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LI 164 (312)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS---------EE
T ss_pred CCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCC---------EE
Confidence 999999999999999999999999999999999999999999999999999999999999999999875 78
Q ss_pred EEEeCCCeEEEEeCCCCeEEEEEe-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCC----EEEEE
Q 008467 466 ASASFDSTVKLWDVELGKLLYSLN-GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG----IFEVC 540 (564)
Q Consensus 466 ~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~----i~~~~ 540 (564)
++|+.||.|++||+++++.+..+. .+..++..++|+|++++|++++.||.|++||+.+++.+..+.++.. +....
T Consensus 165 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (312)
T 4ery_A 165 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 244 (312)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEE
T ss_pred EEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEE
Confidence 999999999999999998887764 4567899999999999999999999999999999999988876432 22333
Q ss_pred EccCCCEEEEEEcCCcEEEEEee
Q 008467 541 WNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 541 w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
..+++.+|++|+.|+.|.|||++
T Consensus 245 ~~~~~~~l~sg~~dg~i~vwd~~ 267 (312)
T 4ery_A 245 SVTGGKWIVSGSEDNLVYIWNLQ 267 (312)
T ss_dssp ECSSSCEEEECCTTSCEEEEETT
T ss_pred EeCCCcEEEEECCCCEEEEEECC
Confidence 44678999999999999999975
No 91
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.1e-34 Score=295.00 Aligned_cols=279 Identities=24% Similarity=0.444 Sum_probs=247.5
Q ss_pred ceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467 208 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 287 (564)
Q Consensus 208 ~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 287 (564)
.+..+.+|...|.+++|+ +.+|++|+.||+|++|++.++.. .... ..+...|.+++|+ +
T Consensus 151 ~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~-------------~~~~----~~h~~~v~~~~~~--~ 209 (445)
T 2ovr_B 151 CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGEC-------------IHTL----YGHTSTVRCMHLH--E 209 (445)
T ss_dssp EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEE-------------EEEE----CCCSSCEEEEEEE--T
T ss_pred EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcE-------------EEEE----CCCCCcEEEEEec--C
Confidence 356788999999999998 67999999999999999976531 1111 2356789999995 5
Q ss_pred CEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc
Q 008467 288 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 366 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 366 (564)
..+++|+.||.|++|+.. +.....+.+|..+|.++.| ++.++++|+.|+.|++||+++++....+..|...+.++.|
T Consensus 210 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 287 (445)
T 2ovr_B 210 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF 287 (445)
T ss_dssp TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE
T ss_pred CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE
Confidence 789999999999999975 5667788899999999999 6789999999999999999999999999999999999999
Q ss_pred CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccc---cccc
Q 008467 367 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE---HSKE 443 (564)
Q Consensus 367 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~---~~~~ 443 (564)
+...+++++.|+.|++|++.+++++..+.+|...+.++.++ +++|++|+.||.|++||+++++.+..+.. |...
T Consensus 288 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 364 (445)
T 2ovr_B 288 -DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 364 (445)
T ss_dssp -CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSC
T ss_pred -CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCC
Confidence 67788999999999999999999999999999999998874 67999999999999999999998888876 8889
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE-----eCCCCCEEEEEEcCCCCEEEEEeCCCc---
Q 008467 444 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-----NGHREPVYSLAFSPTGEYLASGSLDKS--- 515 (564)
Q Consensus 444 i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~h~~~i~~~~~spdg~~lasgs~dg~--- 515 (564)
|++++|++. +|++|+.||.|++||+.+++.+..+ .+|..+|++++|+|+|.+||+|+.||+
T Consensus 365 v~~~~~~~~-----------~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~ 433 (445)
T 2ovr_B 365 VTCLQFNKN-----------FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 433 (445)
T ss_dssp EEEEEECSS-----------EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCC
T ss_pred EEEEEECCC-----------EEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCcc
Confidence 999999642 7999999999999999999998888 467889999999999999999999998
Q ss_pred -EEEEeCCC
Q 008467 516 -MHIWSLKE 523 (564)
Q Consensus 516 -i~iw~~~~ 523 (564)
|.|||+..
T Consensus 434 ~l~v~df~~ 442 (445)
T 2ovr_B 434 KLLVLDFDV 442 (445)
T ss_dssp EEEEEECCC
T ss_pred EEEEEECCC
Confidence 99999874
No 92
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.7e-35 Score=292.34 Aligned_cols=276 Identities=14% Similarity=0.174 Sum_probs=216.4
Q ss_pred CCCeEEEEECCCCCEEEEEeCCC-------eEEEEECCCce-----------eEeecCCCCCEEEEEeCCCCCEEEEe--
Q 008467 275 SKDVTTLDWNGEGTLLATGSYDG-------QARIWSTNGDL-----------KCTLSKHKGPIFSLKWNKKGDYLLTG-- 334 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~sg~~dg-------~i~vw~~~~~~-----------~~~~~~h~~~V~~l~~~~~~~~l~s~-- 334 (564)
..+|++++|+|||++|++|+.+. .|++|+..... ...+..|...|.+++++ ++.+++|
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 35799999999999999998643 59999865321 12467888889888765 4566655
Q ss_pred ---------eCCCcEEEEECCCcceeEEE----ee-----cccCeEEEEcCCCce-E--EEEeCCCeEEEEEcCCCceee
Q 008467 335 ---------SCDKTAIVWDVKTEEWKQQF----EF-----HSGPTLDVDWRNNVS-F--ATSSTDNMIYVCKIGENRPIK 393 (564)
Q Consensus 335 ---------s~D~~v~iwd~~~~~~~~~~----~~-----~~~~~~~~~~~~~~~-~--~~~~~d~~i~~~~~~~~~~~~ 393 (564)
+.|+++++|++.+......+ .. +...+..+.|.++.. + ++++.|++|++|++.+.+++.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 45788999998654322111 11 112355677766543 3 345578999999999998888
Q ss_pred EecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeee--ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008467 394 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH--DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 471 (564)
Q Consensus 394 ~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~--~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d 471 (564)
.+. |.+.|.+++|+|+|++|++++.++ +++|+..++..+. ....|...|.+++|+|++. ++++++.|
T Consensus 172 ~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~---------~l~~~s~d 240 (365)
T 4h5i_A 172 EIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIADDT---------VLIAASLK 240 (365)
T ss_dssp EEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE---------EEEEEEES
T ss_pred EeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC---------EEEEEecC
Confidence 875 778899999999999999998665 5666666655543 3456888999999999875 68888888
Q ss_pred C----eEEEEeCCCCeE----EEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE-ec-CCCEEEEEE
Q 008467 472 S----TVKLWDVELGKL----LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY-TG-NGGIFEVCW 541 (564)
Q Consensus 472 g----~i~iwd~~~~~~----~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~-~~-~~~i~~~~w 541 (564)
+ .+++|++..+.. ...+.+|..+|++++|||||++||+|+.|++|+|||+++++++.++ .+ ...|++++|
T Consensus 241 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~f 320 (365)
T 4h5i_A 241 KGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTI 320 (365)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEE
T ss_pred CcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEE
Confidence 7 688999876653 3467889999999999999999999999999999999999999886 44 457999999
Q ss_pred ccCCCEEEEEEcCCcEEEEEee
Q 008467 542 NKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 542 ~~~g~~la~~~~~~~v~v~~~~ 563 (564)
+|||++||+|+.|++|+|||+.
T Consensus 321 Spdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 321 SPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp CTTSCEEEEEETTSEEEEEECC
T ss_pred CCCCCEEEEEeCCCeEEEEEcC
Confidence 9999999999999999999984
No 93
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.6e-34 Score=313.26 Aligned_cols=243 Identities=26% Similarity=0.406 Sum_probs=214.0
Q ss_pred ccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEECCC------ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEE
Q 008467 272 NEKSKDVTTLDWNGEG-TLLATGSYDGQARIWSTNG------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 344 (564)
Q Consensus 272 ~~~~~~V~~l~~s~~g-~~l~sg~~dg~i~vw~~~~------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd 344 (564)
..|...|++++|+|++ .+|+||+.||.|++|+... .....+.+|...|.+++|+|++++|++|+.|++|++||
T Consensus 379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd 458 (694)
T 3dm0_A 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWD 458 (694)
T ss_dssp ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 4578899999999864 7999999999999999753 23457889999999999999999999999999999999
Q ss_pred CCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEE
Q 008467 345 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 424 (564)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~ 424 (564)
+.++.. +..+.+|...|.+++|+|++++|+||+.|++|+
T Consensus 459 ~~~~~~-----------------------------------------~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~ 497 (694)
T 3dm0_A 459 LAAGVS-----------------------------------------TRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 497 (694)
T ss_dssp TTTTEE-----------------------------------------EEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred CCCCcc-----------------------------------------eeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence 977542 345678999999999999999999999999999
Q ss_pred EEeCCCCeeeee---cccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEc
Q 008467 425 IWNMKQDKYVHD---LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS 501 (564)
Q Consensus 425 iwd~~~~~~~~~---~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~s 501 (564)
|||......... ..+|...|.+++|+|++.. .+|++|+.|++|++||++++++...+.+|...|++++|+
T Consensus 498 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-------~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~s 570 (694)
T 3dm0_A 498 LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ-------PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVS 570 (694)
T ss_dssp EECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS-------CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred EEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc-------ceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEe
Confidence 999876543322 2468889999999997631 278999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 502 PTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 502 pdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
|+|++|++|+.||.|++||+.+++.+..+..+..|..++|+|++..|+++.. +.|.|||++
T Consensus 571 pdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~ 631 (694)
T 3dm0_A 571 PDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATE-HGIKIWDLE 631 (694)
T ss_dssp TTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEET-TEEEEEETT
T ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcC-CCEEEEECC
Confidence 9999999999999999999999999888888888999999999999988864 569999975
No 94
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=291.98 Aligned_cols=299 Identities=13% Similarity=0.054 Sum_probs=231.2
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEeCCCCC---CCCCCCCCCc------e-----------EEE-----EE------
Q 008467 217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGT---SNGGAQNGPL------N-----------VLV-----LK------ 265 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~---~~~~~~~~~~------~-----------~~~-----~~------ 265 (564)
.++.+++|+|+|++|+++ .++.|++|++.++. .......... . ... .+
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 568899999999976665 57899999998876 2111000000 0 000 00
Q ss_pred ---------eeccccccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECC---CceeEeec--CCCCCEEEEEeCCCCCE
Q 008467 266 ---------HVKGRTNEKSKDVTTLDWNGEGTLL-ATGSYDGQARIWSTN---GDLKCTLS--KHKGPIFSLKWNKKGDY 330 (564)
Q Consensus 266 ---------~~~~~~~~~~~~V~~l~~s~~g~~l-~sg~~dg~i~vw~~~---~~~~~~~~--~h~~~V~~l~~~~~~~~ 330 (564)
........+...|++++|+|+|++| ++|+.||.|++|+.. +.....+. .|...|.+++|+|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 0000011344579999999999996 899999999999976 44555554 67789999999999999
Q ss_pred EEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC
Q 008467 331 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT 410 (564)
Q Consensus 331 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~ 410 (564)
|++|+.|+.+++|++.++.... .+...+.+|.+.|++++|+|+
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~-------------------------------------~~~~~~~~h~~~v~~~~~sp~ 206 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEK-------------------------------------FTQEPILGHVSMLTDVHLIKD 206 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSS-------------------------------------CCCCCSEECSSCEEEEEEEEC
T ss_pred EEEEeCCCcEEEEecCCccccc-------------------------------------ccceeeecccCceEEEEEcCC
Confidence 9999999999999987654211 023356679999999999999
Q ss_pred ---CCEEEEEeCCCcEEEEeCCCCeeeee-cccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE
Q 008467 411 ---GSLLASCSDDVTAKIWNMKQDKYVHD-LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY 486 (564)
Q Consensus 411 ---~~~las~s~dg~i~iwd~~~~~~~~~-~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 486 (564)
+++|++|+.|++|++||+.++..+.. +.+|...|.+++|+ ++. +|++|+.|++|++||+++++++.
T Consensus 207 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~---------~l~s~~~d~~v~vwd~~~~~~~~ 276 (450)
T 2vdu_B 207 SDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDY---------LLLSAGGDDKIFAWDWKTGKNLS 276 (450)
T ss_dssp TTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STT---------EEEEEESSSEEEEEETTTCCEEE
T ss_pred CCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCC---------EEEEEeCCCeEEEEECCCCcEee
Confidence 99999999999999999999888777 56899999999999 765 79999999999999999999888
Q ss_pred EEeC-------------------------CCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeC--CCC---eEEEEEecCCC
Q 008467 487 SLNG-------------------------HREPVYSLAFSPTGEYLASGS-LDKSMHIWSL--KEG---KIVKTYTGNGG 535 (564)
Q Consensus 487 ~~~~-------------------------h~~~i~~~~~spdg~~lasgs-~dg~i~iw~~--~~~---~~~~~~~~~~~ 535 (564)
.+.. ....|.+++|+|++++|++++ .|+.|+||++ .++ +.+..+..++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~ 356 (450)
T 2vdu_B 277 TFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYN 356 (450)
T ss_dssp EEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSC
T ss_pred eecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCc
Confidence 8763 235799999999999999999 8999999999 665 67777877788
Q ss_pred EEEEEEccCCCEEEEEEc------CCcEEEEEee
Q 008467 536 IFEVCWNKEGDKIAACFA------NHTVCVLDFR 563 (564)
Q Consensus 536 i~~~~w~~~g~~la~~~~------~~~v~v~~~~ 563 (564)
|.+++|+|++-+++++.. +..|.||.++
T Consensus 357 v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 357 VISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred eEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 999999996544444332 3447888764
No 95
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=9.2e-34 Score=288.04 Aligned_cols=281 Identities=16% Similarity=0.293 Sum_probs=232.8
Q ss_pred cCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCce-eEee-------------cCCCCCEEEEEeCC-CCCEEEEeeC
Q 008467 273 EKSKDVTTLDWNG-EGTLLATGSYDGQARIWSTNGDL-KCTL-------------SKHKGPIFSLKWNK-KGDYLLTGSC 336 (564)
Q Consensus 273 ~~~~~V~~l~~s~-~g~~l~sg~~dg~i~vw~~~~~~-~~~~-------------~~h~~~V~~l~~~~-~~~~l~s~s~ 336 (564)
.|...|++++|+| ++++|++|+.||.|++|+..... ...+ .+|..+|.+++|+| ++.+|++++.
T Consensus 41 ~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 120 (408)
T 4a11_B 41 IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF 120 (408)
T ss_dssp CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence 3568899999999 99999999999999999976432 1111 25999999999999 7789999999
Q ss_pred CCcEEEEECCCcceeEEEeecccCeEEEEcCC----CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC
Q 008467 337 DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN----NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS 412 (564)
Q Consensus 337 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~ 412 (564)
|+.|++||+.++.....+. +...+..+.|.. ...+++++.++.|++|++....++..+.+|.+.|.+++|+|+++
T Consensus 121 d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 199 (408)
T 4a11_B 121 DKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYD 199 (408)
T ss_dssp TSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCT
T ss_pred CCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCC
Confidence 9999999999998877766 455666666653 33788999999999999999999999999999999999999998
Q ss_pred -EEEEEeCCCcEEEEeCCCCe-eeeec---------------ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE
Q 008467 413 -LLASCSDDVTAKIWNMKQDK-YVHDL---------------REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK 475 (564)
Q Consensus 413 -~las~s~dg~i~iwd~~~~~-~~~~~---------------~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~ 475 (564)
+|++|+.||.|++||+++.. ++..+ ..|...|.+++|+|++. +|++++.||.|+
T Consensus 200 ~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~l~~~~~dg~i~ 270 (408)
T 4a11_B 200 YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL---------HLLTVGTDNRMR 270 (408)
T ss_dssp TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS---------EEEEEETTSCEE
T ss_pred cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC---------EEEEecCCCeEE
Confidence 58999999999999997664 33333 56889999999999875 789999999999
Q ss_pred EEeCCCCeEEEEEeCCC-----CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEE
Q 008467 476 LWDVELGKLLYSLNGHR-----EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIA 549 (564)
Q Consensus 476 iwd~~~~~~~~~~~~h~-----~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la 549 (564)
+||+.+++....+..+. ..+........+..+++++.|+.|++||+.+++.+..+.++ ..|.+++|+|+|++|+
T Consensus 271 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 350 (408)
T 4a11_B 271 LWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELY 350 (408)
T ss_dssp EEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEE
T ss_pred EEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEE
Confidence 99999887654443221 12222223344566777788999999999999999998854 5799999999999999
Q ss_pred EEEcCCcEEEEEee
Q 008467 550 ACFANHTVCVLDFR 563 (564)
Q Consensus 550 ~~~~~~~v~v~~~~ 563 (564)
+|+.||.|.|||++
T Consensus 351 s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 351 SGSRDCNILAWVPS 364 (408)
T ss_dssp EEETTSCEEEEEEC
T ss_pred EECCCCeEEEEeCC
Confidence 99999999999986
No 96
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.9e-34 Score=285.97 Aligned_cols=241 Identities=20% Similarity=0.385 Sum_probs=213.6
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcce
Q 008467 274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW 350 (564)
Q Consensus 274 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~ 350 (564)
+...|++++|+|++++|++|+.||.|++|+.... ....+.+|..+|.+++|+|++++|++++.|++|++||+.++++
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 86 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 86 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee
Confidence 4578999999999999999999999999998765 6778889999999999999999999999999999999877643
Q ss_pred eEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008467 351 KQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 430 (564)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~ 430 (564)
... ..+.+|...|.+++|+|++++|++|+.|+.|++||+..
T Consensus 87 ~~~---------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 127 (372)
T 1k8k_C 87 KPT---------------------------------------LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ 127 (372)
T ss_dssp EEE---------------------------------------EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEET
T ss_pred eee---------------------------------------EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecC
Confidence 221 22356888999999999999999999999999999987
Q ss_pred Cee----eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC------------------CCCeEEEEE
Q 008467 431 DKY----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV------------------ELGKLLYSL 488 (564)
Q Consensus 431 ~~~----~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~------------------~~~~~~~~~ 488 (564)
... ......|...|.+++|+|++. +|++++.||.|++||+ ..++.+..+
T Consensus 128 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
T 1k8k_C 128 ENDWWVCKHIKKPIRSTVLSLDWHPNSV---------LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES 198 (372)
T ss_dssp TTTEEEEEEECTTCCSCEEEEEECTTSS---------EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred CCcceeeeeeecccCCCeeEEEEcCCCC---------EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec
Confidence 652 233367889999999999875 7899999999999995 467888899
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC-CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 489 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 489 ~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
.+|..+|.+++|+|++++|++++.||.|++||+++++.+..+..+. .|..++|+|+|++|++| .|+.|.||+++
T Consensus 199 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~ 273 (372)
T 1k8k_C 199 SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYD 273 (372)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEE
T ss_pred CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEcc
Confidence 9999999999999999999999999999999999999998887654 79999999999999988 89999999986
No 97
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=8.6e-35 Score=299.09 Aligned_cols=264 Identities=20% Similarity=0.295 Sum_probs=202.6
Q ss_pred eEccCCccceEEEEECC-CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 210 TILEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp-~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
..+.+|.+.|++++|+| ++.+|+||+.||+|+|||+.++.. ..+. ........+.+++|+|++.
T Consensus 158 ~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~-----------~~~~----~~~~~~~~~~~~~~~~~~~ 222 (435)
T 4e54_B 158 IKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL-----------RVFA----SSDTINIWFCSLDVSASSR 222 (435)
T ss_dssp ECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE-----------EEEE----CCSSCSCCCCCEEEETTTT
T ss_pred EEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce-----------eEEe----ccCCCCccEEEEEECCCCC
Confidence 34578999999999999 689999999999999999864321 0111 1112334688999999999
Q ss_pred EEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467 289 LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 367 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (564)
+|++|+.||.|++|+..+.....+.+|..+|.+++|+|++. +|++|+.|++|++||+++.....
T Consensus 223 ~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~--------------- 287 (435)
T 4e54_B 223 MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA--------------- 287 (435)
T ss_dssp EEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS---------------
T ss_pred EEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc---------------
Confidence 99999999999999999888888999999999999999986 67899999999999998754221
Q ss_pred CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccc-----
Q 008467 368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK----- 442 (564)
Q Consensus 368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~----- 442 (564)
.+....+|...|++++|+|+|++|++|+.||+|+|||+.++.....+..|..
T Consensus 288 -----------------------~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 344 (435)
T 4e54_B 288 -----------------------SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQH 344 (435)
T ss_dssp -----------------------CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSS
T ss_pred -----------------------eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccccc
Confidence 1123357899999999999999999999999999999999887776665542
Q ss_pred -cEEEEEEccCCCCC---CCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe-CCCCCEEEE-EEcCCCCEEEEEeCCCcE
Q 008467 443 -EIYTIRWSPTGSGT---NNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GHREPVYSL-AFSPTGEYLASGSLDKSM 516 (564)
Q Consensus 443 -~i~~i~~~p~~~~~---~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~~-~~spdg~~lasgs~dg~i 516 (564)
.+....|+|.+... ..++...+++++..++.|++||+.+++++..+. +|...|.++ +|||+|++||+|+ |+.|
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i 423 (435)
T 4e54_B 345 LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHI 423 (435)
T ss_dssp SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEE
T ss_pred ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcE
Confidence 23345666655310 011111222333345689999999999988874 678888887 6999999999886 7899
Q ss_pred EEEeCCCCeEE
Q 008467 517 HIWSLKEGKIV 527 (564)
Q Consensus 517 ~iw~~~~~~~~ 527 (564)
+||++++|+..
T Consensus 424 ~iW~~~~gk~r 434 (435)
T 4e54_B 424 LIWSQQEARTR 434 (435)
T ss_dssp EECCCC-----
T ss_pred EEEECCcCeee
Confidence 99999988753
No 98
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-34 Score=286.70 Aligned_cols=257 Identities=25% Similarity=0.397 Sum_probs=215.8
Q ss_pred ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC--CcceeEEEeecccCeEEEEcC-C--CceEEEEeCCCeE
Q 008467 307 DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK--TEEWKQQFEFHSGPTLDVDWR-N--NVSFATSSTDNMI 381 (564)
Q Consensus 307 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~d~~i 381 (564)
.+...+.+|.++|++++|+|++++|++|+.|++|++||+. +......+..|..++.++.|. + ...+++++.|+.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 3456788999999999999999999999999999999998 556677788899999999995 3 5788999999999
Q ss_pred EEEEcCCCc--eeeEecCCCcceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCe--eeeecccccccEEEEEEccCCCC
Q 008467 382 YVCKIGENR--PIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQDK--YVHDLREHSKEIYTIRWSPTGSG 455 (564)
Q Consensus 382 ~~~~~~~~~--~~~~~~~h~~~i~~v~~~~~--~~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~i~~i~~~p~~~~ 455 (564)
++|++..++ .+..+.+|...|.+++|+|+ +.+|++++.|+.|++||+.+.. ....+..|...|.+++|+|....
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 999999886 77888899999999999999 9999999999999999998773 34456789999999999995210
Q ss_pred CCC----CCCcEEEEEEeCCCeEEEEeCCCCe----EEEEEeCCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEeCCCC
Q 008467 456 TNN----PNQQLILASASFDSTVKLWDVELGK----LLYSLNGHREPVYSLAFSPT---GEYLASGSLDKSMHIWSLKEG 524 (564)
Q Consensus 456 ~~~----~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~h~~~i~~~~~spd---g~~lasgs~dg~i~iw~~~~~ 524 (564)
... ..+..+|++|+.||.|++||++++. .+..+.+|..+|.+++|+|+ +++|++++.||.|++|++.++
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 000 0011278999999999999998653 55678899999999999999 899999999999999999887
Q ss_pred e---EEEEEe---cCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 525 K---IVKTYT---GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 525 ~---~~~~~~---~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
. ....+. ....|.+++|+|+|++|++++.||.|.||+++
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 4 222222 34579999999999999999999999999986
No 99
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=2.6e-33 Score=279.88 Aligned_cols=272 Identities=15% Similarity=0.226 Sum_probs=216.5
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCccee
Q 008467 273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWK 351 (564)
Q Consensus 273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~ 351 (564)
.+...|++++|+|||++|++|+.+| ++||+........ ..+...+..+.|.++++.+ ++++.|++|++||+.+++.+
T Consensus 17 ~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~ 94 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM-SQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDV 94 (355)
T ss_dssp --CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE-EEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee-eeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEE
Confidence 4567899999999999999998775 7899976533222 2222357778888888887 67888999999999999988
Q ss_pred EEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCC-ceeeEecCCCcceEEEEECCCCCEEEE--EeCCCcEEEEeC
Q 008467 352 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLAS--CSDDVTAKIWNM 428 (564)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~v~~~~~~~~las--~s~dg~i~iwd~ 428 (564)
..+. +..++.++.+..+..+++ .++.|++|++... +.+..+.. ....+++++ .+++. |+.||.|++||+
T Consensus 95 ~~~~-~~~~v~~v~~~~~~~~~~--~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~ 166 (355)
T 3vu4_A 95 SRIK-VDAPVKDLFLSREFIVVS--YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKL 166 (355)
T ss_dssp EEEE-CSSCEEEEEECSSEEEEE--ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEEC
T ss_pred EEEE-CCCceEEEEEcCCEEEEE--EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEEC
Confidence 8876 455788888877654443 4789999999887 66666554 444556666 56665 688999999999
Q ss_pred CCCe----------------eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCe-EEEEeCCCCeEEEEEe-C
Q 008467 429 KQDK----------------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST-VKLWDVELGKLLYSLN-G 490 (564)
Q Consensus 429 ~~~~----------------~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~-~ 490 (564)
.++. .+..+.+|...|.+++|+|++. +|++|+.|++ |+|||+++++++..+. +
T Consensus 167 ~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~---------~l~s~s~d~~~v~iwd~~~~~~~~~~~~g 237 (355)
T 3vu4_A 167 QSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD---------MVATCSQDGTIIRVFKTEDGVLVREFRRG 237 (355)
T ss_dssp CC------------------CCEEECCCSSCEEEEEECTTSS---------EEEEEETTCSEEEEEETTTCCEEEEEECT
T ss_pred CCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC---------EEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence 8765 2677899999999999999875 8999999998 9999999999999998 5
Q ss_pred -CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE--E------------------E--ec--CCCEEEEEEccCC
Q 008467 491 -HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK--T------------------Y--TG--NGGIFEVCWNKEG 545 (564)
Q Consensus 491 -h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~--~------------------~--~~--~~~i~~~~w~~~g 545 (564)
|..+|++++|+|+|++||+|+.|++|+|||++.+...+ . + .. ......++|+++|
T Consensus 238 ~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~ 317 (355)
T 3vu4_A 238 LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISES 317 (355)
T ss_dssp TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSS
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCC
Confidence 99999999999999999999999999999997653211 0 0 00 1123668999999
Q ss_pred CEEEEEEcCCcEEEEEee
Q 008467 546 DKIAACFANHTVCVLDFR 563 (564)
Q Consensus 546 ~~la~~~~~~~v~v~~~~ 563 (564)
+.|++++.||.+.+|+++
T Consensus 318 ~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 318 SLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp EEEEEETTTTEEEEEEEE
T ss_pred CEEEEEeCCCeEEEEEEE
Confidence 999999999999999875
No 100
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=6.5e-34 Score=287.36 Aligned_cols=253 Identities=21% Similarity=0.293 Sum_probs=201.5
Q ss_pred cCCccceEEEEECC-CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEE
Q 008467 213 EGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 291 (564)
Q Consensus 213 ~~h~~~V~~~~~sp-~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~ 291 (564)
.+|...|.+++|+| ++++|++|+.|+.|++||+.+.. . ..... ...+...|++++|+|++++|+
T Consensus 115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------~---~~~~~-~~~~~~~v~~~~~~~~~~~l~ 179 (383)
T 3ei3_B 115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV-----------I---QVFAK-TDSWDYWYCCVDVSVSRQMLA 179 (383)
T ss_dssp CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE-----------E---EEEEC-CCCSSCCEEEEEEETTTTEEE
T ss_pred CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc-----------e---EEEec-cCCCCCCeEEEEECCCCCEEE
Confidence 47999999999999 68999999999999999987421 1 11111 122346799999999999999
Q ss_pred EEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCc
Q 008467 292 TGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 370 (564)
Q Consensus 292 sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (564)
+|+.||.|++|+..+.....+..|...|.+++|+|++. +|++|+.|++|++||+++....
T Consensus 180 ~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------------------- 240 (383)
T 3ei3_B 180 TGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK------------------- 240 (383)
T ss_dssp EEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST-------------------
T ss_pred EECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc-------------------
Confidence 99999999999998888889999999999999999999 8999999999999999864210
Q ss_pred eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeeeeeccccc-------c
Q 008467 371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREHS-------K 442 (564)
Q Consensus 371 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~-------~ 442 (564)
..++..+ +|...|.+++|+| ++++|++++.|+.|++||++++.....+..|. .
T Consensus 241 ------------------~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (383)
T 3ei3_B 241 ------------------NSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLT 301 (383)
T ss_dssp ------------------TCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSC
T ss_pred ------------------cceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccccc
Confidence 1122233 5888999999999 99999999999999999999887766665443 2
Q ss_pred cEEEEEEccCCCC---CCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC--CCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008467 443 EIYTIRWSPTGSG---TNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSPTGEYLASGSLDKSMH 517 (564)
Q Consensus 443 ~i~~i~~~p~~~~---~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~i~~~~~spdg~~lasgs~dg~i~ 517 (564)
.+. +.|+|.+.. ...|+.. + +|+.||.|++||+.+++++..+.+ |...+..++|+|+|++||+|+ ||.|+
T Consensus 302 ~~~-~~~~p~~~~~~~~~s~dg~--~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~ 376 (383)
T 3ei3_B 302 PIK-ATWHPMYDLIVAGRYPDDQ--L-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNIL 376 (383)
T ss_dssp CCC-CEECSSSSEEEEECBCCTT--T-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEE
T ss_pred ceE-EeccCCCCceEEEecCCcc--c-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEE
Confidence 222 344443320 0011111 1 677999999999999999999987 456788889999999999998 99999
Q ss_pred EEeCCC
Q 008467 518 IWSLKE 523 (564)
Q Consensus 518 iw~~~~ 523 (564)
||++++
T Consensus 377 iw~~~~ 382 (383)
T 3ei3_B 377 IWNRED 382 (383)
T ss_dssp EEECC-
T ss_pred EEecCC
Confidence 999874
No 101
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-35 Score=296.49 Aligned_cols=239 Identities=19% Similarity=0.274 Sum_probs=198.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCC---ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCccee
Q 008467 275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 351 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 351 (564)
...|++++|+|+|++|++|+.||.|++|+... .....+.+|..+|.+++|+|++++|++++.|++|++||+.++..
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~- 89 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT- 89 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C-
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc-
Confidence 45799999999999999999999999999865 45567889999999999999999999999999999999876530
Q ss_pred EEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008467 352 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 431 (564)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~ 431 (564)
..+...+.+|...|.+++|+|++++|++|+.|+.|++||++++
T Consensus 90 -------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 132 (377)
T 3dwl_C 90 -------------------------------------WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQE 132 (377)
T ss_dssp -------------------------------------CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC---
T ss_pred -------------------------------------eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCc
Confidence 1123456679999999999999999999999999999999887
Q ss_pred e---eeeeccc-ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC------------------CCeEEEEEe
Q 008467 432 K---YVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE------------------LGKLLYSLN 489 (564)
Q Consensus 432 ~---~~~~~~~-~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~------------------~~~~~~~~~ 489 (564)
. ....+.. |...|.+++|+|++. +|++++.|++|++||+. .++++..+
T Consensus 133 ~~~~~~~~~~~~h~~~v~~~~~~~~~~---------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 202 (377)
T 3dwl_C 133 NDWWVSKHLKRPLRSTILSLDWHPNNV---------LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY- 202 (377)
T ss_dssp --CCCCEEECSSCCSCEEEEEECTTSS---------EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-
T ss_pred ccceeeeEeecccCCCeEEEEEcCCCC---------EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-
Confidence 6 3667777 999999999999875 79999999999999985 35566667
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE----EEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 490 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI----VKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 490 ~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~----~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
+|..+|++++|+|+|++||+|+.||.|++||+.+++. +..+..+ ..|.+++|+|+|++|++|+.++ +.+|+.
T Consensus 203 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-~~~~~~ 279 (377)
T 3dwl_C 203 PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYS-PILLQG 279 (377)
T ss_dssp CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSS-EEEECC
T ss_pred cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCc-EEEEEe
Confidence 8999999999999999999999999999999999876 6666654 4699999999999999997665 557754
No 102
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=8.4e-34 Score=288.60 Aligned_cols=275 Identities=17% Similarity=0.254 Sum_probs=233.2
Q ss_pred eEEEEECCCCCEE-EEEeCCCeEEEEECCCc-----eeEeecCCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCc--
Q 008467 278 VTTLDWNGEGTLL-ATGSYDGQARIWSTNGD-----LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTE-- 348 (564)
Q Consensus 278 V~~l~~s~~g~~l-~sg~~dg~i~vw~~~~~-----~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~-- 348 (564)
...++++|+...+ ++|+.||.|+||+.... ....+.+|.++|++++|+| ++++|++|+.|++|++||+.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 4457888877544 45789999999997532 3345778999999999999 9999999999999999999887
Q ss_pred -----ceeEEEeecccCeEEEEcCCC--ceEEEEeCCCeEEEEEcCCCceeeEe--cCCCcceEEEEECCCCCEEEEEeC
Q 008467 349 -----EWKQQFEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTF--AGHQGEVNCVKWDPTGSLLASCSD 419 (564)
Q Consensus 349 -----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~--~~h~~~i~~v~~~~~~~~las~s~ 419 (564)
.....+..|...+.++.|.++ ..+++++.|+.|++|++..++++..+ .+|.+.|.+++|+|++++|++++.
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 196 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence 556778889999999999876 47899999999999999999999999 899999999999999999999999
Q ss_pred CCcEEEEeCCCCeeeeec-cccccc-EEEEEEccCCCCCCCCCCcEEEEEE---eCCCeEEEEeCCCCeE-EEEE-eCCC
Q 008467 420 DVTAKIWNMKQDKYVHDL-REHSKE-IYTIRWSPTGSGTNNPNQQLILASA---SFDSTVKLWDVELGKL-LYSL-NGHR 492 (564)
Q Consensus 420 dg~i~iwd~~~~~~~~~~-~~~~~~-i~~i~~~p~~~~~~~~~~~~~l~s~---s~dg~i~iwd~~~~~~-~~~~-~~h~ 492 (564)
||.|++||+++++.+..+ ..|... +.++.|+|++. +|++| +.|+.|++||+++++. +... ..|.
T Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 267 (402)
T 2aq5_A 197 DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK---------ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTS 267 (402)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE---------EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCC
T ss_pred CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc---------EEEEeccCCCCceEEEEcCccccCCceEEeccCC
Confidence 999999999999998888 678765 89999999764 78888 7899999999987654 2222 2467
Q ss_pred CCEEEEEEcCCCCEEEE-EeCCCcEEEEeCCCCe----EEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 493 EPVYSLAFSPTGEYLAS-GSLDKSMHIWSLKEGK----IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 493 ~~i~~~~~spdg~~las-gs~dg~i~iw~~~~~~----~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
..|.+++|+|+|++|++ |+.||.|++|++.+++ .+..+.....+.+++|+|+|..+++ .++.+.+|++.
T Consensus 268 ~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~ 341 (402)
T 2aq5_A 268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLH 341 (402)
T ss_dssp SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEE
T ss_pred CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcC
Confidence 78999999999999975 5579999999999887 2344444577999999999998875 56689999874
No 103
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=296.54 Aligned_cols=275 Identities=20% Similarity=0.384 Sum_probs=209.6
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc------------eeEeecCCC------------CCEEEEEeCCCC-
Q 008467 274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD------------LKCTLSKHK------------GPIFSLKWNKKG- 328 (564)
Q Consensus 274 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~------------~~~~~~~h~------------~~V~~l~~~~~~- 328 (564)
+...|++++|+|+|++|++|+.||.|+||+.... ....+.+|. .+|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 3578999999999999999999999999997643 356788998 899999999998
Q ss_pred -CEEEEeeCCCcEEEEECCCcceeEEE-e--ecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEe-cCCCcceE
Q 008467 329 -DYLLTGSCDKTAIVWDVKTEEWKQQF-E--FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF-AGHQGEVN 403 (564)
Q Consensus 329 -~~l~s~s~D~~v~iwd~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-~~h~~~i~ 403 (564)
.+|++++.|++|++||+.++...... . .+.+............+......+ +.. ...+...+ .+|...|.
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~h~~~v~ 181 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMD----LMV-EASPRRIFANAHTYHIN 181 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEE----EEE-EEEEEEEECSCCSSCCC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchh----eee-eccceEEeccCCCcceE
Confidence 79999999999999999775533210 0 000000000000000000000000 000 01233344 68999999
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCC-Ceeee-------ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE
Q 008467 404 CVKWDPTGSLLASCSDDVTAKIWNMKQ-DKYVH-------DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK 475 (564)
Q Consensus 404 ~v~~~~~~~~las~s~dg~i~iwd~~~-~~~~~-------~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~ 475 (564)
+++|+|++++|++| .|++|++||+.+ ...+. .+..|...|++++|+|++. .+|++|+.||+|+
T Consensus 182 ~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--------~~l~s~~~dg~i~ 252 (447)
T 3dw8_B 182 SISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC--------NTFVYSSSKGTIR 252 (447)
T ss_dssp EEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT--------TEEEEEETTSCEE
T ss_pred EEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC--------cEEEEEeCCCeEE
Confidence 99999999999999 899999999984 44443 3678999999999999872 1799999999999
Q ss_pred EEeCCCCeE----EEEEeCCCC------------CEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEEEecCCC---
Q 008467 476 LWDVELGKL----LYSLNGHRE------------PVYSLAFSPTGEYLASGSLDKSMHIWSLKE-GKIVKTYTGNGG--- 535 (564)
Q Consensus 476 iwd~~~~~~----~~~~~~h~~------------~i~~~~~spdg~~lasgs~dg~i~iw~~~~-~~~~~~~~~~~~--- 535 (564)
+||+++++. +..+.+|.. +|.+++|+|+|++|++++. +.|+|||+++ ++.+..+..+..
T Consensus 253 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~ 331 (447)
T 3dw8_B 253 LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRS 331 (447)
T ss_dssp EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTT
T ss_pred EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccc
Confidence 999998886 678888876 8999999999999999999 9999999997 888888876543
Q ss_pred -------------EEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 536 -------------IFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 536 -------------i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
++.++|+|+|++|++|+.||.|.|||++
T Consensus 332 ~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 332 KLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN 372 (447)
T ss_dssp THHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred cccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence 3449999999999999999999999975
No 104
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.9e-33 Score=279.16 Aligned_cols=278 Identities=19% Similarity=0.331 Sum_probs=229.4
Q ss_pred cCCCCeEEEEECCC---CCEEEEEeCCCeEEEEECC--Ccee-EeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC
Q 008467 273 EKSKDVTTLDWNGE---GTLLATGSYDGQARIWSTN--GDLK-CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK 346 (564)
Q Consensus 273 ~~~~~V~~l~~s~~---g~~l~sg~~dg~i~vw~~~--~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~ 346 (564)
.|...|++++|+|+ |++|++|+.||.|++|+.. +... ..+.+|.++|.+++|+|++++|++++.|++|++||+.
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~ 116 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS 116 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcC
Confidence 45688999999999 6999999999999999976 3333 6788999999999999999999999999999999999
Q ss_pred CcceeEEEeecccCeEEEEc--CCC-ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcE
Q 008467 347 TEEWKQQFEFHSGPTLDVDW--RNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 423 (564)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i 423 (564)
++.... +..|...+.++.| ..+ ..+++++.|+.|++|++...+++..+..|. .+.++.+. ...+++++.++.+
T Consensus 117 ~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i 192 (368)
T 3mmy_A 117 SNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPMAVVATAERGL 192 (368)
T ss_dssp TTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTEEEEEEGGGCE
T ss_pred CCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCeeEEEeCCCcE
Confidence 988766 5568889999998 544 568899999999999999999988888775 55566665 4578899999999
Q ss_pred EEEeCCCCeeeeec--ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC---eEEEEEeCCCC-----
Q 008467 424 KIWNMKQDKYVHDL--REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG---KLLYSLNGHRE----- 493 (564)
Q Consensus 424 ~iwd~~~~~~~~~~--~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~----- 493 (564)
++|++......... ..+...+.++.+.+.... ....+++++.||.|++||++.. ..+..+.+|..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (368)
T 3mmy_A 193 IVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN-----KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNT 267 (368)
T ss_dssp EEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS-----CEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----
T ss_pred EEEEeccccchhhhccccccCCCceEEEcccCCC-----CCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccc
Confidence 99999876443221 123344556665554321 1224899999999999999977 55677777776
Q ss_pred -------CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCCEEEEEEccCCCEEEEEEcCCcEEE
Q 008467 494 -------PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCV 559 (564)
Q Consensus 494 -------~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~g~~la~~~~~~~v~v 559 (564)
+|++++|+|+|++|++|+.||.|++||+.+++++..+.. ...|.+++|+|+|++||+|+.|+....
T Consensus 268 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~ 341 (368)
T 3mmy_A 268 SAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKG 341 (368)
T ss_dssp CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTC
T ss_pred cccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccc
Confidence 799999999999999999999999999999999988876 457999999999999999998875433
No 105
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=6.5e-33 Score=274.90 Aligned_cols=248 Identities=19% Similarity=0.362 Sum_probs=215.5
Q ss_pred EeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc----ceeEEEeecccCeEEEEcCC---CceEEEEeCCCeEE
Q 008467 310 CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE----EWKQQFEFHSGPTLDVDWRN---NVSFATSSTDNMIY 382 (564)
Q Consensus 310 ~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~i~ 382 (564)
..+.+|.++|++++|+|++++|++|+.|++|++||+.++ .....+..|..++.++.|.+ ...+++++.|+.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 456799999999999999999999999999999999876 35666778999999999976 67899999999999
Q ss_pred EEEcCCC---------ceeeEecCCCcceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCeeeeecc-------------
Q 008467 383 VCKIGEN---------RPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQDKYVHDLR------------- 438 (564)
Q Consensus 383 ~~~~~~~---------~~~~~~~~h~~~i~~v~~~~~--~~~las~s~dg~i~iwd~~~~~~~~~~~------------- 438 (564)
+|++..+ +++..+.+|.+.|.+++|+|+ +.+|++++.||.|++||+++++.+..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9999876 567888999999999999999 9999999999999999998876544332
Q ss_pred cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEEeCCCCCEEEEEEcCCC----CEEEEEeC
Q 008467 439 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGHREPVYSLAFSPTG----EYLASGSL 512 (564)
Q Consensus 439 ~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~i~~~~~spdg----~~lasgs~ 512 (564)
.|...+.++.|+|.... ..+|++++.|+.+.+|+...++. +..+.+|..+|++++|+|++ ++|++|+.
T Consensus 165 ~~~~~~~~~~~~p~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFS------PEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp SCSCCCEEEEECCCSSS------CCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred CcccceeEEEeccCCCC------CcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC
Confidence 57788999999997211 12789999999999998887765 67788999999999999998 89999999
Q ss_pred CCcEEEEeCCCC----------------------------------------------eEEEEEecC-CCEEEEEEccCC
Q 008467 513 DKSMHIWSLKEG----------------------------------------------KIVKTYTGN-GGIFEVCWNKEG 545 (564)
Q Consensus 513 dg~i~iw~~~~~----------------------------------------------~~~~~~~~~-~~i~~~~w~~~g 545 (564)
||.|++||++++ +.+..+.++ ..|++++|+|+|
T Consensus 239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 318 (351)
T 3f3f_A 239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG 318 (351)
T ss_dssp TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS
T ss_pred CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCC
Confidence 999999999875 455555543 569999999999
Q ss_pred CEEEEEEcCCcEEEEEee
Q 008467 546 DKIAACFANHTVCVLDFR 563 (564)
Q Consensus 546 ~~la~~~~~~~v~v~~~~ 563 (564)
++|++|+.||.|+|||+.
T Consensus 319 ~~l~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 319 TILSSAGDDGKVRLWKAT 336 (351)
T ss_dssp CCEEEEETTSCEEEEEEC
T ss_pred CEEEEecCCCcEEEEecC
Confidence 999999999999999985
No 106
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-34 Score=314.42 Aligned_cols=254 Identities=25% Similarity=0.395 Sum_probs=209.1
Q ss_pred eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC--C
Q 008467 210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE--G 287 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~--g 287 (564)
.++.+|.+.|++++|+|++++|++|+.||+|+||++.++. ...... ...|...|++++|+++ +
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-----------~~~~~~----l~~h~~~V~~l~~s~~~~~ 67 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----------HKLIDT----LTGHEGPVWRVDWAHPKFG 67 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-----------EEEEEE----ECCCSSCEEEEEECCTTSC
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-----------Ccccee----ccCCcCceEEEEecCCCCC
Confidence 5688999999999999999999999999999999986321 011112 2245678999999998 9
Q ss_pred CEEEEEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCcceeEEEeecccCeE
Q 008467 288 TLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 362 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 362 (564)
++|++|+.||.|++|+.... ....+..|..+|++++|+|+ +++|++|+.||+|++||++++...
T Consensus 68 ~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~----------- 136 (753)
T 3jro_A 68 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT----------- 136 (753)
T ss_dssp SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC-----------
T ss_pred CEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc-----------
Confidence 99999999999999997654 55677889999999999999 999999999999999999775321
Q ss_pred EEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-------------CCCEEEEEeCCCcEEEEeCC
Q 008467 363 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-------------TGSLLASCSDDVTAKIWNMK 429 (564)
Q Consensus 363 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-------------~~~~las~s~dg~i~iwd~~ 429 (564)
....+.+|...|.+++|+| ++.+|++|+.||+|++||++
T Consensus 137 ----------------------------~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~ 188 (753)
T 3jro_A 137 ----------------------------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN 188 (753)
T ss_dssp ----------------------------CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEE
T ss_pred ----------------------------ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEecc
Confidence 1234567888999999999 58999999999999999998
Q ss_pred CC----eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-----EEEEEeCCCCCEEEEEE
Q 008467 430 QD----KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-----LLYSLNGHREPVYSLAF 500 (564)
Q Consensus 430 ~~----~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-----~~~~~~~h~~~i~~~~~ 500 (564)
++ .+...+..|...|++++|+|++.. ..+|++|+.||.|++||+.++. .+.....|...|++++|
T Consensus 189 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~------~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~ 262 (753)
T 3jro_A 189 SDAQTYVLESTLEGHSDWVRDVAWSPTVLL------RSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW 262 (753)
T ss_dssp TTTTEEEEEEEECCCSSCEEEEEECCCCSS------SEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEE
T ss_pred CCcccceeeeeecCCCCcEEEEEeccCCCC------CCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEE
Confidence 76 556778899999999999998200 1379999999999999998764 23334568889999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCC
Q 008467 501 SPTGEYLASGSLDKSMHIWSLKE 523 (564)
Q Consensus 501 spdg~~lasgs~dg~i~iw~~~~ 523 (564)
+|+|++|++|+.||.|++|++.+
T Consensus 263 spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 263 SLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp CTTTCCEEEECSSSCEECCBCCS
T ss_pred cCCCCEEEEEcCCCEEEEEecCC
Confidence 99999999999999999999874
No 107
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.8e-33 Score=285.59 Aligned_cols=260 Identities=24% Similarity=0.496 Sum_probs=214.9
Q ss_pred eEccCCccceEEEEECCC-CCEEEEEECCCcEEEEeCCCCCCCCCC--CCCCceEEEEEeeccccccCCCCeEEEEECCC
Q 008467 210 TILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGA--QNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 286 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~-~~~lasgs~D~~i~iW~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 286 (564)
..+.+|.+.|++++|+|+ +.+||+|+.||.|++|++.+....... ...+. .. ...|...|++++|+|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~-----~~----~~~h~~~v~~l~~~~~ 192 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPD-----LR----LRGHQKEGYGLSWNPN 192 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCS-----EE----EECCSSCCCCEEECTT
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCc-----EE----ecCCCCCeEEEEeCCC
Confidence 445689999999999997 789999999999999998753211110 01111 11 1235678999999999
Q ss_pred CC-EEEEEeCCCeEEEEECCCc--------eeEeecCCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCcceeEEEee
Q 008467 287 GT-LLATGSYDGQARIWSTNGD--------LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 356 (564)
Q Consensus 287 g~-~l~sg~~dg~i~vw~~~~~--------~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 356 (564)
+. +|++|+.||.|++|+.... ....+..|...|.+++|+| ++..|++++.|+.|++||++++..
T Consensus 193 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~------ 266 (430)
T 2xyi_A 193 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT------ 266 (430)
T ss_dssp STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS------
T ss_pred CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC------
Confidence 98 9999999999999998641 1345678999999999999 678899999999999999986421
Q ss_pred cccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC-EEEEEeCCCcEEEEeCCC-Ceee
Q 008467 357 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQ-DKYV 434 (564)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~las~s~dg~i~iwd~~~-~~~~ 434 (564)
.+++..+.+|...|++++|+|+++ +|++|+.||+|++||+++ ..++
T Consensus 267 --------------------------------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~ 314 (430)
T 2xyi_A 267 --------------------------------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 314 (430)
T ss_dssp --------------------------------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS
T ss_pred --------------------------------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCe
Confidence 123445667899999999999987 689999999999999987 5667
Q ss_pred eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--------------CeEEEEEeCCCCCEEEEEE
Q 008467 435 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--------------GKLLYSLNGHREPVYSLAF 500 (564)
Q Consensus 435 ~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--------------~~~~~~~~~h~~~i~~~~~ 500 (564)
..+..|...|.+++|+|++. .+|++++.||.|+|||+.. .+.+..+.+|...|++++|
T Consensus 315 ~~~~~h~~~v~~i~~sp~~~--------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 386 (430)
T 2xyi_A 315 HSFESHKDEIFQVQWSPHNE--------TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 386 (430)
T ss_dssp EEEECCSSCEEEEEECSSCT--------TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEE
T ss_pred EEeecCCCCEEEEEECCCCC--------CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEE
Confidence 88889999999999999874 2789999999999999986 3678888899999999999
Q ss_pred cCCCC-EEEEEeCCCcEEEEeCCCC
Q 008467 501 SPTGE-YLASGSLDKSMHIWSLKEG 524 (564)
Q Consensus 501 spdg~-~lasgs~dg~i~iw~~~~~ 524 (564)
+|+++ +|++++.||.|+||++.++
T Consensus 387 ~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 387 NPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999 8999999999999998754
No 108
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-32 Score=271.96 Aligned_cols=240 Identities=21% Similarity=0.350 Sum_probs=213.0
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCccee
Q 008467 273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 351 (564)
Q Consensus 273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 351 (564)
.|...|++++|+|++++|++|+.||.|++|+.. +.....+.+|.++|.+++|+|++++|++++.|++|++||+.+++..
T Consensus 30 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 109 (369)
T 3zwl_B 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV 109 (369)
T ss_dssp CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 456789999999999999999999999999964 5677788999999999999999999999999999999999876543
Q ss_pred EEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCC-----CcEEEE
Q 008467 352 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-----VTAKIW 426 (564)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~d-----g~i~iw 426 (564)
.. +. |...|.+++|+|++++|++++.+ +.|++|
T Consensus 110 ~~-----------------------------------------~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~ 147 (369)
T 3zwl_B 110 AT-----------------------------------------WK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIY 147 (369)
T ss_dssp EE-----------------------------------------EE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEE
T ss_pred EE-----------------------------------------ee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEE
Confidence 32 22 56678999999999999999999 999999
Q ss_pred eCCCCe-----------eeeecccccc--cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEEEEeCCC
Q 008467 427 NMKQDK-----------YVHDLREHSK--EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSLNGHR 492 (564)
Q Consensus 427 d~~~~~-----------~~~~~~~~~~--~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~ 492 (564)
|+.... .+..+..|.. .+.+++|+|++. +|++++.||.|++||+++ ++.+..+..|.
T Consensus 148 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 218 (369)
T 3zwl_B 148 EIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK---------YIIAGHKDGKISKYDVSNNYEYVDSIDLHE 218 (369)
T ss_dssp EEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC---------EEEEEETTSEEEEEETTTTTEEEEEEECCS
T ss_pred EecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC---------EEEEEcCCCEEEEEECCCCcEeEEEEecCC
Confidence 987553 2334445555 899999999875 789999999999999998 78889999999
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCC--------------cEE
Q 008467 493 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANH--------------TVC 558 (564)
Q Consensus 493 ~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~--------------~v~ 558 (564)
.+|.+++|+|++++|++++.||.|++||+++++.+..+.....+..++|+|+|+.+++++.++ .+.
T Consensus 219 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 298 (369)
T 3zwl_B 219 KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEAR 298 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEE
T ss_pred CceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeE
Confidence 999999999999999999999999999999999999999888999999999999999999888 788
Q ss_pred EEEee
Q 008467 559 VLDFR 563 (564)
Q Consensus 559 v~~~~ 563 (564)
+||++
T Consensus 299 ~~d~~ 303 (369)
T 3zwl_B 299 FYHKI 303 (369)
T ss_dssp EEETT
T ss_pred EEecC
Confidence 88764
No 109
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.5e-33 Score=286.74 Aligned_cols=287 Identities=18% Similarity=0.306 Sum_probs=234.8
Q ss_pred ceEEEEECCCCC-EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-CCCEEEEEeC
Q 008467 218 EVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLATGSY 295 (564)
Q Consensus 218 ~V~~~~~sp~~~-~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~l~sg~~ 295 (564)
....|+++|+.. ++++|+.||.|+||++....... ........|...|++++|+| ++++|++|+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~-------------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~ 102 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD-------------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSE 102 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC-------------TTCCCBCCCSSCEEEEEECTTCTTEEEEEET
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC-------------CCCceEecCCCCEEEEEeCCCCCCEEEEEeC
Confidence 345689999865 55678999999999986432110 00011234678899999999 9999999999
Q ss_pred CCeEEEEECCC--------ceeEeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCcceeEEE--eecccCeEEE
Q 008467 296 DGQARIWSTNG--------DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQF--EFHSGPTLDV 364 (564)
Q Consensus 296 dg~i~vw~~~~--------~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~--~~~~~~~~~~ 364 (564)
||.|++|+... .....+.+|..+|.+++|+|++ ++|++++.|++|++||+.+++....+ ..|...+.++
T Consensus 103 dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 182 (402)
T 2aq5_A 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182 (402)
T ss_dssp TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEE
T ss_pred CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEE
Confidence 99999999764 3466788999999999999998 69999999999999999999988888 6788999999
Q ss_pred EcCCC-ceEEEEeCCCeEEEEEcCCCceeeEe-cCCCcc-eEEEEECCCCCEEEEE---eCCCcEEEEeCCCCee-eeec
Q 008467 365 DWRNN-VSFATSSTDNMIYVCKIGENRPIKTF-AGHQGE-VNCVKWDPTGSLLASC---SDDVTAKIWNMKQDKY-VHDL 437 (564)
Q Consensus 365 ~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~-~~h~~~-i~~v~~~~~~~~las~---s~dg~i~iwd~~~~~~-~~~~ 437 (564)
.|.++ ..+++++.|+.|++|++..+..+..+ .+|.+. +.++.|+|++++|++| +.|+.|++||+++... +...
T Consensus 183 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~ 262 (402)
T 2aq5_A 183 DWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ 262 (402)
T ss_dssp EECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE
T ss_pred EECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE
Confidence 99754 57889999999999999999999888 788876 8999999999999999 7999999999988654 2222
Q ss_pred -ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEEeC--CCCCEEEEEEcCCCCEEEEEeCC
Q 008467 438 -REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNG--HREPVYSLAFSPTGEYLASGSLD 513 (564)
Q Consensus 438 -~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~--h~~~i~~~~~spdg~~lasgs~d 513 (564)
..|...+.+++|+|++. .++++|+.||.|++||+.+++. +..+.. |..+|.+++|+|++.++++ .+
T Consensus 263 ~~~~~~~v~~~~~s~~~~--------~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~ 332 (402)
T 2aq5_A 263 ELDTSSGVLLPFFDPDTN--------IVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KC 332 (402)
T ss_dssp ECCCCSSCEEEEEETTTT--------EEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GT
T ss_pred eccCCCceeEEEEcCCCC--------EEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cc
Confidence 24677899999999875 3445677899999999998773 444433 5689999999999999875 56
Q ss_pred CcEEEEeCCCCeEE
Q 008467 514 KSMHIWSLKEGKIV 527 (564)
Q Consensus 514 g~i~iw~~~~~~~~ 527 (564)
+.+++|++.++++.
T Consensus 333 ~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 333 EIARFYKLHERKCE 346 (402)
T ss_dssp EEEEEEEEETTEEE
T ss_pred eeEEEEEcCCCcEE
Confidence 68999999887653
No 110
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-32 Score=280.24 Aligned_cols=247 Identities=25% Similarity=0.480 Sum_probs=205.2
Q ss_pred CCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEE
Q 008467 214 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 293 (564)
Q Consensus 214 ~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg 293 (564)
.|...|.+++|+|++++|++|+.||.|++|++.++.. +... ..+...|.+++| ++.+|++|
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~-------------~~~~----~~~~~~v~~~~~--~~~~l~~~ 192 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK-------------LRTM----AGHQARVGCLSW--NRHVLSSG 192 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-------------EEEE----CCCSSCEEEEEE--ETTEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE-------------EEEe----cCCCCceEEEEE--CCCEEEEE
Confidence 4889999999999999999999999999999876532 1111 235678999999 56799999
Q ss_pred eCCCeEEEEECC--CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCce
Q 008467 294 SYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 371 (564)
Q Consensus 294 ~~dg~i~vw~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (564)
+.||.|++|+.. +.....+.+|.+.|.+++|+|++.+|++|+.|++|++||++++.
T Consensus 193 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~---------------------- 250 (401)
T 4aez_A 193 SRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI---------------------- 250 (401)
T ss_dssp ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS----------------------
T ss_pred cCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC----------------------
Confidence 999999999986 45567788999999999999999999999999999999997643
Q ss_pred EEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCC-CEEEEEe--CCCcEEEEeCCCCeeeeecccccccEEEEE
Q 008467 372 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCS--DDVTAKIWNMKQDKYVHDLREHSKEIYTIR 448 (564)
Q Consensus 372 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~las~s--~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~ 448 (564)
++..+.+|...|.+++|+|++ .++++|+ .|+.|++||+.+++.+..+. +...|.+++
T Consensus 251 -------------------~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~ 310 (401)
T 4aez_A 251 -------------------PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLI 310 (401)
T ss_dssp -------------------EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEE
T ss_pred -------------------ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEE
Confidence 233456788899999999976 5666665 79999999999999888775 667899999
Q ss_pred EccCCCCCCCCCCcEEEEE--EeCCCeEEEEeCCCCeEE--EEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 008467 449 WSPTGSGTNNPNQQLILAS--ASFDSTVKLWDVELGKLL--YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 524 (564)
Q Consensus 449 ~~p~~~~~~~~~~~~~l~s--~s~dg~i~iwd~~~~~~~--~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~ 524 (564)
|+|++. +|++ |+.||.|++||+.+++.. ..+.+|..+|.+++|+|+|++|++|+.||.|++|++.++
T Consensus 311 ~s~~~~---------~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 311 WSPHSK---------EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp ECSSSS---------EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred ECCCCC---------eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 999875 5566 448999999999986554 457799999999999999999999999999999999998
Q ss_pred eEEEEE
Q 008467 525 KIVKTY 530 (564)
Q Consensus 525 ~~~~~~ 530 (564)
+.+...
T Consensus 382 ~~~~~~ 387 (401)
T 4aez_A 382 DHVKRP 387 (401)
T ss_dssp ------
T ss_pred cccccc
Confidence 876553
No 111
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.4e-33 Score=282.30 Aligned_cols=266 Identities=20% Similarity=0.332 Sum_probs=210.3
Q ss_pred CccceEEEEECCC----CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-CCCE
Q 008467 215 HTSEVCACAWSPA----GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTL 289 (564)
Q Consensus 215 h~~~V~~~~~sp~----~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~ 289 (564)
|...|++++|+|+ +.+|++|+.||.|++|++.++.. .... ..+...|++++|+| ++.+
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-------------~~~~----~~~~~~i~~~~~~~~~~~~ 130 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC-------------IKHY----VGHGNAINELKFHPRDPNL 130 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE-------------EEEE----ESCCSCEEEEEECSSCTTE
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE-------------eeee----cCCCCcEEEEEECCCCCCE
Confidence 6688999999999 67999999999999999876532 1111 23567899999999 9999
Q ss_pred EEEEeCCCeEEEEECC-CceeEee---cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEE
Q 008467 290 LATGSYDGQARIWSTN-GDLKCTL---SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 365 (564)
Q Consensus 290 l~sg~~dg~i~vw~~~-~~~~~~~---~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (564)
|++|+.||.|++|+.. +.....+ ..|...|.+++|+|++++|++++.|+.|++||+++++....+.... .
T Consensus 131 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~ 204 (366)
T 3k26_A 131 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY------D 204 (366)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHH------T
T ss_pred EEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeE------E
Confidence 9999999999999986 4455555 6899999999999999999999999999999999876544332110 0
Q ss_pred cCCCce-EEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee-----------
Q 008467 366 WRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY----------- 433 (564)
Q Consensus 366 ~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~----------- 433 (564)
+..+.. +.... . . ..........+|...|.+++|+ +++|++++.|+.|++||+.+...
T Consensus 205 ~~~~~~~~~~~~----~---~-~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 274 (366)
T 3k26_A 205 YNPNKTNRPFIS----Q---K-IHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESN 274 (366)
T ss_dssp CCGGGCSSCCCC----E---E-ECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCC
T ss_pred ecCCCCcccccc----e---e-eccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcc
Confidence 000000 00000 0 0 0011234556799999999998 78999999999999999887643
Q ss_pred ---eeecccccccEEEEEEccC--CCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe----EEEEEeCC--CCCEEEEEEcC
Q 008467 434 ---VHDLREHSKEIYTIRWSPT--GSGTNNPNQQLILASASFDSTVKLWDVELGK----LLYSLNGH--REPVYSLAFSP 502 (564)
Q Consensus 434 ---~~~~~~~~~~i~~i~~~p~--~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~h--~~~i~~~~~sp 502 (564)
+..+..|...|.+++|+|+ +. +|++|+.||.|++||+.+++ ....+.+| ..+|++++|+|
T Consensus 275 ~~~~~~~~~~~~~v~~~~~s~~~~~~---------~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 345 (366)
T 3k26_A 275 VTILGRFDYSQCDIWYMRFSMDFWQK---------MLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR 345 (366)
T ss_dssp EEEEEEEECSSCCSSCCCCEECTTSS---------EEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECT
T ss_pred hheeccccccCCcEEEEEEcCCCCCc---------EEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCC
Confidence 6777788889999999998 54 79999999999999999874 45577777 78999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCC
Q 008467 503 TGEYLASGSLDKSMHIWSLK 522 (564)
Q Consensus 503 dg~~lasgs~dg~i~iw~~~ 522 (564)
+|++|++|+.||.|++||+.
T Consensus 346 ~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 346 DSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TSSEEEEEETTSEEEEEEC-
T ss_pred CCCeEEEEeCCCEEEEEEec
Confidence 99999999999999999985
No 112
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-34 Score=285.02 Aligned_cols=263 Identities=10% Similarity=0.061 Sum_probs=204.4
Q ss_pred EECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 008467 223 AWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW 302 (564)
Q Consensus 223 ~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw 302 (564)
.+.+++.+|++|+.||+|++||+.++.... .+. ...|.++.|+|+ +++|+.|+.|++|
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~----------~~~---------~~~v~~~~~~~~---~~s~s~D~~i~~w 100 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTIT----------TIT---------TPNPRTGGEHPA---IISRGPCNRLLLL 100 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEE----------EEE---------EECCCTTCCCCS---EEEECSTTEEEEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEE----------EEe---------cCCceeeeeCCc---eEEecCCCeEEEE
Confidence 455688999999999999999998764311 111 134677788888 9999999999999
Q ss_pred ECCCce----------eE-eecCCCCCEEEEEeCC--CCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCC
Q 008467 303 STNGDL----------KC-TLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN 369 (564)
Q Consensus 303 ~~~~~~----------~~-~~~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (564)
+..+.. .. ....|.++|.+++|+| ++++|++|+.|++|++||+++++....+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~--------------- 165 (343)
T 3lrv_A 101 YPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH--------------- 165 (343)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE---------------
T ss_pred EccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE---------------
Confidence 876432 22 2336778999999999 9999999999999999999876542211
Q ss_pred ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee-eeccc-ccccEEEE
Q 008467 370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV-HDLRE-HSKEIYTI 447 (564)
Q Consensus 370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~-~~~~~-~~~~i~~i 447 (564)
...|...|++++|+|++.+|++|+.||.|++||+++++.+ ..+.. |..+|.++
T Consensus 166 -------------------------~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l 220 (343)
T 3lrv_A 166 -------------------------SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEV 220 (343)
T ss_dssp -------------------------CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEE
T ss_pred -------------------------ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEE
Confidence 1224557899999999999999999999999999999887 77888 99999999
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC---CCCCEE--EEEEcCCCCEEEEEeC-CCcEEEEeC
Q 008467 448 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG---HREPVY--SLAFSPTGEYLASGSL-DKSMHIWSL 521 (564)
Q Consensus 448 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---h~~~i~--~~~~spdg~~lasgs~-dg~i~iw~~ 521 (564)
+|+|++. +|++++ |++|++||+++++.+..+.. |..++. +++|+|+|++|++|+. |+.|+||++
T Consensus 221 ~fs~~g~---------~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 221 KFADNGY---------WMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKF 290 (343)
T ss_dssp EECTTSS---------EEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EEeCCCC---------EEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence 9999875 788888 55999999998876554433 434444 6999999999999998 999999999
Q ss_pred CCCeEEEEEecCCCEEEEEEcc---CCCEEEEEEcCCcEEEE
Q 008467 522 KEGKIVKTYTGNGGIFEVCWNK---EGDKIAACFANHTVCVL 560 (564)
Q Consensus 522 ~~~~~~~~~~~~~~i~~~~w~~---~g~~la~~~~~~~v~v~ 560 (564)
.++...... ..+..++|++ +++.|++++.|+.+.++
T Consensus 291 ~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 291 DKKTKNWTK---DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp CTTTCSEEE---EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred cccccceEe---cCceeEecCccccccceeEEEecCCceEEE
Confidence 765433222 3467788988 88899999888888765
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.9e-31 Score=273.76 Aligned_cols=277 Identities=13% Similarity=0.100 Sum_probs=238.1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeE-----eecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc
Q 008467 276 KDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKC-----TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE 349 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~-----~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~ 349 (564)
..+.+++|+|++.++++++.++.|++|+.. +.... .+.+|.+.|.+++|++++..+++++.|++|++||+.+++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 346689999988888888889999999986 44444 345789999999999999999999999999999999999
Q ss_pred eeEEEeecccCeEEEEcCCCc--eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe--------C
Q 008467 350 WKQQFEFHSGPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--------D 419 (564)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s--------~ 419 (564)
....+..+...+..+.|.++. .+++++.++.|++|++..++.+..+..+. .+.+++|+|+++.|++++ .
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~~~~~ 281 (433)
T 3bws_A 203 YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-LPRGLLLSKDGKELYIAQFSASNQESG 281 (433)
T ss_dssp EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-EEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-CceEEEEcCCCCEEEEEECCCCccccC
Confidence 888888888888888886543 44566689999999999888887776654 589999999999999888 5
Q ss_pred CCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEE
Q 008467 420 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA 499 (564)
Q Consensus 420 dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~ 499 (564)
|+.|++||+.+++.+..+ .|...+..++|+|++. .++++++.|+.|++||+.+++.+..+. +...+.+++
T Consensus 282 dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~--------~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~ 351 (433)
T 3bws_A 282 GGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTEN--------KIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIA 351 (433)
T ss_dssp CEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTT--------EEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEE
T ss_pred CCeEEEEECCCCcEEeec-cCCCCcceEEECCCCC--------EEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEE
Confidence 899999999988876654 4566789999999874 467888999999999999999888776 667899999
Q ss_pred EcCCCCEEEEEeC---------------CCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEc-CCcEEEEEee
Q 008467 500 FSPTGEYLASGSL---------------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFA-NHTVCVLDFR 563 (564)
Q Consensus 500 ~spdg~~lasgs~---------------dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~-~~~v~v~~~~ 563 (564)
|+|+|++|++++. ||.|++||+.+++.+..+.....+..++|+|+|++|+++.. ++.|.||++.
T Consensus 352 ~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 352 LSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp ECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 9999999988876 57999999999999999988888999999999999998875 9999999975
No 114
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=5.9e-33 Score=277.26 Aligned_cols=276 Identities=12% Similarity=0.148 Sum_probs=210.1
Q ss_pred EccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEE
Q 008467 211 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 290 (564)
Q Consensus 211 ~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 290 (564)
.+.+|...|.+++|+|+|++||+|+.|+ ++||++.++.. ..... ...+..++|.++++.+
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-----------~~~~~--------~~~~~~~~~~~~~~~~ 73 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-----------IMSQE--------MRHLSKVRMLHRTNYV 73 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-----------EEEEE--------CSCCCEEEECTTSSEE
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-----------eeeee--------cCCeEEEEEcCCCCEE
Confidence 4578999999999999999999998775 78999764321 11111 1247788899988877
Q ss_pred -EEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc-ceeEEEeecccCeEEEEcC
Q 008467 291 -ATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDWR 367 (564)
Q Consensus 291 -~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~ 367 (564)
++|+.|+.|++||.. +.....+. |..+|.+++|+++. ++++ .|++|++||+.++ +.+..+.. ...+..+.+
T Consensus 74 ~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~-~~~~~~~s~- 147 (355)
T 3vu4_A 74 AFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR-FGGVCEFSN- 147 (355)
T ss_dssp EEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE-EEEEEEEET-
T ss_pred EEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc-CCceEEEEc-
Confidence 567788999999975 45555554 67799999999864 3333 5889999999887 55555544 222334443
Q ss_pred CCceEEE--EeCCCeEEEEEcCCCc---------------e-eeEecCCCcceEEEEECCCCCEEEEEeCCCc-EEEEeC
Q 008467 368 NNVSFAT--SSTDNMIYVCKIGENR---------------P-IKTFAGHQGEVNCVKWDPTGSLLASCSDDVT-AKIWNM 428 (564)
Q Consensus 368 ~~~~~~~--~~~d~~i~~~~~~~~~---------------~-~~~~~~h~~~i~~v~~~~~~~~las~s~dg~-i~iwd~ 428 (564)
..++. ++.++.|++|++.... | +..+.+|.+.|++++|+|+|++||+|+.|++ |+|||+
T Consensus 148 --~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~ 225 (355)
T 3vu4_A 148 --GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKT 225 (355)
T ss_dssp --TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEET
T ss_pred --cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 33443 6789999999998754 3 7889999999999999999999999999998 999999
Q ss_pred CCCeeeeecc-c-ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEE-----------------
Q 008467 429 KQDKYVHDLR-E-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYS----------------- 487 (564)
Q Consensus 429 ~~~~~~~~~~-~-~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~----------------- 487 (564)
++++++..+. + |...|++++|+|++. +|++++.|++|+|||++.+.. ...
T Consensus 226 ~~~~~~~~~~~g~h~~~v~~~~~s~~~~---------~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (355)
T 3vu4_A 226 EDGVLVREFRRGLDRADVVDMKWSTDGS---------KLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLC 296 (355)
T ss_dssp TTCCEEEEEECTTCCSCEEEEEECTTSC---------EEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSE
T ss_pred CCCcEEEEEEcCCCCCcEEEEEECCCCC---------EEEEEECCCEEEEEEccCCCCcccccccceeecccccccccee
Confidence 9999999998 5 999999999999875 799999999999999975421 111
Q ss_pred ---E-eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 008467 488 ---L-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 523 (564)
Q Consensus 488 ---~-~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~ 523 (564)
+ ..+..+...++|+|||++|++++.||.+++|++..
T Consensus 297 ~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 297 NFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp EEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred EEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 1 11122346799999999999999999999998754
No 115
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=100.00 E-value=6.7e-37 Score=224.31 Aligned_cols=86 Identities=50% Similarity=0.818 Sum_probs=69.3
Q ss_pred CcCccchhhhhHHHHHhcCCceeeeccccccCCccCCCCCCCCCchhHHHHHHhhceeEeeeeeecCCCCCCcccccccc
Q 008467 3 SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLEMEANLTCQSDVDMDEDFSFL 82 (564)
Q Consensus 3 ~i~s~evn~Li~ryl~E~g~~~sa~~~~~E~~~~~~~~~~~~ip~~aLv~~~qkgl~y~~~e~~~~~~~~~~~~~~~~~~ 82 (564)
||||+||||||||||||+||.||||+|++||+|++++++..+|||||||++|||||+|+++|.++ +++++.++.. ++
T Consensus 2 sitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~~~~~~VppgaLVsllQKGL~Y~~~E~~~-~~~g~~~~~~--~~ 78 (90)
T 2xtc_A 2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISI-NEDGTVFDGR--PI 78 (90)
T ss_dssp CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSCCCGGGSCTTHHHHHHHHHHHHHHHHHHT-TSSCCTTCC-----
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCccccccccCCcchHHHHHHHHHHHHHHHHHh-cCCCCccCCC--CC
Confidence 79999999999999999999999999999999999999888999999999999999999999999 6677765532 33
Q ss_pred ccccccchh
Q 008467 83 QPMDLITKD 91 (564)
Q Consensus 83 ~~~~~~~~~ 91 (564)
.+++++..+
T Consensus 79 ~~~~ll~~~ 87 (90)
T 2xtc_A 79 ESLSLIDAV 87 (90)
T ss_dssp ---------
T ss_pred Cchhhhhhc
Confidence 455554443
No 116
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.8e-32 Score=279.82 Aligned_cols=246 Identities=24% Similarity=0.448 Sum_probs=213.9
Q ss_pred EeecCCCCCEEEEEeCCC-CCEEEEeeCCCcEEEEECCC----------cceeEEEeecccCeEEEEcCCCc--eEEEEe
Q 008467 310 CTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKT----------EEWKQQFEFHSGPTLDVDWRNNV--SFATSS 376 (564)
Q Consensus 310 ~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 376 (564)
.....|.++|++++|+|+ +.+|++++.||.|++||+.+ ......+..|...+..+.|.+.. .+++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 345679999999999997 67899999999999999976 56667788899999999997653 789999
Q ss_pred CCCeEEEEEcCCCc-------eeeEecCCCcceEEEEECC-CCCEEEEEeCCCcEEEEeCCCC---eeeeecccccccEE
Q 008467 377 TDNMIYVCKIGENR-------PIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQD---KYVHDLREHSKEIY 445 (564)
Q Consensus 377 ~d~~i~~~~~~~~~-------~~~~~~~h~~~i~~v~~~~-~~~~las~s~dg~i~iwd~~~~---~~~~~~~~~~~~i~ 445 (564)
.|+.|++|++.... +...+.+|...|.+++|+| ++.+|++++.||.|++||+++. ..+..+..|...|.
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 99999999998732 2567789999999999999 6789999999999999999977 56777889999999
Q ss_pred EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEEEEeCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCC
Q 008467 446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSLKE 523 (564)
Q Consensus 446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~i~~~~~spdg~-~lasgs~dg~i~iw~~~~ 523 (564)
+++|+|.+. .+|++|+.||+|++||+++ +..+..+.+|..+|++++|+|+++ +|++++.||.|+|||+..
T Consensus 282 ~i~~~p~~~--------~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 282 CLSFNPYSE--------FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp EEEECSSCT--------TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred EEEeCCCCC--------CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 999999764 3789999999999999997 567888899999999999999995 699999999999999986
Q ss_pred --------------CeEEEEEecC-CCEEEEEEccCCC-EEEEEEcCCcEEEEEee
Q 008467 524 --------------GKIVKTYTGN-GGIFEVCWNKEGD-KIAACFANHTVCVLDFR 563 (564)
Q Consensus 524 --------------~~~~~~~~~~-~~i~~~~w~~~g~-~la~~~~~~~v~v~~~~ 563 (564)
..++..+.++ ..|.+++|+|++. .|++++.|+.|.||+++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp TTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 2556666554 4599999999999 99999999999999985
No 117
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-33 Score=304.80 Aligned_cols=251 Identities=25% Similarity=0.432 Sum_probs=209.6
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC---CceeEeecCCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCC
Q 008467 273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN---GDLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKT 347 (564)
Q Consensus 273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~---~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~ 347 (564)
.|...|++++|+|+|++|++|+.||.|+||+.. +.....+.+|.++|++++|+|+ +++|++|+.||+|++||+.+
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~ 86 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 86 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence 467889999999999999999999999999975 3455678899999999999988 99999999999999999876
Q ss_pred cceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC--CCEEEEEeCCCcEEE
Q 008467 348 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKI 425 (564)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~--~~~las~s~dg~i~i 425 (564)
+... .+..+.+|...|.+++|+|+ ++++++|+.||+|++
T Consensus 87 ~~~~---------------------------------------~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~v 127 (753)
T 3jro_A 87 GRWS---------------------------------------QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 127 (753)
T ss_dssp TEEE---------------------------------------EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred Cccc---------------------------------------ccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEE
Confidence 5321 23456779999999999999 999999999999999
Q ss_pred EeCCCCe--eeeecccccccEEEEEEccCCCCC-----CCCCCcEEEEEEeCCCeEEEEeCCCC----eEEEEEeCCCCC
Q 008467 426 WNMKQDK--YVHDLREHSKEIYTIRWSPTGSGT-----NNPNQQLILASASFDSTVKLWDVELG----KLLYSLNGHREP 494 (564)
Q Consensus 426 wd~~~~~--~~~~~~~~~~~i~~i~~~p~~~~~-----~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~h~~~ 494 (564)
||+++.. ....+..|...|.++.|+|..... ..+ +..+|++|+.||+|++||++++ ..+..+.+|..+
T Consensus 128 wdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~-d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~ 206 (753)
T 3jro_A 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK-ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW 206 (753)
T ss_dssp EECCSSSCCCCEEEECCSSCEEEEEECCCC---------CG-GGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred EEeecCCCcceeEeecCCCceEEEEecCcccccccccccCC-CCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc
Confidence 9998773 345567899999999999952100 000 1126899999999999999876 566788899999
Q ss_pred EEEEEEcCC---CCEEEEEeCCCcEEEEeCCCCeE------EEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 495 VYSLAFSPT---GEYLASGSLDKSMHIWSLKEGKI------VKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 495 i~~~~~spd---g~~lasgs~dg~i~iw~~~~~~~------~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
|++++|+|+ |++|++|+.||.|++||+.++.. .........|++++|+|+|++|++|+.||.|.|||++
T Consensus 207 V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 207 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp EEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred EEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 999999999 99999999999999999988641 1111234568899999999999999999999999975
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.9e-32 Score=277.58 Aligned_cols=243 Identities=14% Similarity=0.119 Sum_probs=180.4
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCce------eEeecCCCCCEEEEEeCC--------CCCEEEEeeCCCcEEEE
Q 008467 278 VTTLDWNGEGTLLATGSYDGQARIWSTNGDL------KCTLSKHKGPIFSLKWNK--------KGDYLLTGSCDKTAIVW 343 (564)
Q Consensus 278 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~------~~~~~~h~~~V~~l~~~~--------~~~~l~s~s~D~~v~iw 343 (564)
+....+++++.+|++|+.|++|+||+..... ...+.+|.+.|.+++|+| ++++|+|||.|++|+||
T Consensus 92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W 171 (393)
T 4gq1_A 92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW 171 (393)
T ss_dssp -----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred cceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence 3344455677889999999999999976432 234679999999999998 78899999999999999
Q ss_pred ECCCcceeEEEeecccCeEEEEcCCC--ceEEEEeCCCeEEEEEcCCCceeeE-------------------------ec
Q 008467 344 DVKTEEWKQQFEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKT-------------------------FA 396 (564)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~-------------------------~~ 396 (564)
|++++.....+..|..++.++.|.++ ..+++++.|+.|++|++..++.... ..
T Consensus 172 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 251 (393)
T 4gq1_A 172 RLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS 251 (393)
T ss_dssp EEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred ECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence 99988877778888889999999865 3689999999999999976543221 24
Q ss_pred CCCcceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCC-----------CCCCCCcEE
Q 008467 397 GHQGEVNCVKWD-PTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSG-----------TNNPNQQLI 464 (564)
Q Consensus 397 ~h~~~i~~v~~~-~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~-----------~~~~~~~~~ 464 (564)
+|...+.++.|+ |+++.|++++.|+++++||+..+.....+..|...+..+.+.|+... ...+....+
T Consensus 252 ~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (393)
T 4gq1_A 252 GIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYF 331 (393)
T ss_dssp CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEE
T ss_pred cccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEE
Confidence 677888999986 89999999999999999999988877777777777777766665321 012234567
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467 465 LASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 521 (564)
Q Consensus 465 l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~ 521 (564)
+++|+.||+|+|||+.+++++..+.+|..+|.+++|||||++||+++.+| +.+|.+
T Consensus 332 ~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 332 ATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp EEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred EEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 88999999999999999988888888999999999999999999999887 556654
No 119
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-33 Score=282.91 Aligned_cols=258 Identities=14% Similarity=0.084 Sum_probs=211.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467 275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 354 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 354 (564)
...|.+++|||||+++||++.|++|+ + +.....+.+|...|++++|+|+| .++++.+|+....... .+
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d--~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~~-~~ 82 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--Q--PKYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNGLL-NS 82 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--E--ECCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCSS-TT
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--c--ccccceecCCCccEEEEEECCCC-------CcceEEEEeCCCceEe-ec
Confidence 46799999999999999999999999 5 44444568999999999999999 5677777765433322 11
Q ss_pred eecccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEecCCCc-----ceEEEEECCCCCEEEEEeCCCcEEEEeC
Q 008467 355 EFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQG-----EVNCVKWDPTGSLLASCSDDVTAKIWNM 428 (564)
Q Consensus 355 ~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~-----~i~~v~~~~~~~~las~s~dg~i~iwd~ 428 (564)
.+...+.++.|.++ ..+++++.|+.+++|+... .+..+. |.. .|.+++|||||++||+|+.||+|+|||+
T Consensus 83 -~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~ 158 (588)
T 2j04_A 83 -QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSI 158 (588)
T ss_dssp -SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEEC
T ss_pred -CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEEC
Confidence 33677999999765 5689999999999999644 566666 665 4999999999999999999999999999
Q ss_pred CCCee-------eeec----ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE---EEEE-eCCCC
Q 008467 429 KQDKY-------VHDL----REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL---LYSL-NGHRE 493 (564)
Q Consensus 429 ~~~~~-------~~~~----~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~-~~h~~ 493 (564)
.++.. +.++ .+|...|.+++|+|+| +++++.|++|++||+..+.. ..++ .+|..
T Consensus 159 ~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-----------Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~ 227 (588)
T 2j04_A 159 RKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-----------LVAALSNNSVFSMTVSASSHQPVSRMIQNASRR 227 (588)
T ss_dssp CCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-----------EEEEETTCCEEEECCCSSSSCCCEEEEECCCSS
T ss_pred CCCccccccceeeeeeecccccccccEEEEEEcCCc-----------EEEEeCCCeEEEEECCCCccccceeeecccccC
Confidence 98752 5665 6677899999999963 67888999999999987763 3566 47888
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE-EEEecCCCEEEEEE--ccCCCEEEEEEcCCcEEEEEee
Q 008467 494 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV-KTYTGNGGIFEVCW--NKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 494 ~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~-~~~~~~~~i~~~~w--~~~g~~la~~~~~~~v~v~~~~ 563 (564)
.|.+++|+ |++||+++ +++|++|++.+++.. ..+.....+++++| +|+|+.|++++.+|+ +||.++
T Consensus 228 ~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 228 KITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred cEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 99999999 69999998 699999999998874 33344556899999 999999999999999 898753
No 120
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-31 Score=265.36 Aligned_cols=235 Identities=9% Similarity=0.055 Sum_probs=193.2
Q ss_pred EECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccC
Q 008467 282 DWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP 360 (564)
Q Consensus 282 ~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~ 360 (564)
.+.+++.+|++|+.||.|++|+.. +.....+. ..+|.++.|+|. +++++.|++|++|+...
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~------------- 104 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN------------- 104 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTT-------------
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccC-------------
Confidence 345678899999999999999975 44444444 567888889988 99999999999998754
Q ss_pred eEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEec-CCCcceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCeeeeec
Q 008467 361 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHDL 437 (564)
Q Consensus 361 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~v~~~~--~~~~las~s~dg~i~iwd~~~~~~~~~~ 437 (564)
.+.+|+......+..+. +|.+.|.+++|+| ++++|++|+.||+|++||+++++.+..+
T Consensus 105 -------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 165 (343)
T 3lrv_A 105 -------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH 165 (343)
T ss_dssp -------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE
T ss_pred -------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 34556666666555544 7888999999999 9999999999999999999999887655
Q ss_pred c-cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE-EEEeC-CCCCEEEEEEcCCCCEEEEEeCCC
Q 008467 438 R-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL-YSLNG-HREPVYSLAFSPTGEYLASGSLDK 514 (564)
Q Consensus 438 ~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~-h~~~i~~~~~spdg~~lasgs~dg 514 (564)
. .|...+.+++|+|++. +|++|+.||.|++||+++++.+ ..+.. |..+|++++|+|+|.+|++|+ |+
T Consensus 166 ~~~~~~~i~~~~~~pdg~---------~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~ 235 (343)
T 3lrv_A 166 SAKSDVEYSSGVLHKDSL---------LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQ 235 (343)
T ss_dssp CCCSSCCCCEEEECTTSC---------EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SS
T ss_pred ecCCCCceEEEEECCCCC---------EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CC
Confidence 3 3455899999999875 7999999999999999999877 78887 999999999999999999999 55
Q ss_pred cEEEEeCCCCeEEEEEec---C-CCE--EEEEEccCCCEEEEEEc-CCcEEEEEee
Q 008467 515 SMHIWSLKEGKIVKTYTG---N-GGI--FEVCWNKEGDKIAACFA-NHTVCVLDFR 563 (564)
Q Consensus 515 ~i~iw~~~~~~~~~~~~~---~-~~i--~~~~w~~~g~~la~~~~-~~~v~v~~~~ 563 (564)
.|++||+++++.+..+.. + ..+ ..++|+|+|++|++|+. ++.+.||++.
T Consensus 236 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 236 TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEc
Confidence 999999998876544321 1 112 46999999999999998 9999999874
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.98 E-value=1.3e-28 Score=249.06 Aligned_cols=273 Identities=12% Similarity=0.140 Sum_probs=220.1
Q ss_pred CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECC-C
Q 008467 229 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL-ATGSYDGQARIWSTN-G 306 (564)
Q Consensus 229 ~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l-~sg~~dg~i~vw~~~-~ 306 (564)
.++++++.|+.|++||+.+++. ..... ....+.+++|+|+|+++ ++++.|+.|++|+.. +
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~-------------~~~~~-----~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~ 64 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKV-------------TATIP-----VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN 64 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEE-------------EEEEE-----CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT
T ss_pred EEEEEcCCCCEEEEEECCCCeE-------------EEEee-----cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCC
Confidence 4688899999999999876532 11111 12458999999999976 677799999999975 4
Q ss_pred ceeEeecCCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCc--eEEEEeCCCeEEE
Q 008467 307 DLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV--SFATSSTDNMIYV 383 (564)
Q Consensus 307 ~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~i~~ 383 (564)
+....+..+. .+.+++|+|++++|+ +++.|+.|++||+.+++....+..+. .+..+.|.++. .+++++.++.|++
T Consensus 65 ~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~ 142 (391)
T 1l0q_A 65 NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSV 142 (391)
T ss_dssp EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEEECCCCCEEEEEeCCCCEEEE
Confidence 5555555554 899999999999875 55567999999999998877766543 56788887553 3467888999999
Q ss_pred EEcCCCceeeEecCCCcceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCc
Q 008467 384 CKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQ 462 (564)
Q Consensus 384 ~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l-as~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~ 462 (564)
|++.+++.+..+..|. .+.+++|+|+++.| ++++.|+.|++||+++++.+..+. +...+.+++|+|++.
T Consensus 143 ~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~-------- 212 (391)
T 1l0q_A 143 INTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGT-------- 212 (391)
T ss_dssp EETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSS--------
T ss_pred EECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCC--------
Confidence 9999998888887664 56899999999877 677889999999999988776665 456789999999875
Q ss_pred EEEEEEe---CCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEecC
Q 008467 463 LILASAS---FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL-ASGSLDKSMHIWSLKEGKIVKTYTGN 533 (564)
Q Consensus 463 ~~l~s~s---~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~l-asgs~dg~i~iw~~~~~~~~~~~~~~ 533 (564)
.|++++ .++.|++||+.+++.+..+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++++..+..+
T Consensus 213 -~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~ 285 (391)
T 1l0q_A 213 -KAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVG 285 (391)
T ss_dssp -EEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred -EEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECC
Confidence 455555 79999999999999988888765 57999999999987 67788999999999999998887643
No 122
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=4e-30 Score=265.52 Aligned_cols=237 Identities=14% Similarity=0.126 Sum_probs=199.4
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECC-Cc---eeEeec--------------------------------------
Q 008467 276 KDVTTLDWNGEGTLLATGSYDGQARIWSTN-GD---LKCTLS-------------------------------------- 313 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~---~~~~~~-------------------------------------- 313 (564)
.++++++|+++|++|+++ .++.|++|+.. |. ....+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468899999999966655 57899999953 44 333332
Q ss_pred ----------------CCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECC--CcceeEEEeecccCeEEEEcCCCceEEE
Q 008467 314 ----------------KHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVK--TEEWKQQFEFHSGPTLDVDWRNNVSFAT 374 (564)
Q Consensus 314 ----------------~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (564)
.|.+.|.+++|+|++++| ++|+.|++|++||+. ++.....+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~------------------ 145 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR------------------ 145 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE------------------
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec------------------
Confidence 344479999999999996 899999999999987 5544332211
Q ss_pred EeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeee----ecccccccEEEEEEc
Q 008467 375 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH----DLREHSKEIYTIRWS 450 (564)
Q Consensus 375 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~----~~~~~~~~i~~i~~~ 450 (564)
.+|...|++++|+|++++|++|+.||.+++|++.+..... .+.+|...|++++|+
T Consensus 146 ---------------------~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 204 (450)
T 2vdu_B 146 ---------------------FCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLI 204 (450)
T ss_dssp ---------------------EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEE
T ss_pred ---------------------ccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEc
Confidence 1456789999999999999999999999999998776544 778899999999999
Q ss_pred cC---CCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEE-EeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 008467 451 PT---GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 526 (564)
Q Consensus 451 p~---~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~ 526 (564)
|+ +. +|++|+.|++|++||+.+++++.. +.+|..+|++++|+ +|++|++|+.|+.|++||+.++++
T Consensus 205 p~~~~~~---------~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~ 274 (450)
T 2vdu_B 205 KDSDGHQ---------FIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN 274 (450)
T ss_dssp ECTTSCE---------EEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCE
T ss_pred CCCCCCc---------EEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE
Confidence 98 53 799999999999999999988877 56899999999999 999999999999999999999998
Q ss_pred EEEEec--------------------------CCCEEEEEEccCCCEEEEEE-cCCcEEEEEe
Q 008467 527 VKTYTG--------------------------NGGIFEVCWNKEGDKIAACF-ANHTVCVLDF 562 (564)
Q Consensus 527 ~~~~~~--------------------------~~~i~~~~w~~~g~~la~~~-~~~~v~v~~~ 562 (564)
+..+.. ...+..++|+|+|++|++++ .++.|.||++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 275 LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 888752 23588999999999999998 8999999998
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.5e-29 Score=242.13 Aligned_cols=274 Identities=14% Similarity=0.141 Sum_probs=188.1
Q ss_pred CCeEEEEECCCCC---EEEEEeCCCeEEEEECC-C---ceeEeecCCCCCEEEEEeCCCCCEEEE---------------
Q 008467 276 KDVTTLDWNGEGT---LLATGSYDGQARIWSTN-G---DLKCTLSKHKGPIFSLKWNKKGDYLLT--------------- 333 (564)
Q Consensus 276 ~~V~~l~~s~~g~---~l~sg~~dg~i~vw~~~-~---~~~~~~~~h~~~V~~l~~~~~~~~l~s--------------- 333 (564)
-+|.++-|-..|. .+++++. ..|++|+.. + +...+...|..+|..+.+.|+...|+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla 118 (356)
T 2w18_A 40 VDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF 118 (356)
T ss_dssp EEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC
T ss_pred EEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEE
Confidence 3577888877554 5666664 699999965 3 456677788877777766664322211
Q ss_pred -eeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEe---CCCeEEEEEcCC-CceeeEecCCCcceEEEEEC
Q 008467 334 -GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSS---TDNMIYVCKIGE-NRPIKTFAGHQGEVNCVKWD 408 (564)
Q Consensus 334 -~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~~~~~~~-~~~~~~~~~h~~~i~~v~~~ 408 (564)
+..|+++..|.+..+ +...+..+ ++..++.++ .|+.|++|++.. ++.+..+.+|...++.++|+
T Consensus 119 ~spd~~~~~~~l~s~g--------~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs 187 (356)
T 2w18_A 119 CSSDDESEKQVLLKSG--------NIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFA 187 (356)
T ss_dssp C------CCEEEEEEE--------EEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEE
T ss_pred ECCCccccccEEEeCC--------CeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEee
Confidence 111111111111111 11111111 233444443 499999999954 67778888999999999999
Q ss_pred C---CCCEEEEEeCCCcEEEEeCCCCeeeeecccccc---cEEEEEEccCCCCC---CCCCCcEEEEEEeCCCeEEEEeC
Q 008467 409 P---TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK---EIYTIRWSPTGSGT---NNPNQQLILASASFDSTVKLWDV 479 (564)
Q Consensus 409 ~---~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~---~i~~i~~~p~~~~~---~~~~~~~~l~s~s~dg~i~iwd~ 479 (564)
| ++.+||+||.|++|+|||++++++++++.+|.. .+.+++|+|++... ..+.....+++|+.|++|++||.
T Consensus 188 ~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~ 267 (356)
T 2w18_A 188 EVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINP 267 (356)
T ss_dssp EEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEET
T ss_pred ccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEEC
Confidence 9 789999999999999999999999999986543 56777899987411 01111123688999999999999
Q ss_pred CCCeEEEEE-----eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC-CEE-EEEEccCCCEEEEEE
Q 008467 480 ELGKLLYSL-----NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIF-EVCWNKEGDKIAACF 552 (564)
Q Consensus 480 ~~~~~~~~~-----~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~-~i~-~~~w~~~g~~la~~~ 552 (564)
.+++.+..+ .+|...+.+..++ +.++|+|+.|++|+|||+.+|++++++.++. .+. .++|+|||++||+|+
T Consensus 268 ~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS 345 (356)
T 2w18_A 268 KTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQ 345 (356)
T ss_dssp TTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEEC
T ss_pred CCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEE
Confidence 999987765 4676666555554 8899999999999999999999999998654 344 689999999999999
Q ss_pred cCCcEEEEEee
Q 008467 553 ANHTVCVLDFR 563 (564)
Q Consensus 553 ~~~~v~v~~~~ 563 (564)
.|++|+|||+.
T Consensus 346 ~D~TIklWd~~ 356 (356)
T 2w18_A 346 KDGNIFVYHYS 356 (356)
T ss_dssp TTSCEEEEEEC
T ss_pred CCCcEEEecCC
Confidence 99999999974
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.4e-28 Score=248.81 Aligned_cols=263 Identities=13% Similarity=0.117 Sum_probs=221.9
Q ss_pred CEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCcceeEEEeecccCeEEEE
Q 008467 288 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 365 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (564)
.++++++.|+.|++|+.. +.....+..|. .+.+++|+|+++++ ++++.|++|++||+.+++....+..+. .+..+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 468889999999999976 45555666664 58999999999987 677799999999999999888777655 778888
Q ss_pred cCCCc--eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeeeeecccccc
Q 008467 366 WRNNV--SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNMKQDKYVHDLREHSK 442 (564)
Q Consensus 366 ~~~~~--~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l-as~s~dg~i~iwd~~~~~~~~~~~~~~~ 442 (564)
|.++. .+++++.++.|++|++..++.+..+..| ..+.+++|+|+++.| ++++.|+.|++||+.+++.+..+..+ .
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~ 158 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R 158 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence 87554 3456667899999999999888877755 467999999999977 78888999999999999888877665 4
Q ss_pred cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe---CCCcEEEE
Q 008467 443 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS---LDKSMHIW 519 (564)
Q Consensus 443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs---~dg~i~iw 519 (564)
.+.+++|+|++. .++++++.|+.|++||+++++.+..+. +...+.+++|+|+|++|++++ .++.|++|
T Consensus 159 ~~~~~~~~~dg~--------~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~ 229 (391)
T 1l0q_A 159 SPKGIAVTPDGT--------KVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMI 229 (391)
T ss_dssp SEEEEEECTTSS--------EEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred CcceEEECCCCC--------EEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEE
Confidence 569999999874 355788899999999999999887776 456789999999999999888 68999999
Q ss_pred eCCCCeEEEEEecCCCEEEEEEccCCCEE-EEEEcCCcEEEEEee
Q 008467 520 SLKEGKIVKTYTGNGGIFEVCWNKEGDKI-AACFANHTVCVLDFR 563 (564)
Q Consensus 520 ~~~~~~~~~~~~~~~~i~~~~w~~~g~~l-a~~~~~~~v~v~~~~ 563 (564)
|+.+++.+..+..+..+..++|+|+|++| +++..++.|.|||++
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 230 DTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp ETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred ECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 99999999998888889999999999988 566779999999974
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=8.7e-29 Score=253.97 Aligned_cols=282 Identities=13% Similarity=0.097 Sum_probs=226.2
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467 217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 296 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 296 (564)
..+.+++|+|++.++++++.|+.|++||+.++.... .........+...|.+++|++++.++++++.|
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d 190 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVR------------LSPPEKYKKKLGFVETISIPEHNELWVSQMQA 190 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEE------------ECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEee------------ecCcccccccCCceeEEEEcCCCEEEEEECCC
Confidence 446689999987888888899999999988764210 00011123456789999999999999999999
Q ss_pred CeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCc-eEE
Q 008467 297 GQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFA 373 (564)
Q Consensus 297 g~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 373 (564)
+.|++|+... .....+..|...+.+++|+|++++++ +++.|++|++||+++++....+..+. .+..+.|.++. .++
T Consensus 191 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~ 269 (433)
T 3bws_A 191 NAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-LPRGLLLSKDGKELY 269 (433)
T ss_dssp TEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-EEEEEEECTTSSEEE
T ss_pred CEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-CceEEEEcCCCCEEE
Confidence 9999999764 56677788999999999999999885 55589999999999988877665543 46777886554 555
Q ss_pred EEe--------CCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCE-EEEEeCCCcEEEEeCCCCeeeeecccccccE
Q 008467 374 TSS--------TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSDDVTAKIWNMKQDKYVHDLREHSKEI 444 (564)
Q Consensus 374 ~~~--------~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~-las~s~dg~i~iwd~~~~~~~~~~~~~~~~i 444 (564)
+++ .|+.|++|++..++.+..+ .|...+.+++|+|+++. +++++.|+.|++||+.+++.+..+. +...+
T Consensus 270 ~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~ 347 (433)
T 3bws_A 270 IAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKP 347 (433)
T ss_dssp EEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSE
T ss_pred EEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCC
Confidence 554 5889999999888776654 56668899999999974 5777899999999999988877665 66789
Q ss_pred EEEEEccCCCCCCCCCCcEEEEEEeC---------------CCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 008467 445 YTIRWSPTGSGTNNPNQQLILASASF---------------DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 509 (564)
Q Consensus 445 ~~i~~~p~~~~~~~~~~~~~l~s~s~---------------dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~las 509 (564)
.+++|+|++. +|++++. ||.|++||+.+++.+..+..+ ..+.+++|+|+|++|++
T Consensus 348 ~~~~~s~dg~---------~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~ 417 (433)
T 3bws_A 348 NTIALSPDGK---------YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVI 417 (433)
T ss_dssp EEEEECTTSS---------EEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEE
T ss_pred CeEEEcCCCC---------EEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEE
Confidence 9999999875 4555554 679999999999998888764 57899999999999998
Q ss_pred EeC-CCcEEEEeCCC
Q 008467 510 GSL-DKSMHIWSLKE 523 (564)
Q Consensus 510 gs~-dg~i~iw~~~~ 523 (564)
++. |+.|++|++..
T Consensus 418 ~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 418 SDFLDHQIRVYRRDG 432 (433)
T ss_dssp EETTTTEEEEEEETT
T ss_pred EECCCCeEEEEEecC
Confidence 875 99999999863
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=3.4e-30 Score=260.98 Aligned_cols=275 Identities=14% Similarity=0.161 Sum_probs=190.9
Q ss_pred CeEEEEEC---CCCCEEEEEeCCCeEEEEECCCc-------e---eEeecCCCCCEEEEEeC------------------
Q 008467 277 DVTTLDWN---GEGTLLATGSYDGQARIWSTNGD-------L---KCTLSKHKGPIFSLKWN------------------ 325 (564)
Q Consensus 277 ~V~~l~~s---~~g~~l~sg~~dg~i~vw~~~~~-------~---~~~~~~h~~~V~~l~~~------------------ 325 (564)
...++.|. +++..++.++.++.|++|+.... . ......+..++..+.|+
T Consensus 17 ~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (393)
T 4gq1_A 17 RPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNS 96 (393)
T ss_dssp CEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------
T ss_pred CCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceee
Confidence 45667774 33333444456888999964210 0 01112234445554444
Q ss_pred --CCCCEEEEeeCCCcEEEEECCCcceeEE-----EeecccCeEEEEcC---------CCceEEEEeCCCeEEEEEcCCC
Q 008467 326 --KKGDYLLTGSCDKTAIVWDVKTEEWKQQ-----FEFHSGPTLDVDWR---------NNVSFATSSTDNMIYVCKIGEN 389 (564)
Q Consensus 326 --~~~~~l~s~s~D~~v~iwd~~~~~~~~~-----~~~~~~~~~~~~~~---------~~~~~~~~~~d~~i~~~~~~~~ 389 (564)
+++.+|++++.|++|+|||++++..... +..|.+.+.++.|. +...+++++.|++|++|++...
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~ 176 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE 176 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence 4556799999999999999988865432 45688899999996 3467899999999999999988
Q ss_pred ceeeEecCCCcceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeeeeec-------------------------cccccc
Q 008467 390 RPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDL-------------------------REHSKE 443 (564)
Q Consensus 390 ~~~~~~~~h~~~i~~v~~~~~~~-~las~s~dg~i~iwd~~~~~~~~~~-------------------------~~~~~~ 443 (564)
.++..+.+|...|.+++|+|++. +|++|+.|++|++||+++++..... .+|...
T Consensus 177 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 256 (393)
T 4gq1_A 177 GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASS 256 (393)
T ss_dssp EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSS
T ss_pred ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccc
Confidence 88888889999999999999875 7999999999999999876543221 345667
Q ss_pred EEEEEEc-cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcC--------------------
Q 008467 444 IYTIRWS-PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP-------------------- 502 (564)
Q Consensus 444 i~~i~~~-p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp-------------------- 502 (564)
+.++.|. |++. .|++++.|+++++||+..++....+..|...+..+.++|
T Consensus 257 v~~v~~~~~dg~---------~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (393)
T 4gq1_A 257 LANVRWIGSDGS---------GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRY 327 (393)
T ss_dssp CSEEEEETTTTC---------EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSC
T ss_pred ceeeeeecCCCC---------EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCC
Confidence 7778876 4543 689999999999999998877776666655555444433
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEe-cCCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 503 TGEYLASGSLDKSMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 503 dg~~lasgs~dg~i~iw~~~~~~~~~~~~-~~~~i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
++.++++|+.||.|++||+.+++.+.... +...|.+++|+|||++||+++.+| +.+|.
T Consensus 328 ~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 328 MDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp TTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEE
Confidence 34477889999999999999988766554 456799999999999999998765 55554
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=4.7e-30 Score=245.61 Aligned_cols=187 Identities=17% Similarity=0.198 Sum_probs=140.3
Q ss_pred CCCEEEEEe--CCCeEEEEEC--CCceeEeecCCCCCEEEEEeCC---CCCEEEEeeCCCcEEEEECCCcceeEEEeecc
Q 008467 286 EGTLLATGS--YDGQARIWST--NGDLKCTLSKHKGPIFSLKWNK---KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 358 (564)
Q Consensus 286 ~g~~l~sg~--~dg~i~vw~~--~~~~~~~~~~h~~~V~~l~~~~---~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 358 (564)
+|+++.+++ .|+.|++|+. +|+.+..+..|...+..++|++ ++..|++++.|++|+|||+.+++++..+..+.
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~ 223 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD 223 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC
T ss_pred CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC
Confidence 445555533 5888888886 3566677788999999999999 77999999999999999999988776654321
Q ss_pred cCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEE------------EEEeCCCcEEEE
Q 008467 359 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL------------ASCSDDVTAKIW 426 (564)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l------------as~s~dg~i~iw 426 (564)
. |...+.+++|+|+|+++ ++|+.|++|++|
T Consensus 224 ~--------------------------------------~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklW 265 (356)
T 2w18_A 224 S--------------------------------------YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVI 265 (356)
T ss_dssp -----------------------------------------CCCEEEEEEETTEEEEEEC------------CCEEEEEE
T ss_pred c--------------------------------------ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEE
Confidence 1 11245566677766654 778999999999
Q ss_pred eCCCCeeeeec-----ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEE-EEEE
Q 008467 427 NMKQDKYVHDL-----REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY-SLAF 500 (564)
Q Consensus 427 d~~~~~~~~~~-----~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~-~~~~ 500 (564)
|..+++.+..+ .+|...+.+..++ +. ++++|+.|++|+|||+.+++++.++.+|...+. +++|
T Consensus 266 d~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~---------~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vaf 334 (356)
T 2w18_A 266 NPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH---------CAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKW 334 (356)
T ss_dssp ETTTTEEEEEEEECCCTTCCCCEEEEEEE--TT---------EEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEE
T ss_pred ECCCCEEEEEEEeeccCCCcceeEccccC--CC---------EEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEE
Confidence 99999877654 2455444444433 21 689999999999999999999999999987655 5899
Q ss_pred cCCCCEEEEEeCCCcEEEEeC
Q 008467 501 SPTGEYLASGSLDKSMHIWSL 521 (564)
Q Consensus 501 spdg~~lasgs~dg~i~iw~~ 521 (564)
||||++||+|+.|++|+|||+
T Consensus 335 SPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 335 SGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCCEEEEEECCCcEEEecC
Confidence 999999999999999999985
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=7.6e-28 Score=252.87 Aligned_cols=312 Identities=12% Similarity=0.106 Sum_probs=242.4
Q ss_pred EECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 008467 223 AWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW 302 (564)
Q Consensus 223 ~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw 302 (564)
+|+|++.++++++.|++|.+||..+++.. ..... ...+..++|+|+|++|++++.|+.|++|
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~-------------~~i~~-----g~~~~~v~~spdg~~l~v~~~d~~V~v~ 205 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIV-------------KVIDT-----GYAVHISRMSASGRYLLVIGRDARIDMI 205 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEE-------------EEEEC-----STTEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEE-------------EEEec-----CcccceEEECCCCCEEEEECCCCeEEEE
Confidence 38999999999999999999998776421 11111 1228899999999999999999999999
Q ss_pred EC--C-CceeEeecCCCCCEEEEEeCC----CCCEEEEee-CCCcEEEEECCCcceeEEEeecc----------c-CeEE
Q 008467 303 ST--N-GDLKCTLSKHKGPIFSLKWNK----KGDYLLTGS-CDKTAIVWDVKTEEWKQQFEFHS----------G-PTLD 363 (564)
Q Consensus 303 ~~--~-~~~~~~~~~h~~~V~~l~~~~----~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~----------~-~~~~ 363 (564)
|. . +.....+. +...+.+++|+| +|+++++++ .+++|.+||..+++.+..+..+. . .+..
T Consensus 206 D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~ 284 (543)
T 1nir_A 206 DLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAA 284 (543)
T ss_dssp ETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred ECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEE
Confidence 98 3 45555665 445579999999 999999888 48999999999999888776422 2 3555
Q ss_pred EEcCC--CceEEEEeCCCeEEEEEcCCCceee--EecCCCcceEEEEECCCCCEEEE-EeCCCcEEEEeCCCCeeeeecc
Q 008467 364 VDWRN--NVSFATSSTDNMIYVCKIGENRPIK--TFAGHQGEVNCVKWDPTGSLLAS-CSDDVTAKIWNMKQDKYVHDLR 438 (564)
Q Consensus 364 ~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~--~~~~h~~~i~~v~~~~~~~~las-~s~dg~i~iwd~~~~~~~~~~~ 438 (564)
+.+.. ...+++...++.|.+|+....+.+. .+ .+...+..++|+|+|++|++ +..+++|.+||..+++++..+.
T Consensus 285 i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~ 363 (543)
T 1nir_A 285 IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD 363 (543)
T ss_dssp EEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred EEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec
Confidence 65543 4456777889999999998765433 33 35566888999999997655 4568999999999999887765
Q ss_pred c----ccccEEEEEEccCCCCCCCCCCcEEEEEEe-CCCeEEEEeCCC-------CeEEEEEeCCCCCEEEEEEcCCCCE
Q 008467 439 E----HSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVEL-------GKLLYSLNGHREPVYSLAFSPTGEY 506 (564)
Q Consensus 439 ~----~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~-------~~~~~~~~~h~~~i~~~~~spdg~~ 506 (564)
. |......+ ++|++. .++++++ .|++|++||+.+ .+++.++.+|...+..|+|+|||++
T Consensus 364 ~g~~ph~g~g~~~-~~p~~g--------~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~ 434 (543)
T 1nir_A 364 VGKTPHPGRGANF-VHPKYG--------PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH 434 (543)
T ss_dssp CSSSBCCTTCEEE-EETTTE--------EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCE
T ss_pred cCCCCCCCCCccc-CCCCCc--------cEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCc
Confidence 3 54433333 345432 3677776 689999999998 8999999999888899999999999
Q ss_pred EEEEe-------CCCcEEEEeCCCCeEE-EEE---------ecCCCEEEEEEccCCCEEEEEEc-----CCcEEEEEee
Q 008467 507 LASGS-------LDKSMHIWSLKEGKIV-KTY---------TGNGGIFEVCWNKEGDKIAACFA-----NHTVCVLDFR 563 (564)
Q Consensus 507 lasgs-------~dg~i~iw~~~~~~~~-~~~---------~~~~~i~~~~w~~~g~~la~~~~-----~~~v~v~~~~ 563 (564)
|++++ .+++|.+||+.+++.. ..+ .+...+..++|+|+|+.|.++.. ++.|.|||.+
T Consensus 435 l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~ 513 (543)
T 1nir_A 435 LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK 513 (543)
T ss_dssp EEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETT
T ss_pred EEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECC
Confidence 99987 2679999999999876 554 22346889999999999997743 6899999864
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=5.7e-28 Score=246.14 Aligned_cols=299 Identities=15% Similarity=0.159 Sum_probs=224.4
Q ss_pred cceEEEEECCCC-CEEEEEE----CCC----cEEEEeC--CCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC
Q 008467 217 SEVCACAWSPAG-SLLASGS----GDS----TARIWTI--ADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 285 (564)
Q Consensus 217 ~~V~~~~~sp~~-~~lasgs----~D~----~i~iW~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 285 (564)
..|...+|++.| .++++|+ .|| .++|||+ .+++... .....+ +...+..+++++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~-----------~~~~~~----~~~~~~~~~~~~ 127 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLA-----------QNSYKV----NKQWLRYAGHTA 127 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEE-----------EEEEEE----CGGGHHHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEe-----------eeEEEc----ChhHHHHHHHHH
Confidence 456778899987 4777887 568 8999999 7654210 011111 112233333332
Q ss_pred --------------CCCEEEEEeCC------CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCC---cEEE
Q 008467 286 --------------EGTLLATGSYD------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK---TAIV 342 (564)
Q Consensus 286 --------------~g~~l~sg~~d------g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~---~v~i 342 (564)
.+..++.++.+ +.|++||.++.....+..|...|.+++|+|+|++|++++.|+ .|++
T Consensus 128 ~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~ 207 (415)
T 2hqs_A 128 SDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVI 207 (415)
T ss_dssp HHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred HHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEE
Confidence 25666666654 799999998877778888999999999999999999999885 9999
Q ss_pred EECCCcceeEEEeecccCeEEEEcCCCce-EE-EEeCCC--eEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe
Q 008467 343 WDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FA-TSSTDN--MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 418 (564)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~d~--~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s 418 (564)
||+.+++.. .+..+...+..+.|.++.. ++ +++.++ .|++|++.+++. ..+..|...+.+++|+|||+.|++++
T Consensus 208 ~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s 285 (415)
T 2hqs_A 208 QTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTS 285 (415)
T ss_dssp EETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEE
T ss_pred EECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEE
Confidence 999998775 4555667788999986653 44 455444 599999987665 56778888999999999999988888
Q ss_pred C-CC--cEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC---CeEEEEeCCCCeEEEEEeCCC
Q 008467 419 D-DV--TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD---STVKLWDVELGKLLYSLNGHR 492 (564)
Q Consensus 419 ~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~h~ 492 (564)
. ++ .|.+||+.++.. ..+..+...+.+++|+|+|. +|++++.+ ..|++||+.+++. ..+..+.
T Consensus 286 ~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~---------~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~ 354 (415)
T 2hqs_A 286 DQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGK---------FMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF 354 (415)
T ss_dssp CTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSS---------EEEEEEECSSCEEEEEEETTTCCE-EECCCSS
T ss_pred CCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCC---------EEEEEECcCCceEEEEEECCCCCE-EEecCCC
Confidence 6 45 677779887764 34556777889999999886 45555543 5899999998876 3565554
Q ss_pred CCEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCeEEEEEec-CCCEEEEEEccCC
Q 008467 493 EPVYSLAFSPTGEYLASGSLDK---SMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEG 545 (564)
Q Consensus 493 ~~i~~~~~spdg~~lasgs~dg---~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~g 545 (564)
.+.+++|+|||++|++++.++ .|++||+..+. ...+.. .+.|.+++|+|.-
T Consensus 355 -~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 355 -LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp -SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECCCSSSEEEEEEECCCC
T ss_pred -CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc-EEEeeCCCCCCcCCcccccc
Confidence 899999999999999988877 79999997554 455554 4679999999964
No 130
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=1.4e-27 Score=262.21 Aligned_cols=333 Identities=15% Similarity=0.141 Sum_probs=239.2
Q ss_pred cceEEEEECCCCCEEEEEEC-CC-----cEEEEeCCCCCCCCCCCCCCce----EEEE--Eeeccccc-cCCCCeEEEEE
Q 008467 217 SEVCACAWSPAGSLLASGSG-DS-----TARIWTIADGTSNGGAQNGPLN----VLVL--KHVKGRTN-EKSKDVTTLDW 283 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~-D~-----~i~iW~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~-~~~~~V~~l~~ 283 (564)
..|.+++|||||++|++++. |+ .|++||+.++............ .+.. ........ .....|.+++|
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 46889999999999999998 88 8999999876421100000000 0000 00000000 00023788999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccC
Q 008467 284 NGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP 360 (564)
Q Consensus 284 s~~g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~ 360 (564)
||||++|++++. +.|++|+..+. ....+..|...+.+++|+|+|++|++++ ++.|++||+.+++.......+...
T Consensus 117 SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~ 194 (741)
T 2ecf_A 117 SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTT 194 (741)
T ss_dssp CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSS
T ss_pred CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccc
Confidence 999999999987 99999998876 6667778889999999999999999887 569999999988765543333221
Q ss_pred ----------------eEEEEcCCCc-eEEEEeCCC---------------------------------eEEEEEcCC-C
Q 008467 361 ----------------TLDVDWRNNV-SFATSSTDN---------------------------------MIYVCKIGE-N 389 (564)
Q Consensus 361 ----------------~~~~~~~~~~-~~~~~~~d~---------------------------------~i~~~~~~~-~ 389 (564)
+..+.|.++. .++.++.|+ .|++|++.+ +
T Consensus 195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 274 (741)
T 2ecf_A 195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA 274 (741)
T ss_dssp EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence 2557787554 455554443 788888877 6
Q ss_pred ceeeEec--CCCcceEEEEECCCCCEEEEEeC-----CCcEEEEeCCCCeeeeecccccc----cEEEEEEccCCCCCCC
Q 008467 390 RPIKTFA--GHQGEVNCVKWDPTGSLLASCSD-----DVTAKIWNMKQDKYVHDLREHSK----EIYTIRWSPTGSGTNN 458 (564)
Q Consensus 390 ~~~~~~~--~h~~~i~~v~~~~~~~~las~s~-----dg~i~iwd~~~~~~~~~~~~~~~----~i~~i~~~p~~~~~~~ 458 (564)
+...... .|...+.+++| |||+.|++++. +..|++||+.+++....+..+.. .+..+.|+|+|.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~---- 349 (741)
T 2ecf_A 275 QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS---- 349 (741)
T ss_dssp CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC----
T ss_pred ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe----
Confidence 6554433 47788999999 99999887653 56899999999887666555443 345788999875
Q ss_pred CCCcEEEEEEeCCCeEEEEeCC-CCeEEEEEeCCCCCEEEE-EEcCCCCEEEE-EeCCC--cEEEEeCCC-CeEEEEEec
Q 008467 459 PNQQLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYSL-AFSPTGEYLAS-GSLDK--SMHIWSLKE-GKIVKTYTG 532 (564)
Q Consensus 459 ~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~i~~~-~~spdg~~las-gs~dg--~i~iw~~~~-~~~~~~~~~ 532 (564)
++++++.||.++||.+. .+. ...+..|...|.++ +|||||++|+. ++.++ .++||++.. +.....+..
T Consensus 350 -----~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~ 423 (741)
T 2ecf_A 350 -----ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK 423 (741)
T ss_dssp -----EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC
T ss_pred -----EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc
Confidence 67888999988888765 355 77788888888887 59999998754 55555 899999864 565666666
Q ss_pred CCCEEEEEEccCCCEEEEEEcC----CcEEEEEe
Q 008467 533 NGGIFEVCWNKEGDKIAACFAN----HTVCVLDF 562 (564)
Q Consensus 533 ~~~i~~~~w~~~g~~la~~~~~----~~v~v~~~ 562 (564)
...+..++|+|||++|++.+.+ ..+.+++.
T Consensus 424 ~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~ 457 (741)
T 2ecf_A 424 APGMHSASFARNASVYVDSWSNNSTPPQIELFRA 457 (741)
T ss_dssp SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence 6778999999999999877654 34566653
No 131
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.95 E-value=8.8e-26 Score=256.80 Aligned_cols=323 Identities=11% Similarity=0.077 Sum_probs=236.3
Q ss_pred CceeEccCCccceEEEEECCCCCEEEEEECC------CcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCe--
Q 008467 207 SDVTILEGHTSEVCACAWSPAGSLLASGSGD------STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV-- 278 (564)
Q Consensus 207 ~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D------~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V-- 278 (564)
.....+.+|...|.+++|||||++||+++.+ ..|++|++.++.. ... ..+...+
T Consensus 43 g~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~--------------~~l----t~~~~~~~~ 104 (1045)
T 1k32_A 43 GSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI--------------KRI----TYFSGKSTG 104 (1045)
T ss_dssp CCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE--------------EEC----CCCCEEEET
T ss_pred CcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe--------------EEc----ccCCCcccc
Confidence 3456677899999999999999999988643 4799999876431 111 1122334
Q ss_pred -----EEEEECCCCCEEEEEeCC------CeEEEEECCCcee--------------------------------------
Q 008467 279 -----TTLDWNGEGTLLATGSYD------GQARIWSTNGDLK-------------------------------------- 309 (564)
Q Consensus 279 -----~~l~~s~~g~~l~sg~~d------g~i~vw~~~~~~~-------------------------------------- 309 (564)
..++|||||+++++++.+ ..|.+|+..+...
T Consensus 105 ~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~ 184 (1045)
T 1k32_A 105 RRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTR 184 (1045)
T ss_dssp TEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTC
T ss_pred cccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCc
Confidence 889999999987887754 3577776543221
Q ss_pred ------------EeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC-cceeEEEeecccCeEEEEcCCCceEEEEe
Q 008467 310 ------------CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQQFEFHSGPTLDVDWRNNVSFATSS 376 (564)
Q Consensus 310 ------------~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (564)
..+.+|...+.++.|+++ ..+++++.|+++.||.+.. +.....+..+. .+....|.++...++.+
T Consensus 185 ~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~ 262 (1045)
T 1k32_A 185 GKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS 262 (1045)
T ss_dssp CEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE
T ss_pred CCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE
Confidence 122456778888889887 5667778889999997653 22333333333 23334555444333333
Q ss_pred CCCeEEEEEcCCCceeeEecC-----------CCcceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCeeeeecccccc-c
Q 008467 377 TDNMIYVCKIGENRPIKTFAG-----------HQGEVNCVKWD-PTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK-E 443 (564)
Q Consensus 377 ~d~~i~~~~~~~~~~~~~~~~-----------h~~~i~~v~~~-~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~-~ 443 (564)
.++.|++|+... ..+..+.+ |...+.+++|+ |||+.|++++ ++.+.+|+..++... .+..|.. .
T Consensus 263 ~~~~i~~~d~~~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~ 339 (1045)
T 1k32_A 263 KGGSIYIFNPDT-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIR 339 (1045)
T ss_dssp ETTEEEEECTTT-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEE
T ss_pred eCCEEEEecCCc-eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcce
Confidence 589999999843 33445544 34578999999 9999999888 789999999877654 4566776 8
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE-EEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 008467 444 IYTIRWSPTGSGTNNPNQQLILASASFDSTVK-LWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 522 (564)
Q Consensus 444 i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~-iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~ 522 (564)
+..+.|+ ++. .|++++.++.+. +||+..++.. .+.+|...+..++|||||++||+++.++.|++||+.
T Consensus 340 ~~~~~~s-dg~---------~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~ 408 (1045)
T 1k32_A 340 YVRRGGD-TKV---------AFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE 408 (1045)
T ss_dssp EEEECSS-SEE---------EEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred EEeeeEc-CCC---------eEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECC
Confidence 8999998 764 577777788888 9999877654 444787889999999999999999999999999999
Q ss_pred CCeEEEEEec-CCCEEEEEEccCCCEEEEEEcCC----------cEEEEEee
Q 008467 523 EGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANH----------TVCVLDFR 563 (564)
Q Consensus 523 ~~~~~~~~~~-~~~i~~~~w~~~g~~la~~~~~~----------~v~v~~~~ 563 (564)
++++...... .+.+..++|+|||++||+++.++ .|.+||+.
T Consensus 409 tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 409 TGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp TCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred CCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence 9998877744 45578999999999999887654 89999864
No 132
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=1.9e-25 Score=254.00 Aligned_cols=337 Identities=13% Similarity=0.126 Sum_probs=247.1
Q ss_pred ceeEccCCccce-------EEEEECCCCCEEEEEECC------CcEEEEeCCCCCCCCCCCC------------------
Q 008467 208 DVTILEGHTSEV-------CACAWSPAGSLLASGSGD------STARIWTIADGTSNGGAQN------------------ 256 (564)
Q Consensus 208 ~~~~l~~h~~~V-------~~~~~sp~~~~lasgs~D------~~i~iW~~~~~~~~~~~~~------------------ 256 (564)
....|.+|...+ ..++|||||+++++++.+ ..+.+|++.++....-...
T Consensus 91 ~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~ 170 (1045)
T 1k32_A 91 EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNT 170 (1045)
T ss_dssp EEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESC
T ss_pred CeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccC
Confidence 345677888888 999999999988888755 3577777755432100000
Q ss_pred ------------CCceEEEEEe--eccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEC--CCceeEeecCCCCCEE
Q 008467 257 ------------GPLNVLVLKH--VKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST--NGDLKCTLSKHKGPIF 320 (564)
Q Consensus 257 ------------~~~~~~~~~~--~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~--~~~~~~~~~~h~~~V~ 320 (564)
.....+.... .......+...+.++.|+++ .++++++.+|.++||.. .+.....+..|. .+.
T Consensus 171 ~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~ 248 (1045)
T 1k32_A 171 FELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYY 248 (1045)
T ss_dssp SCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSC
T ss_pred CCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-Ccc
Confidence 0000010000 00011245677899999998 77778888899999974 355555566665 356
Q ss_pred EEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee-----------cccCeEEEEcC-CCce-EEEEeCCCeEEEEEcC
Q 008467 321 SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF-----------HSGPTLDVDWR-NNVS-FATSSTDNMIYVCKIG 387 (564)
Q Consensus 321 ~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~-~~~~~~d~~i~~~~~~ 387 (564)
.++|+|+|++|+++ .++.|.+||+....+. .+.. +...+..+.|. ++.. ++.++ ++.+++|+..
T Consensus 249 ~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~ 325 (1045)
T 1k32_A 249 PRHLNTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS 325 (1045)
T ss_dssp EEEEEESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT
T ss_pred eeeEcCCCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCC
Confidence 77999999998887 5899999998554433 3332 22346678887 6654 44444 8899999987
Q ss_pred CCceeeEecCCCc-ceEEEEECCCCCEEEEEeCCCcEE-EEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEE
Q 008467 388 ENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAK-IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 465 (564)
Q Consensus 388 ~~~~~~~~~~h~~-~i~~v~~~~~~~~las~s~dg~i~-iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l 465 (564)
.+... .+..|.. .+.+++|+ +|+.|++++.++.+. +|+..++... .+..|...+..++|+|+|. .|
T Consensus 326 ~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~---------~l 393 (1045)
T 1k32_A 326 GTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGK---------FA 393 (1045)
T ss_dssp SSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSS---------EE
T ss_pred CCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCC---------EE
Confidence 76544 4667777 89999999 999999999988888 9998877654 3447778899999999986 68
Q ss_pred EEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCC----------cEEEEeCCCCeEEEEEecCCC
Q 008467 466 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK----------SMHIWSLKEGKIVKTYTGNGG 535 (564)
Q Consensus 466 ~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg----------~i~iw~~~~~~~~~~~~~~~~ 535 (564)
++++.++.|++||+.+++....+.+|...+.+++|||||++||+++.++ .|++||+.+++..........
T Consensus 394 a~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~ 473 (1045)
T 1k32_A 394 VVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH 473 (1045)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSB
T ss_pred EEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcc
Confidence 8999999999999999998877778999999999999999999887654 899999999884333233445
Q ss_pred EEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 536 IFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 536 i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
+..++|+|||++|++++.++...+|+
T Consensus 474 ~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 474 DYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp EEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred cCCceEcCCCCEEEEEecccCCcCcc
Confidence 78899999999999998876665554
No 133
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=1.1e-24 Score=237.80 Aligned_cols=319 Identities=14% Similarity=0.161 Sum_probs=225.6
Q ss_pred eEEEEECCCCCEEEEEECCCcEEEEeCCCCCCC-CCCCCCCceEEEEEeecc---------ccccCCCCeEEEEECCCCC
Q 008467 219 VCACAWSPAGSLLASGSGDSTARIWTIADGTSN-GGAQNGPLNVLVLKHVKG---------RTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 219 V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~V~~l~~s~~g~ 288 (564)
+..+.|. |..+++++.|+ | +||+.+++.. . .+ ..+... ........|.+++|||| .
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~--------~l-~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~ 93 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQT--------TR-FSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G 93 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------C--------EE-EEHHHHHTTC-----------CCCEEEEETTT-T
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeE--------Ee-echhHhhhhccchhccccccccCceeEEECCC-C
Confidence 4457888 77778888888 7 9999876531 1 00 110000 00011256999999999 6
Q ss_pred EEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC-----cceeEEEeecccC---
Q 008467 289 LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-----EEWKQQFEFHSGP--- 360 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-----~~~~~~~~~~~~~--- 360 (564)
.++.+ .++.+++|+..+.....+..+...+.+++|+|+|++|+++ .|+.|++||+.+ ++...........
T Consensus 94 ~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 94 LVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp EEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred eEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 55555 4599999998876666666777888999999999999885 789999999998 7765544333332
Q ss_pred -----------eEEEEcCCCc-eEEEEe---------------------------------CCCeEEEEEcCCCceeeEe
Q 008467 361 -----------TLDVDWRNNV-SFATSS---------------------------------TDNMIYVCKIGENRPIKTF 395 (564)
Q Consensus 361 -----------~~~~~~~~~~-~~~~~~---------------------------------~d~~i~~~~~~~~~~~~~~ 395 (564)
+..+.|.++. .++.++ .+..|++|++.++......
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 3577887654 455554 4467999999887755443
Q ss_pred c--CCCcceEEEEECCCCCEEEEEeCCC-----cEEEEeCCCCeeeeecc-c-ccc---cEEEEEEcc--CCCCCCCCCC
Q 008467 396 A--GHQGEVNCVKWDPTGSLLASCSDDV-----TAKIWNMKQDKYVHDLR-E-HSK---EIYTIRWSP--TGSGTNNPNQ 461 (564)
Q Consensus 396 ~--~h~~~i~~v~~~~~~~~las~s~dg-----~i~iwd~~~~~~~~~~~-~-~~~---~i~~i~~~p--~~~~~~~~~~ 461 (564)
. .|...+.+++|+|||+.|++++.++ .|++||..+++....+. . +.. .+..+.|+| ++.
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~------- 324 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ------- 324 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE-------
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE-------
Confidence 2 5677899999999999999887775 89999999883333332 1 111 235678988 764
Q ss_pred cEEEEEEeCCCeEEEEeCC-CCeEEEEEeCCCCCEEE-EEEcCCCCEEEEEeC-CC----cEEEEeCCCCeEEEEEecCC
Q 008467 462 QLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYS-LAFSPTGEYLASGSL-DK----SMHIWSLKEGKIVKTYTGNG 534 (564)
Q Consensus 462 ~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~i~~-~~~spdg~~lasgs~-dg----~i~iw~~~~~~~~~~~~~~~ 534 (564)
++++++.||.++||.+. .+..+..+..|...+.+ ++|+|||++|+.++. ++ .|..|++.+++ +..+....
T Consensus 325 --~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~ 401 (706)
T 2z3z_A 325 --FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLTPES 401 (706)
T ss_dssp --EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESCCSS
T ss_pred --EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceeccCCC
Confidence 67888899999999876 67777888888888887 799999998866554 44 67777887776 34445566
Q ss_pred CEEEEEEccCCCEEEEEEcC----CcEEEEEee
Q 008467 535 GIFEVCWNKEGDKIAACFAN----HTVCVLDFR 563 (564)
Q Consensus 535 ~i~~~~w~~~g~~la~~~~~----~~v~v~~~~ 563 (564)
.+..++|+|||++|++.+.+ +.+.+||++
T Consensus 402 ~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 402 GMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp SEEEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred ceEEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence 78999999999999877554 458899864
No 134
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=1.4e-24 Score=221.02 Aligned_cols=272 Identities=13% Similarity=0.108 Sum_probs=211.0
Q ss_pred CeEEEEECCCCC-EEEEEe----CCC----eEEEEEC--C-Ccee--EeecCCCCCEEEEEeCC--------------CC
Q 008467 277 DVTTLDWNGEGT-LLATGS----YDG----QARIWST--N-GDLK--CTLSKHKGPIFSLKWNK--------------KG 328 (564)
Q Consensus 277 ~V~~l~~s~~g~-~l~sg~----~dg----~i~vw~~--~-~~~~--~~~~~h~~~V~~l~~~~--------------~~ 328 (564)
.|...+|++.|. ++++|+ .+| .+++||. . ++.. ..+.+|...+..+++++ .+
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~ 143 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR 143 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence 466778888774 666776 467 8999998 4 4544 45778888777777664 25
Q ss_pred CEEEEeeCC------CcEEEEECCCcceeEEEeecccCeEEEEcCCCc-eEEEEeCCC---eEEEEEcCCCceeeEecCC
Q 008467 329 DYLLTGSCD------KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFATSSTDN---MIYVCKIGENRPIKTFAGH 398 (564)
Q Consensus 329 ~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~---~i~~~~~~~~~~~~~~~~h 398 (564)
..++.++.+ ++|++||+..+ ....+..|...+..+.|.++. .++.++.++ .|++|++.+++.. .+.+|
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~ 221 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASF 221 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECC
T ss_pred CEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecC
Confidence 677766654 79999999754 456677788889999998654 567777664 9999999887764 56778
Q ss_pred CcceEEEEECCCCCEEE-EEeCCCc--EEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeC-CC--
Q 008467 399 QGEVNCVKWDPTGSLLA-SCSDDVT--AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF-DS-- 472 (564)
Q Consensus 399 ~~~i~~v~~~~~~~~la-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~-dg-- 472 (564)
.+.+.+++|+|||+.|+ +++.|+. |++||+.+++. ..+..|...+.+++|+|++. .|++++. ++
T Consensus 222 ~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~---------~l~~~s~~~g~~ 291 (415)
T 2hqs_A 222 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQ---------NLAFTSDQAGRP 291 (415)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSS---------EEEEEECTTSSC
T ss_pred CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCC---------EEEEEECCCCCc
Confidence 88999999999999877 6776665 99999988765 56778888999999999985 4555554 45
Q ss_pred eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEE
Q 008467 473 TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIA 549 (564)
Q Consensus 473 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d---g~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la 549 (564)
.|.+||+.+++. ..+..+...+.+++|||||++|++++.+ +.|++||+.++++.. +.....+..++|+|+|++|+
T Consensus 292 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~~~~~~~~~spdg~~l~ 369 (415)
T 2hqs_A 292 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSSTFLDETPSLAPNGTMVI 369 (415)
T ss_dssp EEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCCSSSCEEEEECTTSSEEE
T ss_pred EEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ecCCCCcCCeEEcCCCCEEE
Confidence 678889987764 4455677789999999999999988764 589999999988743 44445789999999999999
Q ss_pred EEEcCC---cEEEEEe
Q 008467 550 ACFANH---TVCVLDF 562 (564)
Q Consensus 550 ~~~~~~---~v~v~~~ 562 (564)
+++.++ .|.+||+
T Consensus 370 ~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 370 YSSSQGMGSVLNLVST 385 (415)
T ss_dssp EEEEETTEEEEEEEET
T ss_pred EEEcCCCccEEEEEEC
Confidence 887766 6788875
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=4.3e-25 Score=241.78 Aligned_cols=313 Identities=11% Similarity=0.093 Sum_probs=217.3
Q ss_pred eEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC--
Q 008467 219 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD-- 296 (564)
Q Consensus 219 V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d-- 296 (564)
+.+++|+|+|+++++ +.||+|++||+.+++.. .. ...+ ......|.+++|||||++|++++.+
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~----------~~---~~~~-~~~~~~v~~~~~SpDg~~l~~~~~~~~ 83 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTST----------VL---IEGK-KIESLRAIRYEISPDREYALFSYNVEP 83 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE----------EE---ECTT-TTTTTTCSEEEECTTSSEEEEEESCCC
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE----------EE---eccc-cccccccceEEECCCCCEEEEEecCcc
Confidence 567899999998877 78999999999776421 01 1111 0111248999999999999999875
Q ss_pred -------CeEEEEECCCceeEeec---CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCe-----
Q 008467 297 -------GQARIWSTNGDLKCTLS---KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT----- 361 (564)
Q Consensus 297 -------g~i~vw~~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~----- 361 (564)
+.+++|+..+.....+. .|...+..++|+|+|++|+.++. +.|++||+.+++..+....+...+
T Consensus 84 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~ 162 (723)
T 1xfd_A 84 IYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGL 162 (723)
T ss_dssp CSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEE
T ss_pred ceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcc
Confidence 78889998755433343 34455889999999999998876 799999999888766554433322
Q ss_pred -------------EEEEcCCCc-eEEEEeCC----------------------------------CeEEEEEcCCCceee
Q 008467 362 -------------LDVDWRNNV-SFATSSTD----------------------------------NMIYVCKIGENRPIK 393 (564)
Q Consensus 362 -------------~~~~~~~~~-~~~~~~~d----------------------------------~~i~~~~~~~~~~~~ 393 (564)
..+.|.++. .++.++.+ ..|++|++..+....
T Consensus 163 ~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~ 242 (723)
T 1xfd_A 163 SDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDL 242 (723)
T ss_dssp CCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCE
T ss_pred cceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeE
Confidence 568887664 45554432 278999998877555
Q ss_pred EecCC------CcceEEEEECCCCCEEEEEeC----CCcEEEEeCCCCeeeeecccc-cccE----EEEEEccCCCCCCC
Q 008467 394 TFAGH------QGEVNCVKWDPTGSLLASCSD----DVTAKIWNMKQDKYVHDLREH-SKEI----YTIRWSPTGSGTNN 458 (564)
Q Consensus 394 ~~~~h------~~~i~~v~~~~~~~~las~s~----dg~i~iwd~~~~~~~~~~~~~-~~~i----~~i~~~p~~~~~~~ 458 (564)
.+..+ ...+.+++|+|||++|++.+. +..|++||+.+++....+..+ ...+ ..+.|+|+|..
T Consensus 243 ~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~--- 319 (723)
T 1xfd_A 243 EMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRK--- 319 (723)
T ss_dssp ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCS---
T ss_pred EeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCe---
Confidence 56554 677999999999999877653 357999999988776554432 3333 37899998852
Q ss_pred CCCcEEEEEEeCCC------eEEEEe-CCCCe--EEEEEeCCCCCEEE-EEEcCCCCEEEEEeCC---CcEEEEeCCCCe
Q 008467 459 PNQQLILASASFDS------TVKLWD-VELGK--LLYSLNGHREPVYS-LAFSPTGEYLASGSLD---KSMHIWSLKEGK 525 (564)
Q Consensus 459 ~~~~~~l~s~s~dg------~i~iwd-~~~~~--~~~~~~~h~~~i~~-~~~spdg~~lasgs~d---g~i~iw~~~~~~ 525 (564)
++++++..++ .|.+|| ...+. +...+..+...+.. ++|||||++|+..+.+ +.+++|++....
T Consensus 320 ----l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~ 395 (723)
T 1xfd_A 320 ----FFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVG 395 (723)
T ss_dssp ----EEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSST
T ss_pred ----EEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCC
Confidence 2333366777 577777 34443 14445544444554 6999999999866554 789999986421
Q ss_pred --EEEEEec----CCCEEEEEEccCCCEEEEEEcC
Q 008467 526 --IVKTYTG----NGGIFEVCWNKEGDKIAACFAN 554 (564)
Q Consensus 526 --~~~~~~~----~~~i~~~~w~~~g~~la~~~~~ 554 (564)
....+.. ...+..++|+|||++|++.+.+
T Consensus 396 ~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~ 430 (723)
T 1xfd_A 396 NFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEG 430 (723)
T ss_dssp TCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCS
T ss_pred CCCcceecccccCCCCeEEEEECCCCCEEEEEccC
Confidence 2233332 3457899999999999876543
No 136
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=1.1e-23 Score=221.23 Aligned_cols=286 Identities=14% Similarity=0.133 Sum_probs=219.4
Q ss_pred eEEEEECCCCCEEEEEECCCcEEEEeC--CCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC----CCCEEEE
Q 008467 219 VCACAWSPAGSLLASGSGDSTARIWTI--ADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG----EGTLLAT 292 (564)
Q Consensus 219 V~~~~~sp~~~~lasgs~D~~i~iW~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~----~g~~l~s 292 (564)
+.+++|+|+|++|++++.|++|++||+ .+++. +.... ....+..++|+| +|+++++
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~-------------~~~i~-----~g~~p~~va~sp~~~~dg~~l~v 242 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK-------------VAEIK-----IGIEARSVESSKFKGYEDRYTIA 242 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE-------------EEEEE-----CCSEEEEEEECCSTTCTTTEEEE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE-------------EEEEe-----cCCCcceEEeCCCcCCCCCEEEE
Confidence 889999999999999999999999998 44321 11111 134578999999 9999999
Q ss_pred EeC-CCeEEEEECC-CceeEeecC----------CCC-CEEEEEeCCCCCE-EEEeeCCCcEEEEECCCcceeE--EEee
Q 008467 293 GSY-DGQARIWSTN-GDLKCTLSK----------HKG-PIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQ--QFEF 356 (564)
Q Consensus 293 g~~-dg~i~vw~~~-~~~~~~~~~----------h~~-~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~--~~~~ 356 (564)
+++ ++.|.+||.. ++....+.. |.. .+.++.++|++.. +++...+++|.+||..+.+... .+.
T Consensus 243 ~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~- 321 (543)
T 1nir_A 243 GAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG- 321 (543)
T ss_dssp EEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-
T ss_pred EEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-
Confidence 885 8999999975 344444443 233 6899999998765 5677788999999998765443 222
Q ss_pred cccCeEEEEcCCCce--EEEEeCCCeEEEEEcCCCceeeEecC----CCcceEEEEECCC-CCEEEEEe-CCCcEEEEeC
Q 008467 357 HSGPTLDVDWRNNVS--FATSSTDNMIYVCKIGENRPIKTFAG----HQGEVNCVKWDPT-GSLLASCS-DDVTAKIWNM 428 (564)
Q Consensus 357 ~~~~~~~~~~~~~~~--~~~~~~d~~i~~~~~~~~~~~~~~~~----h~~~i~~v~~~~~-~~~las~s-~dg~i~iwd~ 428 (564)
+.....++.|.++.. ++++..++.|.+||..+++.+..+.. |.+....+ ++|+ +.+++|++ .|++|.+||+
T Consensus 322 ~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~ 400 (543)
T 1nir_A 322 AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGT 400 (543)
T ss_dssp CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEe
Confidence 333455667765543 45566789999999999988877764 65444333 4677 67777776 6899999999
Q ss_pred CC-------CeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEe-------CCCeEEEEeCCCCeEE-EEE-----
Q 008467 429 KQ-------DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS-------FDSTVKLWDVELGKLL-YSL----- 488 (564)
Q Consensus 429 ~~-------~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s-------~dg~i~iwd~~~~~~~-~~~----- 488 (564)
.+ .+++.++..|...+..++++|++. .|.+++ .+++|.+||+.+++.. ..+
T Consensus 401 ~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~---------~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~ 471 (543)
T 1nir_A 401 DPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSS---------HLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEW 471 (543)
T ss_dssp CTTTCTTTBTSEEEEEECSCSCCCCEECCTTCC---------EEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHH
T ss_pred CCCCCchhcCeEEEEEEcCCCCceEEEcCCCCC---------cEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhh
Confidence 88 888999999988888999999986 567665 2679999999988876 333
Q ss_pred ---eCCCCCEEEEEEcCCCCEEEEEe-----CCCcEEEEeCCCCeEEEEEecC
Q 008467 489 ---NGHREPVYSLAFSPTGEYLASGS-----LDKSMHIWSLKEGKIVKTYTGN 533 (564)
Q Consensus 489 ---~~h~~~i~~~~~spdg~~lasgs-----~dg~i~iw~~~~~~~~~~~~~~ 533 (564)
..+...+..+.|+|+|++|..+. .|+.|.|||.+++++++++...
T Consensus 472 ~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 472 ADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp HCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred cccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence 34567899999999999988652 4799999999999999988753
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=1.2e-22 Score=201.96 Aligned_cols=268 Identities=12% Similarity=0.138 Sum_probs=211.2
Q ss_pred CCeEEEEECCCCCEEEEEeC-------CCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECC
Q 008467 276 KDVTTLDWNGEGTLLATGSY-------DGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVK 346 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~-------dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~ 346 (564)
..+..++|+|+|+++++++. ++.|.+||... .....+.. ...+.++.|+|+|++++ +...++.|.+||+.
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 45789999999998888874 56899999764 44444443 34467899999999655 45557999999999
Q ss_pred CcceeEEEeecccC---------eEEEEcCCC--ceEEEE-eCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEE
Q 008467 347 TEEWKQQFEFHSGP---------TLDVDWRNN--VSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL 414 (564)
Q Consensus 347 ~~~~~~~~~~~~~~---------~~~~~~~~~--~~~~~~-~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l 414 (564)
+++....+..+... ...+.|.++ ..+++. +.++.|++|+..+.+.+..+..+...+.+++|+|+++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 199 (353)
T 3vgz_A 120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRL 199 (353)
T ss_dssp TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEE
T ss_pred CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEE
Confidence 99988877664322 455666543 344444 358899999999988888887666678899999999999
Q ss_pred EEEeCCCcEEEEeCCCCeeeeeccc----ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC
Q 008467 415 ASCSDDVTAKIWNMKQDKYVHDLRE----HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG 490 (564)
Q Consensus 415 as~s~dg~i~iwd~~~~~~~~~~~~----~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 490 (564)
++++.++.|.+||..+++.+..+.. +...+..++|+|++. .++++...++.|.+||+.+++.+..+..
T Consensus 200 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--------~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 271 (353)
T 3vgz_A 200 YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ--------RAFITDSKAAEVLVVDTRNGNILAKVAA 271 (353)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT--------EEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred EEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC--------EEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence 9999999999999999988776654 455678899999875 3455555669999999999998887765
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcC
Q 008467 491 HREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN 554 (564)
Q Consensus 491 h~~~i~~~~~spdg~~lasgs-~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~ 554 (564)
.. + ..++|+|+|+++++++ .++.|.+||..+++.+..+.....+..++|+|+|++|.++..+
T Consensus 272 ~~-~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 272 PE-S-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp SS-C-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred CC-C-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 43 2 5799999999765555 6899999999999999988877788999999999988777655
No 138
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=4.9e-24 Score=234.09 Aligned_cols=277 Identities=13% Similarity=0.107 Sum_probs=208.7
Q ss_pred CCCeEEEEECCCCCEEEEEeC-CC-----eEEEEECCCc-eeEeecCCCC------------------------CEEEEE
Q 008467 275 SKDVTTLDWNGEGTLLATGSY-DG-----QARIWSTNGD-LKCTLSKHKG------------------------PIFSLK 323 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~sg~~-dg-----~i~vw~~~~~-~~~~~~~h~~------------------------~V~~l~ 323 (564)
...|.+++|||||++|++++. || .|++|+..+. ....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 356999999999999999998 88 8999998654 4444443332 378899
Q ss_pred eCCCCCEEEEeeCCCcEEEEECCCcc--eeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcc
Q 008467 324 WNKKGDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE 401 (564)
Q Consensus 324 ~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~ 401 (564)
|+|+|++|++++. ++|++||+.++. ....+..+...+..+.|.++...+....++.|++|++..+........+...
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~ 194 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTT 194 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSS
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccc
Confidence 9999999999886 999999998872 2334555667788899987766544445679999999887766554444332
Q ss_pred ----------------eEEEEECCCCCEEEEEeCCC---------------------------------cEEEEeCCC-C
Q 008467 402 ----------------VNCVKWDPTGSLLASCSDDV---------------------------------TAKIWNMKQ-D 431 (564)
Q Consensus 402 ----------------i~~v~~~~~~~~las~s~dg---------------------------------~i~iwd~~~-~ 431 (564)
+.+++|+|||+.|++++.|+ .|.+||+.+ +
T Consensus 195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 274 (741)
T 2ecf_A 195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA 274 (741)
T ss_dssp EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence 47899999999999988765 788999988 7
Q ss_pred eeeeecc--cccccEEEEEEccCCCCCCCCCCcEEEEEEe-----CCCeEEEEeCCCCeEEEEEeCCCC----CEEEEEE
Q 008467 432 KYVHDLR--EHSKEIYTIRWSPTGSGTNNPNQQLILASAS-----FDSTVKLWDVELGKLLYSLNGHRE----PVYSLAF 500 (564)
Q Consensus 432 ~~~~~~~--~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s-----~dg~i~iwd~~~~~~~~~~~~h~~----~i~~~~~ 500 (564)
+...... .|...+..++| |+|. .|+.++ .+..|++||+.++++...+..+.. .+.+++|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~-pDg~---------~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 275 QTQWIDLGKEQDIYLARVNW-RDPQ---------HLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF 344 (741)
T ss_dssp CCEEECCCSCSSEEEEEEEE-EETT---------EEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred ceEEecCCCCcceEEEEEEe-CCCC---------EEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence 6544332 47778999999 9986 344443 357899999999988766655443 4568999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCC-CCeEEEEEec-CCCEEEE-EEccCCCEEEEEEc-CC--cEEEEEee
Q 008467 501 SPTGEYLASGSLDKSMHIWSLK-EGKIVKTYTG-NGGIFEV-CWNKEGDKIAACFA-NH--TVCVLDFR 563 (564)
Q Consensus 501 spdg~~lasgs~dg~i~iw~~~-~~~~~~~~~~-~~~i~~~-~w~~~g~~la~~~~-~~--~v~v~~~~ 563 (564)
+|||+++++++.||.++||.+. +++ ...+.. ...+..+ +|+|+|+.|+++.. ++ .+.||++.
T Consensus 345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred CCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 9999999999999988888765 445 555543 4457777 59999998876554 44 78898874
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=8.2e-23 Score=201.39 Aligned_cols=270 Identities=11% Similarity=0.108 Sum_probs=198.5
Q ss_pred ECCCC-CEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECCCcce-eEEEeecc
Q 008467 283 WNGEG-TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEW-KQQFEFHS 358 (564)
Q Consensus 283 ~s~~g-~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~-~~~~~~~~ 358 (564)
|.+++ ..+++++.++.|++||.. ++....+..+..++ +++|+|+|+++++++. ++.|.+||+.+++. ...+..+.
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 83 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ 83 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC
Confidence 44544 457788889999999976 55555666666667 9999999997776665 89999999999987 66666666
Q ss_pred cCeEEEEcCCCce-EEEEeCC-C--eEEEEEcCCCceeeEecCCCcceEEEEECCCCCE-EEEEeCCCc-EEEEeCCCCe
Q 008467 359 GPTLDVDWRNNVS-FATSSTD-N--MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSDDVT-AKIWNMKQDK 432 (564)
Q Consensus 359 ~~~~~~~~~~~~~-~~~~~~d-~--~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~-las~s~dg~-i~iwd~~~~~ 432 (564)
.+...+.|.++.. ++++..+ + .|++|+...++.+..+..+ ....+++|+|+|++ ++++..++. |.+|++....
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g 162 (331)
T 3u4y_A 84 SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADG 162 (331)
T ss_dssp SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTC
T ss_pred CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCC
Confidence 5555477765543 4443333 2 8999999988887777654 34689999999985 455566688 9999987644
Q ss_pred eee----ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE---EEEEeCCCCCEEEEEEcCCCC
Q 008467 433 YVH----DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL---LYSLNGHREPVYSLAFSPTGE 505 (564)
Q Consensus 433 ~~~----~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~h~~~i~~~~~spdg~ 505 (564)
.+. ...........++|+|++. .+++++..++.|++||+.+++. +..+..+ ..+..++|+|||+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~spdg~--------~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~ 233 (331)
T 3u4y_A 163 VLFDTGQEFISGGTRPFNITFTPDGN--------FAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGS 233 (331)
T ss_dssp CEEEEEEEEECSSSSEEEEEECTTSS--------EEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSS
T ss_pred cEeecCCccccCCCCccceEECCCCC--------EEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCC
Confidence 331 1123345578999999875 3566667799999999998887 7777654 5668999999999
Q ss_pred EEEEEe-CCCcEEEEeCCCCeE--EEEEecC--------CCEEEEEEccCCCEEEEEEc-CCcEEEEEee
Q 008467 506 YLASGS-LDKSMHIWSLKEGKI--VKTYTGN--------GGIFEVCWNKEGDKIAACFA-NHTVCVLDFR 563 (564)
Q Consensus 506 ~lasgs-~dg~i~iw~~~~~~~--~~~~~~~--------~~i~~~~w~~~g~~la~~~~-~~~v~v~~~~ 563 (564)
+|++++ .++.|.+||+.++++ +..+... .....++|+|||++|+++.. ++.|.|||+.
T Consensus 234 ~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 234 TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS 303 (331)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence 876654 578899999999987 4444322 12345899999998876655 5689999974
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=9.2e-24 Score=203.89 Aligned_cols=253 Identities=16% Similarity=0.203 Sum_probs=191.6
Q ss_pred EEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC-cceeEEEeecc-cCeEEEEcCCC
Q 008467 292 TGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQQFEFHS-GPTLDVDWRNN 369 (564)
Q Consensus 292 sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~-~~~~~~~~~~~ 369 (564)
+++.++.|++|+..+.....+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.......+. ..+.++.|.++
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence 34678999999988766667777999999999999999999876 88999999998 87766554442 45667788655
Q ss_pred c-eEEEEe--C--CCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEE-EEeCCCcEEEEeCCC-Ceeeeecccccc
Q 008467 370 V-SFATSS--T--DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQ-DKYVHDLREHSK 442 (564)
Q Consensus 370 ~-~~~~~~--~--d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~la-s~s~dg~i~iwd~~~-~~~~~~~~~~~~ 442 (564)
. .++.++ . ...|+.++..... ...+..+. .+.+++|+|+++.|+ +++.|+.++||++.. ......+..+..
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 173 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG 173 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCC
Confidence 4 455555 2 3456666665544 33444333 488999999999877 788899999998632 233456677888
Q ss_pred cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC--------
Q 008467 443 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD-------- 513 (564)
Q Consensus 443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d-------- 513 (564)
.+.++.|+|++. .+++++..++.++||++. .+..+..+..|...+.+++|+|+|++|++++.+
T Consensus 174 ~~~~~~~s~dg~--------~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 245 (297)
T 2ojh_A 174 RNDGPDYSPDGR--------WIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPR 245 (297)
T ss_dssp CEEEEEECTTSS--------EEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred ccccceECCCCC--------EEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccc
Confidence 899999999875 344445569999999986 455667777788889999999999999988766
Q ss_pred ---CcEEEEeCCCCeEEEEE---ecCCCEEEEEEccCCCEEEEEEcCC
Q 008467 514 ---KSMHIWSLKEGKIVKTY---TGNGGIFEVCWNKEGDKIAACFANH 555 (564)
Q Consensus 514 ---g~i~iw~~~~~~~~~~~---~~~~~i~~~~w~~~g~~la~~~~~~ 555 (564)
+.|++||+.+++..... .....+..++|+|+|++|++++.+.
T Consensus 246 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 246 DLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 56999999988754333 2345688999999999999887653
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=1.5e-22 Score=200.07 Aligned_cols=292 Identities=12% Similarity=0.181 Sum_probs=196.4
Q ss_pred EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC-CeEEEEECC---
Q 008467 230 LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD-GQARIWSTN--- 305 (564)
Q Consensus 230 ~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d-g~i~vw~~~--- 305 (564)
++++++.|+.|++|++..... .. ..... .+...+.+++|+|+|++|++++.+ +.|++|+.+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~--------~~--~~~~~-----~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~ 71 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGA--------LT--LTQVV-----DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD 71 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSC--------EE--EEEEE-----ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred EEEeCCCCCeEEEEEECCCCc--------EE--EeeeE-----ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC
Confidence 455557899999999853110 01 11111 123467889999999999998887 999999975
Q ss_pred Ccee--EeecCCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECC---CcceeEEEeecccCeEEEEcCCCc-eE-EEEeC
Q 008467 306 GDLK--CTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVK---TEEWKQQFEFHSGPTLDVDWRNNV-SF-ATSST 377 (564)
Q Consensus 306 ~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~ 377 (564)
+... ..+..+. .+..++|+|++++|++++. ++.|.+||+. +......+..+ ..+..+.|.++. .+ +++..
T Consensus 72 ~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~ 149 (343)
T 1ri6_A 72 GALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALK 149 (343)
T ss_dssp CCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGG
T ss_pred CceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCC
Confidence 3322 2344333 7789999999998876655 8899999994 33333333322 235566676553 34 44448
Q ss_pred CCeEEEEEcCC-Cceee----EecC-CCcceEEEEECCCCCEEEE-EeCCCcEEEEeCCC--Cee--eeecc---cc---
Q 008467 378 DNMIYVCKIGE-NRPIK----TFAG-HQGEVNCVKWDPTGSLLAS-CSDDVTAKIWNMKQ--DKY--VHDLR---EH--- 440 (564)
Q Consensus 378 d~~i~~~~~~~-~~~~~----~~~~-h~~~i~~v~~~~~~~~las-~s~dg~i~iwd~~~--~~~--~~~~~---~~--- 440 (564)
++.|++|++.. ++... .+.. ....+.+++|+|++++++. +..++.|++|++.. +.. ...+. ..
T Consensus 150 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~ 229 (343)
T 1ri6_A 150 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD 229 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCS
T ss_pred CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccc
Confidence 99999999987 43321 2233 2346889999999997654 45799999999953 322 22221 11
Q ss_pred cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC--C--CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCCc
Q 008467 441 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE--L--GKLLYSLNGHREPVYSLAFSPTGEYLASGS-LDKS 515 (564)
Q Consensus 441 ~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~--~--~~~~~~~~~h~~~i~~~~~spdg~~lasgs-~dg~ 515 (564)
...+..++|+|++. .+++++..++.|++||+. . .+.+..+..+.. +.+++|+|+|++|++++ .++.
T Consensus 230 ~~~~~~i~~s~dg~--------~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~ 300 (343)
T 1ri6_A 230 TRWAADIHITPDGR--------HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHH 300 (343)
T ss_dssp CCCEEEEEECTTSS--------EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCE
T ss_pred cCCccceEECCCCC--------EEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCe
Confidence 23566899999875 355567789999999998 3 344555655544 88999999999988887 6899
Q ss_pred EEEE--eCCCCeE--EEEEecCCCEEEEEEccCCCE
Q 008467 516 MHIW--SLKEGKI--VKTYTGNGGIFEVCWNKEGDK 547 (564)
Q Consensus 516 i~iw--~~~~~~~--~~~~~~~~~i~~~~w~~~g~~ 547 (564)
|.+| |..+|++ +..+........++|.++-+.
T Consensus 301 v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~~ 336 (343)
T 1ri6_A 301 ISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHEGG 336 (343)
T ss_dssp EEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC--
T ss_pred EEEEEEcCCCceeeEccccccCCCCeeEEEEcccCC
Confidence 9999 5556653 445555456778888886543
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=2.5e-22 Score=197.98 Aligned_cols=276 Identities=8% Similarity=0.050 Sum_probs=196.2
Q ss_pred EECCCCC-EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC-CCeEE
Q 008467 223 AWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY-DGQAR 300 (564)
Q Consensus 223 ~~sp~~~-~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~-dg~i~ 300 (564)
.|.+++. .+++++.++.|++||+.+++.. .... .....+ .++|+|+|+++++++. ++.|+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-------------~~~~----~~~~~~-~~~~s~dg~~l~~~~~~~~~i~ 65 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEIL-------------NQIT----LGYDFV-DTAITSDCSNVVVTSDFCQTLV 65 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEE-------------EEEE----CCCCEE-EEEECSSSCEEEEEESTTCEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCccccee-------------eeEE----ccCCcc-eEEEcCCCCEEEEEeCCCCeEE
Confidence 4666654 5778889999999998776421 1111 113445 8999999997766665 89999
Q ss_pred EEECCC-ce-eEeecCCCCCEEEEEeCCCCCEEEEeeCCC---cEEEEECCCcceeEEEeecccCeEEEEcCCCc--eEE
Q 008467 301 IWSTNG-DL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDK---TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV--SFA 373 (564)
Q Consensus 301 vw~~~~-~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 373 (564)
+|+... .. ...+..+..+..+++|+|+|++++++..++ .|.+||+.+++.+..+.... ....+.|.++. .++
T Consensus 66 ~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~ 144 (331)
T 3u4y_A 66 QIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLIL 144 (331)
T ss_dssp EEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEE
T ss_pred EEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEE
Confidence 999854 44 556666777776699999999999665553 89999999998877766543 34677776653 556
Q ss_pred EEeCCCe-EEEEEcCCCceee----EecCCCcceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCee---eeecccccccE
Q 008467 374 TSSTDNM-IYVCKIGENRPIK----TFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNMKQDKY---VHDLREHSKEI 444 (564)
Q Consensus 374 ~~~~d~~-i~~~~~~~~~~~~----~~~~h~~~i~~v~~~~~~~~l-as~s~dg~i~iwd~~~~~~---~~~~~~~~~~i 444 (564)
+...++. +.+|++.....+. ..........+++|+|+|+++ +++..++.|++||+.+++. +..+..+ ..+
T Consensus 145 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~ 223 (331)
T 3u4y_A 145 IDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLP 223 (331)
T ss_dssp EEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCC
T ss_pred EecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCC
Confidence 6667677 9999987644321 112334457899999999955 5555789999999998887 6666543 556
Q ss_pred EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEEeCC----CC---CEEEEEEcCCCCEEEEEe-CCC
Q 008467 445 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGH----RE---PVYSLAFSPTGEYLASGS-LDK 514 (564)
Q Consensus 445 ~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h----~~---~i~~~~~spdg~~lasgs-~dg 514 (564)
..++|+|++. .++++...++.|.+||+.+++. +..+..+ .. .+..++|+|||++|++++ .++
T Consensus 224 ~~~~~spdg~--------~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 295 (331)
T 3u4y_A 224 GTIVVSRDGS--------TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISR 295 (331)
T ss_dssp CCEEECTTSS--------EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTT
T ss_pred ceEEECCCCC--------EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCC
Confidence 7899999875 3445555688999999999887 4444322 22 235689999999886655 467
Q ss_pred cEEEEeCCCCeE
Q 008467 515 SMHIWSLKEGKI 526 (564)
Q Consensus 515 ~i~iw~~~~~~~ 526 (564)
.|.+|++.+..+
T Consensus 296 ~v~v~d~~~~~~ 307 (331)
T 3u4y_A 296 ELKVFTISGKVV 307 (331)
T ss_dssp EEEEEETTSCEE
T ss_pred cEEEEEecCCcc
Confidence 999999987543
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=5.9e-23 Score=198.18 Aligned_cols=240 Identities=18% Similarity=0.280 Sum_probs=178.3
Q ss_pred ceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCC-CCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC
Q 008467 208 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIAD-GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 286 (564)
Q Consensus 208 ~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 286 (564)
....+..|...|.+++|+|+|++|++++ ++.|++|++.+ +.... ... ......|.+++|+|+
T Consensus 33 ~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~-------------~~~---~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 33 KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEK-------------VDT---GFATICNNDHGISPD 95 (297)
T ss_dssp EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEE-------------CCC---TTCCCBCSCCEECTT
T ss_pred ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceE-------------ecc---ccccccccceEECCC
Confidence 3445667889999999999999999987 88999999876 53210 000 112356788999999
Q ss_pred CCEEEEEeC--CCeEEEE--ECCCceeEeecCCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCcceeEEEeecccCe
Q 008467 287 GTLLATGSY--DGQARIW--STNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPT 361 (564)
Q Consensus 287 g~~l~sg~~--dg~i~vw--~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 361 (564)
|++|++++. ++..+|| +..+.....+..+. .+..++|+|++++|+ +++.|+.++||++....
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~------------ 162 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS------------ 162 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTT------------
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCC------------
Confidence 999999993 3455555 55554444454443 489999999999887 78889999999853211
Q ss_pred EEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe-CCCcEEEEeCC-CCeeeeeccc
Q 008467 362 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMK-QDKYVHDLRE 439 (564)
Q Consensus 362 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s-~dg~i~iwd~~-~~~~~~~~~~ 439 (564)
.....+..|...+.+++|+|+++.|+.++ .++.++||++. .+..+..+..
T Consensus 163 ----------------------------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 214 (297)
T 2ojh_A 163 ----------------------------GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD 214 (297)
T ss_dssp ----------------------------CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC
T ss_pred ----------------------------CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec
Confidence 01123345667789999999999887666 59999999986 4556677778
Q ss_pred ccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-----------CeEEEEeCCCCeE--EEEEeCCCCCEEEEEEcCCCCE
Q 008467 440 HSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----------STVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEY 506 (564)
Q Consensus 440 ~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-----------g~i~iwd~~~~~~--~~~~~~h~~~i~~~~~spdg~~ 506 (564)
|...+..+.|+|++. +|++++.+ +.|.+||+.+++. +..+.+|...+.+++|+|||++
T Consensus 215 ~~~~~~~~~~s~dg~---------~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 285 (297)
T 2ojh_A 215 SAYGDWFPHPSPSGD---------KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDE 285 (297)
T ss_dssp CSEEEEEEEECTTSS---------EEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSE
T ss_pred CCcccCCeEECCCCC---------EEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCE
Confidence 888899999999875 45555544 5799999988754 4555578888999999999999
Q ss_pred EEEEeCCC
Q 008467 507 LASGSLDK 514 (564)
Q Consensus 507 lasgs~dg 514 (564)
|++++.+.
T Consensus 286 l~~~~~~~ 293 (297)
T 2ojh_A 286 FAYVRYFP 293 (297)
T ss_dssp EEEEEECC
T ss_pred EEEEEecc
Confidence 98887653
No 144
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=1.6e-22 Score=199.98 Aligned_cols=265 Identities=11% Similarity=0.200 Sum_probs=188.9
Q ss_pred EEEEEeCCCeEEEEECC--Ccee-EeecCCCCCEEEEEeCCCCCEEEEeeCC-CcEEEEECC--Cccee--EEEeecccC
Q 008467 289 LLATGSYDGQARIWSTN--GDLK-CTLSKHKGPIFSLKWNKKGDYLLTGSCD-KTAIVWDVK--TEEWK--QQFEFHSGP 360 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~--~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~D-~~v~iwd~~--~~~~~--~~~~~~~~~ 360 (564)
++++++.++.|++|+.+ +... .....|...+.+++|+|+|++|++++.+ +.|.+|++. ++... ..+.... .
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~ 85 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S 85 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence 44555789999999975 3322 2233577788999999999999988887 999999987 55543 2333333 5
Q ss_pred eEEEEcCCCc--eEEEEeCCCeEEEEEcC---CCceeeEecCCCcceEEEEECCCCCEEEEEe-CCCcEEEEeCCC-Cee
Q 008467 361 TLDVDWRNNV--SFATSSTDNMIYVCKIG---ENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQ-DKY 433 (564)
Q Consensus 361 ~~~~~~~~~~--~~~~~~~d~~i~~~~~~---~~~~~~~~~~h~~~i~~v~~~~~~~~las~s-~dg~i~iwd~~~-~~~ 433 (564)
+..+.|.++. .++++..++.|.+|++. ....+..+..+ ..+.+++|+|+++++++++ .++.|++||+.+ ++.
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 5667776554 33455568899999994 33444454443 3588999999999888777 899999999987 543
Q ss_pred ee----eccc-ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--CeE--EEEEe----CC--CCCEEEE
Q 008467 434 VH----DLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--GKL--LYSLN----GH--REPVYSL 498 (564)
Q Consensus 434 ~~----~~~~-~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~--~~~~~----~h--~~~i~~~ 498 (564)
.. .+.. ....+..++|+|++. .+++++..++.|++|++.. ++. ...+. ++ ...+..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pdg~--------~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 236 (343)
T 1ri6_A 165 VAQDPAEVTTVEGAGPRHMVFHPNEQ--------YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI 236 (343)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSS--------EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred eeecccccccCCCCCcceEEECCCCC--------EEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence 21 2222 334678899999875 3455666899999999953 432 22222 11 2356789
Q ss_pred EEcCCCCEEE-EEeCCCcEEEEeCC--CC--eEEEEEecCCCEEEEEEccCCCEEEEEE-cCCcEEEEEee
Q 008467 499 AFSPTGEYLA-SGSLDKSMHIWSLK--EG--KIVKTYTGNGGIFEVCWNKEGDKIAACF-ANHTVCVLDFR 563 (564)
Q Consensus 499 ~~spdg~~la-sgs~dg~i~iw~~~--~~--~~~~~~~~~~~i~~~~w~~~g~~la~~~-~~~~v~v~~~~ 563 (564)
+|+|+|++|+ ++..++.|.+|++. ++ +.+..+.....+..++|+|+|++|+++. .++.+.||++.
T Consensus 237 ~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 237 HITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 9999999887 45579999999998 33 4555565555688999999999988887 57899999664
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=1.3e-23 Score=230.09 Aligned_cols=274 Identities=13% Similarity=0.177 Sum_probs=198.4
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCC---CEEEEEeCCCCCEEEEeeCC---------CcEEEEE
Q 008467 278 VTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKG---PIFSLKWNKKGDYLLTGSCD---------KTAIVWD 344 (564)
Q Consensus 278 V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~---~V~~l~~~~~~~~l~s~s~D---------~~v~iwd 344 (564)
+.+++|+|||+++++ +.||.|++|+.. +.....+..|.. .|.+++|+|+|++|++++.+ +.+.+||
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d 97 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence 567899999998776 789999999975 445555666664 49999999999999998775 7788999
Q ss_pred CCCcceeEEEeec---ccCeEEEEcCCCc-eEEEEeCCCeEEEEEcCCCceeeEecCCCcce------------------
Q 008467 345 VKTEEWKQQFEFH---SGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEV------------------ 402 (564)
Q Consensus 345 ~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i------------------ 402 (564)
+.+++. ..+... ...+..+.|.++. .++.++ ++.|++|++..+........+...+
T Consensus 98 ~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~ 175 (723)
T 1xfd_A 98 IPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH 175 (723)
T ss_dssp SSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred CCCCce-EeccCCccccccccccEECCCCCEEEEEE-CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence 998876 233222 2235667887665 444444 4899999998877766655544333
Q ss_pred EEEEECCCCCEEEEEeCCC----------------------------------cEEEEeCCCCeeeeecccc------cc
Q 008467 403 NCVKWDPTGSLLASCSDDV----------------------------------TAKIWNMKQDKYVHDLREH------SK 442 (564)
Q Consensus 403 ~~v~~~~~~~~las~s~dg----------------------------------~i~iwd~~~~~~~~~~~~~------~~ 442 (564)
.+++|+|||+.|++++.|+ .|++||+.+++....+..+ ..
T Consensus 176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~ 255 (723)
T 1xfd_A 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY 255 (723)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence 7899999999999987653 7999999888765555543 56
Q ss_pred cEEEEEEccCCCCCCCCCCcEEEEEEe----CCCeEEEEeCCCCeEEEEEeC-CCCCEE----EEEEcCCCCEEEE--Ee
Q 008467 443 EIYTIRWSPTGSGTNNPNQQLILASAS----FDSTVKLWDVELGKLLYSLNG-HREPVY----SLAFSPTGEYLAS--GS 511 (564)
Q Consensus 443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s----~dg~i~iwd~~~~~~~~~~~~-h~~~i~----~~~~spdg~~las--gs 511 (564)
.+..+.|+|+|. +|++.+ .+..|++||+.++++...+.. +...+. .++|||||++|+. +.
T Consensus 256 ~~~~~~~SpDg~---------~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 326 (723)
T 1xfd_A 256 YITMVKWATSTK---------VAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAI 326 (723)
T ss_dssp EEEEEEESSSSE---------EEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEE
T ss_pred eeEEEEEeCCCe---------EEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEec
Confidence 789999999875 454443 236799999999887665543 333333 7899999998775 45
Q ss_pred CCC------cEEEEe-CCCCe--EEEEEe-cCCCEEE-EEEccCCCEEEEEEcC---CcEEEEEee
Q 008467 512 LDK------SMHIWS-LKEGK--IVKTYT-GNGGIFE-VCWNKEGDKIAACFAN---HTVCVLDFR 563 (564)
Q Consensus 512 ~dg------~i~iw~-~~~~~--~~~~~~-~~~~i~~-~~w~~~g~~la~~~~~---~~v~v~~~~ 563 (564)
.++ .|.+|+ ..++. ....+. +...+.. ++|+|||+.|++.+.+ +.+.||++.
T Consensus 327 ~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 327 PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred ccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 677 577777 34444 033333 3344554 6999999999877665 678898874
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=1.7e-22 Score=220.61 Aligned_cols=278 Identities=10% Similarity=0.103 Sum_probs=201.4
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467 217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 296 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 296 (564)
..|.+++|||+ +.++.+ .|+.+++||+.++.. .... .+...+.+++|||||++|+++ .+
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~--------------~~l~----~~~~~~~~~~~SpdG~~la~~-~~ 140 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKV--------------TYLF----DTNEETASLDFSPVGDRVAYV-RN 140 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEE--------------EEEE----CCTTCCTTCEECTTSSEEEEE-ET
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCce--------------EEcc----CCcccccCCcCCCCCCEEEEE-EC
Confidence 56899999999 655554 469999999876531 0111 113457788999999999995 68
Q ss_pred CeEEEEECCC------ceeEeecCCCCC--------------EEEEEeCCCCCEEEEee---------------------
Q 008467 297 GQARIWSTNG------DLKCTLSKHKGP--------------IFSLKWNKKGDYLLTGS--------------------- 335 (564)
Q Consensus 297 g~i~vw~~~~------~~~~~~~~h~~~--------------V~~l~~~~~~~~l~s~s--------------------- 335 (564)
+.|++|+..+ ........+... +.++.|+|+|++|++++
T Consensus 141 ~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~ 220 (706)
T 2z3z_A 141 HNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAES 220 (706)
T ss_dssp TEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEE
T ss_pred CeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCce
Confidence 9999999864 333333333333 47899999999999987
Q ss_pred ------------CCCcEEEEECCCcceeEEEe--ecccCeEEEEcCCCce-EEEEeCCC-----eEEEEEcCCCceeeEe
Q 008467 336 ------------CDKTAIVWDVKTEEWKQQFE--FHSGPTLDVDWRNNVS-FATSSTDN-----MIYVCKIGENRPIKTF 395 (564)
Q Consensus 336 ------------~D~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~d~-----~i~~~~~~~~~~~~~~ 395 (564)
.+..|.+||+.+++...... .+...+..+.|.++.. ++.++.+. .|++|+..++.....+
T Consensus 221 ~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~ 300 (706)
T 2z3z_A 221 KPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTL 300 (706)
T ss_dssp EEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEE
T ss_pred EEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEE
Confidence 44679999999887654432 2344577889976654 55555554 8999999887333333
Q ss_pred c--CCCc---ceEEEEECC--CCCEEEEEeCCCcEEEEeCC-CCeeeeecccccccEEE-EEEccCCCCCCCCCCcEEEE
Q 008467 396 A--GHQG---EVNCVKWDP--TGSLLASCSDDVTAKIWNMK-QDKYVHDLREHSKEIYT-IRWSPTGSGTNNPNQQLILA 466 (564)
Q Consensus 396 ~--~h~~---~i~~v~~~~--~~~~las~s~dg~i~iwd~~-~~~~~~~~~~~~~~i~~-i~~~p~~~~~~~~~~~~~l~ 466 (564)
. .+.. .+.+++|+| +|+++++++.|+.++||++. ++..+..+..+...+.. +.|+|++. .+++
T Consensus 301 ~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~--------~l~~ 372 (706)
T 2z3z_A 301 FVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGT--------RLYF 372 (706)
T ss_dssp EEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSS--------EEEE
T ss_pred EEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCC--------EEEE
Confidence 2 2222 246789999 99999999999999999876 56667778778777877 79999875 3555
Q ss_pred EEeCCC----eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEeCCCCe
Q 008467 467 SASFDS----TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD----KSMHIWSLKEGK 525 (564)
Q Consensus 467 s~s~dg----~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d----g~i~iw~~~~~~ 525 (564)
+++.++ .|..||+.+++ +..+. |...+.+++|||||++|+.+..+ +.|++||+.+++
T Consensus 373 ~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 373 ESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 666665 67777887765 33443 66779999999999998876443 569999999887
No 147
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=4.2e-23 Score=220.08 Aligned_cols=260 Identities=13% Similarity=0.093 Sum_probs=197.5
Q ss_pred CCeEEEEECCCCCEEEEEeC-CCeEEEEECCCceeEeecCCC-CCEEEEEeCCCCCEEEEeeC---CCcEEEEECCC---
Q 008467 276 KDVTTLDWNGEGTLLATGSY-DGQARIWSTNGDLKCTLSKHK-GPIFSLKWNKKGDYLLTGSC---DKTAIVWDVKT--- 347 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~-dg~i~vw~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~---D~~v~iwd~~~--- 347 (564)
.+|.+++|+|||+.||+++. ||.++||+..+.....+..|. ..|.++.|+|+ +.+++++. +....+|.+..
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~ 100 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRP 100 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTST
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCC
Confidence 46999999999999999887 999999998776666666666 68999999999 66776665 55566765433
Q ss_pred cceeEEEeec-ccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCC----Cc
Q 008467 348 EEWKQQFEFH-SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD----VT 422 (564)
Q Consensus 348 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~d----g~ 422 (564)
+... .+... ...+..+.+..+..+++++.++.+.+|++.++++......+. .+++|+|||++||+++.+ +.
T Consensus 101 g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~ 176 (582)
T 3o4h_A 101 GEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVS 176 (582)
T ss_dssp TCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEE
T ss_pred Cccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeE
Confidence 2222 22211 112334444555444445555555599998876655444333 789999999999988877 78
Q ss_pred EEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEEeCCCCCEEEEE-
Q 008467 423 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLA- 499 (564)
Q Consensus 423 i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~~~- 499 (564)
|++||+.+++.. .+..|...+..++|+|+|. .|++++.++ .|++||+.+++.. .+.+|...+..++
T Consensus 177 i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~---------~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~ 245 (582)
T 3o4h_A 177 LFTSNLSSGGLR-VFDSGEGSFSSASISPGMK---------VTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRP 245 (582)
T ss_dssp EEEEETTTCCCE-EECCSSCEEEEEEECTTSC---------EEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCC
T ss_pred EEEEcCCCCCce-EeecCCCccccceECCCCC---------EEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhh
Confidence 999999887754 6678888899999999986 567888888 8999999998887 7777777677677
Q ss_pred -------EcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCc
Q 008467 500 -------FSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHT 556 (564)
Q Consensus 500 -------~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~ 556 (564)
|||||.++++++.|+++++|++ |+.... ..+.+.+++|+ +|+.+++++.+..
T Consensus 246 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~--~~~~v~~~~~s-dg~~l~~~s~~~~ 304 (582)
T 3o4h_A 246 TAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA--PQGNHGRVVLW-RGKLVTSHTSLST 304 (582)
T ss_dssp SEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC--CSSEEEEEEEE-TTEEEEEEEETTE
T ss_pred ccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc--CCCceEEEEec-CCEEEEEEcCCCC
Confidence 9999999999999999999999 776552 33568899999 9999888777644
No 148
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=5.8e-22 Score=195.38 Aligned_cols=270 Identities=13% Similarity=0.096 Sum_probs=196.7
Q ss_pred CEEEEEeCCCeEEEEECCC-ceeEeecC-CCC-CEEEEEeCCCCCEE-EEeeCCCcEEEEECCCcceeEEEeecc-----
Q 008467 288 TLLATGSYDGQARIWSTNG-DLKCTLSK-HKG-PIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHS----- 358 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~~-~~~~~~~~-h~~-~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~----- 358 (564)
+++++++.++.|++||... .....+.. +.. .+.+++|+|+|+++ ++++.++.|.+||+.+++....+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4789999999999999864 44444432 221 47889999999876 456667899999999998877665422
Q ss_pred cCeEEEEcCCCc-eEEEEe------------CCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEE
Q 008467 359 GPTLDVDWRNNV-SFATSS------------TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 425 (564)
Q Consensus 359 ~~~~~~~~~~~~-~~~~~~------------~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~i 425 (564)
..+..+.|.++. .++++. .++.|++|+..+.+.+..+.. ...+.+++|+|++++|+++ ++.|.+
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence 134456676544 444443 579999999988887776654 3457789999999988877 689999
Q ss_pred EeCCCCeeeeecccccccEEEEEEccCCCCCCCC--CCcE---EEEEEeCCC----------eEEEEeCCCCeEE-EEEe
Q 008467 426 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNP--NQQL---ILASASFDS----------TVKLWDVELGKLL-YSLN 489 (564)
Q Consensus 426 wd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~--~~~~---~l~s~s~dg----------~i~iwd~~~~~~~-~~~~ 489 (564)
||+.+++.+..+..+... ..+.|+|++...... .... ....+..++ .|.+||+.+++.. ..+.
T Consensus 159 ~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 237 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237 (337)
T ss_dssp EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred EECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecC
Confidence 999998877666543310 122567766421100 0000 111122222 5899999988764 3344
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 490 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 490 ~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
.+...+.+++|+|||++|+++ ++.|.+||+.+++.+..+.....+.+++|+|+|++|+++..++.|.|||++
T Consensus 238 ~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 238 IMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp ECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred CCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence 566678999999999999988 789999999999998888777778999999999999999889999999974
No 149
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=2e-20 Score=185.83 Aligned_cols=270 Identities=10% Similarity=0.056 Sum_probs=202.1
Q ss_pred ccceEEEEECCCCCEEEEEEC-------CCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 216 TSEVCACAWSPAGSLLASGSG-------DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 216 ~~~V~~~~~sp~~~~lasgs~-------D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
...+..++|+|++++|++++. ++.|.+||..+++.. ..... ...+..++|+|+|+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~-------------~~~~~-----~~~~~~~~~s~dg~ 101 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT-------------QAIHN-----DLKPFGATINNTTQ 101 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE-------------EEEEE-----SSCCCSEEEETTTT
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE-------------EEEec-----CCCcceEEECCCCC
Confidence 356788999999998888774 568999998765421 11110 12366789999999
Q ss_pred EEE-EEeCCCeEEEEECC-CceeEeecCCCCC---------EEEEEeCCCCCEEEEee--CCCcEEEEECCCcceeEEEe
Q 008467 289 LLA-TGSYDGQARIWSTN-GDLKCTLSKHKGP---------IFSLKWNKKGDYLLTGS--CDKTAIVWDVKTEEWKQQFE 355 (564)
Q Consensus 289 ~l~-sg~~dg~i~vw~~~-~~~~~~~~~h~~~---------V~~l~~~~~~~~l~s~s--~D~~v~iwd~~~~~~~~~~~ 355 (564)
+++ ++..++.|.+||.. +.....+..+... +.++.|+|+|+++++++ .++.|.+||+.+++....+.
T Consensus 102 ~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~ 181 (353)
T 3vgz_A 102 TLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ 181 (353)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC
T ss_pred EEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec
Confidence 555 45557999999975 4555555544322 68899999999887766 47899999999998887776
Q ss_pred ecccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEecC----CCcceEEEEECCCCCEEEEEe-CCCcEEEEeCC
Q 008467 356 FHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAG----HQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMK 429 (564)
Q Consensus 356 ~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~----h~~~i~~v~~~~~~~~las~s-~dg~i~iwd~~ 429 (564)
.+...+..+.|.++ ..+++++.++.+++|+..+.+.+..+.. +...+.+++|+|+++.++.++ .++.|.+||..
T Consensus 182 ~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~ 261 (353)
T 3vgz_A 182 NTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTR 261 (353)
T ss_dssp CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT
T ss_pred CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 44444556666543 4566677799999999998887776653 556788999999999766555 45999999999
Q ss_pred CCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 008467 430 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 509 (564)
Q Consensus 430 ~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~las 509 (564)
+++.+..+..... ..+.|+|++. .++++...++.|.+||+.+++.+..+... ..+.+++|+|||++|++
T Consensus 262 ~~~~~~~~~~~~~--~~~~~s~dg~--------~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v 330 (353)
T 3vgz_A 262 NGNILAKVAAPES--LAVLFNPARN--------EAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYV 330 (353)
T ss_dssp TCCEEEEEECSSC--CCEEEETTTT--------EEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEE
T ss_pred CCcEEEEEEcCCC--ceEEECCCCC--------EEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEE
Confidence 9888776664432 5688998874 35566667999999999999988887754 46799999999998776
Q ss_pred EeCCC
Q 008467 510 GSLDK 514 (564)
Q Consensus 510 gs~dg 514 (564)
+..++
T Consensus 331 ~~~~~ 335 (353)
T 3vgz_A 331 SVKQK 335 (353)
T ss_dssp EEECC
T ss_pred EEccc
Confidence 66553
No 150
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=4.3e-21 Score=189.15 Aligned_cols=273 Identities=10% Similarity=0.037 Sum_probs=198.3
Q ss_pred CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCC-CeEEEEECCCCCEE-EEEeCCCeEEEEECC-
Q 008467 229 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSK-DVTTLDWNGEGTLL-ATGSYDGQARIWSTN- 305 (564)
Q Consensus 229 ~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~l~~s~~g~~l-~sg~~dg~i~vw~~~- 305 (564)
.+|++++.++.|++||+.+++.. ..... .... .+..++|+|+|+.+ ++++.++.|.+|+..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~-------------~~~~~---~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 65 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVD-------------KVITI---ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT 65 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEE-------------EEEEC---TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEE-------------EEEEc---CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC
Confidence 47899999999999998765321 11110 1111 36789999999765 555667899999975
Q ss_pred CceeEeecC-C----CCCEEEEEeCCCCCEEEEee------------CCCcEEEEECCCcceeEEEeecccCeEEEEcCC
Q 008467 306 GDLKCTLSK-H----KGPIFSLKWNKKGDYLLTGS------------CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 368 (564)
Q Consensus 306 ~~~~~~~~~-h----~~~V~~l~~~~~~~~l~s~s------------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 368 (564)
+.....+.. + ...+.+++|+|+|++|++++ .++.|.+||+.+++....+.. ...+..+.|.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~ 144 (337)
T 1pby_B 66 GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR 144 (337)
T ss_dssp CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT
T ss_pred CCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC
Confidence 444444432 2 22567899999999998886 579999999999887776654 33445566765
Q ss_pred Cce-EEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CC-----------------------cE
Q 008467 369 NVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV-----------------------TA 423 (564)
Q Consensus 369 ~~~-~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg-----------------------~i 423 (564)
+.. ++++ ++.|++|++..++.+..+..+... ..+.|+|+++.++..+. ++ .|
T Consensus 145 dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 221 (337)
T 1pby_B 145 DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221 (337)
T ss_dssp TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred CCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccce
Confidence 543 4444 688999999988877766644311 12378999987655443 32 46
Q ss_pred EEEeCCCCeee-eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcC
Q 008467 424 KIWNMKQDKYV-HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP 502 (564)
Q Consensus 424 ~iwd~~~~~~~-~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp 502 (564)
.+||..+++.. ..+..+...+..++|+|++. +++++ ++.|++||+.+++.+..+..+ ..+.+++|+|
T Consensus 222 ~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~---------~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~ 289 (337)
T 1pby_B 222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKT---------RAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVST 289 (337)
T ss_dssp EEEETTTCCEEEEEEEECSSCEEEEEECTTSS---------EEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECT
T ss_pred EEEeCCCCCceEeecCCCCCceeeEEECCCCC---------EEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECC
Confidence 89999888764 23345566788999999875 45555 799999999999988777644 4578999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEecC
Q 008467 503 TGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 533 (564)
Q Consensus 503 dg~~lasgs~dg~i~iw~~~~~~~~~~~~~~ 533 (564)
||++|++++.++.|.+||+.+++.+..+...
T Consensus 290 dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 290 DGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp TSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred CCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 9999999999999999999999998887643
No 151
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=7.8e-22 Score=201.55 Aligned_cols=245 Identities=19% Similarity=0.190 Sum_probs=177.4
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECCC------------ceeE----eecCCCCCEEEEEeCCCCCEEE----Eee
Q 008467 276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNG------------DLKC----TLSKHKGPIFSLKWNKKGDYLL----TGS 335 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~------------~~~~----~~~~h~~~V~~l~~~~~~~~l~----s~s 335 (564)
..+..+++++++.++++|+.+| +++|+... .... ....|.++|.+++|+|+|++|+ +|+
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 3578899999999999999988 88886321 1110 1123567899999999999999 889
Q ss_pred CCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC-CCEE
Q 008467 336 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLL 414 (564)
Q Consensus 336 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~-~~~l 414 (564)
.|++|++||+.++.... .... ..-..+..+.+|...|.+++|+|+ +.+|
T Consensus 116 ~d~~v~iwd~~~~~~~~-----~~~~-------------------------~~~~~~~~~~~h~~~V~~v~~~p~~~~~l 165 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEA-----KQQK-------------------------RPFAYHKLLKDAGGMVIDMKWNPTVPSMV 165 (434)
T ss_dssp TEEEEEEEEHHHHHCTT-----CSSC-------------------------CCSEEEECCCSGGGSEEEEEECSSCTTEE
T ss_pred CCceEEEEEccccccCC-----cCCc-------------------------ceeeeeeccCCCCCceEEEEECCCCCCEE
Confidence 99999999986541000 0000 000113456789999999999998 8899
Q ss_pred EEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC--
Q 008467 415 ASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-- 492 (564)
Q Consensus 415 as~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-- 492 (564)
++|+.||+|++||++++..+.....|...|.+++|+|++. +|++|+.||+|++||++ ++....+..|.
T Consensus 166 as~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~---------~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~ 235 (434)
T 2oit_A 166 AVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGK---------QLAVGKQNGTVVQYLPT-LQEKKVIPCPPFY 235 (434)
T ss_dssp EEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSS---------CEEEEETTSCEEEECTT-CCEEEEECCCTTC
T ss_pred EEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCC---------EEEEEcCCCcEEEEccC-CcccccccCCccc
Confidence 9999999999999999877766777889999999999875 68999999999999998 66666654432
Q ss_pred -----CCEEEEEEcCCCCEEEEE-eCCC------cEEEEeCCCCe-----EEEEEec--------CCCEEEEEEccCCCE
Q 008467 493 -----EPVYSLAFSPTGEYLASG-SLDK------SMHIWSLKEGK-----IVKTYTG--------NGGIFEVCWNKEGDK 547 (564)
Q Consensus 493 -----~~i~~~~~spdg~~lasg-s~dg------~i~iw~~~~~~-----~~~~~~~--------~~~i~~~~w~~~g~~ 547 (564)
..|.+++|++++.++++. +.|| .+++|++.+.+ ....+.. ....+.+.+-++.++
T Consensus 236 ~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l 315 (434)
T 2oit_A 236 ESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDL 315 (434)
T ss_dssp CTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTE
T ss_pred CCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCE
Confidence 379999999999888653 3443 38999997642 1122211 112234555577787
Q ss_pred EEEEEc-CCcEEEEE
Q 008467 548 IAACFA-NHTVCVLD 561 (564)
Q Consensus 548 la~~~~-~~~v~v~~ 561 (564)
+.+++. ...|.|+.
T Consensus 316 ~~v~s~~s~dv~vl~ 330 (434)
T 2oit_A 316 VLAASAASTEVSILA 330 (434)
T ss_dssp EEEEETTCSBCEEEE
T ss_pred EEEecCCCCceeEEE
Confidence 776655 44566664
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=1.5e-21 Score=199.44 Aligned_cols=253 Identities=15% Similarity=0.164 Sum_probs=171.9
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEE----E
Q 008467 217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA----T 292 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~----s 292 (564)
..++.++|++++.+|++|+.|+ ++||+.................. .........+...|++++|+|+|++|+ +
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIV--DKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEE--ECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCccccc--ccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 4578899999999999999998 88887532111000000000110 000011112346799999999999999 7
Q ss_pred EeCCCeEEEEECCCc------------eeEeecCCCCCEEEEEeCCC-CCEEEEeeCCCcEEEEECCCcceeEEEeeccc
Q 008467 293 GSYDGQARIWSTNGD------------LKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 359 (564)
Q Consensus 293 g~~dg~i~vw~~~~~------------~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 359 (564)
|+.|+.|+||+.... ....+.+|..+|.+++|+|+ +++|++++.||+|++||++++...
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~-------- 185 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV-------- 185 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE--------
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce--------
Confidence 889999999996421 13456779999999999998 789999999999999999875311
Q ss_pred CeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccc
Q 008467 360 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 439 (564)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~ 439 (564)
....+|...|.+++|+|+|++|++|+.||+|++||.+ +.....+..
T Consensus 186 ---------------------------------~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~ 231 (434)
T 2oit_A 186 ---------------------------------CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPC 231 (434)
T ss_dssp ---------------------------------EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECC
T ss_pred ---------------------------------eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccC
Confidence 1234578889999999999999999999999999998 444444433
Q ss_pred c-------cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCe------EEEEeCCCCe----EE-EEEe-------CCCCC
Q 008467 440 H-------SKEIYTIRWSPTGSGTNNPNQQLILASASFDST------VKLWDVELGK----LL-YSLN-------GHREP 494 (564)
Q Consensus 440 ~-------~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~------i~iwd~~~~~----~~-~~~~-------~h~~~ 494 (564)
| ...+.++.|++++. ++++.++.||. +++|++++.. .. ..+. +.+.+
T Consensus 232 ~~~~~~~~~~~v~~v~w~~~~~--------~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~ 303 (434)
T 2oit_A 232 PPFYESDHPVRVLDVLWIGTYV--------FAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQH 303 (434)
T ss_dssp CTTCCTTSCEEEEEEEEEETTE--------EEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCC
T ss_pred CcccCCCCceeEEEEEEecCce--------EEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCc
Confidence 3 33789999998653 34444555543 8999998542 11 1111 22334
Q ss_pred EEEEEEcCCCCEEEEEeC-CCcEEEEeCC
Q 008467 495 VYSLAFSPTGEYLASGSL-DKSMHIWSLK 522 (564)
Q Consensus 495 i~~~~~spdg~~lasgs~-dg~i~iw~~~ 522 (564)
-..+.+-++.+++++++. .+.|.|....
T Consensus 304 ~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 304 HYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp CEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred ceeeehhccCCEEEEecCCCCceeEEEec
Confidence 344444477777766554 4556666643
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=9.2e-22 Score=215.23 Aligned_cols=317 Identities=12% Similarity=0.057 Sum_probs=213.0
Q ss_pred EEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC-----
Q 008467 221 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY----- 295 (564)
Q Consensus 221 ~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~----- 295 (564)
.++|+|+|++++++ .|+.|++|++.++... ..+ ..+. .....|.+++|||||++|++++.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~----------~~~---~~~~-~~~~~~~~~~~SpDg~~la~~~~~~~~~ 84 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY----------TIL---SNRT-MKSVNASNYGLSPDRQFVYLESDYSKLW 84 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEE----------EEE---CHHH-HHTTTCSEEEECTTSSEEEEEEEEEECS
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE----------EEE---cccc-ccccceeeEEECCCCCeEEEEecCceeE
Confidence 57899999766654 6999999999876421 011 1110 00124889999999999999876
Q ss_pred ----CCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEe-ecccCe---------
Q 008467 296 ----DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE-FHSGPT--------- 361 (564)
Q Consensus 296 ----dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~~~--------- 361 (564)
++.|++|+..+............+..++|+|+|++|+.++ |+.|++||+.+++..+... .+...+
T Consensus 85 ~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~ 163 (719)
T 1z68_A 85 RYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVY 163 (719)
T ss_dssp SSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHH
T ss_pred EeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccccee
Confidence 7899999987654410011235688899999999999885 7899999998887654321 111111
Q ss_pred --------EEEEcCCCc-eEEEEeCCC----------------------------------eEEEEEcCCCcee------
Q 008467 362 --------LDVDWRNNV-SFATSSTDN----------------------------------MIYVCKIGENRPI------ 392 (564)
Q Consensus 362 --------~~~~~~~~~-~~~~~~~d~----------------------------------~i~~~~~~~~~~~------ 392 (564)
..+.|.++. .++.++.|. .|++|++..+...
T Consensus 164 ~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 243 (719)
T 1z68_A 164 EEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP 243 (719)
T ss_dssp HHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC
T ss_pred eeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc
Confidence 367887664 455554331 7889998876542
Q ss_pred --eEecCCCcceEEEEECCCCCEEEEEeCC----CcEEEEe----CCCCeeeeec----ccccccEE-----EEEEccCC
Q 008467 393 --KTFAGHQGEVNCVKWDPTGSLLASCSDD----VTAKIWN----MKQDKYVHDL----REHSKEIY-----TIRWSPTG 453 (564)
Q Consensus 393 --~~~~~h~~~i~~v~~~~~~~~las~s~d----g~i~iwd----~~~~~~~~~~----~~~~~~i~-----~i~~~p~~ 453 (564)
..+.+|...+.+++|+||++++++.... ..|.+|| ..++++...+ ..|...+. .+.|+|+|
T Consensus 244 ~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 323 (719)
T 1z68_A 244 VPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA 323 (719)
T ss_dssp CCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCC
Confidence 2245788899999999998887775433 2488899 7777765544 35666565 78899987
Q ss_pred CCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCC--C
Q 008467 454 SGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKE--G 524 (564)
Q Consensus 454 ~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d-----g~i~iw~~~~--~ 524 (564)
.. ++++++..+| .|.+||+..++ ...+..+...+..+.++ +|+.|+..+.+ +.+++|.+.. +
T Consensus 324 ~~-------l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g 394 (719)
T 1z68_A 324 IS-------YYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSY 394 (719)
T ss_dssp SC-------EEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSS
T ss_pred Ce-------EEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCC
Confidence 52 2343455565 57777877666 44566666678888888 88877766654 7888998753 4
Q ss_pred eE-EEEEe-----cCCCEEEEEEccCCCEEEEEEcC---CcEEEEEe
Q 008467 525 KI-VKTYT-----GNGGIFEVCWNKEGDKIAACFAN---HTVCVLDF 562 (564)
Q Consensus 525 ~~-~~~~~-----~~~~i~~~~w~~~g~~la~~~~~---~~v~v~~~ 562 (564)
.. ...+. ....+..++|+|+|++++..+.+ ..+.+||+
T Consensus 395 ~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~ 441 (719)
T 1z68_A 395 PPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDG 441 (719)
T ss_dssp SCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECS
T ss_pred CCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEEC
Confidence 21 23333 12357889999999988865432 24556654
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=3.2e-20 Score=184.24 Aligned_cols=249 Identities=11% Similarity=0.139 Sum_probs=170.8
Q ss_pred CCeEEEEECCCCCEEEEEeC---CCeEEEEECCCce---eEeecCCCCCEEEEEeCCCCCEEEEee-CCCcEEEEECCC-
Q 008467 276 KDVTTLDWNGEGTLLATGSY---DGQARIWSTNGDL---KCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKT- 347 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~---dg~i~vw~~~~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~~~- 347 (564)
..+..++|+|+|+ |++++. ++.|++|+..+.. ...+..+...+..++|+|+|++|++++ .++++.+|++..
T Consensus 40 ~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~ 118 (347)
T 3hfq_A 40 QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAAD 118 (347)
T ss_dssp SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTT
T ss_pred CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCC
Confidence 4467799999999 554443 6899999985432 233345677788999999999988887 679999999853
Q ss_pred cceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEe
Q 008467 348 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 427 (564)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd 427 (564)
+........ ......|. ...+...+.+++|+|+|++++++..++.|++|+
T Consensus 119 g~~~~~~~~----------------------------~~~~~~p~--~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~ 168 (347)
T 3hfq_A 119 GALTLTDTV----------------------------QHSGHGPR--PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYN 168 (347)
T ss_dssp SCEEEEEEE----------------------------ECCCCCSS--TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEE
T ss_pred CCeeeccee----------------------------ecCCCCCC--ccccCCCceEEEECCCCcEEEEeCCCCEEEEEE
Confidence 222111000 00000010 112344688999999999777777799999999
Q ss_pred CC-CCeee--eeccc-ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--CeE--EEEEeCCC------C
Q 008467 428 MK-QDKYV--HDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--GKL--LYSLNGHR------E 493 (564)
Q Consensus 428 ~~-~~~~~--~~~~~-~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~--~~~~~~h~------~ 493 (564)
+. ++... ..+.. .......++|+|+|. .+++++..++.|++|++.. ++. +..+.... .
T Consensus 169 ~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~--------~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~ 240 (347)
T 3hfq_A 169 VSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQ--------YAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHN 240 (347)
T ss_dssp ECTTSCEEEEEEEECCTTCCEEEEEECTTSS--------EEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCC
T ss_pred ECCCCcEEEeeeEEcCCCCCCceEEECCCCC--------EEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCC
Confidence 98 44332 22222 223567899999875 3556677889999999874 553 23333222 3
Q ss_pred CEEEEEEcCCCCEE-EEEeCCCcEEEEeCCC-C--eEEEEEec-CCCEEEEEEccCCCEEEEEEc-CCcEEEEEee
Q 008467 494 PVYSLAFSPTGEYL-ASGSLDKSMHIWSLKE-G--KIVKTYTG-NGGIFEVCWNKEGDKIAACFA-NHTVCVLDFR 563 (564)
Q Consensus 494 ~i~~~~~spdg~~l-asgs~dg~i~iw~~~~-~--~~~~~~~~-~~~i~~~~w~~~g~~la~~~~-~~~v~v~~~~ 563 (564)
.+..++|+|||++| ++...++.|.+|++.. + +.+..+.. ...+..++|+|||++|+++.. ++.|.||++.
T Consensus 241 ~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 241 GAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred cceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 48899999999987 5566789999999972 3 44555554 334789999999998888865 4889999653
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.88 E-value=5.9e-21 Score=203.51 Aligned_cols=268 Identities=12% Similarity=0.135 Sum_probs=193.7
Q ss_pred ccceEEEEECCCCCEEEEEEC-CCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 008467 216 TSEVCACAWSPAGSLLASGSG-DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 294 (564)
Q Consensus 216 ~~~V~~~~~sp~~~~lasgs~-D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~ 294 (564)
..+|++++|+|||+.||+++. ||+++||++.++.. .... ..+...|..++|||| +++++++
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~--------------~~lt---~~~~~~~~~~~~spd-~~l~~~~ 82 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET--------------VKLN---REPINSVLDPHYGVG-RVILVRD 82 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE--------------EECC---SSCCSEECEECTTCS-EEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc--------------Eeee---cccccccccccCCCC-eEEEEec
Confidence 457999999999999999887 99999999754321 1111 112246889999999 8888777
Q ss_pred C---CCeEEEE--EC--CCceeEeecCCCCCEEEEEeCCCCCE-EEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc
Q 008467 295 Y---DGQARIW--ST--NGDLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 366 (564)
Q Consensus 295 ~---dg~i~vw--~~--~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 366 (564)
. +...++| +. .+... .+..+. .+...+|+|+|+. +++.+.++.+.+||+.+++......... .++.|
T Consensus 83 ~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~ 157 (582)
T 3o4h_A 83 VSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVS 157 (582)
T ss_dssp CSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEE
T ss_pred cCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEE
Confidence 5 4555665 45 55444 333222 2345678888853 3333444455599999887665444332 55666
Q ss_pred CCC-ceEEEEeCC----CeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCC--cEEEEeCCCCeeeeeccc
Q 008467 367 RNN-VSFATSSTD----NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV--TAKIWNMKQDKYVHDLRE 439 (564)
Q Consensus 367 ~~~-~~~~~~~~d----~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg--~i~iwd~~~~~~~~~~~~ 439 (564)
.++ ..++.++.+ ..|++|++.++.. ..+.+|.+.+..++|+|||+.|+++..++ .|++||+.+++.. .+..
T Consensus 158 spDG~~la~~~~~~~~~~~i~~~d~~~g~~-~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~ 235 (582)
T 3o4h_A 158 DIRGDLIAGLGFFGGGRVSLFTSNLSSGGL-RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL 235 (582)
T ss_dssp EEETTEEEEEEEEETTEEEEEEEETTTCCC-EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC
T ss_pred CCCCCEEEEEEEcCCCCeEEEEEcCCCCCc-eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC
Confidence 544 445545544 6799999887664 46788889999999999999999888898 8999999988877 6677
Q ss_pred ccccEEEEE--------EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 008467 440 HSKEIYTIR--------WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS 511 (564)
Q Consensus 440 ~~~~i~~i~--------~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs 511 (564)
|...+..+. |+|+|. ++++++.|+++++|++ |+.+. .....|.+++|+ +|+++++++
T Consensus 236 ~~~~~~~~~~~~~~~~~~spdg~---------~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s 300 (582)
T 3o4h_A 236 PSKDFSSYRPTAITWLGYLPDGR---------LAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHT 300 (582)
T ss_dssp SCSHHHHHCCSEEEEEEECTTSC---------EEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEE
T ss_pred CCcChhhhhhccccceeEcCCCc---------EEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEc
Confidence 766666666 999873 7889999999999999 77654 234678999999 999999888
Q ss_pred CCC---cEEEEeCCC
Q 008467 512 LDK---SMHIWSLKE 523 (564)
Q Consensus 512 ~dg---~i~iw~~~~ 523 (564)
.+. .|.+|+..+
T Consensus 301 ~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 301 SLSTPPRIVSLPSGE 315 (582)
T ss_dssp ETTEEEEEEEETTCC
T ss_pred CCCCCCeEEEEcCCC
Confidence 774 477777654
No 156
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=6.4e-20 Score=182.04 Aligned_cols=252 Identities=14% Similarity=0.159 Sum_probs=172.0
Q ss_pred CCccceEEEEECCCCCEEEEEEC---CCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEE
Q 008467 214 GHTSEVCACAWSPAGSLLASGSG---DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 290 (564)
Q Consensus 214 ~h~~~V~~~~~sp~~~~lasgs~---D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 290 (564)
.+...+..++|+|+|+ |++++. ++.|++|++.++.. ..+.... .+...+..++|+|+|++|
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-----------~~~~~~~----~~~~~p~~~a~spdg~~l 100 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-----------HKLNTVV----APGTPPAYVAVDEARQLV 100 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-----------EEEEEEE----EESCCCSEEEEETTTTEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-----------EEeeeee----cCCCCCEEEEECCCCCEE
Confidence 3456677899999999 554443 68999999865421 0111111 123457889999999988
Q ss_pred EEEe-CCCeEEEEECC--Ccee--EeecC---------CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC-CcceeEEEe
Q 008467 291 ATGS-YDGQARIWSTN--GDLK--CTLSK---------HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK-TEEWKQQFE 355 (564)
Q Consensus 291 ~sg~-~dg~i~vw~~~--~~~~--~~~~~---------h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~-~~~~~~~~~ 355 (564)
++++ .++.+++|+.. +... ..+.. +...+.+++|+|+|+.+++...++.|.+||+. ++.+....
T Consensus 101 ~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~- 179 (347)
T 3hfq_A 101 YSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQS- 179 (347)
T ss_dssp EEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEE-
T ss_pred EEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEee-
Confidence 8888 67999999974 2222 22211 12348899999999966666778899999987 44322110
Q ss_pred ecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCC-CcceEEEEECCCCCEEEE-EeCCCcEEEEeCCC--C
Q 008467 356 FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGH-QGEVNCVKWDPTGSLLAS-CSDDVTAKIWNMKQ--D 431 (564)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h-~~~i~~v~~~~~~~~las-~s~dg~i~iwd~~~--~ 431 (564)
.+..+ ...+..++|+|||+++++ +..++.|.+|++.. +
T Consensus 180 --------------------------------------~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g 221 (347)
T 3hfq_A 180 --------------------------------------VLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG 221 (347)
T ss_dssp --------------------------------------EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred --------------------------------------eEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence 01111 124567999999996554 56789999999874 4
Q ss_pred ee--eeeccccc------ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC---CeEEEEEeCCCCCEEEEEE
Q 008467 432 KY--VHDLREHS------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL---GKLLYSLNGHREPVYSLAF 500 (564)
Q Consensus 432 ~~--~~~~~~~~------~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~---~~~~~~~~~h~~~i~~~~~ 500 (564)
.. +..+.... ..+..++|+|+|. .+++++..++.|.+|++.. .+.+..+..+...+..++|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~--------~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~ 293 (347)
T 3hfq_A 222 AFTQLGIVKTIPADYTAHNGAAAIRLSHDGH--------FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDL 293 (347)
T ss_dssp EEEEEEEEESSCTTCCSCCEEEEEEECTTSC--------EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEE
T ss_pred ceEEeeeeeecCCCCCCCCcceeEEECCCCC--------EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEE
Confidence 32 22222222 3478899999885 3456777899999999872 2556666666667899999
Q ss_pred cCCCCEEEEEeCC-CcEEEE--eCCCCeEEE
Q 008467 501 SPTGEYLASGSLD-KSMHIW--SLKEGKIVK 528 (564)
Q Consensus 501 spdg~~lasgs~d-g~i~iw--~~~~~~~~~ 528 (564)
+|||++|++++.+ +.|.+| |..+|++..
T Consensus 294 spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 294 DPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 9999999888764 899999 666777654
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=2.9e-19 Score=178.35 Aligned_cols=268 Identities=12% Similarity=0.132 Sum_probs=180.0
Q ss_pred CEEEEEeC----CCeEEEEECC---CceeEeecCCCCCEEEEEeCCCCCEEEEeeCC----CcEEEEECCC--cceeE--
Q 008467 288 TLLATGSY----DGQARIWSTN---GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD----KTAIVWDVKT--EEWKQ-- 352 (564)
Q Consensus 288 ~~l~sg~~----dg~i~vw~~~---~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~--~~~~~-- 352 (564)
.+++.|++ ++.|.+|..+ +.+......+...+..++|+|+|++|++++.+ +.+.+|++.. +.+..
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~ 93 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN 93 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence 45566654 4688998753 33332221266677889999999999999886 7999998765 44333
Q ss_pred EEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEe------cC--------CCcceEEEEECCCCCEEEEEe
Q 008467 353 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF------AG--------HQGEVNCVKWDPTGSLLASCS 418 (564)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~------~~--------h~~~i~~v~~~~~~~~las~s 418 (564)
....+......+.+.....+++...++.+.+|++.....+..+ .+ +...+.+++|+|+|++|++++
T Consensus 94 ~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 173 (361)
T 3scy_A 94 TQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADD 173 (361)
T ss_dssp EEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEE
T ss_pred EeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEe
Confidence 2222334455666633334555557899999999754332211 11 123457899999999665544
Q ss_pred -CCCcEEEEeCCCCee------e-------eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE
Q 008467 419 -DDVTAKIWNMKQDKY------V-------HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL 484 (564)
Q Consensus 419 -~dg~i~iwd~~~~~~------~-------~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 484 (564)
.++.|++|++..... + .....+......++|+|++. .+++++..++.|.+|++.+++.
T Consensus 174 ~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~--------~l~v~~~~~~~v~v~~~~~g~~ 245 (361)
T 3scy_A 174 LGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK--------FAYLINEIGGTVIAFRYADGML 245 (361)
T ss_dssp TTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS--------EEEEEETTTCEEEEEEEETTEE
T ss_pred CCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCC--------EEEEEcCCCCeEEEEEecCCce
Confidence 588999998765431 1 11123345578899999885 2344444799999999987754
Q ss_pred --EEEEe---CCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEeCC--CCe--EEEEEecCCCEEEEEEccCCCEEEEEE-
Q 008467 485 --LYSLN---GHREPVYSLAFSPTGEYLASGSL--DKSMHIWSLK--EGK--IVKTYTGNGGIFEVCWNKEGDKIAACF- 552 (564)
Q Consensus 485 --~~~~~---~h~~~i~~~~~spdg~~lasgs~--dg~i~iw~~~--~~~--~~~~~~~~~~i~~~~w~~~g~~la~~~- 552 (564)
+..+. .+...+..++|||||++|+++.. ++.|.+|++. +++ .+..+.....+..++|+|+|++|+++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~ 325 (361)
T 3scy_A 246 DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACR 325 (361)
T ss_dssp EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEEC
Confidence 33332 23345789999999999976665 4899999985 555 444444444578999999999988887
Q ss_pred cCCcEEEEEee
Q 008467 553 ANHTVCVLDFR 563 (564)
Q Consensus 553 ~~~~v~v~~~~ 563 (564)
.++.|.||.+.
T Consensus 326 ~~~~v~v~~~d 336 (361)
T 3scy_A 326 DTNVIQIFERD 336 (361)
T ss_dssp TTTEEEEEEEC
T ss_pred CCCCEEEEEEE
Confidence 57889997654
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.87 E-value=7.4e-20 Score=181.28 Aligned_cols=275 Identities=11% Similarity=0.059 Sum_probs=188.4
Q ss_pred EEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEE-EEeCCCeE
Q 008467 221 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA-TGSYDGQA 299 (564)
Q Consensus 221 ~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~-sg~~dg~i 299 (564)
.+++++++.++++++.++.|++||+.+++.. ..... .....+..++|+|+|++++ ++..++.|
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-------------~~~~~---~~~~~~~~~~~s~dg~~~~v~~~~~~~i 67 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVY-------------KSCVM---PDKFGPGTAMMAPDNRTAYVLNNHYGDI 67 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEE-------------EEEEC---SSCCSSCEEEECTTSSEEEEEETTTTEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEE-------------EEEec---CCCCCCceeEECCCCCEEEEEeCCCCcE
Confidence 4568889999999999999999998765321 11111 1112467899999998654 55578999
Q ss_pred EEEECCC-ceeEeecCCC------CCEEEEEeCCCCCEEEEeeCC------------CcEEEEECCCcceeE---EEeec
Q 008467 300 RIWSTNG-DLKCTLSKHK------GPIFSLKWNKKGDYLLTGSCD------------KTAIVWDVKTEEWKQ---QFEFH 357 (564)
Q Consensus 300 ~vw~~~~-~~~~~~~~h~------~~V~~l~~~~~~~~l~s~s~D------------~~v~iwd~~~~~~~~---~~~~~ 357 (564)
.+|+... .....+..+. ..+.+++|+|+|++|++++.+ +.|.+||+.+++... .+...
T Consensus 68 ~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 147 (349)
T 1jmx_B 68 YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP 147 (349)
T ss_dssp EEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC
T ss_pred EEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC
Confidence 9999864 4444443222 236789999999999998866 899999998854332 33222
Q ss_pred ccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCC-c-----------------------ceEEEEECCCCCE
Q 008467 358 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-G-----------------------EVNCVKWDPTGSL 413 (564)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~-----------------------~i~~v~~~~~~~~ 413 (564)
..+..+.|.++..++.++. .|++|+..+++.+..+..+. . ...++++++++..
T Consensus 148 -~~~~~~~~s~dg~l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 224 (349)
T 1jmx_B 148 -RQVYLMRAADDGSLYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ 224 (349)
T ss_dssp -SSCCCEEECTTSCEEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-----
T ss_pred -CcccceeECCCCcEEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcC
Confidence 2355666765544444433 49999998887776665332 0 2345667665421
Q ss_pred -----------EEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEcc-CCCCCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 008467 414 -----------LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVEL 481 (564)
Q Consensus 414 -----------las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 481 (564)
+.....++.+++|+. ..+...+..++|+| ++. +++++ ++.|.+||+.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~sp~dg~---------~l~~~--~~~v~~~d~~~ 284 (349)
T 1jmx_B 225 DPATADLLYGYLSVDLKTGKTHTQEF---------ADLTELYFTGLRSPKDPN---------QIYGV--LNRLAKYDLKQ 284 (349)
T ss_dssp --CCCEEEEEEEEEETTTCCEEEEEE---------EECSSCEEEEEECSSCTT---------EEEEE--ESEEEEEETTT
T ss_pred CccccccceeEEEEeccCCcEEeccc---------ccCCCcceeeEecCCCCC---------EEEEE--cCeEEEEECcc
Confidence 112233445555543 23456678999999 875 45555 88999999999
Q ss_pred CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCC
Q 008467 482 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG 535 (564)
Q Consensus 482 ~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~ 535 (564)
++.+..+... ..+.+++|+|||++|++++.++.|.+||+.+++.+..+...++
T Consensus 285 ~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~~~ 337 (349)
T 1jmx_B 285 RKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG 337 (349)
T ss_dssp TEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred CeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecCCC
Confidence 9988777643 3467999999999998888899999999999999888765443
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.86 E-value=1e-19 Score=180.24 Aligned_cols=270 Identities=13% Similarity=0.073 Sum_probs=184.8
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEECCC-ceeEeecCCC-CCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCcceeEEEee
Q 008467 280 TLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHK-GPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEF 356 (564)
Q Consensus 280 ~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~-~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~ 356 (564)
.+++++++.++++++.++.|++||... .....+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++....+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 346788899999999999999999764 4555554433 2567899999998764 556789999999999887776654
Q ss_pred ccc------CeEEEEcCCCc-eEEEEeC------------CCeEEEEEcCCCc---eeeEecCCCcceEEEEECCCCCEE
Q 008467 357 HSG------PTLDVDWRNNV-SFATSST------------DNMIYVCKIGENR---PIKTFAGHQGEVNCVKWDPTGSLL 414 (564)
Q Consensus 357 ~~~------~~~~~~~~~~~-~~~~~~~------------d~~i~~~~~~~~~---~~~~~~~h~~~i~~v~~~~~~~~l 414 (564)
... .+..+.|.++. .+++++. ++.|++|++.+++ .+..+..+ ..+.+++|+|+|+ +
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-RQVYLMRAADDGS-L 161 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-SSCCCEEECTTSC-E
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC-CcccceeECCCCc-E
Confidence 321 24556665443 4444443 4899999997743 33444433 3588999999999 5
Q ss_pred EEEeCCCcEEEEeCCCCeeeeecccccc------------------------cEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008467 415 ASCSDDVTAKIWNMKQDKYVHDLREHSK------------------------EIYTIRWSPTGSGTNNPNQQLILASASF 470 (564)
Q Consensus 415 as~s~dg~i~iwd~~~~~~~~~~~~~~~------------------------~i~~i~~~p~~~~~~~~~~~~~l~s~s~ 470 (564)
+.++. .|.+||..+++.+..+..+.. ....+.+++++...... ...
T Consensus 162 ~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~ 231 (349)
T 1jmx_B 162 YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT--------ADL 231 (349)
T ss_dssp EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC--------CEE
T ss_pred EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc--------ccc
Confidence 55543 499999998887766543320 22334454433210000 000
Q ss_pred CCeEEEEeCCCCeE-EEEEeCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEE
Q 008467 471 DSTVKLWDVELGKL-LYSLNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKI 548 (564)
Q Consensus 471 dg~i~iwd~~~~~~-~~~~~~h~~~i~~~~~sp-dg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~l 548 (564)
...+..+|..+++. ...+..+...+..++|+| ||++|+++ ++.|.+||+.+++.++.+.....+..++|+|+|++|
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l 309 (349)
T 1jmx_B 232 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKL 309 (349)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCE
T ss_pred ceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEE
Confidence 01122244444432 122333566789999999 99999988 889999999999998888776678899999999999
Q ss_pred EEEEcCCcEEEEEee
Q 008467 549 AACFANHTVCVLDFR 563 (564)
Q Consensus 549 a~~~~~~~v~v~~~~ 563 (564)
+++..++.|.|||.+
T Consensus 310 ~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 310 YLGGTFNDLAVFNPD 324 (349)
T ss_dssp EEESBSSEEEEEETT
T ss_pred EEecCCCeEEEEecc
Confidence 988888999999974
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.86 E-value=3.2e-20 Score=203.30 Aligned_cols=279 Identities=12% Similarity=0.096 Sum_probs=181.4
Q ss_pred ceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccc-cCCCCeEEEEECCCCCEEEEEeCC
Q 008467 218 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN-EKSKDVTTLDWNGEGTLLATGSYD 296 (564)
Q Consensus 218 ~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~V~~l~~s~~g~~l~sg~~d 296 (564)
....++|+|+|.+|+++ |+.|++|++.++... ....++.. ........++|||||++|+.++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~ 82 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS-------------VFLENSTFDEFGHSINDYSISPDGQFILLEYNY 82 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEE-------------EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceE-------------EEEechhhhhhcccccceEECCCCCEEEEEECC
Confidence 35578999999999986 999999999876421 01111111 111123458999999999998876
Q ss_pred ---------CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEe-ecccCeEEEEc
Q 008467 297 ---------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE-FHSGPTLDVDW 366 (564)
Q Consensus 297 ---------g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~ 366 (564)
+.+.+||..+.....+..|.+.+...+|||+|+.|+.+ .|+.|.+||+.++...+... .+...+
T Consensus 83 ~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~----- 156 (740)
T 4a5s_A 83 VKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDII----- 156 (740)
T ss_dssp EECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTE-----
T ss_pred eeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccce-----
Confidence 56679999877666777888899999999999999887 57899999998876443211 111001
Q ss_pred CCCceEEEEeCCCeEEEEEcCCCceeeEecCCC---------cceEEEEECCCCCEEEEEeCC-----------------
Q 008467 367 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ---------GEVNCVKWDPTGSLLASCSDD----------------- 420 (564)
Q Consensus 367 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~---------~~i~~v~~~~~~~~las~s~d----------------- 420 (564)
+.|+. +....+.|||||+.||.++.|
T Consensus 157 ----------------------------~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~ 208 (740)
T 4a5s_A 157 ----------------------------YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESL 208 (740)
T ss_dssp ----------------------------EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTC
T ss_pred ----------------------------ecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCC
Confidence 11111 112235566666655554322
Q ss_pred -------------------CcEEEEeCCC---Ce--eeeecc------cccccEEEEEEccCCCCCCCCCCcEEEEEEe-
Q 008467 421 -------------------VTAKIWNMKQ---DK--YVHDLR------EHSKEIYTIRWSPTGSGTNNPNQQLILASAS- 469 (564)
Q Consensus 421 -------------------g~i~iwd~~~---~~--~~~~~~------~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s- 469 (564)
.+|++||+.+ +. ....+. .|...+..+.|+|+|. .++....
T Consensus 209 ~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~--------~~~~~~~r 280 (740)
T 4a5s_A 209 QYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQER--------ISLQWLRR 280 (740)
T ss_dssp SSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTE--------EEEEEEES
T ss_pred CCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCe--------EEEEEeCC
Confidence 2588899988 62 122333 3777899999999874 2222222
Q ss_pred --CCCeEEEEeCCCCe----EE--EEE--eCCCCCEE-----EEEEcCCCCEEE-EEeC-C--CcEEEEeCCCCeEEEEE
Q 008467 470 --FDSTVKLWDVELGK----LL--YSL--NGHREPVY-----SLAFSPTGEYLA-SGSL-D--KSMHIWSLKEGKIVKTY 530 (564)
Q Consensus 470 --~dg~i~iwd~~~~~----~~--~~~--~~h~~~i~-----~~~~spdg~~la-sgs~-d--g~i~iw~~~~~~~~~~~ 530 (564)
.+..|++||+.+++ +. ..+ .+|...|. .++|||||+.|+ ..+. + ..|++|++.+++.....
T Consensus 281 ~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT 360 (740)
T 4a5s_A 281 IQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFIT 360 (740)
T ss_dssp STTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESC
T ss_pred CCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecc
Confidence 23479999998876 32 122 44554444 789999999887 6664 3 46888898877665544
Q ss_pred ecCCCEEEEEEccCCCEEEEEEcC
Q 008467 531 TGNGGIFEVCWNKEGDKIAACFAN 554 (564)
Q Consensus 531 ~~~~~i~~~~w~~~g~~la~~~~~ 554 (564)
.+.-.+..+.+ +||+.|+..+..
T Consensus 361 ~g~~~v~~~~~-~d~~~i~f~~~~ 383 (740)
T 4a5s_A 361 KGTWEVIGIEA-LTSDYLYYISNE 383 (740)
T ss_dssp CSSSCEEEEEE-ECSSEEEEEESC
T ss_pred cCCEEEEEEEE-EeCCEEEEEEec
Confidence 44445655442 447777765543
No 161
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.85 E-value=1.9e-19 Score=181.41 Aligned_cols=273 Identities=12% Similarity=0.105 Sum_probs=184.3
Q ss_pred EEECCCCCEEEEEeC-CC--eEEEEECCCcee-EeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee
Q 008467 281 LDWNGEGTLLATGSY-DG--QARIWSTNGDLK-CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 356 (564)
Q Consensus 281 l~~s~~g~~l~sg~~-dg--~i~vw~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 356 (564)
.+|||||++|+.++. +| .|.+|+..+... .....+...+.++.|+|+|++|+.++.++.+++||+.+++....+..
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~ 120 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV 120 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence 689999999999887 67 478888765443 44445555555778999999999999999999999999887766655
Q ss_pred cccCeEEEEc--CCCc-eEEE----------------------EeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-C
Q 008467 357 HSGPTLDVDW--RNNV-SFAT----------------------SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-T 410 (564)
Q Consensus 357 ~~~~~~~~~~--~~~~-~~~~----------------------~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~ 410 (564)
+...+....| ..+. .++. ...+..|++|++.+++.. .+..+...+..++|+| |
T Consensus 121 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~d 199 (388)
T 3pe7_A 121 PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYD 199 (388)
T ss_dssp CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTE
T ss_pred hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCC
Confidence 4443322333 2332 2321 124467999999877643 4445667789999999 9
Q ss_pred CCEEEEEeCC------CcEEEEeCCCCeeeeeccccc--ccEEEEEEccCCCCCCCCCCcEEEEEEeC-CC---eEEEEe
Q 008467 411 GSLLASCSDD------VTAKIWNMKQDKYVHDLREHS--KEIYTIRWSPTGSGTNNPNQQLILASASF-DS---TVKLWD 478 (564)
Q Consensus 411 ~~~las~s~d------g~i~iwd~~~~~~~~~~~~~~--~~i~~i~~~p~~~~~~~~~~~~~l~s~s~-dg---~i~iwd 478 (564)
|+.|+.++.+ ..|.++|..++.. ..+..+. ..+..+.|+|+|.. ++..+.. .+ .|.+||
T Consensus 200 g~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~--------l~~~~~~~~~~~~~l~~~d 270 (388)
T 3pe7_A 200 DSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSA--------LVYVSYLKGSPDRFIYSAD 270 (388)
T ss_dssp EEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSC--------EEEEEEETTCCCEEEEEEC
T ss_pred CCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCE--------EEEEecCCCCCcceEEEEe
Confidence 9999887764 3677788765543 3344443 35778899999862 3232322 22 399999
Q ss_pred CCCCeE--EEEEeCCCCC---EEEEEEcCCCCEEEEE---------eCCCcEEEEeCCCCeEEEEEecCC----------
Q 008467 479 VELGKL--LYSLNGHREP---VYSLAFSPTGEYLASG---------SLDKSMHIWSLKEGKIVKTYTGNG---------- 534 (564)
Q Consensus 479 ~~~~~~--~~~~~~h~~~---i~~~~~spdg~~lasg---------s~dg~i~iw~~~~~~~~~~~~~~~---------- 534 (564)
+.+++. +..+.++... ...++|||||++|+.. ..+..|++||+.++++........
T Consensus 271 ~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 350 (388)
T 3pe7_A 271 PETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQ 350 (388)
T ss_dssp TTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSS
T ss_pred cCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccc
Confidence 998874 3333331100 1123799999988854 456789999999987654443333
Q ss_pred -CEEEEEEccCCCEEEEEEc-CCcEEEEEee
Q 008467 535 -GIFEVCWNKEGDKIAACFA-NHTVCVLDFR 563 (564)
Q Consensus 535 -~i~~~~w~~~g~~la~~~~-~~~v~v~~~~ 563 (564)
.+..++|+|||+.|+.++. ++...||.+.
T Consensus 351 ~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 351 VTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp TTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 3678999999999887754 6666666543
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=5.8e-21 Score=208.89 Aligned_cols=271 Identities=14% Similarity=0.125 Sum_probs=189.2
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCce-eEeecCCCC---CEEEEEeCCCCCEEEEeeC---------CCcEEEEECC
Q 008467 280 TLDWNGEGTLLATGSYDGQARIWSTNGDL-KCTLSKHKG---PIFSLKWNKKGDYLLTGSC---------DKTAIVWDVK 346 (564)
Q Consensus 280 ~l~~s~~g~~l~sg~~dg~i~vw~~~~~~-~~~~~~h~~---~V~~l~~~~~~~~l~s~s~---------D~~v~iwd~~ 346 (564)
.++|+|+|+++++ +.||.|++|+..+.. ...+..|.. .|.+++|||+|++|++++. |++|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6789999965554 469999999987544 344444433 4889999999999998876 7899999999
Q ss_pred CcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEe-cCCCcce-----------------EEEEEC
Q 008467 347 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF-AGHQGEV-----------------NCVKWD 408 (564)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-~~h~~~i-----------------~~v~~~ 408 (564)
+++....... ...+..+.|.++...++...++.|++|++..+...... .++...| .+++|+
T Consensus 99 ~g~~~~~~~l-~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wS 177 (719)
T 1z68_A 99 NGEFVRGNEL-PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWS 177 (719)
T ss_dssp TTEECCSSCC-CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEEC
T ss_pred CCccccceec-CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEEC
Confidence 8876211111 23466788877665444445889999999776654322 2332222 489999
Q ss_pred CCCCEEEEEeCCC----------------------------------cEEEEeCCCCeee--------eecccccccEEE
Q 008467 409 PTGSLLASCSDDV----------------------------------TAKIWNMKQDKYV--------HDLREHSKEIYT 446 (564)
Q Consensus 409 ~~~~~las~s~dg----------------------------------~i~iwd~~~~~~~--------~~~~~~~~~i~~ 446 (564)
|||+.||+++.|. .|++||+.+++.. ..+..|...+..
T Consensus 178 PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (719)
T 1z68_A 178 PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSW 257 (719)
T ss_dssp TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEE
T ss_pred CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEE
Confidence 9999999988652 7889999887642 223467788999
Q ss_pred EEEccCCCCCCCCCCcEEEEEEeC--C--CeEEEEe----CCCCeEEEEE----eCCCCCEE-----EEEEcCCCCEEEE
Q 008467 447 IRWSPTGSGTNNPNQQLILASASF--D--STVKLWD----VELGKLLYSL----NGHREPVY-----SLAFSPTGEYLAS 509 (564)
Q Consensus 447 i~~~p~~~~~~~~~~~~~l~s~s~--d--g~i~iwd----~~~~~~~~~~----~~h~~~i~-----~~~~spdg~~las 509 (564)
++|+|++. ++++... + ..|.+|| +.++++...+ .+|...+. .++|||||+.|+.
T Consensus 258 ~~~SpD~~---------~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 328 (719)
T 1z68_A 258 LTWVTDER---------VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYK 328 (719)
T ss_dssp EEESSSSE---------EEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEE
T ss_pred eEEeCCCe---------EEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEE
Confidence 99999853 4555332 2 2488899 8777655444 36666666 8899999996654
Q ss_pred --EeCCC--cEEEEeCCCCeEEEEEe-cCCCEEEEEEccCCCEEEEEEcC-----CcEEEEEee
Q 008467 510 --GSLDK--SMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEGDKIAACFAN-----HTVCVLDFR 563 (564)
Q Consensus 510 --gs~dg--~i~iw~~~~~~~~~~~~-~~~~i~~~~w~~~g~~la~~~~~-----~~v~v~~~~ 563 (564)
...+| .|.+|++.+++. ..+. +...+..+.|. +|+.|++.+.+ +...+|.+.
T Consensus 329 ~~~~~~g~~~l~~~~~~~~~~-~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 329 IFSDKDGYKHIHYIKDTVENA-IQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp EEECTTSCEEEEEESSCSTTC-EECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred EEEccCCceEEEEEECCCCce-EecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 44555 577778877763 3333 33457777777 88888877765 677888664
No 163
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=5.4e-18 Score=169.10 Aligned_cols=256 Identities=12% Similarity=0.078 Sum_probs=172.4
Q ss_pred CCeEEEEECCCCCEEEEEeCC----CeEEEEECCC---cee--EeecCCCCCEEEEEeCCCCCEEEEee-CCCcEEEEEC
Q 008467 276 KDVTTLDWNGEGTLLATGSYD----GQARIWSTNG---DLK--CTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDV 345 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~d----g~i~vw~~~~---~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~ 345 (564)
..+..++|+|+|++|++++.+ |.+.+|+.+. .+. .....+......+++ ++++|++++ .++++.+|++
T Consensus 50 ~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~ 127 (361)
T 3scy_A 50 ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPI 127 (361)
T ss_dssp SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEB
T ss_pred CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEe
Confidence 456779999999999999886 7999998643 322 233445556777888 788777666 6789999999
Q ss_pred CCcceeEEE---eec-----------ccCeEEEEcCCCc--eEEEEeCCCeEEEEEcCCCce------e-------eEec
Q 008467 346 KTEEWKQQF---EFH-----------SGPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRP------I-------KTFA 396 (564)
Q Consensus 346 ~~~~~~~~~---~~~-----------~~~~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~~------~-------~~~~ 396 (564)
........+ ..+ ...+..+.|.++. .+++...++.|++|++..... + ....
T Consensus 128 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~ 207 (361)
T 3scy_A 128 GQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV 207 (361)
T ss_dssp CTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC
T ss_pred CCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec
Confidence 754322111 111 1123557776554 445556688999998875431 1 1122
Q ss_pred CCCcceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCee--eeec---ccccccEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008467 397 GHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKY--VHDL---REHSKEIYTIRWSPTGSGTNNPNQQLILASASF 470 (564)
Q Consensus 397 ~h~~~i~~v~~~~~~~~las~s-~dg~i~iwd~~~~~~--~~~~---~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~ 470 (564)
.+...+..++|+|+|+++++++ .++.|.+|++.++.. +..+ ..+......++|+|++. .++++...
T Consensus 208 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~--------~l~v~~~~ 279 (361)
T 3scy_A 208 APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGK--------YLYASNRL 279 (361)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSS--------EEEEEECS
T ss_pred CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCC--------EEEEECCC
Confidence 3345678999999999877766 689999999986654 2222 22334568999999885 23344444
Q ss_pred -CCeEEEEeCC--CCe--EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEE--eCCCCeEEEEEe--cCCCEEEEE
Q 008467 471 -DSTVKLWDVE--LGK--LLYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIW--SLKEGKIVKTYT--GNGGIFEVC 540 (564)
Q Consensus 471 -dg~i~iwd~~--~~~--~~~~~~~h~~~i~~~~~spdg~~lasgs-~dg~i~iw--~~~~~~~~~~~~--~~~~i~~~~ 540 (564)
++.|.+|++. +++ .+..+.. ...+.+++|+|||++|++++ .++.|.+| |..+|++..... ....+.+++
T Consensus 280 ~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~ 358 (361)
T 3scy_A 280 KADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLK 358 (361)
T ss_dssp SSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEE
T ss_pred CCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEE
Confidence 5899999985 454 4444544 45678999999999998887 67899995 555777654421 224577888
Q ss_pred Ec
Q 008467 541 WN 542 (564)
Q Consensus 541 w~ 542 (564)
|.
T Consensus 359 ~~ 360 (361)
T 3scy_A 359 FV 360 (361)
T ss_dssp EE
T ss_pred Ec
Confidence 75
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=2.2e-17 Score=165.06 Aligned_cols=264 Identities=14% Similarity=0.133 Sum_probs=176.9
Q ss_pred EEEEeCC--CeEEEEEC--C-CceeEe--e-cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC-CcceeEEEeec-cc
Q 008467 290 LATGSYD--GQARIWST--N-GDLKCT--L-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK-TEEWKQQFEFH-SG 359 (564)
Q Consensus 290 l~sg~~d--g~i~vw~~--~-~~~~~~--~-~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~-~~~~~~~~~~~-~~ 359 (564)
+++|++. +.|.+|+. . +.+... . ......+..++|+|+|++|++++.+ +|.+||+. ++++....... .+
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g 83 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGG 83 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCS
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCC
Confidence 4555553 45777653 2 333211 1 1233467789999999999999888 99999997 77665433321 12
Q ss_pred CeEEEEcCCCce--EE-EEe-------------CCCeEEEEEcCC-CceeeEec----CCCcceEEEEECCCCCEEEEEe
Q 008467 360 PTLDVDWRNNVS--FA-TSS-------------TDNMIYVCKIGE-NRPIKTFA----GHQGEVNCVKWDPTGSLLASCS 418 (564)
Q Consensus 360 ~~~~~~~~~~~~--~~-~~~-------------~d~~i~~~~~~~-~~~~~~~~----~h~~~i~~v~~~~~~~~las~s 418 (564)
....+.|.++.. ++ ++. .++.+.+|++.. +.....+. .+...+.+++|+|+|++|+++.
T Consensus 84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 163 (365)
T 1jof_A 84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD 163 (365)
T ss_dssp SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence 233466666554 33 332 688999999974 44333332 2456789999999999887765
Q ss_pred C-CCcEEEEeCC-CCeee--eecc--cccccEEEEEEccCCCCCCCCCCcEEEEEEe-CCCeEEEEeCC--CCeEEE---
Q 008467 419 D-DVTAKIWNMK-QDKYV--HDLR--EHSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVE--LGKLLY--- 486 (564)
Q Consensus 419 ~-dg~i~iwd~~-~~~~~--~~~~--~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~--~~~~~~--- 486 (564)
. ++.|++|++. +++.. ..+. .|...+..++|+|+|. +|++++ .+++|.+|++. +++...
T Consensus 164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~---------~l~v~~~~~~~v~v~~~~~~~g~~~~~~~ 234 (365)
T 1jof_A 164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGN---------YLYALMEAGNRICEYVIDPATHMPVYTHH 234 (365)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSS---------EEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCC---------EEEEEECCCCeEEEEEEeCCCCcEEEccc
Confidence 4 6899999998 66542 2333 2356689999999885 455544 57899999765 565432
Q ss_pred EEe-------CCCC------CEEEEE-EcCCCCEEEEEeCC-C-----cEEEEeCC-CCeEEEE---Eec-CCCEEEEEE
Q 008467 487 SLN-------GHRE------PVYSLA-FSPTGEYLASGSLD-K-----SMHIWSLK-EGKIVKT---YTG-NGGIFEVCW 541 (564)
Q Consensus 487 ~~~-------~h~~------~i~~~~-~spdg~~lasgs~d-g-----~i~iw~~~-~~~~~~~---~~~-~~~i~~~~w 541 (564)
.+. +|.. .+..++ |||||++|++++.+ . .|.+|++. +|++... ... ...+..++|
T Consensus 235 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~ 314 (365)
T 1jof_A 235 SFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAV 314 (365)
T ss_dssp EEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCE
T ss_pred eEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCccccee
Confidence 222 1222 488999 99999998876543 2 89999996 6776542 222 234667899
Q ss_pred cc---CCCEEEEEEc-CCcEEEEEee
Q 008467 542 NK---EGDKIAACFA-NHTVCVLDFR 563 (564)
Q Consensus 542 ~~---~g~~la~~~~-~~~v~v~~~~ 563 (564)
+| ||++|+++.. ++.|.||++.
T Consensus 315 sp~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 315 SPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp EECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred cCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 99 8999998876 4899999874
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=5e-18 Score=169.69 Aligned_cols=246 Identities=11% Similarity=0.083 Sum_probs=165.9
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEeCC-CCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE--EEEE
Q 008467 217 SEVCACAWSPAGSLLASGSGDSTARIWTIA-DGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL--LATG 293 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~--l~sg 293 (564)
..+..++|+|+|++|++++.+ .+.+|++. ++.. ........ ...+.+++|+|+|++ ++++
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~-----------~~~~~~~~-----~g~~~~~~~spdg~~l~~~~~ 102 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI-----------VHEASHPI-----GGHPRANDADTNTRAIFLLAA 102 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE-----------EEEEEEEC-----CSSGGGGCTTSCCEEEEEEEC
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE-----------EEeeEeec-----CCCCccEEECCCCCEEEEEEe
Confidence 457789999999999998888 99999985 4321 00111100 012445789999994 5555
Q ss_pred e-------------CCCeEEEEECC--CceeEeec----CCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECC-CcceeE
Q 008467 294 S-------------YDGQARIWSTN--GDLKCTLS----KHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVK-TEEWKQ 352 (564)
Q Consensus 294 ~-------------~dg~i~vw~~~--~~~~~~~~----~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~-~~~~~~ 352 (564)
. .+|.+++|+.. +.+...+. .+...+.+++|+|+|++|++++. +++|++||+. +++...
T Consensus 103 ~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~ 182 (365)
T 1jof_A 103 KQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL 182 (365)
T ss_dssp SSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred cCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEE
Confidence 3 68999999974 44443332 25567899999999998887654 6799999987 554321
Q ss_pred EEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CCcEEEEeCC--
Q 008467 353 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMK-- 429 (564)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg~i~iwd~~-- 429 (564)
... ..+..|...+..++|+|+|+++++++. ++.|.+|++.
T Consensus 183 ~~~-------------------------------------~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~ 225 (365)
T 1jof_A 183 VGS-------------------------------------VDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp EEE-------------------------------------EECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred eee-------------------------------------EecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC
Confidence 100 001113445778999999999887765 7899999765
Q ss_pred CCeee------eecc----cccc------cEEEEE-EccCCCCCCCCCCcEEEEEEeC-CC-----eEEEEeCC-CCeEE
Q 008467 430 QDKYV------HDLR----EHSK------EIYTIR-WSPTGSGTNNPNQQLILASASF-DS-----TVKLWDVE-LGKLL 485 (564)
Q Consensus 430 ~~~~~------~~~~----~~~~------~i~~i~-~~p~~~~~~~~~~~~~l~s~s~-dg-----~i~iwd~~-~~~~~ 485 (564)
+++.. ..+. +|.. .+..++ |+|+|. +|++++. ++ +|++|++. +++..
T Consensus 226 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~---------~l~v~~~~~~~~~~~~i~v~~~~~~g~~~ 296 (365)
T 1jof_A 226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK---------YMFASSRANKFELQGYIAGFKLRDCGSIE 296 (365)
T ss_dssp TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS---------EEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred CCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCC---------EEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence 44432 1221 1222 478899 999885 3444432 23 89999986 56654
Q ss_pred E---EEeCCCCCEEEEEEcC---CCCEEEEEeCC-CcEEEEeCCCCe
Q 008467 486 Y---SLNGHREPVYSLAFSP---TGEYLASGSLD-KSMHIWSLKEGK 525 (564)
Q Consensus 486 ~---~~~~h~~~i~~~~~sp---dg~~lasgs~d-g~i~iw~~~~~~ 525 (564)
. ....+...+..++|+| ||++|++++.+ +.|.+|++....
T Consensus 297 ~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 297 KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred EeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 3 2333444567899999 89999998864 899999987664
No 166
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.81 E-value=1.6e-18 Score=174.85 Aligned_cols=271 Identities=12% Similarity=0.059 Sum_probs=179.8
Q ss_pred eEEEEECCCCCEEEEEeCC---CeEEEEECCCceeEeecCCCCCE-EEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE
Q 008467 278 VTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPI-FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 353 (564)
Q Consensus 278 V~~l~~s~~g~~l~sg~~d---g~i~vw~~~~~~~~~~~~h~~~V-~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 353 (564)
+..++|||||++|+..... ..|.+|+..+.....+..+...+ ..+.|+|+|++|+.++.++.|.+||+.+++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 5567899999998877543 46888888765555554444333 3378999999999999999999999998876655
Q ss_pred EeecccCeEE-------------------EEcCCCce-EEEE-----eCCCeEEEEEcCCCceeeEecCCCcceEEEEEC
Q 008467 354 FEFHSGPTLD-------------------VDWRNNVS-FATS-----STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD 408 (564)
Q Consensus 354 ~~~~~~~~~~-------------------~~~~~~~~-~~~~-----~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~ 408 (564)
+..+.....+ ..|.++.. ++.. ..+..|++|++..++..... .+...+..+.|+
T Consensus 118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~s 196 (396)
T 3c5m_A 118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYR 196 (396)
T ss_dssp EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEE
T ss_pred EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceEC
Confidence 5433321111 12222211 1111 35567899999877654443 466778999999
Q ss_pred C-CCCEEEEEeCC------CcEEEEeCCCCeeeeecccc--cccEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeE
Q 008467 409 P-TGSLLASCSDD------VTAKIWNMKQDKYVHDLREH--SKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STV 474 (564)
Q Consensus 409 ~-~~~~las~s~d------g~i~iwd~~~~~~~~~~~~~--~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-----g~i 474 (564)
| +++.|+.++.+ ..|.+||+.++... .+..+ ...+..+.|+|++. .|+.++.+ +.|
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~---------~l~~~~~~~~~~~~~l 266 (396)
T 3c5m_A 197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGS---------AMAYVSYFKGQTDRVI 266 (396)
T ss_dssp TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSS---------CEEEEEEETTTCCEEE
T ss_pred CCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCC---------EEEEEecCCCCccceE
Confidence 9 88877776654 35888888765433 23333 23578899999885 23334332 459
Q ss_pred EEEeCCCCeEEEEEeCCCCCEEEEEEcC-CCCEEEEEe----------------CCCcEEEEeCCCCeEEEEEecCC---
Q 008467 475 KLWDVELGKLLYSLNGHREPVYSLAFSP-TGEYLASGS----------------LDKSMHIWSLKEGKIVKTYTGNG--- 534 (564)
Q Consensus 475 ~iwd~~~~~~~~~~~~h~~~i~~~~~sp-dg~~lasgs----------------~dg~i~iw~~~~~~~~~~~~~~~--- 534 (564)
++||+.+++....... . ... ++|+| ||++|++++ .++.|++||+.++++........
T Consensus 267 ~~~d~~~g~~~~l~~~-~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 343 (396)
T 3c5m_A 267 YKANPETLENEEVMVM-P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWD 343 (396)
T ss_dssp EEECTTTCCEEEEEEC-C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCC
T ss_pred EEEECCCCCeEEeeeC-C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccc
Confidence 9999988865432221 1 233 89999 999998765 34789999999887544333332
Q ss_pred --------CEEEEEEccCCCEEEEEEc-CCcEEEEEe
Q 008467 535 --------GIFEVCWNKEGDKIAACFA-NHTVCVLDF 562 (564)
Q Consensus 535 --------~i~~~~w~~~g~~la~~~~-~~~v~v~~~ 562 (564)
.+..++|+|||+.|++++. ++...||-+
T Consensus 344 ~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 344 VLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp CBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred cccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 1567899999999987765 455555544
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.81 E-value=1.6e-17 Score=165.49 Aligned_cols=280 Identities=9% Similarity=0.099 Sum_probs=188.7
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC----------CCeEEEEECC
Q 008467 236 GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY----------DGQARIWSTN 305 (564)
Q Consensus 236 ~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~----------dg~i~vw~~~ 305 (564)
.|+.+.+||..+++.. ..... ...+ .++|+|||++++++.. ++.|.+||..
T Consensus 29 ~d~~v~v~D~~t~~~~-------------~~i~~----g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~ 89 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFL-------------GMVPT----AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD 89 (361)
T ss_dssp GGCEEEEEETTTCCEE-------------EEEEC----CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred ccCeEEEEECCCCeEE-------------EEecC----CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc
Confidence 4789999998765421 11111 1122 7899999999998863 5789999975
Q ss_pred C-ceeEeecC------CCCCEEEEEeCCCCCEEEEeeC--CCcEEEEECCCcceeEE-EeecccCeEEEEcCCCceEEEE
Q 008467 306 G-DLKCTLSK------HKGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQ-FEFHSGPTLDVDWRNNVSFATS 375 (564)
Q Consensus 306 ~-~~~~~~~~------h~~~V~~l~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 375 (564)
. +....+.. +......++++|+|++|+++.. +++|.+||+.+++.+.. +.........+.......+++.
T Consensus 90 t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 90 KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEE
T ss_pred CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEE
Confidence 3 44444432 2234567899999999998864 68999999999887765 4322111112222334678888
Q ss_pred eCCCeEEEEEcCC-Ccee------eEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee--eeeccc------c
Q 008467 376 STDNMIYVCKIGE-NRPI------KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDLRE------H 440 (564)
Q Consensus 376 ~~d~~i~~~~~~~-~~~~------~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~--~~~~~~------~ 440 (564)
+.|+.+.+++... ++.. ..+..+..++ .+.+++++..++..+.++.+.+||+..... +..+.. +
T Consensus 170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~ 248 (361)
T 2oiz_A 170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKA 248 (361)
T ss_dssp ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHH
T ss_pred CCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccc
Confidence 8999988888765 3332 1122222222 233356777777788899999999865432 111110 0
Q ss_pred c----ccEEEEEEccCCCCCCCCCCcEEEEEEe----------CCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCE
Q 008467 441 S----KEIYTIRWSPTGSGTNNPNQQLILASAS----------FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 506 (564)
Q Consensus 441 ~----~~i~~i~~~p~~~~~~~~~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~ 506 (564)
. .....++++|++. .++++.+ ..++|.+||+.+++.+.++..+. +.+++|+|||++
T Consensus 249 ~~~~p~g~~~~a~~~dg~--------~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~ 318 (361)
T 2oiz_A 249 KNWVPGGYNLVGLHRASG--------RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNL 318 (361)
T ss_dssp TTCEECCSSCEEEETTTT--------EEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTE
T ss_pred cccccCCeeEEEEecCCC--------eEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCE
Confidence 0 0011256677653 3444443 13589999999999999998776 899999999999
Q ss_pred EEEEeCCCcEEEEeCCCC--eEEEEEe-cCCCEEEEEEccCCC
Q 008467 507 LASGSLDKSMHIWSLKEG--KIVKTYT-GNGGIFEVCWNKEGD 546 (564)
Q Consensus 507 lasgs~dg~i~iw~~~~~--~~~~~~~-~~~~i~~~~w~~~g~ 546 (564)
|++++. +.|.+||..++ ++++++. .......++++|+|.
T Consensus 319 l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 319 MLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 998887 99999999999 9998874 345678999999985
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.81 E-value=4.3e-18 Score=184.28 Aligned_cols=281 Identities=10% Similarity=0.045 Sum_probs=186.9
Q ss_pred eEccCCccceEEEEECCCCCEEEEE--ECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeE--------
Q 008467 210 TILEGHTSEVCACAWSPAGSLLASG--SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT-------- 279 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~~~~lasg--s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-------- 279 (564)
..+.+|...|..++|++++-+++++ +.++...||....+... +.... +...|.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------~~l~~----~~~~~~~~~~~~~~ 79 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAE-------------ESALP----APWNVRNRVFEYSG 79 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCE-------------EESSC----TTCCBCCCGGGTCC
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCc-------------ceeCC----CCccccccccccCC
Confidence 3467889999999999887777777 56889999986332110 01100 111222
Q ss_pred -EEEEC--CCCCE-EEEEeC-CCeEEEEECC--C-ceeEeecC-----CCCCEEEEEeCCCCCEEEEeeCC---------
Q 008467 280 -TLDWN--GEGTL-LATGSY-DGQARIWSTN--G-DLKCTLSK-----HKGPIFSLKWNKKGDYLLTGSCD--------- 337 (564)
Q Consensus 280 -~l~~s--~~g~~-l~sg~~-dg~i~vw~~~--~-~~~~~~~~-----h~~~V~~l~~~~~~~~l~s~s~D--------- 337 (564)
...|+ |||+. |+.++. +..|.+|+.. + .....+.. |...+.+++|+|+|+.|++++.|
T Consensus 80 ~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~ 159 (662)
T 3azo_A 80 FPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV 159 (662)
T ss_dssp CCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred ccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence 34455 99998 776654 5677788876 3 44445555 67788999999999999988876
Q ss_pred -CcEEEEECCC------cceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEec-CCCcceEEEEECC
Q 008467 338 -KTAIVWDVKT------EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDP 409 (564)
Q Consensus 338 -~~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~v~~~~ 409 (564)
.+|++||+.+ +. ...+. .+...+..++|+|
T Consensus 160 ~~~i~~~~~~~~~~~~~~~------------------------------------------~~~l~~~~~~~~~~~~~Sp 197 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSA------------------------------------------VRELSDDAHRFVTGPRLSP 197 (662)
T ss_dssp EEEEEEEETTSTTTTCGGG------------------------------------------SEESSCSCSSEECCCEECT
T ss_pred eeEEEEEECCCCccccCCc------------------------------------------eeEEEecCCCcccCceECC
Confidence 3566666654 22 12233 3445677789999
Q ss_pred CCCEEEEEeCC--------CcEEEEeCC-CC---eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC--eEE
Q 008467 410 TGSLLASCSDD--------VTAKIWNMK-QD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS--TVK 475 (564)
Q Consensus 410 ~~~~las~s~d--------g~i~iwd~~-~~---~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg--~i~ 475 (564)
||+.|+.++.+ ..|.+||+. ++ ........|...+..+.|+|+|. ++++++.++ .|.
T Consensus 198 DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~---------l~~~~~~~~~~~l~ 268 (662)
T 3azo_A 198 DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS---------LIVATDRTGWWNLH 268 (662)
T ss_dssp TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC---------EEEEECTTSSCEEE
T ss_pred CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe---------EEEEECCCCCeEEE
Confidence 99999888755 379999998 46 33333344567899999999875 677788888 677
Q ss_pred EEeCCCCeEEEEEeCCCCC--------EEEEEEcCCCCEEEEEeCCCcEEEE--eCCCCeEEEEEecCC-CEEEEEEccC
Q 008467 476 LWDVELGKLLYSLNGHREP--------VYSLAFSPTGEYLASGSLDKSMHIW--SLKEGKIVKTYTGNG-GIFEVCWNKE 544 (564)
Q Consensus 476 iwd~~~~~~~~~~~~h~~~--------i~~~~~spdg~~lasgs~dg~i~iw--~~~~~~~~~~~~~~~-~i~~~~w~~~ 544 (564)
+||+.+++.......+... +.+++|+|+++++++++. +.++|| ++.+++ +..+..+. .+..+ |+++
T Consensus 269 ~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~-~s~~ 345 (662)
T 3azo_A 269 RVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAAT-LTVS 345 (662)
T ss_dssp EECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEE-EEEE
T ss_pred EEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEE-EecC
Confidence 7777667654333333221 567899999999999999 999999 656665 45555443 34444 3566
Q ss_pred CCEEEE--EEcCCcEEEEE
Q 008467 545 GDKIAA--CFANHTVCVLD 561 (564)
Q Consensus 545 g~~la~--~~~~~~v~v~~ 561 (564)
|+.++. ++.+....||.
T Consensus 346 ~~~~~~~~~~~~~~~~i~~ 364 (662)
T 3azo_A 346 GTRAVGVAASPRTAYEVVE 364 (662)
T ss_dssp TTEEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEcCCCCCCEEEE
Confidence 665443 34444444543
No 169
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=9.8e-18 Score=168.80 Aligned_cols=285 Identities=12% Similarity=-0.002 Sum_probs=182.5
Q ss_pred eeEccCCccceEE-----EEECCCCCEEEEEEC-CCc--EEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEE
Q 008467 209 VTILEGHTSEVCA-----CAWSPAGSLLASGSG-DST--ARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT 280 (564)
Q Consensus 209 ~~~l~~h~~~V~~-----~~~sp~~~~lasgs~-D~~--i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 280 (564)
+..+..|...+.. .+|||||++||.++. ++. +.+|++.++... .. ...+...+..
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~--------------~l---t~~~~~~~~~ 85 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT--------------QL---TEGRGDNTFG 85 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE--------------EC---CCSSCBCSSS
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE--------------Ee---eeCCCCCccc
Confidence 3455556655555 789999999999887 674 777787665311 11 0111223335
Q ss_pred EEECCCCCEEEEEeCCCeEEEEECCCc-eeEeecCCCCCEEEEE--eCCCCCEEEEe----------------------e
Q 008467 281 LDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLK--WNKKGDYLLTG----------------------S 335 (564)
Q Consensus 281 l~~s~~g~~l~sg~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~--~~~~~~~l~s~----------------------s 335 (564)
+.|+|||+.|+.++.++.+++|+..+. .......+...+.... ++|++.+++.. .
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 86 GFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred eEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence 689999999999999999999998754 3334444555454444 48999988742 2
Q ss_pred CCCcEEEEECCCcceeEEEeecccCeEEEEcCC-Cc-eEEEEeC------CCeEEEEEcCCCceeeEecCCC--cceEEE
Q 008467 336 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NV-SFATSST------DNMIYVCKIGENRPIKTFAGHQ--GEVNCV 405 (564)
Q Consensus 336 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~------d~~i~~~~~~~~~~~~~~~~h~--~~i~~v 405 (564)
.+..|.+||+.+++.... ..+...+..+.|.+ +. .++.+.. ...|++++....... .+..+. ..+..+
T Consensus 166 ~~~~l~~~d~~~g~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~ 243 (388)
T 3pe7_A 166 PCCRLMRVDLKTGESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHE 243 (388)
T ss_dssp CCEEEEEEETTTCCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEE
T ss_pred CcceEEEEECCCCceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccc
Confidence 456899999998875543 33445567778876 54 3444433 337888887655443 333343 357789
Q ss_pred EECCCCCEEEEEeC-CC----cEEEEeCCCCeee--eeccccccc---EEEEEEccCCCCCCCCCCcEEEEE--------
Q 008467 406 KWDPTGSLLASCSD-DV----TAKIWNMKQDKYV--HDLREHSKE---IYTIRWSPTGSGTNNPNQQLILAS-------- 467 (564)
Q Consensus 406 ~~~~~~~~las~s~-dg----~i~iwd~~~~~~~--~~~~~~~~~---i~~i~~~p~~~~~~~~~~~~~l~s-------- 467 (564)
+|+|||+.|+..+. ++ .|.+||+.+++.. ..+..+... ...+.|+|+|.. ++++
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~--------l~~~~~~~~~~~ 315 (388)
T 3pe7_A 244 FWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSD--------APVDVQDDSGYK 315 (388)
T ss_dssp EECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECC--------C-----------
T ss_pred eECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCc--------ceeEeeeccccc
Confidence 99999997765443 22 3999999887642 222221100 011267887752 2222
Q ss_pred EeCCCeEEEEeCCCCeEEEEEeCCCC-----------CEEEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 008467 468 ASFDSTVKLWDVELGKLLYSLNGHRE-----------PVYSLAFSPTGEYLASGS-LDKSMHIWSL 521 (564)
Q Consensus 468 ~s~dg~i~iwd~~~~~~~~~~~~h~~-----------~i~~~~~spdg~~lasgs-~dg~i~iw~~ 521 (564)
...+..|++||+.+++. ..+..+.. .+.+++|||||++|+.++ .+|...||.+
T Consensus 316 ~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 316 IENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp -CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred cCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 25577999999998765 44554554 578899999999888766 4666666654
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.80 E-value=8.5e-17 Score=158.25 Aligned_cols=247 Identities=12% Similarity=0.143 Sum_probs=183.2
Q ss_pred CCCeEEEEECCCCCEEEEEeCC------------------------CeEEEEECC-CceeEeec-CCCCCEEEEEeCCCC
Q 008467 275 SKDVTTLDWNGEGTLLATGSYD------------------------GQARIWSTN-GDLKCTLS-KHKGPIFSLKWNKKG 328 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~sg~~d------------------------g~i~vw~~~-~~~~~~~~-~h~~~V~~l~~~~~~ 328 (564)
-..|.+++++++|+++++...+ +.|.+|+.. +.+...+. .+-....+++++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999999988877 479999985 66655443 444678999999999
Q ss_pred CEEEEeeCCCcEEEEECCCcc-eeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEE
Q 008467 329 DYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW 407 (564)
Q Consensus 329 ~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~ 407 (564)
+.+++.+.+++|++||..... .+..+..... ...-.++-.....+++
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~--------------------------------~g~~~~~~~~P~~ia~ 150 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQ--------------------------------PGSDQNHFCQPTDVAV 150 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTB--------------------------------CCCSTTCCSSEEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCC--------------------------------CCCCccccCCCcEEEE
Confidence 988888889999999975432 2221110000 0000123446789999
Q ss_pred CC-CCCEEEEEe-CCCcEEEEeCCCCeeeeecccc----------cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE
Q 008467 408 DP-TGSLLASCS-DDVTAKIWNMKQDKYVHDLREH----------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK 475 (564)
Q Consensus 408 ~~-~~~~las~s-~dg~i~iwd~~~~~~~~~~~~~----------~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~ 475 (564)
+| ++.++++.+ .++.|++|+ ..+..+..+... -.....++++|++. .++++...++.|+
T Consensus 151 ~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g--------~l~v~d~~~~~I~ 221 (329)
T 3fvz_A 151 EPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD--------QLCVADRENGRIQ 221 (329)
T ss_dssp CTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTT--------EEEEEETTTTEEE
T ss_pred eCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCC--------EEEEEECCCCEEE
Confidence 99 889888887 699999999 455565555322 22378899988732 3677788899999
Q ss_pred EEeCCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEE-------EeCCCcEEEEeCCCCeEEEEEec----CCCEEEEEEc
Q 008467 476 LWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLAS-------GSLDKSMHIWSLKEGKIVKTYTG----NGGIFEVCWN 542 (564)
Q Consensus 476 iwd~~~~~~~~~~~--~h~~~i~~~~~spdg~~las-------gs~dg~i~iw~~~~~~~~~~~~~----~~~i~~~~w~ 542 (564)
+||..+++.+..+. .+...+..++|+| |..+++ .+.+..|++|+..+|+++..+.. ...+.+++++
T Consensus 222 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~ 300 (329)
T 3fvz_A 222 CFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVAS 300 (329)
T ss_dssp EEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEEC
T ss_pred EEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEEC
Confidence 99999899888874 4556789999999 444433 33456899999999999988842 2348899999
Q ss_pred cCCCEEEEEEcCCcEEEEEee
Q 008467 543 KEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 543 ~~g~~la~~~~~~~v~v~~~~ 563 (564)
|+|+.+++...+++|.+|++.
T Consensus 301 ~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 301 EDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp TTSEEEEEESSSCCEEEEEEE
T ss_pred CCCCEEEEECCCCEEEEEeCC
Confidence 999888888889999999874
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.80 E-value=2.6e-16 Score=151.33 Aligned_cols=235 Identities=14% Similarity=0.262 Sum_probs=176.4
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeec------CCCCCEEEEEe-CCCCCEEEEeeC-CCcEEEEECC
Q 008467 275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS------KHKGPIFSLKW-NKKGDYLLTGSC-DKTAIVWDVK 346 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~------~h~~~V~~l~~-~~~~~~l~s~s~-D~~v~iwd~~ 346 (564)
...+.+++++++|+++++...++.|++|+.++.....+. .|...+.++++ .+++..+++... ++.|.+|| .
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~ 107 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-Q 107 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-T
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-C
Confidence 356889999999999998889999999998887665553 24457889999 567766666543 78999998 4
Q ss_pred CcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEE
Q 008467 347 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 426 (564)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iw 426 (564)
++.....+. ..+...+.+++++|+|+++++.+.++.|.+|
T Consensus 108 ~g~~~~~~~----------------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 147 (286)
T 1q7f_A 108 YGQFVRKFG----------------------------------------ATILQHPRGVTVDNKGRIIVVECKVMRVIIF 147 (286)
T ss_dssp TSCEEEEEC----------------------------------------TTTCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred CCcEEEEec----------------------------------------CccCCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 443322210 0123456789999999998888889999999
Q ss_pred eCCCCeeeeecc--cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC--CCCEEEEEEcC
Q 008467 427 NMKQDKYVHDLR--EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH--REPVYSLAFSP 502 (564)
Q Consensus 427 d~~~~~~~~~~~--~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~i~~~~~sp 502 (564)
|.. ++.+..+. .+...+..++++|++. ++++.+.++.|++||.. ++.+..+..+ ...+..|+++|
T Consensus 148 ~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~---------l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~ 216 (286)
T 1q7f_A 148 DQN-GNVLHKFGCSKHLEFPNGVVVNDKQE---------IFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS 216 (286)
T ss_dssp CTT-SCEEEEEECTTTCSSEEEEEECSSSE---------EEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECT
T ss_pred cCC-CCEEEEeCCCCccCCcEEEEECCCCC---------EEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECC
Confidence 965 44444443 3445678999998763 56677778999999974 6666666543 35789999999
Q ss_pred CCCEEEEEeCCC-cEEEEeCCCCeEEEEEecCC---CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 503 TGEYLASGSLDK-SMHIWSLKEGKIVKTYTGNG---GIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 503 dg~~lasgs~dg-~i~iw~~~~~~~~~~~~~~~---~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
+|+++++...++ .|.+|+. +++.+..+.... .+.+++|+|+|+.+++ ..+++|.||++.
T Consensus 217 ~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~ 279 (286)
T 1q7f_A 217 NGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV 279 (286)
T ss_dssp TCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred CCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence 999999888886 9999995 567777765432 3789999999987776 578999999874
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.79 E-value=4.5e-16 Score=149.72 Aligned_cols=247 Identities=14% Similarity=0.237 Sum_probs=177.5
Q ss_pred CCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEE-CCCCCEEEE
Q 008467 214 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW-NGEGTLLAT 292 (564)
Q Consensus 214 ~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~-s~~g~~l~s 292 (564)
+|...+.+++++|++.++++.+.++.|.+|+.. +... ..+. ..+....+...+..+++ .+++.++++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~----------~~~~-~~~~~~~~~~~p~~i~~~~~~g~l~v~ 94 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFK----------FQFG-ECGKRDSQLLYPNRVAVVRNSGDIIVT 94 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEE----------EEEC-CBSSSTTCBSSEEEEEEETTTTEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEE----------EEec-ccCCCcccccCceEEEEEcCCCeEEEE
Confidence 455678899999999999998899999999965 2210 0010 01111122346889999 578887777
Q ss_pred EeC-CCeEEEEECCCceeEeec-CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCc
Q 008467 293 GSY-DGQARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 370 (564)
Q Consensus 293 g~~-dg~i~vw~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (564)
... ++.|++|+.++.....+. .+...+.+++++|+|+.+++...++.|.+||.. +.....+.
T Consensus 95 ~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~--------------- 158 (286)
T 1q7f_A 95 ERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFG--------------- 158 (286)
T ss_dssp ECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEE---------------
T ss_pred cCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeC---------------
Confidence 654 899999998887766553 344578999999999988887788999999864 32221110
Q ss_pred eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc--cccEEEEE
Q 008467 371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH--SKEIYTIR 448 (564)
Q Consensus 371 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~--~~~i~~i~ 448 (564)
..++...+.+++++++|+++++.+.++.|++||.. +..+..+..+ ...+..++
T Consensus 159 ------------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~ 213 (286)
T 1q7f_A 159 ------------------------CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVG 213 (286)
T ss_dssp ------------------------CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEE
T ss_pred ------------------------CCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEE
Confidence 01233457889999999988888889999999975 4455555433 35678999
Q ss_pred EccCCCCCCCCCCcEEEEEEeCCC-eEEEEeCCCCeEEEEEeCCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 008467 449 WSPTGSGTNNPNQQLILASASFDS-TVKLWDVELGKLLYSLNGHR--EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 524 (564)
Q Consensus 449 ~~p~~~~~~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~h~--~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~ 524 (564)
++|++. ++++...++ .|++||.. ++.+..+..+. ..+.+++++|+|+++++ +.|++|++|++...
T Consensus 214 ~d~~G~---------l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 214 INSNGE---------ILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp ECTTCC---------EEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred ECCCCC---------EEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 998874 566666675 99999964 67666665443 24789999999987777 67999999998653
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.78 E-value=1.1e-16 Score=157.40 Aligned_cols=248 Identities=12% Similarity=0.183 Sum_probs=182.2
Q ss_pred cceEEEEECCCCCEEEEEECC------------------------CcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccc
Q 008467 217 SEVCACAWSPAGSLLASGSGD------------------------STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN 272 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D------------------------~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (564)
+.|.+++++|+|+++++.+.+ +.|.+||..++... ... + .
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~-------------~~~-~--~ 87 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL-------------QSS-G--K 87 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE-------------EEE-C--T
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE-------------ecc-C--C
Confidence 568999999999999998887 46888887655321 111 0 1
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc--eeEee---------cCCCCCEEEEEeCC-CCCEEEEee-CCCc
Q 008467 273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTL---------SKHKGPIFSLKWNK-KGDYLLTGS-CDKT 339 (564)
Q Consensus 273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~--~~~~~---------~~h~~~V~~l~~~~-~~~~l~s~s-~D~~ 339 (564)
........++++++|+++++...++.|++|+.++. ....+ ..+-....+++++| ++..+++.+ .++.
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 22346889999999999999888999999998876 44444 24445689999999 788778876 6899
Q ss_pred EEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC-CCEEEEEe
Q 008467 340 AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCS 418 (564)
Q Consensus 340 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~-~~~las~s 418 (564)
|++|| ..+.....+..... + .. ...++-.....++++|+ +.++++..
T Consensus 168 I~~~~-~~g~~~~~~~~~g~-------------------~---------~~---~~~~~~~~p~gia~d~~~g~l~v~d~ 215 (329)
T 3fvz_A 168 IVQFS-PSGKFVTQWGEESS-------------------G---------SS---PRPGQFSVPHSLALVPHLDQLCVADR 215 (329)
T ss_dssp EEEEC-TTSCEEEEECEECC-------------------S---------SS---CCTTEESCEEEEEEETTTTEEEEEET
T ss_pred EEEEc-CCCCEEEEeccCCC-------------------C---------CC---CCCcccCCCcEEEEECCCCEEEEEEC
Confidence 99999 44544433321100 0 00 00112234678999998 78888888
Q ss_pred CCCcEEEEeCCCCeeeeecc--cccccEEEEEEccCCCCCCCCCCcEEEEE-------EeCCCeEEEEeCCCCeEEEEEe
Q 008467 419 DDVTAKIWNMKQDKYVHDLR--EHSKEIYTIRWSPTGSGTNNPNQQLILAS-------ASFDSTVKLWDVELGKLLYSLN 489 (564)
Q Consensus 419 ~dg~i~iwd~~~~~~~~~~~--~~~~~i~~i~~~p~~~~~~~~~~~~~l~s-------~s~dg~i~iwd~~~~~~~~~~~ 489 (564)
.++.|++|+..+++.+..+. .+...++.++++| +. ++++ .+.+..|++||..+++.+..+.
T Consensus 216 ~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~---------~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~ 285 (329)
T 3fvz_A 216 ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GF---------LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK 285 (329)
T ss_dssp TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TE---------EEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC
T ss_pred CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CE---------EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc
Confidence 89999999998888877763 4566788999998 31 2222 2334589999999999988873
Q ss_pred ---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 008467 490 ---GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 522 (564)
Q Consensus 490 ---~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~ 522 (564)
++...+..|+++|+|.++++...+++|++|++.
T Consensus 286 ~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 286 PVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp CSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred CCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 566778999999999888888899999999975
No 174
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=5.1e-17 Score=163.82 Aligned_cols=276 Identities=10% Similarity=-0.021 Sum_probs=174.9
Q ss_pred eEEEEECCCCCEEEEEECC---CcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 008467 219 VCACAWSPAGSLLASGSGD---STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 295 (564)
Q Consensus 219 V~~~~~sp~~~~lasgs~D---~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~ 295 (564)
+..++|||+|++||..+.+ ..+.+|++.++... .... ........+.|+|||+.|+.++.
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~--------------~l~~---~~~~~~~~~~~spdg~~l~~~~~ 100 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV--------------QLTE---GKGDNTFGGFISTDERAFFYVKN 100 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE--------------ECCC---SSCBCTTTCEECTTSSEEEEEET
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE--------------Eeec---CCCCccccceECCCCCEEEEEEc
Confidence 6778999999998877543 36778887654310 1100 01111223689999999999999
Q ss_pred CCeEEEEECCCce-eEeecCCCCCEEE-------------------EEeCCCCCEEEEe-----eCCCcEEEEECCCcce
Q 008467 296 DGQARIWSTNGDL-KCTLSKHKGPIFS-------------------LKWNKKGDYLLTG-----SCDKTAIVWDVKTEEW 350 (564)
Q Consensus 296 dg~i~vw~~~~~~-~~~~~~h~~~V~~-------------------l~~~~~~~~l~s~-----s~D~~v~iwd~~~~~~ 350 (564)
++.|++|+..+.. ......+...... +.|+|+++.++.+ ..+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (396)
T 3c5m_A 101 ELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL 180 (396)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE
T ss_pred CCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE
Confidence 9999999987543 3333333332222 3567777766544 3567899999998876
Q ss_pred eEEEeecccCeEEEEcCC-C-ceEEEEeCC------CeEEEEEcCCCceeeEecCC-CcceEEEEECCCCCEEEEEeCC-
Q 008467 351 KQQFEFHSGPTLDVDWRN-N-VSFATSSTD------NMIYVCKIGENRPIKTFAGH-QGEVNCVKWDPTGSLLASCSDD- 420 (564)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~~d------~~i~~~~~~~~~~~~~~~~h-~~~i~~v~~~~~~~~las~s~d- 420 (564)
.... .+...+..+.|.+ + ..++..+.+ ..|++++............. ...+..++|+|+|+.|+.++.+
T Consensus 181 ~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (396)
T 3c5m_A 181 EVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFK 259 (396)
T ss_dssp EEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred Eeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCC
Confidence 5544 3445566777866 3 334443332 46888888665433322221 2357889999999987777654
Q ss_pred ----CcEEEEeCCCCeeeeecccccccEEEEEEcc-CCCCCCCCCCcEEEEEEe----------------CCCeEEEEeC
Q 008467 421 ----VTAKIWNMKQDKYVHDLREHSKEIYTIRWSP-TGSGTNNPNQQLILASAS----------------FDSTVKLWDV 479 (564)
Q Consensus 421 ----g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p-~~~~~~~~~~~~~l~s~s----------------~dg~i~iwd~ 479 (564)
+.|.+||+.+++.... ..... .. +.|+| ++. ++++++ .++.|++||+
T Consensus 260 ~~~~~~l~~~d~~~g~~~~l-~~~~~-~~-~~~s~~dg~---------~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 260 GQTDRVIYKANPETLENEEV-MVMPP-CS-HLMSNFDGS---------LMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp TTCCEEEEEECTTTCCEEEE-EECCS-EE-EEEECSSSS---------EEEEEECCC----------CCCCCCEEEEEET
T ss_pred CCccceEEEEECCCCCeEEe-eeCCC-CC-CCccCCCCc---------eEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 4599999987764332 11111 23 88998 774 444443 3478999999
Q ss_pred CCCeEEEEEeCCCC-----------CEEEEEEcCCCCEEEEEeC-CCc--EEEEeCCCCe
Q 008467 480 ELGKLLYSLNGHRE-----------PVYSLAFSPTGEYLASGSL-DKS--MHIWSLKEGK 525 (564)
Q Consensus 480 ~~~~~~~~~~~h~~-----------~i~~~~~spdg~~lasgs~-dg~--i~iw~~~~~~ 525 (564)
.+++.. .+..+.. .+..++|+|||++|+.++. ++. |.++++.++.
T Consensus 328 ~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 328 KAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp TTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred ccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence 887643 3444443 2567899999999887765 454 4444555543
No 175
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.76 E-value=5.6e-16 Score=152.56 Aligned_cols=267 Identities=11% Similarity=0.101 Sum_probs=191.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEe
Q 008467 276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE 355 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 355 (564)
..|.+++|++++..+++.+.++.++.| .+.....+..+...+.+++|+++|+.++++..++.|.+||+.++++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~ 83 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI--TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV 83 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE--ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc--ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee
Confidence 447778899988888777888899999 344555666677778999999999987888889999999998887665443
Q ss_pred ecccCeEEEEcCCCc-eEEEEeCC----CeEEEEEcCCCceeeEec--CCCcceEEEEECCCCCEEEEEeC------CCc
Q 008467 356 FHSGPTLDVDWRNNV-SFATSSTD----NMIYVCKIGENRPIKTFA--GHQGEVNCVKWDPTGSLLASCSD------DVT 422 (564)
Q Consensus 356 ~~~~~~~~~~~~~~~-~~~~~~~d----~~i~~~~~~~~~~~~~~~--~h~~~i~~v~~~~~~~~las~s~------dg~ 422 (564)
.+...+..+.+..+. .+++...+ +.|++|+.........+. .+...+++++++|+|+++++... .+.
T Consensus 84 ~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~ 163 (333)
T 2dg1_A 84 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG 163 (333)
T ss_dssp CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCce
Confidence 445567788886554 44555455 589999887665443332 24457899999999998887664 345
Q ss_pred EEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEE--------EEeCCCC
Q 008467 423 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLY--------SLNGHRE 493 (564)
Q Consensus 423 i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~--------~~~~h~~ 493 (564)
|..|+..+++.. .+......+..++|+|++. .++++.+.++.|.+||+.. +..+. .+.++ .
T Consensus 164 l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~--------~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~ 233 (333)
T 2dg1_A 164 VYYVSPDFRTVT-PIIQNISVANGIALSTDEK--------VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-E 233 (333)
T ss_dssp EEEECTTSCCEE-EEEEEESSEEEEEECTTSS--------EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-S
T ss_pred EEEEeCCCCEEE-EeecCCCcccceEECCCCC--------EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-C
Confidence 666665554432 2223334578899999874 2445566688999999863 33221 12222 3
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC-------CEEEEEEccCCCEEEEEEcCC
Q 008467 494 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-------GIFEVCWNKEGDKIAACFANH 555 (564)
Q Consensus 494 ~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~-------~i~~~~w~~~g~~la~~~~~~ 555 (564)
.+..++++++|+++++...++.|.+|+. +++.+..+.... .+.+++|++||+.|.++..++
T Consensus 234 ~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 234 GPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 5788999999999888888899999998 577777775432 478999999998887776653
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.75 E-value=7.2e-16 Score=152.63 Aligned_cols=256 Identities=11% Similarity=0.124 Sum_probs=176.3
Q ss_pred CCeEEEEECCCCCEEEEEe---------CCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCC---C--cEE
Q 008467 276 KDVTTLDWNGEGTLLATGS---------YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---K--TAI 341 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~---------~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~--~v~ 341 (564)
..+..+.+ ||+.++... .++.|.+|+..+.....+ ..+..++|+|+|++|+.++.+ + .|.
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 34667777 888887642 256889999876544444 567889999999999887754 3 378
Q ss_pred EEECCCcceeEEEeecccCeEEEEcCCC-ceEEEEeC---------------------------CCeEEEEEcCCCceee
Q 008467 342 VWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSST---------------------------DNMIYVCKIGENRPIK 393 (564)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------------------------d~~i~~~~~~~~~~~~ 393 (564)
+||+.+++......... +..+.|.++ ..++.++. ...|++|++..+..+.
T Consensus 89 ~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 166 (347)
T 2gop_A 89 VADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIE 166 (347)
T ss_dssp EEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEE
T ss_pred EEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEe
Confidence 88888877665544433 778889754 44554442 2568899998777645
Q ss_pred EecCCCcceEEEEECCCCCEEEEEeCCC-------cEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEE
Q 008467 394 TFAGHQGEVNCVKWDPTGSLLASCSDDV-------TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA 466 (564)
Q Consensus 394 ~~~~h~~~i~~v~~~~~~~~las~s~dg-------~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~ 466 (564)
.+.. . .+..++|+|+| ++++++.+. ...||.+.+++ ...+..+ ..+..+ +|+|. .|+
T Consensus 167 ~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~---------~l~ 230 (347)
T 2gop_A 167 EFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGE---------RIL 230 (347)
T ss_dssp EEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSS---------CEE
T ss_pred eecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCC---------EEE
Confidence 5544 3 78899999999 888776652 44555544443 3344444 445444 78775 344
Q ss_pred EEeCC--------CeEEEEeCCCCeEEEEEeCCCCCEEE-EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEE
Q 008467 467 SASFD--------STVKLWDVELGKLLYSLNGHREPVYS-LAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF 537 (564)
Q Consensus 467 s~s~d--------g~i~iwd~~~~~~~~~~~~h~~~i~~-~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~ 537 (564)
.++.+ ..|.+|| +++......++...+.. +.|+ || ++++++.++.++|| +.+++......+.+.+.
T Consensus 231 ~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~ 305 (347)
T 2gop_A 231 LYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIM 305 (347)
T ss_dssp EEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEE
T ss_pred EEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEE
Confidence 44433 4788888 56654444456677886 9999 99 99999999999999 87777766666666789
Q ss_pred EEEEccCCCEEEEEEcCCcE-EEEEe
Q 008467 538 EVCWNKEGDKIAACFANHTV-CVLDF 562 (564)
Q Consensus 538 ~~~w~~~g~~la~~~~~~~v-~v~~~ 562 (564)
+++|+| ..++++..++.. .||.+
T Consensus 306 ~~~~s~--~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 306 GFDVDE--IVVYLKETATRLRELFTW 329 (347)
T ss_dssp EEEESS--SEEEEEECSSSCCEEEEE
T ss_pred eeeeeC--cEEEEEcCCCChHHheEe
Confidence 999999 666666666554 66654
No 177
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.75 E-value=8.2e-17 Score=176.26 Aligned_cols=310 Identities=11% Similarity=0.108 Sum_probs=188.6
Q ss_pred eEccCCccc-----eEEEEECCCCCEEEEEECC---------CcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCC
Q 008467 210 TILEGHTSE-----VCACAWSPAGSLLASGSGD---------STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKS 275 (564)
Q Consensus 210 ~~l~~h~~~-----V~~~~~sp~~~~lasgs~D---------~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (564)
.++.+|... ....+|||||++|+.++.+ +.+.+||+.++.... ...+.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~------------------l~~~~ 111 (740)
T 4a5s_A 50 VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT------------------EERIP 111 (740)
T ss_dssp EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC------------------SSCCC
T ss_pred EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE------------------cccCC
Confidence 445566533 2347899999999998876 556799998764211 11223
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEe--ecCCCCCE-----------------EEEEeCCCCCEEEEeeC
Q 008467 276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCT--LSKHKGPI-----------------FSLKWNKKGDYLLTGSC 336 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~--~~~h~~~V-----------------~~l~~~~~~~~l~s~s~ 336 (564)
..+...+|||||+.||.+. ++.|++|+..+..... ..++...+ .++.|||||++|+.++.
T Consensus 112 ~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~ 190 (740)
T 4a5s_A 112 NNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQF 190 (740)
T ss_dssp TTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEE
T ss_pred CcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEE
Confidence 5689999999999999884 6899999976543332 23333333 24899999999999887
Q ss_pred CCc-EEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCC---Cc--eeeEec------CCCcceEE
Q 008467 337 DKT-AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE---NR--PIKTFA------GHQGEVNC 404 (564)
Q Consensus 337 D~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~---~~--~~~~~~------~h~~~i~~ 404 (564)
|.+ +.+|++....... .+......+.+..... ......|++|++.+ +. ....+. +|...+..
T Consensus 191 d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~---~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 264 (740)
T 4a5s_A 191 NDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGA---VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCD 264 (740)
T ss_dssp ECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTS---CCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEE
T ss_pred cccCCceEEEEeecCCC---CCCCcceeecCCCCcC---cCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEE
Confidence 765 8888763211000 0011112222211100 01123688999987 62 222333 48888999
Q ss_pred EEECCCCCEEEEEeC----CCcEEEEeCCCCe----eee--ec--ccccccEE-----EEEEccCCCCCCCCCCcEEEEE
Q 008467 405 VKWDPTGSLLASCSD----DVTAKIWNMKQDK----YVH--DL--REHSKEIY-----TIRWSPTGSGTNNPNQQLILAS 467 (564)
Q Consensus 405 v~~~~~~~~las~s~----dg~i~iwd~~~~~----~~~--~~--~~~~~~i~-----~i~~~p~~~~~~~~~~~~~l~s 467 (564)
++|+|||++++.... +..|++||+.+++ +.. .+ ..|...+. ...|+|+|. .++..
T Consensus 265 ~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~--------~l~~~ 336 (740)
T 4a5s_A 265 VTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGN--------SFYKI 336 (740)
T ss_dssp EEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSS--------EEEEE
T ss_pred EEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCC--------EEEEE
Confidence 999999997665533 3479999998876 221 11 23444333 678999875 23324
Q ss_pred Ee-CC--CeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEE-EEeC----CCcEEEE--eCCCCeEEEEEec-----
Q 008467 468 AS-FD--STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLA-SGSL----DKSMHIW--SLKEGKIVKTYTG----- 532 (564)
Q Consensus 468 ~s-~d--g~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~la-sgs~----dg~i~iw--~~~~~~~~~~~~~----- 532 (564)
.+ .+ ..|.+||+..++.. .+......|..+.. +|++.|+ +++. .+...|| ++..+.....++.
T Consensus 337 ~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~ 414 (740)
T 4a5s_A 337 ISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPE 414 (740)
T ss_dssp EECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTT
T ss_pred EEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCC
Confidence 44 34 46888898866544 44444555666542 4466554 4444 2344454 4444333223332
Q ss_pred CCCEEEEEEccCCCEEEEEEcC
Q 008467 533 NGGIFEVCWNKEGDKIAACFAN 554 (564)
Q Consensus 533 ~~~i~~~~w~~~g~~la~~~~~ 554 (564)
......++|+|+|++++..+.+
T Consensus 415 ~~~~~~~~~S~dg~~~~~~~s~ 436 (740)
T 4a5s_A 415 RCQYYSVSFSKEAKYYQLRCSG 436 (740)
T ss_dssp TBCBEEEEECTTSSEEEEEECS
T ss_pred CCceEEEEECCCCCEEEEEeCC
Confidence 2467899999999988877654
No 178
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.75 E-value=1.7e-15 Score=149.89 Aligned_cols=258 Identities=14% Similarity=0.148 Sum_probs=173.9
Q ss_pred ceEEEEECCCCCEEEEEE---------CCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 218 EVCACAWSPAGSLLASGS---------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 218 ~V~~~~~sp~~~~lasgs---------~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
.+...+| +|+.+|... .++.|.+|++.++.. ... ..+..++|||||+
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~--------------~~l--------~~~~~~~~SpDg~ 71 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR--------------RFI--------ENATMPRISPDGK 71 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE--------------EEE--------ESCEEEEECTTSS
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce--------------EEc--------ccCCCeEECCCCC
Confidence 3566677 888777642 256788999876431 011 2478899999999
Q ss_pred EEEEEeCC---C--eEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCC--------------------------
Q 008467 289 LLATGSYD---G--QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-------------------------- 337 (564)
Q Consensus 289 ~l~sg~~d---g--~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-------------------------- 337 (564)
.|+.++.+ + .|.+|+..+.....+..+.. +.++.|+|+|+.|+.++.+
T Consensus 72 ~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (347)
T 2gop_A 72 KIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGE 150 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------C
T ss_pred EEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCc
Confidence 99987754 3 37777876554444433344 9999999999999887643
Q ss_pred -CcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCC---------CeEEEEEcCCCceeeEecCCCcceEEEEE
Q 008467 338 -KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTD---------NMIYVCKIGENRPIKTFAGHQGEVNCVKW 407 (564)
Q Consensus 338 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---------~~i~~~~~~~~~~~~~~~~h~~~i~~v~~ 407 (564)
..|.+||+.+++.+..+.. . .+..+.|.++..++++..+ ..|++++ .+. ...+..+ ..+..+
T Consensus 151 ~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~-~~~~~~-- 222 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGK-EEKMFEK-VSFYAV-- 222 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTE-EEEEEEE-ESEEEE--
T ss_pred cceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC--CCc-eEEeccC-cceeeE--
Confidence 5789999998877444444 3 6667788776633344332 2455555 333 3344444 555544
Q ss_pred CCCCCEEEEEeCCC--------cEEEEeCCCCeeeeecccccccEEE-EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEe
Q 008467 408 DPTGSLLASCSDDV--------TAKIWNMKQDKYVHDLREHSKEIYT-IRWSPTGSGTNNPNQQLILASASFDSTVKLWD 478 (564)
Q Consensus 408 ~~~~~~las~s~dg--------~i~iwd~~~~~~~~~~~~~~~~i~~-i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd 478 (564)
+|+|+.|+.++.++ .|.+|| +++.......+...+.. +.|+ ++ ++++++.++.++||
T Consensus 223 spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg----------~~~~~~~~~~~~l~- 288 (347)
T 2gop_A 223 DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK----------VYFTLFEEGSVNLY- 288 (347)
T ss_dssp EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE----------EEEEEEETTEEEEE-
T ss_pred CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc----------EEEEEecCCcEEEE-
Confidence 99999988877543 677787 55544444455677776 8887 53 57788899999999
Q ss_pred CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcE-EEEeCCCCeE
Q 008467 479 VELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM-HIWSLKEGKI 526 (564)
Q Consensus 479 ~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i-~iw~~~~~~~ 526 (564)
+.+++.. .+..+...|.+++|+| .++++++.++.. .||.+. ++.
T Consensus 289 ~~~g~~~-~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~~ 333 (347)
T 2gop_A 289 IWDGEIK-PIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GEE 333 (347)
T ss_dssp EESSSEE-EEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SSE
T ss_pred EcCCceE-EEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-CcE
Confidence 8766654 4444577899999999 677777777654 677665 553
No 179
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.74 E-value=1.6e-14 Score=151.18 Aligned_cols=310 Identities=14% Similarity=0.091 Sum_probs=210.3
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEC-
Q 008467 226 PAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST- 304 (564)
Q Consensus 226 p~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~- 304 (564)
|.+.++++...++.+.++|..+++.. .... ....+..+.|||||+++++++.|+.|.+||.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~-------------~~i~-----~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~ 226 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIK-------------TVLD-----TGYAVHISRLSASGRYLFVIGRDGKVNMIDLW 226 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEE-------------EEEE-----CSSCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEE-------------EEEe-----CCCCccceEECCCCCEEEEEcCCCeEEEEECC
Confidence 44557777888999999998776421 1111 1234678999999999999999999999998
Q ss_pred --CCceeEeecCCCCCEEEEEeC----CCCCEEEEee-CCCcEEEEECCCcceeEEEeecc----------c-CeEEEEc
Q 008467 305 --NGDLKCTLSKHKGPIFSLKWN----KKGDYLLTGS-CDKTAIVWDVKTEEWKQQFEFHS----------G-PTLDVDW 366 (564)
Q Consensus 305 --~~~~~~~~~~h~~~V~~l~~~----~~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~----------~-~~~~~~~ 366 (564)
.+.....+..... ...++|+ |+|+++++++ .+++|.++|..+.+.+..+.... . .+..+..
T Consensus 227 ~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 227 MKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA 305 (567)
T ss_dssp SSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred CCCCcEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEE
Confidence 4455555554333 4789999 6999887665 45899999999988887765322 1 1222222
Q ss_pred C--CCceEEEEeCCCeEEEEEcCCCceeeEe-cCCCcceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCeeeeeccc---
Q 008467 367 R--NNVSFATSSTDNMIYVCKIGENRPIKTF-AGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKYVHDLRE--- 439 (564)
Q Consensus 367 ~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~-~~h~~~i~~v~~~~~~~~las~s-~dg~i~iwd~~~~~~~~~~~~--- 439 (564)
. ....++.....+.|.+++.......... .........+.|+|+|++++++. .+++|.++|+.+++.+..+..
T Consensus 306 s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~ 385 (567)
T 1qks_A 306 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ 385 (567)
T ss_dssp CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred cCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc
Confidence 2 2233445566788888887654322211 12233466789999999876655 578999999999987655432
Q ss_pred --ccccEEEEEEccCCCCCCCCCCcEEEEEEe-CCCeEEEEeCCC-------CeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 008467 440 --HSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVEL-------GKLLYSLNGHREPVYSLAFSPTGEYLAS 509 (564)
Q Consensus 440 --~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~-------~~~~~~~~~h~~~i~~~~~spdg~~las 509 (564)
|.+.-..+ +.|++. .+.+++. .+++|.++|... .+.+.++......-..|.++|++++|.+
T Consensus 386 ~Phpg~g~~~-~~p~~g--------~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v 456 (567)
T 1qks_A 386 TPHPGRGANF-VHPTFG--------PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYV 456 (567)
T ss_dssp SBCCTTCEEE-EETTTE--------EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEE
T ss_pred CCCCccceee-ECCCCC--------cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEE
Confidence 32211111 345432 2455554 568999999987 6778888765444456789999999987
Q ss_pred EeC-------CCcEEEEeCCCC-----e-EEEEEe---------cCCCEEEEEEccCCCEEEEEEc-----CCcEEEEEe
Q 008467 510 GSL-------DKSMHIWSLKEG-----K-IVKTYT---------GNGGIFEVCWNKEGDKIAACFA-----NHTVCVLDF 562 (564)
Q Consensus 510 gs~-------dg~i~iw~~~~~-----~-~~~~~~---------~~~~i~~~~w~~~g~~la~~~~-----~~~v~v~~~ 562 (564)
... .++|.++|+.+. . ...... +...+..+.|+++|+.+.++.. ++.|.|+|-
T Consensus 457 ~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~ 536 (567)
T 1qks_A 457 DATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD 536 (567)
T ss_dssp ECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred ecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEEC
Confidence 663 358999999876 2 113332 1345889999999998887743 578999985
Q ss_pred e
Q 008467 563 R 563 (564)
Q Consensus 563 ~ 563 (564)
+
T Consensus 537 ~ 537 (567)
T 1qks_A 537 K 537 (567)
T ss_dssp T
T ss_pred C
Confidence 3
No 180
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.73 E-value=1.5e-15 Score=146.89 Aligned_cols=233 Identities=13% Similarity=0.116 Sum_probs=169.5
Q ss_pred CCeEEEEECCCCC-EEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467 276 KDVTTLDWNGEGT-LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 354 (564)
Q Consensus 276 ~~V~~l~~s~~g~-~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 354 (564)
....+++|+|+|+ +++++..++.|..|+..+. ...+..+...+.+++++++|+.+++...++.|.+||..++++....
T Consensus 28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~ 106 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIA 106 (296)
T ss_dssp SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEE
T ss_pred ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEe
Confidence 3467899999998 7888889999999999877 6667777888999999999998887777889999998777643221
Q ss_pred eecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC---------------
Q 008467 355 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD--------------- 419 (564)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~--------------- 419 (564)
.... . .....++.++++|+|+++++.+.
T Consensus 107 ~~~~------------------------------~-------~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~ 149 (296)
T 3e5z_A 107 DSFE------------------------------G-------KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEME 149 (296)
T ss_dssp CEET------------------------------T-------EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCC
T ss_pred eccC------------------------------C-------CCCCCCCCEEECCCCCEEEECCcccccccccccccccc
Confidence 1000 0 01124567899999999887321
Q ss_pred --CCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-CCeE---EEEEeCCCC
Q 008467 420 --DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKL---LYSLNGHRE 493 (564)
Q Consensus 420 --dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~---~~~~~~h~~ 493 (564)
.+.|..++.. + .+..+..+......++|+|++. +|++.+.++.|.+|++. .++. ...+..+..
T Consensus 150 ~~~~~l~~~~~~-g-~~~~~~~~~~~~~gi~~s~dg~---------~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 218 (296)
T 3e5z_A 150 LPGRWVFRLAPD-G-TLSAPIRDRVKPNGLAFLPSGN---------LLVSDTGDNATHRYCLNARGETEYQGVHFTVEPG 218 (296)
T ss_dssp SSSCEEEEECTT-S-CEEEEECCCSSEEEEEECTTSC---------EEEEETTTTEEEEEEECSSSCEEEEEEEECCSSS
T ss_pred CCCcEEEEECCC-C-CEEEeecCCCCCccEEECCCCC---------EEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCC
Confidence 2345555544 3 3334445556678999999875 44777888999999986 5554 233333445
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEE-ccCCCEEEEEEcCCcEEEEE
Q 008467 494 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCW-NKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 494 ~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w-~~~g~~la~~~~~~~v~v~~ 561 (564)
.+..++++++|+++++. ++.|.+|+.. |+.+..+.....+.+++| +++++.|.++..++ +.-++
T Consensus 219 ~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~~-l~~~~ 283 (296)
T 3e5z_A 219 KTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQTTSNLCFGGPEGRTLYMTVSTE-FWSIE 283 (296)
T ss_dssp CCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSCCCEEEEESTTSCEEEEEETTE-EEEEE
T ss_pred CCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCCceeEEEECCCCCEEEEEcCCe-EEEEE
Confidence 56789999999977766 7889999986 777777776555889999 68999999987764 43333
No 181
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.70 E-value=1e-15 Score=165.53 Aligned_cols=236 Identities=11% Similarity=0.035 Sum_probs=167.5
Q ss_pred CCCCeEEEEECCCCCEEEEE--eCCCeEEEEE-CCCceeEeecCCCCCEE---------EEEeC--CCCCE-EEEeeC-C
Q 008467 274 KSKDVTTLDWNGEGTLLATG--SYDGQARIWS-TNGDLKCTLSKHKGPIF---------SLKWN--KKGDY-LLTGSC-D 337 (564)
Q Consensus 274 ~~~~V~~l~~s~~g~~l~sg--~~dg~i~vw~-~~~~~~~~~~~h~~~V~---------~l~~~--~~~~~-l~s~s~-D 337 (564)
+...|..++|++++.++++. +.++...||. ..+.....+..|...+. ...|+ |+|++ |+.++. +
T Consensus 22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~ 101 (662)
T 3azo_A 22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGD 101 (662)
T ss_dssp TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTT
T ss_pred cCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCC
Confidence 45679999999987777777 5688899998 34444556666666655 55565 99988 665443 4
Q ss_pred CcEEEEECC--C-cceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecC-----CCcceEEEEECC
Q 008467 338 KTAIVWDVK--T-EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG-----HQGEVNCVKWDP 409 (564)
Q Consensus 338 ~~v~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-----h~~~i~~v~~~~ 409 (564)
..|.+|++. + +.. ..+.. |...+.+++|+|
T Consensus 102 ~~l~~~~~~~~g~~~~------------------------------------------~~l~~~~~~~~~~~~~~~~~sp 139 (662)
T 3azo_A 102 QRLYAFEPDAPGGAVP------------------------------------------RPLTPVSAVGGGLRWADPVLLP 139 (662)
T ss_dssp CCEEEECTTSTTCCCC------------------------------------------EECSCCCCSTTCEEEEEEEEET
T ss_pred CeEEEEcCCCCCCCCC------------------------------------------EeccCCccCCCCccccCcEECC
Confidence 455555543 1 221 11222 556788999999
Q ss_pred CCCEEEEEeCC----------CcEEEEeCCC------Ceeeeecc-cccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-
Q 008467 410 TGSLLASCSDD----------VTAKIWNMKQ------DKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFD- 471 (564)
Q Consensus 410 ~~~~las~s~d----------g~i~iwd~~~------~~~~~~~~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d- 471 (564)
||+.|++++.| ..|.+||+.+ +.. ..+. .+...+..+.|+|+|. .|+.++.+
T Consensus 140 Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~---------~la~~~~~~ 209 (662)
T 3azo_A 140 ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGR---------QAVWLAWDH 209 (662)
T ss_dssp TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSS---------EEEEEEECT
T ss_pred CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCC---------EEEEEECCC
Confidence 99999998877 5899999987 443 4455 5566778899999986 56655544
Q ss_pred -------CeEEEEeCC-CC---eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCeEEEEEecCCC---
Q 008467 472 -------STVKLWDVE-LG---KLLYSLNGHREPVYSLAFSPTGEYLASGSLDK--SMHIWSLKEGKIVKTYTGNGG--- 535 (564)
Q Consensus 472 -------g~i~iwd~~-~~---~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg--~i~iw~~~~~~~~~~~~~~~~--- 535 (564)
..|++||+. ++ +......+|...+..++|||||+++++++.++ .|.+|++.+++..........
T Consensus 210 ~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 289 (662)
T 3azo_A 210 PRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAG 289 (662)
T ss_dssp TCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSC
T ss_pred CCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccC
Confidence 479999998 57 44444445567899999999999888888888 677777767765544333221
Q ss_pred ------EEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 536 ------IFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 536 ------i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
+..++|+++|+.++++.. +.+.||.+
T Consensus 290 p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 290 PLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp CCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred ccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 457889999999999888 88888844
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.70 E-value=7.9e-15 Score=159.81 Aligned_cols=252 Identities=11% Similarity=0.128 Sum_probs=164.4
Q ss_pred CeEEEEECCCCCEEEEEeCCC-----eEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCccee
Q 008467 277 DVTTLDWNGEGTLLATGSYDG-----QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 351 (564)
Q Consensus 277 ~V~~l~~s~~g~~l~sg~~dg-----~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 351 (564)
.+..++|||||++|+.+..++ .|++|+..+............+.+++|+|+|+.|+.++.++. ....
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~-------~~~~- 197 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQ-------DGKS- 197 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCC-------SSCC-
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCc-------cccc-
Confidence 588999999999999876643 899999876543322222223567999999999998887754 0000
Q ss_pred EEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCce--eeEec--CCCcceEEEEECCCCCEEEEEeC-----CCc
Q 008467 352 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP--IKTFA--GHQGEVNCVKWDPTGSLLASCSD-----DVT 422 (564)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~--~~~~~--~h~~~i~~v~~~~~~~~las~s~-----dg~ 422 (564)
. +... .......|++|++.++.. ...+. .|...+..+.|+|||++|+.++. +..
T Consensus 198 ---~---~~~~-----------~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~ 260 (710)
T 2xdw_A 198 ---D---GTET-----------STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNR 260 (710)
T ss_dssp ---S---SSCC-----------CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCE
T ss_pred ---c---cccc-----------ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccE
Confidence 0 0000 000122345555544331 12222 24556778999999999887765 568
Q ss_pred EEEEeCCC------Ce-eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC---CeEEEEeCCCCe--EEEEEeC
Q 008467 423 AKIWNMKQ------DK-YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD---STVKLWDVELGK--LLYSLNG 490 (564)
Q Consensus 423 i~iwd~~~------~~-~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~--~~~~~~~ 490 (564)
|.+||+.+ +. ....+..+...+.. .|+|+|. .+++.+..+ +.|.+||+.++. ....+..
T Consensus 261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~--------~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~ 331 (710)
T 2xdw_A 261 LWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGT--------VFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP 331 (710)
T ss_dssp EEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETT--------EEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC
T ss_pred EEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCC--------EEEEEECCCCCCCEEEEEeCCCCCcccceeccC
Confidence 99999876 42 34455555555554 4777764 233444333 479999998764 2234545
Q ss_pred CCC--CEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcC----CcEEEEE
Q 008467 491 HRE--PVYSLAFSPTGEYLASGSLDK--SMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFAN----HTVCVLD 561 (564)
Q Consensus 491 h~~--~i~~~~~spdg~~lasgs~dg--~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~----~~v~v~~ 561 (564)
|.. .+..++|++++.+++++..|+ .|.+|++.+|+.+..+... +.+..++|+|+++.|++.+.+ +++.+||
T Consensus 332 ~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 332 EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411 (710)
T ss_dssp CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred CCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 543 688899998888889998888 4667787778877766543 457889999999988866554 4677777
Q ss_pred e
Q 008467 562 F 562 (564)
Q Consensus 562 ~ 562 (564)
+
T Consensus 412 ~ 412 (710)
T 2xdw_A 412 L 412 (710)
T ss_dssp T
T ss_pred C
Confidence 5
No 183
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.70 E-value=5.7e-13 Score=128.39 Aligned_cols=277 Identities=8% Similarity=0.037 Sum_probs=195.6
Q ss_pred CCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEE
Q 008467 214 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 293 (564)
Q Consensus 214 ~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg 293 (564)
.+...+.+++++|+|+++++...++.+.+|+.. +.. .. .. . ......+.+++++++|.++++.
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~---------~~--~~-~----~~~~~~~~~i~~~~~g~l~v~~ 74 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI---------TE--YP-L----PTPDAKVMCLTISSDGEVWFTE 74 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE---------EE--EE-C----SSTTCCEEEEEECTTSCEEEEE
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe---------EE--ec-C----CcccCceeeEEECCCCCEEEeC
Confidence 345678999999999988877778899999875 321 00 00 0 0123568999999999988887
Q ss_pred eCCCeEEEEECCCceeEe-ecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceE
Q 008467 294 SYDGQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF 372 (564)
Q Consensus 294 ~~dg~i~vw~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (564)
..++.|..|+..+..... +......+.++.+.++|..+++...++.|.+||. ++.... +
T Consensus 75 ~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~-~------------------ 134 (299)
T 2z2n_A 75 NAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE-Y------------------ 134 (299)
T ss_dssp TTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-E------------------
T ss_pred CCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE-e------------------
Confidence 778999999987654322 2234557899999999988887777889999987 443221 0
Q ss_pred EEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeee-cccccccEEEEEEcc
Q 008467 373 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD-LREHSKEIYTIRWSP 451 (564)
Q Consensus 373 ~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~-~~~~~~~i~~i~~~p 451 (564)
....+...+.+++++++|.++++...++.|..||. +++.... +......+..+++.+
T Consensus 135 ---------------------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~ 192 (299)
T 2z2n_A 135 ---------------------ELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGN 192 (299)
T ss_dssp ---------------------ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT
T ss_pred ---------------------cCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECC
Confidence 00112345778999999998888777889999998 5544322 233445678899888
Q ss_pred CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE-EEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 008467 452 TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY-SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 530 (564)
Q Consensus 452 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~ 530 (564)
++. +.++...++.|.+||. +++... .+..+...+.+++++++|+++++...++.|.+|+. +++. ..+
T Consensus 193 ~g~---------l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~ 260 (299)
T 2z2n_A 193 DDA---------LWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEY 260 (299)
T ss_dssp TSS---------EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEE
T ss_pred CCC---------EEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEE
Confidence 764 4555556789999999 666433 23334567899999999997777767889999998 5654 344
Q ss_pred ec---CCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 531 TG---NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 531 ~~---~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
.. ...+.++++ ++|+..++.. ++.+..++.+
T Consensus 261 ~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~ 294 (299)
T 2z2n_A 261 PIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLI 294 (299)
T ss_dssp ECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC
T ss_pred eCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcC
Confidence 22 246889999 8888777665 5677777754
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.70 E-value=7.9e-15 Score=144.27 Aligned_cols=265 Identities=11% Similarity=0.053 Sum_probs=177.7
Q ss_pred ceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCC
Q 008467 218 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 297 (564)
Q Consensus 218 ~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg 297 (564)
.|.+++|+|++..++..+.++.++.|.-. ..... ......+.+++|+++|++++++..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~----~~~~~~~~~~~~~~~g~l~~~~~~~~ 66 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTITAE----------------PWLEI----SKKGLQLEGLNFDRQGQLFLLDVFEG 66 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEEECE----------------EEEEE----ESSCCCEEEEEECTTSCEEEEETTTC
T ss_pred ccceeeecCCccceeEEeecccCcccccc----------------eeEEE----eccCccccCcEECCCCCEEEEECCCC
Confidence 46677899988777777888888888311 01111 11234578999999999888888999
Q ss_pred eEEEEECCCceeE-eecCCCCCEEEEEeCCCCCEEEEeeCC----CcEEEEECCCcceeEEEe--ecccCeEEEEcCCCc
Q 008467 298 QARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCD----KTAIVWDVKTEEWKQQFE--FHSGPTLDVDWRNNV 370 (564)
Q Consensus 298 ~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~ 370 (564)
.|.+|+..+.... ....+...+.+++|+|+|+.+++...+ +.|.+||..++.....+. .....+.++.+.++.
T Consensus 67 ~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g 146 (333)
T 2dg1_A 67 NIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG 146 (333)
T ss_dssp EEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS
T ss_pred EEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC
Confidence 9999998654333 333567789999999999888777666 689999998877553332 122345666665554
Q ss_pred eEEEEeC-------CCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEE-EEEeCCCcEEEEeCCC-Ceeee------
Q 008467 371 SFATSST-------DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNMKQ-DKYVH------ 435 (564)
Q Consensus 371 ~~~~~~~-------d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l-as~s~dg~i~iwd~~~-~~~~~------ 435 (564)
.+..+.. .+.|+.++....+.. .+..+...+..++|+|+++.| ++.+.++.|.+|+..+ +..+.
T Consensus 147 ~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~ 225 (333)
T 2dg1_A 147 GFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI 225 (333)
T ss_dssp CEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEE
T ss_pred CEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceE
Confidence 4433333 245666665443332 233333457899999999855 5556688999999863 22221
Q ss_pred --ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCC------CEEEEEEcCCCCEE
Q 008467 436 --DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE------PVYSLAFSPTGEYL 507 (564)
Q Consensus 436 --~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~------~i~~~~~spdg~~l 507 (564)
.+..+ ..+..+++.+++. ++++...++.|.+||. .++.+..+..+.. .+.+++|+|||+.|
T Consensus 226 ~~~~~~~-~~~~~i~~d~~G~---------l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L 294 (333)
T 2dg1_A 226 PYYFTGH-EGPDSCCIDSDDN---------LYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQL 294 (333)
T ss_dssp EEECCSS-SEEEEEEEBTTCC---------EEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEE
T ss_pred EEecCCC-CCCCceEECCCCC---------EEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEE
Confidence 11122 3567788888774 5566667899999998 4676666654432 58999999998777
Q ss_pred EEEeCCC
Q 008467 508 ASGSLDK 514 (564)
Q Consensus 508 asgs~dg 514 (564)
+.++.++
T Consensus 295 ~v~~~~g 301 (333)
T 2dg1_A 295 IICSNDI 301 (333)
T ss_dssp EEEEECG
T ss_pred EEEeCcc
Confidence 6655543
No 185
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.70 E-value=1.3e-14 Score=144.32 Aligned_cols=262 Identities=10% Similarity=0.068 Sum_probs=175.0
Q ss_pred CCCEEEEEe------CCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEee----------CCCcEEEEECCCc
Q 008467 286 EGTLLATGS------YDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVWDVKTE 348 (564)
Q Consensus 286 ~g~~l~sg~------~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D~~v~iwd~~~~ 348 (564)
++.++.+.. .|+.|.+||.. +++...+..+..+ .++|+|+|+++++++ .+++|.+||+.+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 445555443 36899999964 5666667666666 899999999999886 3678999999998
Q ss_pred ceeEEEeecc------cCeEEEEcCCC--ceEEEEeC-CCeEEEEEcCCCceeeE-ecCCCcceEEEEECCCC-CEEEEE
Q 008467 349 EWKQQFEFHS------GPTLDVDWRNN--VSFATSST-DNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTG-SLLASC 417 (564)
Q Consensus 349 ~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~-d~~i~~~~~~~~~~~~~-~~~h~~~i~~v~~~~~~-~~las~ 417 (564)
+.+..+.... .....+.+.++ ..+++... ++.|.+|++.+.+.+.. +... + ...+.+.|++ ..+++.
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSSEEEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCeeEEEE
Confidence 8887776431 22334444433 33344433 68999999999887776 4421 1 2235677776 677889
Q ss_pred eCCCcEEEEeCCC-Ceeeee------cccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEE
Q 008467 418 SDDVTAKIWNMKQ-DKYVHD------LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSL 488 (564)
Q Consensus 418 s~dg~i~iwd~~~-~~~~~~------~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~ 488 (564)
+.||.+.+|+... ++.... +.....++ .+.++|++ . .++..+.++.|.++|+..+.. +..+
T Consensus 170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g--------~-~~~~~~~~~~v~v~d~~~~~~~~~~~~ 239 (361)
T 2oiz_A 170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDK--------D-KAHFVSYYGNVYSADFSGDEVKVDGPW 239 (361)
T ss_dssp ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECS--------S-EEEEEBTTSEEEEEECSSSSCEEEEEE
T ss_pred CCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccC--------C-EEEEEeCCCeEEEEEecCCCceecccc
Confidence 9999999999765 333311 11111111 11112222 1 234456889999999875432 2222
Q ss_pred eCC------C----CCEEEEEEcCCCCEEEEEeC-----------CCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCE
Q 008467 489 NGH------R----EPVYSLAFSPTGEYLASGSL-----------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDK 547 (564)
Q Consensus 489 ~~h------~----~~i~~~~~spdg~~lasgs~-----------dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~ 547 (564)
.-. . .....++|+||++.+.++.. .+.|.+||+.+++.++++.... +..++|+|||++
T Consensus 240 ~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~ 318 (361)
T 2oiz_A 240 SLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNL 318 (361)
T ss_dssp ESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTE
T ss_pred cccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCE
Confidence 110 0 11123789999888776543 3489999999999999998877 999999999999
Q ss_pred EEEEEcCCcEEEEEee
Q 008467 548 IAACFANHTVCVLDFR 563 (564)
Q Consensus 548 la~~~~~~~v~v~~~~ 563 (564)
|+++.. +.|.|||.+
T Consensus 319 l~v~n~-~~v~v~D~~ 333 (361)
T 2oiz_A 319 MLTLDG-GNVNVYDIS 333 (361)
T ss_dssp EEEECS-SCEEEEECS
T ss_pred EEEeCC-CeEEEEECC
Confidence 998876 899999964
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.70 E-value=5.9e-15 Score=160.78 Aligned_cols=244 Identities=12% Similarity=0.076 Sum_probs=168.9
Q ss_pred CCccceEEEEECCCCCEEEEEECCC-----cEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 214 GHTSEVCACAWSPAGSLLASGSGDS-----TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 214 ~h~~~V~~~~~sp~~~~lasgs~D~-----~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
+|...+..++|||||++||.++.++ .|++||+.++... ...+.. ..+..++|+|||+
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~---------~~~~~~---------~~~~~~~wspDg~ 183 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL---------PDVLER---------VKFSCMAWTHDGK 183 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE---------EEEEEE---------ECSCCEEECTTSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC---------cccccC---------cccceEEEEeCCC
Confidence 4556788999999999998876543 8999999876421 001110 1256789999999
Q ss_pred EEEEEeCCCe----------------EEEEECCCce---eEe--ecCCCCCEEEEEeCCCCCEEEEeeC-----CCcEEE
Q 008467 289 LLATGSYDGQ----------------ARIWSTNGDL---KCT--LSKHKGPIFSLKWNKKGDYLLTGSC-----DKTAIV 342 (564)
Q Consensus 289 ~l~sg~~dg~----------------i~vw~~~~~~---~~~--~~~h~~~V~~l~~~~~~~~l~s~s~-----D~~v~i 342 (564)
.|+.++.++. |++|+..+.. ... ...|...+.++.|+|+|++|+.++. +..|.+
T Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~ 263 (710)
T 2xdw_A 184 GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWY 263 (710)
T ss_dssp EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEE
T ss_pred EEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEE
Confidence 9999988766 9999986532 222 2335666889999999999887765 456777
Q ss_pred EECCC------cceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEE
Q 008467 343 WDVKT------EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS 416 (564)
Q Consensus 343 wd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las 416 (564)
||+.+ +.. ....+..+...+.. .|+|+|+.|+.
T Consensus 264 ~d~~~~~~~~~~~~----------------------------------------~~~~l~~~~~~~~~-~~s~dg~~l~~ 302 (710)
T 2xdw_A 264 CDLQQESNGITGIL----------------------------------------KWVKLIDNFEGEYD-YVTNEGTVFTF 302 (710)
T ss_dssp EEGGGSSSSSCSSC----------------------------------------CCEEEECSSSSCEE-EEEEETTEEEE
T ss_pred EECcccccccCCcc----------------------------------------ceEEeeCCCCcEEE-EEeccCCEEEE
Confidence 77754 210 11223333333333 47788887776
Q ss_pred EeCC----CcEEEEeCCCCee--eeecccccc--cEEEEEEccCCCCCCCCCCcEEEEEEeCCCe--EEEEeCCCCeEEE
Q 008467 417 CSDD----VTAKIWNMKQDKY--VHDLREHSK--EIYTIRWSPTGSGTNNPNQQLILASASFDST--VKLWDVELGKLLY 486 (564)
Q Consensus 417 ~s~d----g~i~iwd~~~~~~--~~~~~~~~~--~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~--i~iwd~~~~~~~~ 486 (564)
.+.. +.|.+||+.++.. ...+..|.. .+..+.|++.+ .++++...|+. |.+||+.+|+.+.
T Consensus 303 ~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------~lv~~~~~~g~~~l~~~~~~~g~~~~ 373 (710)
T 2xdw_A 303 KTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN---------FLVLCYLHDVKNTLQLHDLATGALLK 373 (710)
T ss_dssp EECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT---------EEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred EECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC---------EEEEEEEECCEEEEEEEECCCCCEEE
Confidence 6653 3699999887641 244445544 57788888544 36788888885 5667876788778
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEE-e---CCCcEEEEeCCCCe
Q 008467 487 SLNGHREPVYSLAFSPTGEYLASG-S---LDKSMHIWSLKEGK 525 (564)
Q Consensus 487 ~~~~h~~~i~~~~~spdg~~lasg-s---~dg~i~iw~~~~~~ 525 (564)
.+..+...|..++++|++..|+.. + ..++|+.||+.+++
T Consensus 374 ~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 374 IFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 888777778999999999766533 2 35789999998877
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.68 E-value=3.2e-14 Score=137.51 Aligned_cols=259 Identities=14% Similarity=0.097 Sum_probs=166.9
Q ss_pred eEccCCccceEEEEECCCCC-EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 210 TILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 210 ~~l~~h~~~V~~~~~sp~~~-~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
..+..+.....+++|+|+++ +++++..++.|.+|+..++ . .... .....+.+++++++|+
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~--------------~~~~----~~~~~~~~l~~~~dg~ 81 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L--------------SPEM----HPSHHQNGHCLNKQGH 81 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E--------------EEEE----SSCSSEEEEEECTTCC
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e--------------EEEE----CCCCCcceeeECCCCc
Confidence 44555666778999999998 8888889999999997643 1 0111 1235688999999999
Q ss_pred EEEEEeCCCeEEEEEC-CCceeEeecCC----CCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEE
Q 008467 289 LLATGSYDGQARIWST-NGDLKCTLSKH----KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 363 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~-~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 363 (564)
++++...++.|.+|+. .+......... ...+..++++|+|+.+++.+..++...+...... .
T Consensus 82 l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~----~--------- 148 (296)
T 3e5z_A 82 LIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGE----M--------- 148 (296)
T ss_dssp EEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCC----C---------
T ss_pred EEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccccc----c---------
Confidence 8888777899999998 55543332211 1245678899999887773321110000000000 0
Q ss_pred EEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC-CCee---eeeccc
Q 008467 364 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK-QDKY---VHDLRE 439 (564)
Q Consensus 364 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~-~~~~---~~~~~~ 439 (564)
....+.|+.++.. ..+..+..+....+.++|+|+++++++.+.++.|.+|++. ++.. ...+..
T Consensus 149 -----------~~~~~~l~~~~~~--g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~ 215 (296)
T 3e5z_A 149 -----------ELPGRWVFRLAPD--GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTV 215 (296)
T ss_dssp -----------CSSSCEEEEECTT--SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECC
T ss_pred -----------cCCCcEEEEECCC--CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeC
Confidence 0001112222211 1122233445567889999999998888888999999986 4433 222223
Q ss_pred ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEE-cCCCCEEEEEeCCCcEEE
Q 008467 440 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF-SPTGEYLASGSLDKSMHI 518 (564)
Q Consensus 440 ~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~-spdg~~lasgs~dg~i~i 518 (564)
+...+..+++.++|. +.++. ++.|.+||.. ++.+..+..+.. +++++| +|+++.|.+++.++ +.-
T Consensus 216 ~~~~p~~i~~d~~G~---------l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~ 281 (296)
T 3e5z_A 216 EPGKTDGLRVDAGGL---------IWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWS 281 (296)
T ss_dssp SSSCCCSEEEBTTSC---------EEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEE
T ss_pred CCCCCCeEEECCCCC---------EEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEE
Confidence 344556788888764 33333 7899999987 788888877766 899999 69999999888765 556
Q ss_pred EeCCCCeEE
Q 008467 519 WSLKEGKIV 527 (564)
Q Consensus 519 w~~~~~~~~ 527 (564)
++.++.++.
T Consensus 282 ~~~~~~~~~ 290 (296)
T 3e5z_A 282 IETNVRGLE 290 (296)
T ss_dssp EECSCCBCC
T ss_pred EEccccccc
Confidence 677666543
No 188
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.65 E-value=3.4e-15 Score=162.24 Aligned_cols=245 Identities=10% Similarity=0.056 Sum_probs=163.8
Q ss_pred cCCccceEEEEECCCCCEEE-----EEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467 213 EGHTSEVCACAWSPAGSLLA-----SGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 287 (564)
Q Consensus 213 ~~h~~~V~~~~~sp~~~~la-----sgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 287 (564)
.+|...+..++|||||++|| +|+.+..|++||+.++..... .... ......++|+|||
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~---------------~~~~--~~~~~~~~wspDg 179 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV---------------DVIE--GGKYATPKWTPDS 179 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS---------------CCBS--CCTTCCCEECTTS
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC---------------cccC--cccccceEEecCC
Confidence 35767789999999999998 455567999999988753200 0000 0112568999999
Q ss_pred CEEEEEeCCCe-------------EEEEECCCce-----eEeecCCCCCEEEEEeCCCCCEEEEeeCCC----cEEEEEC
Q 008467 288 TLLATGSYDGQ-------------ARIWSTNGDL-----KCTLSKHKGPIFSLKWNKKGDYLLTGSCDK----TAIVWDV 345 (564)
Q Consensus 288 ~~l~sg~~dg~-------------i~vw~~~~~~-----~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~----~v~iwd~ 345 (564)
+.|+.++.|.. |++|+..+.. ......|...+.++.|+|+|++|+.++.++ .|.+||.
T Consensus 180 ~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~ 259 (695)
T 2bkl_A 180 KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRP 259 (695)
T ss_dssp SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECT
T ss_pred CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcC
Confidence 99999998876 9999986432 223344667889999999999998887766 6777776
Q ss_pred CCcceeEEEeecccCeEEEEcCCCceEEEEe---CCCeEEEEEcCCCce--eeEec-CC-CcceEEEEECCCCCEEEEEe
Q 008467 346 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSS---TDNMIYVCKIGENRP--IKTFA-GH-QGEVNCVKWDPTGSLLASCS 418 (564)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~~~~~~~~~~--~~~~~-~h-~~~i~~v~~~~~~~~las~s 418 (564)
.++.+.. +..+........|.++..++.+. .++.|++|++..+.+ ...+. .+ ...+..++|+ ++.++++..
T Consensus 260 ~~~~~~~-l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~ 337 (695)
T 2bkl_A 260 GEKDFRL-LVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYL 337 (695)
T ss_dssp TCSSCEE-EEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEE
T ss_pred CCCceEE-eecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEE
Confidence 6665443 33333334444455555333333 357899999876543 23333 33 4467888888 778899999
Q ss_pred CCCcEEEEeCC-CCeeeeecccc-cccEEEEEEccCCCCCCCCCCcEEEEEEe---CCCeEEEEeCCCCeE
Q 008467 419 DDVTAKIWNMK-QDKYVHDLREH-SKEIYTIRWSPTGSGTNNPNQQLILASAS---FDSTVKLWDVELGKL 484 (564)
Q Consensus 419 ~dg~i~iwd~~-~~~~~~~~~~~-~~~i~~i~~~p~~~~~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~ 484 (564)
.|+..+||.+. .++....+..+ ...+..+.++|++. .++++.+ ..++|++||+.+++.
T Consensus 338 ~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~--------~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 338 KDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLD--------DAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp ETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCS--------EEEEEEEETTEEEEEEEEETTTCCE
T ss_pred ECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCC--------EEEEEEcCCCCCCEEEEEECCCCcE
Confidence 99999888654 34445555544 45566666666543 2333333 247899999988764
No 189
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.64 E-value=8.8e-15 Score=158.97 Aligned_cols=238 Identities=11% Similarity=-0.007 Sum_probs=157.4
Q ss_pred CCCeEEEEECCCCCEEEE-----EeCCCeEEEEECCCceeEeecCCCCCE--EEEEeCCCCCEEEEeeCCCc--------
Q 008467 275 SKDVTTLDWNGEGTLLAT-----GSYDGQARIWSTNGDLKCTLSKHKGPI--FSLKWNKKGDYLLTGSCDKT-------- 339 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~s-----g~~dg~i~vw~~~~~~~~~~~~h~~~V--~~l~~~~~~~~l~s~s~D~~-------- 339 (564)
...+..++|||||++||. |+.+..|++|+..+..... ..+...+ .+++|+|+|+.|+.++.|..
T Consensus 120 ~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~ 198 (695)
T 2bkl_A 120 TVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDER 198 (695)
T ss_dssp CEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred CEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEecCCCCCccccC
Confidence 346889999999999994 4445689999987644320 1122222 67899999999999988765
Q ss_pred -----EEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEE
Q 008467 340 -----AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL 414 (564)
Q Consensus 340 -----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l 414 (564)
|++|++.++.... ..+.....|...+.++.|+|||++|
T Consensus 199 ~~~~~v~~~~l~t~~~~~-------------------------------------~lv~~~~~~~~~~~~~~~SpDG~~l 241 (695)
T 2bkl_A 199 PGYTTIRYHTLGTEPSKD-------------------------------------TVVHERTGDPTTFLQSDLSRDGKYL 241 (695)
T ss_dssp GGGCEEEEEETTSCGGGC-------------------------------------EEEECCCCCTTCEEEEEECTTSCCE
T ss_pred CCCCEEEEEECCCCchhc-------------------------------------eEEEecCCCCEEEEEEEECCCCCEE
Confidence 6666655432100 0111223345567899999999998
Q ss_pred EEEeCCC----cEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEe---CCCeEEEEeCCCCeE--E
Q 008467 415 ASCSDDV----TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS---FDSTVKLWDVELGKL--L 485 (564)
Q Consensus 415 as~s~dg----~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~--~ 485 (564)
+.++.++ .|.+|+..++. ...+..+...+....| +++ . ++++.. .++.|.+||+.++.. .
T Consensus 242 ~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g--------~-l~~~s~~~~~~~~l~~~d~~~~~~~~~ 310 (695)
T 2bkl_A 242 FVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKD--------R-FYVLTDEGAPRQRVFEVDPAKPARASW 310 (695)
T ss_dssp EEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETT--------E-EEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred EEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCC--------c-EEEEECCCCCCCEEEEEeCCCCCccCC
Confidence 8877665 66677655443 3344455555556556 443 2 444444 358999999987652 2
Q ss_pred EEEeCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEEEEec--CCCEEEEEEccCCCEEEEEEcC----Cc
Q 008467 486 YSLNGH--REPVYSLAFSPTGEYLASGSLDKSMHIWSLK-EGKIVKTYTG--NGGIFEVCWNKEGDKIAACFAN----HT 556 (564)
Q Consensus 486 ~~~~~h--~~~i~~~~~spdg~~lasgs~dg~i~iw~~~-~~~~~~~~~~--~~~i~~~~w~~~g~~la~~~~~----~~ 556 (564)
..+..+ ...+..++|+ ++.+++++..|+..+||.+. +|+.+..+.. .+.+..++|+|+|+.|++.+.+ ++
T Consensus 311 ~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~ 389 (695)
T 2bkl_A 311 KEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQ 389 (695)
T ss_dssp EEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEE
T ss_pred eEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence 233333 4568889998 77888999999988888664 4655555543 3457788999999988866554 46
Q ss_pred EEEEEe
Q 008467 557 VCVLDF 562 (564)
Q Consensus 557 v~v~~~ 562 (564)
|.+||+
T Consensus 390 v~~~d~ 395 (695)
T 2bkl_A 390 IYKTSV 395 (695)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 777775
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.63 E-value=3.9e-13 Score=131.87 Aligned_cols=281 Identities=11% Similarity=0.034 Sum_probs=191.7
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecC
Q 008467 236 GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSK 314 (564)
Q Consensus 236 ~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~ 314 (564)
.+++|.+||..+++...... ....+ .........+.+. ++++.++...++.|.+||.. ++....+.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~---------~~~n~--~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~- 81 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVF---------YRANG--FKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT- 81 (328)
T ss_dssp CCBEEEEEETTTTEEECSHH---------HHHHS--SCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-
T ss_pred CCceEEEEECCCCEEhhhhH---------hhhcC--cccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-
Confidence 48899999988764321100 00000 0111235666664 45566666678999999986 55555664
Q ss_pred CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeeccc-----CeEEEEcCCCceEEEEe-CCCeEEEEEcCC
Q 008467 315 HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-----PTLDVDWRNNVSFATSS-TDNMIYVCKIGE 388 (564)
Q Consensus 315 h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~d~~i~~~~~~~ 388 (564)
.......+++++++..+++...++.|.+||+.+++....+..... ....+.+.++..+++.. .++.|.+++..+
T Consensus 82 ~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t 161 (328)
T 3dsm_A 82 GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTET 161 (328)
T ss_dssp CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTT
T ss_pred CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCC
Confidence 345678999999884444444899999999999988777665430 22234444555666655 488999999998
Q ss_pred CceeeEecCCCcceEEEEECCCCCEEEEEeCC----------CcEEEEeCCCCeeeeecccc-cccEEEEEEccCCCCCC
Q 008467 389 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD----------VTAKIWNMKQDKYVHDLREH-SKEIYTIRWSPTGSGTN 457 (564)
Q Consensus 389 ~~~~~~~~~h~~~i~~v~~~~~~~~las~s~d----------g~i~iwd~~~~~~~~~~~~~-~~~i~~i~~~p~~~~~~ 457 (564)
.+.+..+... .....++++|+|++++++..+ +.|.+||..+++....+... ......++++|++.
T Consensus 162 ~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~--- 237 (328)
T 3dsm_A 162 DKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRD--- 237 (328)
T ss_dssp TEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSC---
T ss_pred CeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCC---
Confidence 8877766542 235678999999988877665 78999999988877665432 23568999999765
Q ss_pred CCCCcEEEEEEeCCCeEEEEeCCCCeEEEE--EeCCCCCEEEEEEcC-CCCEEEEE----eCCCcEEEEeCCCCeEEEEE
Q 008467 458 NPNQQLILASASFDSTVKLWDVELGKLLYS--LNGHREPVYSLAFSP-TGEYLASG----SLDKSMHIWSLKEGKIVKTY 530 (564)
Q Consensus 458 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~h~~~i~~~~~sp-dg~~lasg----s~dg~i~iw~~~~~~~~~~~ 530 (564)
.|..+.. .|.+||..+++.... +.........++++| ++..+++. ..++.|.+|+.. |++++++
T Consensus 238 ------~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 238 ------TLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp ------EEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred ------EEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 3444433 899999988775321 121235678999999 56666666 578999999998 9999988
Q ss_pred ecCCCEEEEEEc
Q 008467 531 TGNGGIFEVCWN 542 (564)
Q Consensus 531 ~~~~~i~~~~w~ 542 (564)
........++|-
T Consensus 309 ~~G~~P~~~~~~ 320 (328)
T 3dsm_A 309 YVGIIPGAFCWK 320 (328)
T ss_dssp EEEESEEEEEEE
T ss_pred EeccCcceEEEe
Confidence 765566677663
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.63 E-value=1.5e-13 Score=131.03 Aligned_cols=213 Identities=18% Similarity=0.141 Sum_probs=162.2
Q ss_pred CCCCEEEEEeCCCeEEEEEC-CCceeEeecCCC-CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeE
Q 008467 285 GEGTLLATGSYDGQARIWST-NGDLKCTLSKHK-GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 362 (564)
Q Consensus 285 ~~g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 362 (564)
..+++|++++.++.|.+||. +|+.+..+..+. ..+.++.+.|+|+.++ +.++.|..||. +++.+..+..
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~------ 73 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA------ 73 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC------
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC------
Confidence 34688999999999999998 788888887766 4678899999999888 45788999998 6665443321
Q ss_pred EEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCeeeeeccc--
Q 008467 363 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDKYVHDLRE-- 439 (564)
Q Consensus 363 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg~i~iwd~~~~~~~~~~~~-- 439 (564)
++...+.++.+.++|+++++.+. ++.+..+|. +++.+..+..
T Consensus 74 ----------------------------------~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~ 118 (276)
T 3no2_A 74 ----------------------------------PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFET 118 (276)
T ss_dssp ----------------------------------CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECC
T ss_pred ----------------------------------CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccC
Confidence 01124567888999999988877 777777775 5555544431
Q ss_pred ----ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 008467 440 ----HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS 515 (564)
Q Consensus 440 ----~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~ 515 (564)
+......+...++|. ++++.+.++.|..||.. |+.++++... ..+.++.+.++|+.+++++.+++
T Consensus 119 ~~~~~~~~~~~v~~~~~G~---------~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~ 187 (276)
T 3no2_A 119 GIERPHAQFRQINKNKKGN---------YLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHC 187 (276)
T ss_dssp SCSSGGGSCSCCEECTTSC---------EEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSE
T ss_pred CCCcccccccCceECCCCC---------EEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCe
Confidence 112233344455543 67888899999999998 9999998865 34567888999999999998999
Q ss_pred EEEEeCCCCeEEEEEecCC-------CEEEEEEccCCCEEEEEE
Q 008467 516 MHIWSLKEGKIVKTYTGNG-------GIFEVCWNKEGDKIAACF 552 (564)
Q Consensus 516 i~iw~~~~~~~~~~~~~~~-------~i~~~~w~~~g~~la~~~ 552 (564)
|..+|..+|+++..+.... .+..++..++|+.+++.+
T Consensus 188 v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 188 FVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 9999999999999986431 167888999999998886
No 192
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.63 E-value=2.3e-13 Score=129.72 Aligned_cols=242 Identities=14% Similarity=0.147 Sum_probs=175.3
Q ss_pred CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 008467 227 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG 306 (564)
Q Consensus 227 ~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~ 306 (564)
.+++|++++.|+.|.+||..+++.. ...... ....+.++.++|+|++++ +.++.|..|+.+|
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~-------------w~~~~~---~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G 65 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIV-------------WEYPLE---KGWECNSVAATKAGEILF--SYSKGAKMITRDG 65 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEE-------------EEEECC---TTCCCCEEEECTTSCEEE--ECBSEEEEECTTS
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEE-------------EEeCCC---ccCCCcCeEECCCCCEEE--eCCCCEEEECCCC
Confidence 4578999999999999998776521 111111 113578889999999998 4578899999988
Q ss_pred ceeEeecCC-CCCEEEEEeCCCCCEEEEeeC-CCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEE
Q 008467 307 DLKCTLSKH-KGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVC 384 (564)
Q Consensus 307 ~~~~~~~~h-~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 384 (564)
+.+..+..+ ...+.++.+.++|+.+++.+. ++.+..+|. +++.+..+...
T Consensus 66 ~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~--------------------------- 117 (276)
T 3no2_A 66 RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFE--------------------------- 117 (276)
T ss_dssp CEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEEC---------------------------
T ss_pred CEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEecc---------------------------
Confidence 888877765 357889999999999999887 777777775 55544433211
Q ss_pred EcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEE
Q 008467 385 KIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI 464 (564)
Q Consensus 385 ~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~ 464 (564)
.. ..++......+++.++|+++++.+.++.|.+||.. ++.+..+.... ..+++...+++. +
T Consensus 118 ---~~-----~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~---------~ 178 (276)
T 3no2_A 118 ---TG-----IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGD---------C 178 (276)
T ss_dssp ---CS-----CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSC---------E
T ss_pred ---CC-----CCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCC---------E
Confidence 00 01111234456778999999999999999999988 88887776543 345566666654 6
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEEEeCCC------CCEEEEEEcCCCCEEEEEeC--C------CcEEEEeC-CCCeEEEE
Q 008467 465 LASASFDSTVKLWDVELGKLLYSLNGHR------EPVYSLAFSPTGEYLASGSL--D------KSMHIWSL-KEGKIVKT 529 (564)
Q Consensus 465 l~s~s~dg~i~iwd~~~~~~~~~~~~h~------~~i~~~~~spdg~~lasgs~--d------g~i~iw~~-~~~~~~~~ 529 (564)
+++++.++.|..+|..+|+.++++..+. ..+..++..++|..+++... . +..+++.+ .+|+++.+
T Consensus 179 ~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~ 258 (276)
T 3no2_A 179 LVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQ 258 (276)
T ss_dssp EEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEE
T ss_pred EEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEE
Confidence 7777778899999999999999986432 22788999999999988742 1 13345555 58889888
Q ss_pred EecC
Q 008467 530 YTGN 533 (564)
Q Consensus 530 ~~~~ 533 (564)
|...
T Consensus 259 ~~~~ 262 (276)
T 3no2_A 259 LNDK 262 (276)
T ss_dssp ECCT
T ss_pred ecCc
Confidence 8654
No 193
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.63 E-value=1e-13 Score=131.83 Aligned_cols=235 Identities=7% Similarity=-0.038 Sum_probs=160.5
Q ss_pred CEEEEEeCCCCCEEE-EeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEe
Q 008467 318 PIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTF 395 (564)
Q Consensus 318 ~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~ 395 (564)
...+++++++|+.++ +.+.++.|.+||..+.............+..+.+..+ ..+++.. ++.|++|+...... ..+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eee
Confidence 567899999998777 5577899999997665432211112123445555433 3445544 88899998765443 223
Q ss_pred c-CCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeE
Q 008467 396 A-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV 474 (564)
Q Consensus 396 ~-~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i 474 (564)
. .....+.+++++++|+++++...++.|.+|+..+.............+..+++.|++. ++++...++.|
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~---------l~v~~~~~~~i 173 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN---------VYVTDTDNNRV 173 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC---------EEEEEGGGTEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC---------EEEEECCCCEE
Confidence 2 2335688999999999888888889999998665443322222223457788887664 55666667899
Q ss_pred EEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCCEEEEEEccCCCEEEEEEc
Q 008467 475 KLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFA 553 (564)
Q Consensus 475 ~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~g~~la~~~~ 553 (564)
.+||............+...+..|+++++|.++++...++.|.+|+............ ...+.+++++++|+.+++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 253 (270)
T 1rwi_B 174 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRG 253 (270)
T ss_dssp EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred EEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECC
Confidence 9999987665443333435689999999998888887888999999876543322112 245899999999998888889
Q ss_pred CCcEEEEEee
Q 008467 554 NHTVCVLDFR 563 (564)
Q Consensus 554 ~~~v~v~~~~ 563 (564)
++.|.+|+..
T Consensus 254 ~~~v~~~~~~ 263 (270)
T 1rwi_B 254 NDRVVKLTSL 263 (270)
T ss_dssp GTEEEEECCC
T ss_pred CCEEEEEcCC
Confidence 9999999764
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.62 E-value=1.1e-13 Score=131.53 Aligned_cols=239 Identities=8% Similarity=-0.019 Sum_probs=164.9
Q ss_pred CeEEEEECCCCCEEE-EEeCCCeEEEEECCCceeEee-cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467 277 DVTTLDWNGEGTLLA-TGSYDGQARIWSTNGDLKCTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 354 (564)
Q Consensus 277 ~V~~l~~s~~g~~l~-sg~~dg~i~vw~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 354 (564)
...+++++++|++++ +...++.|.+|+..+.....+ ..+...+.+++++++|+.+++.. ++.|.+||..+.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 578899999999777 547789999998765443332 22334678899999998666655 889999998765433211
Q ss_pred eecccCeEEEEcCC-CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 008467 355 EFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 433 (564)
Q Consensus 355 ~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~ 433 (564)
.........+.+.. ...+++...++.|++++................+.+++++++|+++++...++.|.+||......
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 183 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence 11113455565543 34566666778898886654433322223334678899999999888887888999999887665
Q ss_pred eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC
Q 008467 434 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 513 (564)
Q Consensus 434 ~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d 513 (564)
......+...+..+++.++|. ++++...++.|.+||............+...+.+++++|+|+++++...+
T Consensus 184 ~~~~~~~~~~p~~i~~d~~g~---------l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 254 (270)
T 1rwi_B 184 VVLPFTDITAPWGIAVDEAGT---------VYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGN 254 (270)
T ss_dssp EECCCSSCCSEEEEEECTTCC---------EEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGG
T ss_pred EeecccCCCCceEEEECCCCC---------EEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCC
Confidence 433333335678899988764 56666678899999987554333222333568999999999988998999
Q ss_pred CcEEEEeCCCCe
Q 008467 514 KSMHIWSLKEGK 525 (564)
Q Consensus 514 g~i~iw~~~~~~ 525 (564)
++|.+|+....+
T Consensus 255 ~~v~~~~~~~~~ 266 (270)
T 1rwi_B 255 DRVVKLTSLEHH 266 (270)
T ss_dssp TEEEEECCCGGG
T ss_pred CEEEEEcCCCcc
Confidence 999999987544
No 195
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.60 E-value=1.3e-11 Score=118.82 Aligned_cols=270 Identities=10% Similarity=0.055 Sum_probs=188.4
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeE-eecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467 276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 354 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 354 (564)
..+.++++.++|++.++...++.|.+|+..+.... .+..+...+.++.+.++|+.+++...++.|..||.. ++.. .+
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~ 97 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EY 97 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EE
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-Ee
Confidence 46889999999998888778899999998754433 223344678999999999888877778899999987 5543 23
Q ss_pred ee--cccCeEEEEcC-CCceEEEEeCCCeEEEEEcCCCcee-eEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008467 355 EF--HSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPI-KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 430 (564)
Q Consensus 355 ~~--~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~-~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~ 430 (564)
.. ....+..+... +...+++...++.|+.++.. ++.. ..+......+.++++++++++.++...++.|..|+. +
T Consensus 98 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~ 175 (300)
T 2qc5_A 98 PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-T 175 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-C
Confidence 22 22345555554 34455666667888888876 3332 222334457889999999998777777889999998 4
Q ss_pred Ceeee-ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEE-EeCCCCCEEEEEEcCCCCEEE
Q 008467 431 DKYVH-DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTGEYLA 508 (564)
Q Consensus 431 ~~~~~-~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~i~~~~~spdg~~la 508 (564)
+.... .+..+...+..+++.+++. +.++....+.|.+||. +++.... +..+...+.+++++++|++++
T Consensus 176 g~~~~~~~~~~~~~~~~i~~d~~g~---------l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v 245 (300)
T 2qc5_A 176 GKLEEYPLPTNAAAPVGITSGNDGA---------LWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWF 245 (300)
T ss_dssp CCEEEEECSSTTCCEEEEEECTTSS---------EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEE
T ss_pred CcEEEeeCCCCCCCcceEEECCCCC---------EEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEE
Confidence 44332 2223345678888888764 4455555678999998 4554332 333456689999999999777
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEec---CCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 509 SGSLDKSMHIWSLKEGKIVKTYTG---NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 509 sgs~dg~i~iw~~~~~~~~~~~~~---~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
+...++.|..|+. +++.. .+.. ...+.+++.+++|+..++.. + .|..+|.+
T Consensus 246 ~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 246 TEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp EETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred eccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 7767789999998 55543 3322 34578899999998766665 5 78777754
No 196
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.60 E-value=7.4e-13 Score=128.77 Aligned_cols=239 Identities=9% Similarity=0.106 Sum_probs=162.8
Q ss_pred CCeEEEEECCCCCEEEE-------EeCCCeEEEEECCCceeEeecC-----CCCCEEEEEeCCC-CCEEEEeeCCCcEEE
Q 008467 276 KDVTTLDWNGEGTLLAT-------GSYDGQARIWSTNGDLKCTLSK-----HKGPIFSLKWNKK-GDYLLTGSCDKTAIV 342 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~s-------g~~dg~i~vw~~~~~~~~~~~~-----h~~~V~~l~~~~~-~~~l~s~s~D~~v~i 342 (564)
....+++|+++|.++++ +..++.|.+|+........+.. +...+.++.++++ |+.+++ +..+.|.+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~l~~ 96 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLGLLV 96 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCCEEE
Confidence 34678999999998888 6778999999964333333322 5567899999999 654444 44457888
Q ss_pred EECCCcceeEE-EeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCC-
Q 008467 343 WDVKTEEWKQQ-FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD- 420 (564)
Q Consensus 343 wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~d- 420 (564)
||.. ++.... .... . ......+.+++++++|+++++...+
T Consensus 97 ~d~~-g~~~~~~~~~~------------------------------~-------~~~~~~~~~i~~d~~g~l~v~~~~~~ 138 (314)
T 1pjx_A 97 VQTD-GTFEEIAKKDS------------------------------E-------GRRMQGCNDCAFDYEGNLWITAPAGE 138 (314)
T ss_dssp EETT-SCEEECCSBCT------------------------------T-------SCBCBCCCEEEECTTSCEEEEECBCB
T ss_pred EeCC-CCEEEEEeccC------------------------------C-------CccccCCcCEEECCCCCEEEEecCcc
Confidence 9887 543211 0000 0 0012346789999999988777655
Q ss_pred --------------CcEEEEeCCCCeeeeecccccccEEEEEEc----cCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-C
Q 008467 421 --------------VTAKIWNMKQDKYVHDLREHSKEIYTIRWS----PTGSGTNNPNQQLILASASFDSTVKLWDVE-L 481 (564)
Q Consensus 421 --------------g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~----p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~ 481 (564)
+.|..|+.. ++.. .+..+......++|+ |++. .++++...++.|.+||+. .
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~~~~~i~~~~~~d~dg~--------~l~v~~~~~~~i~~~~~~~~ 208 (314)
T 1pjx_A 139 VAPADYTRSMQEKFGSIYCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDGRPY--------QLIVAETPTKKLWSYDIKGP 208 (314)
T ss_dssp CTTSCCCBTTSSSCEEEEEECTT-SCEE-EEEEEESSEEEEEEEECTTSCEE--------EEEEEETTTTEEEEEEEEET
T ss_pred cccccccccccCCCCeEEEECCC-CCEE-EeccCCCCcceEEEecccCCCCC--------EEEEEECCCCeEEEEECCCC
Confidence 567777765 4332 222333446788888 7653 245555678999999976 4
Q ss_pred CeE-----EEEEeCCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEEEE-Ec
Q 008467 482 GKL-----LYSLNGHR-EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAAC-FA 553 (564)
Q Consensus 482 ~~~-----~~~~~~h~-~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~-~~ 553 (564)
++. ...+..+. ..+..++++++|+++++...++.|.+|+..+++.+..+... ..+.+++|+++|+.|.++ ..
T Consensus 209 g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~ 288 (314)
T 1pjx_A 209 AKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE 288 (314)
T ss_dssp TEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred CccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC
Confidence 542 23334343 55789999999999998888899999999878777666554 568999999999966555 44
Q ss_pred CCcEEEEEee
Q 008467 554 NHTVCVLDFR 563 (564)
Q Consensus 554 ~~~v~v~~~~ 563 (564)
++.|.+|++.
T Consensus 289 ~~~l~~~~~~ 298 (314)
T 1pjx_A 289 NNAVWKFEWQ 298 (314)
T ss_dssp TTEEEEEECS
T ss_pred CCeEEEEeCC
Confidence 5788888753
No 197
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.58 E-value=3.1e-13 Score=147.79 Aligned_cols=236 Identities=14% Similarity=0.094 Sum_probs=155.6
Q ss_pred CCCCEEEEEeCCCCCEEEEeeCC-----CcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCC----------
Q 008467 315 HKGPIFSLKWNKKGDYLLTGSCD-----KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDN---------- 379 (564)
Q Consensus 315 h~~~V~~l~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---------- 379 (564)
|...+.+++|||+|++|+.++.+ .+|++||+.+++.... .........+.|.++..|+.++.+.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTTSEEEEEECCCC--------C
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECCCEEEEEEecCcccccccccC
Confidence 33468899999999999876654 4699999999987653 1111122467787665565555443
Q ss_pred ----eEEEEEcCCCce--eeEecC--CCcceEEEEECCCCCEEEEEeCCC-----cEEEEeCCCC--eeeeecccccccE
Q 008467 380 ----MIYVCKIGENRP--IKTFAG--HQGEVNCVKWDPTGSLLASCSDDV-----TAKIWNMKQD--KYVHDLREHSKEI 444 (564)
Q Consensus 380 ----~i~~~~~~~~~~--~~~~~~--h~~~i~~v~~~~~~~~las~s~dg-----~i~iwd~~~~--~~~~~~~~~~~~i 444 (564)
.|++|+++++.. ...+.. +...+..+.|+|||++|+..+.++ .|.+||+.++ .+...+..+...+
T Consensus 240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 319 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQ 319 (741)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSC
T ss_pred CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCce
Confidence 388999877652 233333 334588999999999988777544 7999998776 3134454454444
Q ss_pred EEEEEccCCCCCCCCCCcEEEEEEeC----CCeEEEEeCCCC--eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 008467 445 YTIRWSPTGSGTNNPNQQLILASASF----DSTVKLWDVELG--KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHI 518 (564)
Q Consensus 445 ~~i~~~p~~~~~~~~~~~~~l~s~s~----dg~i~iwd~~~~--~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~i 518 (564)
....+ |++. .|+..+. ++.|.+||+.++ .....+..+...+..++|+ ++.++++...|+..+|
T Consensus 320 ~~~~~-~dg~---------~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 388 (741)
T 1yr2_A 320 WDFVD-GVGD---------QLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQV 388 (741)
T ss_dssp EEEEE-EETT---------EEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEE
T ss_pred EEEEe-ccCC---------EEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 44433 6654 2333333 456999999874 3333334444556778887 6677888888998777
Q ss_pred EeCC-CCeEEEEEec--CCCEEEEEEccCCCEEEEEEcC----CcEEEEEe
Q 008467 519 WSLK-EGKIVKTYTG--NGGIFEVCWNKEGDKIAACFAN----HTVCVLDF 562 (564)
Q Consensus 519 w~~~-~~~~~~~~~~--~~~i~~~~w~~~g~~la~~~~~----~~v~v~~~ 562 (564)
|.+. +|+.+..+.. .+.+..++|+|+|+.|+..+.+ +++.+||+
T Consensus 389 ~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 389 LAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp EEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred EEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 7654 4665665553 4568899999999988766543 46777775
No 198
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.58 E-value=1.1e-12 Score=128.67 Aligned_cols=253 Identities=9% Similarity=-0.011 Sum_probs=172.5
Q ss_pred CCCeEEEEECCCc-eeEeec------CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc-
Q 008467 295 YDGQARIWSTNGD-LKCTLS------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW- 366 (564)
Q Consensus 295 ~dg~i~vw~~~~~-~~~~~~------~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~- 366 (564)
.++.|.++|.... ....+. ........+.+. .+..+++...+++|.+||..+++.+..+.. ......+.+
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEe
Confidence 3789999998643 332221 122345677774 344555666679999999999998887743 334555666
Q ss_pred CCCceEEEEeCCCeEEEEEcCCCceeeEecCCC-----cceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCeeeeecccc
Q 008467 367 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-----GEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKYVHDLREH 440 (564)
Q Consensus 367 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-----~~i~~v~~~~~~~~las~s-~dg~i~iwd~~~~~~~~~~~~~ 440 (564)
.++..+++...++.|.+++..+.+....+.... .....+++ .+++++++.. .++.|.+||..+++.+..+...
T Consensus 93 ~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g 171 (328)
T 3dsm_A 93 SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG 171 (328)
T ss_dssp ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS
T ss_pred CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC
Confidence 445555555578999999999887766655322 14556777 3455555544 4889999999998877766542
Q ss_pred cccEEEEEEccCCCCCCCCCCcEEEEEEeCC----------CeEEEEeCCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEE
Q 008467 441 SKEIYTIRWSPTGSGTNNPNQQLILASASFD----------STVKLWDVELGKLLYSLNGH-REPVYSLAFSPTGEYLAS 509 (564)
Q Consensus 441 ~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~h-~~~i~~~~~spdg~~las 509 (564)
. ....+.++|++. +++++..+ +.|.+||..+++....+... ......++|+||+++|.+
T Consensus 172 ~-~p~~i~~~~dG~---------l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv 241 (328)
T 3dsm_A 172 I-QPTSLVMDKYNK---------MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYW 241 (328)
T ss_dssp S-CBCCCEECTTSE---------EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEE
T ss_pred C-CccceEEcCCCC---------EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEE
Confidence 2 235667777653 44444443 78999999999887766532 235799999999999887
Q ss_pred EeCCCcEEEEeCCCCeEEEE--Eec-CCCEEEEEEcc-CCCEEEEE----EcCCcEEEEEe
Q 008467 510 GSLDKSMHIWSLKEGKIVKT--YTG-NGGIFEVCWNK-EGDKIAAC----FANHTVCVLDF 562 (564)
Q Consensus 510 gs~dg~i~iw~~~~~~~~~~--~~~-~~~i~~~~w~~-~g~~la~~----~~~~~v~v~~~ 562 (564)
+.. .|.+||..++++... ... ......++++| +|+..++. ..++.|.+||.
T Consensus 242 ~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 242 INN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP 300 (328)
T ss_dssp ESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred Ecc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence 765 899999998876421 111 24588999999 45555665 56788999875
No 199
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.57 E-value=9e-12 Score=130.39 Aligned_cols=266 Identities=13% Similarity=0.113 Sum_probs=189.7
Q ss_pred CCCCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC--CcceeEEEeecccCe
Q 008467 285 GEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK--TEEWKQQFEFHSGPT 361 (564)
Q Consensus 285 ~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~--~~~~~~~~~~~~~~~ 361 (564)
+.+.++++...++.|.++|... +....+.. ...+.++.|+|+|+++++++.|+.|.+||+. +++.+..+..... .
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-A 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-E
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-C
Confidence 3455677778889999999864 45555543 3356789999999999999999999999996 7777766655333 3
Q ss_pred EEEEcC-----C-CceEEEEeCCCeEEEEEcCCCceeeEecC----------C-CcceEEEEECCCCCE-EEEEeCCCcE
Q 008467 362 LDVDWR-----N-NVSFATSSTDNMIYVCKIGENRPIKTFAG----------H-QGEVNCVKWDPTGSL-LASCSDDVTA 423 (564)
Q Consensus 362 ~~~~~~-----~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~----------h-~~~i~~v~~~~~~~~-las~s~dg~i 423 (564)
..+.+. + ...+++...++.+.++|..+.+++..+.. | ...+..+..++++.. +++...+|.|
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v 322 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 322 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence 445554 2 34556677789999999988888776542 1 125778888888665 5556678999
Q ss_pred EEEeCCCCeee--eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC-----CCC-CE
Q 008467 424 KIWNMKQDKYV--HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-----HRE-PV 495 (564)
Q Consensus 424 ~iwd~~~~~~~--~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----h~~-~i 495 (564)
.++|....... ..+ ........+.|+|++. ++++++..++.|.++|+.+++.+..+.- |.. .+
T Consensus 323 ~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr--------~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~ 393 (567)
T 1qks_A 323 LLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHR--------YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGA 393 (567)
T ss_dssp EEEETTCSSEEEEEEE-ECCSSEEEEEECTTSC--------EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCE
T ss_pred EEEecCCCccceeeee-eccccccCceECCCCC--------EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccce
Confidence 99998765322 222 2334566788998875 4566666789999999999998776653 321 22
Q ss_pred EEEEEcCCC-CEEEEEe-CCCcEEEEeCCC-------CeEEEEEecCC-CEEEEEEccCCCEEEEEEc-------CCcEE
Q 008467 496 YSLAFSPTG-EYLASGS-LDKSMHIWSLKE-------GKIVKTYTGNG-GIFEVCWNKEGDKIAACFA-------NHTVC 558 (564)
Q Consensus 496 ~~~~~spdg-~~lasgs-~dg~i~iw~~~~-------~~~~~~~~~~~-~i~~~~w~~~g~~la~~~~-------~~~v~ 558 (564)
. + ++|++ ..++++. .++.|.+++..+ .+.+++....+ +-..+..+|+|++|.+... ..+|.
T Consensus 394 ~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~ 471 (567)
T 1qks_A 394 N-F-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVA 471 (567)
T ss_dssp E-E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEE
T ss_pred e-e-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEE
Confidence 2 2 68884 4555554 468999999988 67888887643 3356889999999998763 34899
Q ss_pred EEEee
Q 008467 559 VLDFR 563 (564)
Q Consensus 559 v~~~~ 563 (564)
|||+.
T Consensus 472 v~d~~ 476 (567)
T 1qks_A 472 VFDIK 476 (567)
T ss_dssp EEEGG
T ss_pred EEECC
Confidence 99974
No 200
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.56 E-value=2e-11 Score=121.54 Aligned_cols=246 Identities=9% Similarity=-0.059 Sum_probs=156.0
Q ss_pred EEEECCCCCEEEEEe----------CCCeEEEEECCC-ceeEeecCC-------CCCEEEEEeCCCCCEEEEeeC--CCc
Q 008467 280 TLDWNGEGTLLATGS----------YDGQARIWSTNG-DLKCTLSKH-------KGPIFSLKWNKKGDYLLTGSC--DKT 339 (564)
Q Consensus 280 ~l~~s~~g~~l~sg~----------~dg~i~vw~~~~-~~~~~~~~h-------~~~V~~l~~~~~~~~l~s~s~--D~~ 339 (564)
.+++||||++++++. .++.|.+||... .....+..- ...-..+.|+|+|++|+.++. +++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 789999999998886 367899999753 333333211 122357899999999998874 578
Q ss_pred EEEEECCCcceeEE-EeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEec-----CCCcc-eEEEEECCCCC
Q 008467 340 AIVWDVKTEEWKQQ-FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-----GHQGE-VNCVKWDPTGS 412 (564)
Q Consensus 340 v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-----~h~~~-i~~v~~~~~~~ 412 (564)
|.++| .+++.+.. +..... + .+.......|++.+.|+.+.+++. .++.+.... ....+ .....+.+++.
T Consensus 150 v~viD-~t~~~~~~~i~~~~~-~-~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 225 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSPTC-Y-HIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSG 225 (373)
T ss_pred EEEEE-CCCCEEeEEcCCCce-E-EEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCC
Confidence 99999 99988776 543221 2 222233446777778899989988 665542211 11111 22345666665
Q ss_pred EEEEEeCCCcEEEEeCCCCe--eeeecccccccEEEEEEccCCCC--CCCCCCcEEEEEEe---------CCCeEEEEeC
Q 008467 413 LLASCSDDVTAKIWNMKQDK--YVHDLREHSKEIYTIRWSPTGSG--TNNPNQQLILASAS---------FDSTVKLWDV 479 (564)
Q Consensus 413 ~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~i~~i~~~p~~~~--~~~~~~~~~l~s~s---------~dg~i~iwd~ 479 (564)
.++..+..+.+.+.|+.+.. .+..+...........|.|.+.. ..+++...+.++.. ..+.|.++|+
T Consensus 226 ~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~ 305 (373)
T 2mad_H 226 RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG 305 (373)
T ss_pred EEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEEC
Confidence 54444577899999986542 22222111111112233333210 11222223333332 2468999999
Q ss_pred CCCeEEEEEeCCCCCEEEEEEcCCCC-EEEEEe-CCCcEEEEeCCCCeEEEEE
Q 008467 480 ELGKLLYSLNGHREPVYSLAFSPTGE-YLASGS-LDKSMHIWSLKEGKIVKTY 530 (564)
Q Consensus 480 ~~~~~~~~~~~h~~~i~~~~~spdg~-~lasgs-~dg~i~iw~~~~~~~~~~~ 530 (564)
.+++.+.++.. ......++|+|||+ .++++. .++.|.+||+.+++.+++.
T Consensus 306 ~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 306 LVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 99999888863 33579999999999 777777 5899999999999998884
No 201
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.56 E-value=2.3e-11 Score=117.00 Aligned_cols=233 Identities=8% Similarity=0.048 Sum_probs=169.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEe-ecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467 276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 354 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 354 (564)
..+.+++++++|+++++...++.|.+|+..+..... ...+...+.+++++++|..+++...++.|..||.. +.. ..+
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~ 92 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEY 92 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEE
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEE
Confidence 568999999999988877778999999988544332 22345678999999999988887778889999865 221 111
Q ss_pred eecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee
Q 008467 355 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 434 (564)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~ 434 (564)
. +......+.++++++++.++++...++.|.+||. ++...
T Consensus 93 ~---------------------------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~ 132 (299)
T 2z2n_A 93 T---------------------------------------LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR 132 (299)
T ss_dssp E---------------------------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred e---------------------------------------CCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE
Confidence 0 0112335678999999998888878889999998 44332
Q ss_pred e-ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEE-EeCCCCCEEEEEEcCCCCEEEEEeC
Q 008467 435 H-DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTGEYLASGSL 512 (564)
Q Consensus 435 ~-~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~i~~~~~spdg~~lasgs~ 512 (564)
. .+..+...+..+++.+++. +.++...++.|..||. +++.... +......+..++++++|+++++...
T Consensus 133 ~~~~~~~~~~~~~i~~~~~g~---------l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 202 (299)
T 2z2n_A 133 EYELPNKGSYPSFITLGSDNA---------LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII 202 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSC---------EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred EecCCCCCCCCceEEEcCCCC---------EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC
Confidence 2 2223445678899988764 4555666789999999 6665432 3334456889999999998887777
Q ss_pred CCcEEEEeCCCCeEEEEEec---CCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 513 DKSMHIWSLKEGKIVKTYTG---NGGIFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 513 dg~i~iw~~~~~~~~~~~~~---~~~i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
++.|.+|+. +++... +.. ...+..++++++|+..++...++.|.+||.
T Consensus 203 ~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 203 GNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp TTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred CceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 889999999 776543 322 256899999999997777767788888874
No 202
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.56 E-value=4.4e-11 Score=115.09 Aligned_cols=275 Identities=11% Similarity=0.027 Sum_probs=187.0
Q ss_pred ccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 008467 216 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 295 (564)
Q Consensus 216 ~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~ 295 (564)
...+.++++.++|+++++...++.|.+|+.. +.. .. .. . ......+..+++.++|.+.++...
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~---------~~--~~-~----~~~~~~~~~i~~~~~g~l~v~~~~ 81 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI---------KE--FE-V----PTPDAKVMCLIVSSLGDIWFTENG 81 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE---------EE--EE-C----SSTTCCEEEEEECTTSCEEEEETT
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce---------EE--EE-C----CCCCCcceeEEECCCCCEEEEecC
Confidence 4567899999999988887788999999865 321 00 00 0 112356889999999998887777
Q ss_pred CCeEEEEECCCceeEe-ecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE-EeecccCeEEEEcCC-CceE
Q 008467 296 DGQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-FEFHSGPTLDVDWRN-NVSF 372 (564)
Q Consensus 296 dg~i~vw~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~ 372 (564)
++.|..|+..+..... +......+.++++.++|+.+++...++.|..||.. ++.... +......+..+.... ...+
T Consensus 82 ~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~ 160 (300)
T 2qc5_A 82 ANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALW 160 (300)
T ss_dssp TTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEE
T ss_pred CCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEE
Confidence 8899999988655322 22244678999999999988887778899999987 554422 111223455555543 3455
Q ss_pred EEEeCCCeEEEEEcCCCceee-EecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeee-ecccccccEEEEEEc
Q 008467 373 ATSSTDNMIYVCKIGENRPIK-TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH-DLREHSKEIYTIRWS 450 (564)
Q Consensus 373 ~~~~~d~~i~~~~~~~~~~~~-~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~-~~~~~~~~i~~i~~~ 450 (564)
++...++.|+.++. .+.... ....+...+.+++++++|.+.++....+.|.+|+. ++.... .+..+...+.++++.
T Consensus 161 v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d 238 (300)
T 2qc5_A 161 FTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAG 238 (300)
T ss_dssp EEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred EEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEEC
Confidence 66666788888887 333322 22234456889999999998887777888999998 443322 233345567889998
Q ss_pred cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE-EEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 008467 451 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL-YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 522 (564)
Q Consensus 451 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~ 522 (564)
+++. +.++...++.|..||.. ++.. ..+......+.+++++++|+++++.. . .|..++.+
T Consensus 239 ~~g~---------l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 239 KNSE---------IWFTEWGANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp STTC---------EEEEETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred CCCC---------EEEeccCCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 8764 45555567899999984 5443 22333345678999999999777655 4 67777653
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.56 E-value=5.5e-12 Score=122.53 Aligned_cols=244 Identities=9% Similarity=0.069 Sum_probs=160.0
Q ss_pred CCccceEEEEECCCCCEEEE-------EECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC
Q 008467 214 GHTSEVCACAWSPAGSLLAS-------GSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 286 (564)
Q Consensus 214 ~h~~~V~~~~~sp~~~~las-------gs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 286 (564)
..-....+++|++++.++++ +..++.|.+|+..++... . +.. .........+..++++++
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~---------~--~~~--~~~~~~~~~~~~i~~~~~ 81 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT---------V--ICK--PEVNGYGGIPAGCQCDRD 81 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE---------E--EEC--CEETTEECCEEEEEECSS
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE---------E--EEe--cccCCCCCCCceEEEecC
Confidence 33455689999999998888 678899999997665321 0 000 000012245889999999
Q ss_pred -CCEEEEEeCCCeEEEEECCCceeEe-ecC----CCCCEEEEEeCCCCCEEEEeeCC---------------CcEEEEEC
Q 008467 287 -GTLLATGSYDGQARIWSTNGDLKCT-LSK----HKGPIFSLKWNKKGDYLLTGSCD---------------KTAIVWDV 345 (564)
Q Consensus 287 -g~~l~sg~~dg~i~vw~~~~~~~~~-~~~----h~~~V~~l~~~~~~~~l~s~s~D---------------~~v~iwd~ 345 (564)
|+++++.. .+.|.+|+..+..... ... ....+.+++++++|+.+++...+ +.|..||.
T Consensus 82 ~g~l~v~~~-~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (314)
T 1pjx_A 82 ANQLFVADM-RLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT 160 (314)
T ss_dssp SSEEEEEET-TTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred CCcEEEEEC-CCCEEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECC
Confidence 77655544 4478889987554333 221 12347889999999877776554 33444443
Q ss_pred CCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEEC----CCCCEE-EEEeCC
Q 008467 346 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD----PTGSLL-ASCSDD 420 (564)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~----~~~~~l-as~s~d 420 (564)
. ++.. .+..+......++|+ |+++.| ++.+.+
T Consensus 161 ~-g~~~------------------------------------------~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~ 197 (314)
T 1pjx_A 161 D-GQMI------------------------------------------QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPT 197 (314)
T ss_dssp T-SCEE------------------------------------------EEEEEESSEEEEEEEECTTSCEEEEEEEETTT
T ss_pred C-CCEE------------------------------------------EeccCCCCcceEEEecccCCCCCEEEEEECCC
Confidence 2 2111 111122345678899 999654 555668
Q ss_pred CcEEEEeCC-CCe-----eeeeccccc-ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCC
Q 008467 421 VTAKIWNMK-QDK-----YVHDLREHS-KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE 493 (564)
Q Consensus 421 g~i~iwd~~-~~~-----~~~~~~~~~-~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~ 493 (564)
+.|.+|+.. ++. ....+..+. .....+++.++|. ++++...++.|.+||..+++.+..+..+..
T Consensus 198 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~---------l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~ 268 (314)
T 1pjx_A 198 KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN---------LLVANWGSSHIEVFGPDGGQPKMRIRCPFE 268 (314)
T ss_dssp TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC---------EEEEEETTTEEEEECTTCBSCSEEEECSSS
T ss_pred CeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC---------EEEEEcCCCEEEEEcCCCCcEeEEEeCCCC
Confidence 899999976 333 222333333 4567889988774 566666788999999987776666666667
Q ss_pred CEEEEEEcCCCCEEE-EEeCCCcEEEEeCCC
Q 008467 494 PVYSLAFSPTGEYLA-SGSLDKSMHIWSLKE 523 (564)
Q Consensus 494 ~i~~~~~spdg~~la-sgs~dg~i~iw~~~~ 523 (564)
.+.+++|+|+|++|. +...++.|..|++..
T Consensus 269 ~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 269 KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 899999999999554 455668899999864
No 204
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.55 E-value=2.7e-12 Score=126.21 Aligned_cols=291 Identities=12% Similarity=0.078 Sum_probs=187.8
Q ss_pred ECCCCCEEEEEEC-----CCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe----
Q 008467 224 WSPAGSLLASGSG-----DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS---- 294 (564)
Q Consensus 224 ~sp~~~~lasgs~-----D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~---- 294 (564)
..|+++.++.... ++.+.+.|..+.+.. ..... ...+ . ++++|||++++++.
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~-------------~~I~v----G~~P-~-va~spDG~~lyVan~~~~ 100 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI-------------GMIDG----GFLP-N-PVVADDGSFIAHASTVFS 100 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE-------------EEEEE----CSSC-E-EEECTTSSCEEEEEEEEE
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEE-------------EEEEC----CCCC-c-EEECCCCCEEEEEccccc
Confidence 3577776666554 678999998765421 11111 1122 3 89999999887765
Q ss_pred ------CCCeEEEEECCC-ceeEeecCC-------CCCEEEEEeCCCCCEEEEeeC--CCcEEEEECCCcceeEEEeecc
Q 008467 295 ------YDGQARIWSTNG-DLKCTLSKH-------KGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHS 358 (564)
Q Consensus 295 ------~dg~i~vw~~~~-~~~~~~~~h-------~~~V~~l~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~ 358 (564)
.++.|.+||... .....+.-. ...-..+.|+|+|++++.+.. +++|.++|+.+++.+..+....
T Consensus 101 r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g 180 (386)
T 3sjl_D 101 RIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD 180 (386)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred ccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC
Confidence 367899999764 334443211 112356899999999988764 6899999999999888775432
Q ss_pred cCeEEEEcCCCceEEEEeCCCeEEEEEcCC-CceeeEecCC----Ccce-EEEEE-CCCCCEEEEEeCCCcEEEEeCCCC
Q 008467 359 GPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NRPIKTFAGH----QGEV-NCVKW-DPTGSLLASCSDDVTAKIWNMKQD 431 (564)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~h----~~~i-~~v~~-~~~~~~las~s~dg~i~iwd~~~~ 431 (564)
. ..+.......|++.+.||.+.+.++.. ++.+.....+ ...+ ....| .++|++++ .+.+|++.+.|+.+.
T Consensus 181 ~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~ 257 (386)
T 3sjl_D 181 C--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSG 257 (386)
T ss_dssp E--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTS
T ss_pred c--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCC
Confidence 1 222233455677778899988888876 4443221111 1122 22455 36776554 566899999998765
Q ss_pred ee--eeecc--c--------ccccEEEEEEccCCCCCCCCCCcEEEEEEe--------CCCeEEEEeCCCCeEEEEEeCC
Q 008467 432 KY--VHDLR--E--------HSKEIYTIRWSPTGSGTNNPNQQLILASAS--------FDSTVKLWDVELGKLLYSLNGH 491 (564)
Q Consensus 432 ~~--~~~~~--~--------~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s--------~dg~i~iwd~~~~~~~~~~~~h 491 (564)
.. +..+. . .......++++|++. .++++... -.+.|.+.|+.+++.+.++.-
T Consensus 258 ~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~-------~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v- 329 (386)
T 3sjl_D 258 DAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD-------RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM- 329 (386)
T ss_dssp SCEECCCEESSCHHHHHTTEEECSSSCEEEETTTT-------EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-
T ss_pred cceeecceeccccccccccccCCCcceeeECCCCC-------eEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-
Confidence 42 22111 0 011112234444432 23333321 125799999999999888753
Q ss_pred CCCEEEEEEcCCCC-EEEEE-eCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccC
Q 008467 492 REPVYSLAFSPTGE-YLASG-SLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE 544 (564)
Q Consensus 492 ~~~i~~~~~spdg~-~lasg-s~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~ 544 (564)
..++++|+|+||++ +|+++ ..++.|.++|..++++++++...+....|.+++|
T Consensus 330 g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 330 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 23678999999996 66654 4589999999999999999988777778888876
No 205
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.52 E-value=1.9e-11 Score=118.04 Aligned_cols=228 Identities=14% Similarity=0.202 Sum_probs=156.7
Q ss_pred eEEEEECCC-CCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee
Q 008467 278 VTTLDWNGE-GTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 356 (564)
Q Consensus 278 V~~l~~s~~-g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 356 (564)
--+..|+++ +.++++...++.|..|+..+.....+ .....+.+++++++|+++++ . ++.|.+||..++++......
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~ 91 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATV 91 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEEC
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEec
Confidence 457789985 55677777789999999876544333 34577999999999995554 3 56899999887653321110
Q ss_pred cccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCC---------CcEEEEe
Q 008467 357 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD---------VTAKIWN 427 (564)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~d---------g~i~iwd 427 (564)
.... ....++.++++|+|+++++...+ ....||.
T Consensus 92 ------------------------------~~~~-------~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~ 134 (297)
T 3g4e_A 92 ------------------------------DNDK-------KNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYS 134 (297)
T ss_dssp ------------------------------CTTC-------SSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEE
T ss_pred ------------------------------CCCC-------CCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEE
Confidence 0000 12346789999999977755322 2345555
Q ss_pred CCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC--CCCeE-----EEEEeCCCCCEEEEEE
Q 008467 428 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV--ELGKL-----LYSLNGHREPVYSLAF 500 (564)
Q Consensus 428 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~--~~~~~-----~~~~~~h~~~i~~~~~ 500 (564)
+.....+..+..+......++|+|++. .++++.+.++.|.+|++ .++.. ...+..+...+..+++
T Consensus 135 ~d~~g~~~~~~~~~~~pngi~~spdg~--------~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~ 206 (297)
T 3g4e_A 135 LFPDHHVKKYFDQVDISNGLDWSLDHK--------IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCI 206 (297)
T ss_dssp ECTTSCEEEEEEEESBEEEEEECTTSC--------EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEE
T ss_pred EECCCCEEEEeeccccccceEEcCCCC--------EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEE
Confidence 543322222333334457899999875 35566677899999987 45543 2233333456789999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEEc-cCCCEEEEEEc
Q 008467 501 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWN-KEGDKIAACFA 553 (564)
Q Consensus 501 spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~-~~g~~la~~~~ 553 (564)
+++|++.++....+.|.+|+..+|+++..+... ..+++++|. |+++.|.++..
T Consensus 207 d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 207 DAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp BTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 999998888888889999999999998888765 568999998 89998877655
No 206
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.51 E-value=1.4e-10 Score=115.40 Aligned_cols=263 Identities=8% Similarity=-0.014 Sum_probs=170.6
Q ss_pred CCCCCEEEEEeC--CC---eEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEee----------CCCcEEEEECCC
Q 008467 284 NGEGTLLATGSY--DG---QARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVWDVKT 347 (564)
Q Consensus 284 s~~g~~l~sg~~--dg---~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D~~v~iwd~~~ 347 (564)
.|++.++.+... .. .|.++|.. ++....+..-..+ .+.++|+|++++.+. .+++|.+||+.+
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 356666666543 22 78999975 4555555544445 899999999998876 367899999998
Q ss_pred cceeEEEeec-------ccCeEEEEcCCCc--eEEEEeC-CCeEEEEEcCCCceeeE-ecCCCcceEEEEECCCC-CEEE
Q 008467 348 EEWKQQFEFH-------SGPTLDVDWRNNV--SFATSST-DNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTG-SLLA 415 (564)
Q Consensus 348 ~~~~~~~~~~-------~~~~~~~~~~~~~--~~~~~~~-d~~i~~~~~~~~~~~~~-~~~h~~~i~~v~~~~~~-~~la 415 (564)
.+.+..+... ......+.+.++. .+++... ++.|.++| .+.+.+.. +... .|+.+.|++ ..++
T Consensus 107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~----~~~~~~~~~~~~~~ 181 (373)
T 2mad_H 107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP----TCYHIHPGAPSTFY 181 (373)
T ss_pred CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC----ceEEEEeCCCceEE
Confidence 8877766543 1122345555443 3333333 57899999 88887766 4321 124455555 4566
Q ss_pred EEeCCCcEEEEeCCCCeeeeecc-----cccccE-EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEE
Q 008467 416 SCSDDVTAKIWNMKQDKYVHDLR-----EHSKEI-YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYS 487 (564)
Q Consensus 416 s~s~dg~i~iwd~~~~~~~~~~~-----~~~~~i-~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~ 487 (564)
+.+.||.+.+||. +++.+.... ....++ ....+.+++. . +++. +..+.|.+.|+..+. .+..
T Consensus 182 ~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-------~-~~~~-~~~~~v~vid~~~~~~~v~~~ 251 (373)
T 2mad_H 182 LLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSG-------R-IVWP-VYSGKILQADISAAGATNKAP 251 (373)
T ss_pred EEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCC-------E-EEEE-cCCceEEEEeccCCcceEeee
Confidence 7778999999999 776553221 111111 1123333321 1 2333 367899999987543 2222
Q ss_pred EeCC----------CCCEEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCC-
Q 008467 488 LNGH----------REPVYSLAFSPTGEYLASGSL----------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD- 546 (564)
Q Consensus 488 ~~~h----------~~~i~~~~~spdg~~lasgs~----------dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~- 546 (564)
+.-. ......++++||++.|..+.. .+.|.++|+.++++++++........++|+|||+
T Consensus 252 ~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~ 331 (373)
T 2mad_H 252 IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGP 331 (373)
T ss_pred eeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCe
Confidence 2110 122445889999988776543 3579999999999999998777789999999999
Q ss_pred EEEEEE-cCCcEEEEEee
Q 008467 547 KIAACF-ANHTVCVLDFR 563 (564)
Q Consensus 547 ~la~~~-~~~~v~v~~~~ 563 (564)
++.++. .++.|.|||.+
T Consensus 332 ~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 332 DLYALSAGTEVLHIYDAG 349 (373)
T ss_pred EEEEEcCCCCeEEEEECC
Confidence 677765 58899999975
No 207
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.51 E-value=1.9e-11 Score=123.31 Aligned_cols=237 Identities=14% Similarity=0.085 Sum_probs=163.3
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCC--cEEEEECCCcceeEE
Q 008467 276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK--TAIVWDVKTEEWKQQ 353 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~--~v~iwd~~~~~~~~~ 353 (564)
.....|+|+++|+++++...++.|++|+..+.....+........ ++|+++++.|+++..++ .|.+|+..++.....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~ 209 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR 209 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence 457899999999988888888999999988654443322222233 89999999999888766 688887654432111
Q ss_pred EeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecC-CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467 354 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 432 (564)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~ 432 (564)
+ ..+.. ....+.+++++|++..|+.+..++.|+.||..++.
T Consensus 210 ~--------------------------------------g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~ 251 (409)
T 3hrp_A 210 I--------------------------------------GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE 251 (409)
T ss_dssp E--------------------------------------EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC
T ss_pred e--------------------------------------eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC
Confidence 1 00011 23456778999954444457778899999988765
Q ss_pred eeee----cccccccE-E-EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC--------------
Q 008467 433 YVHD----LREHSKEI-Y-TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-------------- 492 (564)
Q Consensus 433 ~~~~----~~~~~~~i-~-~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-------------- 492 (564)
.... ..++.... . .++|+|.+. .++++-..++.|+.|+... . +..+.++.
T Consensus 252 ~~~~~~~~~~g~~~~~P~~~ia~~p~~g--------~lyv~d~~~~~I~~~~~~g-~-~~~~~g~~~~~g~~dg~~~~~~ 321 (409)
T 3hrp_A 252 VTLIKQLELSGSLGTNPGPYLIYYFVDS--------NFYMSDQNLSSVYKITPDG-E-CEWFCGSATQKTVQDGLREEAL 321 (409)
T ss_dssp EEEEEECCCCSCCCCSSCCEEEEETTTT--------EEEEEETTTTEEEEECTTC-C-EEEEEECTTCCSCBCEEGGGCB
T ss_pred EEEEecccccCCCCCCccccEEEeCCCC--------EEEEEeCCCCEEEEEecCC-C-EEEEEeCCCCCCcCCCcccccE
Confidence 3221 11222222 2 888888532 3566677789999999764 3 23333322
Q ss_pred -CCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEecC----------------CCEEEEEEccCCCEEEEEEcC
Q 008467 493 -EPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGKIVKTYTGN----------------GGIFEVCWNKEGDKIAACFAN 554 (564)
Q Consensus 493 -~~i~~~~~spdg~~lasgs-~dg~i~iw~~~~~~~~~~~~~~----------------~~i~~~~w~~~g~~la~~~~~ 554 (564)
.....++|+|+|+++++-+ .+++|+.|++.+|.+. ++.+. .....++++++|+.+++-..+
T Consensus 322 ~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n 400 (409)
T 3hrp_A 322 FAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWG 400 (409)
T ss_dssp CSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTT
T ss_pred eCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCC
Confidence 3478999999999888887 8899999998888754 33332 247899999999888888889
Q ss_pred CcEEEEEe
Q 008467 555 HTVCVLDF 562 (564)
Q Consensus 555 ~~v~v~~~ 562 (564)
++|+.+++
T Consensus 401 ~~Ir~i~~ 408 (409)
T 3hrp_A 401 KAIRKYAV 408 (409)
T ss_dssp CEEEEEEE
T ss_pred CeEEEEEe
Confidence 99988875
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.50 E-value=3.1e-12 Score=139.95 Aligned_cols=238 Identities=13% Similarity=0.079 Sum_probs=157.6
Q ss_pred CeEEEEECCCCCEEEEEeCC-----CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCc------------
Q 008467 277 DVTTLDWNGEGTLLATGSYD-----GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKT------------ 339 (564)
Q Consensus 277 ~V~~l~~s~~g~~l~sg~~d-----g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~------------ 339 (564)
.+..++|||||++|+.++.+ ..|++|+..+........+...+.+++|+|+ +.|+.++.|+.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~ 242 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYN 242 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCC
Confidence 57889999999999987654 3699999876543322222222357899999 99988887654
Q ss_pred --EEEEECCCccee--EEEeecc--cCeEEEEcCCCce-EEEEeC-----CCeEEEEEcCCC--ceeeEecCCCcceEEE
Q 008467 340 --AIVWDVKTEEWK--QQFEFHS--GPTLDVDWRNNVS-FATSST-----DNMIYVCKIGEN--RPIKTFAGHQGEVNCV 405 (564)
Q Consensus 340 --v~iwd~~~~~~~--~~~~~~~--~~~~~~~~~~~~~-~~~~~~-----d~~i~~~~~~~~--~~~~~~~~h~~~i~~v 405 (564)
|++|++.++... ..+.... ..+..+.|.++.. ++..+. ...|+++++..+ .+...+..+...+...
T Consensus 243 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~ 322 (741)
T 1yr2_A 243 QTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF 322 (741)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE
T ss_pred CEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE
Confidence 889998776532 2232222 2366778876653 333332 348999998765 3145555555555444
Q ss_pred EECCCCCEEEEEeCC----CcEEEEeCCCC--eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 008467 406 KWDPTGSLLASCSDD----VTAKIWNMKQD--KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 479 (564)
Q Consensus 406 ~~~~~~~~las~s~d----g~i~iwd~~~~--~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 479 (564)
. +|+|+.|+..+++ +.|.+||+.+. .....+..+...+..+.|.. + .++++...|+..+||.+
T Consensus 323 ~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~-~---------~lv~~~~~dg~~~l~~~ 391 (741)
T 1yr2_A 323 V-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAG-N---------RLFASYIHDAKSQVLAF 391 (741)
T ss_dssp E-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEB-T---------EEEEEEEETTEEEEEEE
T ss_pred E-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEEC-C---------EEEEEEEECCEEEEEEE
Confidence 3 4899988887764 45999998874 33333334444566677752 2 37788888998888755
Q ss_pred C-CCeEEEEEeC-CCCCEEEEEEcCCCCEEEEE----eCCCcEEEEeCCCCeE
Q 008467 480 E-LGKLLYSLNG-HREPVYSLAFSPTGEYLASG----SLDKSMHIWSLKEGKI 526 (564)
Q Consensus 480 ~-~~~~~~~~~~-h~~~i~~~~~spdg~~lasg----s~dg~i~iw~~~~~~~ 526 (564)
. .++.+..+.. +...|..++++|+++.|+.. ...++|++||+.+++.
T Consensus 392 ~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 392 DLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp ETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred eCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 4 4666666654 35668899999999866532 2347899999988773
No 209
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.46 E-value=1e-10 Score=114.34 Aligned_cols=226 Identities=11% Similarity=0.044 Sum_probs=151.5
Q ss_pred eEEEEECCC-CCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee
Q 008467 278 VTTLDWNGE-GTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 356 (564)
Q Consensus 278 V~~l~~s~~-g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 356 (564)
.....|+|+ +.++++...++.|..|+..+.....+. ....+.++.|+++|+++++. . ..|.+||+.++++......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~ 127 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAEL 127 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECS
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeC
Confidence 456789997 456667777899999998765444333 35679999999999877654 3 4588999877653221100
Q ss_pred cccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC------CCcEEEEeCCC
Q 008467 357 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD------DVTAKIWNMKQ 430 (564)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~------dg~i~iwd~~~ 430 (564)
... .....++.++++|+|+++++... .+.|..++ +
T Consensus 128 ------------------------------~~~-------~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~ 168 (326)
T 2ghs_A 128 ------------------------------ESD-------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--K 168 (326)
T ss_dssp ------------------------------STT-------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--T
T ss_pred ------------------------------CCC-------CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--C
Confidence 000 01235778999999998776542 23455555 3
Q ss_pred CeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC--CC-e-----EEEEEeCCCCCEEEEEEcC
Q 008467 431 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE--LG-K-----LLYSLNGHREPVYSLAFSP 502 (564)
Q Consensus 431 ~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~--~~-~-----~~~~~~~h~~~i~~~~~sp 502 (564)
++. ..+..+......++|+|++. .+.++.+.++.|.+||+. ++ . ....+......+..+++++
T Consensus 169 g~~-~~~~~~~~~~~~i~~s~dg~--------~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~ 239 (326)
T 2ghs_A 169 GKV-TKLFADISIPNSICFSPDGT--------TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA 239 (326)
T ss_dssp TEE-EEEEEEESSEEEEEECTTSC--------EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT
T ss_pred CcE-EEeeCCCcccCCeEEcCCCC--------EEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC
Confidence 433 22323334567899999874 244555667899999985 55 3 2333333345578899999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC-CEEEEEEc-cCCCEEEEEEcCC
Q 008467 503 TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN-KEGDKIAACFANH 555 (564)
Q Consensus 503 dg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~-~i~~~~w~-~~g~~la~~~~~~ 555 (564)
+|.+.++...++.|.+|+. +++.+..+.... .+.+++|+ ++++.|.++...+
T Consensus 240 ~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 240 EGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp TSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred CCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 9998887777788999998 677777776544 58999998 8998887665543
No 210
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.42 E-value=8.2e-11 Score=117.78 Aligned_cols=264 Identities=10% Similarity=0.056 Sum_probs=173.4
Q ss_pred CcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe----------CCCeEEEEECCC-
Q 008467 238 STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS----------YDGQARIWSTNG- 306 (564)
Q Consensus 238 ~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~----------~dg~i~vw~~~~- 306 (564)
+.|.+.|..+.+.. ..... ...+ .++++|||++++++. .++.|.++|...
T Consensus 99 ~~VsVID~~t~~vv-------------~~I~v----G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 99 TQQFVIDGSTGRIL-------------GMTDG----GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp EEEEEEETTTTEEE-------------EEEEE----CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CeEEEEECCCCEEE-------------EEEEC----CCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 68999998765421 11111 1123 789999999888876 367899999754
Q ss_pred ceeEeecCC-------CCCEEEEEeCCCCCEEEEeeC--CCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeC
Q 008467 307 DLKCTLSKH-------KGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSST 377 (564)
Q Consensus 307 ~~~~~~~~h-------~~~V~~l~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (564)
+....+.-- ......+.|+|+|++++.+.. +++|.+.|+.+++.+..+..... ..+.......|++.+.
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~v~~~~ 237 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--YHIFPASPTVFYMNCR 237 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEET
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--eeeccCCCcEEEEEcC
Confidence 444443211 122356889999999998874 57899999999998887764321 2222223456777778
Q ss_pred CCeEEEEEcCCCceeeE----ecCCCcc-eEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee--eecc-------c---c
Q 008467 378 DNMIYVCKIGENRPIKT----FAGHQGE-VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV--HDLR-------E---H 440 (564)
Q Consensus 378 d~~i~~~~~~~~~~~~~----~~~h~~~-i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~--~~~~-------~---~ 440 (564)
|+.+.+.+...++.... +.-...+ ...+.+.+++..++..+..+.+.+.|....... ..+. . .
T Consensus 238 dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~ 317 (426)
T 3c75_H 238 DGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWR 317 (426)
T ss_dssp TSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEE
T ss_pred CCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccc
Confidence 88887777754443321 1111111 124568999888777788899999998654321 1110 0 0
Q ss_pred cccEEEEEEccCCCCCCCCCCcEEEEEEe---------CCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCC-EEEEE
Q 008467 441 SKEIYTIRWSPTGSGTNNPNQQLILASAS---------FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE-YLASG 510 (564)
Q Consensus 441 ~~~i~~i~~~p~~~~~~~~~~~~~l~s~s---------~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~-~lasg 510 (564)
......++++|++. .++++.. ..+.|.++|..+.+.+.++... .....++|+|||+ +++++
T Consensus 318 p~g~~~va~s~dg~--------rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~ 388 (426)
T 3c75_H 318 PGGWQQTAYHRQSD--------RIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYAL 388 (426)
T ss_dssp ECSSSCEEEEGGGT--------EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEE
T ss_pred cCCceeeEEcCCCC--------EEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEE
Confidence 01111256677653 2333322 1357999999999999888532 2478999999999 88888
Q ss_pred e-CCCcEEEEeCCCCeEEEEEe
Q 008467 511 S-LDKSMHIWSLKEGKIVKTYT 531 (564)
Q Consensus 511 s-~dg~i~iw~~~~~~~~~~~~ 531 (564)
. .++.|.++|+.+++.++++.
T Consensus 389 n~~s~~VsVID~~t~kvv~tI~ 410 (426)
T 3c75_H 389 SAGTQTLHIYDAATGEELRSVD 410 (426)
T ss_dssp ETTTTEEEEEETTTCCEEEEEC
T ss_pred cCCCCeEEEEECCCCCEEEEec
Confidence 7 58999999999999999873
No 211
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.42 E-value=5.4e-12 Score=124.58 Aligned_cols=181 Identities=12% Similarity=0.072 Sum_probs=133.4
Q ss_pred CEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecC
Q 008467 318 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG 397 (564)
Q Consensus 318 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~ 397 (564)
++..|++++....+++|+.+ .+++|++....-. +. .. .+. ..+.... .
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~--~~--~~------------------~~~--------~~~~~~~-~ 86 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDH--IT--SD------------------STP--------LTFKWEK-E 86 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHH--HH--SS------------------SCC--------CCCSEEE-E
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhh--hc--cc------------------ccc--------ccceEEe-e
Confidence 67889999999999999987 4556986543200 00 00 000 0111111 2
Q ss_pred CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEE
Q 008467 398 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 477 (564)
Q Consensus 398 h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iw 477 (564)
+.+ |..++| ++++|+++ .++.|++||+.+.........|...+.++.+.+. -+++++.||.|.+|
T Consensus 87 lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p-----------~~av~~~dG~L~v~ 151 (388)
T 1xip_A 87 IPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN-----------TLVILNSVNDLSAL 151 (388)
T ss_dssp CTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS-----------EEEEEETTSEEEEE
T ss_pred CCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC-----------CEEEEECCCCEEEE
Confidence 455 899999 99999999 8899999999876665566677778888776542 17788999999999
Q ss_pred eCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--EEEE------e----cCCCEEEEEEccCC
Q 008467 478 DVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI--VKTY------T----GNGGIFEVCWNKEG 545 (564)
Q Consensus 478 d~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~--~~~~------~----~~~~i~~~~w~~~g 545 (564)
|+..+.... +...|.+++|||+| ++.|..||.|++|+...+.+ .+++ . +...|.+++|.+++
T Consensus 152 dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~ 225 (388)
T 1xip_A 152 DLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ 225 (388)
T ss_dssp ETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred EccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC
Confidence 999877653 34589999999999 78899999999999888776 5566 2 24558999999999
Q ss_pred CEEEEE
Q 008467 546 DKIAAC 551 (564)
Q Consensus 546 ~~la~~ 551 (564)
.+|++=
T Consensus 226 ~flv~y 231 (388)
T 1xip_A 226 DFLAVF 231 (388)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 988753
No 212
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.41 E-value=8.6e-11 Score=113.80 Aligned_cols=230 Identities=9% Similarity=0.037 Sum_probs=153.8
Q ss_pred CeEEEEECCCCC-EEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEe
Q 008467 277 DVTTLDWNGEGT-LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE 355 (564)
Q Consensus 277 ~V~~l~~s~~g~-~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 355 (564)
......|+++|+ +++++..++.|..|+..+.. ..+..+...+.++.++++|+.+++...++.|.+|+.. +.......
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~ 123 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVG 123 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEETTSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEC
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeCCCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEe
Confidence 356788999998 67777788999999987653 4455566778999999999976666666889999875 43221100
Q ss_pred ecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecC-CCcceEEEEECCCCCEEEE----EeC-----------
Q 008467 356 FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLAS----CSD----------- 419 (564)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~i~~v~~~~~~~~las----~s~----------- 419 (564)
. ..+ ....++.++++|+|++++| |..
T Consensus 124 ~--------------------------------------~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~ 165 (305)
T 3dr2_A 124 R--------------------------------------YAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPE 165 (305)
T ss_dssp E--------------------------------------ETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCS
T ss_pred c--------------------------------------cCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccc
Confidence 0 000 0124567889999998886 332
Q ss_pred --CCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC------CeEEEEeCCCCeEE--EEE-
Q 008467 420 --DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD------STVKLWDVELGKLL--YSL- 488 (564)
Q Consensus 420 --dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~--~~~- 488 (564)
.+.|..||..+++..... .......++|+|++. .|..+... +.|.+|++..+... ..+
T Consensus 166 ~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~---------~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~ 234 (305)
T 3dr2_A 166 LAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQ---------TLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFA 234 (305)
T ss_dssp SSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSS---------EEEEEECCC---CCCEEEEEEEETTEEEEEEEEE
T ss_pred cCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCC---------EEEEEecCCcCCCCCEEEEEEecCCCccCCeEEE
Confidence 245777776555543322 334557899999875 34444443 78999998755411 111
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 489 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 489 ~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
.........++++++|++.++. .+| |.+|+. +|+.+..+.....+..++|+++++.|.++..++ +..++
T Consensus 235 ~~~~~~pdgi~~d~~G~lwv~~-~~g-v~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 235 SVPDGLPDGFCVDRGGWLWSSS-GTG-VCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp CCSSSCCCSEEECTTSCEEECC-SSE-EEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred ECCCCCCCeEEECCCCCEEEec-CCc-EEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 1122334678999999965544 444 999998 577777777666788999999999999887764 44443
No 213
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.39 E-value=1.8e-11 Score=120.68 Aligned_cols=257 Identities=9% Similarity=0.042 Sum_probs=167.0
Q ss_pred CCeEEEEECCCCCEEEEEeC--CCeEEEEEC-CCceeE------eecCCCCCEEEEEeCCCCCEEEEeeC-----CCcEE
Q 008467 276 KDVTTLDWNGEGTLLATGSY--DGQARIWST-NGDLKC------TLSKHKGPIFSLKWNKKGDYLLTGSC-----DKTAI 341 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~--dg~i~vw~~-~~~~~~------~~~~h~~~V~~l~~~~~~~~l~s~s~-----D~~v~ 341 (564)
..+..++++++|+++++... ++.++||.. ++.+.. ....|-..+.+++++++++.+++-.. +..|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 35789999999999988642 343555544 444321 11234568999999999876555433 57899
Q ss_pred EEECCCcceeEEEeeccc------CeEEEEcC--CCceEEEEe---CCCeEEEEEcCCCceeeEecCCCcceE-EEEECC
Q 008467 342 VWDVKTEEWKQQFEFHSG------PTLDVDWR--NNVSFATSS---TDNMIYVCKIGENRPIKTFAGHQGEVN-CVKWDP 409 (564)
Q Consensus 342 iwd~~~~~~~~~~~~~~~------~~~~~~~~--~~~~~~~~~---~d~~i~~~~~~~~~~~~~~~~h~~~i~-~v~~~~ 409 (564)
+||+.++++...+..... ...++... ....+++.. .++.|++|+..+++..+.+.+|..... ...+.+
T Consensus 97 ~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~ 176 (343)
T 2qe8_A 97 AWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVI 176 (343)
T ss_dssp EEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEE
T ss_pred EEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeE
Confidence 999999987777664321 12344443 345566665 678999999988777666665532211 133445
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC-eEEEEeCC---CCe--
Q 008467 410 TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS-TVKLWDVE---LGK-- 483 (564)
Q Consensus 410 ~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg-~i~iwd~~---~~~-- 483 (564)
+|..+.+.+.+++++.|.. .+..++|+|++. .|..+..++ .|..++.. .+.
T Consensus 177 ~g~~~~~~~~~g~~~~~~~--------------~~~gia~s~dg~---------~ly~~~~~~~~l~~~~~~~~~~~~~~ 233 (343)
T 2qe8_A 177 DGVPVQIGQPDGTVIRPHL--------------GVNGIVLDAENE---------WLYLSPMHSTSMYRIKSADLSNLQLT 233 (343)
T ss_dssp TTEECBEECTTSCEECCCC--------------CEEEEEECTTSC---------EEEEEESSCSEEEEEEHHHHTCTTCC
T ss_pred CCEEEEeccCCCceeceec--------------ccceeEeccCCC---------EEEEEeCCCCeEEEEEHHHhcCCCCC
Confidence 6777777888888876641 246799999875 455555555 44444421 110
Q ss_pred ---EE--EEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec--CCCEEEEEEccCCCEEEEEEcCC
Q 008467 484 ---LL--YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAACFANH 555 (564)
Q Consensus 484 ---~~--~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~--~~~i~~~~w~~~g~~la~~~~~~ 555 (564)
.. ....++......++++++|.++++...++.|.+|+..+|++...... -..+.+++++++|+.++++...+
T Consensus 234 ~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 234 DAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLH 312 (343)
T ss_dssp HHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred hhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccc
Confidence 00 01112333456799999999999999999999999866775443332 23478999999999887776443
No 214
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.39 E-value=1.4e-10 Score=114.04 Aligned_cols=267 Identities=9% Similarity=0.026 Sum_probs=172.9
Q ss_pred ECCCCCEEEEEeC-----CCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEee----------CCCcEEEEECC
Q 008467 283 WNGEGTLLATGSY-----DGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVWDVK 346 (564)
Q Consensus 283 ~s~~g~~l~sg~~-----dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D~~v~iwd~~ 346 (564)
..|++..+.+... ++.|.+.|.. ++....+..-..| .+.++|+|++++.++ .++.|.+||..
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 4678888777765 6799999975 4555566554556 399999999988775 36789999999
Q ss_pred CcceeEEEeecc-------cCeEEEEcC--CCceEEEEe-CCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEE
Q 008467 347 TEEWKQQFEFHS-------GPTLDVDWR--NNVSFATSS-TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS 416 (564)
Q Consensus 347 ~~~~~~~~~~~~-------~~~~~~~~~--~~~~~~~~~-~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las 416 (564)
+.+.+..+.... .....+.+. ....+++.. .++.|.++|..+.+.+.++.-.. . ...+....+.+++
T Consensus 118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~ 194 (386)
T 3sjl_D 118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFM 194 (386)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEE
T ss_pred CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEE
Confidence 999888776532 112233343 333445543 37899999999998887774321 1 1223223456677
Q ss_pred EeCCCcEEEEeCCC-Ceeeeecccc----cccEE-EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEEE
Q 008467 417 CSDDVTAKIWNMKQ-DKYVHDLREH----SKEIY-TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYSL 488 (564)
Q Consensus 417 ~s~dg~i~iwd~~~-~~~~~~~~~~----~~~i~-~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~ 488 (564)
.+.||++-+.++.+ ++.......+ ..++. ...|.+ +++..+ -.+.+|+|.+.|+..+. .+..+
T Consensus 195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~-------~dG~~~--~vs~~g~V~v~d~~~~~~~v~~~~ 265 (386)
T 3sjl_D 195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ-------KAGRLV--WPTYTGKIHQIDLSSGDAKFLPAV 265 (386)
T ss_dssp EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET-------TTTEEE--EEBTTSEEEEEECTTSSCEECCCE
T ss_pred ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEc-------CCCcEE--EEeCCCEEEEEECCCCcceeecce
Confidence 78888888888875 4432211100 01111 012211 122222 35568999999997553 22222
Q ss_pred e---------C-CCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCC-E
Q 008467 489 N---------G-HREPVYSLAFSPTGEYLASGSL----------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD-K 547 (564)
Q Consensus 489 ~---------~-h~~~i~~~~~spdg~~lasgs~----------dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~-~ 547 (564)
. + ....+..++++|+++.|..... .+.|.++|++++++++.+.....++.+++++||+ +
T Consensus 266 ~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ 345 (386)
T 3sjl_D 266 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPL 345 (386)
T ss_dssp ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCE
T ss_pred eccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeE
Confidence 1 0 0112335788999988876542 2579999999999999988777788999999997 6
Q ss_pred EEEE-EcCCcEEEEEee
Q 008467 548 IAAC-FANHTVCVLDFR 563 (564)
Q Consensus 548 la~~-~~~~~v~v~~~~ 563 (564)
|.++ ..++.|.|||..
T Consensus 346 ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 346 LYALSTGDKTLYIHDAE 362 (386)
T ss_dssp EEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECC
Confidence 6654 448899999964
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.38 E-value=1.3e-11 Score=121.85 Aligned_cols=165 Identities=11% Similarity=0.071 Sum_probs=128.6
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEECCCc----------e-eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC
Q 008467 277 DVTTLDWNGEGTLLATGSYDGQARIWSTNGD----------L-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 345 (564)
Q Consensus 277 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~----------~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~ 345 (564)
.+..+++++...++++|+.++ +++|+...- . ......+.+ |+.|+| ++++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 588899999999999999985 455974311 1 112234666 999999 88999998 8899999999
Q ss_pred CCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEE
Q 008467 346 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 425 (564)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~i 425 (564)
.+.........+..++.++.+.... ++++..||.+++|++....... +...|+|++|||+| ++.|..||++++
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~ 186 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQS 186 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEE
T ss_pred hhhhccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEE
Confidence 8776555566666777787776554 8889999999999998776543 45689999999999 678999999999
Q ss_pred EeCCCCee--eeec------c---cccccEEEEEEccCC
Q 008467 426 WNMKQDKY--VHDL------R---EHSKEIYTIRWSPTG 453 (564)
Q Consensus 426 wd~~~~~~--~~~~------~---~~~~~i~~i~~~p~~ 453 (564)
|+...... ..++ . +|...|.+|.|.+++
T Consensus 187 ~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~ 225 (388)
T 1xip_A 187 FAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ 225 (388)
T ss_dssp EEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred EcCCCccccccceecCCcccccccCCCeeEEEEEEecCC
Confidence 98877664 4444 2 367889999999865
No 216
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.38 E-value=2.2e-11 Score=131.90 Aligned_cols=235 Identities=14% Similarity=0.157 Sum_probs=154.7
Q ss_pred CCCCEEEEEeCCCCCEEEE-----eeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCC-----------
Q 008467 315 HKGPIFSLKWNKKGDYLLT-----GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTD----------- 378 (564)
Q Consensus 315 h~~~V~~l~~~~~~~~l~s-----~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----------- 378 (564)
|...+.+++|||+|++|+- |+...+|++||+.+++.+... ........+.|.++..|+.++.+
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWLGNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEETTTEEEEEESSCCC-------C
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEeCCCEEEEEEecCcccccccccC
Confidence 5567888999999998873 333357999999999865431 11111234567744556555554
Q ss_pred --CeEEEEEcCCCce--eeEec--C-CCcceEEEEECCCCCEEEEEeC----CCcEEEEeCCCCe-eeeecccccccEEE
Q 008467 379 --NMIYVCKIGENRP--IKTFA--G-HQGEVNCVKWDPTGSLLASCSD----DVTAKIWNMKQDK-YVHDLREHSKEIYT 446 (564)
Q Consensus 379 --~~i~~~~~~~~~~--~~~~~--~-h~~~i~~v~~~~~~~~las~s~----dg~i~iwd~~~~~-~~~~~~~~~~~i~~ 446 (564)
..|++|++++... ...+. . |...+..+.|+|||++|+..+. +..|.+||+.++. ....+..+......
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~ 285 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVS 285 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEE
T ss_pred CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEE
Confidence 3489999887642 33333 3 4445788999999998754332 3488999987653 33445555554444
Q ss_pred EEEccCCCCCCCCCCcEEEEEEeCC---CeEEEEeCCCCeE--EEEEeCCCCCEEEEEEcCCCCEEEEEeCCC---cEEE
Q 008467 447 IRWSPTGSGTNNPNQQLILASASFD---STVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLASGSLDK---SMHI 518 (564)
Q Consensus 447 i~~~p~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~--~~~~~~h~~~i~~~~~spdg~~lasgs~dg---~i~i 518 (564)
. |++++. .+++....+ +.|..||+.++.. ...+..|...+. .|+|++++|+....++ .|++
T Consensus 286 ~-~~~~g~--------~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~ 354 (693)
T 3iuj_A 286 L-VDNKGS--------TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQ 354 (693)
T ss_dssp E-EEEETT--------EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEE
T ss_pred E-EeccCC--------EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEE
Confidence 4 555543 244455443 6899999987653 245666666655 8999999888766543 7899
Q ss_pred EeCCCCeEEEEEe--cCCCEEEEEEccCCCEEEEEEcC----CcEEEEEe
Q 008467 519 WSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIAACFAN----HTVCVLDF 562 (564)
Q Consensus 519 w~~~~~~~~~~~~--~~~~i~~~~w~~~g~~la~~~~~----~~v~v~~~ 562 (564)
|++..+. ...+. ..+.+..++++++++.|+..+.+ +++..+|+
T Consensus 355 ~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~ 403 (693)
T 3iuj_A 355 FDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP 403 (693)
T ss_dssp ECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred EECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence 9987554 34443 33457788999999988888766 67777775
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.38 E-value=2.8e-10 Score=114.82 Aligned_cols=237 Identities=12% Similarity=0.156 Sum_probs=158.8
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467 217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 296 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 296 (564)
.....++|+|+++++++...++.|++|++.++... .+. .. ..... ++|+++++.|+++..+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~-----------~~~--~~-----~~~~~-ia~~~~g~~l~~~d~~ 191 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT-----------TVH--PG-----FKGGK-PAVTKDKQRVYSIGWE 191 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE-----------EEE--ET-----CCBCB-CEECTTSSEEEEEBSS
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE-----------Eee--cc-----CCCCc-eeEecCCCcEEEEecC
Confidence 45789999999998888888899999998754311 111 01 11223 8999999999998887
Q ss_pred C--eEEEEECCCcee-Eee----cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCC
Q 008467 297 G--QARIWSTNGDLK-CTL----SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN 369 (564)
Q Consensus 297 g--~i~vw~~~~~~~-~~~----~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (564)
+ .|.+|+..+... ..+ ..+...+.+++++|++..|+.+..++.|..||+.++... .+....
T Consensus 192 ~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~~~~~~----------- 259 (409)
T 3hrp_A 192 GTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-LIKQLE----------- 259 (409)
T ss_dssp TTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-EEEECC-----------
T ss_pred CCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-EEeccc-----------
Confidence 6 788888654322 222 224456688999996666666777889999998765421 110000
Q ss_pred ceEEEEeCCCeEEEEEcCCCceeeEecCCCcc--eEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeeeeeccccc-----
Q 008467 370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGE--VNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHS----- 441 (564)
Q Consensus 370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~--i~~v~~~~~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~~----- 441 (564)
..++... .+.++|+|+ +.++++-+.++.|+.|+.... +..+.++.
T Consensus 260 -------------------------~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~ 312 (409)
T 3hrp_A 260 -------------------------LSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTV 312 (409)
T ss_dssp -------------------------CCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSC
T ss_pred -------------------------ccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCc
Confidence 0011111 137889994 666677777888999987643 22222221
Q ss_pred ----------ccEEEEEEccCCCCCCCCCCcEEEEEEe-CCCeEEEEeCCCCeEEEEEeCC---------------CCCE
Q 008467 442 ----------KEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVELGKLLYSLNGH---------------REPV 495 (564)
Q Consensus 442 ----------~~i~~i~~~p~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~h---------------~~~i 495 (564)
.....++++|++. ++++-+ .++.|+.|++.++.. .++.++ -...
T Consensus 313 ~dg~~~~~~~~~P~gia~d~dG~---------lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P 382 (409)
T 3hrp_A 313 QDGLREEALFAQPNGMTVDEDGN---------FYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYP 382 (409)
T ss_dssp BCEEGGGCBCSSEEEEEECTTCC---------EEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSE
T ss_pred CCCcccccEeCCCeEEEEeCCCC---------EEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCc
Confidence 2367889988774 566666 789999999877774 344333 2357
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467 496 YSLAFSPTGEYLASGSLDKSMHIWSL 521 (564)
Q Consensus 496 ~~~~~spdg~~lasgs~dg~i~iw~~ 521 (564)
..|+++|+|.++++-..+++|+.+++
T Consensus 383 ~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 383 YDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred eEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 89999999988888888888887765
No 218
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.37 E-value=6.1e-10 Score=107.33 Aligned_cols=226 Identities=12% Similarity=0.115 Sum_probs=146.2
Q ss_pred CccceEEEEECCC-CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEE
Q 008467 215 HTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 293 (564)
Q Consensus 215 h~~~V~~~~~sp~-~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg 293 (564)
+..-..+..|+|+ +.++++...++.|..|+..++.. . ... ....+.+++++++|+++++
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~---------~--~~~--------~~~~~~~i~~~~dG~l~v~- 70 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV---------Q--RVT--------MDAPVSSVALRQSGGYVAT- 70 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE---------E--EEE--------CSSCEEEEEEBTTSSEEEE-
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE---------E--EEe--------CCCceEEEEECCCCCEEEE-
Confidence 3344568899996 55677777889999999875431 0 110 1246899999999996554
Q ss_pred eCCCeEEEEECCCceeEeecC-----CCCCEEEEEeCCCCCEEEEeeCCC---------cEEEEECCCcceeEEEeeccc
Q 008467 294 SYDGQARIWSTNGDLKCTLSK-----HKGPIFSLKWNKKGDYLLTGSCDK---------TAIVWDVKTEEWKQQFEFHSG 359 (564)
Q Consensus 294 ~~dg~i~vw~~~~~~~~~~~~-----h~~~V~~l~~~~~~~~l~s~s~D~---------~v~iwd~~~~~~~~~~~~~~~ 359 (564)
. ++.|.+|+........+.. ....+..++++|+|+.+++...+. .-.+|.+..
T Consensus 71 ~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~------------ 137 (297)
T 3g4e_A 71 I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP------------ 137 (297)
T ss_dssp E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT------------
T ss_pred E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC------------
Confidence 3 5688999976443333221 123477899999998665443221 122222211
Q ss_pred CeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEE-EEEeCCCcEEEEeC--CCCee---
Q 008467 360 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNM--KQDKY--- 433 (564)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l-as~s~dg~i~iwd~--~~~~~--- 433 (564)
...+..+..+....+.++|+|+++.| ++.+.++.|.+|++ .++..
T Consensus 138 -----------------------------~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~ 188 (297)
T 3g4e_A 138 -----------------------------DHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNR 188 (297)
T ss_dssp -----------------------------TSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEE
T ss_pred -----------------------------CCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCc
Confidence 00111111122345789999999865 55666889999987 34432
Q ss_pred --eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEc-CCCCEEEEE
Q 008467 434 --VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS-PTGEYLASG 510 (564)
Q Consensus 434 --~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~s-pdg~~lasg 510 (564)
...+..+......+++.++|. +.++....+.|..||..+++.+..+..+...+++++|+ ||++.|..+
T Consensus 189 ~~~~~~~~~~~~p~g~~~d~~G~---------lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt 259 (297)
T 3g4e_A 189 RSVYKLEKEEQIPDGMCIDAEGK---------LWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVT 259 (297)
T ss_dssp EEEEECCGGGCEEEEEEEBTTSC---------EEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEE
T ss_pred EEEEECCCCCCCCCeeEECCCCC---------EEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEE
Confidence 223333345567888888764 55666677889999999999988888776789999998 898876554
Q ss_pred e
Q 008467 511 S 511 (564)
Q Consensus 511 s 511 (564)
+
T Consensus 260 ~ 260 (297)
T 3g4e_A 260 C 260 (297)
T ss_dssp E
T ss_pred c
Confidence 4
No 219
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.35 E-value=2.1e-10 Score=114.80 Aligned_cols=263 Identities=8% Similarity=0.007 Sum_probs=166.1
Q ss_pred CCCEEEEEeC-C----CeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEee----------CCCcEEEEECCCcc
Q 008467 286 EGTLLATGSY-D----GQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVWDVKTEE 349 (564)
Q Consensus 286 ~g~~l~sg~~-d----g~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D~~v~iwd~~~~~ 349 (564)
++..+.+... + +.|.+.|... +....+..-..| .+.++|+|++++.+. .++.|.++|..+++
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~ 160 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL 160 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence 4554444443 2 6899999764 455555544556 899999999988776 36789999999999
Q ss_pred eeEEEeec-------ccCeEEEEcCC--CceEEEEeC-CCeEEEEEcCCCceeeEecCCCcceEEEEECCCC-CEEEEEe
Q 008467 350 WKQQFEFH-------SGPTLDVDWRN--NVSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCS 418 (564)
Q Consensus 350 ~~~~~~~~-------~~~~~~~~~~~--~~~~~~~~~-d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~las~s 418 (564)
.+..+... ......+.+.+ ...|++... ++.|.+.|..+.+.+..+.--. +....|++ ..+++.+
T Consensus 161 vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~~ 236 (426)
T 3c75_H 161 PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMNC 236 (426)
T ss_dssp EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEEE
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEEc
Confidence 88877643 11122333333 333444433 6889999999988877665311 12233333 4556666
Q ss_pred CCCcEEEEeCCCCeeeee----cccccccE-EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE--EEeC-
Q 008467 419 DDVTAKIWNMKQDKYVHD----LREHSKEI-YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY--SLNG- 490 (564)
Q Consensus 419 ~dg~i~iwd~~~~~~~~~----~~~~~~~i-~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~- 490 (564)
.||++.+.+..+++.... +.....++ ..+.+.+++. .+++ .+..+.|.+.|...+.... .+.-
T Consensus 237 ~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~--------~~~~-~s~~g~V~ViD~~~~~~~v~~~~~~~ 307 (426)
T 3c75_H 237 RDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSG--------RLVW-PTYTGKIFQADLTAEGATFRAPIEAL 307 (426)
T ss_dssp TTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTC--------EEEE-EBTTSEEEEEEECSSCEEECCCEESS
T ss_pred CCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCC--------EEEE-EeCCCcEEEEeccCCceEEeeeeeec
Confidence 777777777644443311 11111111 1123444432 2333 3567899999987554321 1110
Q ss_pred --C-------CCCEEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCC-EEEE
Q 008467 491 --H-------REPVYSLAFSPTGEYLASGSL----------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD-KIAA 550 (564)
Q Consensus 491 --h-------~~~i~~~~~spdg~~lasgs~----------dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~-~la~ 550 (564)
. ......++|+|||+.+.++.. ++.|.++|+.+++.++++........++|+|||+ +|.+
T Consensus 308 ~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv 387 (426)
T 3c75_H 308 TEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYA 387 (426)
T ss_dssp CTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEE
T ss_pred cccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEE
Confidence 0 011223689999987766532 3579999999999999998766788999999999 8877
Q ss_pred EE-cCCcEEEEEee
Q 008467 551 CF-ANHTVCVLDFR 563 (564)
Q Consensus 551 ~~-~~~~v~v~~~~ 563 (564)
+. .++.|.|||.+
T Consensus 388 ~n~~s~~VsVID~~ 401 (426)
T 3c75_H 388 LSAGTQTLHIYDAA 401 (426)
T ss_dssp EETTTTEEEEEETT
T ss_pred EcCCCCeEEEEECC
Confidence 76 58999999964
No 220
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.35 E-value=7.5e-11 Score=127.77 Aligned_cols=243 Identities=16% Similarity=0.142 Sum_probs=151.6
Q ss_pred cCCccceEEEEECCCCCEEEEE-----ECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467 213 EGHTSEVCACAWSPAGSLLASG-----SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 287 (564)
Q Consensus 213 ~~h~~~V~~~~~sp~~~~lasg-----s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 287 (564)
.+|...+..++|||||++||.+ +.+..|++||+.++.... ..+... ....++|+ ||
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~---------~~~~~~---------k~~~~~Ws-Dg 185 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE---------TPLKDV---------KFSGISWL-GN 185 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE---------EEEEEE---------ESCCCEEE-TT
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc---------cccCCc---------eeccEEEe-CC
Confidence 3566778899999999988843 334689999998865210 001000 02456899 99
Q ss_pred CEEEEEeCCCe-------------EEEEECCCce---eEe--ecC-CCCCEEEEEeCCCCCEEEEeeC----CCcEEEEE
Q 008467 288 TLLATGSYDGQ-------------ARIWSTNGDL---KCT--LSK-HKGPIFSLKWNKKGDYLLTGSC----DKTAIVWD 344 (564)
Q Consensus 288 ~~l~sg~~dg~-------------i~vw~~~~~~---~~~--~~~-h~~~V~~l~~~~~~~~l~s~s~----D~~v~iwd 344 (564)
+.|+.++.+.. |++|+..... ... ... |...+.++.|+|+|++|+..+. ++.|.+||
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d 265 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKD 265 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEE
Confidence 99999888743 8999875432 222 233 4455788999999998764432 24677777
Q ss_pred CCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEE-EEeCC---
Q 008467 345 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDD--- 420 (564)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~la-s~s~d--- 420 (564)
+.++.. ....+..+....... |+++|..|+ +...+
T Consensus 266 ~~~~~~----------------------------------------~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~ 304 (693)
T 3iuj_A 266 LSQENA----------------------------------------PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPN 304 (693)
T ss_dssp TTSTTC----------------------------------------CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTT
T ss_pred CCCCCC----------------------------------------ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCC
Confidence 755420 111222233333333 455555544 33333
Q ss_pred CcEEEEeCCCCee--eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEEe-CCCCCE
Q 008467 421 VTAKIWNMKQDKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLN-GHREPV 495 (564)
Q Consensus 421 g~i~iwd~~~~~~--~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~-~h~~~i 495 (564)
+.|..|++.++.. ...+..|...+. .|+|++. .++++...++ .|++||+..+ ....+. .....+
T Consensus 305 ~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~--------~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~ 373 (693)
T 3iuj_A 305 RRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSG--------YLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSV 373 (693)
T ss_dssp CEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETT--------EEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEE
T ss_pred CEEEEEeCCCCCccccEEEecCCCCEE--EEEEECC--------EEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceE
Confidence 5788899887643 234555655554 7888764 3445555555 6889998744 444443 234557
Q ss_pred EEEEEcCCCCEEEEEeCC----CcEEEEeCCCCeE
Q 008467 496 YSLAFSPTGEYLASGSLD----KSMHIWSLKEGKI 526 (564)
Q Consensus 496 ~~~~~spdg~~lasgs~d----g~i~iw~~~~~~~ 526 (564)
..++++|++..|+....+ ++|+.||+.+++.
T Consensus 374 ~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 374 SGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 788889998877655443 7899999988764
No 221
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.32 E-value=3.9e-10 Score=109.14 Aligned_cols=234 Identities=15% Similarity=0.084 Sum_probs=144.7
Q ss_pred CceeEccCCccceEEEEECCCCC-EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC
Q 008467 207 SDVTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 285 (564)
Q Consensus 207 ~~~~~l~~h~~~V~~~~~sp~~~-~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 285 (564)
..+..+..+.......+|+|+++ +++++..++.|..|+. ++.. . .+. .....+..++|++
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~---------~--~~~-------~~~~~~~gl~~d~ 95 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV---------D--VLL-------DATAFTNGNAVDA 95 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE---------E--EEE-------ESCSCEEEEEECT
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE---------E--EEe-------CCCCccceeeECC
Confidence 34444555556678899999998 6777778899999986 3321 1 111 1234588999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCceeEeecCC----CCCEEEEEeCCCCCEEEE----eeCC-------------CcEEEEE
Q 008467 286 EGTLLATGSYDGQARIWSTNGDLKCTLSKH----KGPIFSLKWNKKGDYLLT----GSCD-------------KTAIVWD 344 (564)
Q Consensus 286 ~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s----~s~D-------------~~v~iwd 344 (564)
+|+++++...++.|.+|+.++......... ...+..+.++++|+..+| |..+ +.|..||
T Consensus 96 dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d 175 (305)
T 3dr2_A 96 QQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLP 175 (305)
T ss_dssp TSCEEEEETTTTEEEEECTTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred CCCEEEEECCCCEEEEECCCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEc
Confidence 999777766678899999876543322111 123556888888887765 3221 2233333
Q ss_pred CCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCC----
Q 008467 345 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD---- 420 (564)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~d---- 420 (564)
..++++ ... . .....+.++|+|+++.|+.+...
T Consensus 176 ~~~g~~-----------------------------------------~~~-~-~~~~p~gl~~spdg~~lyv~~~~~~~~ 212 (305)
T 3dr2_A 176 PDGSPL-----------------------------------------QRM-A-DLDHPNGLAFSPDEQTLYVSQTPEQGH 212 (305)
T ss_dssp SSSCCC-----------------------------------------EEE-E-EESSEEEEEECTTSSEEEEEECCC---
T ss_pred CCCCcE-----------------------------------------EEE-e-cCCCCcceEEcCCCCEEEEEecCCcCC
Confidence 332221 111 1 22345679999999977666554
Q ss_pred --CcEEEEeCCCCeee--eec-ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCE
Q 008467 421 --VTAKIWNMKQDKYV--HDL-REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPV 495 (564)
Q Consensus 421 --g~i~iwd~~~~~~~--~~~-~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i 495 (564)
+.|.+|++...... ..+ .........+++.++|. ++ .+..+ .|.+|+.. ++.+..+.... .+
T Consensus 213 ~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~--------lw--v~~~~-gv~~~~~~-g~~~~~~~~~~-~~ 279 (305)
T 3dr2_A 213 GSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW--------LW--SSSGT-GVCVFDSD-GQLLGHIPTPG-TA 279 (305)
T ss_dssp CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC--------EE--ECCSS-EEEEECTT-SCEEEEEECSS-CC
T ss_pred CCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC--------EE--EecCC-cEEEECCC-CCEEEEEECCC-ce
Confidence 68999998654311 011 01112223455655553 23 33344 59999984 77777776554 57
Q ss_pred EEEEEcCCCCEEEEEeCCCc
Q 008467 496 YSLAFSPTGEYLASGSLDKS 515 (564)
Q Consensus 496 ~~~~~spdg~~lasgs~dg~ 515 (564)
.+++|+|+++.|..++.++.
T Consensus 280 ~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 280 SNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp CEEEECTTSCEEEEEETTEE
T ss_pred eEEEEeCCCCEEEEEcCCeE
Confidence 89999999998888877653
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.32 E-value=2.4e-09 Score=104.60 Aligned_cols=221 Identities=11% Similarity=0.011 Sum_probs=139.3
Q ss_pred ceEEEEECCCC-CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467 218 EVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 296 (564)
Q Consensus 218 ~V~~~~~sp~~-~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 296 (564)
-..+.+|+|++ .+++++..++.|.+|+..++.. ..+. ....+.+++|+++|+++++. .+
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-----------~~~~--------~~~~v~~i~~~~dg~l~v~~-~~ 109 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK-----------TVHA--------LPFMGSALAKISDSKQLIAS-DD 109 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-----------EEEE--------CSSCEEEEEEEETTEEEEEE-TT
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-----------EEEE--------CCCcceEEEEeCCCeEEEEE-CC
Confidence 35678999974 5667777788999999865421 0111 12468999999999887754 44
Q ss_pred CeEEEEECCCceeEeecCC-----CCCEEEEEeCCCCCEEEEeeCC----CcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467 297 GQARIWSTNGDLKCTLSKH-----KGPIFSLKWNKKGDYLLTGSCD----KTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 367 (564)
Q Consensus 297 g~i~vw~~~~~~~~~~~~h-----~~~V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (564)
.|.+|+..+.....+... ...+..++++|+|+.+++...+ +...||.+.+++..
T Consensus 110 -gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~---------------- 172 (326)
T 2ghs_A 110 -GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVT---------------- 172 (326)
T ss_dssp -EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEE----------------
T ss_pred -CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEE----------------
Confidence 488999754333323221 2357889999999866654322 11222221122111
Q ss_pred CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEE-EEeCCCcEEEEeCC--CC-e-----eeeecc
Q 008467 368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMK--QD-K-----YVHDLR 438 (564)
Q Consensus 368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~la-s~s~dg~i~iwd~~--~~-~-----~~~~~~ 438 (564)
.+..+....+.++|+|+++.++ +.+.++.|.+|+.. ++ . ....+.
T Consensus 173 --------------------------~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~ 226 (326)
T 2ghs_A 173 --------------------------KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST 226 (326)
T ss_dssp --------------------------EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT
T ss_pred --------------------------EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECC
Confidence 1111122456899999998664 44567899999975 44 2 122232
Q ss_pred cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEc-CCCCEEEEEe
Q 008467 439 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS-PTGEYLASGS 511 (564)
Q Consensus 439 ~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~s-pdg~~lasgs 511 (564)
........+++.++|. +.++...++.|.+||. +++.+..+..+...+++++|+ |+++.|..++
T Consensus 227 ~~~~~p~gi~~d~~G~---------lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 227 GIKGGMDGSVCDAEGH---------IWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp TSSSEEEEEEECTTSC---------EEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred CCCCCCCeeEECCCCC---------EEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence 2334566788877664 4555556789999998 577777777666679999998 8988775544
No 223
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.29 E-value=6.1e-14 Score=139.85 Aligned_cols=256 Identities=15% Similarity=0.115 Sum_probs=139.0
Q ss_pred CCCEEEEEeCCCeEEEEEC-CCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEE-
Q 008467 286 EGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD- 363 (564)
Q Consensus 286 ~g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~- 363 (564)
++..+++++.||.|+.||. .|+.+..+.. +++.+..+..++..+++++.|+.|+.||..+++.+..+..+......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 5678999999999999995 5777666654 45555555667778888899999999999988776555443211000
Q ss_pred -EEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccc
Q 008467 364 -VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK 442 (564)
Q Consensus 364 -~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~ 442 (564)
.....+..+++++.++.++.|+..+++.+..+..+. ...++|++..+++++.|+.|+.||.++++.+..+..+.
T Consensus 86 sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~- 160 (369)
T 2hz6_A 86 SPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD- 160 (369)
T ss_dssp CSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-
T ss_pred CceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-
Confidence 001123345566778899999999888776665543 23456788899999999999999999888665443211
Q ss_pred cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEE-EEEcCCCCEE----EEEeCCCcEE
Q 008467 443 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS-LAFSPTGEYL----ASGSLDKSMH 517 (564)
Q Consensus 443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~-~~~spdg~~l----asgs~dg~i~ 517 (564)
.....+.++. ..+. .++.++.||.|+.||..+|+.++.... ..++.. ..++++|... +.+ ++.++
T Consensus 161 -~~~~~~~~~~----~~~~--~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~~~v~~~~~~--~~~l~ 230 (369)
T 2hz6_A 161 -YAASLPEDDV----DYKM--SHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGLRKVMHINVA--VETLR 230 (369)
T ss_dssp -ECCBCCCCCT----TCCC--CEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSCEEECCEEEE--HHHHH
T ss_pred -ccCccccCCc----cccc--eEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCceEeccceeec--cccee
Confidence 0011111110 0011 355688999999999999999988873 445543 4566777542 222 34566
Q ss_pred EEeCCCCe----EEEEEecCCCEEEEEEcc--CCCEEEEEEcCCcEEEEEe
Q 008467 518 IWSLKEGK----IVKTYTGNGGIFEVCWNK--EGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 518 iw~~~~~~----~~~~~~~~~~i~~~~w~~--~g~~la~~~~~~~v~v~~~ 562 (564)
.+|..+|+ .+..+...+.+. +| .+..|.++..+|.+..++.
T Consensus 231 ~ld~~tG~~~~~~~W~~~~~~~~~----sp~~~~g~lyv~~~~G~l~al~~ 277 (369)
T 2hz6_A 231 YLTFMSGEVGRITKWKYPFPKETE----AKSKLTPTLYVGKYSTSLYASPS 277 (369)
T ss_dssp HHHHHHHHHHHHHTSCCCCCCHHH----HHHHSEEEECBEECSSCEECCEE
T ss_pred eeehhcCCcccceeeeeccCcccc----ccccccceEEEecccCCEEecCc
Confidence 66666665 443333222111 11 2345666666777766654
No 224
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.26 E-value=1.2e-08 Score=101.65 Aligned_cols=303 Identities=9% Similarity=0.058 Sum_probs=182.7
Q ss_pred CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeecccc---ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 008467 227 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT---NEKSKDVTTLDWNGEGTLLATGSYDGQARIWS 303 (564)
Q Consensus 227 ~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~ 303 (564)
.+..++.++.++.+..+|..+++.... .. ..... ......+.+. ...++..++.++.++.|..+|
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~----------~~-~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d 119 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWS----------VS-LAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALN 119 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEE----------EE-CCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeee----------ec-CccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEE
Confidence 356777788889999999877753211 00 00000 0001122211 112356777888999999999
Q ss_pred CC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCe-----EEEEcCCCceEEEEeC
Q 008467 304 TN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT-----LDVDWRNNVSFATSST 377 (564)
Q Consensus 304 ~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 377 (564)
.. |+................. .+..++.++.++.+..+|..+++.+..+....... ..... .+..+..+..
T Consensus 120 ~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~~~v~~g~~ 196 (376)
T 3q7m_A 120 TSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT-AFGAAVVGGD 196 (376)
T ss_dssp TTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE-ETTEEEECCT
T ss_pred CCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE-ECCEEEEEcC
Confidence 75 6665444332211111111 14578888999999999999998776654432110 00011 1345566777
Q ss_pred CCeEEEEEcCCCceeeEecCCCc--c--eE---EEEECC--CCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEE
Q 008467 378 DNMIYVCKIGENRPIKTFAGHQG--E--VN---CVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 448 (564)
Q Consensus 378 d~~i~~~~~~~~~~~~~~~~h~~--~--i~---~v~~~~--~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~ 448 (564)
++.++.++..+++.+-.+..... . +. .+...| .+..+..++.++.+..+|..+++.+..... .....+.
T Consensus 197 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~ 274 (376)
T 3q7m_A 197 NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFI 274 (376)
T ss_dssp TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEE
T ss_pred CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCce
Confidence 88999999888776655432210 0 00 000111 245677788899999999998887655432 2233333
Q ss_pred EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 008467 449 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV 527 (564)
Q Consensus 449 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~ 527 (564)
.. .+ .+..++.++.|..+|..+|+.++..... ...+..... .+..|+.++.+|.|.++|..+|+++
T Consensus 275 ~~-~~----------~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~ 341 (376)
T 3q7m_A 275 VD-GN----------RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFV 341 (376)
T ss_dssp EE-TT----------EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred EE-CC----------EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEE
Confidence 22 11 4566778999999999999998877622 222222222 3567888999999999999999998
Q ss_pred EEEec-CCCEEE-EEEccCCCEEEEEEcCCcEEEEE
Q 008467 528 KTYTG-NGGIFE-VCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 528 ~~~~~-~~~i~~-~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
..+.. ...+.. ... .+..|.++..+|.+..||
T Consensus 342 ~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 342 AQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred EEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 87765 223321 111 356788888899998886
No 225
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.25 E-value=4.3e-10 Score=110.79 Aligned_cols=269 Identities=12% Similarity=0.060 Sum_probs=159.0
Q ss_pred cceEEEEECCCCCEEEEEE--CCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 008467 217 SEVCACAWSPAGSLLASGS--GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 294 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs--~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~ 294 (564)
..+..++++|+|+++++.. .++.++||.+.++... .+.........+...+..++++++|+++++-.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-----------~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~ 85 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-----------PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDN 85 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-----------ESCCCCSSCCCCCSCEEEEEECSSSEEEEEEC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-----------cCCCcccCcccceeEeeEEEEcCCCcEEEEcC
Confidence 5688999999999998864 2344777776532210 00000001112345799999999998777654
Q ss_pred C-----CCeEEEEECC-CceeEeecC------CCCCEEEEEeCCCCCEE-EEee---CCCcEEEEECCCcceeEEEeecc
Q 008467 295 Y-----DGQARIWSTN-GDLKCTLSK------HKGPIFSLKWNKKGDYL-LTGS---CDKTAIVWDVKTEEWKQQFEFHS 358 (564)
Q Consensus 295 ~-----dg~i~vw~~~-~~~~~~~~~------h~~~V~~l~~~~~~~~l-~s~s---~D~~v~iwd~~~~~~~~~~~~~~ 358 (564)
. ++.|.+||.. +.+...+.. +...+..+++++++..+ ++.+ .++.|.+||+.+++....+..|.
T Consensus 86 g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~ 165 (343)
T 2qe8_A 86 GNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYP 165 (343)
T ss_dssp HHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCT
T ss_pred CCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCC
Confidence 4 5789999976 554444432 22345789999865554 5554 67899999998887655443221
Q ss_pred cCeEE-EEc-CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-----
Q 008467 359 GPTLD-VDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD----- 431 (564)
Q Consensus 359 ~~~~~-~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~----- 431 (564)
....+ ..+ .+...|...+.++.+..| ...++.++|+|+++.|+.+..++. ++|.+...
T Consensus 166 ~~~~~~~~~~~~g~~~~~~~~~g~~~~~--------------~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~ 230 (343)
T 2qe8_A 166 GIAPEDIDLVIDGVPVQIGQPDGTVIRP--------------HLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNL 230 (343)
T ss_dssp TTSCCSCCCEETTEECBEECTTSCEECC--------------CCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCT
T ss_pred cccccccceeECCEEEEeccCCCceece--------------ecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCC
Confidence 11000 000 112222223333333221 123678999999998888877663 45543211
Q ss_pred e-----eee--ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC-CCCCEEEEEEcCC
Q 008467 432 K-----YVH--DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-HREPVYSLAFSPT 503 (564)
Q Consensus 432 ~-----~~~--~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~i~~~~~spd 503 (564)
. ... ...++......++++++|. ++++...++.|.+||..+++....... +...+.+++|+++
T Consensus 231 ~~~~~~~~~~~~~~g~~g~pdgia~d~~G~---------l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~ 301 (343)
T 2qe8_A 231 QLTDAELGSKIERYSEKPICDGISIDKDHN---------IYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSD 301 (343)
T ss_dssp TCCHHHHHTTCEEEEECCSCSCEEECTTCC---------EEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTT
T ss_pred CCChhhhhcceEecccCCCCceEEECCCCC---------EEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCC
Confidence 0 000 0011222334566766653 667777889999999956764333332 2456899999999
Q ss_pred CCEEEEEeCCCcEEEEe
Q 008467 504 GEYLASGSLDKSMHIWS 520 (564)
Q Consensus 504 g~~lasgs~dg~i~iw~ 520 (564)
|+++++.+..+.+.+|.
T Consensus 302 g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 302 GYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp SCEEEEECCGGGSGGGB
T ss_pred CcEEEEeCccccccccc
Confidence 99888887665554444
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.24 E-value=1.7e-09 Score=116.17 Aligned_cols=253 Identities=13% Similarity=0.151 Sum_probs=160.7
Q ss_pred CCCEEEEEeCCCeEEEEEC-CCceeEeecCC-C----CCEEEEEeCCCCCEEEEeeC------CCcEEEEECCCcceeEE
Q 008467 286 EGTLLATGSYDGQARIWST-NGDLKCTLSKH-K----GPIFSLKWNKKGDYLLTGSC------DKTAIVWDVKTEEWKQQ 353 (564)
Q Consensus 286 ~g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h-~----~~V~~l~~~~~~~~l~s~s~------D~~v~iwd~~~~~~~~~ 353 (564)
++..++.++.|+.+..+|. .|+.+..+..+ . ..+.+--.- .+..++.++. ++.|+.+|..+++.+-.
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 3567888899999999997 57766655443 1 111110000 2345665554 78999999999998776
Q ss_pred EeecccC----------------------------------eEEEEcCCCceEEEEeCC-------------------Ce
Q 008467 354 FEFHSGP----------------------------------TLDVDWRNNVSFATSSTD-------------------NM 380 (564)
Q Consensus 354 ~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~d-------------------~~ 380 (564)
+...... ...++...+..++ +..+ +.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~-~~~~~~~w~~~~~~~~~gd~~~~~s 284 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYV-GTGNGSPWSHKVRSPKGGDNLYLAS 284 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEE-ECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEE-ECCCCccccCCCCCccCCCCeeeEE
Confidence 6542211 1122222333333 3322 25
Q ss_pred EEEEEcCCCceeeEecC--CC-------cceEEEEECCCC---CEEEEEeCCCcEEEEeCCCCeeeeeccccc-------
Q 008467 381 IYVCKIGENRPIKTFAG--HQ-------GEVNCVKWDPTG---SLLASCSDDVTAKIWNMKQDKYVHDLREHS------- 441 (564)
Q Consensus 381 i~~~~~~~~~~~~~~~~--h~-------~~i~~v~~~~~~---~~las~s~dg~i~iwd~~~~~~~~~~~~~~------- 441 (564)
|+.+|..+++.+-.+.. |. .....+....+| ..++.++.+|.+.++|..+++.+..+....
T Consensus 285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~ 364 (677)
T 1kb0_A 285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGY 364 (677)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred EEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccccc
Confidence 88888888887665543 21 122223334467 678999999999999999998876543211
Q ss_pred ----ccEE------------------------EEEEccCCCCCCCCCCcEEEEEEe------------------------
Q 008467 442 ----KEIY------------------------TIRWSPTGSGTNNPNQQLILASAS------------------------ 469 (564)
Q Consensus 442 ----~~i~------------------------~i~~~p~~~~~~~~~~~~~l~s~s------------------------ 469 (564)
.++. .++++| +..++++...
T Consensus 365 d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp--------~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~ 436 (677)
T 1kb0_A 365 DKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP--------QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQS 436 (677)
T ss_dssp CTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET--------TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTG
T ss_pred CCCCceeeccccCcCCCccEECcCcccccCCCCceEcC--------CCCEEEEeChhcceeeeccccccccccccccccc
Confidence 0110 122333 2233332211
Q ss_pred ------------------CCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q 008467 470 ------------------FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT 531 (564)
Q Consensus 470 ------------------~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~ 531 (564)
..|.|..||+.+++.++++. +..++....++.++..++.++.||.+++||.++|+++..+.
T Consensus 437 ~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 437 GTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp GGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence 12789999999999998886 34455666677888899999999999999999999999987
Q ss_pred cCCCE--EEEEEccCCCEEE
Q 008467 532 GNGGI--FEVCWNKEGDKIA 549 (564)
Q Consensus 532 ~~~~i--~~~~w~~~g~~la 549 (564)
...++ .-+.|..+|+.++
T Consensus 516 ~~~~~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 516 TGTGVVAAPSTYMVDGRQYV 535 (677)
T ss_dssp CSSCCCSCCEEEEETTEEEE
T ss_pred CCCCcccCCEEEEeCCEEEE
Confidence 65443 3567788997444
No 227
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.24 E-value=4.7e-10 Score=109.59 Aligned_cols=296 Identities=14% Similarity=0.070 Sum_probs=183.0
Q ss_pred EECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 008467 223 AWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW 302 (564)
Q Consensus 223 ~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw 302 (564)
....++. |..|+.++.+..|| .++..... .. .....+.++...++|.+.+ ++.+ +..+
T Consensus 26 ~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~-------------~~----~~~~~~~~~~~~~~g~l~v-~t~~--l~~~ 83 (330)
T 3hxj_A 26 ILAKNGT-IYLGSSNKNLYAIN-TDGSVKWF-------------FK----SGEIIECRPSIGKDGTIYF-GSDK--VYAI 83 (330)
T ss_dssp EECTTSC-EECSSTTTTTEEEC-TTSCEEES-------------SC----GGGEEEECCEETTTTEECC-SSCE--EEEE
T ss_pred eEccCCe-EEEEcCCCEEEEEC-CCCcEEEE-------------Ee----cCCCcccceEEecCCcEEE-ecCc--EEEE
Confidence 3444554 45566778888888 65542110 00 0112345666667776544 4444 8888
Q ss_pred ECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEE
Q 008467 303 STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIY 382 (564)
Q Consensus 303 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 382 (564)
+..+.....+............. +..+..++.++.+..+|.. ++....+......+..+....+..+..++.++.++
T Consensus 84 d~~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~ 160 (330)
T 3hxj_A 84 NPDGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLY 160 (330)
T ss_dssp CCCGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEE
T ss_pred CCCCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEE
Confidence 87665443333222222222222 5578888889999999988 66555444433333333333344566677788999
Q ss_pred EEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCc
Q 008467 383 VCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQ 462 (564)
Q Consensus 383 ~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~ 462 (564)
.++.. ++.+..+......+.++...+++.+++.. +.+..+| .+++....+......+.++...+++.
T Consensus 161 ~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-------- 227 (330)
T 3hxj_A 161 AINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-------- 227 (330)
T ss_dssp EECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC--------
T ss_pred EECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe--------
Confidence 99987 66665665555667778888888866544 7899999 66665555544444556666655542
Q ss_pred EEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEE
Q 008467 463 LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCW 541 (564)
Q Consensus 463 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w 541 (564)
|..++.++.|..+|. +++.+..+......+.++.+.++|. |..++.+|.|..+|. +++.+..+... ..+.++..
T Consensus 228 --l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~ 302 (330)
T 3hxj_A 228 --IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVI 302 (330)
T ss_dssp --EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEE
T ss_pred --EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEE
Confidence 455677888988884 5677766665444445566666665 556777888999996 78777766543 33566777
Q ss_pred ccCCCEEEEEEcCCcEEEEEe
Q 008467 542 NKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 542 ~~~g~~la~~~~~~~v~v~~~ 562 (564)
+++|+. .++..+|.+.+...
T Consensus 303 d~~g~l-~~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 303 DENGTI-YFGTRNGKFYALFN 322 (330)
T ss_dssp CTTCCE-EEECTTSCEEEEEC
T ss_pred cCCCEE-EEEcCCCeEEEEec
Confidence 788875 45668888887654
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.24 E-value=2.1e-09 Score=115.77 Aligned_cols=315 Identities=11% Similarity=0.110 Sum_probs=178.9
Q ss_pred CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEC-CC
Q 008467 228 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NG 306 (564)
Q Consensus 228 ~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~-~~ 306 (564)
+..|+.++.++.+.-+|..+|+............ .............+ .. .+..+++++.||.+..+|. .|
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~---~~~~~~~~~~~~~~---~~--~~g~v~v~~~dg~l~AlDa~TG 141 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRH---RAGEACCDAVNRGV---AV--WKGKVYVGVLDGRLEAIDAKTG 141 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGG---GGGGCTTCSCCCCC---EE--ETTEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCcc---ccccccccCCCCcc---EE--ECCEEEEEccCCEEEEEECCCC
Confidence 5667777788889999988776422110000000 00000000000111 11 3567888899999999997 46
Q ss_pred ceeEeecCC--CCCEEEEEeCC---CCCEEEEee------CCCcEEEEECCCcceeEEEeeccc-C--------------
Q 008467 307 DLKCTLSKH--KGPIFSLKWNK---KGDYLLTGS------CDKTAIVWDVKTEEWKQQFEFHSG-P-------------- 360 (564)
Q Consensus 307 ~~~~~~~~h--~~~V~~l~~~~---~~~~l~s~s------~D~~v~iwd~~~~~~~~~~~~~~~-~-------------- 360 (564)
+.+..+... ......+..+| ++ .++.++ .++.|..||+.+++.+-.+..... +
T Consensus 142 ~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~ 220 (689)
T 1yiq_A 142 QRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAK 220 (689)
T ss_dssp CEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHT
T ss_pred CEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccc
Confidence 665444321 11111111122 34 455443 378999999999998766543110 0
Q ss_pred ------------------eEEEEcCCCceEEEEeCCC-------------------eEEEEEcCCCceeeEecC--CC--
Q 008467 361 ------------------TLDVDWRNNVSFATSSTDN-------------------MIYVCKIGENRPIKTFAG--HQ-- 399 (564)
Q Consensus 361 ------------------~~~~~~~~~~~~~~~~~d~-------------------~i~~~~~~~~~~~~~~~~--h~-- 399 (564)
...++... ..+..+..++ .|+.+|..+++.+-.+.. |.
T Consensus 221 ~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~w 299 (689)
T 1yiq_A 221 TWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAW 299 (689)
T ss_dssp TCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCS
T ss_pred ccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccc
Confidence 11122222 3344444443 488999999887766653 21
Q ss_pred -----cceEEEEECCCCC---EEEEEeCCCcEEEEeCCCCeeeeeccccc-ccEEEEE----------------------
Q 008467 400 -----GEVNCVKWDPTGS---LLASCSDDVTAKIWNMKQDKYVHDLREHS-KEIYTIR---------------------- 448 (564)
Q Consensus 400 -----~~i~~v~~~~~~~---~las~s~dg~i~iwd~~~~~~~~~~~~~~-~~i~~i~---------------------- 448 (564)
..+.......+|+ .++.++.+|.++++|..+++.+....... .....+.
T Consensus 300 d~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~ 379 (689)
T 1yiq_A 300 DYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRN 379 (689)
T ss_dssp CCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCE
T ss_pred cccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCee
Confidence 1222223233565 78899999999999999998863322110 0000000
Q ss_pred -EccCCC-------CCCCCCCcEEEEEEe--------------------------------------------CCCeEEE
Q 008467 449 -WSPTGS-------GTNNPNQQLILASAS--------------------------------------------FDSTVKL 476 (564)
Q Consensus 449 -~~p~~~-------~~~~~~~~~~l~s~s--------------------------------------------~dg~i~i 476 (564)
..|... ...+|...++++... .+|.|+.
T Consensus 380 ~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A 459 (689)
T 1yiq_A 380 LVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIA 459 (689)
T ss_dssp EESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEE
T ss_pred EeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEE
Confidence 001000 011122222222111 1488999
Q ss_pred EeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCE--EEEEEccCCC-EEEEEEc
Q 008467 477 WDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI--FEVCWNKEGD-KIAACFA 553 (564)
Q Consensus 477 wd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i--~~~~w~~~g~-~la~~~~ 553 (564)
||+.+|+.++++..+. ++....++..|.+++.|+.||.|+.||.++|+++..+....++ .-+.|..+|+ ++++...
T Consensus 460 ~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 460 WDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp EETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred EECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 9999999999887543 4444566778889999999999999999999999998765443 3578889997 4554443
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.22 E-value=1.4e-09 Score=116.87 Aligned_cols=269 Identities=10% Similarity=0.033 Sum_probs=175.4
Q ss_pred CCEEEEEeCCCeEEEEEC-CCceeEeecCCCC-----------CEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467 287 GTLLATGSYDGQARIWST-NGDLKCTLSKHKG-----------PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 354 (564)
Q Consensus 287 g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~-----------~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 354 (564)
+..++.++.++.|..+|. .|+.+-.+..... ...++.. .+..|+.++.|+.+..+|..+++.+-.+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 345556666777887775 3554444332210 0011222 3568888999999999999999988776
Q ss_pred eec-c----cCeE-EEEcCCCceEEEEe-----CCCeEEEEEcCCCceeeEecCCCc-----------------------
Q 008467 355 EFH-S----GPTL-DVDWRNNVSFATSS-----TDNMIYVCKIGENRPIKTFAGHQG----------------------- 400 (564)
Q Consensus 355 ~~~-~----~~~~-~~~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~~~~h~~----------------------- 400 (564)
... . ..+. .....++..++.++ .++.|+.+|..+++.+-.+.....
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~ 234 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK 234 (677)
T ss_dssp ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred cCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCc
Confidence 654 1 0010 00012333444333 268999999988887655542211
Q ss_pred ---------ceEEEEECCCCCEEEEEeCCC-------------------cEEEEeCCCCeeeeeccc--cc-------cc
Q 008467 401 ---------EVNCVKWDPTGSLLASCSDDV-------------------TAKIWNMKQDKYVHDLRE--HS-------KE 443 (564)
Q Consensus 401 ---------~i~~v~~~~~~~~las~s~dg-------------------~i~iwd~~~~~~~~~~~~--~~-------~~ 443 (564)
....++++|++.+|+.++.++ .|..+|.++++.+-.++. |. ..
T Consensus 235 ~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 314 (677)
T 1kb0_A 235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP 314 (677)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCC
Confidence 113578899999988887764 489999999988765543 21 01
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC-----------CCEE----------------
Q 008467 444 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-----------EPVY---------------- 496 (564)
Q Consensus 444 i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-----------~~i~---------------- 496 (564)
..-+....+|. ...+++.++.+|.|+++|..+|+.+....... .++.
T Consensus 315 p~l~~~~~dG~------~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~ 388 (677)
T 1kb0_A 315 MILADIKIAGK------PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG 388 (677)
T ss_dssp CEEEEEEETTE------EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred cEEEecccCCc------EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence 11111112221 01367889999999999999999987765221 1111
Q ss_pred --------EEEEcCCCCEEEEEeC-------------------------------------------CCcEEEEeCCCCe
Q 008467 497 --------SLAFSPTGEYLASGSL-------------------------------------------DKSMHIWSLKEGK 525 (564)
Q Consensus 497 --------~~~~spdg~~lasgs~-------------------------------------------dg~i~iw~~~~~~ 525 (564)
.++|+|++.++++... .|.|..||+.+|+
T Consensus 389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~ 468 (677)
T 1kb0_A 389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK 468 (677)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence 5789999888876543 2789999999999
Q ss_pred EEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 526 IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 526 ~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
++..+.....+....+..+|..+.++..++.+.+||.+
T Consensus 469 ~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~ 506 (677)
T 1kb0_A 469 AAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAA 506 (677)
T ss_dssp EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred EEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECC
Confidence 99888766555666677888999999999999999964
No 230
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.21 E-value=9.5e-10 Score=108.26 Aligned_cols=246 Identities=7% Similarity=-0.066 Sum_probs=156.4
Q ss_pred EEEECCCCCEEEEEe----------CCCeEEEEECC-CceeEeecCC-------CCCEEEEEeCCCCCEEEEeeC--CCc
Q 008467 280 TLDWNGEGTLLATGS----------YDGQARIWSTN-GDLKCTLSKH-------KGPIFSLKWNKKGDYLLTGSC--DKT 339 (564)
Q Consensus 280 ~l~~s~~g~~l~sg~----------~dg~i~vw~~~-~~~~~~~~~h-------~~~V~~l~~~~~~~~l~s~s~--D~~ 339 (564)
.+.++|||+++.++. .++.|.+||.. ++....+... ......+.++|+|++++.+.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 699999999988886 36889999976 4455554322 012357889999999998874 467
Q ss_pred EEE--EECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCC-----Cceee----EecCCCcceEEEEEC
Q 008467 340 AIV--WDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE-----NRPIK----TFAGHQGEVNCVKWD 408 (564)
Q Consensus 340 v~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-----~~~~~----~~~~h~~~i~~v~~~ 408 (564)
+.+ +|+.+ +..+.... . ..+.......|++.+.|+.+.+.+... ++.+. .+.-...+. . +
T Consensus 149 v~V~~iD~~t---v~~i~v~~-~-~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~ 219 (368)
T 1mda_H 149 AGLSVPGASD---DQLTKSAS-C-FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-A 219 (368)
T ss_dssp EEEEETTTEE---EEEEECSS-C-CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-E
T ss_pred EEEEEEchhh---ceEEECCC-c-eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-c
Confidence 888 99877 33332211 1 112223344566667788877777765 22221 011112232 3 5
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCe--eeeeccc-------cc---ccEEEEEEccCCCCCCCCCCcEEEEEEe---C---
Q 008467 409 PTGSLLASCSDDVTAKIWNMKQDK--YVHDLRE-------HS---KEIYTIRWSPTGSGTNNPNQQLILASAS---F--- 470 (564)
Q Consensus 409 ~~~~~las~s~dg~i~iwd~~~~~--~~~~~~~-------~~---~~i~~i~~~p~~~~~~~~~~~~~l~s~s---~--- 470 (564)
+++..++..+. +.+.+.|..+.. .+..+.. +. .....+.++|++. .++++.. .
T Consensus 220 ~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~--------~lyV~~~~~~~~~~ 290 (368)
T 1mda_H 220 NYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD--------GIMILTVEHSRSCL 290 (368)
T ss_dssp TTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT--------EEEEEEEECSSCTT
T ss_pred ccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCC--------EEEEEeccccCccc
Confidence 56666556666 899999986432 2222211 00 1111156777764 2333333 2
Q ss_pred --CCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCC-EEEEEe-CCCcEEEEeCCCCeEEEEEecCCCEEEEEEccC
Q 008467 471 --DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE-YLASGS-LDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE 544 (564)
Q Consensus 471 --dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~-~lasgs-~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~ 544 (564)
++.+.++|+.+++.+.++.... ....|+|+|||+ .+++.. .++.|.++|+.++++++++........+++++.
T Consensus 291 ~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~~~~~ 367 (368)
T 1mda_H 291 AAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQNE 367 (368)
T ss_dssp SCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECCCC
T ss_pred ccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCEEEeecC
Confidence 2356699999999888775433 578999999997 456666 599999999999999999887666677776653
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.21 E-value=2.6e-09 Score=115.00 Aligned_cols=269 Identities=11% Similarity=0.064 Sum_probs=174.9
Q ss_pred CCEEEEEeCCCeEEEEEC-CCceeEeecCCCC----------CE-EEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467 287 GTLLATGSYDGQARIWST-NGDLKCTLSKHKG----------PI-FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 354 (564)
Q Consensus 287 g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~----------~V-~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 354 (564)
+..+++++.++.|..+|. .|+.+-.+..+.. .+ .++.. .+..++.++.|+.|..+|..+++.+-.+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 456666777888888886 4665555432211 00 01111 3568888999999999999999987666
Q ss_pred eec-c-cCeEE----EEcCCCceEEEEe-----CCCeEEEEEcCCCceeeEecCC-------------------------
Q 008467 355 EFH-S-GPTLD----VDWRNNVSFATSS-----TDNMIYVCKIGENRPIKTFAGH------------------------- 398 (564)
Q Consensus 355 ~~~-~-~~~~~----~~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~~~~h------------------------- 398 (564)
... . ..... ....++..++.++ .++.|+.+|..+++.+-.+..-
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w 227 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY 227 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence 542 1 00000 0112333444332 3689999999888876554310
Q ss_pred ------CcceEEEEECCCCCEEEEEeCCCc-------------------EEEEeCCCCeeeeeccc--cc-------ccE
Q 008467 399 ------QGEVNCVKWDPTGSLLASCSDDVT-------------------AKIWNMKQDKYVHDLRE--HS-------KEI 444 (564)
Q Consensus 399 ------~~~i~~v~~~~~~~~las~s~dg~-------------------i~iwd~~~~~~~~~~~~--~~-------~~i 444 (564)
......++++|+..+|+.++.++. |..||.++++.+-.+.. |. .+.
T Consensus 228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~ 307 (689)
T 1yiq_A 228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM 307 (689)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence 011125788999999999988764 99999999988766543 21 111
Q ss_pred EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCC------------C------------------
Q 008467 445 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE------------P------------------ 494 (564)
Q Consensus 445 ~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~------------~------------------ 494 (564)
.......+|. ...+++.++.+|.++++|.++|+.+....-... +
T Consensus 308 ~l~d~~~~G~------~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~ 381 (689)
T 1yiq_A 308 ILAELPIDGK------PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLV 381 (689)
T ss_dssp EEEEEEETTE------EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEE
T ss_pred EEEeeccCCc------EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEe
Confidence 1111111221 012578899999999999999998854321110 0
Q ss_pred ---------EEEEEEcCCCCEEEEEeC---------------------------------------------CCcEEEEe
Q 008467 495 ---------VYSLAFSPTGEYLASGSL---------------------------------------------DKSMHIWS 520 (564)
Q Consensus 495 ---------i~~~~~spdg~~lasgs~---------------------------------------------dg~i~iw~ 520 (564)
-..++|+|+...+++.+. +|.|..||
T Consensus 382 ~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D 461 (689)
T 1yiq_A 382 TPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWD 461 (689)
T ss_dssp SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEE
T ss_pred CCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEE
Confidence 112789998887776532 37899999
Q ss_pred CCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 521 LKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 521 ~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
+.+|+++..+........-.+...|..+++|+.|+.+++||.+
T Consensus 462 ~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~ 504 (689)
T 1yiq_A 462 PVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAAD 504 (689)
T ss_dssp TTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred CCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECC
Confidence 9999999888766555555677889999999999999999964
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.16 E-value=2.1e-11 Score=121.38 Aligned_cols=203 Identities=13% Similarity=0.095 Sum_probs=120.3
Q ss_pred CCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc-CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcc-eE-
Q 008467 327 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE-VN- 403 (564)
Q Consensus 327 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~-i~- 403 (564)
++..+++++.|+.|..||..+++.+..+.. +.+..... .++..+++++.|+.++.|+..+++.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 467899999999999999999998877765 33332222 23446677789999999999877766555443221 11
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe
Q 008467 404 CVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 483 (564)
Q Consensus 404 ~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 483 (564)
+..+. ++..|++|+.|+.+..||..+++.+..+..+. ...++|.+ ..+++++.|+.|+.||.++|+
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~---------~~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPST---------SLLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC-----------------------------------EEEEEEEEEEECCCSSSSS
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccC---------CEEEEEecCCEEEEEECCCCC
Confidence 11111 34567788899999999999998876665443 12334422 256778889999999999998
Q ss_pred EEEEEeCCCCCEEEEEEcCCC---CEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEE-EEEEccCCCE
Q 008467 484 LLYSLNGHREPVYSLAFSPTG---EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF-EVCWNKEGDK 547 (564)
Q Consensus 484 ~~~~~~~h~~~i~~~~~spdg---~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~-~~~w~~~g~~ 547 (564)
.++.+..+. ....++++++ ..+++++.||.|+.||..+|+++..+.....+. ..+++++|..
T Consensus 152 ~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 152 LRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR 217 (369)
T ss_dssp CCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred EEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceE
Confidence 876654221 1223344432 567778999999999999999988887655554 3456667653
No 233
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.06 E-value=4.4e-07 Score=85.58 Aligned_cols=248 Identities=11% Similarity=-0.005 Sum_probs=150.0
Q ss_pred CEEEEEeCCCeEEEEECCCceeE------eecCCCCCEEEEEeCCCCCEEEE-eeCCCcEEEEECCCcceeEEEeecccC
Q 008467 288 TLLATGSYDGQARIWSTNGDLKC------TLSKHKGPIFSLKWNKKGDYLLT-GSCDKTAIVWDVKTEEWKQQFEFHSGP 360 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~~~~~~------~~~~h~~~V~~l~~~~~~~~l~s-~s~D~~v~iwd~~~~~~~~~~~~~~~~ 360 (564)
.+|+.+.. +.|+.++.++.... .+......+.+++|++++..|+. -...+.|..+++.+......+......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34444443 46777777654321 12212234678999997766654 445689999998766543332221122
Q ss_pred e--EEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC---CCcEEEEeCCCCeeee
Q 008467 361 T--LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD---DVTAKIWNMKQDKYVH 435 (564)
Q Consensus 361 ~--~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~---dg~i~iwd~~~~~~~~ 435 (564)
. +.+++.....+++....+.|.+++...................++++|++..|..+.. .+.|..+++.......
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~ 160 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI 160 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE
Confidence 3 3445555667777778889999988654322222222245788999996555444433 4678888876433211
Q ss_pred ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 008467 436 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS 515 (564)
Q Consensus 436 ~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~ 515 (564)
...........++++|++. .+.++-...+.|.++|.........+.+. .....++.. .+..+++....+.
T Consensus 161 ~~~~~~~~P~gia~d~~~~--------~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~~P~gi~~d-~~~lyva~~~~~~ 230 (267)
T 1npe_A 161 LAQDNLGLPNGLTFDAFSS--------QLCWVDAGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSY-GKNLYYTDWKTNS 230 (267)
T ss_dssp EECTTCSCEEEEEEETTTT--------EEEEEETTTTEEEEEETTEEEEEEEEECC-CSEEEEEEE-TTEEEEEETTTTE
T ss_pred EEECCCCCCcEEEEcCCCC--------EEEEEECCCCEEEEEecCCCceEEEecCC-CCceEEEEe-CCEEEEEECCCCe
Confidence 1112223467888888653 35566667789999999754433333332 234667664 3344444445689
Q ss_pred EEEEeCCCCeEEEEEecCC--CEEEEEEccCCC
Q 008467 516 MHIWSLKEGKIVKTYTGNG--GIFEVCWNKEGD 546 (564)
Q Consensus 516 i~iw~~~~~~~~~~~~~~~--~i~~~~w~~~g~ 546 (564)
|.+++..+|+.+.++.... ..+.+++.|++.
T Consensus 231 v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 231 VIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 9999999999988886432 467888888875
No 234
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.06 E-value=1.1e-07 Score=94.75 Aligned_cols=260 Identities=8% Similarity=0.031 Sum_probs=161.7
Q ss_pred CCEEEEEeCCCeEEEEECC-CceeEeecCC---------CCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee
Q 008467 287 GTLLATGSYDGQARIWSTN-GDLKCTLSKH---------KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 356 (564)
Q Consensus 287 g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h---------~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 356 (564)
+..+++++.++.|..+|.. |+........ ...+.+. ....+..++.++.++.|..+|..+++..-.+..
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 5667778888999999974 6655444321 1223221 122456788899999999999999987765554
Q ss_pred cccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcce-----EEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008467 357 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV-----NCVKWDPTGSLLASCSDDVTAKIWNMKQD 431 (564)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i-----~~v~~~~~~~~las~s~dg~i~iwd~~~~ 431 (564)
.......... .+..++.++.++.++.++..+++.+-.+....... ...... +..++.++.++.+..+|..++
T Consensus 132 ~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG 208 (376)
T 3q7m_A 132 AGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQG 208 (376)
T ss_dssp SSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTC
T ss_pred CCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCC
Confidence 3221111111 13456667788999999998887665554322111 111222 346777888999999999988
Q ss_pred eeeeeccccccc----EEE---EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCC
Q 008467 432 KYVHDLREHSKE----IYT---IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG 504 (564)
Q Consensus 432 ~~~~~~~~~~~~----i~~---i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg 504 (564)
+.+......... +.. +.-.|. . .+. .+..++.++.+..+|..+|+.++.... .....+.. ++
T Consensus 209 ~~~w~~~~~~~~~~~~~~~~~~~~~~p~-----~-~~~-~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~ 277 (376)
T 3q7m_A 209 QMIWQQRISQATGSTEIDRLSDVDTTPV-----V-VNG-VVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DG 277 (376)
T ss_dssp CEEEEEECCC-----------CCCCCCE-----E-ETT-EEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ET
T ss_pred cEEEEEecccCCCCcccccccccCCCcE-----E-ECC-EEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--EC
Confidence 876554322110 000 000010 0 011 356677899999999999998887653 23444444 46
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEec-CC-CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 505 EYLASGSLDKSMHIWSLKEGKIVKTYTG-NG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 505 ~~lasgs~dg~i~iw~~~~~~~~~~~~~-~~-~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
..|..++.++.|..+|..+|+.+..... .. .+..+.. .+..|.++..+|.+.++|.+
T Consensus 278 ~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~ 336 (376)
T 3q7m_A 278 NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVE 336 (376)
T ss_dssp TEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETT
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECC
Confidence 6788888899999999999998877652 11 1222222 35678888888888888853
No 235
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.98 E-value=1.9e-08 Score=99.05 Aligned_cols=220 Identities=8% Similarity=-0.067 Sum_probs=137.0
Q ss_pred cEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEe---------CCCeEEEEEcCCCceeeEecCC-------Ccce
Q 008467 339 TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSS---------TDNMIYVCKIGENRPIKTFAGH-------QGEV 402 (564)
Q Consensus 339 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~d~~i~~~~~~~~~~~~~~~~h-------~~~i 402 (564)
+|.++|..+++.+..+.....+-+.+.+.....|++.. .++.|.++|..+.+.+.++.-. ....
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P 126 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV 126 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCT
T ss_pred eEEEEECCCCeEEEEEeCCCCCceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCc
Confidence 88899999999999888776674444444555566552 4788999999999988887533 1234
Q ss_pred EEEEECCCCCEEEEEeC--CCcEEE--EeCCCCeeeeecccc------------------cccEEEEEEcc----CCCCC
Q 008467 403 NCVKWDPTGSLLASCSD--DVTAKI--WNMKQDKYVHDLREH------------------SKEIYTIRWSP----TGSGT 456 (564)
Q Consensus 403 ~~v~~~~~~~~las~s~--dg~i~i--wd~~~~~~~~~~~~~------------------~~~i~~i~~~p----~~~~~ 456 (564)
..++++|||++++.+.. +..+.+ +|..+ +..+... .+.+..+.... ++...
T Consensus 127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~ 203 (368)
T 1mda_H 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG 203 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEE
Confidence 57899999999888864 457888 99866 2222110 00111111111 00000
Q ss_pred ------C--------CCCCcEEEEEEeCCCeEEEEeCCCCe--EEEEEeC-------CC---CCEEEEEEcCCCCEEEEE
Q 008467 457 ------N--------NPNQQLILASASFDSTVKLWDVELGK--LLYSLNG-------HR---EPVYSLAFSPTGEYLASG 510 (564)
Q Consensus 457 ------~--------~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~-------h~---~~i~~~~~spdg~~lasg 510 (564)
. .+....++ ..+. +.|.+.|+..+. .+..+.- +. .....++|+|||+.+..+
T Consensus 204 ~~~t~~i~vg~~P~~~~~~~~~~-~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~ 281 (368)
T 1mda_H 204 AQCTGAQNCSSQAAQANYPGMLV-WAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL 281 (368)
T ss_dssp CCSCTTSCBCSCCEEETTTTEEE-ECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred EEeeeeeeCCCCccccccCCEEE-EEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEE
Confidence 0 01111122 2223 667777775432 2221110 00 011126899999887765
Q ss_pred eC---------CCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCE-EEEEE-cCCcEEEEEee
Q 008467 511 SL---------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDK-IAACF-ANHTVCVLDFR 563 (564)
Q Consensus 511 s~---------dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~-la~~~-~~~~v~v~~~~ 563 (564)
.. ++.+.++|+.+++.++.+........++|+|||++ ++++. .++.|.|||.+
T Consensus 282 ~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 282 TVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp EEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred eccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence 32 23566999999999988876667889999999984 55555 58999999975
No 236
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.97 E-value=3.4e-07 Score=90.59 Aligned_cols=219 Identities=14% Similarity=0.186 Sum_probs=143.9
Q ss_pred CCCCEEE-EeeCCCcEEEEECCCc----ceeEEEe---e----cccCeEEEEcCCCceEEEEeCC------CeEEEEEcC
Q 008467 326 KKGDYLL-TGSCDKTAIVWDVKTE----EWKQQFE---F----HSGPTLDVDWRNNVSFATSSTD------NMIYVCKIG 387 (564)
Q Consensus 326 ~~~~~l~-s~s~D~~v~iwd~~~~----~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~d------~~i~~~~~~ 387 (564)
+++++|+ ++-.+++|.++|+.+. +....++ . .......+...++..++++..+ +.+.+.|..
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~ 172 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHY 172 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECC
Confidence 7777765 5667789999998765 4555552 1 0011222333333355655544 789999999
Q ss_pred CCceeeEecCCCc---ceEEEEECCCCCEEEEEe-------------------CCCcEEEEeCCCCeeeeecccc--ccc
Q 008467 388 ENRPIKTFAGHQG---EVNCVKWDPTGSLLASCS-------------------DDVTAKIWNMKQDKYVHDLREH--SKE 443 (564)
Q Consensus 388 ~~~~~~~~~~h~~---~i~~v~~~~~~~~las~s-------------------~dg~i~iwd~~~~~~~~~~~~~--~~~ 443 (564)
+.+.+..+....+ .--.+.|+|+++.+++.. .+.+|.+||+.+++.+.++..- ...
T Consensus 173 T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~ 252 (462)
T 2ece_A 173 SFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRM 252 (462)
T ss_dssp TCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEE
T ss_pred CCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCc
Confidence 8888887762212 123477899999888874 3689999999988877766542 123
Q ss_pred EEEEEE--ccCCCCCCCCCCcEEEEEEe-----CCCeEEEEeCCCCeEE--EE--EeCC----------------CCCEE
Q 008467 444 IYTIRW--SPTGSGTNNPNQQLILASAS-----FDSTVKLWDVELGKLL--YS--LNGH----------------REPVY 496 (564)
Q Consensus 444 i~~i~~--~p~~~~~~~~~~~~~l~s~s-----~dg~i~iwd~~~~~~~--~~--~~~h----------------~~~i~ 496 (564)
...++| +|++. ...+++- .+++|.+|....++.. .. +... .....
T Consensus 253 P~~i~f~~~Pdg~--------~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 253 ALELRPLHDPTKL--------MGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp EEEEEECSSTTCC--------EEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred cceeEeeECCCCC--------EEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 345555 67664 4555565 7788988776554321 11 1110 13467
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEeCCC---CeEEEEEecCC---------------CEEEEEEccCCCEEEEEE
Q 008467 497 SLAFSPTGEYLASGSL-DKSMHIWSLKE---GKIVKTYTGNG---------------GIFEVCWNKEGDKIAACF 552 (564)
Q Consensus 497 ~~~~spdg~~lasgs~-dg~i~iw~~~~---~~~~~~~~~~~---------------~i~~~~w~~~g~~la~~~ 552 (564)
.|.+||||++|.++.. .+.|.+||+.+ .+++......+ ....++++|||++|.++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 8999999999977664 68999999853 35666554431 357899999999999987
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.94 E-value=1.1e-08 Score=99.79 Aligned_cols=254 Identities=14% Similarity=0.065 Sum_probs=157.2
Q ss_pred ECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeE
Q 008467 283 WNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 362 (564)
Q Consensus 283 ~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 362 (564)
...+|. +..++.++.|..|+..+........+...+.++...++|. |..++.+ +..+|. +++....+........
T Consensus 27 ~d~~g~-l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~ 101 (330)
T 3hxj_A 27 LAKNGT-IYLGSSNKNLYAINTDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVS 101 (330)
T ss_dssp ECTTSC-EECSSTTTTTEEECTTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----C
T ss_pred EccCCe-EEEEcCCCEEEEECCCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCccc
Confidence 334554 5556678888888866666555444444556677766664 5555555 888886 5543332222211111
Q ss_pred EEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccc
Q 008467 363 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK 442 (564)
Q Consensus 363 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~ 442 (564)
..... +..+..++.++.++.++.. ++....+..+...+.++...+++.+ ..++.++.+..||.. ++.+..+.....
T Consensus 102 ~~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l-~vgt~~~~l~~~d~~-g~~~~~~~~~~~ 177 (330)
T 3hxj_A 102 DFTIF-EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTI-YVGSNDNYLYAINPD-GTEKWRFKTNDA 177 (330)
T ss_dssp CEEEE-TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCE-EEECTTSEEEEECTT-SCEEEEEECSSC
T ss_pred CceEE-CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEE-EEEcCCCEEEEECCC-CCEeEEEecCCC
Confidence 11111 4455666778889988887 6655555555555677777877775 457788999999988 666555444344
Q ss_pred cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 008467 443 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 522 (564)
Q Consensus 443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~ 522 (564)
.+.++...+++. |..++ +.|..+| .+++.+.........+.++...++|...+ ++.++.|..++.
T Consensus 178 ~~~~~~~d~~g~----------l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~~- 242 (330)
T 3hxj_A 178 ITSAASIGKDGT----------IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYV-TSLDGHLYAINP- 242 (330)
T ss_dssp CCSCCEECTTCC----------EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEE-EETTTEEEEECT-
T ss_pred ceeeeEEcCCCE----------EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEE-EcCCCeEEEECC-
Confidence 444444444332 33344 7899999 77888877776666788889998886554 566778888874
Q ss_pred CCeEEEEEecCCC-EEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 523 EGKIVKTYTGNGG-IFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 523 ~~~~~~~~~~~~~-i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
+++.+..+..... +..+..+++|+ |.++..++.+..+|
T Consensus 243 ~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 243 DGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAIN 281 (330)
T ss_dssp TSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEEC
T ss_pred CCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEEC
Confidence 5666666654333 33455666664 45565676777765
No 238
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.94 E-value=3.1e-05 Score=85.16 Aligned_cols=314 Identities=11% Similarity=0.076 Sum_probs=195.2
Q ss_pred ccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeec-cccccCCCCeEEEEECCCCCEEEEEe
Q 008467 216 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK-GRTNEKSKDVTTLDWNGEGTLLATGS 294 (564)
Q Consensus 216 ~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~l~~s~~g~~l~sg~ 294 (564)
...|.++...+++.+++....+| +.+|+..++... ...... .........|.++...++|.+.+ |+
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt 280 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAG-LFLINPKTKEIK-----------NYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GT 280 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTEEE-----------EECCCTTCTTSCSCSBEEEEEECTTSCEEE-EE
T ss_pred CCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCeEE-----------EeecCCCCccccCCCeEEEEEEcCCCCEEE-Ee
Confidence 45688888877777665433344 777886543210 000000 00111245699999999988665 44
Q ss_pred CCCeEEEEECCCceeEeecC--------CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee------cccC
Q 008467 295 YDGQARIWSTNGDLKCTLSK--------HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF------HSGP 360 (564)
Q Consensus 295 ~dg~i~vw~~~~~~~~~~~~--------h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~------~~~~ 360 (564)
.+ -+.+|+........+.. ....|.++...++|. |..|+.++-|..|+..+..+...... ....
T Consensus 281 ~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~ 358 (795)
T 4a2l_A 281 FN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNV 358 (795)
T ss_dssp SS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSS
T ss_pred CC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCe
Confidence 45 57888876544333321 235799999998886 55567777899998876654332111 1233
Q ss_pred eEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEec-C--------CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008467 361 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-G--------HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 431 (564)
Q Consensus 361 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~--------h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~ 431 (564)
+.++....+..+-.++.++.+..++...+... .+. . ....|.++..++++.+|..|+.++-+.+||..++
T Consensus 359 V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~ 437 (795)
T 4a2l_A 359 VSCIVEDKDKNLWIGTNDGGLNLYNPITQRFT-SYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG 437 (795)
T ss_dssp EEEEEECTTSCEEEEESSSCEEEECTTTCCEE-EECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred eEEEEECCCCCEEEEECCCCeEEEcCCCCcEE-EEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence 56665555555656666767777876654322 221 1 2356889999889985566788777999998876
Q ss_pred eeeeecc----cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC------CCCCEEEEEEc
Q 008467 432 KYVHDLR----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG------HREPVYSLAFS 501 (564)
Q Consensus 432 ~~~~~~~----~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------h~~~i~~~~~s 501 (564)
+...-.. .+...|.++...+.+. +++ |+. +-+.+||..+++....... ....|.++...
T Consensus 438 ~~~~~~~~~~~l~~~~v~~i~~d~~g~--------lwi--gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d 506 (795)
T 4a2l_A 438 QVENFNQRNSQLVNENVYAILPDGEGN--------LWL--GTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRD 506 (795)
T ss_dssp CEEEECTTTSCCSCSCEEEEEECSSSC--------EEE--EES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEEC
T ss_pred cEEEeecCCCCcCCCeeEEEEECCCCC--------EEE--Eec-CceeEEeCCCCeEEEccccccccccCCceEEEEEEC
Confidence 5433211 1345688888766553 233 444 4588899887765432211 23579999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEEe--------cCCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 502 PTGEYLASGSLDKSMHIWSLKEGKIVKTYT--------GNGGIFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 502 pdg~~lasgs~dg~i~iw~~~~~~~~~~~~--------~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
++|++.+... .| |..|+..+++. .+. ....|.++..+++|+..++.. + .+..||.
T Consensus 507 ~~g~lWigt~-~G-l~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~ 569 (795)
T 4a2l_A 507 SHKRLWIGGE-EG-LSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNE 569 (795)
T ss_dssp TTCCEEEEES-SC-EEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEET
T ss_pred CCCCEEEEeC-Cc-eEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECC
Confidence 9998776554 44 88999887766 332 123588999999998666553 3 4666663
No 239
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.93 E-value=3.6e-05 Score=84.62 Aligned_cols=309 Identities=11% Similarity=0.091 Sum_probs=193.9
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeec-cccccCCCCeEEEEECCCCCEEEEEeC
Q 008467 217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK-GRTNEKSKDVTTLDWNGEGTLLATGSY 295 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~l~~s~~g~~l~sg~~ 295 (564)
..|.++...++|.+.+. +.+ -+.+|+..++... ...... .........|.++...++|.+. .|+.
T Consensus 263 ~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~ 328 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWIG-TFN-DLNIYHEGTDSFA-----------SYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTY 328 (795)
T ss_dssp SBEEEEEECTTSCEEEE-ESS-CEEEEETTTTEEE-----------EECCCTTSTTSCSSSCEEEEEECTTSCEE-EEES
T ss_pred CeEEEEEEcCCCCEEEE-eCC-hhheEcCCCCeEE-----------EEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEEC
Confidence 56899999988886654 344 4778886543210 011000 0111234579999999998855 5677
Q ss_pred CCeEEEEECCCceeEeecC-------CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEe--------ecccC
Q 008467 296 DGQARIWSTNGDLKCTLSK-------HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE--------FHSGP 360 (564)
Q Consensus 296 dg~i~vw~~~~~~~~~~~~-------h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--------~~~~~ 360 (564)
++-|.+|+........+.. ....|.++...++|+ |..|+.++-+..||..++.+..... .....
T Consensus 329 ~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 407 (795)
T 4a2l_A 329 FGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNN 407 (795)
T ss_dssp SSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSC
T ss_pred CCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCcc
Confidence 7778888765432222211 235699999888876 4557777789999988776544321 11234
Q ss_pred eEEEEcCCCce-EEEEeCCCeEEEEEcCCCceeeEec-----CCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee
Q 008467 361 TLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFA-----GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 434 (564)
Q Consensus 361 ~~~~~~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~-----~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~ 434 (564)
+.++....+.. +..++.++.++.++..+++. ..+. .....|.++...++|.+.+.. . +-+.+||..+++..
T Consensus 408 v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~-~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~ 484 (795)
T 4a2l_A 408 IKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV-ENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFT 484 (795)
T ss_dssp EEEEEEETTTTEEEEEETTTEEEEEETTTCCE-EEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEE
T ss_pred EEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE-EEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEE
Confidence 56665544444 55566667788888776543 2232 134578999999988876544 4 45888998876543
Q ss_pred eecc------cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe-------CCCCCEEEEEEc
Q 008467 435 HDLR------EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-------GHREPVYSLAFS 501 (564)
Q Consensus 435 ~~~~------~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~h~~~i~~~~~s 501 (564)
.... .....|.++...+++. +++ |+. +-|..||..+++. .+. .....|.++...
T Consensus 485 ~~~~~~~~~~~~~~~i~~i~~d~~g~--------lWi--gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d 551 (795)
T 4a2l_A 485 TIEKEKDGTPVVSKQITTLFRDSHKR--------LWI--GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEA 551 (795)
T ss_dssp ECCBCTTCCBCCCCCEEEEEECTTCC--------EEE--EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEEC
T ss_pred EccccccccccCCceEEEEEECCCCC--------EEE--EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEEC
Confidence 3211 1235688888776664 233 444 4588889877665 332 123469999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-----CCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 502 PTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-----NGGIFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 502 pdg~~lasgs~dg~i~iw~~~~~~~~~~~~~-----~~~i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
++|.+.++.. .| |..|+..+++.. .+.. ...|.++..+++|+..+++ .+ .+..||
T Consensus 552 ~~g~lWigT~-~G-l~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~-Gl~~~~ 611 (795)
T 4a2l_A 552 SNGIIWVGTR-EG-FYCFNEKDKQIK-RYNTTNGLPNNVVYGILEDSFGRLWLST-NR-GISCFN 611 (795)
T ss_dssp TTSCEEEEES-SC-EEEEETTTTEEE-EECGGGTCSCSCEEEEEECTTSCEEEEE-TT-EEEEEE
T ss_pred CCCCEEEEeC-CC-ceeECCCCCcEE-EeCCCCCCchhheEEEEECCCCCEEEEc-CC-ceEEEc
Confidence 9998666444 34 888998877644 3432 2358899999999876665 33 455555
No 240
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.90 E-value=2.1e-07 Score=99.84 Aligned_cols=269 Identities=12% Similarity=0.069 Sum_probs=169.6
Q ss_pred CCEEEEEeCCCeEEEEEC-CCceeEeecCCCC----------CE-EEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467 287 GTLLATGSYDGQARIWST-NGDLKCTLSKHKG----------PI-FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 354 (564)
Q Consensus 287 g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~----------~V-~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 354 (564)
+..++.++.++.|..+|. .|+.+-.+..... .+ .++.. .+..++.++.|+.|..+|..+++.+-.+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 345666677788888885 4555544432111 00 01111 2467888899999999999999987666
Q ss_pred eecccC----eE-EEEcCCCceEEEEeC-----CCeEEEEEcCCCceeeEecCC--------------------------
Q 008467 355 EFHSGP----TL-DVDWRNNVSFATSST-----DNMIYVCKIGENRPIKTFAGH-------------------------- 398 (564)
Q Consensus 355 ~~~~~~----~~-~~~~~~~~~~~~~~~-----d~~i~~~~~~~~~~~~~~~~h-------------------------- 398 (564)
...... +. .....++..++..+. ++.|+.+|..+++.+-.+...
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 542110 00 000113333443322 588999999888876655321
Q ss_pred -----CcceEEEEECCCCCEEEEEeCCCc-------------------EEEEeCCCCeeeeeccc--cc-------ccEE
Q 008467 399 -----QGEVNCVKWDPTGSLLASCSDDVT-------------------AKIWNMKQDKYVHDLRE--HS-------KEIY 445 (564)
Q Consensus 399 -----~~~i~~v~~~~~~~~las~s~dg~-------------------i~iwd~~~~~~~~~~~~--~~-------~~i~ 445 (564)
......++++|+..+++.++.++. |..+|.++++.+-.++. |. .+..
T Consensus 224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~ 303 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (668)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcE
Confidence 001124688888888888887763 89999999988766543 22 1222
Q ss_pred EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC------------CCE------------------
Q 008467 446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR------------EPV------------------ 495 (564)
Q Consensus 446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~------------~~i------------------ 495 (564)
......++. ...+++.++.+|.++++|..+|+.+....... .++
T Consensus 304 ~~d~~~~G~------~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~ 377 (668)
T 1kv9_A 304 LAELNIDGK------PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSP 377 (668)
T ss_dssp EEEEEETTE------EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCT
T ss_pred EEEeccCCc------EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCC
Confidence 111112221 11257889999999999999999885543211 011
Q ss_pred ------EEEEEcCCCCEEEEE------------------------------------eCCCcEEEEeCCCCeEEEEEecC
Q 008467 496 ------YSLAFSPTGEYLASG------------------------------------SLDKSMHIWSLKEGKIVKTYTGN 533 (564)
Q Consensus 496 ------~~~~~spdg~~lasg------------------------------------s~dg~i~iw~~~~~~~~~~~~~~ 533 (564)
..++|+|+...+... ..+|.|..||+.+|+.+..+...
T Consensus 378 ~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~ 457 (668)
T 1kv9_A 378 FGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP 457 (668)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES
T ss_pred ccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC
Confidence 126788876665431 13488999999999998887765
Q ss_pred CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 534 GGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 534 ~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
.......+...|..|+++..++.+++||.+
T Consensus 458 ~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~ 487 (668)
T 1kv9_A 458 THWNGGTLSTAGNLVFQGTAAGQMHAYSAD 487 (668)
T ss_dssp SSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred CCCcCceeEeCCCEEEEECCcccchhhhhh
Confidence 555555666788999999999999999864
No 241
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.86 E-value=6.3e-07 Score=96.11 Aligned_cols=314 Identities=13% Similarity=0.159 Sum_probs=175.7
Q ss_pred CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccC-CCCe-EEEEECCCCCEEEEEeCCCeEEEEEC-
Q 008467 228 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK-SKDV-TTLDWNGEGTLLATGSYDGQARIWST- 304 (564)
Q Consensus 228 ~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~V-~~l~~s~~g~~l~sg~~dg~i~vw~~- 304 (564)
+..|+.++.++.+.-+|..+|+........ ......... ...+ ..++. .+..++.++.||.+..+|.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~--------~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~ 135 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPE--------VAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAK 135 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCC--------CCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETT
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCC--------CCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECC
Confidence 556667777888888888777532111000 000000000 0000 00111 2457788889999999996
Q ss_pred CCceeEeecCCCC-CEEEEEeCC--CCCEEEEeeC------CCcEEEEECCCcceeEEEeeccc-C--------------
Q 008467 305 NGDLKCTLSKHKG-PIFSLKWNK--KGDYLLTGSC------DKTAIVWDVKTEEWKQQFEFHSG-P-------------- 360 (564)
Q Consensus 305 ~~~~~~~~~~h~~-~V~~l~~~~--~~~~l~s~s~------D~~v~iwd~~~~~~~~~~~~~~~-~-------------- 360 (564)
.|+.+..+..... ....+...| .+..++.++. ++.|..+|+.+++.+-.+..... +
T Consensus 136 tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~ 215 (668)
T 1kv9_A 136 TGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAK 215 (668)
T ss_dssp TCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred CCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccc
Confidence 4666554433110 000000111 1345555543 58999999999998776653210 0
Q ss_pred ------------------eEEEEcCCCceEEEEeCCC-------------------eEEEEEcCCCceeeEecC--CC--
Q 008467 361 ------------------TLDVDWRNNVSFATSSTDN-------------------MIYVCKIGENRPIKTFAG--HQ-- 399 (564)
Q Consensus 361 ------------------~~~~~~~~~~~~~~~~~d~-------------------~i~~~~~~~~~~~~~~~~--h~-- 399 (564)
...++...+ .+..+..++ .|+.+|..+++.+-.+.. |.
T Consensus 216 ~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~w 294 (668)
T 1kv9_A 216 TWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSW 294 (668)
T ss_dssp TCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS
T ss_pred cCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccc
Confidence 011222223 333333333 488888888887666543 22
Q ss_pred -----cceEEEEECCCCC---EEEEEeCCCcEEEEeCCCCeeeeeccccc------------ccEE---------EEEEc
Q 008467 400 -----GEVNCVKWDPTGS---LLASCSDDVTAKIWNMKQDKYVHDLREHS------------KEIY---------TIRWS 450 (564)
Q Consensus 400 -----~~i~~v~~~~~~~---~las~s~dg~i~iwd~~~~~~~~~~~~~~------------~~i~---------~i~~~ 450 (564)
.+.....+..+|+ .++.++.+|.+.++|..+++.+..+.... .++. .....
T Consensus 295 d~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~ 374 (668)
T 1kv9_A 295 DFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMW 374 (668)
T ss_dssp CCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEES
T ss_pred cccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEEC
Confidence 2222233334665 68899999999999999998774332111 0000 00000
Q ss_pred cCCC-------CCCCCCCcEEEE-----------------------------------EEeCCCeEEEEeCCCCeEEEEE
Q 008467 451 PTGS-------GTNNPNQQLILA-----------------------------------SASFDSTVKLWDVELGKLLYSL 488 (564)
Q Consensus 451 p~~~-------~~~~~~~~~~l~-----------------------------------s~s~dg~i~iwd~~~~~~~~~~ 488 (564)
|... ...+|....+.+ ....+|.|..||+.+|+.+++.
T Consensus 375 p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~ 454 (668)
T 1kv9_A 375 PSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKV 454 (668)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEE
T ss_pred CCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEc
Confidence 1000 001112122221 1124588999999999999887
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEE--EEEEccCCC-EEEEEEc
Q 008467 489 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF--EVCWNKEGD-KIAACFA 553 (564)
Q Consensus 489 ~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~--~~~w~~~g~-~la~~~~ 553 (564)
..+ .++....+...|.+++.|+.||.|+.||.++|+++..+....++. -+.+..+|+ ++++|..
T Consensus 455 ~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~G 521 (668)
T 1kv9_A 455 PYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAG 521 (668)
T ss_dssp EES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred cCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEec
Confidence 643 334444555678889999999999999999999999887655442 456667887 6666654
No 242
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.86 E-value=5.5e-07 Score=83.70 Aligned_cols=193 Identities=10% Similarity=0.063 Sum_probs=136.5
Q ss_pred EEEEEeCCCCCEEEEeeC--CCcEEEEECCCcceeEEEeecccC-eEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEe
Q 008467 319 IFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF 395 (564)
Q Consensus 319 V~~l~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~ 395 (564)
..++.|++++..+++.+. +++|.+.|+.+++....+.....+ ...+.+.++..+++.-.++.+.++|..+.+.+..+
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i 102 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNF 102 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEE
Confidence 578999998644444433 579999999999998887653332 23455556777888888999999999988888877
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccccc-----ccEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008467 396 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS-----KEIYTIRWSPTGSGTNNPNQQLILASASF 470 (564)
Q Consensus 396 ~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~i~~~p~~~~~~~~~~~~~l~s~s~ 470 (564)
.--...-.. +++||+.++.+..+++|.++|..+.+.+..+..-. .....+.|. ++. +.+....
T Consensus 103 ~~g~~~g~g--lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~---------lyvn~~~ 170 (266)
T 2iwa_A 103 THQMKDGWG--LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE---------VWANIWQ 170 (266)
T ss_dssp ECCSSSCCE--EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE---------EEEEETT
T ss_pred ECCCCCeEE--EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE---------EEEecCC
Confidence 522122223 44577766666678899999999888776654221 124566776 432 4555556
Q ss_pred CCeEEEEeCCCCeEEEEEeCC-------------CCCEEEEEEcCCCCE-EEEEeCCCcEEEEeCCC
Q 008467 471 DSTVKLWDVELGKLLYSLNGH-------------REPVYSLAFSPTGEY-LASGSLDKSMHIWSLKE 523 (564)
Q Consensus 471 dg~i~iwd~~~~~~~~~~~~h-------------~~~i~~~~~spdg~~-lasgs~dg~i~iw~~~~ 523 (564)
++.|.+.|..+++.+..+.-. ....+.|+|+|+++. ++++...+.|.+.++..
T Consensus 171 ~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 171 TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 889999999999998887531 124589999999865 56666778888887754
No 243
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.84 E-value=1.3e-06 Score=86.59 Aligned_cols=184 Identities=15% Similarity=0.192 Sum_probs=127.1
Q ss_pred CceEEEEeCCCeEEEEEcCCC----ceeeEec-------CCCcceEEEEECCCCCEEEEEeCC------CcEEEEeCCCC
Q 008467 369 NVSFATSSTDNMIYVCKIGEN----RPIKTFA-------GHQGEVNCVKWDPTGSLLASCSDD------VTAKIWNMKQD 431 (564)
Q Consensus 369 ~~~~~~~~~d~~i~~~~~~~~----~~~~~~~-------~h~~~i~~v~~~~~~~~las~s~d------g~i~iwd~~~~ 431 (564)
...++.+..++.|+++|+.+. +.++++. .....-..+.+.|+| +++++..+ |.|.+.|..+.
T Consensus 96 ~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~ 174 (462)
T 2ece_A 96 RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSF 174 (462)
T ss_dssp CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTC
T ss_pred CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCC
Confidence 345677778899999999754 4445542 011134457788999 77776666 78999999999
Q ss_pred eeeeeccccc---ccEEEEEEccCCCCCCCCCCcEEEEEEe-------------------CCCeEEEEeCCCCeEEEEEe
Q 008467 432 KYVHDLREHS---KEIYTIRWSPTGSGTNNPNQQLILASAS-------------------FDSTVKLWDVELGKLLYSLN 489 (564)
Q Consensus 432 ~~~~~~~~~~---~~i~~i~~~p~~~~~~~~~~~~~l~s~s-------------------~dg~i~iwd~~~~~~~~~~~ 489 (564)
+.+..+.... .--+.+.|+|++. ++++.. ...+|.+||+.+++.+.++.
T Consensus 175 ~v~~~~~~~~~~~~~~Yd~~~~p~~~---------~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~ 245 (462)
T 2ece_A 175 EPLGKWEIDRGDQYLAYDFWWNLPNE---------VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT 245 (462)
T ss_dssp CEEEECCSBCTTCCCCCCEEEETTTT---------EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred eEEEEEccCCCCccccceEEECCCCC---------EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence 9888775321 2245688888764 455553 37899999999998888876
Q ss_pred CC--CCCEEEEEE--cCCCCEEEEEe------CCCcEEEEeCCCCeE--EEEE--ec-----------------CCCEEE
Q 008467 490 GH--REPVYSLAF--SPTGEYLASGS------LDKSMHIWSLKEGKI--VKTY--TG-----------------NGGIFE 538 (564)
Q Consensus 490 ~h--~~~i~~~~~--spdg~~lasgs------~dg~i~iw~~~~~~~--~~~~--~~-----------------~~~i~~ 538 (564)
-- ......|.| +|+|+++.+++ .+++|.+|....|+. .+.+ .. ...+.+
T Consensus 246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence 42 123455656 99999887766 567888877765542 1221 11 134678
Q ss_pred EEEccCCCEEEEEEc-CCcEEEEEe
Q 008467 539 VCWNKEGDKIAACFA-NHTVCVLDF 562 (564)
Q Consensus 539 ~~w~~~g~~la~~~~-~~~v~v~~~ 562 (564)
+.+|+||++|-++.. .+.|.|||+
T Consensus 326 I~lS~DGrfLYVSnrg~d~VavfdV 350 (462)
T 2ece_A 326 IDISLDDKFLYLSLWGIGEVRQYDI 350 (462)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEe
Confidence 999999998876644 678999997
No 244
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.80 E-value=7.8e-06 Score=85.80 Aligned_cols=260 Identities=14% Similarity=0.160 Sum_probs=151.3
Q ss_pred CCEEEEEeCCCeEEEEEC-CCceeEeec--CCCC--CEEEEEeCC--CCCEEEEeeC------CCcEEEEECCCcceeEE
Q 008467 287 GTLLATGSYDGQARIWST-NGDLKCTLS--KHKG--PIFSLKWNK--KGDYLLTGSC------DKTAIVWDVKTEEWKQQ 353 (564)
Q Consensus 287 g~~l~sg~~dg~i~vw~~-~~~~~~~~~--~h~~--~V~~l~~~~--~~~~l~s~s~------D~~v~iwd~~~~~~~~~ 353 (564)
+..++.++.|+.+..+|. .|+.+.... .+.. .+. -+| .+..++.++. ++.|..+|..+++.+-.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~---~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLT---QAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCC---SCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceec---cCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 557778888999999996 466554432 1110 111 111 1345565554 79999999999988766
Q ss_pred EeecccC----------------------------------------eEEEEcCCCceEEEEeC-----------C----
Q 008467 354 FEFHSGP----------------------------------------TLDVDWRNNVSFATSST-----------D---- 378 (564)
Q Consensus 354 ~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~-----------d---- 378 (564)
+...... ...++...+..++..+. +
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence 5532110 01222222333443321 2
Q ss_pred CeEEEEEcCCCceeeEecC--CC--------cceEEEEECCCCC---EEEEEeCCCcEEEEeCCCCeeeeeccccc----
Q 008467 379 NMIYVCKIGENRPIKTFAG--HQ--------GEVNCVKWDPTGS---LLASCSDDVTAKIWNMKQDKYVHDLREHS---- 441 (564)
Q Consensus 379 ~~i~~~~~~~~~~~~~~~~--h~--------~~i~~v~~~~~~~---~las~s~dg~i~iwd~~~~~~~~~~~~~~---- 441 (564)
+.|+.++..+++.+-.+.. |. .++ -+...++|+ +++.++.+|.+.++|..+++.+..+....
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w 350 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV 350 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccc
Confidence 3588888888877655542 21 122 122234674 67788999999999999998775543211
Q ss_pred ---------ccEE-----------EEEEccCCC-------CCCCCCCcEEEEEE--------------------------
Q 008467 442 ---------KEIY-----------TIRWSPTGS-------GTNNPNQQLILASA-------------------------- 468 (564)
Q Consensus 442 ---------~~i~-----------~i~~~p~~~-------~~~~~~~~~~l~s~-------------------------- 468 (564)
.++. .....|... ...+|...++++..
T Consensus 351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence 1111 001111100 01112222222221
Q ss_pred ----------eCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEE-
Q 008467 469 ----------SFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF- 537 (564)
Q Consensus 469 ----------s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~- 537 (564)
..+|.|..||+.+++.+.++... .++....+...+..++.++.||.|+.||.++|+++..+.....+.
T Consensus 431 ~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~ 509 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIG 509 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred eccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEe
Confidence 14589999999999998887532 233333333356677779999999999999999999987654432
Q ss_pred -EEEEccCCCEEEEE
Q 008467 538 -EVCWNKEGDKIAAC 551 (564)
Q Consensus 538 -~~~w~~~g~~la~~ 551 (564)
.+.+..+|+.++++
T Consensus 510 ~p~~~~~~G~~yv~~ 524 (571)
T 2ad6_A 510 SPMTYSFKGKQYIGS 524 (571)
T ss_dssp CCEEEEETTEEEEEE
T ss_pred eeEEEEECCEEEEEE
Confidence 34567888755544
No 245
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.80 E-value=1.8e-06 Score=90.66 Aligned_cols=229 Identities=12% Similarity=0.081 Sum_probs=145.1
Q ss_pred CCEEEEeeCCCcEEEEECCCcceeEEEeeccc----CeE-EEEcCCCceEEEEeC-----CCeEEEEEcCCCceeeEecC
Q 008467 328 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG----PTL-DVDWRNNVSFATSST-----DNMIYVCKIGENRPIKTFAG 397 (564)
Q Consensus 328 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~-----d~~i~~~~~~~~~~~~~~~~ 397 (564)
+..++.++.|+.+..+|..+++.+-.+..... .+. .....++..++.+.. ++.|+.+|..+++.+-.+..
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 56788888999999999999987765543220 000 000123444444443 78999999988877655432
Q ss_pred CCcc--------------------------------------eEEEEECCCCCEEEEEeCC----------------CcE
Q 008467 398 HQGE--------------------------------------VNCVKWDPTGSLLASCSDD----------------VTA 423 (564)
Q Consensus 398 h~~~--------------------------------------i~~v~~~~~~~~las~s~d----------------g~i 423 (564)
.... ...++++++..++..++.+ +.|
T Consensus 195 ~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v 274 (571)
T 2ad6_A 195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI 274 (571)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred CCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEE
Confidence 1100 0135666766666665532 358
Q ss_pred EEEeCCCCeeeeeccc--cc--------ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC-
Q 008467 424 KIWNMKQDKYVHDLRE--HS--------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR- 492 (564)
Q Consensus 424 ~iwd~~~~~~~~~~~~--~~--------~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~- 492 (564)
..+|.++++.+-.++. |. .++. +...++|. ...+++.++.+|.+.++|..+|+.+....-..
T Consensus 275 ~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~------~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~ 347 (571)
T 2ad6_A 275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGK------MTPLLSHIDRNGILYTLNRENGNLIVAEKVDPA 347 (571)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTE------EEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred EEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCc------EEEEEEEeCCCcEEEEEECCCCCEEeeecccCC
Confidence 8999999887765542 11 1111 11111221 00256778899999999999999987764221
Q ss_pred ------------CCE--------------------------EEEEEcCCCCEEEEEe-----------------------
Q 008467 493 ------------EPV--------------------------YSLAFSPTGEYLASGS----------------------- 511 (564)
Q Consensus 493 ------------~~i--------------------------~~~~~spdg~~lasgs----------------------- 511 (564)
.|+ ..++|+|+...|...+
T Consensus 348 ~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~ 427 (571)
T 2ad6_A 348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGA 427 (571)
T ss_dssp CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred ccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccc
Confidence 122 2467888877766543
Q ss_pred --------------CCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 512 --------------LDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 512 --------------~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
.+|.|..||+.+|+.+..+.....+........+..+.++..++.+.+||.+
T Consensus 428 ~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~ 493 (571)
T 2ad6_A 428 TLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNK 493 (571)
T ss_dssp EEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred cceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECC
Confidence 3578999999999998888765444433344567788888889999999864
No 246
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.80 E-value=2.9e-06 Score=82.42 Aligned_cols=236 Identities=13% Similarity=0.070 Sum_probs=141.8
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecC--------------------CCCCEEEEEeCCCCCEEEEeeCC
Q 008467 278 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSK--------------------HKGPIFSLKWNKKGDYLLTGSCD 337 (564)
Q Consensus 278 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~--------------------h~~~V~~l~~~~~~~~l~s~s~D 337 (564)
..+++|.++|+++.++..++.|..|+..+.....+.. ....+.++++.+++..|+.+...
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~ 100 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY 100 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence 4567899999978888889999999877643332221 01347889999733456556555
Q ss_pred CcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEE
Q 008467 338 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLAS 416 (564)
Q Consensus 338 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las 416 (564)
+.+..+|..++.... +.... .+. .....+.+++.+ +|++.++
T Consensus 101 ~~i~~~d~~~g~~~~-~~~~~-----------------------------~~~-------~~~~p~~i~~d~~~G~l~v~ 143 (322)
T 2fp8_A 101 YHLSVVGSEGGHATQ-LATSV-----------------------------DGV-------PFKWLYAVTVDQRTGIVYFT 143 (322)
T ss_dssp TEEEEECTTCEECEE-EESEE-----------------------------TTE-------ECSCEEEEEECTTTCCEEEE
T ss_pred CCEEEEeCCCCEEEE-ecccC-----------------------------CCC-------cccccceEEEecCCCEEEEE
Confidence 668888876543211 10000 000 011245567777 7766555
Q ss_pred EeC-----------------CCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 008467 417 CSD-----------------DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 479 (564)
Q Consensus 417 ~s~-----------------dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 479 (564)
-.. ++.|..||..++........ ......++|+|++. .++++-+..+.|.+|++
T Consensus 144 d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~--------~lyv~d~~~~~I~~~~~ 214 (322)
T 2fp8_A 144 DVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSS--------FVLVAEFLSHQIVKYWL 214 (322)
T ss_dssp ESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSS--------EEEEEEGGGTEEEEEES
T ss_pred CCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCC--------EEEEEeCCCCeEEEEEC
Confidence 432 36677788766543221111 12234678888764 24445566789999998
Q ss_pred CC---CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEEecC-----CCEEEEEE
Q 008467 480 EL---GKLLYSLNGHREPVYSLAFSPTGEYLASGSL----------DKSMHIWSLKEGKIVKTYTGN-----GGIFEVCW 541 (564)
Q Consensus 480 ~~---~~~~~~~~~h~~~i~~~~~spdg~~lasgs~----------dg~i~iw~~~~~~~~~~~~~~-----~~i~~~~w 541 (564)
.. +... .+..... ...++++++|++.++... .+.|..++. +|+.+..+... ..+..+++
T Consensus 215 ~~~~~~~~~-~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~ 291 (322)
T 2fp8_A 215 EGPKKGTAE-VLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE 291 (322)
T ss_dssp SSTTTTCEE-EEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE
T ss_pred CCCcCCccc-eEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE
Confidence 74 2211 1111122 688999999997776644 467888987 47877777543 23566666
Q ss_pred ccCCCEEEEEEcCCcEEEEEee
Q 008467 542 NKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 542 ~~~g~~la~~~~~~~v~v~~~~ 563 (564)
.+|+..++...++.|.++++.
T Consensus 292 -~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 292 -HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp -ETTEEEEECSSCSEEEEEEC-
T ss_pred -eCCEEEEeecCCCceEEEecc
Confidence 456665566677889888764
No 247
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.78 E-value=4.2e-06 Score=77.75 Aligned_cols=189 Identities=11% Similarity=0.081 Sum_probs=128.3
Q ss_pred EEEEcCC-CceEEEEeC--CCeEEEEEcCCCceeeEecCCC-cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeec
Q 008467 362 LDVDWRN-NVSFATSST--DNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 437 (564)
Q Consensus 362 ~~~~~~~-~~~~~~~~~--d~~i~~~~~~~~~~~~~~~~h~-~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~ 437 (564)
..+.+.+ ...+++++. ++.|.+.|..+++.+..+.-.. .....++++. +.+.++.-.++.+.++|..+.+.+.++
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~i 102 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKNF 102 (266)
T ss_dssp EEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred ccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEEEE
Confidence 4566655 444455443 6799999999998877764211 1223455542 344455556899999999999888777
Q ss_pred ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC-----CCEEEEEEcCCCCEEEEEeC
Q 008467 438 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-----EPVYSLAFSPTGEYLASGSL 512 (564)
Q Consensus 438 ~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-----~~i~~~~~spdg~~lasgs~ 512 (564)
......-..+ ++++. .+++ +..++.|.++|..+.+.+..+.-.. ..++.+.|. +|...+....
T Consensus 103 ~~g~~~g~gl--t~Dg~--------~l~v-s~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~ 170 (266)
T 2iwa_A 103 THQMKDGWGL--ATDGK--------ILYG-SDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ 170 (266)
T ss_dssp ECCSSSCCEE--EECSS--------SEEE-ECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred ECCCCCeEEE--EECCC--------EEEE-ECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCC
Confidence 5321111233 34443 2344 4468899999999988877765221 136788888 7866666666
Q ss_pred CCcEEEEeCCCCeEEEEEecC--------------CCEEEEEEccCCCEEEEE-EcCCcEEEEEee
Q 008467 513 DKSMHIWSLKEGKIVKTYTGN--------------GGIFEVCWNKEGDKIAAC-FANHTVCVLDFR 563 (564)
Q Consensus 513 dg~i~iw~~~~~~~~~~~~~~--------------~~i~~~~w~~~g~~la~~-~~~~~v~v~~~~ 563 (564)
++.|.+.|..+++++..+... ...+.++|+|++++|.++ -....+.+++++
T Consensus 171 ~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 171 TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 889999999999999988642 246899999999866554 456788888874
No 248
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.77 E-value=2.9e-06 Score=89.13 Aligned_cols=265 Identities=11% Similarity=0.053 Sum_probs=158.3
Q ss_pred CEEEEEeC-CCeEEEEEC--CCceeEeecCCCC-----------CEEEEEeCCCCCE----EEEeeCCCcEEEEECCCcc
Q 008467 288 TLLATGSY-DGQARIWST--NGDLKCTLSKHKG-----------PIFSLKWNKKGDY----LLTGSCDKTAIVWDVKTEE 349 (564)
Q Consensus 288 ~~l~sg~~-dg~i~vw~~--~~~~~~~~~~h~~-----------~V~~l~~~~~~~~----l~s~s~D~~v~iwd~~~~~ 349 (564)
..+..++. ++.|..+|. .|+.+-.+..... ...++...|.+.. ++.++.|+.+..+|..+++
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~ 142 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE 142 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC
Confidence 34444555 677777776 4555443322110 0112334333334 8888999999999999998
Q ss_pred eeEEEeecc---------cCeEEEEcCCCceEEEEe-----CCCeEEEEEcCCCceeeEecCCCcc--------------
Q 008467 350 WKQQFEFHS---------GPTLDVDWRNNVSFATSS-----TDNMIYVCKIGENRPIKTFAGHQGE-------------- 401 (564)
Q Consensus 350 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~~~~h~~~-------------- 401 (564)
.+-...... .+++ .++..++.++ .++.|+.+|..+++.+-.+......
T Consensus 143 ~~W~~~~~~~~~~~~~~ssP~v----~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~ 218 (599)
T 1w6s_A 143 TVWKVENSDIKVGSTLTIAPYV----VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (599)
T ss_dssp EEEEEECCCGGGTCBCCSCCEE----ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred EEEeecCCCCCccceeecCCEE----ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence 776554322 1111 1333343333 3789999999888766544321110
Q ss_pred -----------------------e-EEEEECCCCCEEEEEeCC----------------CcEEEEeCCCCeeeeeccccc
Q 008467 402 -----------------------V-NCVKWDPTGSLLASCSDD----------------VTAKIWNMKQDKYVHDLREHS 441 (564)
Q Consensus 402 -----------------------i-~~v~~~~~~~~las~s~d----------------g~i~iwd~~~~~~~~~~~~~~ 441 (564)
+ ..+++.+...+|+.++.+ +.|..+|.++++.+-.++...
T Consensus 219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~ 298 (599)
T 1w6s_A 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP 298 (599)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence 0 134566777777777655 378899999998876554321
Q ss_pred ----------ccEEEEEEc-cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC-------------CCCE--
Q 008467 442 ----------KEIYTIRWS-PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-------------REPV-- 495 (564)
Q Consensus 442 ----------~~i~~i~~~-p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-------------~~~i-- 495 (564)
.++. +... .+|. ...+++.++.+|.+.++|.++|+.+....-. ..++
T Consensus 299 ~d~wd~d~~~~p~l-~d~~~~~G~------~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~ 371 (599)
T 1w6s_A 299 HDEWDYAGVNVMML-SEQKDKDGK------ARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRD 371 (599)
T ss_dssp TCSSCCCCCCCCEE-EEEECTTSC------EEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEEC
T ss_pred CccccccCCCccEE-EeccccCCc------EEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeec
Confidence 1121 1111 1221 0135777899999999999999998776421 1122
Q ss_pred ------------------------EEEEEcCCCCEEEEE---------------------------------e------C
Q 008467 496 ------------------------YSLAFSPTGEYLASG---------------------------------S------L 512 (564)
Q Consensus 496 ------------------------~~~~~spdg~~lasg---------------------------------s------~ 512 (564)
..++|+|+..++.+. + .
T Consensus 372 ~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~ 451 (599)
T 1w6s_A 372 PEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEG 451 (599)
T ss_dssp GGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBC
T ss_pred cccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCC
Confidence 246777776665442 1 3
Q ss_pred CCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 513 DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 513 dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
+|.|..||+.+|+++...........-.....|..+.++..|+.++.||.+
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~ 502 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSD 502 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred cCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECC
Confidence 578999999999998877543322211223467777778888888888854
No 249
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.76 E-value=2.4e-05 Score=73.48 Aligned_cols=223 Identities=11% Similarity=0.032 Sum_probs=132.3
Q ss_pred CEEEEeeCCCcEEEEECCCccee-----EEEeecccCeEEEEc--CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcc
Q 008467 329 DYLLTGSCDKTAIVWDVKTEEWK-----QQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE 401 (564)
Q Consensus 329 ~~l~s~s~D~~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~ 401 (564)
.+|+.+.. +.|+.+++...... ..+.........+.| ..+..+++....+.|++++.........+......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34555443 47888887654321 111111122334444 45567777778889999998765543333333346
Q ss_pred eEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeC--CCeEEEEe
Q 008467 402 VNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF--DSTVKLWD 478 (564)
Q Consensus 402 i~~v~~~~~~~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~--dg~i~iwd 478 (564)
...+++++++. ++++....+.|.++++........+.........+++.|.+. .+.++... .+.|..++
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g--------~lyv~~~~~~~~~I~~~~ 152 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRG--------NLYWTDWNRDNPKIETSH 152 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTT--------EEEEEECCSSSCEEEEEE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCC--------EEEEEECCCCCcEEEEEe
Confidence 78999999755 455556678999999875432221221223457888888542 23333332 46888888
Q ss_pred CCCCeEEEEE-eCCCCCEEEEEEcCCCCEEEE-EeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCc
Q 008467 479 VELGKLLYSL-NGHREPVYSLAFSPTGEYLAS-GSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHT 556 (564)
Q Consensus 479 ~~~~~~~~~~-~~h~~~i~~~~~spdg~~las-gs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~ 556 (564)
+.. .....+ .........++++|++.+|.. -...+.|.+++..................++.+ .+..+++...++.
T Consensus 153 ~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~ 230 (267)
T 1npe_A 153 MDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNS 230 (267)
T ss_dssp TTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTE
T ss_pred cCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCe
Confidence 763 322222 222345789999998776654 455689999999765544444443446677765 4445555556678
Q ss_pred EEEEEe
Q 008467 557 VCVLDF 562 (564)
Q Consensus 557 v~v~~~ 562 (564)
|.++|.
T Consensus 231 v~~~d~ 236 (267)
T 1npe_A 231 VIAMDL 236 (267)
T ss_dssp EEEEET
T ss_pred EEEEeC
Confidence 888875
No 250
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.75 E-value=2e-06 Score=78.97 Aligned_cols=180 Identities=13% Similarity=0.126 Sum_probs=127.2
Q ss_pred EEEEEeCCCCCEEEEeeCCC--cEEEEECCCcceeEEEeecccCe-EEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEe
Q 008467 319 IFSLKWNKKGDYLLTGSCDK--TAIVWDVKTEEWKQQFEFHSGPT-LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF 395 (564)
Q Consensus 319 V~~l~~~~~~~~l~s~s~D~--~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~ 395 (564)
..+|.|+ ++..+.+.+.+| +|+++|+.+++....+....... ..+...++..+++.-.++.++++|..+.+.+.++
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti 123 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSF 123 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEE
Confidence 4678888 565566666665 89999999999988876644332 2355557777888778999999999999888887
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc--c---ccEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008467 396 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH--S---KEIYTIRWSPTGSGTNNPNQQLILASASF 470 (564)
Q Consensus 396 ~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~--~---~~i~~i~~~p~~~~~~~~~~~~~l~s~s~ 470 (564)
.-.. .-..++ ++++.|+.+..+++|.++|..+.+.+..+... . ..+..+.|. +|. +.+..-.
T Consensus 124 ~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~---------lyan~w~ 190 (262)
T 3nol_A 124 NYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE---------IFANVWQ 190 (262)
T ss_dssp ECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE---------EEEEETT
T ss_pred ECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE---------EEEEEcc
Confidence 6322 222344 45666665555788999999988877665432 1 223456665 332 4566667
Q ss_pred CCeEEEEeCCCCeEEEEEeCC------------CCCEEEEEEcCCCCEEEEEeC
Q 008467 471 DSTVKLWDVELGKLLYSLNGH------------REPVYSLAFSPTGEYLASGSL 512 (564)
Q Consensus 471 dg~i~iwd~~~~~~~~~~~~h------------~~~i~~~~~spdg~~lasgs~ 512 (564)
++.|.+.|.++|+.+..+.-. ..-.+.|||+|+++.|...+.
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 889999999999998887532 124588999999877766554
No 251
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.72 E-value=8.9e-06 Score=85.41 Aligned_cols=256 Identities=13% Similarity=0.167 Sum_probs=148.0
Q ss_pred EEEEeCCCeEEEEEC-CCceeEeecCC---------CCCEEEEEeCCCCCEEEEee------CCCcEEEEECCCcceeEE
Q 008467 290 LATGSYDGQARIWST-NGDLKCTLSKH---------KGPIFSLKWNKKGDYLLTGS------CDKTAIVWDVKTEEWKQQ 353 (564)
Q Consensus 290 l~sg~~dg~i~vw~~-~~~~~~~~~~h---------~~~V~~l~~~~~~~~l~s~s------~D~~v~iwd~~~~~~~~~ 353 (564)
++.++.|+.+..+|. .|+.+...... ..|+. .++ .++.++ .++.|+.+|..+++.+-.
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-----~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~ 197 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-----VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWR 197 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-----ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-----ECC-EEEEEecccccCCCCeEEEEECCCCcEEEE
Confidence 777888999999996 46655443211 12221 133 555555 389999999999987766
Q ss_pred EeecccC----------------------------------------eEEEEcCCCceEEEEeC---------------C
Q 008467 354 FEFHSGP----------------------------------------TLDVDWRNNVSFATSST---------------D 378 (564)
Q Consensus 354 ~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~---------------d 378 (564)
+...... ...++...+..++..+. .
T Consensus 198 ~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~ 277 (599)
T 1w6s_A 198 AYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWT 277 (599)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTS
T ss_pred EcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCcccc
Confidence 5532211 01122223333433322 1
Q ss_pred CeEEEEEcCCCceeeEecC--CC--------cceEEEEEC-CCC---CEEEEEeCCCcEEEEeCCCCeeeeecccc----
Q 008467 379 NMIYVCKIGENRPIKTFAG--HQ--------GEVNCVKWD-PTG---SLLASCSDDVTAKIWNMKQDKYVHDLREH---- 440 (564)
Q Consensus 379 ~~i~~~~~~~~~~~~~~~~--h~--------~~i~~v~~~-~~~---~~las~s~dg~i~iwd~~~~~~~~~~~~~---- 440 (564)
+.|+.++..+++.+-.+.. |. .++ -+... .+| +.++.++.+|.+.++|..+++.+......
T Consensus 278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~-l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 356 (599)
T 1w6s_A 278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMM-LSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVN 356 (599)
T ss_dssp SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred ceEEEEeCCCCceeeEeecCCCccccccCCCccE-EEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcc
Confidence 4788889888887655543 21 112 12222 567 56788999999999999999877544311
Q ss_pred ---------cccEE--------------------------EEEEccCCCCC----------------CCCCCcEE-----
Q 008467 441 ---------SKEIY--------------------------TIRWSPTGSGT----------------NNPNQQLI----- 464 (564)
Q Consensus 441 ---------~~~i~--------------------------~i~~~p~~~~~----------------~~~~~~~~----- 464 (564)
..++. .++++|..... .......+
T Consensus 357 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 436 (599)
T 1w6s_A 357 VFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATL 436 (599)
T ss_dssp SEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred cccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccc
Confidence 11111 11222211000 00000000
Q ss_pred -EEE--Ee------CCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCC
Q 008467 465 -LAS--AS------FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG 535 (564)
Q Consensus 465 -l~s--~s------~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~ 535 (564)
+.. .+ .+|.|..||+.+++.+.+... ..++..-.....|..++.|+.||.|+.||.++|+++..+....+
T Consensus 437 ~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g 515 (599)
T 1w6s_A 437 NMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSG 515 (599)
T ss_dssp EEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred eeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCC
Confidence 111 01 458999999999999888752 22222212233567777799999999999999999998876544
Q ss_pred E--EEEEEccCCC-EEEEEEc
Q 008467 536 I--FEVCWNKEGD-KIAACFA 553 (564)
Q Consensus 536 i--~~~~w~~~g~-~la~~~~ 553 (564)
+ .-+.|..+|+ ++++...
T Consensus 516 ~~~~P~~y~~~G~qyv~~~~G 536 (599)
T 1w6s_A 516 AIGYPMTYTHKGTQYVAIYYG 536 (599)
T ss_dssp CCSCCEEEEETTEEEEEEEEC
T ss_pred cEeccEEEEeCCEEEEEEEcc
Confidence 3 2467778897 4544433
No 252
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.71 E-value=2.5e-05 Score=75.08 Aligned_cols=226 Identities=12% Similarity=0.059 Sum_probs=133.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCC--cEEEEECCCcceeEE
Q 008467 276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK--TAIVWDVKTEEWKQQ 353 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~--~v~iwd~~~~~~~~~ 353 (564)
.....++|+++|+++++-..++.|..|+..+.....+. ....+.++++.++|+.+++..... .|..+|..++++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~ 110 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL 110 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE
Confidence 34678999999998877778899999998876544333 234678999999998655543322 366667666654321
Q ss_pred EeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 008467 354 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 433 (564)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~ 433 (564)
.... .......++..+++..+++-+.++.|.++|..++..
T Consensus 111 ~~~~----------------------------------------~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~ 150 (306)
T 2p4o_A 111 LTLP----------------------------------------DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG 150 (306)
T ss_dssp EECT----------------------------------------TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE
T ss_pred EeCC----------------------------------------CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE
Confidence 1110 000112233334444444444566666666654321
Q ss_pred -eeec---------ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeE--EEEEeCCCCCEEEEEE
Q 008467 434 -VHDL---------REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKL--LYSLNGHREPVYSLAF 500 (564)
Q Consensus 434 -~~~~---------~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~--~~~~~~h~~~i~~~~~ 500 (564)
+... ...-.....+ +|++. .++++-+..+.|..+++.. ++. ...+... .....+++
T Consensus 151 ~v~~~~~~~~~~~~~~~~~~pngi--s~dg~--------~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~v 219 (306)
T 2p4o_A 151 SIWLEHPMLARSNSESVFPAANGL--KRFGN--------FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAF 219 (306)
T ss_dssp EEEEECGGGSCSSTTCCSCSEEEE--EEETT--------EEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEE
T ss_pred eEEEECCccccccccCCCCcCCCc--CcCCC--------EEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEE
Confidence 1100 0000112333 45442 3556667788999999864 321 1111111 23466899
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEEE--EecC-CCEEEEEEc---cCCCEEEEEEcC
Q 008467 501 SPTGEYLASGSLDKSMHIWSLKEGKIVKT--YTGN-GGIFEVCWN---KEGDKIAACFAN 554 (564)
Q Consensus 501 spdg~~lasgs~dg~i~iw~~~~~~~~~~--~~~~-~~i~~~~w~---~~g~~la~~~~~ 554 (564)
+++|+++++....+.|.+++.. |++... .... ..+.+++|. ++++.|.++...
T Consensus 220 d~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 220 DVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp BTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 9999988877778899999975 665332 2222 458899999 898887776553
No 253
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.69 E-value=1.9e-06 Score=88.30 Aligned_cols=183 Identities=9% Similarity=0.066 Sum_probs=123.7
Q ss_pred ceEEEEeCCCeEEEEEcCCCceeeEecCC-CcceEEEEE-C-CCCCEEEEEe------------------CCCcEEEEeC
Q 008467 370 VSFATSSTDNMIYVCKIGENRPIKTFAGH-QGEVNCVKW-D-PTGSLLASCS------------------DDVTAKIWNM 428 (564)
Q Consensus 370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h-~~~i~~v~~-~-~~~~~las~s------------------~dg~i~iwd~ 428 (564)
..|+....+..|.+.|+...+..+.+.-- ......+++ + |++++++.++ .++.+.+.|.
T Consensus 103 ~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~ 182 (595)
T 1fwx_A 103 FLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDA 182 (595)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEET
T ss_pred EEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEEC
Confidence 34666667778888888888776644311 234667887 5 9999988885 2457899999
Q ss_pred CCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-------------------------------------
Q 008467 429 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD------------------------------------- 471 (564)
Q Consensus 429 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d------------------------------------- 471 (564)
.+.+.+.++..-. .-..++.+|+|. ++++.+.+
T Consensus 183 ~t~~v~~qI~Vgg-~pd~~~~spdGk---------~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~ 252 (595)
T 1fwx_A 183 DKWEVAWQVLVSG-NLDNCDADYEGK---------WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 252 (595)
T ss_dssp TTTEEEEEEEESS-CCCCEEECSSSS---------EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred CCCeEEEEEEeCC-CccceEECCCCC---------EEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence 9887776654322 223455666654 22222222
Q ss_pred -CeEEEEeCCC--CeE-EEEEeCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCe------------EEEEEecCC
Q 008467 472 -STVKLWDVEL--GKL-LYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGK------------IVKTYTGNG 534 (564)
Q Consensus 472 -g~i~iwd~~~--~~~-~~~~~~h~~~i~~~~~spdg~~lasgs-~dg~i~iw~~~~~~------------~~~~~~~~~ 534 (564)
+.|.|.|.++ ++. +..+..- ....++.+||||+++++++ .+.+|.++|+.+.+ ++.......
T Consensus 253 i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~ 331 (595)
T 1fwx_A 253 LNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL 331 (595)
T ss_dssp ETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS
T ss_pred ECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC
Confidence 2477888876 444 4444321 2347799999999876655 67899999998653 445555556
Q ss_pred CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 535 GIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 535 ~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
+...++|+++|....+.+.+++|.+||+.
T Consensus 332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~ 360 (595)
T 1fwx_A 332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIE 360 (595)
T ss_dssp CEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred CcceEEECCCCeEEEEEecCCcEEEEEhh
Confidence 78999999999555677889999999963
No 254
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=0.00025 Score=77.65 Aligned_cols=314 Identities=10% Similarity=0.032 Sum_probs=187.4
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeecc-ccccCCCCeEEEEECCCCCEEEEEeC
Q 008467 217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG-RTNEKSKDVTTLDWNGEGTLLATGSY 295 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~~l~~s~~g~~l~sg~~ 295 (564)
..|.++...++|.+.+. +.+ -+.+|+..++.... ...... ........|.++...++|.+. .|+.
T Consensus 211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~-----------~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~ 276 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTN-----------FHNNPGNIHGALSSYIFSIKQLKDNKLW-IATE 276 (781)
T ss_dssp SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC----------------------CCCCEEEEEECTTSEEE-EEES
T ss_pred CceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEE-----------EEcCCCccccccCceEEEEEECCCCCEE-EEeC
Confidence 46888888888887664 344 57788865432110 000000 001124569999998888755 4566
Q ss_pred CCeEEEEECCCceeEeec---------------CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEe-----
Q 008467 296 DGQARIWSTNGDLKCTLS---------------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE----- 355 (564)
Q Consensus 296 dg~i~vw~~~~~~~~~~~---------------~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~----- 355 (564)
.+-|.+++........+. -....|.++...++|. |-.|+.++-|..++..+..+.....
T Consensus 277 ~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~ 355 (781)
T 3v9f_A 277 LNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQM 355 (781)
T ss_dssp SSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CC
T ss_pred CCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcccc
Confidence 456777886643322111 1345799999888886 5566767788999887665433211
Q ss_pred ----ecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEe----cCCCcceEEEEECCCCCEEEEEeCCCcEEEEe
Q 008467 356 ----FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF----AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 427 (564)
Q Consensus 356 ----~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~----~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd 427 (564)
.....+.++....+..+-.++.++.+..++...... ..+ ......|.++...+++.+.+ |+.++-+..++
T Consensus 356 ~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~ 433 (781)
T 3v9f_A 356 NESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVA-IYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYN 433 (781)
T ss_dssp CSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEE-ECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEEC
T ss_pred ccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeE-EEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEc
Confidence 112345556555444555555555677777654321 111 12345789999988888655 67767788899
Q ss_pred CCCCeeeeecc--cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC-----CCCEEEEEE
Q 008467 428 MKQDKYVHDLR--EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-----REPVYSLAF 500 (564)
Q Consensus 428 ~~~~~~~~~~~--~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-----~~~i~~~~~ 500 (564)
..+++...-.. .....|.++...+++. |-.|+. +-|..||..+++........ ...|.++..
T Consensus 434 ~~~~~~~~~~~~~~~~~~v~~i~~d~~g~----------lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 502 (781)
T 3v9f_A 434 TRLKKFQIIELEKNELLDVRVFYEDKNKK----------IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQ 502 (781)
T ss_dssp SSSCEEEECCSTTTCCCCEEEEEECTTSE----------EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEE
T ss_pred CCCCcEEEeccCCCCCCeEEEEEECCCCC----------EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEE
Confidence 87765432211 1345688887766552 333444 56888998876543322212 357999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-----CCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 501 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-----NGGIFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 501 spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~-----~~~i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
.++|.+.+.....| |..|+..+++.. .+.. ...|.++..+++|+..++.. +|-+..||
T Consensus 503 d~~g~lWigt~~~G-l~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d 565 (781)
T 3v9f_A 503 DSEGRFWIGTFGGG-VGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPS 565 (781)
T ss_dssp CTTCCEEEEESSSC-EEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESC
T ss_pred cCCCCEEEEEcCCC-EEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEEC
Confidence 99998776543355 788998776543 3432 23588999999998666553 55335554
No 255
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=0.00026 Score=77.60 Aligned_cols=315 Identities=12% Similarity=0.110 Sum_probs=184.5
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeecc-ccccCCCCeEEEEECCCCCEEEEEeC
Q 008467 217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG-RTNEKSKDVTTLDWNGEGTLLATGSY 295 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~~l~~s~~g~~l~sg~~ 295 (564)
..|.++...++|.+.+ |+.++-+..|+..++... ...+... ........|.++...++|.+.+. +.
T Consensus 163 ~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~i~~i~~d~~g~lwig-t~ 229 (781)
T 3v9f_A 163 EQTWTATEAEDGKLYI-GHVEGGLSILSLNDKSVK-----------HFVHDPQNPNSLPGNDVRCIYKDTNGNIWIG-TS 229 (781)
T ss_dssp CCEEEEEEEETTEEEE-EETTTEEEEEETTTTEEE-----------EECC--------CCSSEEEEEECTTCCEEEE-ET
T ss_pred cceEEEEECCCCCEEE-EecCCCeEEEcCCCCceE-----------eeecCCCCcccCCCCceeEEEEcCCCCEEEE-eC
Confidence 4577887777777665 555545777886543210 0000000 00112356999999888886654 44
Q ss_pred CCeEEEEECCCceeEeec--------CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEe------------
Q 008467 296 DGQARIWSTNGDLKCTLS--------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE------------ 355 (564)
Q Consensus 296 dg~i~vw~~~~~~~~~~~--------~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~------------ 355 (564)
+ -+.+|+........+. .....|.++...++|. |..|+..+-|.++|..++.+.....
T Consensus 230 ~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~ 307 (781)
T 3v9f_A 230 K-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNN 307 (781)
T ss_dssp T-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSST
T ss_pred C-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCC
Confidence 4 6888887654333221 1235699998888775 4456665668889987765433211
Q ss_pred --ecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEec----------CCCcceEEEEECCCCCEEEEEeCCCcE
Q 008467 356 --FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA----------GHQGEVNCVKWDPTGSLLASCSDDVTA 423 (564)
Q Consensus 356 --~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~----------~h~~~i~~v~~~~~~~~las~s~dg~i 423 (564)
.....+.++....+..+-.++.++-|..++..... ...+. -....|.++...++|.+. .|+.++-+
T Consensus 308 ~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl 385 (781)
T 3v9f_A 308 YSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPT-FHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGI 385 (781)
T ss_dssp TSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCS-CEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCE
T ss_pred CCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCc-ceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcE
Confidence 11223555544444445555555666666654432 22221 023468999998888765 56666678
Q ss_pred EEEeCCCCeeeeec---ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe--CCCCCEEEE
Q 008467 424 KIWNMKQDKYVHDL---REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GHREPVYSL 498 (564)
Q Consensus 424 ~iwd~~~~~~~~~~---~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~i~~~ 498 (564)
.+|+..++....-. ......|.++...+.+. |-.|+.++-|..+|..+++...... .....|.++
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~----------lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i 455 (781)
T 3v9f_A 386 NVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN----------LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVF 455 (781)
T ss_dssp EEEETTEEEEECC-----CCCSBEEEEEECTTSC----------EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEE
T ss_pred EEEECCCCeEEEccCCCCCCCcceEEEEECCCCC----------EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEE
Confidence 88987655432211 11235688887766553 3346666779999988776432221 134579999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec------CCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 499 AFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG------NGGIFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 499 ~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~------~~~i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
...++|.+.+. +.. -|..|+..+++....... ...|.+++.+++|+..++...+| +..+|
T Consensus 456 ~~d~~g~lwig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~ 521 (781)
T 3v9f_A 456 YEDKNKKIWIG-THA-GVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYT 521 (781)
T ss_dssp EECTTSEEEEE-ETT-EEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEEC
T ss_pred EECCCCCEEEE-ECC-ceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEe
Confidence 99998876654 444 588999887765443322 24588999999998766654344 65565
No 256
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.65 E-value=7.9e-05 Score=78.24 Aligned_cols=264 Identities=16% Similarity=0.197 Sum_probs=154.1
Q ss_pred CCEEEEEeCCCeEEEEEC-CCceeEeecCC---------CCCEEEEEeCCCCC-EEEEeeC------CCcEEEEECCCcc
Q 008467 287 GTLLATGSYDGQARIWST-NGDLKCTLSKH---------KGPIFSLKWNKKGD-YLLTGSC------DKTAIVWDVKTEE 349 (564)
Q Consensus 287 g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h---------~~~V~~l~~~~~~~-~l~s~s~------D~~v~iwd~~~~~ 349 (564)
+..++.++.|+.+..+|. .|+.+-..... ..|+.. .=..+|+ .++.++. ++.|..+|..+++
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~-~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~ 195 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIV-KDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE 195 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEE-ECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEe-CCCcCCcEEEEEeccccccCCCCEEEEEECCCCC
Confidence 456778889999999996 46655443221 123221 1011233 5666653 7899999999998
Q ss_pred eeEEEeecccC-------------------------------------------eEEEEcCCCceEEEEe----------
Q 008467 350 WKQQFEFHSGP-------------------------------------------TLDVDWRNNVSFATSS---------- 376 (564)
Q Consensus 350 ~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~---------- 376 (564)
.+-........ ...++...+..++..+
T Consensus 196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence 76544321100 0111112233444332
Q ss_pred --C-------C----CeEEEEEcCCCceeeEecC--CC--------cceEEEEEC-CCCC---EEEEEeCCCcEEEEeCC
Q 008467 377 --T-------D----NMIYVCKIGENRPIKTFAG--HQ--------GEVNCVKWD-PTGS---LLASCSDDVTAKIWNMK 429 (564)
Q Consensus 377 --~-------d----~~i~~~~~~~~~~~~~~~~--h~--------~~i~~v~~~-~~~~---~las~s~dg~i~iwd~~ 429 (564)
. | +.|+.+|..+++.+-.+.. |. .++. +... .+|+ .++.++.+|.+.++|..
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~ 354 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRS 354 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETT
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECC
Confidence 1 2 5788888888887666532 32 1221 2222 4674 78889999999999999
Q ss_pred CCeeeeecccccc--cEEEE----------------------------EEccCCC-------CCCCCCCcEEEEEE----
Q 008467 430 QDKYVHDLREHSK--EIYTI----------------------------RWSPTGS-------GTNNPNQQLILASA---- 468 (564)
Q Consensus 430 ~~~~~~~~~~~~~--~i~~i----------------------------~~~p~~~-------~~~~~~~~~~l~s~---- 468 (564)
+++.+..+..... ....+ ...|... ...+|....+++..
T Consensus 355 tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~ 434 (582)
T 1flg_A 355 NGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWK 434 (582)
T ss_dssp TCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEE
T ss_pred CCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcc
Confidence 9988765443210 00110 0111100 01122222222221
Q ss_pred ----------------------------eCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467 469 ----------------------------SFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 520 (564)
Q Consensus 469 ----------------------------s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~ 520 (564)
..+|.|..||+.+|+.+.+.... .++..-.....|..++.|+.||.++.||
T Consensus 435 ~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D 513 (582)
T 1flg_A 435 EDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp EEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred eeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEE
Confidence 13688999999999998887533 2222222222467788899999999999
Q ss_pred CCCCeEEEEEecCCCEE--EEEEccCCC-EEEEEEc
Q 008467 521 LKEGKIVKTYTGNGGIF--EVCWNKEGD-KIAACFA 553 (564)
Q Consensus 521 ~~~~~~~~~~~~~~~i~--~~~w~~~g~-~la~~~~ 553 (564)
.++|+++..+....++. -+.|..+|+ ++++...
T Consensus 514 ~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 514 AKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp TTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CCCCCEEEEecCCCCcccCceEEEECCEEEEEEEcc
Confidence 99999999998766554 377888997 4554433
No 257
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.62 E-value=2.6e-06 Score=87.35 Aligned_cols=217 Identities=11% Similarity=0.057 Sum_probs=138.3
Q ss_pred CCCCEEEEeeC-CCcEEEEECCCcceeEEEeecc-cCeEEEEc---CCCc-eEEEE-----------------eCCCeEE
Q 008467 326 KKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHS-GPTLDVDW---RNNV-SFATS-----------------STDNMIY 382 (564)
Q Consensus 326 ~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~---~~~~-~~~~~-----------------~~d~~i~ 382 (564)
++|++++.... +.+|.+.|+.+.++...+.... .....+.+ .+.. .|+++ ..++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 37777766554 5679999999999888665432 23444443 2333 33332 2234678
Q ss_pred EEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCC--------------------------------------cEE
Q 008467 383 VCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV--------------------------------------TAK 424 (564)
Q Consensus 383 ~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg--------------------------------------~i~ 424 (564)
+.|..+.+.+.++.--. ....++++|+|+++++++.+. .|.
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 88888776665554211 345678999999988887553 244
Q ss_pred EEeCCC--Cee-eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe------------EEEEEe
Q 008467 425 IWNMKQ--DKY-VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK------------LLYSLN 489 (564)
Q Consensus 425 iwd~~~--~~~-~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~------------~~~~~~ 489 (564)
+.|..+ ++. +..+.. .....++.++|+| +++++++..+.+|.++|+.+.+ .+..+.
T Consensus 258 VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDG--------k~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~ 328 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPI-ANNPHGCNMAPDK--------KHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 328 (595)
T ss_dssp EEECSGGGCCSSEEEEEE-ESSCCCEEECTTS--------SEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred EEeCcccCCceeEEEEec-CCCceEEEEcCCC--------CEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence 555544 222 222211 1223456666665 4678888889999999998652 334443
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC----------CeEEEEEecCCCEEEEE------EccCCCEEEEEEc
Q 008467 490 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE----------GKIVKTYTGNGGIFEVC------WNKEGDKIAACFA 553 (564)
Q Consensus 490 ~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~----------~~~~~~~~~~~~i~~~~------w~~~g~~la~~~~ 553 (564)
. ......++|+|+|...++.-.|+.|.+|++.+ ...+.....+-.+-..+ .+|||++|.++..
T Consensus 329 v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 329 L-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp C-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred C-CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 2 34568999999995455667799999999987 55677776554443333 4799999988744
No 258
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.60 E-value=7.3e-06 Score=75.19 Aligned_cols=178 Identities=11% Similarity=0.042 Sum_probs=126.8
Q ss_pred EEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccC-eEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecC
Q 008467 319 IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG 397 (564)
Q Consensus 319 V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~ 397 (564)
..+|.|+. +....+.+.+|.|+++|+.+++....+ ..... ...+...++..+++.-.++.++++|..+.+.+.++.-
T Consensus 57 tqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 57 TQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp EEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred cceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence 46788873 556667778889999999999998887 44322 1335666777888888899999999999998888764
Q ss_pred CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc--cc---cEEEEEEccCCCCCCCCCCcEEEEEEeCCC
Q 008467 398 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH--SK---EIYTIRWSPTGSGTNNPNQQLILASASFDS 472 (564)
Q Consensus 398 h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~--~~---~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg 472 (564)
- ..-..++ ++++.|+.+..+++|.++|..+.+.+..+... .. .+..+.|. +|. +.+....++
T Consensus 135 ~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~---------lyanvw~s~ 201 (268)
T 3nok_A 135 S-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV---------IYANIWHSS 201 (268)
T ss_dssp S-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE---------EEEEETTCS
T ss_pred C-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE---------EEEEECCCC
Confidence 2 2223444 46777766666889999999998877665432 21 33556665 332 456665788
Q ss_pred eEEEEeCCCCeEEEEEeCC-------------CCCEEEEEEcCCCCEEEEEe
Q 008467 473 TVKLWDVELGKLLYSLNGH-------------REPVYSLAFSPTGEYLASGS 511 (564)
Q Consensus 473 ~i~iwd~~~~~~~~~~~~h-------------~~~i~~~~~spdg~~lasgs 511 (564)
.|.+.|.++++.+..+.-. ..-.+.|||+|+++.|...+
T Consensus 202 ~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 202 DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9999999999998877532 12468899999875554444
No 259
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.60 E-value=0.00022 Score=69.17 Aligned_cols=265 Identities=11% Similarity=0.062 Sum_probs=143.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECCC-ceeEee----cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcce
Q 008467 276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTL----SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW 350 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~----~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~ 350 (564)
..+.++.|.+++..+++ +..|.| +...++ ..-... ......+.++.|++ + .++.++.++.|..-.-....+
T Consensus 36 ~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~S~DgG~tW 111 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLHTTDGGQSW 111 (327)
T ss_dssp SCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEEESSTTSSC
T ss_pred CcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEEECCCCCCc
Confidence 46889999888887774 556765 334443 211111 11244688999976 3 344455566555432112223
Q ss_pred eEEEee--cccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCce-eeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEe
Q 008467 351 KQQFEF--HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 427 (564)
Q Consensus 351 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd 427 (564)
...... .......+...++..+...+.++.|+.- .+.++. .....++...+..+++.+++.+++.+...+..+-+|
T Consensus 112 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d 190 (327)
T 2xbg_A 112 SQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWE 190 (327)
T ss_dssp EECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEEC
T ss_pred eECccccCCCCCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeC
Confidence 322111 1123444444333333334445555432 111211 112234556788999999998887765544445555
Q ss_pred C--CCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe-C---CCCCEEEEEEc
Q 008467 428 M--KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-G---HREPVYSLAFS 501 (564)
Q Consensus 428 ~--~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~---h~~~i~~~~~s 501 (564)
. .+...+. ......+..+.+.|++. +..++.+|.+++++...++.-..+. . +...+.+++|.
T Consensus 191 ~gG~tW~~~~--~~~~~~~~~~~~~~~g~----------~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~ 258 (327)
T 2xbg_A 191 PGQTAWEPHN--RTTSRRLHNMGFTPDGR----------LWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYR 258 (327)
T ss_dssp TTCSSCEEEE--CCSSSCEEEEEECTTSC----------EEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEES
T ss_pred CCCCceeECC--CCCCCccceeEECCCCC----------EEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEec
Confidence 3 3333332 23445678888877653 3345567888777533243322222 1 22358999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEEec----CCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467 502 PTGEYLASGSLDKSMHIWSLKEGKIVKTYTG----NGGIFEVCWNKEGDKIAACFANHTVCVL 560 (564)
Q Consensus 502 pdg~~lasgs~dg~i~iw~~~~~~~~~~~~~----~~~i~~~~w~~~g~~la~~~~~~~v~v~ 560 (564)
|++..++++. +|.| .+....|+--..... ...++++.|.+++. +.++..+|.|.-+
T Consensus 259 ~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~ 318 (327)
T 2xbg_A 259 TPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRY 318 (327)
T ss_dssp SSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEE
T ss_pred CCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEE
Confidence 9888777665 6666 455555543333321 24678899986655 4455577776554
No 260
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.59 E-value=4.2e-05 Score=74.05 Aligned_cols=260 Identities=9% Similarity=0.030 Sum_probs=133.8
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEee-------cc----ccccCCCCeEEEEECC
Q 008467 217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHV-------KG----RTNEKSKDVTTLDWNG 285 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~-------~~----~~~~~~~~V~~l~~s~ 285 (564)
....+++|+|+++++.++..++.|..|+..++.. ........ .+ ........+..+++.+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~ 89 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF---------VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL 89 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE---------EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce---------EEEecccccccccccccccchhccccCCCCceEEEcC
Confidence 3456789999999888888899999998654321 00000000 00 0000113478899997
Q ss_pred -CCCEEEEEeCCCeEEEEECCCceeEeecCC-----CCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCcceeEEEeecc
Q 008467 286 -EGTLLATGSYDGQARIWSTNGDLKCTLSKH-----KGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 358 (564)
Q Consensus 286 -~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h-----~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 358 (564)
+|++++ +...+.+..++..+.....+... ......+++.+ +|+..++-.... +.... ..
T Consensus 90 ~~g~l~v-~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~----~~~~~--~~------- 155 (322)
T 2fp8_A 90 QNNQLYI-VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTL----YDDRG--VQ------- 155 (322)
T ss_dssp TTTEEEE-EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSS----CCTTC--HH-------
T ss_pred CCCcEEE-EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCccc----ccccc--cc-------
Confidence 665544 44445578888765433322211 12345667777 665444432110 00000 00
Q ss_pred cCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEE-EEeCCCcEEEEeCCCCe--eee
Q 008467 359 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDK--YVH 435 (564)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~la-s~s~dg~i~iwd~~~~~--~~~ 435 (564)
..++....++.|+.++...+... .+...-...+.++++|+++.|. +-+..+.|.+|++.... ...
T Consensus 156 -----------~~~~~~~~~g~v~~~d~~~~~~~-~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~ 223 (322)
T 2fp8_A 156 -----------QIMDTSDKTGRLIKYDPSTKETT-LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAE 223 (322)
T ss_dssp -----------HHHHHTCCCEEEEEEETTTTEEE-EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEE
T ss_pred -----------eehcccCCCceEEEEeCCCCEEE-EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccc
Confidence 00000011223334443322211 1111112345789999998554 44567889999987421 111
Q ss_pred ecccccccEEEEEEccCCCCCCCCCCcEEEEEEe---------CCCeEEEEeCCCCeEEEEEeCCC----CCEEEEEEcC
Q 008467 436 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS---------FDSTVKLWDVELGKLLYSLNGHR----EPVYSLAFSP 502 (564)
Q Consensus 436 ~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s---------~dg~i~iwd~~~~~~~~~~~~h~----~~i~~~~~sp 502 (564)
.+....+ ...+++.++|. ++++... ..+.|..+|.. ++.+..+.... ..++++++ .
T Consensus 224 ~~~~~~g-P~gi~~d~~G~--------l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~ 292 (322)
T 2fp8_A 224 VLVKIPN-PGNIKRNADGH--------FWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-H 292 (322)
T ss_dssp EEEECSS-EEEEEECTTSC--------EEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-E
T ss_pred eEEeCCC-CCCeEECCCCC--------EEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-e
Confidence 1111122 56677776653 3444433 14678888875 77766664332 34666776 4
Q ss_pred CCCEEEEEeCCCcEEEEeCC
Q 008467 503 TGEYLASGSLDKSMHIWSLK 522 (564)
Q Consensus 503 dg~~lasgs~dg~i~iw~~~ 522 (564)
+|+++++....+.|.++++.
T Consensus 293 ~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 293 DGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp TTEEEEECSSCSEEEEEEC-
T ss_pred CCEEEEeecCCCceEEEecc
Confidence 66666666677888888875
No 261
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.58 E-value=2.1e-05 Score=71.59 Aligned_cols=180 Identities=13% Similarity=0.104 Sum_probs=124.6
Q ss_pred CEEEEEeCCCCCEEEEeeCC--CcEEEEECCCcceeEEEeecccCe-EEEEcCCCceEEEEeCCCeEEEEEcCCCceeeE
Q 008467 318 PIFSLKWNKKGDYLLTGSCD--KTAIVWDVKTEEWKQQFEFHSGPT-LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT 394 (564)
Q Consensus 318 ~V~~l~~~~~~~~l~s~s~D--~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~ 394 (564)
-..+|.|++ +..+.+.+.+ .+|+.+|+.+++............ ..+...++..+...-.++.++++|..+.+.+.+
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~t 100 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRAR 100 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEE
Confidence 356889986 4455555554 489999999999988876554332 334555677788878899999999999998888
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccccc-----ccEEEEEEccCCCCCCCCCCcEEEEEEe
Q 008467 395 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS-----KEIYTIRWSPTGSGTNNPNQQLILASAS 469 (564)
Q Consensus 395 ~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~i~~~p~~~~~~~~~~~~~l~s~s 469 (564)
+.-.. .-..+++ +++.|+.+..++.|.++|..+.+.+..+.... ..+..+.|. +| .+.+..-
T Consensus 101 i~~~~-~Gwglt~--dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G---------~lyanvw 167 (243)
T 3mbr_X 101 FRYPG-EGWALTS--DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG---------ELLANVW 167 (243)
T ss_dssp EECSS-CCCEEEE--CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT---------EEEEEET
T ss_pred EeCCC-CceEEee--CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC---------EEEEEEC
Confidence 76432 2234553 55555555558899999999988776654321 234455654 33 2455555
Q ss_pred CCCeEEEEeCCCCeEEEEEeCC-------------CCCEEEEEEcCCCCEEEEEe
Q 008467 470 FDSTVKLWDVELGKLLYSLNGH-------------REPVYSLAFSPTGEYLASGS 511 (564)
Q Consensus 470 ~dg~i~iwd~~~~~~~~~~~~h-------------~~~i~~~~~spdg~~lasgs 511 (564)
.+..|.+.|.++|+.+..+.-. ..-.+.|||+|+++.|...+
T Consensus 168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 6889999999999998877521 12468899999877665554
No 262
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.57 E-value=3.2e-05 Score=70.96 Aligned_cols=178 Identities=9% Similarity=0.014 Sum_probs=124.0
Q ss_pred EEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccccc
Q 008467 362 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS 441 (564)
Q Consensus 362 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~ 441 (564)
..+.+.++..+.+.+.++.|+++|..+++.+..+......-..+++.. +++.+..-.++.+.+||..+.+.+.++....
T Consensus 58 qGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~ 136 (268)
T 3nok_A 58 QGLVFHQGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSG 136 (268)
T ss_dssp EEEEEETTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSS
T ss_pred ceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCC
Confidence 455666777888899999999999999888776621111123455543 3555555578999999999999888776432
Q ss_pred ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC--C---CCEEEEEEcCCCCEEEEEeCCCcE
Q 008467 442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH--R---EPVYSLAFSPTGEYLASGSLDKSM 516 (564)
Q Consensus 442 ~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~---~~i~~~~~spdg~~lasgs~dg~i 516 (564)
.-..+++ ++. .|..+..++.|.++|..+.+.+.++.-. . ..++.+.|. +|+..|..-.+..|
T Consensus 137 -eGwGLt~--Dg~---------~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I 203 (268)
T 3nok_A 137 -EGWGLCY--WNG---------KLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDV 203 (268)
T ss_dssp -CCCCEEE--ETT---------EEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEE
T ss_pred -ceeEEec--CCC---------EEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeE
Confidence 2233442 232 2344446889999999999888776432 1 235677777 78766666568899
Q ss_pred EEEeCCCCeEEEEEecC--------------CCEEEEEEccCCCEEEEEEc
Q 008467 517 HIWSLKEGKIVKTYTGN--------------GGIFEVCWNKEGDKIAACFA 553 (564)
Q Consensus 517 ~iw~~~~~~~~~~~~~~--------------~~i~~~~w~~~g~~la~~~~ 553 (564)
.+.|.++|+++..+... ...+.+||+|+++.|.+...
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 99999999999888532 24689999999876666543
No 263
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.57 E-value=3.8e-06 Score=90.13 Aligned_cols=269 Identities=15% Similarity=0.124 Sum_probs=145.3
Q ss_pred EEEECC-CCCEEEEEECCC-----------cEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 221 ACAWSP-AGSLLASGSGDS-----------TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 221 ~~~~sp-~~~~lasgs~D~-----------~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
++++.| ++++++.|+.+. .+.+||+.+++... +.. .. ........++++..+|+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~------~~~--~~------~~~~~~~~~~~~~~~g~ 255 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD------RTV--TV------TKHDMFCPGISMDGNGQ 255 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC------CEE--EE------CSCCCSSCEEEECTTSC
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe------Ccc--cC------CCCCCccccccCCCCCC
Confidence 556777 889999988643 57888887654211 110 00 01112233567788999
Q ss_pred EEEEEeC-CCeEEEEECCCceeEeecCCC--CCEEEEEeCCCCCEEEEee-CC-----CcEEEEECCCcceeEEEeeccc
Q 008467 289 LLATGSY-DGQARIWSTNGDLKCTLSKHK--GPIFSLKWNKKGDYLLTGS-CD-----KTAIVWDVKTEEWKQQFEFHSG 359 (564)
Q Consensus 289 ~l~sg~~-dg~i~vw~~~~~~~~~~~~h~--~~V~~l~~~~~~~~l~s~s-~D-----~~v~iwd~~~~~~~~~~~~~~~ 359 (564)
+++.|+. +..+.+||.....-..+.... ..-.++...++|+.++.|+ .+ ..+.+||+.+..|...-.....
T Consensus 256 lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~ 335 (656)
T 1k3i_A 256 IVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVN 335 (656)
T ss_dssp EEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSG
T ss_pred EEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccc
Confidence 9999985 458999997543322221111 1112345567888888888 44 5799999998887653110000
Q ss_pred CeE-----EEEcCCCceEEEEeCC---------CeEEEEEcCCCceeeEecCCC---------cceEEEEEC-CCCCEEE
Q 008467 360 PTL-----DVDWRNNVSFATSSTD---------NMIYVCKIGENRPIKTFAGHQ---------GEVNCVKWD-PTGSLLA 415 (564)
Q Consensus 360 ~~~-----~~~~~~~~~~~~~~~d---------~~i~~~~~~~~~~~~~~~~h~---------~~i~~v~~~-~~~~~la 415 (564)
+.. .+.-.++..++.++.+ ..+..|+.....-......+. ..-.++.|. .++++++
T Consensus 336 p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v 415 (656)
T 1k3i_A 336 PMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILT 415 (656)
T ss_dssp GGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEE
T ss_pred ccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEE
Confidence 000 0111233344444433 345667766554222221111 122344443 3678888
Q ss_pred EEeCCC-----------cEEEEeCCCCeeeeec--ccccccE-EEEEEccCCCCCCCCCCcEEEEEEeCC----------
Q 008467 416 SCSDDV-----------TAKIWNMKQDKYVHDL--REHSKEI-YTIRWSPTGSGTNNPNQQLILASASFD---------- 471 (564)
Q Consensus 416 s~s~dg-----------~i~iwd~~~~~~~~~~--~~~~~~i-~~i~~~p~~~~~~~~~~~~~l~s~s~d---------- 471 (564)
.|+.++ .+.+||..+....... ..+.... .+....|++. +++.|+.+
T Consensus 416 ~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~---------i~v~GG~~~~~~~~~~~~ 486 (656)
T 1k3i_A 416 FGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGS---------TFITGGQRRGIPFEDSTP 486 (656)
T ss_dssp ECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSC---------EEEECCBSBCCTTCCCSB
T ss_pred EeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCC---------EEEECCcccCcCcCCCCc
Confidence 887543 5778887765543322 1111111 2233345543 55666543
Q ss_pred -CeEEEEeCCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEeC
Q 008467 472 -STVKLWDVELGKLLY--SLNGHREPVYSLAFSPTGEYLASGSL 512 (564)
Q Consensus 472 -g~i~iwd~~~~~~~~--~~~~h~~~i~~~~~spdg~~lasgs~ 512 (564)
..+.+||..+.+-.. .+...+....+..+.|||+.++.||.
T Consensus 487 ~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 487 VFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred ccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 468999988765321 11111222234567899999999985
No 264
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.56 E-value=1.9e-05 Score=72.50 Aligned_cols=177 Identities=12% Similarity=0.137 Sum_probs=120.7
Q ss_pred EEEEcCCCceEEEEeCCC--eEEEEEcCCCceeeEecCCCcc-eEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeeeeec
Q 008467 362 LDVDWRNNVSFATSSTDN--MIYVCKIGENRPIKTFAGHQGE-VNCVKWDPTGSLL-ASCSDDVTAKIWNMKQDKYVHDL 437 (564)
Q Consensus 362 ~~~~~~~~~~~~~~~~d~--~i~~~~~~~~~~~~~~~~h~~~-i~~v~~~~~~~~l-as~s~dg~i~iwd~~~~~~~~~~ 437 (564)
..+.+.++..+.+.+.++ .|+++|..+++.+..+.-.... --.++.. +..| +..-.++.+.+||..+.+.+.++
T Consensus 46 qGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ti 123 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVRSF 123 (262)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred ceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEEEE
Confidence 345555666677777765 8999999999887776543322 1234443 4444 44445889999999999988877
Q ss_pred ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC--C---CCEEEEEEcCCCCEEEEEeC
Q 008467 438 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH--R---EPVYSLAFSPTGEYLASGSL 512 (564)
Q Consensus 438 ~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~---~~i~~~~~spdg~~lasgs~ 512 (564)
.... .-..++ +++. .+++| ..++.|.++|..+.+.+.++.-. . ..++.+.|. +|+..|..-.
T Consensus 124 ~~~~-eG~glt--~dg~--------~L~~S-dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~ 190 (262)
T 3nol_A 124 NYDG-EGWGLT--HNDQ--------YLIMS-DGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ 190 (262)
T ss_dssp ECSS-CCCCEE--ECSS--------CEEEC-CSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred ECCC-CceEEe--cCCC--------EEEEE-CCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc
Confidence 6432 112333 3332 23333 44788999999999888776432 1 235567786 7876666667
Q ss_pred CCcEEEEeCCCCeEEEEEecC-------------CCEEEEEEccCCCEEEEEEc
Q 008467 513 DKSMHIWSLKEGKIVKTYTGN-------------GGIFEVCWNKEGDKIAACFA 553 (564)
Q Consensus 513 dg~i~iw~~~~~~~~~~~~~~-------------~~i~~~~w~~~g~~la~~~~ 553 (564)
+..|.+.|.++|+++..+... ...+.+||+|+++.|.+.+.
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 889999999999999888642 24589999999988877654
No 265
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.54 E-value=0.00023 Score=69.72 Aligned_cols=242 Identities=9% Similarity=-0.006 Sum_probs=149.0
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEe-eCCCcEEEEECCCcceeEEEee
Q 008467 278 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEF 356 (564)
Q Consensus 278 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~ 356 (564)
.+|.+..+++ +|+.+ ....|+..+..+.....+......+.+++|++.+..|+-. ...+.|..+++........+..
T Consensus 36 ~~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 36 RSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp SCEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred CcccccccCc-eeEee-cccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 3455555543 33333 3345777777765444443334457899999876666544 4568899999877654333222
Q ss_pred --cccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEE-EEEeCC-CcEEEEeCCCCe
Q 008467 357 --HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDD-VTAKIWNMKQDK 432 (564)
Q Consensus 357 --~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l-as~s~d-g~i~iwd~~~~~ 432 (564)
....-+.++|.....+.+-...+.|.+.+.........+...-...+.++++|.+..| ++-... +.|..+++....
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~ 193 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 193 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC
Confidence 2233567888888888888888899999987654333333344567899999865554 444444 778888876543
Q ss_pred eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC
Q 008467 433 YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL 512 (564)
Q Consensus 433 ~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~ 512 (564)
....+...-.....|+++|.+. .+..+-+..+.|..+|+........+.........|++ ..+..+.+-..
T Consensus 194 ~~~~~~~~~~~PnGla~d~~~~--------~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~ 264 (349)
T 3v64_C 194 RRIIADTHLFWPNGLTIDYAGR--------RMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWH 264 (349)
T ss_dssp CEESCCSSCSCEEEEEEETTTT--------EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETT
T ss_pred cEEEEECCCCCcceEEEeCCCC--------EEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCC
Confidence 3222222233457889987643 24455556788999998743222223323345678888 34555555556
Q ss_pred CCcEEEEeCCCCeEEEEE
Q 008467 513 DKSMHIWSLKEGKIVKTY 530 (564)
Q Consensus 513 dg~i~iw~~~~~~~~~~~ 530 (564)
.+.|..++..+|+.+..+
T Consensus 265 ~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 265 TKSINSANKFTGKNQEII 282 (349)
T ss_dssp TTEEEEEETTTCCSCEEE
T ss_pred CCeEEEEEccCCCccEEe
Confidence 788988887677655544
No 266
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.51 E-value=5.3e-05 Score=79.55 Aligned_cols=229 Identities=14% Similarity=0.105 Sum_probs=139.8
Q ss_pred CCEEEEeeCCCcEEEEECCCcceeEEEeecc---------cCeEEEEcCCCc-eEEEEe------CCCeEEEEEcCCCce
Q 008467 328 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS---------GPTLDVDWRNNV-SFATSS------TDNMIYVCKIGENRP 391 (564)
Q Consensus 328 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~------~d~~i~~~~~~~~~~ 391 (564)
+..++.++.|+.|..+|..+++.+-.+.... .+++.-.-.+.. .++.++ .++.|+.+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 5678888999999999999998776554322 122211100111 333332 367888888877765
Q ss_pred eeEecCCCc-----------------------------------------ceEEEEECCCCCEEEEEeC-----------
Q 008467 392 IKTFAGHQG-----------------------------------------EVNCVKWDPTGSLLASCSD----------- 419 (564)
Q Consensus 392 ~~~~~~h~~-----------------------------------------~i~~v~~~~~~~~las~s~----------- 419 (564)
+-.+..... .-..++++|...+++.++.
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 443321100 0023566777777776653
Q ss_pred ---------C----CcEEEEeCCCCeeeeeccc--cc--------ccEEEEEEc-cCCCCCCCCCCcEEEEEEeCCCeEE
Q 008467 420 ---------D----VTAKIWNMKQDKYVHDLRE--HS--------KEIYTIRWS-PTGSGTNNPNQQLILASASFDSTVK 475 (564)
Q Consensus 420 ---------d----g~i~iwd~~~~~~~~~~~~--~~--------~~i~~i~~~-p~~~~~~~~~~~~~l~s~s~dg~i~ 475 (564)
| +.|..+|.++++.+-.++. |. .++.. ... .+|. ...+++.++.+|.++
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~-~~~~~~G~------~~~~v~~~~~~G~l~ 349 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLF-DYKAKDGK------IVKATAHADRNGFFY 349 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEE-EEECSSSC------EEEEEEEECTTSEEE
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEE-eeecCCCC------EEEEEEEECCCceEE
Confidence 2 5899999999988766542 21 11111 110 1221 013677899999999
Q ss_pred EEeCCCCeEEEEEeCCC-------------CCE--------------------------------EEEEEcCCCCEEEEE
Q 008467 476 LWDVELGKLLYSLNGHR-------------EPV--------------------------------YSLAFSPTGEYLASG 510 (564)
Q Consensus 476 iwd~~~~~~~~~~~~h~-------------~~i--------------------------------~~~~~spdg~~lasg 510 (564)
++|.++|+.+....... .++ ..++|+|+...+.+.
T Consensus 350 ~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~ 429 (582)
T 1flg_A 350 VVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVP 429 (582)
T ss_dssp EEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEE
T ss_pred EEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEe
Confidence 99999999987765331 011 135677765554432
Q ss_pred e---------------------------------CCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcE
Q 008467 511 S---------------------------------LDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTV 557 (564)
Q Consensus 511 s---------------------------------~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v 557 (564)
. .+|.|..||+.+|+.+..+.....+..-.....|..+.++..|+.+
T Consensus 430 ~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l 509 (582)
T 1flg_A 430 ANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYF 509 (582)
T ss_dssp EECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEE
T ss_pred chhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcE
Confidence 2 3688999999999998877654333222223357788888899999
Q ss_pred EEEEee
Q 008467 558 CVLDFR 563 (564)
Q Consensus 558 ~v~~~~ 563 (564)
+.||.+
T Consensus 510 ~A~D~~ 515 (582)
T 1flg_A 510 KAFDAK 515 (582)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 988864
No 267
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.47 E-value=0.00014 Score=66.16 Aligned_cols=179 Identities=11% Similarity=0.064 Sum_probs=123.1
Q ss_pred eEEEEcCCCceEEEEeCC--CeEEEEEcCCCceeeEecCCCcc-eEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeec
Q 008467 361 TLDVDWRNNVSFATSSTD--NMIYVCKIGENRPIKTFAGHQGE-VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 437 (564)
Q Consensus 361 ~~~~~~~~~~~~~~~~~d--~~i~~~~~~~~~~~~~~~~h~~~-i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~ 437 (564)
+..+.+.++..+.+.+.+ ..|+++|..+++.+....-.... --.++.. .+++.+..-.++.+.+||..+.+.+.++
T Consensus 23 tqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti 101 (243)
T 3mbr_X 23 TEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRARF 101 (243)
T ss_dssp EEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred cccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEE
Confidence 345666676677777765 48999999999887766533221 1234443 2445555556899999999999988887
Q ss_pred ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC-----CCEEEEEEcCCCCEEEEEeC
Q 008467 438 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-----EPVYSLAFSPTGEYLASGSL 512 (564)
Q Consensus 438 ~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-----~~i~~~~~spdg~~lasgs~ 512 (564)
.... .-..+++ ++. .+++| ..++.|.++|..+.+.+.++.-.. ..++-+.|. +|+..|..-.
T Consensus 102 ~~~~-~Gwglt~--dg~--------~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~ 168 (243)
T 3mbr_X 102 RYPG-EGWALTS--DDS--------HLYMS-DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWL 168 (243)
T ss_dssp ECSS-CCCEEEE--CSS--------CEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred eCCC-CceEEee--CCC--------EEEEE-CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECC
Confidence 6433 2244443 332 23444 458899999999998887765321 245667765 7776666656
Q ss_pred CCcEEEEeCCCCeEEEEEecC--------------CCEEEEEEccCCCEEEEEEc
Q 008467 513 DKSMHIWSLKEGKIVKTYTGN--------------GGIFEVCWNKEGDKIAACFA 553 (564)
Q Consensus 513 dg~i~iw~~~~~~~~~~~~~~--------------~~i~~~~w~~~g~~la~~~~ 553 (564)
+..|.+.|.++|+++..+... ...+.+||+|+++.|.+...
T Consensus 169 s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 169 TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 789999999999999888622 23589999999987776644
No 268
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.45 E-value=0.00025 Score=70.52 Aligned_cols=241 Identities=9% Similarity=-0.000 Sum_probs=148.6
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCcceeEEEee--
Q 008467 280 TLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEF-- 356 (564)
Q Consensus 280 ~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~-- 356 (564)
|.+..+.+ +|+.+ ....|+..+..+.....+......+.+++|++.+..|+ +-...+.|..+++........+..
T Consensus 81 C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~ 158 (386)
T 3v65_B 81 CKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL 158 (386)
T ss_dssp EEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC
T ss_pred ECCccccc-eeEee-cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC
Confidence 44444433 33333 33567778877654444433445578999998666655 445667899999877654333221
Q ss_pred cccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEE-eCC-CcEEEEeCCCCeee
Q 008467 357 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC-SDD-VTAKIWNMKQDKYV 434 (564)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~-s~d-g~i~iwd~~~~~~~ 434 (564)
....-+.++|.....+++-...+.|.+.+.........+...-...+.++++|.+..|... ... +.|..+++......
T Consensus 159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~ 238 (386)
T 3v65_B 159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR 238 (386)
T ss_dssp SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE
Confidence 1223467788888888888888888888876554333333344567899999876655444 344 67888887654332
Q ss_pred eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCC
Q 008467 435 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK 514 (564)
Q Consensus 435 ~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg 514 (564)
..+...-.....|+++|.+. .+..+-+..+.|..+|+........+.........|++ ..+..+.+-...+
T Consensus 239 ~~~~~~~~~PnGlavd~~~~--------~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~ 309 (386)
T 3v65_B 239 IIADTHLFWPNGLTIDYAGR--------RMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTK 309 (386)
T ss_dssp EEECSSCSCEEEEEEEGGGT--------EEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTT
T ss_pred EEEECCCCCeeeEEEeCCCC--------EEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCC
Confidence 22222233457889987543 24455566788999998743322223323345678888 3455556666778
Q ss_pred cEEEEeCCCCeEEEEEe
Q 008467 515 SMHIWSLKEGKIVKTYT 531 (564)
Q Consensus 515 ~i~iw~~~~~~~~~~~~ 531 (564)
.|..++..+|+.+..+.
T Consensus 310 ~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 310 SINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEEEETTTCCSCEEEE
T ss_pred eEEEEECCCCcceEEEc
Confidence 89999977777655554
No 269
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.42 E-value=3.3e-05 Score=84.14 Aligned_cols=193 Identities=13% Similarity=0.122 Sum_probs=112.9
Q ss_pred CCcc-ceEEEEEC-CCCCEEEEEEC-C----CcEEEEeCCCC-CCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC
Q 008467 214 GHTS-EVCACAWS-PAGSLLASGSG-D----STARIWTIADG-TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 285 (564)
Q Consensus 214 ~h~~-~V~~~~~s-p~~~~lasgs~-D----~~i~iW~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 285 (564)
+|.. .+...+|| |||++||.+.. + ..|+++|+.++ .... .. +. .....++|+|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~----~~-----~~----------~~~~~~~Wsp 230 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA----DK-----VS----------GTNGEIVWGP 230 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC----CC-----EE----------EECSCCEECS
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC----cc-----cc----------CceeeEEEec
Confidence 4543 67889999 99998886542 2 35999999876 4210 00 00 0123578999
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCce---eEeec-CCCCCEEEEEeCCCCCEEEEeeCC---CcEEEEECCCc--ce-
Q 008467 286 EGTLLATGSYD-----GQARIWSTNGDL---KCTLS-KHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTE--EW- 350 (564)
Q Consensus 286 ~g~~l~sg~~d-----g~i~vw~~~~~~---~~~~~-~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~~--~~- 350 (564)
||+.|+....+ ..|.+++..+.. ...+. ....-..++.|+|+|++|+..+.+ ..|.++|+.++ ..
T Consensus 231 Dg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~ 310 (751)
T 2xe4_A 231 DHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNT 310 (751)
T ss_dssp STTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCC
T ss_pred CCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCce
Confidence 99888877765 257777776432 12222 223446788999999998765533 35788898775 23
Q ss_pred -eEEEeecccCeEEEEcCCCceE-EEEeCC----CeEEEEEcCCCceeeE-ecCCCc--ceEEEEECCCCCEEEEEeCCC
Q 008467 351 -KQQFEFHSGPTLDVDWRNNVSF-ATSSTD----NMIYVCKIGENRPIKT-FAGHQG--EVNCVKWDPTGSLLASCSDDV 421 (564)
Q Consensus 351 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~d----~~i~~~~~~~~~~~~~-~~~h~~--~i~~v~~~~~~~~las~s~dg 421 (564)
.............++|..+..| +.+..+ ..|+.+++........ +..|.. .+..+.+. .+.++++...++
T Consensus 311 ~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g 389 (751)
T 2xe4_A 311 LEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAG 389 (751)
T ss_dssp EEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETT
T ss_pred eEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCC
Confidence 2222223445566665444444 333332 3677778764222122 223333 45566665 345667777788
Q ss_pred cEEEE
Q 008467 422 TAKIW 426 (564)
Q Consensus 422 ~i~iw 426 (564)
..+||
T Consensus 390 ~~~l~ 394 (751)
T 2xe4_A 390 LTRIW 394 (751)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 65554
No 270
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.40 E-value=0.0018 Score=62.35 Aligned_cols=225 Identities=11% Similarity=0.069 Sum_probs=135.7
Q ss_pred CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCC----cceeEEEe--ecccCeEEEEcCCC
Q 008467 297 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKT----EEWKQQFE--FHSGPTLDVDWRNN 369 (564)
Q Consensus 297 g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~----~~~~~~~~--~~~~~~~~~~~~~~ 369 (564)
..|+..+..+.....+......+.++.|++.+..|+ +-...+.|..+++.+ ......+. .....-+.++|...
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~ 89 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence 467777876543333333345678999998766655 445568899999876 22222221 12233567788888
Q ss_pred ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-C-CcEEEEeCCCCeeeeecccccccEEEE
Q 008467 370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-D-VTAKIWNMKQDKYVHDLREHSKEIYTI 447 (564)
Q Consensus 370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-d-g~i~iwd~~~~~~~~~~~~~~~~i~~i 447 (564)
..+++-...+.|.+++.........+.........++++|.+..|+.+.. . +.|...++............-.....+
T Consensus 90 ~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gl 169 (316)
T 1ijq_A 90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI 169 (316)
T ss_dssp EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEE
T ss_pred eEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEE
Confidence 88888888899999988754433333333456789999986665544443 3 678888876433221112223345788
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467 448 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 525 (564)
Q Consensus 448 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~ 525 (564)
+++|.+. .+..+-+..+.|..+|+.... .+............|++. .+..+.+-...+.|..++..+|+
T Consensus 170 a~d~~~~--------~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 170 TLDLLSG--------RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEETTTT--------EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred EEeccCC--------EEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 8887643 244555667899999987322 222211122345778885 35555666667899999987776
Q ss_pred EEEEE
Q 008467 526 IVKTY 530 (564)
Q Consensus 526 ~~~~~ 530 (564)
.+..+
T Consensus 241 ~~~~i 245 (316)
T 1ijq_A 241 DVNLL 245 (316)
T ss_dssp CCEEE
T ss_pred ceEEE
Confidence 55444
No 271
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.36 E-value=0.00038 Score=70.19 Aligned_cols=238 Identities=10% Similarity=0.127 Sum_probs=141.3
Q ss_pred CeEEEEECC-CCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCC-C---cEEEEECCCccee
Q 008467 277 DVTTLDWNG-EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-K---TAIVWDVKTEEWK 351 (564)
Q Consensus 277 ~V~~l~~s~-~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-~---~v~iwd~~~~~~~ 351 (564)
....|+|+| ++..|..+...+.|+.++..+.....+.........++|+++|++|+.+... + ...+|-...+.+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~ 217 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK 217 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence 457889998 3555555555588999998876555554455567899999999966665542 2 1222221222111
Q ss_pred EEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEEEeCCCcEEEEeCCC
Q 008467 352 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQ 430 (564)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las~s~dg~i~iwd~~~ 430 (564)
.. ..+.. ......++++| ++.++++-..++.|..++..+
T Consensus 218 ~~------------------------------------~~l~~----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~ 257 (430)
T 3tc9_A 218 VI------------------------------------TELTK----GQNCNGAETHPINGELYFNSWNAGQVFRYDFTT 257 (430)
T ss_dssp SE------------------------------------EEEEE----CSSCCCEEECTTTCCEEEEETTTTEEEEEETTT
T ss_pred ee------------------------------------eeecc----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence 00 00001 12245678899 777777777788999999876
Q ss_pred Ceeeeeccc-ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--CeE--EEEEeCC--------------
Q 008467 431 DKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--GKL--LYSLNGH-------------- 491 (564)
Q Consensus 431 ~~~~~~~~~-~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~--~~~~~~h-------------- 491 (564)
......+.. ....-..++|+|++. .++++-...+.|..++... +.. +..+.+.
T Consensus 258 ~~~~~~~~~~~~~~P~gia~~pdG~--------~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a 329 (430)
T 3tc9_A 258 QETTPLFTIQDSGWEFHIQFHPSGN--------YAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKA 329 (430)
T ss_dssp TEEEEEEECSSSSCCEEEEECTTSS--------EEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGC
T ss_pred CcEEEEEEcCCCCcceeEEEcCCCC--------EEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcce
Confidence 654221111 112346789988874 3455556778899987652 222 1122111
Q ss_pred -CCCEE-EEEEc--------CCCCEEEEEeCCCcEEEEeCCCCeEEEEEec---------CC---------CEEEEEEcc
Q 008467 492 -REPVY-SLAFS--------PTGEYLASGSLDKSMHIWSLKEGKIVKTYTG---------NG---------GIFEVCWNK 543 (564)
Q Consensus 492 -~~~i~-~~~~s--------pdg~~lasgs~dg~i~iw~~~~~~~~~~~~~---------~~---------~i~~~~w~~ 543 (564)
-.... .++.. ++|.++++=...++|+.++ .+|.+....-. .+ ....|++++
T Consensus 330 ~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~ 408 (430)
T 3tc9_A 330 RMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDE 408 (430)
T ss_dssp BBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEET
T ss_pred EeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEEC
Confidence 01123 45553 4566666666678899998 45654433311 11 368999999
Q ss_pred C-CCEEEEEEcCCcEEEEEee
Q 008467 544 E-GDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 544 ~-g~~la~~~~~~~v~v~~~~ 563 (564)
+ |..+++-..+..|+.++..
T Consensus 409 ~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 409 ERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCEEEEEECCCCeEEEEccC
Confidence 5 6677777778889888763
No 272
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.35 E-value=2.7e-05 Score=84.76 Aligned_cols=225 Identities=11% Similarity=0.064 Sum_probs=118.3
Q ss_pred CeEEEEEC-CCCCEEEEEeC-CC----eEEEEECCCc-eeEeecCC-CCCEEEEEeCCCCCEEEEeeCCC-----cEEEE
Q 008467 277 DVTTLDWN-GEGTLLATGSY-DG----QARIWSTNGD-LKCTLSKH-KGPIFSLKWNKKGDYLLTGSCDK-----TAIVW 343 (564)
Q Consensus 277 ~V~~l~~s-~~g~~l~sg~~-dg----~i~vw~~~~~-~~~~~~~h-~~~V~~l~~~~~~~~l~s~s~D~-----~v~iw 343 (564)
.+...+|| |||++||.+.. +| .|++++..+. .. +..+ .....++.|+|+|+.|+....|. .|.++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT--IADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC--CCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe--CCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 57788999 99998886543 33 4999998754 31 1111 11124678999999888776552 23334
Q ss_pred ECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEec-CCCcceEEEEECCCCCEEEEEeC---
Q 008467 344 DVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSD--- 419 (564)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~v~~~~~~~~las~s~--- 419 (564)
++.++.. .....+. .+......+.|+|||++|+..+.
T Consensus 253 ~lgt~~~---------------------------------------~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 293 (751)
T 2xe4_A 253 VMGKLQS---------------------------------------EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPE 293 (751)
T ss_dssp ETTSCGG---------------------------------------GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSS
T ss_pred ECCCCch---------------------------------------hcEEEEecCCCceEEEEEECCCCCEEEEEecCCC
Confidence 4332210 0111221 12233557899999998876553
Q ss_pred CCcEEEEeCCCC--ee-eeecc-cccccEEEEEEccCCCCCCCCCCcEEEEEEeCC----CeEEEEeCCCCeEEEE-EeC
Q 008467 420 DVTAKIWNMKQD--KY-VHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFD----STVKLWDVELGKLLYS-LNG 490 (564)
Q Consensus 420 dg~i~iwd~~~~--~~-~~~~~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~-~~~ 490 (564)
...|.++|+.++ .. +..+. ......+++.|...+ .+++....+ ..|..+|+.++..... +..
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~---------~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~ 364 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS---------HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD 364 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT---------EEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC
T ss_pred CceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC---------EEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC
Confidence 345778888764 22 02232 233444555543322 234444443 3677777764211122 333
Q ss_pred CCC--CEEEEEEcCCCCE-EEEEeCCCc--EEEEeC-------CCCeEEEEEe--cCCCEEEEEE----ccCCCEEEEEE
Q 008467 491 HRE--PVYSLAFSPTGEY-LASGSLDKS--MHIWSL-------KEGKIVKTYT--GNGGIFEVCW----NKEGDKIAACF 552 (564)
Q Consensus 491 h~~--~i~~~~~spdg~~-lasgs~dg~--i~iw~~-------~~~~~~~~~~--~~~~i~~~~w----~~~g~~la~~~ 552 (564)
+.. .+..+++. +.+ +++...++. |.++++ .+++.+..+. ....+..++| +++++.++..+
T Consensus 365 ~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 442 (751)
T 2xe4_A 365 HSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEY 442 (751)
T ss_dssp CCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEE
T ss_pred CCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEE
Confidence 433 34455554 444 456667775 555564 3444133332 2233456655 44776555443
Q ss_pred c
Q 008467 553 A 553 (564)
Q Consensus 553 ~ 553 (564)
.
T Consensus 443 s 443 (751)
T 2xe4_A 443 S 443 (751)
T ss_dssp E
T ss_pred e
Confidence 3
No 273
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.30 E-value=0.00084 Score=61.83 Aligned_cols=201 Identities=9% Similarity=0.161 Sum_probs=128.4
Q ss_pred eecCCCCCEEEEEeCCCCCEEEE-eeCCCcEEEEECCCcceeEEEeecc-cCeEEEEcCCCceEE-EEeCCCeEEEEEcC
Q 008467 311 TLSKHKGPIFSLKWNKKGDYLLT-GSCDKTAIVWDVKTEEWKQQFEFHS-GPTLDVDWRNNVSFA-TSSTDNMIYVCKIG 387 (564)
Q Consensus 311 ~~~~h~~~V~~l~~~~~~~~l~s-~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~ 387 (564)
.+.+-...+.+++|+|+++.|++ ...++.|...|+. ++..+.+.... ...-.+.+..+..|+ +.-.++.++++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 35566678999999998776654 6678889999987 77777765432 345566776666664 44567788888876
Q ss_pred CCcee---eEec------CCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC---Ceeeeecc-------cccccEEEEE
Q 008467 388 ENRPI---KTFA------GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ---DKYVHDLR-------EHSKEIYTIR 448 (564)
Q Consensus 388 ~~~~~---~~~~------~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~---~~~~~~~~-------~~~~~i~~i~ 448 (564)
....+ .... ..+.....++|+|.++.|.++.+.....||.++. ...+..+. .+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 54421 2221 1234578999999997777777655555655431 11111110 1223456777
Q ss_pred EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC---------CCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008467 449 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR---------EPVYSLAFSPTGEYLASGSLDKSMHIW 519 (564)
Q Consensus 449 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~---------~~i~~~~~spdg~~lasgs~dg~i~iw 519 (564)
+.|... .+++.......+.++|.. |+.+..+.-.. .....|+|.|+|+.+++ +..+.++.|
T Consensus 180 ~dp~tg--------~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 180 FNQQKN--------TLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp EETTTT--------EEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred EcCCCC--------eEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 777532 456667778899999976 66555443211 24688999999985555 777777777
Q ss_pred eCC
Q 008467 520 SLK 522 (564)
Q Consensus 520 ~~~ 522 (564)
...
T Consensus 250 ~~~ 252 (255)
T 3qqz_A 250 TPQ 252 (255)
T ss_dssp EC-
T ss_pred Eec
Confidence 643
No 274
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.29 E-value=0.0026 Score=63.35 Aligned_cols=227 Identities=11% Similarity=0.068 Sum_probs=140.6
Q ss_pred CCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEe-eCCCcEEEEECCCc----ceeEEEe--ecccCeEEEEcCC
Q 008467 296 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTE----EWKQQFE--FHSGPTLDVDWRN 368 (564)
Q Consensus 296 dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~~v~iwd~~~~----~~~~~~~--~~~~~~~~~~~~~ 368 (564)
...|+..+..+.....+......+.+|+|++.+..|+-. ...+.|..+++... .....+. .....-+.++|..
T Consensus 91 ~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~ 170 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 170 (400)
T ss_dssp TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTT
T ss_pred cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecC
Confidence 467888887766444444455678899999876666554 45678888888652 1222222 1122346788888
Q ss_pred CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe-C-CCcEEEEeCCCCeeeeecccccccEEE
Q 008467 369 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-D-DVTAKIWNMKQDKYVHDLREHSKEIYT 446 (564)
Q Consensus 369 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s-~-dg~i~iwd~~~~~~~~~~~~~~~~i~~ 446 (564)
...+++-...+.|.+.+.........+...-.....|+++|.+..|+... . .+.|...++........+...-.....
T Consensus 171 ~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~g 250 (400)
T 3p5b_L 171 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG 250 (400)
T ss_dssp TEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEE
T ss_pred CceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEE
Confidence 88888888888999988876554444443445578999999766555443 2 367888887754433222222245578
Q ss_pred EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 008467 447 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 524 (564)
Q Consensus 447 i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~ 524 (564)
|+++|.+. .+..+-+..+.|..+|+........+.. .......|++. .+..+.+-...+.|..++..+|
T Consensus 251 lavd~~~~--------~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 251 ITLDLLSG--------RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp EEEETTTT--------EEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred EEEEeCCC--------EEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence 88887653 2444445678899999864322222222 22345677773 3345555566788999998777
Q ss_pred eEEEEEe
Q 008467 525 KIVKTYT 531 (564)
Q Consensus 525 ~~~~~~~ 531 (564)
+.+..+.
T Consensus 322 ~~~~~i~ 328 (400)
T 3p5b_L 322 SDVNLLA 328 (400)
T ss_dssp CCCEEEE
T ss_pred CceEEEe
Confidence 6555543
No 275
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.26 E-value=0.00035 Score=70.46 Aligned_cols=235 Identities=12% Similarity=0.140 Sum_probs=140.3
Q ss_pred CeEEEEECCC--CCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCC----c-EEEEECCCcc
Q 008467 277 DVTTLDWNGE--GTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK----T-AIVWDVKTEE 349 (564)
Q Consensus 277 ~V~~l~~s~~--g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~----~-v~iwd~~~~~ 349 (564)
....++|+|+ +..|..+...+.|+.++........+........+++|+++|+ |+.+...+ . +...+.. +.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~-~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA-SG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG-GT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC-CC
Confidence 4568899984 3334444444899999985544444444455678999999999 44444322 1 1111111 10
Q ss_pred eeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEEEeCCCcEEEEeC
Q 008467 350 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNM 428 (564)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las~s~dg~i~iwd~ 428 (564)
+.. . ..+. .-.....++++| ++.++++-..++.|+.++.
T Consensus 218 ~~~------------------------------------~---~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~ 257 (433)
T 4hw6_A 218 FTE------------------------------------R---LSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDP 257 (433)
T ss_dssp TCC------------------------------------E---EEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECT
T ss_pred eec------------------------------------c---cccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEEC
Confidence 000 0 0000 112344678888 6777766667888999988
Q ss_pred CCCeeeeeccc--ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC--CCeE--EEEEeCC-----------
Q 008467 429 KQDKYVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE--LGKL--LYSLNGH----------- 491 (564)
Q Consensus 429 ~~~~~~~~~~~--~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~--~~~~--~~~~~~h----------- 491 (564)
.++.....+.. ....-..++|+|++. .+.++-...+.|+.++.. ++.. ...+.+.
T Consensus 258 ~~g~~~~~~~~~~~~~~~~~ia~dpdG~--------~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~ 329 (433)
T 4hw6_A 258 ATGTLTEEEVMMDTKGSNFHIVWHPTGD--------WAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMG 329 (433)
T ss_dssp TTCCEEEEEEECSCCSSCEEEEECTTSS--------EEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEG
T ss_pred CCCeEEEEEeccCCCCCcccEEEeCCCC--------EEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcc
Confidence 76654222211 112234688888764 345555667889998765 2321 1122111
Q ss_pred ----CCCEEEEEE---------cCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-------------------CCEEEE
Q 008467 492 ----REPVYSLAF---------SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-------------------GGIFEV 539 (564)
Q Consensus 492 ----~~~i~~~~~---------spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~-------------------~~i~~~ 539 (564)
-.....+++ .++|.++++-...++|+.++. +|.+. ++.+. .....|
T Consensus 330 ~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~gi 407 (433)
T 4hw6_A 330 TGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSI 407 (433)
T ss_dssp GGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEE
T ss_pred cceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEE
Confidence 123577999 788888887777889999985 56543 33221 126789
Q ss_pred EEc-cCCCEEEEEEcCCcEEEEEee
Q 008467 540 CWN-KEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 540 ~w~-~~g~~la~~~~~~~v~v~~~~ 563 (564)
+++ ++|+.+++=..+.+|+.++..
T Consensus 408 avd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 408 AYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEECCCCEEEEEeCCCCEEEEEecC
Confidence 999 677777777788899988764
No 276
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.25 E-value=0.0018 Score=62.25 Aligned_cols=226 Identities=9% Similarity=0.018 Sum_probs=137.2
Q ss_pred CCeEEEEECCCce--eEeecCCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCcceeE-EE--eecccCeEEEEcCCC
Q 008467 296 DGQARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQ-QF--EFHSGPTLDVDWRNN 369 (564)
Q Consensus 296 dg~i~vw~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~-~~--~~~~~~~~~~~~~~~ 369 (564)
...|+..+.++.. ...+......+.++.|++.+..|+ +-...+.|..+++....... .+ ......-+.++|...
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 4578888877642 111211223467899998665554 54566789999987653221 11 122333577888888
Q ss_pred ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe--CCCcEEEEeCCCCeeeeecccccccEEEE
Q 008467 370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIWNMKQDKYVHDLREHSKEIYTI 447 (564)
Q Consensus 370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s--~dg~i~iwd~~~~~~~~~~~~~~~~i~~i 447 (564)
..+.+-...+.|.+++.........+.........++++|.+..|+.+. ..+.|...++........+...-..-..+
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngl 171 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 171 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEE
Confidence 8888888888999999876543333334445678999998766555544 25778888776433222122222345788
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 008467 448 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV 527 (564)
Q Consensus 448 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~ 527 (564)
+++|.+. .+..+-+..+.|..+|+........+.+.......+++.. +..+.+-...+.|..++..+|+..
T Consensus 172 avd~~~~--------~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 172 TLDYEEQ--------KLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp EEETTTT--------EEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEeccCC--------EEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCce
Confidence 8988543 2444556678899999863222212222334467788753 344455556788999998777654
Q ss_pred EEE
Q 008467 528 KTY 530 (564)
Q Consensus 528 ~~~ 530 (564)
..+
T Consensus 243 ~~i 245 (318)
T 3sov_A 243 REI 245 (318)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 277
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.21 E-value=0.0044 Score=59.48 Aligned_cols=213 Identities=13% Similarity=0.047 Sum_probs=126.8
Q ss_pred CCcEEEEECCCcceeEEEeecccCeEEEEcC--CCceEEEEeCCCeEEEEEcCC----CceeeEecCCCcceEEEEECCC
Q 008467 337 DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGE----NRPIKTFAGHQGEVNCVKWDPT 410 (564)
Q Consensus 337 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~----~~~~~~~~~h~~~i~~v~~~~~ 410 (564)
...|+..|+.+......+. .......+.|. .+..|.+....+.|+.++... ......+...-.....+++++.
T Consensus 9 ~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence 3568888888776554332 22334555554 456777777788999988765 2222223222234578899875
Q ss_pred C-CEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-CeEEEEeCCCCeEEEEE
Q 008467 411 G-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVELGKLLYSL 488 (564)
Q Consensus 411 ~-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~ 488 (564)
+ +++++-...+.|.+.++........+.........++..|.+. .++.+.... +.|...++. |+....+
T Consensus 88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g--------~ly~~d~~~~~~I~~~~~d-G~~~~~~ 158 (316)
T 1ijq_A 88 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG--------FMYWTDWGTPAKIKKGGLN-GVDIYSL 158 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT--------EEEEEECSSSCEEEEEETT-SCCEEEE
T ss_pred CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCC--------EEEEEccCCCCeEEEEcCC-CCCeEEE
Confidence 4 5556666788999999875543222222234557888887543 233443333 688888876 4333333
Q ss_pred -eCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEE-ec---CCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 489 -NGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGKIVKTY-TG---NGGIFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 489 -~~h~~~i~~~~~spdg~~lasgs-~dg~i~iw~~~~~~~~~~~-~~---~~~i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
...-...+.|+++|++..|..+. ..+.|..+++.... ...+ .. -.....+++. .+..+.+-..++.|..+|
T Consensus 159 ~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~ 235 (316)
T 1ijq_A 159 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSAN 235 (316)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEe
Confidence 22234578999999877665554 56789999987433 2333 21 2346788885 355555666677777776
No 278
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.19 E-value=0.00015 Score=77.66 Aligned_cols=263 Identities=10% Similarity=0.029 Sum_probs=144.1
Q ss_pred EEEECC-CCCEEEEEeCCC-----------eEEEEECCCcee---Eee-cCCCCCEEEEEeCCCCCEEEEeeC-CCcEEE
Q 008467 280 TLDWNG-EGTLLATGSYDG-----------QARIWSTNGDLK---CTL-SKHKGPIFSLKWNKKGDYLLTGSC-DKTAIV 342 (564)
Q Consensus 280 ~l~~s~-~g~~l~sg~~dg-----------~i~vw~~~~~~~---~~~-~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~i 342 (564)
.+++.+ +|++++.|+.+. .+.+||...... ..+ ..+..-..++++..++..++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 455666 889999988653 578888654321 112 122223335677788999888884 468999
Q ss_pred EECCCcceeEEEeecccCe-EEEEcC-CCceEEEEe-CC-----CeEEEEEcCCCceeeE-------ecCCCcceEEEEE
Q 008467 343 WDVKTEEWKQQFEFHSGPT-LDVDWR-NNVSFATSS-TD-----NMIYVCKIGENRPIKT-------FAGHQGEVNCVKW 407 (564)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~-~d-----~~i~~~~~~~~~~~~~-------~~~h~~~i~~v~~ 407 (564)
||+.+.+|...-....... ...... ++..++.++ .+ ..+.+||..++.-... +..... ...+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~---~~~~ 346 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK---QGLY 346 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT---TGGG
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc---ccee
Confidence 9999988776433322211 222233 666777776 33 4678888766532111 000000 0112
Q ss_pred CCCCCEEEEEeCCC---------cEEEEeCCCCeeeeecccccc---------cEEEEEEccCCCCCCCCCCcEEEEEEe
Q 008467 408 DPTGSLLASCSDDV---------TAKIWNMKQDKYVHDLREHSK---------EIYTIRWSPTGSGTNNPNQQLILASAS 469 (564)
Q Consensus 408 ~~~~~~las~s~dg---------~i~iwd~~~~~~~~~~~~~~~---------~i~~i~~~p~~~~~~~~~~~~~l~s~s 469 (564)
..++.+++.|+.+| .+..||..+.........+.. .-.++.+...+ . .+++.|+
T Consensus 347 ~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~-------~-~i~v~GG 418 (656)
T 1k3i_A 347 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVK-------G-KILTFGG 418 (656)
T ss_dssp TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTT-------T-EEEEECC
T ss_pred ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCC-------C-eEEEEeC
Confidence 23455555555444 467788776653322211110 11333332211 1 3556666
Q ss_pred CCC-----------eEEEEeCCCCeEEEEE--eCCCCC-EEEEEEcCCCCEEEEEeCC-----------CcEEEEeCCCC
Q 008467 470 FDS-----------TVKLWDVELGKLLYSL--NGHREP-VYSLAFSPTGEYLASGSLD-----------KSMHIWSLKEG 524 (564)
Q Consensus 470 ~dg-----------~i~iwd~~~~~~~~~~--~~h~~~-i~~~~~spdg~~lasgs~d-----------g~i~iw~~~~~ 524 (564)
.++ .|.+||..+..-.... ...... -.+++..|+|++++.||.+ ..+.+||..+.
T Consensus 419 ~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 419 SPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD 498 (656)
T ss_dssp BSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred CCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence 432 6888888766543222 111111 2345677899999999864 46899998776
Q ss_pred eEEEEEecC---CCEEEEEEccCCCEEEEEEc
Q 008467 525 KIVKTYTGN---GGIFEVCWNKEGDKIAACFA 553 (564)
Q Consensus 525 ~~~~~~~~~---~~i~~~~w~~~g~~la~~~~ 553 (564)
+-...-... .........++|+.+++|+.
T Consensus 499 ~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 499 TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred ceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 532211111 11223456799999999874
No 279
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.18 E-value=0.0057 Score=59.04 Aligned_cols=270 Identities=9% Similarity=0.030 Sum_probs=143.4
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467 217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 296 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 296 (564)
..+.++.|.+.+..++. +.+|.|.. ..++..... ............+.++.+++ +..++ ++..
T Consensus 36 ~~~~~v~~~~~~~~~~~-G~~g~i~~--s~DgG~tW~------------~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~ 98 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLV-GVNATLME--TRDGGQTWE------------PRTLVLDHSDYRFNSVSFQG-NEGWI-VGEP 98 (327)
T ss_dssp SCEEEEEESSSSCEEEE-ETTTEEEE--ESSTTSSCE------------ECCCCCSCCCCEEEEEEEET-TEEEE-EEET
T ss_pred CcEEEEEECCCCcEEEE-cCCCeEEE--eCCCCCCCe------------ECCCCCCCCCccEEEEEecC-CeEEE-EECC
Confidence 46889999888887774 56776532 222211000 00000011234578888876 45444 4556
Q ss_pred CeEEEEECC-CceeEeec---CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceE
Q 008467 297 GQARIWSTN-GDLKCTLS---KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF 372 (564)
Q Consensus 297 g~i~vw~~~-~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (564)
|.|.. ..+ |..-.... .+.+.+..+.+.+++..++++ .++.|..-+-....+..........+..+.+.++..+
T Consensus 99 g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~ 176 (327)
T 2xbg_A 99 PIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEY 176 (327)
T ss_dssp TEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCE
T ss_pred CeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcE
Confidence 65544 333 33222221 244567888877776655554 4555433211223344433333345666666655556
Q ss_pred EEEeCCCeEEEEEcCCC---ceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecc----cccccEE
Q 008467 373 ATSSTDNMIYVCKIGEN---RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR----EHSKEIY 445 (564)
Q Consensus 373 ~~~~~d~~i~~~~~~~~---~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~----~~~~~i~ 445 (564)
+..+.++.++.-.-..+ .++ -.+....+..+.+.+++.+++ ++.+|.+.+++...++.-..+. .+...++
T Consensus 177 ~~~g~~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~ 253 (327)
T 2xbg_A 177 VAVSSRGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFL 253 (327)
T ss_dssp EEEETTSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEE
T ss_pred EEEECCCcEEEEeCCCCCceeEC--CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceE
Confidence 55666666655432211 222 123455788899999988664 5567887776432222211121 1223578
Q ss_pred EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467 446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN---GHREPVYSLAFSPTGEYLASGSLDKSMHIWS 520 (564)
Q Consensus 446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~i~~~~~spdg~~lasgs~dg~i~iw~ 520 (564)
.+.+.|.+. ++++ +.+|.| ++..+.|+.-..+. .....++++.|.+++. +++++.+|.|.-++
T Consensus 254 ~v~~~~~~~---------~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 254 DLAYRTPNE---------VWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp EEEESSSSC---------EEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred EEEecCCCE---------EEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 888877542 4444 457777 44555454333333 1235678899986555 55566788776665
No 280
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.18 E-value=0.0018 Score=61.97 Aligned_cols=213 Identities=12% Similarity=0.107 Sum_probs=124.2
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467 217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 296 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 296 (564)
.....++|+|+++++++-..++.|..|+..... ...... ......+++.++|+++++....
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~------------~~~~~~-------~~~p~gia~~~dG~l~vad~~~ 92 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ------------QIHATV-------EGKVSGLAFTSNGDLVATGWNA 92 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE------------EEEEEC-------SSEEEEEEECTTSCEEEEEECT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce------------EEEEeC-------CCCceeEEEcCCCcEEEEeccC
Confidence 346789999999988877788899888864321 001110 1347889999999976665443
Q ss_pred -C-eEEEEEC-CCceeEeec-CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE-Ee---------ecccCeE
Q 008467 297 -G-QARIWST-NGDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-FE---------FHSGPTL 362 (564)
Q Consensus 297 -g-~i~vw~~-~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~---------~~~~~~~ 362 (564)
+ .|..++. .+.+..... ........++..+.+..+++-..++.|.++|..++..... .. .......
T Consensus 93 ~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pn 172 (306)
T 2p4o_A 93 DSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN 172 (306)
T ss_dssp TSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred CcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCC
Confidence 2 3555554 444332221 1112234455455554455555688899999765421110 00 0001122
Q ss_pred EEEcCCCceEEEEeCCCeEEEEEcCC-Cce--eeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee--eeec
Q 008467 363 DVDWRNNVSFATSSTDNMIYVCKIGE-NRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDL 437 (564)
Q Consensus 363 ~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~--~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~--~~~~ 437 (564)
.+.......+++....+.|+++++.. +.. ...+.. ......++++++|+++++....+.|.+++.. ++. +..+
T Consensus 173 gis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~ 250 (306)
T 2p4o_A 173 GLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQA 250 (306)
T ss_dssp EEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECG
T ss_pred CcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeec
Confidence 33333445667777888999998864 221 122211 1235568899999988888888899999975 443 2233
Q ss_pred ccccccEEEEEEc
Q 008467 438 REHSKEIYTIRWS 450 (564)
Q Consensus 438 ~~~~~~i~~i~~~ 450 (564)
.......++++|.
T Consensus 251 ~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 251 EQGVIGSTAVAFG 263 (306)
T ss_dssp GGTCTTEEEEEEC
T ss_pred ccccCCceEEEEe
Confidence 3333457888887
No 281
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.16 E-value=0.0082 Score=63.34 Aligned_cols=327 Identities=9% Similarity=0.014 Sum_probs=171.1
Q ss_pred cceEEEEECCCCCEEEEE-ECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC-EEEEEe
Q 008467 217 SEVCACAWSPAGSLLASG-SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT-LLATGS 294 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasg-s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~l~sg~ 294 (564)
..+.+++|++.+..|+.. ...+.|..+++...... ...+ .........+++.+.+. +.++-.
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~---------~~v~-------~~~~~~P~GlAvD~~~~~ly~~d~ 103 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV---------QNVV-------VSGLLSPDGLACDWLGEKLYWTDS 103 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C---------EEEE-------CSSCSCEEEEEEETTTTEEEEEET
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce---------EEEE-------eCCCCCcCeEEEEecCCEEEEEeC
Confidence 457789999976655544 45677888876532100 0000 01123467888888554 555555
Q ss_pred CCCeEEEEECCCceeEeec-CCCCCEEEEEeCCCCCEEEEeeC--CCcEEEEECCCcceeEEEeec--ccCeEEEEcCCC
Q 008467 295 YDGQARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFH--SGPTLDVDWRNN 369 (564)
Q Consensus 295 ~dg~i~vw~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~ 369 (564)
..+.|.+.+.+|.....+. ..-....+|++.|.+.+|+.... .+.|...++............ ...-+.++....
T Consensus 104 ~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~ 183 (619)
T 3s94_A 104 ETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQ 183 (619)
T ss_dssp TTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTT
T ss_pred CCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCC
Confidence 6789999999887654443 33344567889887666665553 345665665543322222111 112344555556
Q ss_pred ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccccccc------
Q 008467 370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE------ 443 (564)
Q Consensus 370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~------ 443 (564)
..+++-...+.|+.+++..........+.......+++..+ .++++-...+.|...|..+++....+......
T Consensus 184 ~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v 262 (619)
T 3s94_A 184 KLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHA 262 (619)
T ss_dssp EEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEE
T ss_pred EEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEE
Confidence 66677667777888877654433222222223346677655 55555556778888887665432222110000
Q ss_pred -------------------E--EEE---------EEccCCC-------CCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE-
Q 008467 444 -------------------I--YTI---------RWSPTGS-------GTNNPNQQLILASASFDSTVKLWDVELGKLL- 485 (564)
Q Consensus 444 -------------------i--~~i---------~~~p~~~-------~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~- 485 (564)
+ .|+ +..|.|. ....... .+|+.+. .+.|+..++......
T Consensus 263 ~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~-~~Ll~~~-~~~i~~i~l~~~~~~~ 340 (619)
T 3s94_A 263 FSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGAT-ELLLLAR-RTDLRRISLDTPDFTD 340 (619)
T ss_dssp CCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCS-EEEEEEE-SSCEEEEESSSTTCCC
T ss_pred EccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCc-eEEEEEc-ccceEEEecCCCccce
Confidence 0 111 1112221 0111112 2333333 356777777654211
Q ss_pred EEEe-CCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEEEEec-CCCEEEEEEccCCCEEEEE-EcCCcEEEEE
Q 008467 486 YSLN-GHREPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAAC-FANHTVCVLD 561 (564)
Q Consensus 486 ~~~~-~h~~~i~~~~~spdg~~lasg-s~dg~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~g~~la~~-~~~~~v~v~~ 561 (564)
..+. ..-..+..|+|.+.+..|..+ ...+.|+.++............ -..+..++++..+..|..+ ...+.|.+.+
T Consensus 341 ~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~ 420 (619)
T 3s94_A 341 IVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTR 420 (619)
T ss_dssp EECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEe
Confidence 1111 112356889999865555544 4578899998875443333322 2356788888765555444 4566777766
Q ss_pred e
Q 008467 562 F 562 (564)
Q Consensus 562 ~ 562 (564)
+
T Consensus 421 ~ 421 (619)
T 3s94_A 421 L 421 (619)
T ss_dssp T
T ss_pred C
Confidence 4
No 282
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.09 E-value=0.0048 Score=60.16 Aligned_cols=214 Identities=9% Similarity=-0.013 Sum_probs=126.2
Q ss_pred CCcEEEEECCCcceeEEEeecccCeEEEEc--CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCC-CE
Q 008467 337 DKTAIVWDVKTEEWKQQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SL 413 (564)
Q Consensus 337 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~ 413 (564)
...|+..++.......... .......++| ..+..|.+-...+.|+.++.........+.........+++++.+ .+
T Consensus 52 ~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~l 130 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL 130 (349)
T ss_dssp BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE
T ss_pred ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeE
Confidence 3457777776554433222 2223445555 455667777778888888887655433333333445688898754 55
Q ss_pred EEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-CeEEEEeCCCCeEEEEE-eCC
Q 008467 414 LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVELGKLLYSL-NGH 491 (564)
Q Consensus 414 las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~-~~h 491 (564)
+++-...+.|.+.++........+.........+++.|.+. .+..+-... +.|..+++.. .....+ ...
T Consensus 131 y~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g--------~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~ 201 (349)
T 3v64_C 131 YWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG--------TIYWTDWGNTPRIEASSMDG-SGRRIIADTH 201 (349)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTT--------EEEEEECSSSCEEEEEETTS-CSCEESCCSS
T ss_pred EEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcC--------eEEEeccCCCCEEEEEeCCC-CCcEEEEECC
Confidence 56666678899999876543322322334457888887543 244454444 7888888763 322222 222
Q ss_pred CCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEEEEec-CCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 492 REPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 492 ~~~i~~~~~spdg~~lasg-s~dg~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
....+.|+|+|++..|..+ +..+.|..+++........... ......++. .++....+-..++.|..+|
T Consensus 202 ~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 202 LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEE
Confidence 3456899999877666554 4567899999864432222222 234677777 3444555555666776665
No 283
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.06 E-value=0.0031 Score=62.50 Aligned_cols=221 Identities=10% Similarity=0.002 Sum_probs=130.4
Q ss_pred EEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc--CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEE
Q 008467 330 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW 407 (564)
Q Consensus 330 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~ 407 (564)
+|+.+ ....|+..++.......... .......+.| ..+..|.+-...+.|+.++.........+.........+++
T Consensus 89 ~l~~~-~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glav 166 (386)
T 3v65_B 89 VLLFA-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAV 166 (386)
T ss_dssp EEEEE-CBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEE
T ss_pred eeEee-cCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEE
Confidence 44433 33568888887665443332 2223445555 45566777777888998888765543333333334567888
Q ss_pred CCCC-CEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-CeEEEEeCCCCeEE
Q 008467 408 DPTG-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVELGKLL 485 (564)
Q Consensus 408 ~~~~-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~ 485 (564)
++.+ .++++-...+.|.+.++........+.........+++.|.+. .+..+-... +.|..+++......
T Consensus 167 d~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g--------~ly~td~~~~~~I~r~~~dG~~~~ 238 (386)
T 3v65_B 167 DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG--------TIYWTDWGNTPRIEASSMDGSGRR 238 (386)
T ss_dssp ETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTT--------EEEEEECSSSCEEEEEETTSCSCE
T ss_pred EeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCC--------eEEEeccCCCCEEEEEeCCCCCcE
Confidence 8754 4556666677888888765443322322334457788877543 244444444 77888887633222
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEEEEe-cCCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 486 YSLNGHREPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 486 ~~~~~h~~~i~~~~~spdg~~lasg-s~dg~i~iw~~~~~~~~~~~~-~~~~i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
..........+.|+|+|++..|..+ +..+.|..+++.......... +......++. ..+..+.+-..++.|..+|
T Consensus 239 ~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 239 IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEE
Confidence 2222233456899999877666554 456789999986443322222 2334677888 4455555556677777766
No 284
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.00 E-value=0.013 Score=58.33 Aligned_cols=221 Identities=10% Similarity=0.019 Sum_probs=128.9
Q ss_pred EEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc--CCCceEEEEeCCCeEEEEEcCCC----ceeeEecCCCcceE
Q 008467 330 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGEN----RPIKTFAGHQGEVN 403 (564)
Q Consensus 330 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~----~~~~~~~~h~~~i~ 403 (564)
+|+.+ ....|+..++.......... ....+..++| ..+..|.+-...+.|+.+++... .....+........
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEe-ccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 34433 34678888887665444332 2233445555 45667777777888888887652 22233333344677
Q ss_pred EEEECC-CCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEE-eCCCeEEEEeCCC
Q 008467 404 CVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA-SFDSTVKLWDVEL 481 (564)
Q Consensus 404 ~v~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~ 481 (564)
.+++++ .++++++-...+.|.+.++........+.........|+..|.+. .++.+- +..+.|...++..
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g--------~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG--------FMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTT--------EEEEEECSSSCCEEEEETTS
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccC--------eEEEEeCCCCCEEEEEeCCC
Confidence 899987 455566666788999999876544333333334467888887542 233333 2246788888763
Q ss_pred CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEec---CCCEEEEEEccCCCEEEEEEcCCcE
Q 008467 482 GKLLYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGKIVKTYTG---NGGIFEVCWNKEGDKIAACFANHTV 557 (564)
Q Consensus 482 ~~~~~~~~~h~~~i~~~~~spdg~~lasgs-~dg~i~iw~~~~~~~~~~~~~---~~~i~~~~w~~~g~~la~~~~~~~v 557 (564)
......+...-...+.|+++|++..|..+. ..+.|..+++........... -.....|+.. .+..+.+-..++.|
T Consensus 235 ~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 235 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence 322222233334578999999887776654 467899999865433222222 1235677762 33444455566677
Q ss_pred EEEE
Q 008467 558 CVLD 561 (564)
Q Consensus 558 ~v~~ 561 (564)
..+|
T Consensus 314 ~~~~ 317 (400)
T 3p5b_L 314 FSAN 317 (400)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6665
No 285
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.99 E-value=0.0083 Score=64.93 Aligned_cols=226 Identities=12% Similarity=0.075 Sum_probs=136.4
Q ss_pred CCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCc----ceeEEEe--ecccCeEEEEcCC
Q 008467 296 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTE----EWKQQFE--FHSGPTLDVDWRN 368 (564)
Q Consensus 296 dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~----~~~~~~~--~~~~~~~~~~~~~ 368 (564)
...|+..+..+.....+......+.+|+|++.+..|+ +-...+.|+.+++... .....+. .....-+.++|..
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~ 482 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 482 (791)
T ss_dssp BSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred ccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecC
Confidence 3567777776544444444456678999998665554 5455678888888653 2222222 2233467889999
Q ss_pred CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe-CC-CcEEEEeCCCCeeeeecccccccEEE
Q 008467 369 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DD-VTAKIWNMKQDKYVHDLREHSKEIYT 446 (564)
Q Consensus 369 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s-~d-g~i~iwd~~~~~~~~~~~~~~~~i~~ 446 (564)
...|++-...+.|.+.++........+...-.....|+++|.+..|+... .. +.|...++........+...-.....
T Consensus 483 ~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~G 562 (791)
T 3m0c_C 483 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG 562 (791)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEE
T ss_pred CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceE
Confidence 88899988899999999876554333334445688999999765555443 23 67888888755443333333345677
Q ss_pred EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 008467 447 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 524 (564)
Q Consensus 447 i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~ 524 (564)
|++.+... .+..+-...+.|...++........+.. .......|++..+ .++++-...+.|...+..+|
T Consensus 563 LavD~~~~--------~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 563 ITLDLLSG--------RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp EEEETTTT--------EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTC
T ss_pred EEEecCCC--------eEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCC
Confidence 88876543 2334445567899998864332222222 2223456776432 33444445678888887777
Q ss_pred eEEEEE
Q 008467 525 KIVKTY 530 (564)
Q Consensus 525 ~~~~~~ 530 (564)
+.+..+
T Consensus 634 ~~~~~l 639 (791)
T 3m0c_C 634 SDVNLL 639 (791)
T ss_dssp CCCEEE
T ss_pred cceEEe
Confidence 654444
No 286
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.93 E-value=0.011 Score=59.99 Aligned_cols=240 Identities=13% Similarity=0.150 Sum_probs=139.5
Q ss_pred CeEEEEECCC--CCEEEEEeCCCeEEEEECCCceeEeecCC----CCCEEEEEe-------CCCCCEEEEeeCCC-c---
Q 008467 277 DVTTLDWNGE--GTLLATGSYDGQARIWSTNGDLKCTLSKH----KGPIFSLKW-------NKKGDYLLTGSCDK-T--- 339 (564)
Q Consensus 277 ~V~~l~~s~~--g~~l~sg~~dg~i~vw~~~~~~~~~~~~h----~~~V~~l~~-------~~~~~~l~s~s~D~-~--- 339 (564)
....|+|+|. ++++++-...+.|++.|..+..+..+..- ......|+| +++|.+|+.+...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4678999983 45555555457788888877655544322 224789999 99999777665543 2
Q ss_pred ---EEEEECCC-cceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEE
Q 008467 340 ---AIVWDVKT-EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLL 414 (564)
Q Consensus 340 ---v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~l 414 (564)
|.+.+... +.+.. ..+ + ..+..+. ....++++| ++.++
T Consensus 220 ~~~V~~i~r~~~G~~~~--------------~~~---------~----------~~v~~~~----~p~giavdp~~g~LY 262 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDD--------------RSD---------I----------QLIAAYK----QCNGATIHPINGELY 262 (496)
T ss_dssp EEEEEEEECCTTSCCST--------------TSC---------E----------EEEEEES----CCCCEEECTTTCCEE
T ss_pred CceEEEEecCCCCceee--------------ccc---------c----------eeeccCC----CceEEEEcCCCCeEE
Confidence 33443221 11100 000 0 0011111 234677899 45666
Q ss_pred EEEeCCCcEEEEeCC-------CCee-----------eeec-c-cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeE
Q 008467 415 ASCSDDVTAKIWNMK-------QDKY-----------VHDL-R-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV 474 (564)
Q Consensus 415 as~s~dg~i~iwd~~-------~~~~-----------~~~~-~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i 474 (564)
++-..++.|..+|+. ++.. ...+ . .....-+.++|+|++. .+.++-+....|
T Consensus 263 vtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~--------~lYvaD~~~h~I 334 (496)
T 3kya_A 263 FNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGK--------YAYFGVINNHYF 334 (496)
T ss_dssp EEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSS--------EEEEEETTTTEE
T ss_pred EEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCC--------EEEEEeCCCCEE
Confidence 677778889999986 4432 1111 1 1123357899999874 234455667788
Q ss_pred EEEeC--CCCeE--EEEEeCC------C---------CCEE-EEEEc-------CCCCEEEEEeCCCcEEEEeCCCCeEE
Q 008467 475 KLWDV--ELGKL--LYSLNGH------R---------EPVY-SLAFS-------PTGEYLASGSLDKSMHIWSLKEGKIV 527 (564)
Q Consensus 475 ~iwd~--~~~~~--~~~~~~h------~---------~~i~-~~~~s-------pdg~~lasgs~dg~i~iw~~~~~~~~ 527 (564)
+.++. ..+.. ...+-+. . .... .++.. ++|.++++=....+|+.++ .+|. +
T Consensus 335 ~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v 412 (496)
T 3kya_A 335 MRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-V 412 (496)
T ss_dssp EEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-E
T ss_pred EEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-E
Confidence 88654 33332 0122111 0 1234 45554 5677777777788999998 5664 4
Q ss_pred EEEecC-------------------------CCEEEEEEccC-CCEEEEEEcCCcEEEEEee
Q 008467 528 KTYTGN-------------------------GGIFEVCWNKE-GDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 528 ~~~~~~-------------------------~~i~~~~w~~~-g~~la~~~~~~~v~v~~~~ 563 (564)
.++.+. .....|+++++ |+..++=..+.+|+.+++.
T Consensus 413 ~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~ 474 (496)
T 3kya_A 413 STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISME 474 (496)
T ss_dssp EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECC
Confidence 444332 12568999997 7777777788899988764
No 287
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.87 E-value=0.0083 Score=57.43 Aligned_cols=192 Identities=17% Similarity=0.258 Sum_probs=120.0
Q ss_pred CCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCc---------eEEEEeC--CCeEEEEEcC-CCceeeE
Q 008467 327 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV---------SFATSST--DNMIYVCKIG-ENRPIKT 394 (564)
Q Consensus 327 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~--d~~i~~~~~~-~~~~~~~ 394 (564)
....++.....+-+.+||+ .++.++.+.. +....++.+++. .+++.-. +++|.++++. ...++..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 4456777777888999999 7777776643 334444433322 2445555 6899999885 2234444
Q ss_pred ecC------CC-cceEEEEE--CCC-CC-EEEEEeCCCcEEEEeCC-------CCeeeeecccccccEEEEEEccCCCCC
Q 008467 395 FAG------HQ-GEVNCVKW--DPT-GS-LLASCSDDVTAKIWNMK-------QDKYVHDLREHSKEIYTIRWSPTGSGT 456 (564)
Q Consensus 395 ~~~------h~-~~i~~v~~--~~~-~~-~las~s~dg~i~iwd~~-------~~~~~~~~~~~~~~i~~i~~~p~~~~~ 456 (564)
+.. .. ..+..+++ +|. ++ +++....+|.+..|++. +.+.+++|... ..+-.+...+...
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g-- 192 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYG-- 192 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTT--
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCC--
Confidence 421 11 34555666 774 44 57778888999999872 33455666543 3455555555432
Q ss_pred CCCCCcEEEEEEeCCCeEEEEeCC-----CCeEEEEEe-CC-CCCEEEEEE--cCCCC-EEEEEe-CCCcEEEEeCC-CC
Q 008467 457 NNPNQQLILASASFDSTVKLWDVE-----LGKLLYSLN-GH-REPVYSLAF--SPTGE-YLASGS-LDKSMHIWSLK-EG 524 (564)
Q Consensus 457 ~~~~~~~~l~s~s~dg~i~iwd~~-----~~~~~~~~~-~h-~~~i~~~~~--spdg~-~lasgs-~dg~i~iw~~~-~~ 524 (564)
.|..+-.+.-|..++.+ +++.+..+. ++ ...+..|++ .++|+ ||++.+ .+.++.+|+.. +.
T Consensus 193 -------~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~ 265 (355)
T 3amr_A 193 -------RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKN 265 (355)
T ss_dssp -------EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTC
T ss_pred -------eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCC
Confidence 56778888666666654 345665542 22 236788877 56666 555555 67899999997 77
Q ss_pred eEEEEEe
Q 008467 525 KIVKTYT 531 (564)
Q Consensus 525 ~~~~~~~ 531 (564)
+.+..|.
T Consensus 266 ~~vg~f~ 272 (355)
T 3amr_A 266 KYVADFR 272 (355)
T ss_dssp CEEEEEE
T ss_pred cEEEEEE
Confidence 8888885
No 288
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.84 E-value=0.0054 Score=59.85 Aligned_cols=59 Identities=24% Similarity=0.307 Sum_probs=39.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe----E--EEEE-ecCCCEEEEEEccCCCEEEEEEc
Q 008467 494 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK----I--VKTY-TGNGGIFEVCWNKEGDKIAACFA 553 (564)
Q Consensus 494 ~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~----~--~~~~-~~~~~i~~~~w~~~g~~la~~~~ 553 (564)
....++| .+|.++++.-..+.|...++.... . ...+ .....+.++++.|||...++...
T Consensus 269 ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~~ 334 (352)
T 2ism_A 269 PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTSN 334 (352)
T ss_dssp CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEECS
T ss_pred CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEeC
Confidence 4567788 567777766666778777765432 1 1222 33457899999999987777643
No 289
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.84 E-value=0.0041 Score=59.52 Aligned_cols=182 Identities=14% Similarity=0.253 Sum_probs=118.7
Q ss_pred eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC----CC---E-EEEEeC--CCcEEEEeCC-CCeeeeeccc
Q 008467 371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT----GS---L-LASCSD--DVTAKIWNMK-QDKYVHDLRE 439 (564)
Q Consensus 371 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~----~~---~-las~s~--dg~i~iwd~~-~~~~~~~~~~ 439 (564)
.++.....+.++++++ .++.+..+.. +.++.+..-|. |+ + +++... +++|++|++. ....+..+..
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 3566667788999999 7777777653 56777766653 22 2 344444 6899999763 2223444421
Q ss_pred ------cc-ccEEEEEE--ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-------CCeEEEEEeCCCCCEEEEEEcCC
Q 008467 440 ------HS-KEIYTIRW--SPTGSGTNNPNQQLILASASFDSTVKLWDVE-------LGKLLYSLNGHREPVYSLAFSPT 503 (564)
Q Consensus 440 ------~~-~~i~~i~~--~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-------~~~~~~~~~~h~~~i~~~~~spd 503 (564)
.. ..++.++. +|.. ...+++....+|.+..|++. +.+.+.++.- ...+..++..+.
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~-------g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~ 190 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKT-------GKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDE 190 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTT-------CCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETT
T ss_pred cccCcCCCCCCeeEEEEEecCCC-------CcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCC
Confidence 11 44566666 4432 23467778888999999882 3355667664 356888999999
Q ss_pred CCEEEEEeCCCcEEEEeCC-----CCeEEEEEecC---CCEEEEEE--ccCCC-EEEEEE-cCCcEEEEEee
Q 008467 504 GEYLASGSLDKSMHIWSLK-----EGKIVKTYTGN---GGIFEVCW--NKEGD-KIAACF-ANHTVCVLDFR 563 (564)
Q Consensus 504 g~~lasgs~dg~i~iw~~~-----~~~~~~~~~~~---~~i~~~~w--~~~g~-~la~~~-~~~~v~v~~~~ 563 (564)
...|..+-.+.-|..++.+ +++++..+... ..+-.|+. .++|+ +|.+++ .+.+..|||.+
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9999999998767666754 35566555332 35677777 56666 555555 57789999863
No 290
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.81 E-value=0.02 Score=54.85 Aligned_cols=214 Identities=8% Similarity=0.012 Sum_probs=122.0
Q ss_pred CCcEEEEECCCcc--eeEEEeecccCeEEEEcC--CCceEEEEeCCCeEEEEEcCCCce-eeEecCCCcceEEEEECCC-
Q 008467 337 DKTAIVWDVKTEE--WKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDPT- 410 (564)
Q Consensus 337 D~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~h~~~i~~v~~~~~- 410 (564)
...|+..|+.... ....+. .......++|. .+..|.+-...+.|+.++...... ...+...-.....+++++.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 4678888887653 111111 12234455564 566777777788898888765532 1222222234667888874
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEE-eCCCeEEEEeCCCCeEEEEE-
Q 008467 411 GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA-SFDSTVKLWDVELGKLLYSL- 488 (564)
Q Consensus 411 ~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~- 488 (564)
+.++++-...+.|.++++........+.........++..|.+. .+..+- +..+.|...++. |.....+
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g--------~ly~td~~~~~~I~r~~~d-G~~~~~~~ 161 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSG--------FMYWTDWGEVPKIERAGMD-GSSRFIII 161 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGT--------EEEEEECSSSCEEEEEETT-SCSCEEEE
T ss_pred CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCC--------EEEEEecCCCCEEEEEEcC-CCCeEEEE
Confidence 45556666678999999875433222223334457788877532 233332 235778888876 3222222
Q ss_pred eCCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEEEEe-cCCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 489 NGHREPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 489 ~~h~~~i~~~~~spdg~~lasg-s~dg~i~iw~~~~~~~~~~~~-~~~~i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
...-...+.|+|+|++..|..+ +..+.|..+++.......... .......++... +..+.+-..++.|..+|
T Consensus 162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~ 235 (318)
T 3sov_A 162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACN 235 (318)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEE
Confidence 2223346899999977666555 456789999986433222222 223466777753 33444445566666665
No 291
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.78 E-value=0.0018 Score=61.37 Aligned_cols=157 Identities=13% Similarity=0.131 Sum_probs=105.9
Q ss_pred CCCcceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCeeeeecccc-------cccEEEEEE---ccCCCCCCCCCCcEEE
Q 008467 397 GHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKYVHDLREH-------SKEIYTIRW---SPTGSGTNNPNQQLIL 465 (564)
Q Consensus 397 ~h~~~i~~v~~~~~~~~las~s-~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~i~~---~p~~~~~~~~~~~~~l 465 (564)
+....-.+++|++....|..++ ..++|..|+...+......... ...+..|.| .|.+. ++
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~gr---------L~ 80 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKR---------LF 80 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCE---------EE
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCc---------EE
Confidence 3344456899988555555555 6999999998755433222111 113578888 46543 44
Q ss_pred EEEe-------------CCCeEEEEeCC---CCeEEEEEe--CC-----------CCCEEEEEEcCCCCEEEEEeCC-Cc
Q 008467 466 ASAS-------------FDSTVKLWDVE---LGKLLYSLN--GH-----------REPVYSLAFSPTGEYLASGSLD-KS 515 (564)
Q Consensus 466 ~s~s-------------~dg~i~iwd~~---~~~~~~~~~--~h-----------~~~i~~~~~spdg~~lasgs~d-g~ 515 (564)
++.. .+..|..+|+. +++.++... .. ......++..++|+..++++.- +.
T Consensus 81 vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~ 160 (334)
T 2p9w_A 81 AVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA 160 (334)
T ss_dssp EEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE
T ss_pred EEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe
Confidence 4333 26789999998 787766554 11 1247899999999999999988 88
Q ss_pred EEEEeCCCCeEEEEEe-c------CCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 516 MHIWSLKEGKIVKTYT-G------NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 516 i~iw~~~~~~~~~~~~-~------~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
|...+... +.+..+. . ..+.+.++++|+|+.|++....+.+..+|++
T Consensus 161 I~rV~pdG-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 161 IARVSADG-KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEEECTTS-CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred EEEEeCCC-CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 77777653 3333331 1 1236689999999999988779999988864
No 292
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.73 E-value=0.014 Score=53.69 Aligned_cols=190 Identities=11% Similarity=0.103 Sum_probs=115.9
Q ss_pred CeEEEEcC--CCceEEEEeCCCeEEEEEcCCCceeeEec-CCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee---
Q 008467 360 PTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--- 433 (564)
Q Consensus 360 ~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~--- 433 (564)
.+..+.|. .+..|++...++.|+..+.. ++.++.+. +-......|++.+++.++++.-.++.+.++++.....
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~ 106 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKI 106 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeee
Confidence 34555554 34566777778889999987 66665553 2225677889999988777665677888888765432
Q ss_pred eeecc------cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC-eEEEEeC-CCCeEEEEEe-------CCCCCEEEE
Q 008467 434 VHDLR------EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS-TVKLWDV-ELGKLLYSLN-------GHREPVYSL 498 (564)
Q Consensus 434 ~~~~~------~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg-~i~iwd~-~~~~~~~~~~-------~h~~~i~~~ 498 (564)
+.... ......-.++|.|.+. .++++.-.+. .|..|+- .....+..+. .+...+.++
T Consensus 107 ~~~~~~~~~~~~~N~g~EGLA~d~~~~--------~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 107 LKKIKIPLQESPTNCGFEGLAYSRQDH--------TFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp EEEEECCCSSCCCSSCCEEEEEETTTT--------EEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred eeeeccccccccccCCcceEEEeCCCC--------EEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 12111 1234457889988753 2333333333 4555551 1111111121 122346889
Q ss_pred EEcCC-CCEEEEEeCCCcEEEEeCCCCeEEEEEecC----------CCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467 499 AFSPT-GEYLASGSLDKSMHIWSLKEGKIVKTYTGN----------GGIFEVCWNKEGDKIAACFANHTVCVL 560 (564)
Q Consensus 499 ~~spd-g~~lasgs~dg~i~iw~~~~~~~~~~~~~~----------~~i~~~~w~~~g~~la~~~~~~~v~v~ 560 (564)
+|+|. |.+++.....+.|.++|.. |+++..+.-. ...-.|+++++|+..+++-.| .+.+|
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n-~~y~f 249 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPN-RFYRF 249 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTT-EEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCc-eEEEE
Confidence 99996 4566666777889999965 6666665432 245789999999977776444 44443
No 293
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.71 E-value=0.00027 Score=75.88 Aligned_cols=226 Identities=11% Similarity=0.071 Sum_probs=129.6
Q ss_pred CCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEee-CCCcEEEEECCC----cceeEEEe--ecccCeEEEEcCC
Q 008467 296 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKT----EEWKQQFE--FHSGPTLDVDWRN 368 (564)
Q Consensus 296 dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~~~----~~~~~~~~--~~~~~~~~~~~~~ 368 (564)
.+.|+..+..+.....+......+.+|+|++.+..|+.+. ..+.|..+++.+ ......+. .....-+.++|..
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~ 464 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 464 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence 3567777766544333333334556889998777766554 457899999875 22111111 1122345677777
Q ss_pred CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe-CC-CcEEEEeCCCCeeeeecccccccEEE
Q 008467 369 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DD-VTAKIWNMKQDKYVHDLREHSKEIYT 446 (564)
Q Consensus 369 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s-~d-g~i~iwd~~~~~~~~~~~~~~~~i~~ 446 (564)
...|++-...+.|.+++.........+.........++++|.+..|+... .. +.|..+++........+...-.....
T Consensus 465 g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnG 544 (699)
T 1n7d_A 465 SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG 544 (699)
T ss_dssp SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCC
T ss_pred CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccE
Confidence 77787777788898888765543333332234567889998655444433 22 67777776543221111111223356
Q ss_pred EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 008467 447 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN---GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 523 (564)
Q Consensus 447 i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~ 523 (564)
|+|+|.+. .+.++-+..+.|..+++.... ...+. ........|++..+ .++++....+.|..++..+
T Consensus 545 lavd~~~~--------~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 545 ITLDLLSG--------RLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp EEECTTTC--------CEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred EEEeccCC--------EEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence 78877643 244555667889999986322 22221 11122345666544 4444555678999999888
Q ss_pred CeEEEEEe
Q 008467 524 GKIVKTYT 531 (564)
Q Consensus 524 ~~~~~~~~ 531 (564)
|+.+..+.
T Consensus 615 G~~~~~i~ 622 (699)
T 1n7d_A 615 GSDVNLLA 622 (699)
T ss_dssp EEEEECCC
T ss_pred CCceEEee
Confidence 88776654
No 294
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.70 E-value=0.0053 Score=61.75 Aligned_cols=98 Identities=18% Similarity=0.181 Sum_probs=62.4
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEEEE-e-CCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeCC--CCeE--EEEEecC---
Q 008467 464 ILASASFDSTVKLWDVELGKLLYSL-N-GHREPVYSLAFSPTGEYLA-SGSLDKSMHIWSLK--EGKI--VKTYTGN--- 533 (564)
Q Consensus 464 ~l~s~s~dg~i~iwd~~~~~~~~~~-~-~h~~~i~~~~~spdg~~la-sgs~dg~i~iw~~~--~~~~--~~~~~~~--- 533 (564)
+.++-..++.|+.+|..++.....+ . +....-..|+|+|+|++|. +-...+.|..++.. ++.+ ...+.+.
T Consensus 242 lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~ 321 (433)
T 4hw6_A 242 IYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSS 321 (433)
T ss_dssp EEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTC
T ss_pred EEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCC
Confidence 4444456788999998877652222 1 1122235799999999554 44556889998765 3432 1222221
Q ss_pred -------------CCEEEEEE---------ccCCCEEEEEEcCCcEEEEE
Q 008467 534 -------------GGIFEVCW---------NKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 534 -------------~~i~~~~w---------~~~g~~la~~~~~~~v~v~~ 561 (564)
.....+++ +++|+..++-..++.|.+++
T Consensus 322 ~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 322 PGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp CCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred CccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 12567999 78888877777788888775
No 295
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.64 E-value=0.093 Score=55.34 Aligned_cols=221 Identities=10% Similarity=0.008 Sum_probs=136.9
Q ss_pred CCCeEEEEECCCcee-Eeec-CCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCcceeEEEee--cccCeEEEEcCCC
Q 008467 295 YDGQARIWSTNGDLK-CTLS-KHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEF--HSGPTLDVDWRNN 369 (564)
Q Consensus 295 ~dg~i~vw~~~~~~~-~~~~-~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~ 369 (564)
....|+..+.++... ..+. ..-..+.+|+|++.+..|+ +-..++.|..+++........+.. ....-+.++|...
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~ 92 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK 92 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence 456788888765422 2221 1234678999999776665 445678899999876544333322 2334578899988
Q ss_pred ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe--CCCcEEEEeCCCCeeeeecccccccEEEE
Q 008467 370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIWNMKQDKYVHDLREHSKEIYTI 447 (564)
Q Consensus 370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s--~dg~i~iwd~~~~~~~~~~~~~~~~i~~i 447 (564)
..+.+-...+.|.+.+.........+...-.....++++|....|.... ..+.|...++........+ ........|
T Consensus 93 ~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~P~Gl 171 (628)
T 4a0p_A 93 NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGL 171 (628)
T ss_dssp EEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSSEEEE
T ss_pred EEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCCcceE
Confidence 8888888889999999876543323333345578999998655554443 2567777777654432222 233445778
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 008467 448 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 526 (564)
Q Consensus 448 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~ 526 (564)
++.+.+. .+..+-...+.|...|+..... ..+.........|++.. +..+.+-...+.|...|..+|+.
T Consensus 172 alD~~~~--------~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 172 TIDYAKR--------RLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp EEETTTT--------EEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred EEccccC--------EEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence 8877543 2444455678899999864322 22222233456788765 44445545578899999777653
No 296
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.60 E-value=0.066 Score=57.94 Aligned_cols=215 Identities=11% Similarity=0.018 Sum_probs=124.0
Q ss_pred CCCcEEEEECCCcceeEEEeecccCe--EEEEcCCCceEEEEeCCCeEEEEEcCCC----ceeeEecCCCcceEEEEECC
Q 008467 336 CDKTAIVWDVKTEEWKQQFEFHSGPT--LDVDWRNNVSFATSSTDNMIYVCKIGEN----RPIKTFAGHQGEVNCVKWDP 409 (564)
Q Consensus 336 ~D~~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~i~~~~~~~~----~~~~~~~~h~~~i~~v~~~~ 409 (564)
....|+..++........... ...+ +++++..+..|++-...+.|+.+++... .....+.........|++++
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~-~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~ 480 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 480 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred cccceeEeeccCCcceeeecC-CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence 345677777776554433322 2223 3445556777778778888888887642 22233333344567899988
Q ss_pred CCC-EEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEE-eCCCeEEEEeCCCCeEEEE
Q 008467 410 TGS-LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA-SFDSTVKLWDVELGKLLYS 487 (564)
Q Consensus 410 ~~~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~ 487 (564)
.+. ++++-+..+.|.+.++........+.........|++.|... .++.+- +..+.|...++........
T Consensus 481 ~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g--------~LYwtD~g~~~~I~~~~~dG~~~~~l 552 (791)
T 3m0c_C 481 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG--------FMYWTDWGTPAKIKKGGLNGVDIYSL 552 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT--------EEEEEECSSSCEEEEEETTSCCEEEE
T ss_pred cCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCC--------CEEEecCCCCCeEEEEecCCCceEEE
Confidence 774 555666688999999876543333333334467888887532 233333 2236788888873333222
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEecC---CCEEEEEEccCCCEEEEE-EcCCcEEEEE
Q 008467 488 LNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGKIVKTYTGN---GGIFEVCWNKEGDKIAAC-FANHTVCVLD 561 (564)
Q Consensus 488 ~~~h~~~i~~~~~spdg~~lasgs-~dg~i~iw~~~~~~~~~~~~~~---~~i~~~~w~~~g~~la~~-~~~~~v~v~~ 561 (564)
+.......+.|++++.+..|..+. ..+.|..+++............ ...+.|+.. +++|..+ ..++.|..+|
T Consensus 553 v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 553 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSAN 629 (791)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEe
Confidence 333335678999998877766654 4568999998654433333321 234566653 3344433 4455665554
No 297
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.52 E-value=0.041 Score=53.58 Aligned_cols=60 Identities=12% Similarity=0.131 Sum_probs=41.8
Q ss_pred CCEEEEEEc-------CCCCEEEEEeCCCcEEEEeCCCC-eEE--EEEe-c-CCCEEEEEEccCCCEEEEEE
Q 008467 493 EPVYSLAFS-------PTGEYLASGSLDKSMHIWSLKEG-KIV--KTYT-G-NGGIFEVCWNKEGDKIAACF 552 (564)
Q Consensus 493 ~~i~~~~~s-------pdg~~lasgs~dg~i~iw~~~~~-~~~--~~~~-~-~~~i~~~~w~~~g~~la~~~ 552 (564)
.....++|. .+|.++++.-..+.|...++... +.. ..+- + ...+.++++.|||...++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 356788883 57777777767788888888753 332 2332 2 35689999999998777764
No 298
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.51 E-value=0.0022 Score=64.56 Aligned_cols=152 Identities=11% Similarity=0.192 Sum_probs=93.7
Q ss_pred ceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC----eEE
Q 008467 401 EVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS----TVK 475 (564)
Q Consensus 401 ~i~~v~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg----~i~ 475 (564)
....++++| ++..|..+...+.|+.+|+.++.... +.........++|++++. .++++...++ .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~--------~lyvad~~~~~~~~~v~ 208 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEAD--------SMIITNDQNNNDRPNNY 208 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSS--------EEEEEECCSCTTSEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCC--------EEEEEeCCCCcccceEE
Confidence 346789998 34445555444889999988765433 323344568899988764 2344443222 233
Q ss_pred EEeCCCCeEE--EEEeCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEec--CCCEEEEEEccCCCEEEE
Q 008467 476 LWDVELGKLL--YSLNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAA 550 (564)
Q Consensus 476 iwd~~~~~~~--~~~~~h~~~i~~~~~sp-dg~~lasgs~dg~i~iw~~~~~~~~~~~~~--~~~i~~~~w~~~g~~la~ 550 (564)
+++.. +... ..+.. ......++++| +|.++++-..++.|..|+..++........ ......++|+|+|++|.+
T Consensus 209 ~~~~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 209 ILTRE-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp EEEGG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred EEeCC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEE
Confidence 34422 2111 12221 22347789999 677777766788999999987765333322 234789999999995554
Q ss_pred E-EcCCcEEEEEee
Q 008467 551 C-FANHTVCVLDFR 563 (564)
Q Consensus 551 ~-~~~~~v~v~~~~ 563 (564)
+ ..++.|.+++..
T Consensus 287 ~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 287 VVVNQHYILRSDYD 300 (430)
T ss_dssp EETTTTEEEEEEEE
T ss_pred EECCCCEEEEEeCC
Confidence 4 567788887753
No 299
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.47 E-value=0.12 Score=52.31 Aligned_cols=114 Identities=8% Similarity=0.068 Sum_probs=64.4
Q ss_pred ceEEEEECCC--CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEE-------CCCCC
Q 008467 218 EVCACAWSPA--GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW-------NGEGT 288 (564)
Q Consensus 218 ~V~~~~~sp~--~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~-------s~~g~ 288 (564)
....++|+|. ++++++-...+.|++.|+.++.. ..+.. ...........++| +++|.
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v-----------~~l~~---~~~~~~~~p~~ia~~~~~~~~d~~G~ 205 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRML-----------SSPLN---INTIPTNRIRSIAFNKKIEGYADEAE 205 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEE-----------EEEEC---CTTSSCSBEEEEEECCCBTTTBCTTC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEE-----------EEEEc---cCccccCCCcEEEEeecccccCCCCC
Confidence 3568899993 44555544446677777765421 11111 10112235788999 99999
Q ss_pred EEEEEeCCC-------eEEEEECCC--cee-----EeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECC
Q 008467 289 LLATGSYDG-------QARIWSTNG--DLK-----CTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVK 346 (564)
Q Consensus 289 ~l~sg~~dg-------~i~vw~~~~--~~~-----~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~ 346 (564)
.|+.+...+ .|.+.+... ... ..+..... ..+++.+|++ ..+++-..++.|..+|+.
T Consensus 206 ~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~-p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 206 YMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQ-CNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp EEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESC-CCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred EEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCC-ceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 666666554 255554332 321 12222122 2467788854 445556677789999886
No 300
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.41 E-value=0.11 Score=50.52 Aligned_cols=65 Identities=15% Similarity=0.135 Sum_probs=43.7
Q ss_pred CCEEEEEEcC-------CCCEEEEEeCCCcEEEEeCCCCeEEEEEe---c-CCCEEEEEEccCCCEEEEEE-cCCcE
Q 008467 493 EPVYSLAFSP-------TGEYLASGSLDKSMHIWSLKEGKIVKTYT---G-NGGIFEVCWNKEGDKIAACF-ANHTV 557 (564)
Q Consensus 493 ~~i~~~~~sp-------dg~~lasgs~dg~i~iw~~~~~~~~~~~~---~-~~~i~~~~w~~~g~~la~~~-~~~~v 557 (564)
..+..++|.. +|.++++.-..+.|...++..++.+.... . ...+.++++.|||...++.. .+|.|
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 3567788864 47777776677888888887765543321 2 34789999999999666553 34443
No 301
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.40 E-value=0.047 Score=57.52 Aligned_cols=223 Identities=9% Similarity=-0.009 Sum_probs=124.8
Q ss_pred CCeEEEEECCCce--eEeecCCCCCEEEEEeCCCCCEEEEee-CCCcEEEEECCCcce-eEEEee--cccCeEEEEcCCC
Q 008467 296 DGQARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTEEW-KQQFEF--HSGPTLDVDWRNN 369 (564)
Q Consensus 296 dg~i~vw~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~~~~~~-~~~~~~--~~~~~~~~~~~~~ 369 (564)
...|+..+..+.. ...+...-..+.+|+|++.+..|+-+. ..+.|..+++..... ...+.. ....-+.++|...
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~ 96 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 96 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence 4567777766532 222223344578999999777766544 457888888865532 122221 2223577889888
Q ss_pred ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC--CCcEEEEeCCCCeeeeecccccccEEEE
Q 008467 370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD--DVTAKIWNMKQDKYVHDLREHSKEIYTI 447 (564)
Q Consensus 370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~--dg~i~iwd~~~~~~~~~~~~~~~~i~~i 447 (564)
..+++-...+.|.+.+.........+...-.....|+++|.+..|..... .+.|...++........+...-.....|
T Consensus 97 ~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Gl 176 (619)
T 3s94_A 97 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 176 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEE
Confidence 88888888999999998765433333344455778999987555444432 4566666665433322222223345778
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 008467 448 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV 527 (564)
Q Consensus 448 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~ 527 (564)
++.+.+. .+..+-...+.|...|+..........+.......|++..+ ..+.+-...+.|...|..+|+..
T Consensus 177 ald~~~~--------~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 177 TLDYEEQ--------KLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp EEETTTT--------EEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred EEEccCC--------EEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence 8877542 24444455678888888643322112211122356777655 34444445678999998777543
No 302
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.36 E-value=0.33 Score=54.97 Aligned_cols=321 Identities=15% Similarity=0.159 Sum_probs=163.8
Q ss_pred ccceEEEEECCC------CCEEEEEEC-CCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467 216 TSEVCACAWSPA------GSLLASGSG-DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 288 (564)
Q Consensus 216 ~~~V~~~~~sp~------~~~lasgs~-D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 288 (564)
..+|.|+++.|. +.++|.|.. |++++|+.+.+-.. .......... ....|.-+.+ ....
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~-----------~~~~~L~~~~--~p~si~l~~~-~~~~ 618 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFEL-----------LHKEMLGGEI--IPRSILMTTF-ESSH 618 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCE-----------EEEEECCSSC--CEEEEEEEEE-TTEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCe-----------EEEEECCCCC--CCcEEEEEEe-CCCc
Confidence 357999999874 368999996 99999999974221 1111111100 0112333344 2346
Q ss_pred EEEEEeCCCeEEEEECC---CceeE---eecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeE
Q 008467 289 LLATGSYDGQARIWSTN---GDLKC---TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 362 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~---~~~~~---~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 362 (564)
+|..|-.||.+.-+..+ |.+.. .+-+ ..|+.=..+...|..-+-+..++...++--+ +.+.-. .....++.
T Consensus 619 ~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v~ 695 (1158)
T 3ei3_A 619 YLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEVN 695 (1158)
T ss_dssp EEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-EBSSSCCC
T ss_pred EEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-ccChHHhc
Confidence 78899999988665532 33322 2223 3455444444444443333345555555433 221111 11111121
Q ss_pred EE-EcCC---CceEEEEeCCCeEEEEEcCCCc--eeeEecCCCcceEEEEECCCCCEEEEEeCC----------------
Q 008467 363 DV-DWRN---NVSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPTGSLLASCSDD---------------- 420 (564)
Q Consensus 363 ~~-~~~~---~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~h~~~i~~v~~~~~~~~las~s~d---------------- 420 (564)
.+ .|.. ...++..+ ++.++++.+.... +++.+.- ...+..++++|..+.++.+..+
T Consensus 696 ~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL-~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 773 (1158)
T 3ei3_A 696 YMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPL-YESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPS 773 (1158)
T ss_dssp EEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEEC-SSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCC
T ss_pred eEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeC-CCCceEEEEcCCCCEEEEEEEeccccccccccchhhhh
Confidence 12 2221 23444333 4558888775432 2332221 2356778888777665443211
Q ss_pred ---------------------------------CcEEEEeCCCCeeeeeccc-ccccEEEEEEccCCCCCCCCCCcEEEE
Q 008467 421 ---------------------------------VTAKIWNMKQDKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILA 466 (564)
Q Consensus 421 ---------------------------------g~i~iwd~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~~~~~~~~~l~ 466 (564)
+.|++.|..+.+.+..+.- ....+.+++.-.-.. +...+++
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~-----~~~~~lv 848 (1158)
T 3ei3_A 774 ASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGK-----DPNTYFI 848 (1158)
T ss_dssp HHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTT-----CCCCEEE
T ss_pred hhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEcc-----CCCEEEE
Confidence 2356667666665544332 122344444322211 1122555
Q ss_pred EEe----------CCCeEEEEeCCCCeEEEEE-eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE-EEecCC
Q 008467 467 SAS----------FDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK-TYTGNG 534 (564)
Q Consensus 467 s~s----------~dg~i~iwd~~~~~~~~~~-~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~-~~~~~~ 534 (564)
.|. ..|.|.++++..++..... ....++|++++-- +|++||+. ...|++|++...+.+. ......
T Consensus 849 VGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~~~~~~~~ 925 (1158)
T 3ei3_A 849 VGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELRTECNHYN 925 (1158)
T ss_dssp EEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEEEEEEECC
T ss_pred EEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCCCceEEEEeeccc
Confidence 554 3478999998755432211 2245789988632 45544443 3679999998665443 111111
Q ss_pred CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 535 GIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 535 ~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
.+..+.....|+++++|..-..|.++-++
T Consensus 926 ~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~ 954 (1158)
T 3ei3_A 926 NIMALYLKTKGDFILVGDLMRSVLLLAYK 954 (1158)
T ss_dssp CSCEEEEEEETTEEEEEESSBCEEEEEEE
T ss_pred cEEEEEEeccCCEEEEEEhhheEEEEEEE
Confidence 22233333457888888877777777655
No 303
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.29 E-value=0.015 Score=55.09 Aligned_cols=187 Identities=12% Similarity=0.166 Sum_probs=110.3
Q ss_pred EEEcCC-CceE-EEEeCCCeEEEEEcCCCceee-EecC----CC--cceEEEEE---CCCCCEEEEEe------------
Q 008467 363 DVDWRN-NVSF-ATSSTDNMIYVCKIGENRPIK-TFAG----HQ--GEVNCVKW---DPTGSLLASCS------------ 418 (564)
Q Consensus 363 ~~~~~~-~~~~-~~~~~d~~i~~~~~~~~~~~~-~~~~----h~--~~i~~v~~---~~~~~~las~s------------ 418 (564)
++.|.. ...| ++.-..+.|..|+...+.... .+.+ .. ..+..+.| .|+++++++..
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~ 96 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS 96 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence 455643 3444 444478999999887543322 2322 11 13578999 68888877543
Q ss_pred -CCCcEEEEeCC---CCeeeeec--cccc-----------ccEEEEEEccCCCCCCCCCCcEEEEEEeCC-CeEEEEeCC
Q 008467 419 -DDVTAKIWNMK---QDKYVHDL--REHS-----------KEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVE 480 (564)
Q Consensus 419 -~dg~i~iwd~~---~~~~~~~~--~~~~-----------~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~ 480 (564)
.+..+..+|+. +++.+... .... .....++..++|. ..++++.- +.|...+..
T Consensus 97 ~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn---------aYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 97 HGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN---------SYVAFALGMPAIARVSAD 167 (334)
T ss_dssp SSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC---------EEEEEEESSCEEEEECTT
T ss_pred CCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC---------EEEeCCCCCCeEEEEeCC
Confidence 16779999998 66655332 2211 2367788888775 45567777 777777765
Q ss_pred CCeEEEEE--e----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--EEEEe-cC----CCEEE-EEEccCCC
Q 008467 481 LGKLLYSL--N----GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI--VKTYT-GN----GGIFE-VCWNKEGD 546 (564)
Q Consensus 481 ~~~~~~~~--~----~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~--~~~~~-~~----~~i~~-~~w~~~g~ 546 (564)
|+.+..+ . ......+.|+++|+|+.|++....|.|..+|+.+... +..-. +. ..... +.-..+|+
T Consensus 168 -G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~ 246 (334)
T 2p9w_A 168 -GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNE 246 (334)
T ss_dssp -SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred -CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCE
Confidence 3322221 1 1122367899999999888887799999999874322 21110 11 12233 34456788
Q ss_pred EEEEE-EcCCcEEE
Q 008467 547 KIAAC-FANHTVCV 559 (564)
Q Consensus 547 ~la~~-~~~~~v~v 559 (564)
.|+++ ..++.+.+
T Consensus 247 vllV~~~~~~~~~l 260 (334)
T 2p9w_A 247 SVLVGARAPYAISF 260 (334)
T ss_dssp EEEEEEETTEEEEE
T ss_pred EEEEEcCCCCEEEE
Confidence 74544 44544433
No 304
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.13 E-value=0.0019 Score=69.38 Aligned_cols=215 Identities=12% Similarity=0.041 Sum_probs=112.3
Q ss_pred CCCcEEEEECCCcceeEEEeecccCeEEEEc--CCCceEEEEeCCCeEEEEEcCC----CceeeEecCCCcceEEEEECC
Q 008467 336 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGE----NRPIKTFAGHQGEVNCVKWDP 409 (564)
Q Consensus 336 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~----~~~~~~~~~h~~~i~~v~~~~ 409 (564)
..+.|+..++.+......+... ..+..+.| ..+..|++-...+.|+.+++.. ......+.........|++++
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~~-~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPNL-RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCCC-TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred CccceEEEeCCCCcceeeeccC-cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 3457778887766544332221 12233344 4555666666677888888764 222222211122345678875
Q ss_pred C-CCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeC-CCeEEEEeCCCCeEEEE
Q 008467 410 T-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF-DSTVKLWDVELGKLLYS 487 (564)
Q Consensus 410 ~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~ 487 (564)
. ++++++-...+.|.++++........+.........|++.|.+. .++.+-.. .+.|..+++. |.....
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g--------~ly~td~~~~~~I~~~~~d-G~~~~~ 533 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHG--------FMYWTDWGTPAKIKKGGLN-GVDIYS 533 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSS--------CCEECCCSSSCCEEBCCSS-SCCCCE
T ss_pred eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCC--------cEEEcccCCCCeEEEEeCC-CCCeeE
Confidence 4 45556656678899999876543332222222334566665432 12233222 2677777665 222222
Q ss_pred E-eCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEecC---CCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467 488 L-NGHREPVYSLAFSPTGEYL-ASGSLDKSMHIWSLKEGKIVKTYTGN---GGIFEVCWNKEGDKIAACFANHTVCVLD 561 (564)
Q Consensus 488 ~-~~h~~~i~~~~~spdg~~l-asgs~dg~i~iw~~~~~~~~~~~~~~---~~i~~~~w~~~g~~la~~~~~~~v~v~~ 561 (564)
+ .......+.|+|+|++..| ++-+..+.|.++++............ .....|++..+ ..+.+...++.|.++|
T Consensus 534 l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d 611 (699)
T 1n7d_A 534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSAN 611 (699)
T ss_dssp ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEE
T ss_pred EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEE
Confidence 2 1122345789999986555 44456678999998643322222211 22445666544 3444555667787776
No 305
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.94 E-value=0.049 Score=53.26 Aligned_cols=133 Identities=15% Similarity=0.154 Sum_probs=83.0
Q ss_pred CeEEEEEcCCCceeeEecCC----CcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe------------eeeeccc---
Q 008467 379 NMIYVCKIGENRPIKTFAGH----QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK------------YVHDLRE--- 439 (564)
Q Consensus 379 ~~i~~~~~~~~~~~~~~~~h----~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~------------~~~~~~~--- 439 (564)
+.|+.+++......+.+.-- -..|..+..+|+|++||..+. ..|.|-.+..+. ....+.-
T Consensus 41 n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~ 119 (452)
T 3pbp_A 41 NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE 119 (452)
T ss_dssp TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence 44555555533333333322 225778999999999988765 478887765221 0112221
Q ss_pred ---ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--eEEEEEe---------CCCCCEEEEEEcCCCC
Q 008467 440 ---HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--KLLYSLN---------GHREPVYSLAFSPTGE 505 (564)
Q Consensus 440 ---~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~---------~h~~~i~~~~~spdg~ 505 (564)
...+|..+.|+|.+.. ...|++-..|++||+||+... ++. .++ .....|.+++|+++|-
T Consensus 120 ~~~~~s~I~qVlWHPl~~~------ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~l 192 (452)
T 3pbp_A 120 EVGPKSSIKKVLFHPKSYR------DSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGL 192 (452)
T ss_dssp C--CCCCEEEEEECTTBGG------GCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSS
T ss_pred ccCCCCceeEEEeccccCC------CCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCc
Confidence 2467999999998752 125677778999999999752 112 222 2235689999999886
Q ss_pred EEEEEe--CCCcEEEE
Q 008467 506 YLASGS--LDKSMHIW 519 (564)
Q Consensus 506 ~lasgs--~dg~i~iw 519 (564)
.|...+ ..|-|+-.
T Consensus 193 TLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 193 TLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CEEEEECTTSCEEEEE
T ss_pred EEEEEecCCCCCEEEE
Confidence 666544 77777643
No 306
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.94 E-value=0.32 Score=47.10 Aligned_cols=101 Identities=14% Similarity=0.148 Sum_probs=57.2
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC----CCEEEE
Q 008467 217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE----GTLLAT 292 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~----g~~l~s 292 (564)
.....++|.|+|+++++ ..+|.|++++ ++.. ..+.... ...........++|+|+ +.+.++
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~-----------~~~~~~~-v~~~g~~~p~gia~~pdf~~~g~lYv~ 95 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRL-----------STYAELS-VYHRGESGLLGLALHPRFPQEPYVYAY 95 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEE-----------EEEEECC-CCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc-----------cEeecce-EeecCCCCceeEEECCCCCCCCEEEEE
Confidence 34678999999996665 5668888887 3321 0111111 11112345789999998 444444
Q ss_pred EeCC-----CeEEEEECCCc-------eeEeec-----CCCCCEEEEEeCCCCCEEEEe
Q 008467 293 GSYD-----GQARIWSTNGD-------LKCTLS-----KHKGPIFSLKWNKKGDYLLTG 334 (564)
Q Consensus 293 g~~d-----g~i~vw~~~~~-------~~~~~~-----~h~~~V~~l~~~~~~~~l~s~ 334 (564)
-... +.|..++..+. +...+. .|. ...++|.|+|...++.
T Consensus 96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 96 RTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHS--GGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCC--CCCEEECTTSCEEEEC
T ss_pred EecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcC--CceEEECCCCCEEEEE
Confidence 3332 56666765532 111122 122 2578999999766654
No 307
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.91 E-value=0.094 Score=50.71 Aligned_cols=153 Identities=13% Similarity=0.096 Sum_probs=89.3
Q ss_pred EEEEECCCCCEEEEEe------------CCCcEEEEeCCCCe-eeeec--cc-----ccccEEEEEEccCCCCCCCCCCc
Q 008467 403 NCVKWDPTGSLLASCS------------DDVTAKIWNMKQDK-YVHDL--RE-----HSKEIYTIRWSPTGSGTNNPNQQ 462 (564)
Q Consensus 403 ~~v~~~~~~~~las~s------------~dg~i~iwd~~~~~-~~~~~--~~-----~~~~i~~i~~~p~~~~~~~~~~~ 462 (564)
..+...|+|..+++++ .+|.|.++|.++.. ....+ .+ ..-....+.+.++. ++.
T Consensus 53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~------dg~ 126 (355)
T 3sre_A 53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDD------DNT 126 (355)
T ss_dssp CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECT------TCC
T ss_pred ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECC------CCc
Confidence 3566778776666552 68999999987421 11122 11 11234555554431 111
Q ss_pred EEEEEE-eC--CCeEEEEeCCC--CeE--EEEEeCC-CCCEEEEEEcCCCCEEEEEeC-----------------CCcEE
Q 008467 463 LILASA-SF--DSTVKLWDVEL--GKL--LYSLNGH-REPVYSLAFSPTGEYLASGSL-----------------DKSMH 517 (564)
Q Consensus 463 ~~l~s~-s~--dg~i~iwd~~~--~~~--~~~~~~h-~~~i~~~~~spdg~~lasgs~-----------------dg~i~ 517 (564)
..|..+ .. +.+|.+|++.. +.. +.++.+. -...+++++.++|.++++... .|.|.
T Consensus 127 ~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 127 VYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence 223333 22 56788887654 222 2334332 235799999999999887651 24555
Q ss_pred EEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEE-cCCcEEEEEee
Q 008467 518 IWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACF-ANHTVCVLDFR 563 (564)
Q Consensus 518 iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~-~~~~v~v~~~~ 563 (564)
-++. +++.....+-...+.++|+|||+.|.++. ..+.|.+|+++
T Consensus 207 r~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 207 YYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp EECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred EEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 5554 34333334445578999999999887774 46788888874
No 308
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.80 E-value=0.19 Score=48.51 Aligned_cols=165 Identities=15% Similarity=0.142 Sum_probs=92.7
Q ss_pred CCCcEEEEECCC--cceeEEEeec-------ccCeEEEEcC---CC--ceEEEEeC--CCeEEEEEcCCCc----eeeEe
Q 008467 336 CDKTAIVWDVKT--EEWKQQFEFH-------SGPTLDVDWR---NN--VSFATSST--DNMIYVCKIGENR----PIKTF 395 (564)
Q Consensus 336 ~D~~v~iwd~~~--~~~~~~~~~~-------~~~~~~~~~~---~~--~~~~~~~~--d~~i~~~~~~~~~----~~~~~ 395 (564)
.+|.|.++|+.+ .+. ..+... ......++.. ++ ..|++-.. +..|.++++.... .+..+
T Consensus 81 ~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence 688999999873 222 222221 1234444432 12 23444443 4566676665432 23334
Q ss_pred cCCC-cceEEEEECCCCCEEEEEeC-----------------CCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCC
Q 008467 396 AGHQ-GEVNCVKWDPTGSLLASCSD-----------------DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTN 457 (564)
Q Consensus 396 ~~h~-~~i~~v~~~~~~~~las~s~-----------------dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~ 457 (564)
.+.. ...+.+.+.++|.+.++..- .|.+.-++. ++. ..+...-..-..++|+|++.
T Consensus 160 ~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~spDg~--- 233 (355)
T 3sre_A 160 RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINISPDGK--- 233 (355)
T ss_dssp CCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEECTTSS---
T ss_pred ccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-EEeecCCcccCcceECCCCC---
Confidence 3322 35789999999998887641 233444443 322 22222223457899999875
Q ss_pred CCCCcEEEEEEeCCCeEEEEeCCC-CeE--EEEEeCCCCCEEEEEEcC-CCCEEEEEeCC
Q 008467 458 NPNQQLILASASFDSTVKLWDVEL-GKL--LYSLNGHREPVYSLAFSP-TGEYLASGSLD 513 (564)
Q Consensus 458 ~~~~~~~l~s~s~dg~i~iwd~~~-~~~--~~~~~~h~~~i~~~~~sp-dg~~lasgs~d 513 (564)
.+.++-+..+.|..|++.. ++. ...+. .......+++.+ +|++.+++..+
T Consensus 234 -----~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 234 -----YVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp -----EEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESC
T ss_pred -----EEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCC
Confidence 3555566778999999863 332 12332 234567899999 59988876544
No 309
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.61 E-value=0.49 Score=44.58 Aligned_cols=208 Identities=12% Similarity=0.164 Sum_probs=131.4
Q ss_pred eCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCC-CceeeEecCCCc--
Q 008467 324 WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NRPIKTFAGHQG-- 400 (564)
Q Consensus 324 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~h~~-- 400 (564)
.+|..+.++-=+ ..++.++|+.+...++.+.+.. ++.=-.|.+...++..+ +..||.|++.. ..|++.|..|..
T Consensus 74 MnP~~~ViALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~ 150 (365)
T 2xzh_A 74 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA 150 (365)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CEEEEEECSSSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGT
T ss_pred eCCCccEEEEec-CCeEEEechHHhhhhcceecCC-ccEEEEecCCCeEEEEc-CCcEEEEcccCCCCCceeeecchhcc
Confidence 367666555433 6789999999998888877753 55556787777665443 56899999964 578888887754
Q ss_pred --ceEEEEECCCCCEEEEEeC-------CCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008467 401 --EVNCVKWDPTGSLLASCSD-------DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 471 (564)
Q Consensus 401 --~i~~v~~~~~~~~las~s~-------dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d 471 (564)
.|..-..+++.++++..+- .|.+.+|....+. -+.+.+|......+ ..+|. +....+++-+...
T Consensus 151 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~--~~~g~----~~~~~lf~fa~r~ 223 (365)
T 2xzh_A 151 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQF--KMEGN----AEESTLFCFAVRG 223 (365)
T ss_dssp TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEE--CCTTC----SSCEEEEEEEEEE
T ss_pred cceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeeeeeeEEE--ecCCC----CCCceEEEEEEec
Confidence 4667777899998665432 3677888876543 34566776543333 23332 1122244433332
Q ss_pred ---CeEEEEeCCCC---e-----EEEEE-e---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCC
Q 008467 472 ---STVKLWDVELG---K-----LLYSL-N---GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGG 535 (564)
Q Consensus 472 ---g~i~iwd~~~~---~-----~~~~~-~---~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~-~~~ 535 (564)
+.++|.++... . ....+ - .-.+---++..|+.-..+..-+.-|.|++||+++|.++...+- ...
T Consensus 224 ~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~ 303 (365)
T 2xzh_A 224 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET 303 (365)
T ss_dssp TTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred CCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCc
Confidence 57888887432 1 11111 1 1123345677777777888888999999999999998765543 233
Q ss_pred EEEEEE
Q 008467 536 IFEVCW 541 (564)
Q Consensus 536 i~~~~w 541 (564)
|+--+-
T Consensus 304 iF~ta~ 309 (365)
T 2xzh_A 304 IFVTAP 309 (365)
T ss_dssp EEEEEE
T ss_pred eEEecc
Confidence 443333
No 310
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.25 E-value=0.31 Score=45.84 Aligned_cols=223 Identities=11% Similarity=0.124 Sum_probs=109.2
Q ss_pred CCCEEEEEe-CC-----CeEEEEECCCceeEeecCC---CCCEEEEEeCCCCCEEEEeeCC-----CcEEEEECCCcc--
Q 008467 286 EGTLLATGS-YD-----GQARIWSTNGDLKCTLSKH---KGPIFSLKWNKKGDYLLTGSCD-----KTAIVWDVKTEE-- 349 (564)
Q Consensus 286 ~g~~l~sg~-~d-----g~i~vw~~~~~~~~~~~~h---~~~V~~l~~~~~~~~l~s~s~D-----~~v~iwd~~~~~-- 349 (564)
++.+++.|+ .+ ..+.++|.....-..+... ......+. .++..++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 345566666 32 3677788655433322211 11111222 245666677755 468999998888
Q ss_pred -eeEEEeecccC-eEEEEcCCCceEEEEeCC-----CeEEEEEcCCCce--eeEecCCCcceEEEEECCCCCEEEEEeCC
Q 008467 350 -WKQQFEFHSGP-TLDVDWRNNVSFATSSTD-----NMIYVCKIGENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDD 420 (564)
Q Consensus 350 -~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~~--~~~~~~h~~~i~~v~~~~~~~~las~s~d 420 (564)
|...-...... ...+...++..++.++.+ ..+.+++..+..- +..+......-.++.+ ++++++.|+.+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 169 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYD 169 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred eeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCC
Confidence 76543221111 111222355566666533 3577788765532 1111111111222333 67777777754
Q ss_pred -----CcEEEEeCCCCeeeee--cccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeEEEEeCCCCeEEEE-
Q 008467 421 -----VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELGKLLYS- 487 (564)
Q Consensus 421 -----g~i~iwd~~~~~~~~~--~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~- 487 (564)
..+.+||..+...... +.........+.+ + + .+++.|+.+ ..+.+||+.+.+-...
T Consensus 170 ~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~--------~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 238 (301)
T 2vpj_A 170 GLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--N--------D-HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT 238 (301)
T ss_dssp SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T--------T-EEEEECCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--C--------C-EEEEEeCCCCCcccceEEEEeCCCCcEEECC
Confidence 3578888876654321 1110001111111 1 1 245555543 4688999987653211
Q ss_pred -EeCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCe
Q 008467 488 -LNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGK 525 (564)
Q Consensus 488 -~~~h~~~i~~~~~spdg~~lasgs~d-----g~i~iw~~~~~~ 525 (564)
+.........+.+ +++.++.|+.+ ..|.+||..+.+
T Consensus 239 ~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 239 SMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 1111111122233 67777777765 357788887654
No 311
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.22 E-value=1 Score=44.15 Aligned_cols=210 Identities=13% Similarity=0.189 Sum_probs=133.6
Q ss_pred eCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcC-CCceeeEecCCCc--
Q 008467 324 WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQG-- 400 (564)
Q Consensus 324 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~~-- 400 (564)
.+|..+.++-=+ ..++.|+|+.+...+..+.+.. ++.=-.|.+...++.. ++..||.|++. ...|++.|..|..
T Consensus 73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~ 149 (494)
T 1bpo_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLA 149 (494)
T ss_dssp ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEE-CSSEEEEEESSSSCCCEEEEECCGGGT
T ss_pred eCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEE-cCCeeEEecccCCCCchhheecchhcc
Confidence 466665544333 6799999999998888777655 3444567666655443 46789999996 4578888887753
Q ss_pred --ceEEEEECCCCCEEEEEe-------CCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008467 401 --EVNCVKWDPTGSLLASCS-------DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 471 (564)
Q Consensus 401 --~i~~v~~~~~~~~las~s-------~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d 471 (564)
.|..-..+++.++++..+ -.|.+.+|....+. -+.+.+|......+.. +|. +....+++-+...
T Consensus 150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~--~g~----~~~~~lf~fa~r~ 222 (494)
T 1bpo_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKM--EGN----AEESTLFCFAVRG 222 (494)
T ss_dssp TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEEC--TTC----SSEEEEEEEEECS
T ss_pred cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEec--CCC----CCCceEEEEEEec
Confidence 466777899999876433 24677889876543 3456677665444332 221 1122345555543
Q ss_pred ---CeEEEEeCCCC--------eEEEEE--e--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCC
Q 008467 472 ---STVKLWDVELG--------KLLYSL--N--GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGG 535 (564)
Q Consensus 472 ---g~i~iwd~~~~--------~~~~~~--~--~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~-~~~ 535 (564)
+.++|.++... +....+ . .-.+---++..|+.-..+..-+.-|.|++||+.+|.++..-+- ...
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~ 302 (494)
T 1bpo_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET 302 (494)
T ss_dssp TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCc
Confidence 78888887532 111111 0 1123345778888878888889999999999999998765543 233
Q ss_pred EEEEEEcc
Q 008467 536 IFEVCWNK 543 (564)
Q Consensus 536 i~~~~w~~ 543 (564)
|+--+-+.
T Consensus 303 iF~t~~~~ 310 (494)
T 1bpo_A 303 IFVTAPHE 310 (494)
T ss_dssp EEEEEEET
T ss_pred eEEecccC
Confidence 44444333
No 312
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.14 E-value=1.7 Score=45.73 Aligned_cols=151 Identities=10% Similarity=0.005 Sum_probs=83.8
Q ss_pred cceEEEEECCCCC-EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 008467 217 SEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 295 (564)
Q Consensus 217 ~~V~~~~~sp~~~-~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~ 295 (564)
.....+++.+.+. +..+-...+.|.+.++..... ..+ .. ..-.....+++.|....|.....
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~---------~~l-~~-------~~l~~P~~iavdp~~G~lY~tD~ 142 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR---------QVL-VW-------KDLDSPRALALDPAEGFMYWTEW 142 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC---------EEE-EC-------SSCCCEEEEEEETTTTEEEEEEC
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE---------EEE-Ee-------CCCCCcccEEEccCCCeEEEeCC
Confidence 3466788887655 445555667888888753211 111 10 11234578899985444444442
Q ss_pred --CCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEee-CCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceE
Q 008467 296 --DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF 372 (564)
Q Consensus 296 --dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (564)
.+.|...+.+|.....+...-....+|++++++..|+.+. ..+.|...|+..... ..+.........+....+..|
T Consensus 143 g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~~~ly 221 (628)
T 4a0p_A 143 GGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQDYIY 221 (628)
T ss_dssp SSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEETTEEE
T ss_pred CCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEECCEEE
Confidence 4677777888765554443445568899999877776554 456788888865433 222222222233333334444
Q ss_pred EEEeCCCeEEEEE
Q 008467 373 ATSSTDNMIYVCK 385 (564)
Q Consensus 373 ~~~~~d~~i~~~~ 385 (564)
.+-...+.|...+
T Consensus 222 ~tD~~~~~I~~~d 234 (628)
T 4a0p_A 222 WTDWSRRSIERAN 234 (628)
T ss_dssp EEETTTTEEEEEE
T ss_pred EecCCCCEEEEEE
Confidence 4444444444444
No 313
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.09 E-value=1.1 Score=43.30 Aligned_cols=101 Identities=14% Similarity=0.133 Sum_probs=56.4
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC----CCEEEE
Q 008467 217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE----GTLLAT 292 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~----g~~l~s 292 (564)
.....++|.|+|+++++ ..+|.|++++ .++. . .+.... ...........|+++|+ +.+.++
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~----------~--~~~~~~-v~~~g~~g~~gia~~pdf~~~g~lyv~ 93 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGK----------K--LVASFD-VANVGEAGLLGLALHPEFPKKSWVYLY 93 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCE----------E--EEEECC-CCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCc----------e--Eeeccc-eeecCCCceeeEEeCCCCCcCCEEEEE
Confidence 45678999999986665 5568888886 2221 0 011111 01111245789999997 444444
Q ss_pred EeC---C----CeEEEEECCCc------ee---Eeec---CCCCCEEEEEeCCCCCEEEEe
Q 008467 293 GSY---D----GQARIWSTNGD------LK---CTLS---KHKGPIFSLKWNKKGDYLLTG 334 (564)
Q Consensus 293 g~~---d----g~i~vw~~~~~------~~---~~~~---~h~~~V~~l~~~~~~~~l~s~ 334 (564)
-+. + +.|..|+..+. .. ..+. .|. ...|.|.|+|...++.
T Consensus 94 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 94 ASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITT 152 (354)
T ss_dssp EEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEEC
T ss_pred EeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEE
Confidence 332 2 45666665432 11 1122 232 2568999999866664
No 314
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.86 E-value=0.96 Score=45.45 Aligned_cols=109 Identities=10% Similarity=0.126 Sum_probs=60.9
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee--eeeccc------ccccEEEEEEccCCCCCCCCCCcEEEEEEeC-
Q 008467 400 GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDLRE------HSKEIYTIRWSPTGSGTNNPNQQLILASASF- 470 (564)
Q Consensus 400 ~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~--~~~~~~------~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~- 470 (564)
.....++|.|+|+++++-...+.|++++..++.. +..+.. .......|+|+|+-. .+..++++....
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~----~~g~lYv~~s~~~ 102 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFK----NNPYIYISGTFKN 102 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTT----TSCEEEEEEEEEC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcC----cCCEEEEEEeccc
Confidence 3567899999999887655445788887654432 222221 234567899998521 112234433220
Q ss_pred ----------CCeEEEEeCCCC-------eEEEE-EeC-CCCCEEEEEEcCCCCEEEEEeC
Q 008467 471 ----------DSTVKLWDVELG-------KLLYS-LNG-HREPVYSLAFSPTGEYLASGSL 512 (564)
Q Consensus 471 ----------dg~i~iwd~~~~-------~~~~~-~~~-h~~~i~~~~~spdg~~lasgs~ 512 (564)
...|.-|+...+ +.+.. +.. .......|+|.|||.++++.+.
T Consensus 103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 124544544321 22222 221 1124689999999998777553
No 315
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.69 E-value=0.48 Score=44.48 Aligned_cols=210 Identities=11% Similarity=0.109 Sum_probs=100.6
Q ss_pred CcEEEEECCCcceeEEEeeccc-CeEEEEcCCCceEEEEeCC-----CeEEEEEcCCCc---e--eeEecCCCcceEEEE
Q 008467 338 KTAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSSTD-----NMIYVCKIGENR---P--IKTFAGHQGEVNCVK 406 (564)
Q Consensus 338 ~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~---~--~~~~~~h~~~i~~v~ 406 (564)
..+.+||+.+.+|...-..... ....+...++..++.++.+ ..+++++..+.. - +..+........++.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~ 110 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT 110 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence 3688899988877653221111 1112222345566666543 357888876654 1 111111111222233
Q ss_pred ECCCCCEEEEEeCCC-----cEEEEeCCCCeeee--ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeE
Q 008467 407 WDPTGSLLASCSDDV-----TAKIWNMKQDKYVH--DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STV 474 (564)
Q Consensus 407 ~~~~~~~las~s~dg-----~i~iwd~~~~~~~~--~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-----g~i 474 (564)
+ ++++++.|+.++ .+.+||..+..... .+.........+.+ + +. +++.|+.+ ..+
T Consensus 111 ~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~--------~~-iyv~GG~~~~~~~~~~ 177 (301)
T 2vpj_A 111 L--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--S--------GV-IYCLGGYDGLNILNSV 177 (301)
T ss_dssp E--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--T--------TE-EEEECCBCSSCBCCCE
T ss_pred E--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--C--------CE-EEEECCCCCCcccceE
Confidence 3 577777776543 57788877655322 11110000111111 1 12 44445443 458
Q ss_pred EEEeCCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeEEEEEecC-CCEEEEEEccCCC
Q 008467 475 KLWDVELGKLLYS--LNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGD 546 (564)
Q Consensus 475 ~iwd~~~~~~~~~--~~~h~~~i~~~~~spdg~~lasgs~d-----g~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~ 546 (564)
.+||+.+.+-... +.........+.+ +++.++.|+.+ ..|.+||..+.+-...-... ......+..-+++
T Consensus 178 ~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~ 255 (301)
T 2vpj_A 178 EKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGR 255 (301)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTE
T ss_pred EEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCE
Confidence 8889876643211 1111111122333 56777777764 46899999877543221111 1111111122566
Q ss_pred EEEEEEcC-----CcEEEEEe
Q 008467 547 KIAACFAN-----HTVCVLDF 562 (564)
Q Consensus 547 ~la~~~~~-----~~v~v~~~ 562 (564)
.++.|..+ ..+.+||.
T Consensus 256 i~v~GG~~~~~~~~~v~~yd~ 276 (301)
T 2vpj_A 256 LYAIAGYDGNSLLSSIECYDP 276 (301)
T ss_dssp EEEECCBCSSSBEEEEEEEET
T ss_pred EEEEcCcCCCcccccEEEEcC
Confidence 66776544 24566665
No 316
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.67 E-value=0.72 Score=43.27 Aligned_cols=222 Identities=15% Similarity=0.157 Sum_probs=105.3
Q ss_pred CCEEEEEeCC----CeEEEEECCCceeEeecCCCC---CEEEEEeCCCCCEEEEeeCC-----CcEEEEECCCcceeEEE
Q 008467 287 GTLLATGSYD----GQARIWSTNGDLKCTLSKHKG---PIFSLKWNKKGDYLLTGSCD-----KTAIVWDVKTEEWKQQF 354 (564)
Q Consensus 287 g~~l~sg~~d----g~i~vw~~~~~~~~~~~~h~~---~V~~l~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~ 354 (564)
+.+++.|+.+ ..+.++|.....-..+..... .-..+.. ++..++.|+.+ ..+.+||+.+.+|...-
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 3455555543 356677765443322211111 1111222 45566677654 35889999988876643
Q ss_pred eecccC-eEEEEcCCCceEEEEeCCC-----eEEEEEcCCCcee--eEecCCCcceEEEEECCCCCEEEEEeCC------
Q 008467 355 EFHSGP-TLDVDWRNNVSFATSSTDN-----MIYVCKIGENRPI--KTFAGHQGEVNCVKWDPTGSLLASCSDD------ 420 (564)
Q Consensus 355 ~~~~~~-~~~~~~~~~~~~~~~~~d~-----~i~~~~~~~~~~~--~~~~~h~~~i~~v~~~~~~~~las~s~d------ 420 (564)
...... ...+...++..++.++.++ .+.+++..+..-. ..+........++.+ ++++++.|+.+
T Consensus 94 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~ 171 (302)
T 2xn4_A 94 NMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQC 171 (302)
T ss_dssp CCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEE
T ss_pred CCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCcc
Confidence 221111 1122223555666665432 4667776654311 111111111222333 56777776643
Q ss_pred -CcEEEEeCCCCeeeee--cccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeEEEEeCCCCeEEE--EEeC
Q 008467 421 -VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELGKLLY--SLNG 490 (564)
Q Consensus 421 -g~i~iwd~~~~~~~~~--~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~--~~~~ 490 (564)
..+.+||..+...... +.........+.+ + + .+++.|+.+ ..+.+||+.+.+=.. .+..
T Consensus 172 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~--------~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~ 240 (302)
T 2xn4_A 172 LSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--N--------N-LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM 240 (302)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T--------T-EEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred ccEEEEEeCCCCcEEECCCCccccccccEEEE--C--------C-EEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCC
Confidence 3478888876654321 1111001111111 1 1 245555543 368899988764221 1111
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCe
Q 008467 491 HREPVYSLAFSPTGEYLASGSLDK-----SMHIWSLKEGK 525 (564)
Q Consensus 491 h~~~i~~~~~spdg~~lasgs~dg-----~i~iw~~~~~~ 525 (564)
.......+.+ +++.++.|+.++ .|.+||..+.+
T Consensus 241 ~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 241 CRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred ccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 1111122222 677777777653 48888887654
No 317
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.38 E-value=1.3 Score=41.50 Aligned_cols=221 Identities=9% Similarity=0.080 Sum_probs=108.3
Q ss_pred CEEEEEeCC--CeEEEEECCCceeEeecC---CCCCEEEEEeCCCCCEEEEeeCC----CcEEEEECCCcceeEEEeecc
Q 008467 288 TLLATGSYD--GQARIWSTNGDLKCTLSK---HKGPIFSLKWNKKGDYLLTGSCD----KTAIVWDVKTEEWKQQFEFHS 358 (564)
Q Consensus 288 ~~l~sg~~d--g~i~vw~~~~~~~~~~~~---h~~~V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~~~~~~~~~~~~ 358 (564)
.+++.|+.+ ..+.+||.....-..+.. ....-..+. -++..++.|+.+ ..+.+||+.+.+|...-....
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 455566653 567788866543322211 111111222 245566677655 678899999988765433221
Q ss_pred cC-eEEEEcCCCceEEEEeCC------CeEEEEEcCCCceee--EecCCCcceEEEEECCCCCEEEEEeC---------C
Q 008467 359 GP-TLDVDWRNNVSFATSSTD------NMIYVCKIGENRPIK--TFAGHQGEVNCVKWDPTGSLLASCSD---------D 420 (564)
Q Consensus 359 ~~-~~~~~~~~~~~~~~~~~d------~~i~~~~~~~~~~~~--~~~~h~~~i~~v~~~~~~~~las~s~---------d 420 (564)
.. ...+...++..++.++.+ ..+++++..+..=.. .+........++.+ ++++++.|+. -
T Consensus 91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 168 (306)
T 3ii7_A 91 PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVL 168 (306)
T ss_dssp CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEEC
T ss_pred cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCccccc
Confidence 11 112222355566666544 357788876653111 11111111122222 5677777654 2
Q ss_pred CcEEEEeCCCCeeeee--cccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeEEEEeCCCCeEE--EEEeCC
Q 008467 421 VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELGKLL--YSLNGH 491 (564)
Q Consensus 421 g~i~iwd~~~~~~~~~--~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~--~~~~~h 491 (564)
..+.+||..+...... +.........+.. . +. +++.|+.+ ..+.+||+.+.+=. ..+...
T Consensus 169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~--------~~-i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~ 237 (306)
T 3ii7_A 169 NSCEVYDPATETWTELCPMIEARKNHGLVFV--K--------DK-IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK 237 (306)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T--------TE-EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC
T ss_pred ceEEEeCCCCCeEEECCCccchhhcceEEEE--C--------CE-EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC
Confidence 3477888877654321 1110000011111 1 12 44444432 35788898765421 111111
Q ss_pred CCCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCe
Q 008467 492 REPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGK 525 (564)
Q Consensus 492 ~~~i~~~~~spdg~~lasgs~d-----g~i~iw~~~~~~ 525 (564)
......+.+ ++++++.|+.+ ..|.+||..+.+
T Consensus 238 r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 238 GVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp BSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred ccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 122233333 67788888754 468889988764
No 318
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.09 E-value=2.2 Score=40.71 Aligned_cols=188 Identities=12% Similarity=0.134 Sum_probs=102.8
Q ss_pred CEEEEEeCCCeEEEEEC-CCceeEeecCC-CCCEEEEEeC--CCCCEEEEe--eCCCcEEEEECCCcceeEEEeec----
Q 008467 288 TLLATGSYDGQARIWST-NGDLKCTLSKH-KGPIFSLKWN--KKGDYLLTG--SCDKTAIVWDVKTEEWKQQFEFH---- 357 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~-~~~~~~~~~~h-~~~V~~l~~~--~~~~~l~s~--s~D~~v~iwd~~~~~~~~~~~~~---- 357 (564)
.+++.++.||.|.-.|. +|+.+..+... ..++....-. +.+..++.+ +.||.+..+|..+|.....+...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46788899999999985 46666665433 1333332111 112244433 68999999999888655433321
Q ss_pred ccCeEE-EE--------cCCCceEEEEeCCCeEEEEEcCCCceeeEecCCC--c-----ceEEEEEC-----CCCCEEEE
Q 008467 358 SGPTLD-VD--------WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ--G-----EVNCVKWD-----PTGSLLAS 416 (564)
Q Consensus 358 ~~~~~~-~~--------~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~--~-----~i~~v~~~-----~~~~~las 416 (564)
..+... .. -..+..+.+++.++.++..+..+++.+..+.... + ...|.... -.+..|+.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 112221 00 0145567788899999999999999888776321 1 11122211 12345667
Q ss_pred EeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCC-------CCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE
Q 008467 417 CSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSG-------TNNPNQQLILASASFDSTVKLWDVELGKLLY 486 (564)
Q Consensus 417 ~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~-------~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 486 (564)
+..+..+.+.+ ++++ +..+ ..-.|.+.... ....+.. + +.++.||.|.-+|..+|+.++
T Consensus 171 g~~~y~v~~~~-~sG~-~W~~-------~~s~~~~~~~~~~~~~~~~~s~Dg~-~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA-SYNV-------TYSTWQQNVLDVPLALQNTFSKDGM-C-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECEECC-TTSC-CCCC-------EEEEEECCTTTHHHHTTCSSCSSSC-C-EEEETTTEEEEECSTTCCEEE
T ss_pred ecceEEEEEEC-CCCC-eEEE-------ecccccccccccccccccccccCCc-E-EEECCCCEEEEEECCCCcEEE
Confidence 77776666655 3332 1111 11123222110 0001122 2 347899999999999999887
No 319
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.00 E-value=0.18 Score=48.29 Aligned_cols=195 Identities=12% Similarity=0.028 Sum_probs=103.1
Q ss_pred CEEEEeeCCCcEEEEECCCcceeEEEeecc-cCeEEEEcC----CCceEEEE-eCCCeEEEEEcCCCceeeEecC----C
Q 008467 329 DYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-GPTLDVDWR----NNVSFATS-STDNMIYVCKIGENRPIKTFAG----H 398 (564)
Q Consensus 329 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~-~~d~~i~~~~~~~~~~~~~~~~----h 398 (564)
..++.++.||.|.-.|..+|+.+-++.... .+.+...-. ++..++.. ..||.++.++..++.....+.- .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 468899999999999999998877766541 233322111 22334443 6899999998876643322211 1
Q ss_pred CcceEE---EEE-C----CCCCEEEEEeCCCcEEEEeCCCCeeeeecccccc--cE---EEEEEccCCCCCCCCCCcEEE
Q 008467 399 QGEVNC---VKW-D----PTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK--EI---YTIRWSPTGSGTNNPNQQLIL 465 (564)
Q Consensus 399 ~~~i~~---v~~-~----~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~--~i---~~i~~~p~~~~~~~~~~~~~l 465 (564)
..++.. ... . ..+..+++|+.+|.+...|..+++.+..+..... .+ ...+.... .. ........+
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~-d~-~~d~~~~~v 168 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEE-KI-KLQECENMI 168 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC----------------------CCEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccc-cc-ccccCCCeE
Confidence 111211 000 0 0355778999999999999999998877653211 00 00000000 00 000000134
Q ss_pred EEEeCCCeEEEEeCCCCeEEEEE-----eCCCCC--E-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 008467 466 ASASFDSTVKLWDVELGKLLYSL-----NGHREP--V-YSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 528 (564)
Q Consensus 466 ~s~s~dg~i~iwd~~~~~~~~~~-----~~h~~~--i-~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~ 528 (564)
..+..+..+.+.+ ++|+ ++.+ ...... + ..-.++.|+.+++ ++.||.|.-+|..+|+.+.
T Consensus 169 ~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~-~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 169 VIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIA-PFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEE-EETTTEEEEECSTTCCEEE
T ss_pred EEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEE-ECCCCEEEEEECCCCcEEE
Confidence 5556666666655 3443 2211 111000 0 0001123566644 7889999999998888765
No 320
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.93 E-value=0.65 Score=44.94 Aligned_cols=145 Identities=9% Similarity=0.091 Sum_probs=75.5
Q ss_pred ceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCe--eeeec----ccccccEEEEEEccCCCCCCCCCCcEEEEEEeC---
Q 008467 401 EVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDK--YVHDL----REHSKEIYTIRWSPTGSGTNNPNQQLILASASF--- 470 (564)
Q Consensus 401 ~i~~v~~~~~~~-~las~s~dg~i~iwd~~~~~--~~~~~----~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~--- 470 (564)
....++|.|+|+ +++ +...|.|++++..... .+..+ .........++++|+-. .+..++++....
T Consensus 19 ~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~----~~g~lYv~~~~~~~~ 93 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLI-TLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFA----QSRRIWLSYSEVGDD 93 (353)
T ss_dssp SEEEEEECSTTCCEEE-EETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHH----HHCEEEEEEEEECSS
T ss_pred CcEEEEEcCCCCEEEE-EeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCC----CCCEEEEEEeCCCCC
Confidence 456899999999 665 4567999999854221 11111 11123467899988510 001233332221
Q ss_pred ---CCeEEEEeCCCC--e-----EEEE-Ee---CCCCCEEEEEEcCCCCEEEEEeCC-------------CcEEEEeCCC
Q 008467 471 ---DSTVKLWDVELG--K-----LLYS-LN---GHREPVYSLAFSPTGEYLASGSLD-------------KSMHIWSLKE 523 (564)
Q Consensus 471 ---dg~i~iwd~~~~--~-----~~~~-~~---~h~~~i~~~~~spdg~~lasgs~d-------------g~i~iw~~~~ 523 (564)
...|..|++..+ . .+.. +. ........|+|.|||.++++-+.. |.|.-++..
T Consensus 94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d- 172 (353)
T 2g8s_A 94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ- 172 (353)
T ss_dssp SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT-
T ss_pred CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC-
Confidence 234555655432 1 1111 11 001113579999999766665432 456666654
Q ss_pred Ce-------------EEEEEe-cCCCEEEEEEcc-CCCEEEEE
Q 008467 524 GK-------------IVKTYT-GNGGIFEVCWNK-EGDKIAAC 551 (564)
Q Consensus 524 ~~-------------~~~~~~-~~~~i~~~~w~~-~g~~la~~ 551 (564)
|+ ....+. +......++|+| +|+..++-
T Consensus 173 G~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d 215 (353)
T 2g8s_A 173 GEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNE 215 (353)
T ss_dssp SCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEE
T ss_pred CCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEe
Confidence 22 111222 233478999999 56555543
No 321
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.87 E-value=2.6 Score=39.63 Aligned_cols=219 Identities=11% Similarity=0.110 Sum_probs=102.0
Q ss_pred EEEEEeCCCeEEEEECCCceeEe--ecCC-CCCEEEEEeCCCCCEEEEeeC----C-------CcEEEEECCCcceeEEE
Q 008467 289 LLATGSYDGQARIWSTNGDLKCT--LSKH-KGPIFSLKWNKKGDYLLTGSC----D-------KTAIVWDVKTEEWKQQF 354 (564)
Q Consensus 289 ~l~sg~~dg~i~vw~~~~~~~~~--~~~h-~~~V~~l~~~~~~~~l~s~s~----D-------~~v~iwd~~~~~~~~~~ 354 (564)
+++.|+ ..+.+||.....-.. +... ...-.++. ..++..++.|+. + ..+.+||+.+.+|...-
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLV-TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEE-CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEE-EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 344455 567888876543221 2111 11122232 346667777763 1 12778899988875532
Q ss_pred eecccC-eEEEEcCCCceEEEEeCC--------CeEEEEEcCCCce--eeEecCCCcceEEEEECCCCCEEEEEeC-C--
Q 008467 355 EFHSGP-TLDVDWRNNVSFATSSTD--------NMIYVCKIGENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSD-D-- 420 (564)
Q Consensus 355 ~~~~~~-~~~~~~~~~~~~~~~~~d--------~~i~~~~~~~~~~--~~~~~~h~~~i~~v~~~~~~~~las~s~-d-- 420 (564)
...... ...+...++..++.++.+ ..+++++..+.+= +..+........++. .++++++.|+. +
T Consensus 84 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 84 PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDR 161 (315)
T ss_dssp CBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTS
T ss_pred CCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCC
Confidence 211110 012222355566665521 3477777765431 111111111112222 25677777775 2
Q ss_pred ---CcEEEEeCCCCeeeee--cccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC-----eEEEEeCCCCeEEE--EE
Q 008467 421 ---VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS-----TVKLWDVELGKLLY--SL 488 (564)
Q Consensus 421 ---g~i~iwd~~~~~~~~~--~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~--~~ 488 (564)
..+.+||..+...... +.........+.+ + +. +++.|+.++ .+.+||+.+.+=.. .+
T Consensus 162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~--------~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 230 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--D--------GR-IIVAAGVTDTGLTSSAEVYSITDNKWAPFEAF 230 (315)
T ss_dssp CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T--------TE-EEEEEEECSSSEEEEEEEEETTTTEEEEECCC
T ss_pred cccceEEEEeCCCCeEEECCCCCCchhceEEEEE--C--------CE-EEEEeccCCCCccceEEEEECCCCeEEECCCC
Confidence 3578888876643321 1100000111111 1 22 444555443 57888988764221 11
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEeCCC--------------cEEEEeCCCCe
Q 008467 489 NGHREPVYSLAFSPTGEYLASGSLDK--------------SMHIWSLKEGK 525 (564)
Q Consensus 489 ~~h~~~i~~~~~spdg~~lasgs~dg--------------~i~iw~~~~~~ 525 (564)
...+.....+.+ ++++++.|+.++ .|.+||+.+.+
T Consensus 231 p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 231 PQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp SSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred CCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 111111122233 567777777642 36677877654
No 322
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.85 E-value=1.4 Score=41.13 Aligned_cols=211 Identities=14% Similarity=0.144 Sum_probs=98.3
Q ss_pred CcEEEEECCCcceeEEEeecccC-eEEEEcCCCceEEEEeCC-----CeEEEEEcCCCce--eeEecCCCcceEEEEECC
Q 008467 338 KTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTD-----NMIYVCKIGENRP--IKTFAGHQGEVNCVKWDP 409 (564)
Q Consensus 338 ~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~~--~~~~~~h~~~i~~v~~~~ 409 (564)
..+.+||+.+..|...-...... ...+...++..++.++.+ ..+++++..+..- +..+........++.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-- 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-- 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--
Confidence 35788888887766532211110 111222355566666533 3467777765431 1111111111222333
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCeeeee--cccccccEEEEEEccCCCCCCCCCCcEEEEEEeC-------CCeEE
Q 008467 410 TGSLLASCSDDV-----TAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASF-------DSTVK 475 (564)
Q Consensus 410 ~~~~las~s~dg-----~i~iwd~~~~~~~~~--~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~-------dg~i~ 475 (564)
++++++.|+.++ .+.+||..+...... +.........+.+ + +. +++.|+. -..+.
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~--------~~-iyv~GG~~~~~~~~~~~~~ 176 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--G--------GL-LYAVGGYDVASRQCLSTVE 176 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--T--------TE-EEEECCEETTTTEECCCEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--C--------CE-EEEEeCCCCCCCccccEEE
Confidence 567777777553 467788776654321 1110000111111 1 12 3344433 23588
Q ss_pred EEeCCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeEEEEEecCC-CEEEEEEccCCCE
Q 008467 476 LWDVELGKLLY--SLNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDK 547 (564)
Q Consensus 476 iwd~~~~~~~~--~~~~h~~~i~~~~~spdg~~lasgs~d-----g~i~iw~~~~~~~~~~~~~~~-~i~~~~w~~~g~~ 547 (564)
+||+.+.+=.. .+.........+.+ ++++++.|+.+ ..+.+||..+.+-...-.... ....-+..-+++.
T Consensus 177 ~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i 254 (302)
T 2xn4_A 177 CYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLL 254 (302)
T ss_dssp EEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEE
T ss_pred EEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEE
Confidence 88887664221 11111111122233 67777888764 368899998765332211110 0111111125667
Q ss_pred EEEEEcCC-----cEEEEEee
Q 008467 548 IAACFANH-----TVCVLDFR 563 (564)
Q Consensus 548 la~~~~~~-----~v~v~~~~ 563 (564)
++.|..++ .+.+||..
T Consensus 255 ~v~GG~~~~~~~~~v~~yd~~ 275 (302)
T 2xn4_A 255 YVVGGDDGSCNLASVEYYNPT 275 (302)
T ss_dssp EEECCBCSSSBCCCEEEEETT
T ss_pred EEECCcCCCcccccEEEEcCC
Confidence 77765443 47777753
No 323
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.83 E-value=2 Score=48.77 Aligned_cols=195 Identities=12% Similarity=0.206 Sum_probs=118.7
Q ss_pred eCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcC-CCceeeEecCCC---
Q 008467 324 WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQ--- 399 (564)
Q Consensus 324 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~--- 399 (564)
.+|..+.++-= ..+++.|+|+.+...+..+.+.. ++.=-.|.+...++.. ++..|+.|++. +..|++.|..|.
T Consensus 73 MnP~~~iiALr-ag~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~ 149 (1630)
T 1xi4_A 73 MNPASKVIALK-AGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLA 149 (1630)
T ss_pred cCCCcceEEEe-cCCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeEEE-cCCeEEEeccCCCCccHHHHhcchhcc
Confidence 45655544433 36799999999888777766644 4555577777665543 45679999996 456888777773
Q ss_pred -cceEEEEECCCCCEEEEEe-------CCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeC-
Q 008467 400 -GEVNCVKWDPTGSLLASCS-------DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF- 470 (564)
Q Consensus 400 -~~i~~v~~~~~~~~las~s-------~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~- 470 (564)
..|..-..+++.++++..+ -.|.+.+|+...+. .+.+.+|.+....+.. .|. +....+++-+..
T Consensus 150 ~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~--~~~----~~~~~l~~f~~~~ 222 (1630)
T 1xi4_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKM--EGN----AEESTLFCFAVRG 222 (1630)
T ss_pred cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheecc--CCC----CCCceEEEEEEec
Confidence 4566677788888876433 35778888865442 2345566654433332 221 111123333322
Q ss_pred --CCeEEEEeCCCC---eEEEE-------Ee--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 008467 471 --DSTVKLWDVELG---KLLYS-------LN--GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 528 (564)
Q Consensus 471 --dg~i~iwd~~~~---~~~~~-------~~--~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~ 528 (564)
.+.++|.++... ...+. +. .-.+-.-++..|+.-..+..-+.-|.|++||+.+|.++.
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence 267888887532 11111 00 011223456667776777778889999999999998653
No 324
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.81 E-value=1.5 Score=41.04 Aligned_cols=217 Identities=6% Similarity=-0.006 Sum_probs=104.5
Q ss_pred EEEEeeC--CCcEEEEECCCcceeEEEeecccC-eEEEEcCCCceEEEEeCC----CeEEEEEcCCCce--eeEecCCCc
Q 008467 330 YLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTD----NMIYVCKIGENRP--IKTFAGHQG 400 (564)
Q Consensus 330 ~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d----~~i~~~~~~~~~~--~~~~~~h~~ 400 (564)
.++.|+. ...+.+||+.+.+|...-...... -..+...++..++.++.+ ..+++++..+..- +..+.....
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 93 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRD 93 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCB
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcccc
Confidence 3445554 357899999998876542211110 112222355566666644 5677788766532 111111111
Q ss_pred ceEEEEECCCCCEEEEEeCC------CcEEEEeCCCCeeeee--cccccccEEEEEEccCCCCCCCCCCcEEEEEEeC--
Q 008467 401 EVNCVKWDPTGSLLASCSDD------VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASF-- 470 (564)
Q Consensus 401 ~i~~v~~~~~~~~las~s~d------g~i~iwd~~~~~~~~~--~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~-- 470 (564)
...++.+ ++++++.|+.+ ..+.+||..+...... +.........+.. + +. +++.|+.
T Consensus 94 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~--------~~-iyv~GG~~~ 160 (306)
T 3ii7_A 94 SLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--N--------GL-IYVCGGSLG 160 (306)
T ss_dssp SCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T--------TE-EEEECCEES
T ss_pred ceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--C--------CE-EEEECCCCC
Confidence 1222333 57777777765 3578888877654321 1100000011111 1 12 3334432
Q ss_pred -------CCeEEEEeCCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeEEEEEecC---
Q 008467 471 -------DSTVKLWDVELGKLLY--SLNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGKIVKTYTGN--- 533 (564)
Q Consensus 471 -------dg~i~iwd~~~~~~~~--~~~~h~~~i~~~~~spdg~~lasgs~d-----g~i~iw~~~~~~~~~~~~~~--- 533 (564)
-..+.+||+.+.+=.. .+......-..+.+ ++++++.|+.+ ..+.+||..+.+-...-...
T Consensus 161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 238 (306)
T 3ii7_A 161 NNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKG 238 (306)
T ss_dssp CTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCB
T ss_pred CCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCc
Confidence 3458888988764221 11111111122223 66777777654 35889998876532211111
Q ss_pred CCEEEEEEccCCCEEEEEEcC-----CcEEEEEee
Q 008467 534 GGIFEVCWNKEGDKIAACFAN-----HTVCVLDFR 563 (564)
Q Consensus 534 ~~i~~~~w~~~g~~la~~~~~-----~~v~v~~~~ 563 (564)
.....+.. +++.+++|..+ ..+.+||..
T Consensus 239 ~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~ 271 (306)
T 3ii7_A 239 VTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTE 271 (306)
T ss_dssp SCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETT
T ss_pred cceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCC
Confidence 11122222 56677777543 356777753
No 325
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.69 E-value=1.5 Score=40.81 Aligned_cols=220 Identities=14% Similarity=0.040 Sum_probs=109.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEECC--CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467 277 DVTTLDWNGEGTLLATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 354 (564)
Q Consensus 277 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 354 (564)
.|..++-.....++ . . ||.+..|-.+ +++-. .......|..++.... +.+.-. ||.|..|-..........
T Consensus 25 ~i~~ia~G~~h~~~-l-~-~G~v~~wG~n~~Gqlg~-p~~~~~~i~~ia~G~~--hs~~l~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 25 GVDAIAGGYFHGLA-L-K-GGKVLGWGANLNGQLTM-PAATQSGVDAIAAGNY--HSLALK-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SCCEEEECSSEEEE-E-E-TTEEEEEECCSSSTTSC-CGGGGSCCCEEEECSS--EEEEEE-TTEEEEEECCTTSTTCCC
T ss_pred CCcEEEeCCCeEEE-E-E-CCEEEEEeCCCCCCCCC-CccCCCCEEEEEeCCC--EEEEEE-CCEEEEeeCCCCCCCCCC
Confidence 45666554433333 3 4 8999999754 22211 1112235666665443 222224 899999975432111100
Q ss_pred eecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee
Q 008467 355 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 434 (564)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~ 434 (564)
......+..+..-....++.. ++.++.|-......+..-......|..++......+++ . ||.+..|-......+
T Consensus 98 ~~~~~~v~~ia~G~~hs~al~--~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l--~-~G~v~~wG~n~~gql 172 (282)
T 3qhy_B 98 AEARSGVDAIAAGAWASYALK--DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV--K-NGGVIAWGDNYFGQT 172 (282)
T ss_dssp GGGSSSEEEEEEETTEEEEEE--TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE--E-TTEEEEEECCTTSTT
T ss_pred cccCCCeEEEECcCCEEEEEe--CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE--E-CCEEEEecCCCCCCC
Confidence 111224555555455555554 89999997654322111111234577777654433332 3 799999976543222
Q ss_pred eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCC
Q 008467 435 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK 514 (564)
Q Consensus 435 ~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg 514 (564)
..-......|..|+-... ..++. .||.|..|-....-.+..-......|..|+-.....+ |. . ||
T Consensus 173 g~p~~~~~~v~~i~~G~~----------hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~-al-~-~g 237 (282)
T 3qhy_B 173 TVPAEAQSGVDDVAGGIF----------HSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSL-AL-K-NG 237 (282)
T ss_dssp SCCGGGGSSEEEEEECSS----------EEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEE-EE-E-TT
T ss_pred CCceecCCCeEEEEecCC----------EEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEE-EE-E-CC
Confidence 111111345666654332 23444 4899999965431111100111234666765544333 33 3 89
Q ss_pred cEEEEeCCC
Q 008467 515 SMHIWSLKE 523 (564)
Q Consensus 515 ~i~iw~~~~ 523 (564)
.|+.|=...
T Consensus 238 ~v~~wG~n~ 246 (282)
T 3qhy_B 238 KVIAWGSSR 246 (282)
T ss_dssp EEEEESTTC
T ss_pred EEEEecCCC
Confidence 999997654
No 326
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=94.52 E-value=0.56 Score=45.94 Aligned_cols=124 Identities=12% Similarity=0.135 Sum_probs=76.0
Q ss_pred ceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCC--CCCceEEEEEeeccccccCCCCeEEEEECCC---CCEEEE
Q 008467 218 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQ--NGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE---GTLLAT 292 (564)
Q Consensus 218 ~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~---g~~l~s 292 (564)
.|..+..||+|++||.. ++..|.|-.++.+....... ..++.... .+..........+|..+.|+|- +..|++
T Consensus 67 ~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~t-y~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV 144 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFH-YSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV 144 (452)
T ss_dssp TTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEE-EEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred ceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCcccccccccceeE-EEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence 57789999999999987 46688888887543221100 01222111 1111111113578999999994 568999
Q ss_pred EeCCCeEEEEECCCce--eEeec---------CCCCCEEEEEeCCCCCEEEE--eeCCCcEEEE
Q 008467 293 GSYDGQARIWSTNGDL--KCTLS---------KHKGPIFSLKWNKKGDYLLT--GSCDKTAIVW 343 (564)
Q Consensus 293 g~~dg~i~vw~~~~~~--~~~~~---------~h~~~V~~l~~~~~~~~l~s--~s~D~~v~iw 343 (564)
-..|+.||+||..... ...+. .....|.+++|.+++-.|.. .+..|-|.-.
T Consensus 145 LtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 145 LKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 9999999999976411 01222 22256888899887755555 3366666543
No 327
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.52 E-value=1.1 Score=39.75 Aligned_cols=139 Identities=12% Similarity=0.040 Sum_probs=77.7
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccE--------EEEEEccCCCCCCCCCCcEEEEEEeCCC
Q 008467 401 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI--------YTIRWSPTGSGTNNPNQQLILASASFDS 472 (564)
Q Consensus 401 ~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i--------~~i~~~p~~~~~~~~~~~~~l~s~s~dg 472 (564)
.+..++|+|+|.+.+. .+|.+.-.+..+.... ........| .++.|.|+|. +.++ .||
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s~t~IG~~Gw~~F~a~~fD~~G~---------LYav--~dG 107 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND-NWMGRAKKIGNGGWNQFQFLFFDPNGY---------LYAV--SKD 107 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC-CHHHHCEEEECSCGGGCSEEEECTTSC---------EEEE--ETT
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcc-cccccccEecccccccceEEEECCCCC---------EEEe--CCC
Confidence 5669999999998777 6666555554332111 111111222 5677777764 2333 569
Q ss_pred eEEEEeCCC-CeEE-----EEE-eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe------EEEEEe-cC-CCEE
Q 008467 473 TVKLWDVEL-GKLL-----YSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK------IVKTYT-GN-GGIF 537 (564)
Q Consensus 473 ~i~iwd~~~-~~~~-----~~~-~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~------~~~~~~-~~-~~i~ 537 (564)
.|.-++.-+ +..- ..+ ..--..+..|.|.|+|.+.|.. |+.++-+....+. ....+- .. ....
T Consensus 108 ~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr 185 (236)
T 1tl2_A 108 KLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFK 185 (236)
T ss_dssp EEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEE
T ss_pred EEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEE
Confidence 998777532 1100 111 1112457999999999998877 7776444333211 011111 11 1234
Q ss_pred EEEEccCCCEEEEEEcCCcE
Q 008467 538 EVCWNKEGDKIAACFANHTV 557 (564)
Q Consensus 538 ~~~w~~~g~~la~~~~~~~v 557 (564)
.+.|.++|...++. ++.+
T Consensus 186 ~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 186 FLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp EEEECTTSCEEEEE--TTEE
T ss_pred EEEECCCCcEEEEe--CCeE
Confidence 57799999988887 6643
No 328
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=94.17 E-value=2.5 Score=39.66 Aligned_cols=224 Identities=13% Similarity=0.128 Sum_probs=106.8
Q ss_pred CCCCEEEEEeCC----CeEEEEECCCceeEeecCCCC---CEEEEEeCCCCCEEEEeeC----C-----CcEEEEECCCc
Q 008467 285 GEGTLLATGSYD----GQARIWSTNGDLKCTLSKHKG---PIFSLKWNKKGDYLLTGSC----D-----KTAIVWDVKTE 348 (564)
Q Consensus 285 ~~g~~l~sg~~d----g~i~vw~~~~~~~~~~~~h~~---~V~~l~~~~~~~~l~s~s~----D-----~~v~iwd~~~~ 348 (564)
-++.+++.|+.+ ..+.++|.....-..+..... .-..+.. ++..++.|+. + ..+.+||+.+.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 355677777642 367778866543332221111 1111222 4556666665 2 46889999988
Q ss_pred ceeEEEeecccC-eEEEEcCCCceEEEEeCC-----CeEEEEEcCCCcee--eEecCCCcceEEEEECCCCCEEEEEeCC
Q 008467 349 EWKQQFEFHSGP-TLDVDWRNNVSFATSSTD-----NMIYVCKIGENRPI--KTFAGHQGEVNCVKWDPTGSLLASCSDD 420 (564)
Q Consensus 349 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~~~--~~~~~h~~~i~~v~~~~~~~~las~s~d 420 (564)
+|...-...... ...+...++..++.++.+ ..+.+++..+..-. ..+......-.++.+ ++++++.|+.+
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 178 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFD 178 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred eEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCC
Confidence 876543221110 111222245555655432 34677777654311 111111111222333 56777777654
Q ss_pred -----CcEEEEeCCCCeeeee--cccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeEEEEeCCCCeEEE--
Q 008467 421 -----VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELGKLLY-- 486 (564)
Q Consensus 421 -----g~i~iwd~~~~~~~~~--~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~-- 486 (564)
..+.+||..+...... +.........+.+ + + .+++.|+.+ ..+.+||+.+.+=..
T Consensus 179 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~--------~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 247 (308)
T 1zgk_A 179 GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--H--------N-CIYAAGGYDGQDQLNSVERYDVETETWTFVA 247 (308)
T ss_dssp SSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T--------T-EEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred CCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--C--------C-EEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence 3578888876654321 1110000111111 1 1 244555543 468889988664221
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCe
Q 008467 487 SLNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGK 525 (564)
Q Consensus 487 ~~~~h~~~i~~~~~spdg~~lasgs~d-----g~i~iw~~~~~~ 525 (564)
.+.........+.+ ++++++.|+.+ ..|.+||..+.+
T Consensus 248 ~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 248 PMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 11111111122222 56777777754 357788887654
No 329
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=93.91 E-value=3.2 Score=38.98 Aligned_cols=178 Identities=8% Similarity=0.067 Sum_probs=86.2
Q ss_pred EEEeeCCCcEEEEECCCcceeEEEeec---ccCeEEEEcCCCceEEEEeC-----C------CeEEEEEcCCCce--eeE
Q 008467 331 LLTGSCDKTAIVWDVKTEEWKQQFEFH---SGPTLDVDWRNNVSFATSST-----D------NMIYVCKIGENRP--IKT 394 (564)
Q Consensus 331 l~s~s~D~~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----d------~~i~~~~~~~~~~--~~~ 394 (564)
++.|+ ..+.+||+.+++|.. .... ......+...++..++.++. . ..++.++..+.+- +..
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 34454 579999999998865 2221 11123344456666666652 1 1266677665431 111
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCC--------CcEEEEeCCCCeeee--ecccccccEEEEEEccCCCCCCCCCCcEE
Q 008467 395 FAGHQGEVNCVKWDPTGSLLASCSDD--------VTAKIWNMKQDKYVH--DLREHSKEIYTIRWSPTGSGTNNPNQQLI 464 (564)
Q Consensus 395 ~~~h~~~i~~v~~~~~~~~las~s~d--------g~i~iwd~~~~~~~~--~~~~~~~~i~~i~~~p~~~~~~~~~~~~~ 464 (564)
+.........+.+ ++++++.|+.+ ..+.+||..+.+... .+.........+.. . +. +
T Consensus 85 ~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~--------~~-i 151 (315)
T 4asc_A 85 LPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH--M--------DL-V 151 (315)
T ss_dssp BSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T--------TE-E
T ss_pred CCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE--C--------CE-E
Confidence 1111111122222 56777777632 357888887664322 11110000011111 1 12 4
Q ss_pred EEEEeC-C-----CeEEEEeCCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCeE
Q 008467 465 LASASF-D-----STVKLWDVELGKLLY--SLNGHREPVYSLAFSPTGEYLASGSLDK-----SMHIWSLKEGKI 526 (564)
Q Consensus 465 l~s~s~-d-----g~i~iwd~~~~~~~~--~~~~h~~~i~~~~~spdg~~lasgs~dg-----~i~iw~~~~~~~ 526 (564)
++.|+. + ..+.+||+.+.+=.. .+...+..-..+.+ +++.++.|+.++ .+.+||..+.+-
T Consensus 152 yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 224 (315)
T 4asc_A 152 YVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKW 224 (315)
T ss_dssp EEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred EEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeE
Confidence 444544 2 368888887654211 11111111122223 677788887654 588999887653
No 330
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.54 E-value=6.7 Score=39.21 Aligned_cols=102 Identities=10% Similarity=0.157 Sum_probs=58.1
Q ss_pred CEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee--------cccCeEEEEcCC-----CceEEEEeC-------
Q 008467 318 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF--------HSGPTLDVDWRN-----NVSFATSST------- 377 (564)
Q Consensus 318 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~-----~~~~~~~~~------- 377 (564)
..++|+|.|+|+.+++-...+.|++++..++........ .....+.+.+.+ ...+++.+.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 457899999998666654445788887655543322211 123355777763 344454432
Q ss_pred -----CCeEEEEEcCCC-------ceee-Eec-CCCcceEEEEECCCCCEEEEEeC
Q 008467 378 -----DNMIYVCKIGEN-------RPIK-TFA-GHQGEVNCVKWDPTGSLLASCSD 419 (564)
Q Consensus 378 -----d~~i~~~~~~~~-------~~~~-~~~-~h~~~i~~v~~~~~~~~las~s~ 419 (564)
...|..++.... +.+. .+. +.......|+|.|||.+.++.++
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235555554321 1111 122 12234688999999998887654
No 331
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.41 E-value=5.2 Score=37.56 Aligned_cols=107 Identities=10% Similarity=0.128 Sum_probs=53.1
Q ss_pred CCCCCEEEEeeC----CC-------cEEEEECCCcceeEEEeeccc-CeEEEEcCCCceEEEEeCC-------CeEEEEE
Q 008467 325 NKKGDYLLTGSC----DK-------TAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSSTD-------NMIYVCK 385 (564)
Q Consensus 325 ~~~~~~l~s~s~----D~-------~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d-------~~i~~~~ 385 (564)
..++..++.|+. ++ .+.+||+.+.+|...-..... ....+...++..++.++.+ ..+++++
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd 133 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYD 133 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEe
Confidence 345667777763 12 177889988887653221111 1112222355566666543 2466777
Q ss_pred cCCCceee--EecCCCcceEEEEECCCCCEEEEEeC------CCcEEEEeCCCCee
Q 008467 386 IGENRPIK--TFAGHQGEVNCVKWDPTGSLLASCSD------DVTAKIWNMKQDKY 433 (564)
Q Consensus 386 ~~~~~~~~--~~~~h~~~i~~v~~~~~~~~las~s~------dg~i~iwd~~~~~~ 433 (564)
..+.+=.. .+......-.++. .++++++.|+. -..+.+||..+...
T Consensus 134 ~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 134 PVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp TTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred CCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence 66543111 1111111111222 35677777764 23588889877654
No 332
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=93.33 E-value=13 Score=41.98 Aligned_cols=272 Identities=11% Similarity=0.102 Sum_probs=139.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEe-ecCCCCCEEEEEeCCC------CCEEEEeeC-CCcEEEEECC
Q 008467 276 KDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCT-LSKHKGPIFSLKWNKK------GDYLLTGSC-DKTAIVWDVK 346 (564)
Q Consensus 276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~-~~~h~~~V~~l~~~~~------~~~l~s~s~-D~~v~iwd~~ 346 (564)
..|...+.+. .+++.++ .+.+.++..+ +.+... -..-...|.|+++.|. +.+++.|.+ |++++|+++.
T Consensus 514 ~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~ 590 (1158)
T 3ei3_A 514 KNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP 590 (1158)
T ss_dssp CCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred CEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence 4466665543 4566665 5777777654 322211 1123568999998764 368899987 9999999998
Q ss_pred CcceeEEEeecc-cC---eEEEEcCCCceEEEEeCCCeEEEEEcCC--Ccee---eEecCCCcceEEEEECCCCCEEEEE
Q 008467 347 TEEWKQQFEFHS-GP---TLDVDWRNNVSFATSSTDNMIYVCKIGE--NRPI---KTFAGHQGEVNCVKWDPTGSLLASC 417 (564)
Q Consensus 347 ~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~d~~i~~~~~~~--~~~~---~~~~~h~~~i~~v~~~~~~~~las~ 417 (564)
+.+.+....... .. +.-+.+.....+..+-.||.+..+.++. +... ..+-| ..++.-..+...+..-+-+
T Consensus 591 ~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a 669 (1158)
T 3ei3_A 591 SFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFA 669 (1158)
T ss_dssp TCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEE
T ss_pred CCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEE
Confidence 766554333321 11 2222232334456677788876666543 2221 12333 2344333343333332222
Q ss_pred eCCCcEEEEeCCCCeeeeecccccccE-EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEEEeCCCCC
Q 008467 418 SDDVTAKIWNMKQDKYVHDLREHSKEI-YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYSLNGHREP 494 (564)
Q Consensus 418 s~dg~i~iwd~~~~~~~~~~~~~~~~i-~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~ 494 (564)
..+....++..+..-....+.. ..+ ....|+... .|+ -++. ..++.++|..+..-. .+.++. -...
T Consensus 670 ~s~rp~liy~~~~~l~~s~l~~--~~v~~~~~F~se~----~~~---g~v~-~~~~~LrI~~i~~~~~~~~~~ip-L~~T 738 (1158)
T 3ei3_A 670 CSDRPTVIYSSNHKLVFSNVNL--KEVNYMCPLNSDG----YPD---SLAL-ANNSTLTIGTIDEIQKLHIRTVP-LYES 738 (1158)
T ss_dssp ESSSCEEEEESSSSEEEEEBSS--SCCCEEEEECCSS----STT---EEEE-ECSSCEEEEEECCSSSEEEEEEE-CSSE
T ss_pred ECCCCEEEEEcCCceEEeccCh--HHhceEeccCccc----CCC---cEEE-EcCCceEEEEecccCCeeEEEEe-CCCC
Confidence 3344444554332211111111 122 222333211 121 1332 335669988765322 223332 2345
Q ss_pred EEEEEEcCCCCEEEEEeCC-------------------------------------------------CcEEEEeCCCCe
Q 008467 495 VYSLAFSPTGEYLASGSLD-------------------------------------------------KSMHIWSLKEGK 525 (564)
Q Consensus 495 i~~~~~spdg~~lasgs~d-------------------------------------------------g~i~iw~~~~~~ 525 (564)
+..++++|+.+.++.+..+ +.|++.|..+++
T Consensus 739 prri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~ 818 (1158)
T 3ei3_A 739 PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFE 818 (1158)
T ss_dssp EEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCC
T ss_pred ceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCe
Confidence 6788888877665443211 247777877777
Q ss_pred EEEEEec--CCCEEEEE---EccC-CCEEEEEE----------cCCcEEEEEe
Q 008467 526 IVKTYTG--NGGIFEVC---WNKE-GDKIAACF----------ANHTVCVLDF 562 (564)
Q Consensus 526 ~~~~~~~--~~~i~~~~---w~~~-g~~la~~~----------~~~~v~v~~~ 562 (564)
.+..+.- +..+.+++ +..+ ..+|++|. ..|.+.||++
T Consensus 819 ~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v 871 (1158)
T 3ei3_A 819 VLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQY 871 (1158)
T ss_dssp EEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEE
T ss_pred EEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEE
Confidence 7766643 33344433 4433 36888886 3467888876
No 333
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.19 E-value=3.1 Score=36.81 Aligned_cols=100 Identities=14% Similarity=0.088 Sum_probs=56.0
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeee------c-ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeE
Q 008467 402 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD------L-REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV 474 (564)
Q Consensus 402 i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~------~-~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i 474 (564)
..++.|+|+|.+.++ .||.|.-++-.+...-.- + ..-=..+..|.+.|+|. |.... |+.+
T Consensus 90 F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~----------Lyav~-dg~l 156 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY----------LYAVH-GQQF 156 (236)
T ss_dssp CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC----------EEEEE-TTEE
T ss_pred ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce----------EEEEe-CCcE
Confidence 467899999999887 458887777532111100 0 00114578899999884 44445 7875
Q ss_pred EEEeCCCCe------EEEEEe-CCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008467 475 KLWDVELGK------LLYSLN-GHREPVYSLAFSPTGEYLASGSLDKSM 516 (564)
Q Consensus 475 ~iwd~~~~~------~~~~~~-~h~~~i~~~~~spdg~~lasgs~dg~i 516 (564)
+-+..-++. ....+. ..-..-.-+.|+|+|...++. +|.+
T Consensus 157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 433322111 011111 222233446799999887765 6644
No 334
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=93.13 E-value=11 Score=40.47 Aligned_cols=312 Identities=11% Similarity=0.094 Sum_probs=163.7
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467 217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 296 (564)
Q Consensus 217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 296 (564)
..|.++.-.++|.+.+ |+..| +..++..++... .. ............|.++...+++..|..|+.
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~-----------~~-~~~~~~~~~~~~i~~i~~d~~~~~lWigt~- 210 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFE-----------GI-PLPVHSSQSNLFVNSLLEDTTRQCVWIGTE- 210 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEE-----------EE-CCCCCTTCSSCCEEEEEEETTTTEEEEEEE-
T ss_pred CeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceE-----------Ee-cCCCccccccceeEEEEEECCCCEEEEEEC-
Confidence 4578888888888665 34444 556665433210 00 000000111235888888877765555554
Q ss_pred CeEEEEECCCceeEeec-CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee-------cccCeEEEEcCC
Q 008467 297 GQARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF-------HSGPTLDVDWRN 368 (564)
Q Consensus 297 g~i~vw~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~ 368 (564)
+-+..++........+. .....|.++.-.++|...+ |+. +-+.+++..++.+...... ....+.++.-..
T Consensus 211 ~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~ 288 (758)
T 3ott_A 211 GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQ 288 (758)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECT
T ss_pred CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcC
Confidence 45777776544322221 1234588888777776554 443 4588888877654332111 112244443333
Q ss_pred CceEEEEeCCCeEEEEEcCCCceeeEec-------CCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe--eeeecc-
Q 008467 369 NVSFATSSTDNMIYVCKIGENRPIKTFA-------GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK--YVHDLR- 438 (564)
Q Consensus 369 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~-------~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~--~~~~~~- 438 (564)
+..+-.++..| +.+.... .....+. .....|.++.-..+|.+-+ |+.+| +..++..++. ....+.
T Consensus 289 ~g~lWiGT~~G-l~~~~~~--~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~~~~~ 363 (758)
T 3ott_A 289 EHNIWLGTDYG-ISLSRYN--SALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAIWYRM 363 (758)
T ss_dssp TCCEEEEESSS-EEEECCC--C-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCEEECT
T ss_pred CCCEEEEeCCc-ccccccC--CceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeEEecc
Confidence 33333333344 3333221 1111111 1124688888888888754 45555 5556654321 111111
Q ss_pred ------cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE-eC-----CCCCEEEEEEcCCCCE
Q 008467 439 ------EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NG-----HREPVYSLAFSPTGEY 506 (564)
Q Consensus 439 ------~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~-----h~~~i~~~~~spdg~~ 506 (564)
.....|.++.-..++. +++ |+ ++-+..+|..+++...-. .. ....|.++...++|.+
T Consensus 364 ~~~~~~l~~~~v~~i~~d~~g~--------lWi--gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l 432 (758)
T 3ott_A 364 GDKTYPLSHNRIRHIYEDKEQQ--------LWI--AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQL 432 (758)
T ss_dssp TCSSSCCSCSCEEEEEECTTSC--------EEE--EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEE
T ss_pred CCcCCCCCCCceEEEEECCCCC--------EEE--Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCE
Confidence 0123477776655443 344 44 456899999877654321 11 1245889988888876
Q ss_pred EEEEeCCCcEEEEeCCC------CeEE--EEEec-----CCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 507 LASGSLDKSMHIWSLKE------GKIV--KTYTG-----NGGIFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 507 lasgs~dg~i~iw~~~~------~~~~--~~~~~-----~~~i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
.+ |+..+-|.+++..+ +... ..+.. ...|.++.-+++|+.-++++.++.+..+|.
T Consensus 433 Wi-gT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~ 500 (758)
T 3ott_A 433 WI-STCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINP 500 (758)
T ss_dssp EE-EESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEET
T ss_pred EE-EECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeC
Confidence 55 55554588888542 1221 23321 124889999999987663333445777664
No 335
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=92.62 E-value=6.9 Score=36.89 Aligned_cols=233 Identities=12% Similarity=0.151 Sum_probs=129.5
Q ss_pred ECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC-cceeEEEeeccc--
Q 008467 283 WNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQQFEFHSG-- 359 (564)
Q Consensus 283 ~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~-- 359 (564)
.+|..+.+|.-. ...+.|++.+.+.+..-.....+|.--+|-.....-+.. +..|.-|++.. ....+.|..|..
T Consensus 74 MnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT--~taVyHWs~~~~s~P~kvFdR~~~L~ 150 (365)
T 2xzh_A 74 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT--DNAVYHWSMEGESQPVKMFDRHSSLA 150 (365)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEEE--SSEEEEEESSTTCCCEEEEECCGGGT
T ss_pred eCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCCeEEEEc--CCcEEEEcccCCCCCceeeecchhcc
Confidence 466667777665 678999999877554333345688888997665443332 46899999864 344555655442
Q ss_pred --CeEEEEcCCCce--EEEE--eC----CCeEEEEEcCCCceeeEecCCCcceEEEEECCC---CCEEEEEeC---CCcE
Q 008467 360 --PTLDVDWRNNVS--FATS--ST----DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT---GSLLASCSD---DVTA 423 (564)
Q Consensus 360 --~~~~~~~~~~~~--~~~~--~~----d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~---~~~las~s~---dg~i 423 (564)
.++......+.. .+.+ .. .|.+.+|.... +..+.+.||.+....+....+ .++++-+.. -+++
T Consensus 151 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kL 229 (365)
T 2xzh_A 151 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 229 (365)
T ss_dssp TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEE
T ss_pred cceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEE
Confidence 233332222221 1221 12 24566777654 344667888766544433211 123433333 2578
Q ss_pred EEEeCCCCe-eeeecccccccEEEEEEccCCCCCC------CCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEE
Q 008467 424 KIWNMKQDK-YVHDLREHSKEIYTIRWSPTGSGTN------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY 496 (564)
Q Consensus 424 ~iwd~~~~~-~~~~~~~~~~~i~~i~~~p~~~~~~------~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~ 496 (564)
+|-++.... -. .........+-|.|+....+ ++. .-++..-..-|.|.+||++++.+++.-+-...+|.
T Consensus 230 hIiEi~~~~~~~---~~f~kk~vdi~fppea~~DFPVamqvs~k-ygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF 305 (365)
T 2xzh_A 230 HIIEVGTPPTGN---QPFPKKAVDVFFPPEAQNDFPVAMQISEK-HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 305 (365)
T ss_dssp EEEECSSCCTTC---CCCCCEEEEECCCTTCTTCCEEEEEEETT-TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred EEEEcCCCCCCC---CCcccccceeeCCccccCCceEEEEeccc-CCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceE
Confidence 888774320 00 11122234444544322111 011 11344556789999999999999988877777777
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 008467 497 SLAFSPTGEYLASGSLDKSMHIWSLKE 523 (564)
Q Consensus 497 ~~~~spdg~~lasgs~dg~i~iw~~~~ 523 (564)
..+.+....-++.....|.|.--.+..
T Consensus 306 ~ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 306 VTAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp EEEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred EecccCCCCcEEEEcCCCEEEEEEECc
Confidence 666655544455555666655544443
No 336
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=92.17 E-value=3.7 Score=39.32 Aligned_cols=91 Identities=13% Similarity=0.117 Sum_probs=45.7
Q ss_pred CCCEEEEEeCC-CeEEEEECCC--ceeEeecCC----CCCEEEEEeCCCCCEEEEeeC-C---------CcEEEEECCCc
Q 008467 286 EGTLLATGSYD-GQARIWSTNG--DLKCTLSKH----KGPIFSLKWNKKGDYLLTGSC-D---------KTAIVWDVKTE 348 (564)
Q Consensus 286 ~g~~l~sg~~d-g~i~vw~~~~--~~~~~~~~h----~~~V~~l~~~~~~~~l~s~s~-D---------~~v~iwd~~~~ 348 (564)
++.+++.|+.+ ..+.++|... ..-..+..- ...-.++.+ ++..++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 56666777654 4677778652 211222111 111112222 4556666665 2 46889999998
Q ss_pred ceeEEEeec-cc-CeEEEEcCCCceEEEEeCC
Q 008467 349 EWKQQFEFH-SG-PTLDVDWRNNVSFATSSTD 378 (564)
Q Consensus 349 ~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~d 378 (564)
+|...-... .. ....+...++..++.++.+
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 877643322 11 1111222455666666643
No 337
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=91.79 E-value=6.9 Score=44.60 Aligned_cols=233 Identities=12% Similarity=0.148 Sum_probs=117.7
Q ss_pred ECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc-ceeEEEeecc---
Q 008467 283 WNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHS--- 358 (564)
Q Consensus 283 ~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~--- 358 (564)
.+|..+.+|.-. ..++.|++.+.+.+..-.....+|.--+|-.....-+.. +..|.-|++... ...+.|..|.
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT--~~aVyHW~~~~~s~P~k~fdR~~~L~ 149 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT--DNAVYHWSMEGESQPVKMFDRHSSLA 149 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEc--CCeEEEeccCCCCccHHHHhcchhcc
Confidence 455556665554 578999998755433222334578888887655442222 468999998642 2223333332
Q ss_pred -cCeEEEEcCCCc--eEEEE------eCCCeEEEEEcCCCceeeEecCCCcceEEEEEC--CC-CCEEEEEeC---CCcE
Q 008467 359 -GPTLDVDWRNNV--SFATS------STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD--PT-GSLLASCSD---DVTA 423 (564)
Q Consensus 359 -~~~~~~~~~~~~--~~~~~------~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~-~~~las~s~---dg~i 423 (564)
..++......+. ..++| ...|.+.++.+..+ ..+.+.||.+....+... +. .++++-+.. .+.+
T Consensus 150 ~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kL 228 (1630)
T 1xi4_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 228 (1630)
T ss_pred cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceE
Confidence 223222222221 11221 13456667766443 234566776655444332 11 223332222 2678
Q ss_pred EEEeCCCC-eeeeecccccccEEEEEEccCCCCCC------CCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEE
Q 008467 424 KIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTN------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY 496 (564)
Q Consensus 424 ~iwd~~~~-~~~~~~~~~~~~i~~i~~~p~~~~~~------~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~ 496 (564)
+|-++... .-. .........+-|.|+....+ ++.. -++..-+.-|.|.++|+.+|.+++.-+-...+|.
T Consensus 229 hi~Ei~~~~~~~---~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~-g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF 304 (1630)
T 1xi4_A 229 HIIEVGTPPTGN---QPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 304 (1630)
T ss_pred EEEecCCCccCC---CCCccccccccCCcccccCcceEEEecccc-CEEEEEecCceEEEEecccchhhhhccccCCceE
Confidence 88776432 000 11122234444544322111 1111 1344556779999999999999877665556666
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 008467 497 SLAFSPTGEYLASGSLDKSMHIWSLKE 523 (564)
Q Consensus 497 ~~~~spdg~~lasgs~dg~i~iw~~~~ 523 (564)
..+.++...-++.....|.|.--.+..
T Consensus 305 ~~~~~~~~~g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 305 VTAPHEATAGIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred EeccCCCCCceEEEcCCceEEEEEEcc
Confidence 655544433333344555554444443
No 338
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=91.66 E-value=16 Score=39.08 Aligned_cols=266 Identities=9% Similarity=0.060 Sum_probs=145.8
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeec--C----CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc
Q 008467 275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS--K----HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 348 (564)
Q Consensus 275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~--~----h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~ 348 (564)
...|.++....+|.+.+ |+.. -+..++........+. . ....|.++...+++..|..|+. +-+..+|..++
T Consensus 145 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~ 221 (758)
T 3ott_A 145 NNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG 221 (758)
T ss_dssp CSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC
Confidence 35688888888888765 4444 4667776544332221 1 1234888887777765555553 45888998877
Q ss_pred ceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecC--------CCcceEEEEECCCCCEEEEEeCC
Q 008467 349 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG--------HQGEVNCVKWDPTGSLLASCSDD 420 (564)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--------h~~~i~~v~~~~~~~~las~s~d 420 (564)
.+..........+.++.-..+..+..++. +-+++++...... ..+.. ....|.++..+.+|.+- .|+..
T Consensus 222 ~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-iGT~~ 298 (758)
T 3ott_A 222 QIKQTEAFHNNSIKSLALDGNGDLLAGTD-NGLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQEHNIW-LGTDY 298 (758)
T ss_dssp EEEEEEEEEEEEEEEEEECTTCCEEEEET-TEEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECTTCCEE-EEESS
T ss_pred eEEeccCCCCCeEEEEEEcCCCCEEEEeC-CceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcCCCCEE-EEeCC
Confidence 65432222223344554444444444443 4567776654332 22211 12458899888888764 45555
Q ss_pred CcEEEEeCCCCeeeeecc-----cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEEEeC---
Q 008467 421 VTAKIWNMKQDKYVHDLR-----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYSLNG--- 490 (564)
Q Consensus 421 g~i~iwd~~~~~~~~~~~-----~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~--- 490 (564)
| +.++............ .....|.++.-...|. +++ |+.+| +..++..+++ ....+..
T Consensus 299 G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~--------lWi--Gt~~G-l~~~~~~~~~~~~~~~~~~~~~ 366 (758)
T 3ott_A 299 G-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGF--------YWF--GGANG-LIRFTDPAGERHDAIWYRMGDK 366 (758)
T ss_dssp S-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCC--------EEE--EETTE-EEEESCTTSSCCCCEEECTTCS
T ss_pred c-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCC--------EEE--eeCCc-ceeecccccccceeEEeccCCc
Confidence 6 5444322111111110 1123577777655543 343 44455 5566655431 1111210
Q ss_pred ----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe-------cCCCEEEEEEccCCCEEEEEEcCCcEEE
Q 008467 491 ----HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT-------GNGGIFEVCWNKEGDKIAACFANHTVCV 559 (564)
Q Consensus 491 ----h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~-------~~~~i~~~~w~~~g~~la~~~~~~~v~v 559 (564)
....|.++.-.++|++.+ |+. +-|..|+..+++...-.. ....|.++.-+++|+..+ |..++.+.+
T Consensus 367 ~~~l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~ 443 (758)
T 3ott_A 367 TYPLSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFV 443 (758)
T ss_dssp SSCCSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEE
T ss_pred CCCCCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEE
Confidence 123589999888887655 333 459999998876543221 123478888888886555 444445666
Q ss_pred EE
Q 008467 560 LD 561 (564)
Q Consensus 560 ~~ 561 (564)
+|
T Consensus 444 ~~ 445 (758)
T 3ott_A 444 VD 445 (758)
T ss_dssp EE
T ss_pred Ec
Confidence 65
No 339
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=91.61 E-value=8.9 Score=35.91 Aligned_cols=171 Identities=10% Similarity=0.107 Sum_probs=81.4
Q ss_pred cEEEEECCCcceeEEEeec---ccCeEEEEcCCCceEEEEeC----CC-------eEEEEEcCCCcee--eEecCCCcce
Q 008467 339 TAIVWDVKTEEWKQQFEFH---SGPTLDVDWRNNVSFATSST----DN-------MIYVCKIGENRPI--KTFAGHQGEV 402 (564)
Q Consensus 339 ~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----d~-------~i~~~~~~~~~~~--~~~~~h~~~i 402 (564)
.+.+||+.+.+|... ... ......+...++..++.++. ++ .+++++..+..=. ..+.......
T Consensus 25 ~~~~yd~~~~~W~~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 25 AAVAYDPMENECYLT-ALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEEETTTTEEEEE-EECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred ceEEECCCCCceecc-cCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 478899998888662 221 11123344456666666662 11 1666776554311 1111111112
Q ss_pred EEEEECCCCCEEEEEeCC-------CcEEEEeCCCCeeeeecccccccE--EEEEEccCCCCCCCCCCcEEEEEEeC---
Q 008467 403 NCVKWDPTGSLLASCSDD-------VTAKIWNMKQDKYVHDLREHSKEI--YTIRWSPTGSGTNNPNQQLILASASF--- 470 (564)
Q Consensus 403 ~~v~~~~~~~~las~s~d-------g~i~iwd~~~~~~~~~~~~~~~~i--~~i~~~p~~~~~~~~~~~~~l~s~s~--- 470 (564)
..+.+ ++++++.|+.+ ..+.+||..+.+....- ....+. .++.. .+ +. +++.|+.
T Consensus 104 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~-~~--------~~-iyv~GG~~~~ 170 (318)
T 2woz_A 104 GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK-NLPIKVYGHNVIS-HN--------GM-IYCLGGKTDD 170 (318)
T ss_dssp EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC-CCSSCEESCEEEE-ET--------TE-EEEECCEESS
T ss_pred ceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC-CCCCcccccEEEE-EC--------CE-EEEEcCCCCC
Confidence 22223 56777777754 24677888766543211 000000 01111 11 12 3344442
Q ss_pred ---CCeEEEEeCCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCe
Q 008467 471 ---DSTVKLWDVELGKLLY--SLNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGK 525 (564)
Q Consensus 471 ---dg~i~iwd~~~~~~~~--~~~~h~~~i~~~~~spdg~~lasgs~d-----g~i~iw~~~~~~ 525 (564)
-..+.+||+.+.+=.. .+.........+.+ +++.++.|+.+ ..+.+||..+.+
T Consensus 171 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 171 KKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp SCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred CCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 2358889988764221 11111111122233 66777777654 357789988764
No 340
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=91.10 E-value=6 Score=36.94 Aligned_cols=210 Identities=10% Similarity=0.087 Sum_probs=97.4
Q ss_pred CcEEEEECCCcceeEEEeecccC-eEEEEcCCCceEEEEeC----C-----CeEEEEEcCCCce--eeEecCCCcceEEE
Q 008467 338 KTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSST----D-----NMIYVCKIGENRP--IKTFAGHQGEVNCV 405 (564)
Q Consensus 338 ~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----d-----~~i~~~~~~~~~~--~~~~~~h~~~i~~v 405 (564)
..+.++|+.+.+|...-...... ...+...++..++.++. + +.+++++..+..- +..+........++
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~ 118 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVG 118 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEE
Confidence 35788888887776532111110 11222234555555554 2 3467777765431 11111111122223
Q ss_pred EECCCCCEEEEEeCC-----CcEEEEeCCCCeeeee--cccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-----Ce
Q 008467 406 KWDPTGSLLASCSDD-----VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----ST 473 (564)
Q Consensus 406 ~~~~~~~~las~s~d-----g~i~iwd~~~~~~~~~--~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-----g~ 473 (564)
.+ ++++++.|+.+ ..+.+||..+...... +.........+.+ + + .+++.|+.+ ..
T Consensus 119 ~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~--------~-~iyv~GG~~~~~~~~~ 185 (308)
T 1zgk_A 119 VI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--N--------R-LLYAVGGFDGTNRLNS 185 (308)
T ss_dssp EE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T--------T-EEEEECCBCSSCBCCC
T ss_pred EE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--C--------C-EEEEEeCCCCCCcCce
Confidence 33 56777777643 3577888876653321 1110000111111 1 1 244445443 45
Q ss_pred EEEEeCCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeEEEEEecCC-C-EEEEEEccC
Q 008467 474 VKLWDVELGKLLY--SLNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGKIVKTYTGNG-G-IFEVCWNKE 544 (564)
Q Consensus 474 i~iwd~~~~~~~~--~~~~h~~~i~~~~~spdg~~lasgs~d-----g~i~iw~~~~~~~~~~~~~~~-~-i~~~~w~~~ 544 (564)
+.+||+.+.+=.. .+.........+.+ ++++++.|+.+ ..+.+||+.+.+-...-.... . -..++. -+
T Consensus 186 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~ 262 (308)
T 1zgk_A 186 AECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQ 262 (308)
T ss_dssp EEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ET
T ss_pred EEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-EC
Confidence 8888887654221 11111111222333 67777777764 468999998765322111111 0 011111 25
Q ss_pred CCEEEEEEcC-----CcEEEEEee
Q 008467 545 GDKIAACFAN-----HTVCVLDFR 563 (564)
Q Consensus 545 g~~la~~~~~-----~~v~v~~~~ 563 (564)
++.++.|..+ ..+.+||..
T Consensus 263 ~~i~v~GG~~~~~~~~~v~~yd~~ 286 (308)
T 1zgk_A 263 GRIYVLGGYDGHTFLDSVECYDPD 286 (308)
T ss_dssp TEEEEECCBCSSCBCCEEEEEETT
T ss_pred CEEEEEcCcCCCcccceEEEEcCC
Confidence 6666776543 346677653
No 341
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=90.84 E-value=0.43 Score=48.25 Aligned_cols=90 Identities=13% Similarity=0.191 Sum_probs=62.3
Q ss_pred eEEEEeCCC----CeE-EEEEeCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCC------CeE-------EEEEecC
Q 008467 473 TVKLWDVEL----GKL-LYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKE------GKI-------VKTYTGN 533 (564)
Q Consensus 473 ~i~iwd~~~----~~~-~~~~~~h~~~i~~~~~spdg~~lasgs-~dg~i~iw~~~~------~~~-------~~~~~~~ 533 (564)
.|.+.|.+. +.. ++.+. -......+..+|||++++.++ .+.+|.++++.+ +++ +......
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP-~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G 377 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVP-VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG 377 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEE-ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC
T ss_pred CeeEEccccccccCCceEEEEe-CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC
Confidence 467777765 322 22222 223346788999999987665 578999999874 222 3333334
Q ss_pred CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467 534 GGIFEVCWNKEGDKIAACFANHTVCVLDFR 563 (564)
Q Consensus 534 ~~i~~~~w~~~g~~la~~~~~~~v~v~~~~ 563 (564)
-+....+|+++|+...+.+.|..|+-||+.
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~ 407 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNME 407 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred CcccEEEECCCCceEeeeeecceEEEEecc
Confidence 467899999999777777899999999874
No 342
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=89.91 E-value=14 Score=35.28 Aligned_cols=225 Identities=16% Similarity=0.156 Sum_probs=113.3
Q ss_pred CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEe------ecccCeEEEEcCC-----CceEEEE--eCCCeEEE
Q 008467 317 GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE------FHSGPTLDVDWRN-----NVSFATS--STDNMIYV 383 (564)
Q Consensus 317 ~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~--~~d~~i~~ 383 (564)
...++|+|.|+|..+++--..|.|++++..++....... ......+.+.+.+ ...+++- ..++.|..
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 345789999999877666558999999876554322111 1123456777754 2344432 24556766
Q ss_pred EEcCCC----------cee-eEec-CCCcceEEEEECCCCCEEEEEeCC-------------CcEEEEeCCCC-------
Q 008467 384 CKIGEN----------RPI-KTFA-GHQGEVNCVKWDPTGSLLASCSDD-------------VTAKIWNMKQD------- 431 (564)
Q Consensus 384 ~~~~~~----------~~~-~~~~-~h~~~i~~v~~~~~~~~las~s~d-------------g~i~iwd~~~~------- 431 (564)
+..... +.+ ..+. +.......|.|.|||.+.++.++. |.|.-.+....
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf 191 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPF 191 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSS
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCC
Confidence 766541 111 1121 112234579999999988886542 33322233211
Q ss_pred --eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe------------------EEEEEeCC
Q 008467 432 --KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK------------------LLYSLNGH 491 (564)
Q Consensus 432 --~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~------------------~~~~~~~h 491 (564)
..+.. .+|. ....++|.|++. ++.+--+.|+--.|--+..|. .+..+..+
T Consensus 192 ~~~~i~a-~G~R-Np~Gla~dp~G~--------L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~ 261 (347)
T 3das_A 192 PGSPVYS-YGHR-NVQGLAWDDKQR--------LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD 261 (347)
T ss_dssp TTCCEEE-BCCS-BCCEEEECTTCC--------EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT
T ss_pred CCCeEEe-eCCC-CcceEEECCCCC--------EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC
Confidence 00100 1221 234567776543 122111222211111111111 12223222
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE---EEE-ec-CCCEEEEEEccCCCEEEEEE
Q 008467 492 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV---KTY-TG-NGGIFEVCWNKEGDKIAACF 552 (564)
Q Consensus 492 ~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~---~~~-~~-~~~i~~~~w~~~g~~la~~~ 552 (564)
......++|. +|..++..-..+.|....+..+..+ ..+ .+ .+.+.+|+..|||..+++..
T Consensus 262 ~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 262 EASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 2345667776 4555555555566666666544321 122 22 35689999999998776653
No 343
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=89.64 E-value=0.076 Score=38.80 Aligned_cols=32 Identities=28% Similarity=0.371 Sum_probs=29.2
Q ss_pred cchhhhhHHHHHhcCCceeeeccccccCCccC
Q 008467 7 EELNYLVFRYLQESGLLHSAFVLGYEAGINKC 38 (564)
Q Consensus 7 ~evn~Li~ryl~E~g~~~sa~~~~~E~~~~~~ 38 (564)
+|+|.=|..||+-+||..++-+|..|.+++.+
T Consensus 11 eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~ 42 (88)
T 1uuj_A 11 DELNRAIADYLRSNGYEEAYSVFKKEAELDMN 42 (88)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC
Confidence 79999999999999999999999999877643
No 344
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=89.17 E-value=11 Score=40.14 Aligned_cols=190 Identities=10% Similarity=0.075 Sum_probs=93.9
Q ss_pred CCCEEEEeeCC----CcEEEEECCCcceeEEE-ee-----ccc-CeEEEEcC--CCceEEEEeCC------CeEEEEEcC
Q 008467 327 KGDYLLTGSCD----KTAIVWDVKTEEWKQQF-EF-----HSG-PTLDVDWR--NNVSFATSSTD------NMIYVCKIG 387 (564)
Q Consensus 327 ~~~~l~s~s~D----~~v~iwd~~~~~~~~~~-~~-----~~~-~~~~~~~~--~~~~~~~~~~d------~~i~~~~~~ 387 (564)
++..++.|+.+ ..+.+||+.+++|...- .. ... ....+... ++..++.++.+ +.+++++..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 45556666643 46888999888877644 21 111 11222223 55566666532 246777776
Q ss_pred CCce--eeEecCCCcceEEEEECCCCCEEEEEeCCC--cEEEEeCCCCeeeeecc-----cccccEEEEEEccCCCCCCC
Q 008467 388 ENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDDV--TAKIWNMKQDKYVHDLR-----EHSKEIYTIRWSPTGSGTNN 458 (564)
Q Consensus 388 ~~~~--~~~~~~h~~~i~~v~~~~~~~~las~s~dg--~i~iwd~~~~~~~~~~~-----~~~~~i~~i~~~p~~~~~~~ 458 (564)
+..= +..+......- +++.-.++++++.|+.++ .+.+||..+......-. .......++.+....
T Consensus 477 t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~----- 550 (695)
T 2zwa_A 477 TREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS----- 550 (695)
T ss_dssp TTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT-----
T ss_pred CCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC-----
Confidence 5421 11111111111 222323788888887655 68899988765432110 000001112222210
Q ss_pred CCCcEEEEEEeC--C-----CeEEEEeCCCCe--------EEEEEe-CCCCCEEEEEEcCCCCEEEEEeCC--------C
Q 008467 459 PNQQLILASASF--D-----STVKLWDVELGK--------LLYSLN-GHREPVYSLAFSPTGEYLASGSLD--------K 514 (564)
Q Consensus 459 ~~~~~~l~s~s~--d-----g~i~iwd~~~~~--------~~~~~~-~h~~~i~~~~~spdg~~lasgs~d--------g 514 (564)
+. +++.|+. + +.+.+||+.+.+ .+.... ..+.....+ ...++++++.||.+ .
T Consensus 551 --~~-iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~ 626 (695)
T 2zwa_A 551 --KQ-GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK-YITPRKLLIVGGTSPSGLFDRTN 626 (695)
T ss_dssp --TE-EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE-EEETTEEEEECCBCSSCCCCTTT
T ss_pred --CE-EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE-EeCCCEEEEECCccCCCCCCCCC
Confidence 12 4444544 2 458889988765 111111 111111222 23337777877743 4
Q ss_pred cEEEEeCCCCeE
Q 008467 515 SMHIWSLKEGKI 526 (564)
Q Consensus 515 ~i~iw~~~~~~~ 526 (564)
.|.+||..+.+-
T Consensus 627 ~v~~yd~~t~~W 638 (695)
T 2zwa_A 627 SIISLDPLSETL 638 (695)
T ss_dssp SEEEEETTTTEE
T ss_pred eEEEEECCCCeE
Confidence 699999987754
No 345
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=88.82 E-value=19 Score=35.42 Aligned_cols=233 Identities=12% Similarity=0.151 Sum_probs=129.4
Q ss_pred ECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc-ceeEEEeeccc--
Q 008467 283 WNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSG-- 359 (564)
Q Consensus 283 ~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~-- 359 (564)
.+|..+.+|.-. ..++.|++.+.+.+..-.....+|.--+|-.....-+. .+..|.-|++... ...+.|..|..
T Consensus 73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lV--T~taVyHWsi~~~s~P~kvFdR~~~L~ 149 (494)
T 1bpo_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV--TDNAVYHWSMEGESQPVKMFDRHSSLA 149 (494)
T ss_dssp ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEE--CSSEEEEEESSSSCCCEEEEECCGGGT
T ss_pred eCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEE--cCCeeEEecccCCCCchhheecchhcc
Confidence 456666666655 67999999987655433334457777888765543232 2568999998643 34555655442
Q ss_pred --CeEEEEcCCCc--eEEEE--eC----CCeEEEEEcCCCceeeEecCCCcceEEEEECCC---CCEEEEEeCC---CcE
Q 008467 360 --PTLDVDWRNNV--SFATS--ST----DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT---GSLLASCSDD---VTA 423 (564)
Q Consensus 360 --~~~~~~~~~~~--~~~~~--~~----d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~---~~~las~s~d---g~i 423 (564)
.++......+. ..+++ .. .|.+.+|....+ ..+.+.||.+....+....+ .++++-+... +.+
T Consensus 150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kL 228 (494)
T 1bpo_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 228 (494)
T ss_dssp TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEE
T ss_pred cceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEE
Confidence 23332222222 11211 12 345667776543 34667888776655544322 1244444443 678
Q ss_pred EEEeCCCCe-eeeecccccccEEEEEEccCCCCCC------CCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEE
Q 008467 424 KIWNMKQDK-YVHDLREHSKEIYTIRWSPTGSGTN------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY 496 (564)
Q Consensus 424 ~iwd~~~~~-~~~~~~~~~~~i~~i~~~p~~~~~~------~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~ 496 (564)
+|-++.... -. .........+-|.|+....+ ++.. -++..-..-|.|.++|+.++.+++.-+-...+|.
T Consensus 229 hi~Ei~~~~~~~---~~f~kk~vdv~fppe~~~DFPvamqvs~ky-gviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF 304 (494)
T 1bpo_A 229 HIIEVGTPPTGN---QPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 304 (494)
T ss_dssp EEEECSCCCTTC---CCCCCEEEECCCCTTSTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred EEEEcCCCccCC---CCccceeeeeeCCcccccCceeEEEecccC-CEEEEEecCceEEEEecccceeeeeecccCCceE
Confidence 888874320 00 01112233333434322111 0111 1444556789999999999999988777777777
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 008467 497 SLAFSPTGEYLASGSLDKSMHIWSLKE 523 (564)
Q Consensus 497 ~~~~spdg~~lasgs~dg~i~iw~~~~ 523 (564)
..+.+....-++.....|.|.--.+..
T Consensus 305 ~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 305 VTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp EEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred EecccCCCCcEEEEccCceEEEEEEcc
Confidence 766666555555555666665554443
No 346
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=88.50 E-value=6.9 Score=37.38 Aligned_cols=91 Identities=8% Similarity=0.028 Sum_probs=41.9
Q ss_pred CCEEEEeeC-CCcEEEEECCC--cceeEEEeec-cc-CeEEEEcCCCceEEEEeC-C---------CeEEEEEcCCCce-
Q 008467 328 GDYLLTGSC-DKTAIVWDVKT--EEWKQQFEFH-SG-PTLDVDWRNNVSFATSST-D---------NMIYVCKIGENRP- 391 (564)
Q Consensus 328 ~~~l~s~s~-D~~v~iwd~~~--~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~-d---------~~i~~~~~~~~~~- 391 (564)
+..++.|+. ...+.++|+.+ .+|...-... .. ....+...++..++.++. + +.+++++..+..=
T Consensus 20 ~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~ 99 (357)
T 2uvk_A 20 DTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWV 99 (357)
T ss_dssp TEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEE
T ss_pred CEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEE
Confidence 344444443 34677888763 5555432222 11 111222234555665554 1 3577777765431
Q ss_pred -eeEec-CCCcceEEEEECCCCCEEEEEeCC
Q 008467 392 -IKTFA-GHQGEVNCVKWDPTGSLLASCSDD 420 (564)
Q Consensus 392 -~~~~~-~h~~~i~~v~~~~~~~~las~s~d 420 (564)
+..+. .......++. .++++++.|+.+
T Consensus 100 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 100 KLMSHAPMGMAGHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp ECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred ECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence 11111 1111122222 467888888765
No 347
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=88.08 E-value=16 Score=33.64 Aligned_cols=180 Identities=16% Similarity=0.091 Sum_probs=90.6
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEECC--CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467 277 DVTTLDWNGEGTLLATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 354 (564)
Q Consensus 277 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 354 (564)
.|..++-.....+++ . ||.+..|-.+ +++- ....-...|..++.... +.+.-. ||.|..|-..........
T Consensus 64 ~i~~ia~G~~hs~~l--~-~G~v~~wG~n~~Gqlg-~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~ 136 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL--K-DGEVIAWGGNEDGQTT-VPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVP 136 (282)
T ss_dssp CCCEEEECSSEEEEE--E-TTEEEEEECCTTSTTC-CCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCC
T ss_pred CEEEEEeCCCEEEEE--E-CCEEEEeeCCCCCCCC-CCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCC
Confidence 466666554433333 4 8999999754 2221 11111346777765543 344445 999999975432111111
Q ss_pred eecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee
Q 008467 355 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 434 (564)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~ 434 (564)
......+..+..-....++.. ++.++.|-......+..-..-...|..++......+ +. .||.+..|-......+
T Consensus 137 ~~~~~~i~~i~~G~~~~~~l~--~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~-al--~~G~v~~wG~n~~gql 211 (282)
T 3qhy_B 137 AEAQSGVTALDGGVYTALAVK--NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSL-AL--KDGKVIAWGDNRYKQT 211 (282)
T ss_dssp GGGGSSEEEEEECSSEEEEEE--TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEE-EE--ETTEEEEEECCTTSTT
T ss_pred ccCCCCeEEEEcccCEEEEEE--CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEE-EE--ECCeEEEEECCCCCCC
Confidence 111234555554444444443 789999876543221111111245777776644333 33 5899999976543222
Q ss_pred eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC
Q 008467 435 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 480 (564)
Q Consensus 435 ~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 480 (564)
-.-......|..|+-... ..++.. ||.|..|-..
T Consensus 212 g~p~~~~~~v~~i~~G~~----------h~~al~--~g~v~~wG~n 245 (282)
T 3qhy_B 212 TVPTEALSGVSAIASGEW----------YSLALK--NGKVIAWGSS 245 (282)
T ss_dssp CCCGGGGSSCCEEEECSS----------CEEEEE--TTEEEEESTT
T ss_pred CCCcccCCCceEEEcCCC----------EEEEEE--CCEEEEecCC
Confidence 110111223445543221 123333 8999999654
No 348
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=87.09 E-value=19 Score=33.50 Aligned_cols=139 Identities=9% Similarity=0.031 Sum_probs=80.7
Q ss_pred EECCCCCEEEEEeCC--------------CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEee--CCC--cEEEE
Q 008467 282 DWNGEGTLLATGSYD--------------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS--CDK--TAIVW 343 (564)
Q Consensus 282 ~~s~~g~~l~sg~~d--------------g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--~D~--~v~iw 343 (564)
-++++|.+|.-+... ..|+..+.++.....+.... +..|++++++|+-.. .++ .|..-
T Consensus 59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~ 134 (302)
T 3s25_A 59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRI 134 (302)
T ss_dssp EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEE
T ss_pred eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEE
Confidence 456778877776543 36777777776554443322 235677888887665 334 45555
Q ss_pred ECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCC--
Q 008467 344 DVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV-- 421 (564)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg-- 421 (564)
++.... .+.+..+.. ..++|.....+.+......|++.++........+.+ ... ..++|++..|+-....+
T Consensus 135 ~~dGs~-~~~lt~~~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~ 207 (302)
T 3s25_A 135 RIDGEE-KKKIKNHYL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDN 207 (302)
T ss_dssp ETTSCC-CEEEESSCC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTT
T ss_pred ECCCCC-eEEEeCCCc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCc
Confidence 655433 223322222 345777777666666678899998877655444443 222 23558888887665443
Q ss_pred cEEEEeCCCC
Q 008467 422 TAKIWNMKQD 431 (564)
Q Consensus 422 ~i~iwd~~~~ 431 (564)
.|..-++...
T Consensus 208 ~I~~~~ldG~ 217 (302)
T 3s25_A 208 AIVHVNINNP 217 (302)
T ss_dssp EEEEECSSSC
T ss_pred EEEEEECCCC
Confidence 3444444443
No 349
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=87.02 E-value=20 Score=33.47 Aligned_cols=235 Identities=7% Similarity=0.009 Sum_probs=119.6
Q ss_pred CCCCEEEEEe--CCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCC--------------CcEEEEECCCc
Q 008467 285 GEGTLLATGS--YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD--------------KTAIVWDVKTE 348 (564)
Q Consensus 285 ~~g~~l~sg~--~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D--------------~~v~iwd~~~~ 348 (564)
.+|..+.... .++.|...+.+|.....+... .+--++++|.+|+-+... ..|+..++...
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~ 98 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH 98 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCCEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC
Confidence 3555555553 245666667776554444322 123458889888766542 35677777665
Q ss_pred ceeEEEeecccCeEEEEcCCCceEEEE---eCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CCcEE
Q 008467 349 EWKQQFEFHSGPTLDVDWRNNVSFATS---STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAK 424 (564)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg~i~ 424 (564)
+... +. ..+...+....+..+.+. .....|+..++...... .+..+.. .+++++++.|+-.+. ...|.
T Consensus 99 ~~~~-l~--~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~-~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy 170 (302)
T 3s25_A 99 GSTV-LD--PDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKK-KIKNHYL----FTCNTSDRYFYYNNPKNGQLY 170 (302)
T ss_dssp CCEE-EE--CSCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCE-EEESSCC----CCSEEETTEEEEECTTTCCEE
T ss_pred cceE-ee--cCCccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeE-EEeCCCc----eEeeEECCEEEEEeCCCceEE
Confidence 4322 21 222233444445444444 34556777777654433 3333322 345778888776655 56777
Q ss_pred EEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-CeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCC
Q 008467 425 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVELGKLLYSLNGHREPVYSLAFSPT 503 (564)
Q Consensus 425 iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~h~~~i~~~~~spd 503 (564)
.-++..+.....+. +... ..+.|.+. .+..+-..+ ..|..-++..+. ...+.. ..+ ..|+|+
T Consensus 171 ~~~l~g~~~~~l~~---~~~~-~~~~P~g~--------~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~ 233 (302)
T 3s25_A 171 RYDTASQSEALFYD---CNCY-KPVVLDDT--------NVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVY 233 (302)
T ss_dssp EEETTTTEEEEEEC---SCEE-EEEEEETT--------EEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEE
T ss_pred EEECCCCCEEEEeC---CCcc-ceeeecCC--------EEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEEC
Confidence 77776654332222 2222 23446654 233332222 355555655333 333332 233 347888
Q ss_pred CCEEEEEeC--CCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEE
Q 008467 504 GEYLASGSL--DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACF 552 (564)
Q Consensus 504 g~~lasgs~--dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~ 552 (564)
|.+|.-++. .+.|..-++..........+ .+. ++++.+++|....
T Consensus 234 g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~--~~~--~i~i~~d~Iy~td 280 (302)
T 3s25_A 234 GSLIFYQRGGDNPALCVVKNDGTGFKELAKG--EFC--NINVTSQYVYFTD 280 (302)
T ss_dssp TTEEEEEECSSSCEEEEEETTSCCCEEEEES--CEE--EEEECSSEEEEEE
T ss_pred CCEEEEEECCCCcEEEEEECCCCccEEeeCC--ccc--eEEEeCCEEEEEE
Confidence 988876533 34566656543322222222 222 4455666666554
No 350
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=86.17 E-value=29 Score=34.61 Aligned_cols=104 Identities=12% Similarity=0.081 Sum_probs=58.6
Q ss_pred CEEEEEeCCCCC-EEEEeeCCCcEEEEECCCcc---eeEEEe--e-------cccCeEEEEcCCC-----ceEEEEeC--
Q 008467 318 PIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEE---WKQQFE--F-------HSGPTLDVDWRNN-----VSFATSST-- 377 (564)
Q Consensus 318 ~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~---~~~~~~--~-------~~~~~~~~~~~~~-----~~~~~~~~-- 377 (564)
.-+.|+|.|+|. .|+.+...|.|++++..... .+..+. . .....+.+.+.++ ..+++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 347899999996 56667788999999754321 111111 0 0234567777654 34444321
Q ss_pred C----------CeEEEEEcCCC----------ceeeEec--CCCcceEEEEECCCCCEEEEEeCCC
Q 008467 378 D----------NMIYVCKIGEN----------RPIKTFA--GHQGEVNCVKWDPTGSLLASCSDDV 421 (564)
Q Consensus 378 d----------~~i~~~~~~~~----------~~~~~~~--~h~~~i~~v~~~~~~~~las~s~dg 421 (564)
+ ..|..+.+... +.+..+. ........|+|.|||.+.++.++.+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1 24555665421 1222221 2223467899999999988776644
No 351
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=85.63 E-value=23 Score=37.55 Aligned_cols=148 Identities=12% Similarity=0.124 Sum_probs=77.2
Q ss_pred CCCCEEEEEeCC----CeEEEEECCCceeEeec-C--------CCCCEEEEEeCCCCCEEEEeeCC------CcEEEEEC
Q 008467 285 GEGTLLATGSYD----GQARIWSTNGDLKCTLS-K--------HKGPIFSLKWNKKGDYLLTGSCD------KTAIVWDV 345 (564)
Q Consensus 285 ~~g~~l~sg~~d----g~i~vw~~~~~~~~~~~-~--------h~~~V~~l~~~~~~~~l~s~s~D------~~v~iwd~ 345 (564)
.++.+++.|+.+ ..+.+||.....-..+. . ....-..+.+..++..++.|+.+ ..+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 466777888764 35677776543222222 1 11111222232266667777654 35789999
Q ss_pred CCcceeEEEeecccC--eEEEEcCCCceEEEEeCCC--eEEEEEcCCCceeeE-----ecCCCcceEEEEECCC-CCEEE
Q 008467 346 KTEEWKQQFEFHSGP--TLDVDWRNNVSFATSSTDN--MIYVCKIGENRPIKT-----FAGHQGEVNCVKWDPT-GSLLA 415 (564)
Q Consensus 346 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~--~i~~~~~~~~~~~~~-----~~~h~~~i~~v~~~~~-~~~la 415 (564)
.+.+|...-...... ...+.+.++..++.++.++ .+++|+..+..=... +........++.+..+ +++++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 988876642221111 1122223566666665443 678888766431111 1111111233555544 67777
Q ss_pred EEeC--C-----CcEEEEeCCCCe
Q 008467 416 SCSD--D-----VTAKIWNMKQDK 432 (564)
Q Consensus 416 s~s~--d-----g~i~iwd~~~~~ 432 (564)
.|+. + ..+.+||+.+..
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTC
T ss_pred ECCcCCCCCeeeCcEEEEEccCCc
Confidence 7765 2 357888887765
No 352
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=83.77 E-value=2.7 Score=42.59 Aligned_cols=93 Identities=13% Similarity=0.169 Sum_probs=64.6
Q ss_pred CCCcEEEEEEeCCCeEEEEeCCC------Ce-------EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-
Q 008467 459 PNQQLILASASFDSTVKLWDVEL------GK-------LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG- 524 (564)
Q Consensus 459 ~~~~~~l~s~s~dg~i~iwd~~~------~~-------~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~- 524 (564)
|+.++++++|-.+.+|.++|+++ ++ .+.... -.......+|.++|....|--.|..|.-|++...
T Consensus 332 PDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~ 410 (638)
T 3sbq_A 332 SDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAV 410 (638)
T ss_dssp TTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHH
T ss_pred CCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEEEeccHHH
Confidence 44457888888999999999873 11 122333 2345688999999966667778999999998753
Q ss_pred ---------eEEEEEecCCCEEEEEE------ccCCCEEEEEE
Q 008467 525 ---------KIVKTYTGNGGIFEVCW------NKEGDKIAACF 552 (564)
Q Consensus 525 ---------~~~~~~~~~~~i~~~~w------~~~g~~la~~~ 552 (564)
.++....-+-.+-.+.- .+||++|++..
T Consensus 411 ~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 411 RAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp HHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred HHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 35555555544555543 78899888773
No 353
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=83.57 E-value=31 Score=32.81 Aligned_cols=108 Identities=14% Similarity=0.088 Sum_probs=60.2
Q ss_pred CccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC----CCEE
Q 008467 215 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE----GTLL 290 (564)
Q Consensus 215 h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~----g~~l 290 (564)
.-.....++|.|+|++|++-...|.|++++..++.. ..+................|+++|+ +.+.
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~-----------~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lY 98 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK-----------TELGEVPGVSPSGEGGLLGIALSPDYASDHMVY 98 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-----------EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE-----------eeecccCceeecCCCCceeeEeccccccCCEEE
Confidence 345568999999999888765589998887543321 0111111111122356789999995 4444
Q ss_pred EEEe--CCCeEEEEECCC------c---eeE---ee---cCCCCCEEEEEeCCCCCEEEEee
Q 008467 291 ATGS--YDGQARIWSTNG------D---LKC---TL---SKHKGPIFSLKWNKKGDYLLTGS 335 (564)
Q Consensus 291 ~sg~--~dg~i~vw~~~~------~---~~~---~~---~~h~~~V~~l~~~~~~~~l~s~s 335 (564)
++-+ .++.|.-|...+ . ... .+ ..|.. ..|.|.|+|...++.+
T Consensus 99 v~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g--~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 99 AYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNG--GRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCC--CCEEECTTSCEEEECB
T ss_pred EEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccC--ccccCCCCCCEEEEEC
Confidence 4322 233444444332 1 111 12 12432 4689999998777644
No 354
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=79.19 E-value=69 Score=33.92 Aligned_cols=217 Identities=13% Similarity=0.090 Sum_probs=111.7
Q ss_pred eCCCCCEEEE-eeCC----CcEEEEECCCcceeE-EEeecccC--------eEEEEcCCCceEEEEe-----------CC
Q 008467 324 WNKKGDYLLT-GSCD----KTAIVWDVKTEEWKQ-QFEFHSGP--------TLDVDWRNNVSFATSS-----------TD 378 (564)
Q Consensus 324 ~~~~~~~l~s-~s~D----~~v~iwd~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~-----------~d 378 (564)
++|++++++. -|.. ..++++|+.+++++. .|. .... ...+.|.++..|..+. ..
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSB
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCC
Confidence 7888887553 3332 369999999988764 222 1110 0233777555554432 12
Q ss_pred CeEEEEEcCCCc--eeeEecCCCcce-EEEEECCCCC-----EEEEEeCC---CcEEEEeCCC--CeeeeecccccccEE
Q 008467 379 NMIYVCKIGENR--PIKTFAGHQGEV-NCVKWDPTGS-----LLASCSDD---VTAKIWNMKQ--DKYVHDLREHSKEIY 445 (564)
Q Consensus 379 ~~i~~~~~~~~~--~~~~~~~h~~~i-~~v~~~~~~~-----~las~s~d---g~i~iwd~~~--~~~~~~~~~~~~~i~ 445 (564)
..++.|.+++.. -...|.+....+ ..+..+++++ .+++.+.+ ..+.+.+... +.. ..+......
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~-- 292 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMPSDA-- 292 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSCTTC--
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecCCcc--
Confidence 468889888753 344565544433 3455566766 35554433 2344445432 221 222111111
Q ss_pred EEEEccCCCCCCCCCCcEEEEE---------EeCCCeEEEEeCCCC-------eEEEE-EeC-CCCCEEEEEEcCCCCEE
Q 008467 446 TIRWSPTGSGTNNPNQQLILAS---------ASFDSTVKLWDVELG-------KLLYS-LNG-HREPVYSLAFSPTGEYL 507 (564)
Q Consensus 446 ~i~~~p~~~~~~~~~~~~~l~s---------~s~dg~i~iwd~~~~-------~~~~~-~~~-h~~~i~~~~~spdg~~l 507 (564)
.+.+.+.+ .+++.+ ....+.|...|+.++ ..... +.. ....+..+.|..+ .++
T Consensus 293 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~ 363 (711)
T 4hvt_A 293 TLQGSFKE--------YVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVF 363 (711)
T ss_dssp EEEEEETT--------EEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEE
T ss_pred eEeeeECC--------EEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEE
Confidence 11222222 122222 124567778887653 11122 221 2345778888876 566
Q ss_pred EEEeCCC--cEEEEeCCCCe-EEEE---EecCCCEEEEEEccCCCEEEEEEc
Q 008467 508 ASGSLDK--SMHIWSLKEGK-IVKT---YTGNGGIFEVCWNKEGDKIAACFA 553 (564)
Q Consensus 508 asgs~dg--~i~iw~~~~~~-~~~~---~~~~~~i~~~~w~~~g~~la~~~~ 553 (564)
++...++ .|.++++.+|+ .+.. +...+.+..++.+++++.++....
T Consensus 364 ~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~s 415 (711)
T 4hvt_A 364 LATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIE 415 (711)
T ss_dssp EEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEE
T ss_pred EEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEe
Confidence 7777776 47777776664 1222 233345667777888876655443
No 355
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=63.32 E-value=35 Score=34.89 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=43.1
Q ss_pred CEEEEEEcCCCCEEEEEeC------------CCcEEEEeCCCCeEEEEEecC--CCEEEEEEccCCCEEEEEE
Q 008467 494 PVYSLAFSPTGEYLASGSL------------DKSMHIWSLKEGKIVKTYTGN--GGIFEVCWNKEGDKIAACF 552 (564)
Q Consensus 494 ~i~~~~~spdg~~lasgs~------------dg~i~iw~~~~~~~~~~~~~~--~~i~~~~w~~~g~~la~~~ 552 (564)
....|+|+++|.+.++... ...|..++..+|++...+... ..++.++|+||++.|.++.
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 4688999999987773221 126777787788876655443 4589999999999887764
No 356
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=62.07 E-value=12 Score=41.33 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=34.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q 008467 494 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT 531 (564)
Q Consensus 494 ~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~ 531 (564)
.|.+++..++..++.+-+.|++++||++.+++++.+.+
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46778888899999999999999999999999988864
No 357
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=61.60 E-value=32 Score=35.40 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=41.3
Q ss_pred CEEEEEEcCCCCEEEEEeCC------------CcEEEEeCCCCeEEEEEec--CCCEEEEEEccCCCEEEEE
Q 008467 494 PVYSLAFSPTGEYLASGSLD------------KSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAAC 551 (564)
Q Consensus 494 ~i~~~~~spdg~~lasgs~d------------g~i~iw~~~~~~~~~~~~~--~~~i~~~~w~~~g~~la~~ 551 (564)
..-.|+|+|.|.+++.-..+ ..+.+.+..+|++..-+.+ ...++.++|+||++.|.+.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 35779999999977654322 2466667777877655544 3458999999999988765
No 358
>2l1n_A Uncharacterized protein; DUF1823, hypothetical protein, cyanobacteria, structural GEN PSI-biology, protein structure initiative; NMR {Synechococcus elongatus}
Probab=55.91 E-value=4 Score=31.10 Aligned_cols=19 Identities=32% Similarity=0.548 Sum_probs=15.4
Q ss_pred cCccchhhhhHHHHHhcCCcee
Q 008467 4 ITSEELNYLVFRYLQESGLLHS 25 (564)
Q Consensus 4 i~s~evn~Li~ryl~E~g~~~s 25 (564)
|+-..||-|||.|| ||.--
T Consensus 18 isD~~Vn~LVW~~L---GYr~d 36 (120)
T 2l1n_A 18 LSDAEANALVWQAL---GYVWD 36 (120)
T ss_dssp SCHHHHHHHHHHHH---TCCEE
T ss_pred cCHHHHHHHHHHHh---Ccccc
Confidence 45568999999999 98763
No 359
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=55.52 E-value=3.2 Score=30.79 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=38.6
Q ss_pred CcCccchhhhhHHHHHhcCC-ceeeeccccccCCccCCCCCCCCCchhHHHHHHhhcee
Q 008467 3 SITSEELNYLVFRYLQESGL-LHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60 (564)
Q Consensus 3 ~i~s~evn~Li~ryl~E~g~-~~sa~~~~~E~~~~~~~~~~~~ip~~aLv~~~qkgl~y 60 (564)
.||.+| ++||++|.|+|- .-+.-.+.++.+++...+. ++|-.|.+||+..
T Consensus 17 ~Lt~~q--~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt------~iLk~LE~kglIk 67 (91)
T 2dk5_A 17 GSDNQE--KLVYQIIEDAGNKGIWSRDVRYKSNLPLTEIN------KILKNLESKKLIK 67 (91)
T ss_dssp CSCSSH--HHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHH------HHHHHHHHTTSEE
T ss_pred CCCHHH--HHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHH------HHHHHHHHCCCEE
Confidence 355555 799999999886 5666677888888876653 8899999999765
No 360
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=54.89 E-value=1.7e+02 Score=28.98 Aligned_cols=51 Identities=16% Similarity=0.287 Sum_probs=34.7
Q ss_pred CeEEEEECCCCC-EEEEEeCCCeEEEEECCCce----eEeec---------CCCCCEEEEEeCCC
Q 008467 277 DVTTLDWNGEGT-LLATGSYDGQARIWSTNGDL----KCTLS---------KHKGPIFSLKWNKK 327 (564)
Q Consensus 277 ~V~~l~~s~~g~-~l~sg~~dg~i~vw~~~~~~----~~~~~---------~h~~~V~~l~~~~~ 327 (564)
.-..|+|.|+|. .|+++...|.|++++.++.. ...+. ........|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 357899999996 45556788999999865532 11111 11456889999996
No 361
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=51.96 E-value=18 Score=40.02 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=32.3
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeec
Q 008467 401 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 437 (564)
Q Consensus 401 ~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~ 437 (564)
.+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4677888888899999999999999999999987653
No 362
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=50.83 E-value=26 Score=36.85 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=30.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec
Q 008467 494 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG 532 (564)
Q Consensus 494 ~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~ 532 (564)
.|.++.+ +..+|++-+.|.++|+|++++++++.+..-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555555 478999999999999999999999888754
No 363
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=50.76 E-value=1.7e+02 Score=27.84 Aligned_cols=75 Identities=11% Similarity=0.092 Sum_probs=39.4
Q ss_pred CCeEEEEECC--CCCEEEEEeCCC----eEEEEECCCceeEeec------C--------CCCCEEEEEeCCC--CCEEEE
Q 008467 276 KDVTTLDWNG--EGTLLATGSYDG----QARIWSTNGDLKCTLS------K--------HKGPIFSLKWNKK--GDYLLT 333 (564)
Q Consensus 276 ~~V~~l~~s~--~g~~l~sg~~dg----~i~vw~~~~~~~~~~~------~--------h~~~V~~l~~~~~--~~~l~s 333 (564)
..|.+|++.| .+.+.+. +..| .|...+-.+..-..+. . +...|.++.+.|. ...|+.
T Consensus 55 ~~v~~i~~dp~~~~~l~~g-~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMA-ARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEE-EEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEE-ecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 5699999998 5555554 4444 3443332232211111 1 1124778888873 456666
Q ss_pred eeCCCcEEEEECCCccee
Q 008467 334 GSCDKTAIVWDVKTEEWK 351 (564)
Q Consensus 334 ~s~D~~v~iwd~~~~~~~ 351 (564)
+...+.|...+-....+.
T Consensus 134 g~~~ggl~~S~DgG~tW~ 151 (394)
T 3b7f_A 134 GTSPQGLFRSTDHGASWE 151 (394)
T ss_dssp EEETTEEEEESSTTSBCE
T ss_pred EecCCcEEEEcCCCCCeE
Confidence 666666665543333443
No 364
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=49.95 E-value=12 Score=42.33 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=32.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q 008467 494 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT 531 (564)
Q Consensus 494 ~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~ 531 (564)
.+.+++..++..++++-+.|++++||++.+++++.+.+
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34556677888999999999999999999999998864
No 365
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=47.92 E-value=1.9e+02 Score=27.52 Aligned_cols=51 Identities=10% Similarity=-0.030 Sum_probs=25.2
Q ss_pred CEEEEEeCCCeEEEEECC-CceeEee--cCCCCCEEEEEeCC-CCCEEEEeeCCC
Q 008467 288 TLLATGSYDGQARIWSTN-GDLKCTL--SKHKGPIFSLKWNK-KGDYLLTGSCDK 338 (564)
Q Consensus 288 ~~l~sg~~dg~i~vw~~~-~~~~~~~--~~h~~~V~~l~~~~-~~~~l~s~s~D~ 338 (564)
..|..|+..|.+++-+.. +..-... ......|.+|.+.| +...|..+...+
T Consensus 23 g~l~vgt~~Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g 77 (394)
T 3b7f_A 23 VMLLVATIKGAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTG 77 (394)
T ss_dssp CEEEEEETTEEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC-
T ss_pred CEEEEEecCceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCC
Confidence 356667777743333322 2221111 12235699999998 233444454444
No 366
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=44.73 E-value=4.9 Score=28.95 Aligned_cols=29 Identities=24% Similarity=0.143 Sum_probs=26.5
Q ss_pred hhhhhHHHHHhcCCceeeeccccccCCcc
Q 008467 9 LNYLVFRYLQESGLLHSAFVLGYEAGINK 37 (564)
Q Consensus 9 vn~Li~ryl~E~g~~~sa~~~~~E~~~~~ 37 (564)
||=||==||+=.||.+|+-+|+-|++...
T Consensus 21 i~~LVrEyLef~~l~~TlsVf~pEs~l~~ 49 (82)
T 2d68_A 21 VASLVAEFLQFFNLDFTLAVFQPETSTLQ 49 (82)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHcCCcchHHhhhhccCCCC
Confidence 67899999999999999999999999974
No 367
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=40.22 E-value=39 Score=35.51 Aligned_cols=35 Identities=17% Similarity=0.450 Sum_probs=28.6
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeec
Q 008467 401 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 437 (564)
Q Consensus 401 ~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~ 437 (564)
.|.++.+ +..++++-+.|.++|+|++++++++.+.
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 4666655 3689999999999999999999887654
No 368
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=39.38 E-value=20 Score=40.55 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=30.8
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeec
Q 008467 401 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 437 (564)
Q Consensus 401 ~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~ 437 (564)
.+.+++..++.+++++-+.|+++|||++.++.++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 3455666778899999999999999999999887653
No 369
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=37.66 E-value=4.9 Score=26.69 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=22.1
Q ss_pred HHHHHhcC--CceeeeccccccCCccCCCCCCCCCchhHHH
Q 008467 14 FRYLQESG--LLHSAFVLGYEAGINKCNIDGNLVPPRALIT 52 (564)
Q Consensus 14 ~ryl~E~g--~~~sa~~~~~E~~~~~~~~~~~~ip~~aLv~ 52 (564)
..+|.++| |+.+..+|+. + ...|||.|++.
T Consensus 25 ~~cL~~n~Wd~~~A~~~F~~---~------~~~IP~eAF~~ 56 (57)
T 2jp7_A 25 FMLAEQSNWNYEVAIKGFQS---S------MNGIPREAFVQ 56 (57)
T ss_dssp HHHHHHTTTCSHHHHHHHHH---S------TTTSCHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHH---H------HcCCCHHHhcc
Confidence 35788888 7788888875 1 23699999874
No 370
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=32.11 E-value=4.2e+02 Score=26.93 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=29.8
Q ss_pred CCCCEEEEEeCCCCC-EEEEeeCCCc----------------------------EEEEECCCcceeEEEee
Q 008467 315 HKGPIFSLKWNKKGD-YLLTGSCDKT----------------------------AIVWDVKTEEWKQQFEF 356 (564)
Q Consensus 315 h~~~V~~l~~~~~~~-~l~s~s~D~~----------------------------v~iwd~~~~~~~~~~~~ 356 (564)
|-.++....|.-+|+ -++....+++ +.++|-.+++.+..+..
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~ 247 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANF 247 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEEC
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccC
Confidence 455677777777775 3666666665 78999888888776654
No 371
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=30.99 E-value=19 Score=34.29 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=40.4
Q ss_pred hhhHHHHHhcCCceeeeccccccCCccCCCCCCCCCchhHHHHHHhhceeEe
Q 008467 11 YLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62 (564)
Q Consensus 11 ~Li~ryl~E~g~~~sa~~~~~E~~~~~~~~~~~~ip~~aLv~~~qkgl~y~~ 62 (564)
--+|++|.+.| ..||..+.+++++++..++ .+|-+|.+||+....
T Consensus 21 a~vY~~Ll~~g-~~t~~eia~~~gv~~~~Vy------~~L~~L~~~GlV~~~ 65 (342)
T 3qph_A 21 ILTYWTLLVYG-PSTAKEISTKSGIPYNRVY------DTISSLKLRGFVTEI 65 (342)
T ss_dssp TSCSHHHHHHH-HHHHSCCSSSTTSSSCSCC------HHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHCcCHHHHH------HHHHHHHHCCCEEEE
Confidence 35899999988 8899999999999999986 899999999998765
No 372
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=30.30 E-value=3.4e+02 Score=25.26 Aligned_cols=102 Identities=13% Similarity=0.087 Sum_probs=0.0
Q ss_pred CCcEEEEEEeCCCeEEEEeCCC-------CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC----------
Q 008467 460 NQQLILASASFDSTVKLWDVEL-------GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK---------- 522 (564)
Q Consensus 460 ~~~~~l~s~s~dg~i~iwd~~~-------~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~---------- 522 (564)
....+++..+.+|.|+-..+.. |.....+.. .+.+..+........|+..+..|.+..+.+.
T Consensus 107 ~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~ 185 (327)
T 3uc1_A 107 TDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRA 185 (327)
T ss_dssp TSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTT
T ss_pred CCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcC
Q ss_pred -CCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467 523 -EGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDF 562 (564)
Q Consensus 523 -~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~ 562 (564)
.|...-.+.....|.++..-+++..|+..+.+|.+....+
T Consensus 186 a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l 226 (327)
T 3uc1_A 186 TSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAI 226 (327)
T ss_dssp SBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEG
T ss_pred CCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEH
No 373
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=26.75 E-value=2.4e+02 Score=28.82 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=27.2
Q ss_pred eEEEEeCCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEEE
Q 008467 473 TVKLWDVELGKLLYSLNGH-REPVYSLAFSPTGEYLASG 510 (564)
Q Consensus 473 ~i~iwd~~~~~~~~~~~~h-~~~i~~~~~spdg~~lasg 510 (564)
.|..++..+++....+.+. ...++.++||||++.|.++
T Consensus 510 ~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 510 QMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred eEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 5666777777765555432 3468999999999988654
No 374
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=24.70 E-value=3e+02 Score=28.26 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=26.6
Q ss_pred eEEEEeCCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEEE
Q 008467 473 TVKLWDVELGKLLYSLNGH-REPVYSLAFSPTGEYLASG 510 (564)
Q Consensus 473 ~i~iwd~~~~~~~~~~~~h-~~~i~~~~~spdg~~lasg 510 (564)
.+.+.+..+++...-+.+. ...++.++|+||++.|...
T Consensus 510 ~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 510 QMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred eEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 3555566677765555544 3569999999999887654
No 375
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=23.63 E-value=27 Score=23.93 Aligned_cols=43 Identities=21% Similarity=0.483 Sum_probs=28.2
Q ss_pred hhhhHHHHHhcCCceeeeccccccCCccCC-CCCCCCCchhHHHHHHhhce
Q 008467 10 NYLVFRYLQESGLLHSAFVLGYEAGINKCN-IDGNLVPPRALITFVQKGLQ 59 (564)
Q Consensus 10 n~Li~ryl~E~g~~~sa~~~~~E~~~~~~~-~~~~~ip~~aLv~~~qkgl~ 59 (564)
--.|||||.++| .+.|....++=+..... ++ -.|-++=.||++
T Consensus 12 ee~I~~fL~~~G-p~~AL~IAK~LGlktAK~VN------p~LY~m~~~~lL 55 (72)
T 3eyi_A 12 EEDIYRFLKDNG-PQRALVIAQALGMRTAKDVN------RDLYRMKSRHLL 55 (72)
T ss_dssp HHHHHHHHHHHC-SEEHHHHHHHTTCCSGGGTH------HHHHHHHHTTSE
T ss_pred HHHHHHHHHHcC-CchHHHHHHHhCcchhhhcC------HHHHHHHHccCc
Confidence 567999999999 56777777666665432 32 345556556654
No 376
>1xkm_A Distinctin chain A; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=21.03 E-value=65 Score=16.43 Aligned_cols=15 Identities=47% Similarity=0.620 Sum_probs=10.5
Q ss_pred CCCCch--hHHHHHHhh
Q 008467 43 NLVPPR--ALITFVQKG 57 (564)
Q Consensus 43 ~~ip~~--aLv~~~qkg 57 (564)
..|||| |||.-+.|-
T Consensus 3 revppgftaliktlrkc 19 (26)
T 1xkm_A 3 REVPPGFTALIKTLRKC 19 (26)
T ss_dssp TCSCHHHHHHHHHHHHH
T ss_pred CcCCCcHHHHHHHHHhc
Confidence 468887 677777663
No 377
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=20.39 E-value=19 Score=25.94 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=40.0
Q ss_pred CccchhhhhHHHHHhcCCceeeeccccccCCccCCCCCCCCCchhHHHHHHhhceeEe
Q 008467 5 TSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62 (564)
Q Consensus 5 ~s~evn~Li~ryl~E~g~~~sa~~~~~E~~~~~~~~~~~~ip~~aLv~~~qkgl~y~~ 62 (564)
+..++-.=|..||++.| -||..+.++=+|+...++ ..|-.|.+.|++..+
T Consensus 14 ~~~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~aVr------~~L~~Le~eG~I~~~ 63 (82)
T 1oyi_A 14 SNAEIVCEAIKTIGIEG--ATAAQLTRQLNMEKREVN------KALYDLQRSAMVYSS 63 (82)
T ss_dssp CSHHHHHHHHHHHSSST--EEHHHHHHHSSSCHHHHH------HHHHHHHHHTSSEEC
T ss_pred chHHHHHHHHHHHHHcC--CCHHHHHHHHCcCHHHHH------HHHHHHHHCCCEEeC
Confidence 44566677889999999 999999999999887664 678888899986553
Done!