BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008468
(564 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225459366|ref|XP_002285809.1| PREDICTED: tRNA modification GTPase MnmE [Vitis vinifera]
gi|302141924|emb|CBI19127.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 845 bits (2182), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/581 (75%), Positives = 489/581 (84%), Gaps = 27/581 (4%)
Query: 1 MALLPSLRSVITHQLHHRP----------PPPPPLLSIASFL----FHKPKLRRTTCKNL 46
M LP++R +I+H LH P PL SI +F F P L+
Sbjct: 1 MGHLPAIRHLISH-LHMSPRLSSSSPTTRSSLQPLFSIPTFQKLYSFFPPSLK------- 52
Query: 47 SFSFSSSSKPITLNPLATPKDNTLVFKKDERLVADNGESEEKAGT-FSTIAAIVTSIGGP 105
+ + SK + + TP D TLV KKDERL + + E GT +TIAAIVTS+GGP
Sbjct: 53 --PYHTHSKTLVPHLHLTPNDTTLVLKKDERLGSRSVNQEHIEGTSTTTIAAIVTSLGGP 110
Query: 106 PGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKS--SGSGSWRPTSHVVEYGVVLDRHGNVV 163
P AVGIVRLSGP AV IV RVF+P ++ K K+ SGSGSWRPTSHVVEYGVVLD HGNVV
Sbjct: 111 PSAVGIVRLSGPEAVAIVARVFRPARRNKGKTLGSGSGSWRPTSHVVEYGVVLDHHGNVV 170
Query: 164 DEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGR 223
DEVLA+PMLAPRSYTREDVVELQCHGSEVCLRRVLRACLE+GA LA+PGEFTLRAFLNGR
Sbjct: 171 DEVLAIPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLESGARLAEPGEFTLRAFLNGR 230
Query: 224 LDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEM 283
LDLSQAENV KLISAKS+AAADAALAGIQGGFSSLV S+R +CIELLTEIEARLDFDDEM
Sbjct: 231 LDLSQAENVGKLISAKSIAAADAALAGIQGGFSSLVRSLRIQCIELLTEIEARLDFDDEM 290
Query: 284 PPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSER 343
PPL+LNL+MDKIH+MSQDVENALETANYD+LLQSGLQIAI+GRPNVGKSSLLNAWSKSER
Sbjct: 291 PPLDLNLIMDKIHSMSQDVENALETANYDQLLQSGLQIAIIGRPNVGKSSLLNAWSKSER 350
Query: 344 AIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIM 403
AIVTEIAGTTRDV+EASV++ G+PVTLLDTAGIRETDDIVEKIGVERSEAVA+ ADVIIM
Sbjct: 351 AIVTEIAGTTRDVVEASVSIHGIPVTLLDTAGIRETDDIVEKIGVERSEAVAISADVIIM 410
Query: 404 TVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHV 463
T+SA+DGWTS+D++L NRI SNKK ESSTP+ILV+NKIDCAPSA E GNSF+ H+
Sbjct: 411 TISALDGWTSQDTKLFNRIISNKKFVESSTPVILVVNKIDCAPSACTELFMEGNSFSKHI 470
Query: 464 FTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEE 523
FTCAVTGQGI DLE+AI++IVGL++IPAGGRRW VNQRQCEQL+RTKEAL RL SSIEEE
Sbjct: 471 FTCAVTGQGISDLESAIIEIVGLNKIPAGGRRWTVNQRQCEQLVRTKEALARLISSIEEE 530
Query: 524 LPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+PLDFWTIDLR+AALALGQISGEDISEEVL+NIFGKFCIGK
Sbjct: 531 MPLDFWTIDLREAALALGQISGEDISEEVLTNIFGKFCIGK 571
>gi|255545636|ref|XP_002513878.1| gtpase mss1/trme, putative [Ricinus communis]
gi|223546964|gb|EEF48461.1| gtpase mss1/trme, putative [Ricinus communis]
Length = 557
Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/568 (73%), Positives = 472/568 (83%), Gaps = 21/568 (3%)
Query: 3 LLPSLRSVITHQLHHRPPPPPPLLSIASFLFHKPKLRRTTCKNLSF-SFSSSSKP---IT 58
L+P++R +ITH + P LS + T KNL F S + +P T
Sbjct: 5 LVPAIRIMITHFFTQKTLQLAPKLSTSI---------TTANKNLPFLSPLKTHRPKSHST 55
Query: 59 LNPLATPKDNTLVFKKDERLVADNGESE-EKAGTFSTIAAIVTSIGGPPGAVGIVRLSGP 117
LNP PK + KD+R + NG S+ + +GT TIAAIVTS+GGPP AVGIVRLSGP
Sbjct: 56 LNPNPNPKPTLFLNNKDQRFLGSNGSSDNDNSGT--TIAAIVTSVGGPPAAVGIVRLSGP 113
Query: 118 MAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAVPMLAPRSY 177
AVD+ RVFKP+ KKKKK W+PTSHVV+YGV LD GNV+DEVLA+PML+PRSY
Sbjct: 114 SAVDVAARVFKPMSKKKKKKI----WQPTSHVVDYGVALDNEGNVIDEVLALPMLSPRSY 169
Query: 178 TREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLIS 237
T EDVVELQCHGSEVCL RVLRACL+AGA LA+PGEFTLRAFLNGR+DLSQAENV KLIS
Sbjct: 170 TCEDVVELQCHGSEVCLTRVLRACLQAGARLAEPGEFTLRAFLNGRVDLSQAENVGKLIS 229
Query: 238 AKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHA 297
A SV AADAALAG+QGGF+SL+ S+RA+CIELLTEIEARLDFDDEMPPL+LNL++D+IH
Sbjct: 230 ANSVTAADAALAGLQGGFASLIKSLRAQCIELLTEIEARLDFDDEMPPLDLNLIVDRIHV 289
Query: 298 MSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVI 357
MSQD+E ALETANYDKLLQSGLQIA+VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDV+
Sbjct: 290 MSQDIEIALETANYDKLLQSGLQIALVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVV 349
Query: 358 EASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSE 417
EA VTV G+PVTLLDTAGIRETDDIVEKIGVERSEAVA+GADVII+T+SA DGWTSEDSE
Sbjct: 350 EAGVTVGGIPVTLLDTAGIRETDDIVEKIGVERSEAVAMGADVIILTISAFDGWTSEDSE 409
Query: 418 LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGNSFNDHVFTCAVTGQGIQDL 476
LL+RI+SNKKS SSTP++L INKID APS S EW + +F+ HVFTCAVTGQGI++L
Sbjct: 410 LLSRIESNKKSVGSSTPVVLAINKIDTAPSLSMEWIGRYSKAFSKHVFTCAVTGQGIKEL 469
Query: 477 ETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDA 536
E AI +IVGL++IP GGR+W VNQRQCEQLMRTKEAL RLKSSI++E+PLDFWTIDLRDA
Sbjct: 470 EMAISEIVGLNRIPTGGRKWTVNQRQCEQLMRTKEALARLKSSIKDEMPLDFWTIDLRDA 529
Query: 537 ALALGQISGEDISEEVLSNIFGKFCIGK 564
ALALGQISGE ISEEVLSNIFGKFCIGK
Sbjct: 530 ALALGQISGEGISEEVLSNIFGKFCIGK 557
>gi|356508128|ref|XP_003522812.1| PREDICTED: tRNA modification GTPase MnmE-like [Glycine max]
Length = 520
Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/499 (81%), Positives = 447/499 (89%), Gaps = 13/499 (2%)
Query: 68 NTLVFKKDERLVADNGESEEKAGTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVF 127
N LV KKDERL A GE + G+ +TIAAIVTS+GGPP AVGIVRLSGP AV I GRVF
Sbjct: 33 NNLVLKKDERLGA--GECVGEVGSGTTIAAIVTSVGGPPAAVGIVRLSGPGAVSIAGRVF 90
Query: 128 KPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQC 187
+P +K +WRPTSHVVEYGVVLD GNV+DEVLAVPMLAPRSYTREDVVELQC
Sbjct: 91 RPARK---------TWRPTSHVVEYGVVLDSDGNVIDEVLAVPMLAPRSYTREDVVELQC 141
Query: 188 HGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAA 247
HGSEVCLRRVLR CLEAGATLAQPGEFTLRAFLNGRLDLSQAENV +LI+AKSVAAADAA
Sbjct: 142 HGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVARLIAAKSVAAADAA 201
Query: 248 LAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALE 307
L GIQGGFSSLV S+R++CIELLTEIEARLDFDDEMPPL+LNL+MDKIH MS++VENALE
Sbjct: 202 LEGIQGGFSSLVRSLRSQCIELLTEIEARLDFDDEMPPLDLNLIMDKIHNMSREVENALE 261
Query: 308 TANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVP 367
TANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEAS++V G+P
Sbjct: 262 TANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASISVSGIP 321
Query: 368 VTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKK 427
+TLLDTAGIR+TDDIVEKIGVERSEAVA GAD+IIMT+SAV+GWTSED++LL RIQS K
Sbjct: 322 ITLLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTMSAVEGWTSEDTKLLERIQSTKG 381
Query: 428 STESSTPMILVINKIDCAPSASNEWNK--VGNSFNDHVFTCAVTGQGIQDLETAIMKIVG 485
ST SSTP+ILV+NKIDC P A EW+K + F+ HVFTCAVTGQG+ DLE A+++IVG
Sbjct: 382 STGSSTPVILVVNKIDCKPCAETEWDKGCQNHIFSKHVFTCAVTGQGLHDLEGAVLQIVG 441
Query: 486 LHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISG 545
L IPAGGRRW VNQRQCEQL+RTKEALVRL+SSI++ELPLDFWTIDLRDAAL+LGQISG
Sbjct: 442 LEGIPAGGRRWTVNQRQCEQLVRTKEALVRLQSSIKDELPLDFWTIDLRDAALSLGQISG 501
Query: 546 EDISEEVLSNIFGKFCIGK 564
EDISEEVLSNIFGKFCIGK
Sbjct: 502 EDISEEVLSNIFGKFCIGK 520
>gi|356518497|ref|XP_003527915.1| PREDICTED: tRNA modification GTPase MnmE-like [Glycine max]
Length = 548
Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/570 (73%), Positives = 466/570 (81%), Gaps = 31/570 (5%)
Query: 4 LPSLRSVITHQLHH-------RPPPPPPLLSIASFLFHKPKLRRTTCKNLSFSFSSSSKP 56
+ S R+V+ H + PPP P ++A FL H S
Sbjct: 1 MASFRAVLRHTHIYISTFSCFTPPPRTP--TMALFLSHGAT---------RHCLIPSKPS 49
Query: 57 ITLNPLATPKDNTLVFKKDERLVADNGESEEKAGTFSTIAAIVTSIGGPPGAVGIVRLSG 116
T+ A+ + LV KKDERL GE ++ + +TIAAIVTS+GGPP AVGIVRLSG
Sbjct: 50 RTVKSRASSDNYNLVLKKDERL--GTGECVDEVASGTTIAAIVTSVGGPPAAVGIVRLSG 107
Query: 117 PMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAVPMLAPRS 176
P AV IVGR+F+P +K +WRP SHVVEYGVVLD GNV+DEVLAVPMLAPRS
Sbjct: 108 PGAVSIVGRLFRPARK---------TWRPASHVVEYGVVLDSDGNVIDEVLAVPMLAPRS 158
Query: 177 YTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLI 236
YTREDVVELQCHGSEVCLRRVLR CLEAGATLAQPGEFTLRAFLNGRLDLSQAENV +LI
Sbjct: 159 YTREDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVARLI 218
Query: 237 SAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIH 296
+AKSVAAADAAL GIQGGFSSLV S+R++CIELLTEIEARLDFDDEMPPL+LNL MDKIH
Sbjct: 219 AAKSVAAADAALEGIQGGFSSLVRSLRSQCIELLTEIEARLDFDDEMPPLDLNLTMDKIH 278
Query: 297 AMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDV 356
MS++VENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDV
Sbjct: 279 NMSREVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDV 338
Query: 357 IEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDS 416
IEAS++V G+P+TLLDTAGIR+TDDIVEKIGVERSEAVA GAD+IIMTVSAV+GWTSED+
Sbjct: 339 IEASISVSGIPITLLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWTSEDT 398
Query: 417 ELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNS--FNDHVFTCAVTGQGIQ 474
+LL RIQS K ST SSTP+ILV+NKIDC P A +W+K S F+ VFTCAVTGQG+
Sbjct: 399 KLLERIQSTKGSTGSSTPVILVVNKIDCKPCAETKWDKGCQSHIFSKRVFTCAVTGQGLH 458
Query: 475 DLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLR 534
DLE A+++IVGL IPAGGRRW VNQRQCEQL+RTKEAL RL+SSI+EELPLDFWTIDLR
Sbjct: 459 DLERAVLQIVGLEGIPAGGRRWTVNQRQCEQLVRTKEALARLQSSIKEELPLDFWTIDLR 518
Query: 535 DAALALGQISGEDISEEVLSNIFGKFCIGK 564
DAAL+LGQISGEDISEEVLSNIFGKFCIGK
Sbjct: 519 DAALSLGQISGEDISEEVLSNIFGKFCIGK 548
>gi|449445112|ref|XP_004140317.1| PREDICTED: tRNA modification GTPase MnmE-like [Cucumis sativus]
gi|449526047|ref|XP_004170026.1| PREDICTED: tRNA modification GTPase MnmE-like [Cucumis sativus]
Length = 561
Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/566 (72%), Positives = 462/566 (81%), Gaps = 7/566 (1%)
Query: 1 MALLPSLRSVITHQLHHRPPPPPPLLSIASFLFHKPKLRRTTCKNLSFSFSSSSKPITLN 60
MALLP R I H +R PP L F P R ++ ++S + + +
Sbjct: 1 MALLPGFRHFIAH--FYRTTPPMAFLFTH---FSTPISRPSSIYSISKTSNHVLSKSLIK 55
Query: 61 PLATPKDNTLVFKKDERLVADN-GESEEKAGTFSTIAAIVTSIGGPPGAVGIVRLSGPMA 119
+T K+NT V DERL + G E+ STIAAIVTSIGGPP AVGIVRLSGP A
Sbjct: 56 SHSTGKENTFVLAPDERLGDSHAGTEREQIDNSSTIAAIVTSIGGPPAAVGIVRLSGPRA 115
Query: 120 VDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAVPMLAPRSYTR 179
V+IVG +F P KKK K+ WRPTSHVVEYGVVLD+ G+V+DEVL VPMLAPRSYTR
Sbjct: 116 VNIVGTLFFPAAKKKGKNLSLHPWRPTSHVVEYGVVLDQQGDVIDEVLTVPMLAPRSYTR 175
Query: 180 EDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAK 239
EDV+ELQCHGSEVCLRRVL+ACLEAGA LA+PGEFTLRAFLNGRLDLSQAENV KLISAK
Sbjct: 176 EDVIELQCHGSEVCLRRVLKACLEAGARLAEPGEFTLRAFLNGRLDLSQAENVGKLISAK 235
Query: 240 SVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMS 299
S AAADAALAGIQGGFSSLV S+R +CIELLTEIEARLDFDDEMPPL+LN+VM+K+HAMS
Sbjct: 236 STAAADAALAGIQGGFSSLVKSLRTQCIELLTEIEARLDFDDEMPPLDLNIVMEKVHAMS 295
Query: 300 QDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEA 359
Q+VE ALETANYDKLLQSG+QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEA
Sbjct: 296 QEVETALETANYDKLLQSGIQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEA 355
Query: 360 SVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELL 419
+VTV G+PVTLLDTAGIRETDDIVEKIGVERSEA ALGADVIIM +SA+DGWT+ED+ LL
Sbjct: 356 NVTVSGIPVTLLDTAGIRETDDIVEKIGVERSEAAALGADVIIMAISALDGWTAEDTILL 415
Query: 420 NRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVG-NSFNDHVFTCAVTGQGIQDLET 478
NRI S KKS ES TP++LVINKIDCAPS + + +SF+ VFTCAVTGQGIQ+LE
Sbjct: 416 NRILSKKKSDESCTPILLVINKIDCAPSPKMDAMSINRDSFSKQVFTCAVTGQGIQNLEM 475
Query: 479 AIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAAL 538
AI ++VGL++ A GRRW VNQRQC QL+RTKEA RLKSSIE+ELP DFWT+DLRDA L
Sbjct: 476 AISELVGLNKTLASGRRWTVNQRQCVQLLRTKEAFTRLKSSIEDELPPDFWTVDLRDAVL 535
Query: 539 ALGQISGEDISEEVLSNIFGKFCIGK 564
ALG+I GEDISEE+LSNIFGKFCIGK
Sbjct: 536 ALGEICGEDISEEILSNIFGKFCIGK 561
>gi|224063199|ref|XP_002301037.1| predicted protein [Populus trichocarpa]
gi|222842763|gb|EEE80310.1| predicted protein [Populus trichocarpa]
Length = 483
Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/484 (81%), Positives = 439/484 (90%), Gaps = 5/484 (1%)
Query: 82 NGESEEKAGTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSG 141
NG ++ T TIAAIVTS+GGPP +VGIVRLSGP AV+I RVFKP++KKK G
Sbjct: 4 NGTDDKSIST--TIAAIVTSVGGPPASVGIVRLSGPSAVEIAARVFKPMRKKK--KKGFC 59
Query: 142 SWRPTSHVVEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRAC 201
W+PTSHVV+YGVVLD GNVVDEVLAVPMLAPRSYTREDVVELQCHG+EVCLRRVLRAC
Sbjct: 60 VWKPTSHVVDYGVVLDHQGNVVDEVLAVPMLAPRSYTREDVVELQCHGTEVCLRRVLRAC 119
Query: 202 LEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTS 261
+EAGA LA+PGEFTLRAFLNGRLDLSQAENV KLIS+KSVAAADAALAGIQGGF+SLV S
Sbjct: 120 IEAGARLAEPGEFTLRAFLNGRLDLSQAENVGKLISSKSVAAADAALAGIQGGFASLVKS 179
Query: 262 VRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQI 321
+R +CIELLTEIEARLDFDDEMPPL+LNL+MDKIH+MS++VENAL+TANYDKLLQSGLQI
Sbjct: 180 LRTQCIELLTEIEARLDFDDEMPPLDLNLIMDKIHSMSENVENALKTANYDKLLQSGLQI 239
Query: 322 AIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDD 381
AIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRD++EAS+TV G+PV LLDTAGIR TDD
Sbjct: 240 AIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDIVEASITVGGIPVILLDTAGIRVTDD 299
Query: 382 IVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINK 441
+VEKIGVERSEAVALGADVI+MTVSA+DGWT ED+ELLNRI S KKS S TPMILV+NK
Sbjct: 300 VVEKIGVERSEAVALGADVIVMTVSALDGWTPEDTELLNRIVSKKKSVGSFTPMILVVNK 359
Query: 442 IDCAPSASNEW-NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQ 500
IDC+PS +EW ++ G SF+ HVFTCA+TGQGIQDLE AI +IVGL++IPAGG +W VN
Sbjct: 360 IDCSPSLCSEWVDRGGGSFSKHVFTCAITGQGIQDLEMAISEIVGLNKIPAGGLKWTVNH 419
Query: 501 RQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKF 560
RQCEQL+R KEALVRLKSSIEEE+PLDFWTIDLRDAALALGQISGE+ISEE+LSNIFGKF
Sbjct: 420 RQCEQLVRMKEALVRLKSSIEEEMPLDFWTIDLRDAALALGQISGENISEEILSNIFGKF 479
Query: 561 CIGK 564
CIGK
Sbjct: 480 CIGK 483
>gi|358349532|ref|XP_003638789.1| tRNA modification GTPase mnmE [Medicago truncatula]
gi|355504724|gb|AES85927.1| tRNA modification GTPase mnmE [Medicago truncatula]
Length = 543
Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/572 (72%), Positives = 465/572 (81%), Gaps = 37/572 (6%)
Query: 1 MAL-LPSLRSVITHQLH----HRPPPPPPLLSIASFLFHKPKLRRTTCKNLSFSFSSSSK 55
MA+ + S R V H LH +R PPP RTT ++ S SS
Sbjct: 1 MAMAMSSFRIVFRHILHTKINNRFFTPPP---------------RTTWRHSLLSSRISSS 45
Query: 56 PITLNPLATPKDNTLVFKKDERLVADNGESEEKAGTFSTIAAIVTSIGGPPGAVGIVRLS 115
+ T KD L+ E++ DN + A + +TIAAIVTS+GGPP AVGIVRLS
Sbjct: 46 TNYSYNVITNKDERLL----EQIENDNNNTNVVANS-TTIAAIVTSLGGPPAAVGIVRLS 100
Query: 116 GPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAVPMLAPR 175
GP AV I GRVF+P + +WRPTSHVVEYGVVLD GNVVDEV+AVPMLAPR
Sbjct: 101 GPHAVSIAGRVFRPARN---------TWRPTSHVVEYGVVLDSDGNVVDEVIAVPMLAPR 151
Query: 176 SYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKL 235
SYTREDVVELQCHG+EVCLRRVLR CLEAGATLAQPGEFTLRAFLNGRLDLSQAENV KL
Sbjct: 152 SYTREDVVELQCHGNEVCLRRVLRICLEAGATLAQPGEFTLRAFLNGRLDLSQAENVGKL 211
Query: 236 ISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKI 295
I+AKSVAAADAAL GIQGGFSSLV S+R +CI+LLTEIEARLDF+DEMPPL+LN +MDKI
Sbjct: 212 IAAKSVAAADAALEGIQGGFSSLVRSLRNQCIDLLTEIEARLDFEDEMPPLDLNGIMDKI 271
Query: 296 HAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRD 355
H MSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRD
Sbjct: 272 HHMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRD 331
Query: 356 VIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSED 415
VIEAS+ + G+P+TLLDTAGIR+TDDIVEKIGVERSEAVA GAD+IIMTVSAV+GWTSED
Sbjct: 332 VIEASININGIPITLLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWTSED 391
Query: 416 SELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNS---FNDHVFTCAVTGQG 472
++LL RIQS K+ST SSTP+ILV+NKIDC P A EW+K +S F+ VFTCAVT QG
Sbjct: 392 TKLLERIQSAKESTGSSTPVILVVNKIDCKPCAETEWDKGMHSHKIFSKQVFTCAVTSQG 451
Query: 473 IQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFWTID 532
+QDLE A+++IVG+ I +GGRRW VNQRQCEQL+RTKEALVRL+SSI+EELP+DFWTID
Sbjct: 452 LQDLERAVLEIVGMDGIASGGRRWTVNQRQCEQLVRTKEALVRLQSSIKEELPMDFWTID 511
Query: 533 LRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
LRDAAL+LGQISGEDISEEVLSNIFGKFCIGK
Sbjct: 512 LRDAALSLGQISGEDISEEVLSNIFGKFCIGK 543
>gi|42563304|ref|NP_177924.3| putative tRNA modification GTPase [Arabidopsis thaliana]
gi|51536472|gb|AAU05474.1| At1g78010 [Arabidopsis thaliana]
gi|52421301|gb|AAU45220.1| At1g78010 [Arabidopsis thaliana]
gi|332197936|gb|AEE36057.1| putative tRNA modification GTPase [Arabidopsis thaliana]
Length = 560
Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/577 (68%), Positives = 457/577 (79%), Gaps = 30/577 (5%)
Query: 1 MALLPSLRSVITHQLHHRPPPPPPLLSIASFLFHKPKLRRTTCKNLSFS-FSSSSKPITL 59
M L RSV + L P + ++ R KNL F FSSS K L
Sbjct: 1 MVSLLCFRSVGVYLLRQATP----------IITRGGRISRPISKNLCFVLFSSSPKTSLL 50
Query: 60 NPLA-TPKDNTLVFKKDERLVA-------DNGESEEKAGTFSTIAAIVTSIGGPPGAVGI 111
P A + ++N+LVFK DER+V D + ++ + STI AIVT IGGPPGAVGI
Sbjct: 51 KPRAQSSENNSLVFKGDERVVGLVGKVVDDAFDKVDRFQSSSTIVAIVTPIGGPPGAVGI 110
Query: 112 VRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAVPM 171
VRLSGP AV++ RVF+ KK KKK S S +WRP SH VEYG V+D +GNVVDEVLAVPM
Sbjct: 111 VRLSGPKAVEVARRVFRSAKKTKKKESDSDTWRPKSHFVEYGAVVDSNGNVVDEVLAVPM 170
Query: 172 LAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAEN 231
LAPRSYTREDVVELQCHGSEVCLRRVLR C+EAGA LA+PGEFTLRAFLNGRLDLSQAEN
Sbjct: 171 LAPRSYTREDVVELQCHGSEVCLRRVLRTCVEAGARLAEPGEFTLRAFLNGRLDLSQAEN 230
Query: 232 VEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLV 291
VEKLISAKS AAADAAL GIQGGFSSLV S+RA+CIELLTEIEARLDF+DEMPPL++ V
Sbjct: 231 VEKLISAKSSAAADAALEGIQGGFSSLVKSLRAQCIELLTEIEARLDFEDEMPPLDIESV 290
Query: 292 MDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAG 351
++KI +MSQDVE+AL+TANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTE+AG
Sbjct: 291 INKITSMSQDVESALDTANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEVAG 350
Query: 352 TTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGW 411
TTRDV+EA+VTV GVP+TLLDTAGIRET+DIVEKIGVERSE A ADVIIM VSAV+GW
Sbjct: 351 TTRDVVEANVTVRGVPITLLDTAGIRETNDIVEKIGVERSETAAKVADVIIMAVSAVEGW 410
Query: 412 TSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS----NEWNKVGNSFNDHVFTCA 467
T ED+ELL +IQS+K PMILV+NKIDCAP S + K F+ VFT A
Sbjct: 411 TEEDTELLRKIQSDK-------PMILVMNKIDCAPPGSCDQLEDQRKKEEVFHKSVFTSA 463
Query: 468 VTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLD 527
VTGQGI++LE AI++I+GL ++P GG +W VNQRQCEQL+RTKEALVRL+ +IE+E+P+D
Sbjct: 464 VTGQGIEELEDAILEILGLDRVPTGGHQWTVNQRQCEQLVRTKEALVRLREAIEDEIPID 523
Query: 528 FWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
FWTI+LR+AAL+L QISG+D+SEEVLS+IF KFCIGK
Sbjct: 524 FWTIELREAALSLAQISGQDVSEEVLSSIFAKFCIGK 560
>gi|6573766|gb|AAF17686.1|AC009243_13 F28K19.23 [Arabidopsis thaliana]
Length = 613
Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/561 (68%), Positives = 447/561 (79%), Gaps = 33/561 (5%)
Query: 37 KLRRTTCKNLSFS-FSSSSKPITLNPLATP-----------KDNTLVFKKDERLVA---- 80
++ R KNL F FSSS K L P A ++N+LVFK DER+V
Sbjct: 53 RISRPISKNLCFVLFSSSPKTSLLKPRAQSSGYKSYRNDSLENNSLVFKGDERVVGLVGK 112
Query: 81 ---DNGESEEKAGTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKS 137
D + ++ + STI AIVT IGGPPGAVGIVRLSGP AV++ RVF+ KK KKK
Sbjct: 113 VVDDAFDKVDRFQSSSTIVAIVTPIGGPPGAVGIVRLSGPKAVEVARRVFRSAKKTKKKE 172
Query: 138 SGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRV 197
S S +WRP SH VEYG V+D +GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRV
Sbjct: 173 SDSDTWRPKSHFVEYGAVVDSNGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRV 232
Query: 198 LRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSS 257
LR C+EAGA LA+PGEFTLRAFLNGRLDLSQAENVEKLISAKS AAADAAL GIQGGFSS
Sbjct: 233 LRTCVEAGARLAEPGEFTLRAFLNGRLDLSQAENVEKLISAKSSAAADAALEGIQGGFSS 292
Query: 258 LVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQS 317
LV S+RA+CIELLTEIEARLDF+DEMPPL++ V++KI +MSQDVE+AL+TANYDKLLQS
Sbjct: 293 LVKSLRAQCIELLTEIEARLDFEDEMPPLDIESVINKITSMSQDVESALDTANYDKLLQS 352
Query: 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIR 377
GLQIAIVGRPNVGKSSLLNAWSKSERAIVTE+AGTTRDV+EA+VTV GVP+TLLDTAGIR
Sbjct: 353 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEVAGTTRDVVEANVTVRGVPITLLDTAGIR 412
Query: 378 ETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTES------ 431
ET+DIVEKIGVERSE A ADVIIM VSAV+GWT ED+ELL +IQS+K
Sbjct: 413 ETNDIVEKIGVERSETAAKVADVIIMAVSAVEGWTEEDTELLRKIQSDKVGVSFYDLFGG 472
Query: 432 ----STPMILVINKIDCAPSAS----NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKI 483
PMILV+NKIDCAP S + K F+ VFT AVTGQGI++LE AI++I
Sbjct: 473 LLYLKQPMILVMNKIDCAPPGSCDQLEDQRKKEEVFHKSVFTSAVTGQGIEELEDAILEI 532
Query: 484 VGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQI 543
+GL ++P GG +W VNQRQCEQL+RTKEALVRL+ +IE+E+P+DFWTI+LR+AAL+L QI
Sbjct: 533 LGLDRVPTGGHQWTVNQRQCEQLVRTKEALVRLREAIEDEIPIDFWTIELREAALSLAQI 592
Query: 544 SGEDISEEVLSNIFGKFCIGK 564
SG+D+SEEVLS+IF KFCIGK
Sbjct: 593 SGQDVSEEVLSSIFAKFCIGK 613
>gi|297842581|ref|XP_002889172.1| hypothetical protein ARALYDRAFT_895691 [Arabidopsis lyrata subsp.
lyrata]
gi|297335013|gb|EFH65431.1| hypothetical protein ARALYDRAFT_895691 [Arabidopsis lyrata subsp.
lyrata]
Length = 560
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/577 (67%), Positives = 460/577 (79%), Gaps = 30/577 (5%)
Query: 1 MALLPSLRSVITHQLHHRPPPPPPLLSIASFLFHKPKLRRTTCKNLSFS-FSSSSKPITL 59
M L S RSV H L H P + ++ + KNL F FSSS K L
Sbjct: 1 MVNLLSFRSVGVHLLRHATP----------IITRGGRISKPFSKNLCFVLFSSSPKTSLL 50
Query: 60 NP-LATPKDNTLVFKKDERLVA-------DNGESEEKAGTFSTIAAIVTSIGGPPGAVGI 111
P A+ +D +LVF+ DER+V D ++ ++ + STI AIVT IGGPPGAVGI
Sbjct: 51 KPRAASSEDKSLVFRGDERVVGLVGKVVDDAFDNVDRFQSSSTIVAIVTPIGGPPGAVGI 110
Query: 112 VRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAVPM 171
VRLSGP AV++ RVF+ KK+KKK S S SW+P SH VEYGVV+D HGNVVDEVLAVPM
Sbjct: 111 VRLSGPKAVEVARRVFRSAKKRKKKDSDSDSWQPKSHFVEYGVVVDSHGNVVDEVLAVPM 170
Query: 172 LAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAEN 231
LAPRSYTREDVVELQCHGSEVCLRRVLR C+EAGA LA+PGEFTLRAFLNGRLDLSQAEN
Sbjct: 171 LAPRSYTREDVVELQCHGSEVCLRRVLRTCVEAGARLAEPGEFTLRAFLNGRLDLSQAEN 230
Query: 232 VEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLV 291
VEKLISAKS AAADAAL GIQGGFSSLV S+RA+CIELLTEIEARLDF+DEM PL++ V
Sbjct: 231 VEKLISAKSSAAADAALEGIQGGFSSLVKSLRAQCIELLTEIEARLDFEDEMTPLDIESV 290
Query: 292 MDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAG 351
++KI++MS+DVE+AL+TANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTE+AG
Sbjct: 291 INKINSMSEDVESALDTANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEVAG 350
Query: 352 TTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGW 411
TTRDV+EA+VTV GVP+T+LDTAGIRET+DIVEKIGVERSE A ADVIIM VSAV+GW
Sbjct: 351 TTRDVVEANVTVRGVPITVLDTAGIRETNDIVEKIGVERSETAAKVADVIIMAVSAVEGW 410
Query: 412 TSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS----NEWNKVGNSFNDHVFTCA 467
T ED+ELL +IQS+K PMILV+NKID AP +S + K F+ VFT A
Sbjct: 411 TEEDTELLRKIQSDK-------PMILVMNKIDSAPPSSCDQLEDQRKKEEVFHKSVFTSA 463
Query: 468 VTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLD 527
VTGQG+++LE AI++I+GL ++P GG +W VNQRQCEQL+RTKEAL RL+ +IE+E+P+D
Sbjct: 464 VTGQGLEELEDAILEILGLDRVPTGGHQWTVNQRQCEQLVRTKEALARLREAIEDEIPID 523
Query: 528 FWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
FWTI+LR+AALAL QISG+D+SEEVLS+IF KFCIGK
Sbjct: 524 FWTIELREAALALAQISGQDVSEEVLSSIFAKFCIGK 560
>gi|242079095|ref|XP_002444316.1| hypothetical protein SORBIDRAFT_07g020060 [Sorghum bicolor]
gi|241940666|gb|EES13811.1| hypothetical protein SORBIDRAFT_07g020060 [Sorghum bicolor]
Length = 548
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/529 (66%), Positives = 423/529 (79%), Gaps = 22/529 (4%)
Query: 50 FSSSSKPITLNPLATPKDNTLVFKKDERLVADNGESEEKAGTF-------------STIA 96
F + S P TL AT D TLV DER + + G TIA
Sbjct: 28 FLNPSSPRTL---ATRAD-TLVLPGDERSPSPSPSPSRLPGQLRPDYGGGGGGGAPGTIA 83
Query: 97 AIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVL 156
AIVTS+GG P AVGIVRLSGP AV + RVF+P ++ S W+P SH VEYG+ L
Sbjct: 84 AIVTSLGGGPAAVGIVRLSGPDAVAVADRVFRPAGARR----ASAPWQPRSHFVEYGLAL 139
Query: 157 DRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTL 216
D G+V+DEVL VPMLAPRSYTREDVVELQCHG+++CLRRVLRACLEAGA LA PGEFTL
Sbjct: 140 DADGSVIDEVLVVPMLAPRSYTREDVVELQCHGNDLCLRRVLRACLEAGARLADPGEFTL 199
Query: 217 RAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEAR 276
RAFLNGRLDL+QAENV +LISAKS A AD+ALAGIQGGFS+LV S+R++CIELLTEIEAR
Sbjct: 200 RAFLNGRLDLAQAENVSRLISAKSAAVADSALAGIQGGFSTLVRSLRSRCIELLTEIEAR 259
Query: 277 LDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLN 336
LDF+DEMPPL+L +++ KI+ M Q+V++AL+T+NYDKLLQSGLQIAI+GRPNVGKSSLLN
Sbjct: 260 LDFEDEMPPLDLVMLVSKINCMRQEVQDALDTSNYDKLLQSGLQIAIIGRPNVGKSSLLN 319
Query: 337 AWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396
AWSKSERAIVTEIAGTTRDV+EA+V++ GVPVTLLDTAGIRETDD+VEKIGV+RSEA A+
Sbjct: 320 AWSKSERAIVTEIAGTTRDVVEANVSIHGVPVTLLDTAGIRETDDVVEKIGVKRSEAAAM 379
Query: 397 GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE-WNKV 455
GAD+I+M +SAVDGWT +D++L+ + N+KS+ S+ PM+LVINK+DCAP E + +
Sbjct: 380 GADLIVMAISAVDGWTDDDTKLMEHVLINRKSSGSAVPMVLVINKVDCAPFVPGEQFEQF 439
Query: 456 GNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVR 515
F HV TCAVTG+GI DLE+A++++ G+ +P+ GRRW VNQRQ EQL+RTKEA +R
Sbjct: 440 SGLFIKHVQTCAVTGKGISDLESAVIEVRGIEHVPSEGRRWTVNQRQFEQLLRTKEAFLR 499
Query: 516 LKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L+SSI E+LP+DFWT+DLR+AALAL ISGEDISEEVLS+IF KFCIGK
Sbjct: 500 LESSINEQLPMDFWTVDLREAALALATISGEDISEEVLSSIFSKFCIGK 548
>gi|357147730|ref|XP_003574461.1| PREDICTED: tRNA modification GTPase MnmE-like [Brachypodium
distachyon]
Length = 543
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/521 (66%), Positives = 419/521 (80%), Gaps = 15/521 (2%)
Query: 53 SSKPITLNPLATPKDNTLVFKKDERL--------VADNGESEEKAGTFSTIAAIVTSIGG 104
S K +T P A +LV DERL A G+ TIAAIVTS+GG
Sbjct: 29 SPKTLTTRPGALRSIQSLVLPGDERLPPSSPSRRAAQPPLDYGGGGSPGTIAAIVTSLGG 88
Query: 105 PPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVD 164
P AVG+VRLSG AV + GRVF+P +K+ + +W+P SH VEYG LD G+V+D
Sbjct: 89 GPAAVGVVRLSGADAVAVAGRVFRPARKEPE------AWKPRSHFVEYGFALDGDGSVID 142
Query: 165 EVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRL 224
EVL VPMLAPRSYTREDVVELQCHG+++CLRRVL ACLEAGA LA PGEFTLRAFLNGRL
Sbjct: 143 EVLVVPMLAPRSYTREDVVELQCHGNDLCLRRVLGACLEAGARLADPGEFTLRAFLNGRL 202
Query: 225 DLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMP 284
DL+QAENV +LISAKS AAAD+ALAGIQGGFS+LV S+R++CIE LTEIEARLDF+DEMP
Sbjct: 203 DLAQAENVSRLISAKSTAAADSALAGIQGGFSTLVKSLRSRCIEFLTEIEARLDFEDEMP 262
Query: 285 PLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERA 344
PL+ +++ +I +M Q+V++AL+TANYD+LLQSGLQIAI+GRPNVGKSSLLNAWSKSERA
Sbjct: 263 PLDPMMLVSQITSMRQEVQDALDTANYDRLLQSGLQIAIIGRPNVGKSSLLNAWSKSERA 322
Query: 345 IVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMT 404
IVTEIAGTTRDV+EA+V++ G+PVTLLDTAGIRETDDIVEKIGVERSEA ALGAD++IMT
Sbjct: 323 IVTEIAGTTRDVVEANVSIHGIPVTLLDTAGIRETDDIVEKIGVERSEAAALGADMVIMT 382
Query: 405 VSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE-WNKVGNSFNDHV 463
+SAVDGWT +D++L+ + ++KK + S+ PM+LVINK+DC P S E + K F HV
Sbjct: 383 ISAVDGWTEDDTKLIEHVMNDKKLSGSAVPMVLVINKVDCKPFVSGEQFEKFSGIFRKHV 442
Query: 464 FTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEE 523
TCAVTG+GI +LE A++++ GL IP GGRRW VNQRQ EQL+RT+EA RL+SSI E+
Sbjct: 443 HTCAVTGKGISELERAVIEVRGLEPIPPGGRRWTVNQRQLEQLLRTQEAFKRLESSINEQ 502
Query: 524 LPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
LP+DFWTIDLR+AALAL I+GEDISEEVLS+IF KFCIGK
Sbjct: 503 LPMDFWTIDLREAALALATINGEDISEEVLSSIFSKFCIGK 543
>gi|37572951|dbj|BAC98601.1| putative tRNA modification GTPase trmE [Oryza sativa Japonica
Group]
Length = 552
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/472 (71%), Positives = 405/472 (85%), Gaps = 7/472 (1%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAIVTS+GG P AVGIVRLSGP A + GRVF+P ++ + WRP SH VEYG
Sbjct: 87 TIAAIVTSLGGGPAAVGIVRLSGPDAAAVAGRVFRPARR------AAPPWRPRSHFVEYG 140
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
V LDR G V+DEVL VPMLAPRSYTREDVVELQCHG+++CLRRVLRACLEAGA LA PGE
Sbjct: 141 VALDRDGGVIDEVLVVPMLAPRSYTREDVVELQCHGNDLCLRRVLRACLEAGARLADPGE 200
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT+RAFLNGRLDL+QAENV +LISAKS AAAD+ALAGIQGGFS+LV S+R++CIELLTEI
Sbjct: 201 FTVRAFLNGRLDLAQAENVSRLISAKSAAAADSALAGIQGGFSALVKSLRSRCIELLTEI 260
Query: 274 EARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSS 333
EARLDF+DE+PPL+L +++ KI+ M Q+V++AL+TANYDKLLQSGLQ+AI+GRPNVGKSS
Sbjct: 261 EARLDFEDELPPLDLTMLVSKINGMRQEVQDALDTANYDKLLQSGLQVAIIGRPNVGKSS 320
Query: 334 LLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEA 393
LLNAWSKSERAIVTEIAGTTRDV+EA+V++ G+P+TLLDTAGIRETDDIVEKIGVERSEA
Sbjct: 321 LLNAWSKSERAIVTEIAGTTRDVVEANVSIHGIPITLLDTAGIRETDDIVEKIGVERSEA 380
Query: 394 VALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE-W 452
ALGAD+IIMT+SAVDGWT +D++L+ + +KKS+ + PM+LVINK+DCAP S E +
Sbjct: 381 AALGADLIIMTISAVDGWTEDDTKLIEHVLISKKSSGAPVPMVLVINKVDCAPFISGEQF 440
Query: 453 NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEA 512
+ F HV TCAVTG+GI +LE AI+++ GL +P+ GRRW VNQRQ EQL+RT++A
Sbjct: 441 EQFHGVFKKHVQTCAVTGKGISELEKAIIEVRGLEPVPSEGRRWTVNQRQFEQLLRTQQA 500
Query: 513 LVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
RL+SSI E+LP+DFWTIDLR+AALAL ISGEDISEEVLS+IF KFCIGK
Sbjct: 501 FTRLESSINEQLPMDFWTIDLREAALALATISGEDISEEVLSSIFSKFCIGK 552
>gi|413922220|gb|AFW62152.1| tRNA modification GTPase trmE [Zea mays]
Length = 545
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/554 (63%), Positives = 432/554 (77%), Gaps = 25/554 (4%)
Query: 15 LHHRPPPPPPLLSIASFLFHKPKLRRTTCKNLSFSFSSSSKPITLNPLATPKDNTLVFKK 74
L R PPPP LL F P RT+ + ++ L P D L F
Sbjct: 13 LPWRRPPPPCLLRRG---FLNPSSPRTSAR--------------VDTLVLPGDERLPFPS 55
Query: 75 DERL---VADNGESEEKAGTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVK 131
RL + + S G STIAAIVTS+GG P AVGIVR+SGP AV + RVF+P
Sbjct: 56 PPRLPNQLRPDYGSGGGGGAPSTIAAIVTSLGGGPAAVGIVRISGPDAVAVADRVFRPAG 115
Query: 132 KKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSE 191
++ S W+P SH VEYG+ LD G+V+DEVL VPML+PRSYTREDVVELQCHG++
Sbjct: 116 TRR----ASTPWQPRSHFVEYGLALDADGSVIDEVLVVPMLSPRSYTREDVVELQCHGND 171
Query: 192 VCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGI 251
+CLRRVLRACLEAGA LA PGEFTLRAFLNGRLDL+QAENV +LISAKS AAAD+ALAGI
Sbjct: 172 LCLRRVLRACLEAGARLADPGEFTLRAFLNGRLDLAQAENVSRLISAKSAAAADSALAGI 231
Query: 252 QGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANY 311
QGGFS+LV S+R++CIELLTEIEARLDF+DEMPPL+ +++ KI+ M ++V++AL+T+NY
Sbjct: 232 QGGFSTLVKSLRSRCIELLTEIEARLDFEDEMPPLDPVMLVSKINCMRKEVQDALDTSNY 291
Query: 312 DKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLL 371
DKLLQSGLQIAI+GRPNVGKSSLLNAWSKSERAIVTEIAGTTRDV+EA+V++ GVPVTLL
Sbjct: 292 DKLLQSGLQIAIIGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVVEANVSINGVPVTLL 351
Query: 372 DTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTES 431
DTAGIRETDD+VEKIGV+RSEA A+GAD+I+M +SAVDGWT +D++L+ + N+KS+ S
Sbjct: 352 DTAGIRETDDVVEKIGVKRSEAAAMGADLIVMAISAVDGWTDDDTKLMEHVSVNRKSSGS 411
Query: 432 STPMILVINKIDCAPSASNE-WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIP 490
+ PM+LVINK+DCAP E + + F HV TCAVTG+GI DLE+A++++ G+ +P
Sbjct: 412 AVPMVLVINKVDCAPFVPGEQFKQFSGLFRKHVQTCAVTGKGISDLESAVIEVRGIEHVP 471
Query: 491 AGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISE 550
+ GRRW VNQRQ EQL+RTKEA RL+SSI E+LP+DFWT+DLR+AALAL ISGEDISE
Sbjct: 472 SEGRRWTVNQRQFEQLLRTKEAFARLESSINEQLPMDFWTVDLREAALALATISGEDISE 531
Query: 551 EVLSNIFGKFCIGK 564
EVLS+IF KFCIGK
Sbjct: 532 EVLSSIFSKFCIGK 545
>gi|226490853|ref|NP_001149416.1| LOC100283042 [Zea mays]
gi|195627080|gb|ACG35370.1| tRNA modification GTPase trmE [Zea mays]
Length = 546
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/473 (70%), Positives = 405/473 (85%), Gaps = 5/473 (1%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
STIAAIVTS+GG P AVGIVR+SGP AV + RVF+P ++ S W+P SH VEY
Sbjct: 78 STIAAIVTSLGGGPAAVGIVRISGPDAVAVADRVFRPAGTRR----ASTPWQPRSHFVEY 133
Query: 153 GVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
G+ LD G+V+DEVL VPML+PRSYTREDVVELQCHG+++CLRR+LRACLEAGA LA PG
Sbjct: 134 GLALDADGSVIDEVLVVPMLSPRSYTREDVVELQCHGNDLCLRRLLRACLEAGARLADPG 193
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFTLRAFLNGRLDL+QAENV +LISAKS AAAD+ALAGIQGGFS+LV S+R++CIELLTE
Sbjct: 194 EFTLRAFLNGRLDLAQAENVSRLISAKSAAAADSALAGIQGGFSTLVKSLRSRCIELLTE 253
Query: 273 IEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
IEARLDF+DEMPPL+ +++ KI+ M ++V++AL+T+NYDKLLQSGLQIAI+GRPNVGKS
Sbjct: 254 IEARLDFEDEMPPLDPVMLVSKINCMRKEVQDALDTSNYDKLLQSGLQIAIIGRPNVGKS 313
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNAWSKSERAIVTEIAGTTRDV+EA+V++ GVPVTLLDTAGIRETDD+VEKIGV+RSE
Sbjct: 314 SLLNAWSKSERAIVTEIAGTTRDVVEANVSIHGVPVTLLDTAGIRETDDVVEKIGVKRSE 373
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE- 451
A A+GAD+I+M +SAVDGWT +D++L+ + N+KS+ S+ PM+LVINK+DCAP E
Sbjct: 374 AAAMGADLIVMAISAVDGWTDDDTKLMEHVSVNRKSSGSAVPMVLVINKVDCAPFVPGEQ 433
Query: 452 WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKE 511
+ + F HV TCAVTG+GI DLE+A++++ G+ +P+ GRRW VNQRQ EQL+RTKE
Sbjct: 434 FKQFSGLFRKHVQTCAVTGKGISDLESAVIEVRGIEHVPSEGRRWTVNQRQFEQLLRTKE 493
Query: 512 ALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
A RL+SSI E+LP+DFWT+DLR+AALAL ISGEDISEEVLS+IF KFCIGK
Sbjct: 494 AFARLESSINEQLPMDFWTVDLREAALALATISGEDISEEVLSSIFSKFCIGK 546
>gi|147772302|emb|CAN64562.1| hypothetical protein VITISV_038233 [Vitis vinifera]
Length = 434
Score = 602 bits (1553), Expect = e-169, Method: Compositional matrix adjust.
Identities = 303/364 (83%), Positives = 333/364 (91%), Gaps = 1/364 (0%)
Query: 201 CLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVT 260
C G GEFTLRAFLNGRLDLSQAENV KLISAKS+AAADAALAGIQGGFSSLV
Sbjct: 44 CANKGKESGVGGEFTLRAFLNGRLDLSQAENVGKLISAKSIAAADAALAGIQGGFSSLVR 103
Query: 261 SVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQ 320
S+R +CIELLTEIEARLDFDDEMPPL+LNL+MDKIH MSQDVENALETANYD+LLQSGLQ
Sbjct: 104 SLRIQCIELLTEIEARLDFDDEMPPLDLNLIMDKIHXMSQDVENALETANYDQLLQSGLQ 163
Query: 321 -IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRET 379
IAI+GRPNVGKSSLLNAWSKSERAIVTEIAGTTRDV+EASV++ G+PVTLLDTAGIRET
Sbjct: 164 VIAIIGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVVEASVSIHGIPVTLLDTAGIRET 223
Query: 380 DDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVI 439
DDIVEKIGVERSEAVA+ ADVIIMT+SA+DGWTS+D++L NRI SNKK ESSTP+ILV+
Sbjct: 224 DDIVEKIGVERSEAVAISADVIIMTISALDGWTSQDTKLFNRIISNKKFVESSTPVILVV 283
Query: 440 NKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVN 499
NKIDCAPSA E GNSF+ H+FTCAVTGQGI DLE+AI++IVGL++IPAGGRRW VN
Sbjct: 284 NKIDCAPSACTELFMXGNSFSKHIFTCAVTGQGISDLESAIIEIVGLNKIPAGGRRWTVN 343
Query: 500 QRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGK 559
QRQCEQL+RTKEAL RL SSIEEE+PLDFWTIDLR+AALALGQISGEDISEEVL+NIFGK
Sbjct: 344 QRQCEQLVRTKEALARLISSIEEEMPLDFWTIDLREAALALGQISGEDISEEVLTNIFGK 403
Query: 560 FCIG 563
FCIG
Sbjct: 404 FCIG 407
>gi|167999799|ref|XP_001752604.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696135|gb|EDQ82475.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 481
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 282/484 (58%), Positives = 359/484 (74%), Gaps = 24/484 (4%)
Query: 102 IGGPPGAVGIVRLSGPMAVDIVGRVFKPVK--KKKKKSSGSGSWRPTSHVVEYGVVLDRH 159
+GG GAV IVRLSG AV IVGR+F+ K + K+ S + W P SH V+YG ++D
Sbjct: 1 MGGQQGAVAIVRLSGNSAVKIVGRLFRTAKTMRNKENSHLNNEWNPKSHRVQYGNLIDAS 60
Query: 160 GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAF 219
G +VDEVL +PMLAPRSYTREDVVELQCHG +VC+RRVL+ CLEAGA LAQPGEFTLRAF
Sbjct: 61 GTLVDEVLVLPMLAPRSYTREDVVELQCHGGDVCVRRVLQLCLEAGARLAQPGEFTLRAF 120
Query: 220 LNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDF 279
LNGRLDL+QAE+V +L++AK+ AA +ALAGIQGG S+ V S+R +CI+LL E+EARLDF
Sbjct: 121 LNGRLDLAQAESVAQLVAAKTSVAAQSALAGIQGGLSAFVQSLRMECIDLLVEMEARLDF 180
Query: 280 DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWS 339
DDEMP L++N ++ +I M Q ++ AL TA +LLQSGLQ+AIVGRPNVGKSSLLNAWS
Sbjct: 181 DDEMPNLDINALITRIETMCQRLQQALATAGRGRLLQSGLQVAIVGRPNVGKSSLLNAWS 240
Query: 340 KSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGAD 399
+SERAIVT+I GTTRD++EA + V G+ V LLDTAGIR+T D+VEKIGVERSEAVA AD
Sbjct: 241 QSERAIVTDIPGTTRDIVEARMVVGGIAVNLLDTAGIRDTADLVEKIGVERSEAVAKAAD 300
Query: 400 VIIMTVSAVDGWTSEDSELLNRI------------------QSNKKSTESSTPMILVINK 441
VI+M +SA DGWT D + RI + S TP +LV+NK
Sbjct: 301 VIVMVISASDGWTPADEIIFQRIWGTDGILRQRKEQTGGECEDQPGSGSVQTPSLLVVNK 360
Query: 442 IDCAPSASNEW-NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQ 500
+D A + S +V N+F V TCA G G+Q+L+ AI+ +VGL + + G++WA
Sbjct: 361 VDRAAAGSVILPQEVQNAFFKRVATCATQGVGLQELDFAILDLVGLGHVSSEGQQWA--- 417
Query: 501 RQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKF 560
RQ EQL+R +EAL R+ S++ ++PLD WTIDL++AA+ALG+ISG+D+SEEVL+NIF +F
Sbjct: 418 RQAEQLVRAQEALRRVVESVQLDIPLDMWTIDLKEAAIALGEISGDDVSEEVLTNIFNRF 477
Query: 561 CIGK 564
CIGK
Sbjct: 478 CIGK 481
>gi|302780125|ref|XP_002971837.1| hypothetical protein SELMODRAFT_96586 [Selaginella moellendorffii]
gi|300160136|gb|EFJ26754.1| hypothetical protein SELMODRAFT_96586 [Selaginella moellendorffii]
Length = 469
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 273/483 (56%), Positives = 351/483 (72%), Gaps = 28/483 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAIVT + G GAV IVR+SGP AV + +F+P++KKK W P SH V YG
Sbjct: 3 TIAAIVTPLCGKQGAVAIVRMSGPSAVSVAQAIFRPLRKKK--------WIPQSHKVVYG 54
Query: 154 VVLDR-HGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+++ ++DEV+ VPMLAPRSYTREDVVE+QCHG +VC+RR+L CL+ GA LAQPG
Sbjct: 55 TIIEYPKETIIDEVIIVPMLAPRSYTREDVVEIQCHGGDVCVRRILDLCLQHGARLAQPG 114
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQ-----GGFSSLVTSVRAKCI 267
EFTLRAFLNGR+DLSQAENV +L+SAK+ +AA+ ALAG+Q GG S+ V S+R++CI
Sbjct: 115 EFTLRAFLNGRIDLSQAENVAQLVSAKTASAAETALAGLQARKIFGGLSNFVRSMRSQCI 174
Query: 268 ELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
ELL EI+A +DF+DE+ PL+++ +M+ + ++S VE ALETA +LLQSG+Q+AIVGRP
Sbjct: 175 ELLAEIDAHVDFEDELAPLDVDKIMEAVGSVSAQVEQALETAARGRLLQSGIQVAIVGRP 234
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI- 386
NVGKSSLLN WS+SERAIVT++AGTTRD++EA V V GVPV LLDTAGIR T+D VE I
Sbjct: 235 NVGKSSLLNGWSQSERAIVTDVAGTTRDIVEADVVVSGVPVRLLDTAGIRITEDPVESIA 294
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID--C 444
GV+RS+A A GADV++M ++A DGWT+ D + + K P ILV+NKID C
Sbjct: 295 GVQRSQAAATGADVLVMVINACDGWTTGDKLIFDHTLQQK-------PWILVMNKIDQVC 347
Query: 445 APSASNEWNKVGNSFNDHVFTCAVT-GQGIQDLETAIMKIVGLHQ--IPAGGRRWAVNQR 501
+ V +F+ V TCAV I L+TA+ ++ AG + WAVN+R
Sbjct: 348 GGDVTIP-EDVRAAFSAVVSTCAVKEALDIDKLDTALAALIAAGGDVFSAGQQHWAVNER 406
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
Q EQL+R K+AL RL+ S EELP+D WT+DLRD LALGQISG+D+SEEVL+NIF +FC
Sbjct: 407 QKEQLIRAKQALERLRQSAHEELPVDLWTVDLRDTILALGQISGDDVSEEVLANIFSRFC 466
Query: 562 IGK 564
IGK
Sbjct: 467 IGK 469
>gi|302781180|ref|XP_002972364.1| hypothetical protein SELMODRAFT_97275 [Selaginella moellendorffii]
gi|300159831|gb|EFJ26450.1| hypothetical protein SELMODRAFT_97275 [Selaginella moellendorffii]
Length = 469
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 273/483 (56%), Positives = 351/483 (72%), Gaps = 28/483 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAIVT + G GAV IVR+SGP AV + +F+P++KKK W P SH V YG
Sbjct: 3 TIAAIVTPLCGKQGAVAIVRMSGPSAVSVAQAIFRPLRKKK--------WIPQSHRVVYG 54
Query: 154 VVLDR-HGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+++ ++DEV+ VPMLAPRSYTREDVVE+QCHG +VC+RR+L CL+ GA LAQPG
Sbjct: 55 TIIEYPKETIIDEVIIVPMLAPRSYTREDVVEIQCHGGDVCVRRILDLCLQHGARLAQPG 114
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQ-----GGFSSLVTSVRAKCI 267
EFTLRAFLNGR+DLSQAENV +L+SAK+ +AA+ ALAG+Q GG S+ V S+R++CI
Sbjct: 115 EFTLRAFLNGRIDLSQAENVAQLVSAKTASAAETALAGLQARKIFGGLSNFVRSMRSQCI 174
Query: 268 ELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
ELL EI+A +DF+DE+ PL+++ +M+ + ++S VE ALETA +LLQSG+Q+AIVGRP
Sbjct: 175 ELLAEIDAHVDFEDELAPLDVDKIMEAVGSVSAQVEQALETAARGRLLQSGIQVAIVGRP 234
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI- 386
NVGKSSLLN WS+SERAIVT++AGTTRD++EA V V GVPV LLDTAGIR T+D VE I
Sbjct: 235 NVGKSSLLNGWSQSERAIVTDVAGTTRDIVEADVVVSGVPVRLLDTAGIRITEDPVESIA 294
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID--C 444
GV+RS+A A GADV++M ++A DGWT+ D + + T P ILV+NKID C
Sbjct: 295 GVQRSQAAATGADVLVMVINACDGWTTGDKLIFDH-------TLQQQPWILVMNKIDQVC 347
Query: 445 APSASNEWNKVGNSFNDHVFTCAVT-GQGIQDLETAIMKIVGLHQ--IPAGGRRWAVNQR 501
+ V +F+ V TCAV I L+TA+ ++ AG + WAVN+R
Sbjct: 348 EGDVTIP-EDVRAAFSAVVSTCAVKEALDIDKLDTALAALIAAGGDVFSAGQQHWAVNER 406
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
Q EQL+R K+AL RL+ S EELP+D WT+DLRD LALGQISG+D+SEEVL+NIF +FC
Sbjct: 407 QKEQLIRAKQALERLRQSAHEELPVDLWTVDLRDTILALGQISGDDVSEEVLANIFSRFC 466
Query: 562 IGK 564
IGK
Sbjct: 467 IGK 469
>gi|222640528|gb|EEE68660.1| hypothetical protein OsJ_27256 [Oryza sativa Japonica Group]
Length = 415
Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust.
Identities = 265/409 (64%), Positives = 320/409 (78%), Gaps = 43/409 (10%)
Query: 199 RACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAA-------------- 244
RACLEAGA LA PGEFT+RAFLNGRLDL+QAENV +LISAKS AAA
Sbjct: 7 RACLEAGARLADPGEFTVRAFLNGRLDLAQAENVSRLISAKSAAAADSALAGIQVREFTV 66
Query: 245 --------DAALA--------------------GIQGGFSSLVTSVRAKCIELLTEIEAR 276
D A A GIQGGFS+LV S+R++CIELLTEIEAR
Sbjct: 67 RAFLNGRLDLAQAENVSRLISAKSAAAADSALAGIQGGFSALVKSLRSRCIELLTEIEAR 126
Query: 277 LDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLN 336
LDF+DE+PPL+L +++ KI+ M Q+V++AL+TANYDKLLQSGLQ+AI+GRPNVGKSSLLN
Sbjct: 127 LDFEDELPPLDLTMLVSKINGMRQEVQDALDTANYDKLLQSGLQVAIIGRPNVGKSSLLN 186
Query: 337 AWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396
AWSKSERAIVTEIAGTTRDV+EA+V++ G+P+TLLDTAGIRETDDIVEKIGVERSEA AL
Sbjct: 187 AWSKSERAIVTEIAGTTRDVVEANVSIHGIPITLLDTAGIRETDDIVEKIGVERSEAAAL 246
Query: 397 GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE-WNKV 455
GAD+IIMT+SAVDGWT +D++L+ + +KKS+ + PM+LVINK+DCAP S E + +
Sbjct: 247 GADLIIMTISAVDGWTEDDTKLIEHVLISKKSSGAPVPMVLVINKVDCAPFISGEQFEQF 306
Query: 456 GNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVR 515
F HV TCAVTG+GI +LE AI+++ GL +P+ GRRW VNQRQ EQL+RT++A R
Sbjct: 307 HGVFKKHVQTCAVTGKGISELEKAIIEVRGLEPVPSEGRRWTVNQRQFEQLLRTQQAFTR 366
Query: 516 LKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L+SSI E+LP+DFWTIDLR+AALAL ISGEDISEEVLS+IF KFCIGK
Sbjct: 367 LESSINEQLPMDFWTIDLREAALALATISGEDISEEVLSSIFSKFCIGK 415
>gi|307110642|gb|EFN58878.1| hypothetical protein CHLNCDRAFT_19706, partial [Chlorella
variabilis]
Length = 477
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 254/490 (51%), Positives = 342/490 (69%), Gaps = 32/490 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKK----------------- 136
TIAAIVT G GAV I+R+SG AV I +VF P +++
Sbjct: 1 TIAAIVT--GAAQGAVSIIRVSGADAVAIAQQVFAPYSAQRRHAAAAGPAARQAPAAGHP 58
Query: 137 --SSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCL 194
++ + +W+P SH V YG +D G V+DEVL + MLAPRSYT EDVVE+ HG V
Sbjct: 59 DPATHAAAWQPESHRVYYGTAIDAGGTVLDEVLLLTMLAPRSYTAEDVVEVHTHGGGVSA 118
Query: 195 RRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGG 254
RVL+ CLEAGA LAQPGEFTLRAFLNGRLDLSQAE+V +LI A++VAAAD+ALAG+ GG
Sbjct: 119 ARVLQRCLEAGARLAQPGEFTLRAFLNGRLDLSQAESVAQLIDARTVAAADSALAGLSGG 178
Query: 255 FSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKL 314
V +R +C++LL E++ARLDFD+++PPL++ ++D+I +SQ +E L+TA + +L
Sbjct: 179 LGREVQRMRRECVDLLVEMDARLDFDEDLPPLDVPGLIDRIRRLSQQLEATLQTARHGQL 238
Query: 315 LQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTA 374
L++GLQ+A+VGRPNVGKSSLLNA S +ERAIVT IAGTTRD++EA V + G+P+TLLDTA
Sbjct: 239 LRTGLQVALVGRPNVGKSSLLNALSGTERAIVTHIAGTTRDIVEAGVVIGGIPITLLDTA 298
Query: 375 GIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTP 434
G+RE+ D+VE+IGVERS A A AD+++M + A GWT D+E+ +I ++S+
Sbjct: 299 GLRESVDLVEQIGVERSMAAARQADIVLMVLDAQAGWTPGDAEIAAQITPAAAGADASS- 357
Query: 435 MILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGR 494
++ P+ VG+ F V T A T +G+QDL+ A++ + G Q+ GG
Sbjct: 358 ---AARQLGVPPA-------VGSRFAAVVSTSAATREGLQDLQQAVLSLAGAPQLAPGGI 407
Query: 495 RWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLS 554
WAVN+RQ E L+R EAL R++ SI +ELP+DFWTIDLR A LALG++SGED++EEVL
Sbjct: 408 SWAVNERQGEALIRASEALQRVQGSIADELPVDFWTIDLRAAVLALGEVSGEDVTEEVLD 467
Query: 555 NIFGKFCIGK 564
+IF +FCIGK
Sbjct: 468 SIFSRFCIGK 477
>gi|159481624|ref|XP_001698878.1| hypothetical protein CHLREDRAFT_121098 [Chlamydomonas reinhardtii]
gi|158273370|gb|EDO99160.1| predicted protein [Chlamydomonas reinhardtii]
Length = 465
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 249/466 (53%), Positives = 333/466 (71%), Gaps = 19/466 (4%)
Query: 105 PPG----AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHG 160
PPG +V I+RLSG AV I + F+P + + W P SH V YG +D
Sbjct: 13 PPGLSAGSVSIIRLSGTEAVPIALKAFRPGGRFRI------GWSPASHRVYYGTAVDGDE 66
Query: 161 NVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFL 220
NV+DEVL + ML+PRSYT EDVVE CHG VC RV RA +EAGA A+PGEFTLRAFL
Sbjct: 67 NVLDEVLLLVMLSPRSYTAEDVVEFHCHGGGVCAARVQRALIEAGARPAKPGEFTLRAFL 126
Query: 221 NGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFD 280
NGRLDL+QAE+V +L+ A++ AAAD+ALAG++GG S V+ +R +C++LL E+EARLDFD
Sbjct: 127 NGRLDLAQAESVSELVGARTAAAADSALAGLRGGVGSAVSDMRRQCLDLLAELEARLDFD 186
Query: 281 DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSK 340
+++PP+++ + +I A+ +E AL TA LL+ GLQ+AIVGRPNVGKSSLLNAW+
Sbjct: 187 EDLPPIDVPALKSQIEAIQAGIEKALRTARAGSLLRRGLQVAIVGRPNVGKSSLLNAWTN 246
Query: 341 SERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADV 400
S+RAIVTEIAGTTRDV+EA ++V GVPVTLLDTAGIR++ D+VE+IGVERS+A A ADV
Sbjct: 247 SDRAIVTEIAGTTRDVLEAQLSVGGVPVTLLDTAGIRDSTDVVERIGVERSQAAAAAADV 306
Query: 401 IIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDC-APSASNEWNKVGNSF 459
+IM V + +GWT D+E+ +S P +LV NK D A A+ + + ++F
Sbjct: 307 VIMVVDSAEGWTDADTEIY-------RSLWGDGPALLVANKDDLRAAGAAIQLVERQSTF 359
Query: 460 NDHVFTCAVTGQGIQDLETAIMKIVGLHQIPA-GGRRWAVNQRQCEQLMRTKEALVRLKS 518
+ V T A +G++ L+ A++ + G Q+ A GG WAVN+RQ E L+R+ EAL+RL
Sbjct: 360 SATVRTSASQRKGLESLDAALLDLAGAPQLAASGGVSWAVNERQAEALVRSHEALMRLSE 419
Query: 519 SIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
S+ +LPLDFWTIDLR A LALG++SG++++EEVL N+F +FCIGK
Sbjct: 420 SVAADLPLDFWTIDLRSALLALGEVSGDEVAEEVLDNVFSRFCIGK 465
>gi|428300866|ref|YP_007139172.1| tRNA modification GTPase trmE [Calothrix sp. PCC 6303]
gi|428237410|gb|AFZ03200.1| tRNA modification GTPase trmE [Calothrix sp. PCC 6303]
Length = 460
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 245/482 (50%), Positives = 327/482 (67%), Gaps = 28/482 (5%)
Query: 87 EKAGTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT 146
E T TIAAI T+I G+VGIVRLSG AV+I ++F+ + G W
Sbjct: 3 ETFATTGTIAAIATAIVPQQGSVGIVRLSGMEAVNIATKLFQ--------TPGKQIWE-- 52
Query: 147 SHVVEYGVVLDRHGN---VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLE 203
SH + YG + RH VVDE L + M APRSYTREDVVE CHG + ++ VL+ CLE
Sbjct: 53 SHRILYGYI--RHPQTQVVVDEALLLLMKAPRSYTREDVVEFHCHGGIMAVQHVLKLCLE 110
Query: 204 AGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVR 263
GA LAQPGEFTLRAFLNGR+DLSQAE++ L+ AKS AA ALAG+QG + + +R
Sbjct: 111 GGARLAQPGEFTLRAFLNGRIDLSQAESIADLVGAKSPQAAQTALAGLQGKLAQPIRELR 170
Query: 264 AKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
++C++LL EIEAR+DF+D++PPL+ VM + A++ + L TA+ +LL++GL++AI
Sbjct: 171 SRCLDLLAEIEARIDFEDDLPPLDYKYVMAEFAAITAAINGILATADRGELLRTGLKVAI 230
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383
VGRPNVGKSSLLNAWS+S+RAIVT + GTTRDV+E+ + V G+P+ +LDTAGIRETDD V
Sbjct: 231 VGRPNVGKSSLLNAWSRSDRAIVTPLPGTTRDVVESQLVVGGIPIQVLDTAGIRETDDTV 290
Query: 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443
EKIGV RS+ A AD++++T+ A GWT ED E+ ++ P+ILVINKID
Sbjct: 291 EKIGVMRSQKAADSADLVLLTIDASQGWTVEDGEIYTKVNHR--------PLILVINKID 342
Query: 444 CA-PSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQ 502
A P N ++ D V T A +GI LE AI+K V L ++ A +A+NQRQ
Sbjct: 343 LALPENVNYPPEI----QDTVETAAAVNKGIDALEIAILKKVQLGKVQAADLDFAINQRQ 398
Query: 503 CEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCI 562
L++ + +L + + +IE+ LPLDFWTIDLRDA ALG+I+GE+++E VL IF +FCI
Sbjct: 399 AAALVKAQISLQQTQVTIEQNLPLDFWTIDLRDAIYALGEITGEEVTESVLERIFARFCI 458
Query: 563 GK 564
GK
Sbjct: 459 GK 460
>gi|427733819|ref|YP_007053363.1| tRNA modification GTPase trmE [Rivularia sp. PCC 7116]
gi|427368860|gb|AFY52816.1| tRNA modification GTPase trmE [Rivularia sp. PCC 7116]
Length = 464
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 235/482 (48%), Positives = 323/482 (67%), Gaps = 24/482 (4%)
Query: 87 EKAGTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT 146
E T TIAAI T++ G+VGIVR+SG AV I +F G
Sbjct: 3 ETFATTGTIAAIATAVVPQQGSVGIVRVSGEEAVQIAECIFH----------APGKQVIE 52
Query: 147 SHVVEYGVVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLE 203
SH + YG + RH +VDE L + M APRSYTREDVVE CHG + +++VL+ CLE
Sbjct: 53 SHRILYGYI--RHPQTQKLVDEALLLVMKAPRSYTREDVVEFHCHGGIMAVQQVLKLCLE 110
Query: 204 AGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVR 263
GA LAQPGEFTLRAFLNGR+DLSQAE++ L+ AKS AA ALAG+QG + + +R
Sbjct: 111 QGARLAQPGEFTLRAFLNGRIDLSQAESISDLVGAKSPQAAQTALAGLQGKLADSIRHLR 170
Query: 264 AKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
AKC++++ EIEAR+DF++++PPL+ ++ I ++ + + TA+ +LL++GL++AI
Sbjct: 171 AKCLDIVAEIEARIDFEEDLPPLDYKAIVSDIEKITTRITELIATADKGELLRTGLKVAI 230
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383
VGRPNVGKSSLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIR+T+D V
Sbjct: 231 VGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRDTEDTV 290
Query: 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443
EKIGVERS + A AD+++ T+ A GWT ED + +++ P+IL INKID
Sbjct: 291 EKIGVERSRSAAQAADLVLFTIDATTGWTKEDELIYEQVKHR--------PLILAINKID 342
Query: 444 CAPSASNEWNKVG-NSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQ 502
++ N+ ++ + +FT A QGI++LE AI++ V + I A AVNQRQ
Sbjct: 343 LLENSQNKSSQYQIENIKSQIFTAAAKNQGIEELEAAILEQVHMGNIQASDMDLAVNQRQ 402
Query: 503 CEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCI 562
L++ K +L +++ +IEEELP DFWTIDLR A ALG+I+GE+ +E VL IF KFCI
Sbjct: 403 AAALIKAKTSLEQVQLTIEEELPFDFWTIDLRGAINALGEITGEEATESVLDRIFSKFCI 462
Query: 563 GK 564
GK
Sbjct: 463 GK 464
>gi|434405796|ref|YP_007148681.1| tRNA modification GTPase trmE [Cylindrospermum stagnale PCC 7417]
gi|428260051|gb|AFZ26001.1| tRNA modification GTPase trmE [Cylindrospermum stagnale PCC 7417]
Length = 463
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 236/474 (49%), Positives = 324/474 (68%), Gaps = 23/474 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+I G+VGIVR+SG A+ I +F + G W SH + YG
Sbjct: 10 TIAAIATAIVPQQGSVGIVRVSGFHAMAIAQTLFD--------APGRQVWE--SHRILYG 59
Query: 154 VVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
+ RH +VDE L + M APRSYTREDVVE CHG + +++VL+ CLE GA LAQ
Sbjct: 60 YI--RHPQTQEIVDEALLLIMKAPRSYTREDVVEFHCHGGIMAVQQVLQLCLEGGARLAQ 117
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFTLRAFLNGRLDL+QAE++ L+ A+S AA ALAG+QG + + +RA C+++L
Sbjct: 118 PGEFTLRAFLNGRLDLTQAESIADLVGARSPQAAQTALAGLQGKLAHPIRQLRANCLDIL 177
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
EIEAR+DF++++PPL++N ++ +I ++ D+ L T + +LL++GL++AIVGRPNVG
Sbjct: 178 AEIEARIDFEEDLPPLHINSIISEIDKIAADITKLLATKDKGELLRTGLKVAIVGRPNVG 237
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIRET D VEKIGVER
Sbjct: 238 KSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVAGIPVQVLDTAGIRETVDQVEKIGVER 297
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S A AD++++T+ A DGWT D E+ ++Q P+ILVINKID +A
Sbjct: 298 SRRAANAADLVLLTIDAADGWTQGDEEIYTQVQHR--------PLILVINKIDLVQTALI 349
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+ + N V T A QGI LETAI++IV ++ A A+NQRQ L + K
Sbjct: 350 TSWEYPKTINQIVTTSASQNQGIDGLETAILEIVQTGKVQAADMDLAINQRQAAALTKAK 409
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+L +++++I ++LPLDFWTIDLR A +LG+I+GE+++E VL IF +FCIGK
Sbjct: 410 ISLEQVQATITDQLPLDFWTIDLRGAIQSLGEITGEEVTESVLDRIFSRFCIGK 463
>gi|172039509|ref|YP_001806010.1| tRNA modification GTPase TrmE [Cyanothece sp. ATCC 51142]
gi|354552227|ref|ZP_08971535.1| tRNA modification GTPase TrmE [Cyanothece sp. ATCC 51472]
gi|171700963|gb|ACB53944.1| tRNA modification GTPase [Cyanothece sp. ATCC 51142]
gi|353555549|gb|EHC24937.1| tRNA modification GTPase TrmE [Cyanothece sp. ATCC 51472]
Length = 460
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 235/474 (49%), Positives = 327/474 (68%), Gaps = 26/474 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+I G++GI+RLSG A++I +F K+K W SH + YG
Sbjct: 10 TIAAIATAIVPQQGSIGIIRLSGNKALNIAQTLFIAPGKQK--------WE--SHRILYG 59
Query: 154 VVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
+ RH V+DE L + MLAPRSYTREDV+E CHG + +++VL+ CLE GA LAQ
Sbjct: 60 YI--RHPQTEQVIDEALLLMMLAPRSYTREDVIEFHCHGGIMPVQQVLQLCLEQGAILAQ 117
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFTLRAFLNGR+DL+QAE++ +L+SA+S A+ ALAG+QG + + ++R C+++L
Sbjct: 118 PGEFTLRAFLNGRIDLTQAESIRELVSARSQQASQMALAGLQGKLAQPIQTLRHHCLDIL 177
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
EIEAR+DF++++PPL+ N + + ++ + E+ L TA +LL++GL++AIVGRPNVG
Sbjct: 178 AEIEARIDFEEDLPPLDENAISQGLKSILEQFESILNTAEQGELLRNGLKVAIVGRPNVG 237
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+P+ +LDTAGIR+T D VEKIGVER
Sbjct: 238 KSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRQTTDQVEKIGVER 297
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S A AD++++T+ A GWTS+DSE+ I+ P+ILVINKID A+
Sbjct: 298 SRLAASQADLVLLTIDATVGWTSQDSEIYQPIR--------HLPVILVINKIDL---ATP 346
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
++ + V T A QGI+ LE AI+K + ++ A +A+NQRQ L R K
Sbjct: 347 NLSQFPPEITEIVKTSAANHQGIEALEAAILKAINQQKLTANNLDFAINQRQSAALTRAK 406
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL +++ +I E+LPLDFWTIDLR A ALG+I+GE+I+E VL IF +FCIGK
Sbjct: 407 IALQQVQITIAEDLPLDFWTIDLRSAIQALGEITGEEITESVLDKIFSRFCIGK 460
>gi|443312589|ref|ZP_21042205.1| tRNA modification GTPase TrmE [Synechocystis sp. PCC 7509]
gi|442777308|gb|ELR87585.1| tRNA modification GTPase TrmE [Synechocystis sp. PCC 7509]
Length = 456
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 239/478 (50%), Positives = 321/478 (67%), Gaps = 27/478 (5%)
Query: 90 GTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
T TIAAI T++ G+VGIVRLSG A I ++F+ S G+ W SH
Sbjct: 3 ATNETIAAIATAVVPTQGSVGIVRLSGVTAYKIAQQIFQ--------SPGTQVWE--SHR 52
Query: 150 VEYGVVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGA 206
+ YG + RH ++DE L + ML+PRSYTREDV+E CHG + +++VL+ CLEAGA
Sbjct: 53 IVYGYI--RHPKTQQLIDEALLLIMLSPRSYTREDVIEFHCHGGIMAVQQVLQLCLEAGA 110
Query: 207 TLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKC 266
LAQPGEFTLRAFLNGRLDL+QAE++ L+ AKS AA AAL G++G S + +RA C
Sbjct: 111 RLAQPGEFTLRAFLNGRLDLTQAESINDLVGAKSPQAAQAALMGLEGFLRSPIIQLRATC 170
Query: 267 IELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+++L EIEAR+DF++++PPLN+ + KI + V LETAN +LL+SGL+IAIVGR
Sbjct: 171 LDILAEIEARIDFEEDLPPLNIEDITAKISQLLVKVGEILETANRGELLRSGLKIAIVGR 230
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLNAWSK +RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIRET D VEKI
Sbjct: 231 PNVGKSSLLNAWSKCDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDKVEKI 290
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS A GAD++++T+ A GWT ED+++ +Q P+ILVINKID
Sbjct: 291 GVERSLTSAQGADLVLLTIDAFAGWTEEDADIYTSVQHR--------PVILVINKIDLVE 342
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ ++ ++ V T A +GI+ LE AI+ V + + A+NQRQ L
Sbjct: 343 TKP----QLPDNITLTVETAAAQNKGIERLEQAILTTVQTGSVKSADMDLAINQRQAAAL 398
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
R K +L ++ ++ + LPLDFWTIDLR A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 399 TRAKISLQQVIEAVTDTLPLDFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 456
>gi|443324037|ref|ZP_21052993.1| tRNA modification GTPase TrmE [Xenococcus sp. PCC 7305]
gi|442796175|gb|ELS05489.1| tRNA modification GTPase TrmE [Xenococcus sp. PCC 7305]
Length = 458
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 225/472 (47%), Positives = 324/472 (68%), Gaps = 22/472 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI AI T+I G++G+VRLSG A+ I ++F + G W +H + YG
Sbjct: 8 TIVAIATAIVAQQGSIGVVRLSGEKAIAIAKQLFT--------APGKQIWE--THRILYG 57
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+ D + +VDE L + MLAPRSYT+ED+VE CHG + ++RVL+ C++ GA L+QPG
Sbjct: 58 YICDPQTKEIVDEALLLLMLAPRSYTKEDIVEFHCHGGIIPVQRVLQLCIQQGARLSQPG 117
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFTLRAFLNGR+DL+QAE+V +L+SA+S AA+ ALAG+QG + + +R C+++L E
Sbjct: 118 EFTLRAFLNGRIDLTQAESVAELVSAQSNAASQVALAGLQGKLAQPIRELRHHCLDILAE 177
Query: 273 IEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
+EAR+DF+D++PPL+++LV ++ + + V ++TA +LL++GL++AIVGRPNVGKS
Sbjct: 178 VEARIDFEDDLPPLDIDLVRQQLQEVLEQVTQIIDTAERGELLRTGLKVAIVGRPNVGKS 237
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNAWSKS+RAIVT++ GTTRDVIE+++ V G+P+ +LDTAGIRET D +EKIGVERS
Sbjct: 238 SLLNAWSKSDRAIVTDLPGTTRDVIESTLVVAGIPIQVLDTAGIRETADQIEKIGVERSR 297
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
A AD+++ T+ A GWT+ED+ + ++++ P+IL+INK D + N
Sbjct: 298 KAAESADLVLFTIDAQMGWTAEDTIIYSQVKHR--------PLILIINKTDL--TVENTI 347
Query: 453 NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEA 512
N + V T AV QGI LETAI+ V ++ A +A+NQRQ L + K +
Sbjct: 348 N-YPPEISQKVMTAAVINQGIDHLETAILDFVKTGKVAAANSDFAINQRQAATLTKAKVS 406
Query: 513 LVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L +++ +I LPLDFWTIDLR A ALG+++GE+++E VL IF +FCIGK
Sbjct: 407 LAQVQETISHNLPLDFWTIDLRGAVQALGEVTGEEVTESVLDRIFSRFCIGK 458
>gi|428203131|ref|YP_007081720.1| tRNA modification GTPase TrmE [Pleurocapsa sp. PCC 7327]
gi|427980563|gb|AFY78163.1| tRNA modification GTPase TrmE [Pleurocapsa sp. PCC 7327]
Length = 457
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 236/474 (49%), Positives = 324/474 (68%), Gaps = 26/474 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+I G++GIVRLSG A++I +F + G W SH + YG
Sbjct: 7 TIAAIATAIVPQQGSIGIVRLSGAKAIEIARTLFD--------APGKQPWE--SHRILYG 56
Query: 154 VVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
+ RH +VDE L + MLAPRSYT EDVVE CHG + +++VL+ CLE GA LAQ
Sbjct: 57 YI--RHPKTKQLVDEALLLIMLAPRSYTCEDVVEFHCHGGIIPVQQVLQLCLELGARLAQ 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFTLRAFLNGR+DL+QAE+V +L+ A+S A+ ALAG+QG + + +RA C+++L
Sbjct: 115 PGEFTLRAFLNGRIDLTQAESVAELVGAQSPQASQIALAGLQGKLAHPIRQLRATCLDIL 174
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
E+EAR+DF++++PPL+ N V + + + V++ L TA+ +LL++GL++AIVGRPNVG
Sbjct: 175 AEVEARIDFEEDLPPLDENEVRASLEVVLRQVKDILATADRGELLRTGLKVAIVGRPNVG 234
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIRET+D VEKIGVER
Sbjct: 235 KSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETEDTVEKIGVER 294
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S A AD+I++T+ A GWT +D E+ ++++ P+ILVINKID A + S
Sbjct: 295 SRHAAQVADLILLTIDAQAGWTDQDEEIYQQVKNR--------PLILVINKIDLATAEST 346
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
++ F V T A +GI+ LE AI++IV + A A+NQRQ L R K
Sbjct: 347 KYPSQIKHF---VKTAAAKNEGIESLEKAILEIVRAENLTAANLDLAINQRQSAALTRAK 403
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL +++ +I LPLDFWTIDLR A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 404 VALEQVQETINARLPLDFWTIDLRTAIQALGEITGEEVTESVLDRIFSRFCIGK 457
>gi|354567266|ref|ZP_08986436.1| tRNA modification GTPase mnmE [Fischerella sp. JSC-11]
gi|353543567|gb|EHC13025.1| tRNA modification GTPase mnmE [Fischerella sp. JSC-11]
Length = 460
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 231/478 (48%), Positives = 326/478 (68%), Gaps = 26/478 (5%)
Query: 90 GTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
T TIAAI T+I G+VGIVR+SG A+ P+ K + G W SH
Sbjct: 6 ATTGTIAAIATAIVPQQGSVGIVRVSGSEAI--------PIAKTLFHAPGRQVWE--SHR 55
Query: 150 VEYGVVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGA 206
+ YG + RH +VDE L + M APRSYTREDVVE CHG + +++VL+ CLE GA
Sbjct: 56 ILYGYI--RHPQTRQLVDEALLLIMQAPRSYTREDVVEFHCHGGIMAVQQVLQLCLENGA 113
Query: 207 TLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKC 266
LAQPGEFTLRAFLNGRLDL+QAE++ L+ A+S AA ALAG+QG + + +R +C
Sbjct: 114 RLAQPGEFTLRAFLNGRLDLTQAESIADLVGARSPQAAQTALAGLQGKLAQPIRQLRTQC 173
Query: 267 IELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+++L EIEAR+DF++++PPL+ ++ ++ +S ++ L TA +LL++GL++AIVGR
Sbjct: 174 LDILAEIEARIDFEEDLPPLDDKTIISEVEKISAEIAKLLATAEQGELLRTGLKVAIVGR 233
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIR T+D VEKI
Sbjct: 234 PNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRATEDQVEKI 293
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS + A AD++++T+ A GWT++D E+ +++ P+ILVINKID A
Sbjct: 294 GVERSRSAAQAADLVLLTIDASAGWTTDDQEIYAQVKHR--------PLILVINKIDLAA 345
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ + ++ + + V T V QGI LE AI++ V +I A A+NQRQ L
Sbjct: 346 AETVQYPR---EISQVVKTAVVQNQGIAALEAAILEQVQAGKIQAADMDLAINQRQAAAL 402
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++ K +L +++++I ++LPLDFWTIDLR A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 403 VKAKTSLEQVQTTIAQQLPLDFWTIDLRGAIHALGEITGEEVTESVLDRIFSRFCIGK 460
>gi|67922416|ref|ZP_00515927.1| tRNA modification GTPase TrmE:Small GTP-binding protein
domain:GTP-binding [Crocosphaera watsonii WH 8501]
gi|67855760|gb|EAM51008.1| tRNA modification GTPase TrmE:Small GTP-binding protein
domain:GTP-binding [Crocosphaera watsonii WH 8501]
Length = 460
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 231/474 (48%), Positives = 328/474 (69%), Gaps = 26/474 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+I G++GI+RLSG A+ I +F + G+ W+ SH + YG
Sbjct: 10 TIAAIATAIVPQQGSIGIIRLSGNKALSIAKTLFI--------APGNPKWQ--SHSILYG 59
Query: 154 VVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
+ RH V+DE L + MLAPRSYTREDV+E CHG + +++VL+ C+E GATLAQ
Sbjct: 60 YI--RHPQSQQVIDEALLLIMLAPRSYTREDVIEFHCHGGIMPVQQVLQLCIEQGATLAQ 117
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFTLRAFLNGR+DL+QAE++ +L+ A+S A+ ALAG+QG + + +R C+++L
Sbjct: 118 PGEFTLRAFLNGRIDLTQAESISELVGARSQQASQMALAGLQGKLAQPLQKLRHHCLDIL 177
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
EIEAR+DF++++PPL+ + + + + V+ L TA +LL++GL++AIVGRPNVG
Sbjct: 178 AEIEARIDFEEDLPPLDKKAISQGLETILEQVQTILNTAERGELLRNGLKVAIVGRPNVG 237
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNAWS+S+RAIVT++ GTTRDVIE+ + V G+P+ +LDTAGIR+T D VEKIGVER
Sbjct: 238 KSSLLNAWSRSDRAIVTDLPGTTRDVIESQLVVGGIPIQVLDTAGIRQTTDQVEKIGVER 297
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S+ A AD++++TV A W+++D+E+ I+ P+ILVINKID A+
Sbjct: 298 SQLAASQADLVLLTVDATVVWSNQDNEIYQAIEHR--------PVILVINKIDL---ATP 346
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+ + ++ V T A QGI+ LETAI+K + ++ A +A+NQRQ L R K
Sbjct: 347 DLAQFPTQISEIVKTSAANNQGIEALETAILKAIHQDKLTASNLDFAINQRQSAALTRAK 406
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+L +++++I+EELPLDFWTIDLR A ALG+I+GE+I+E VL IF +FCIGK
Sbjct: 407 ISLEQVQTTIKEELPLDFWTIDLRSAIQALGEITGEEITESVLDRIFSRFCIGK 460
>gi|416391866|ref|ZP_11685766.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Crocosphaera
watsonii WH 0003]
gi|357263780|gb|EHJ12747.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Crocosphaera
watsonii WH 0003]
Length = 460
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 231/474 (48%), Positives = 328/474 (69%), Gaps = 26/474 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+I G++GI+RLSG A+ I +F + G+ W+ SH + YG
Sbjct: 10 TIAAIATAIVPQQGSIGIIRLSGNKALSIAKTLFI--------APGNPKWQ--SHSILYG 59
Query: 154 VVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
+ RH V+DE L + MLAPRSYTREDV+E CHG + +++VL+ C+E GATLAQ
Sbjct: 60 YI--RHPQSQQVIDEALLLIMLAPRSYTREDVIEFHCHGGIMPVQQVLQLCIEQGATLAQ 117
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFTLRAFLNGR+DL+QAE++ +L+ A+S A+ ALAG+QG + + +R C+++L
Sbjct: 118 PGEFTLRAFLNGRIDLTQAESISELVGARSQQASQMALAGLQGKLAQPLQKLRHHCLDIL 177
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
EIEAR+DF++++PPL+ + + + + V+ L TA +LL++GL++AIVGRPNVG
Sbjct: 178 AEIEARIDFEEDLPPLDEKAISQGLETILEQVQTILNTAERGELLRNGLKVAIVGRPNVG 237
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNAWS+S+RAIVT++ GTTRDVIE+ + V G+P+ +LDTAGIR+T D VEKIGVER
Sbjct: 238 KSSLLNAWSRSDRAIVTDLPGTTRDVIESQLVVGGIPIQVLDTAGIRQTTDQVEKIGVER 297
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S+ A AD++++TV A W+++D+E+ I+ P+ILVINKID A+
Sbjct: 298 SQLAASQADLVLLTVDATVVWSNQDNEIYQAIEHR--------PVILVINKIDL---ATP 346
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+ + ++ V T A QGI+ LETAI+K + ++ A +A+NQRQ L R K
Sbjct: 347 DLAQFPTQISEIVKTSAANNQGIEALETAILKAIHQDKLTASNLDFAINQRQSAALTRAK 406
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+L +++++I+EELPLDFWTIDLR A ALG+I+GE+I+E VL IF +FCIGK
Sbjct: 407 ISLEQVQTTIKEELPLDFWTIDLRSAIQALGEITGEEITESVLDRIFSRFCIGK 460
>gi|119508848|ref|ZP_01628000.1| tRNA modification GTPase [Nodularia spumigena CCY9414]
gi|119466377|gb|EAW47262.1| tRNA modification GTPase [Nodularia spumigena CCY9414]
Length = 463
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 234/474 (49%), Positives = 321/474 (67%), Gaps = 23/474 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++ G+V IVR+SG A+ I +F + G W SH + YG
Sbjct: 10 TIAAIATAVIPQQGSVSIVRVSGSQAMAIAQALFS--------APGQQVWE--SHRILYG 59
Query: 154 VVLDRHGN---VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
+ RH +VDE L + M APRSYTREDVVE CHG + +++VL+ CLE GA LAQ
Sbjct: 60 HI--RHPQTQALVDEALLLIMQAPRSYTREDVVEFHCHGGIMAVQQVLQLCLEQGARLAQ 117
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFTLRAFLNGRLDL+QAE++ L+ A+S AA ALAG+QG +S + +RA C+++L
Sbjct: 118 PGEFTLRAFLNGRLDLTQAESIADLVGARSPQAAQTALAGLQGKLASPIRQLRANCLDIL 177
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
EIEAR+DF++++PPL+ ++ I ++ ++ L T + +LL++GL++AIVGRPNVG
Sbjct: 178 AEIEARIDFEEDLPPLDHKGIISDIDHVAAEISKFLATKDKGELLRTGLKVAIVGRPNVG 237
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIRET D VEKIGVER
Sbjct: 238 KSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETVDQVEKIGVER 297
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S A AD++++T+ A GWT D E+ +++Q P+ILVINKID +AS
Sbjct: 298 SRRAANAADLVLLTIDASAGWTESDQEIYDQVQHR--------PLILVINKIDLVETASI 349
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+ K ++ + V T A QGI LETAI+ IV ++ A A+NQRQ L + K
Sbjct: 350 DSGKYPHNIHQIVTTIAAKNQGIDALETAILNIVQTGKVQAADMDLAINQRQAAALTQAK 409
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+L +++ +I ++LPLDFWTIDLR A ALG+I+GE ++E VL IF +FCIGK
Sbjct: 410 ISLEQVQVTITDQLPLDFWTIDLRGAIQALGEITGEQVTESVLDRIFSRFCIGK 463
>gi|414075632|ref|YP_006994950.1| tRNA modification GTPase [Anabaena sp. 90]
gi|413969048|gb|AFW93137.1| tRNA modification GTPase [Anabaena sp. 90]
Length = 464
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 233/474 (49%), Positives = 321/474 (67%), Gaps = 22/474 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++ G+VGIVR+SG A+ I +F + G W +SH + YG
Sbjct: 10 TIAAIATAVVPQQGSVGIVRVSGDQAMAIAHTLFY--------APGRQVW--SSHRIIYG 59
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+ + +VDE L + M APRS+TREDVVE CHG + +++VL+ CLE GA LAQPG
Sbjct: 60 YIRQPQTKQIVDEALLLIMKAPRSFTREDVVEFHCHGGIMAVQQVLQLCLENGARLAQPG 119
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFTLRAFLNGRLDL+QAE++ L+ AKS AA ALAG+QG + + +RA C+++L E
Sbjct: 120 EFTLRAFLNGRLDLTQAESIADLVGAKSPQAAQTALAGLQGKLAQPIRKLRANCLDILAE 179
Query: 273 IEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
IEAR+DF++++PPL+ ++ I ++ ++ L T + +LL++GL++AIVGRPNVGKS
Sbjct: 180 IEARIDFEEDLPPLDQQRIIADIEQVTAEISKLLATKDKGELLRTGLKVAIVGRPNVGKS 239
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIRET D VEKIGVERS
Sbjct: 240 SLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETVDQVEKIGVERSH 299
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE- 451
A AD+++ T+ A GWTS D E+ +++ P+ILVINKID SA E
Sbjct: 300 RAANDADLVLFTIDAASGWTSADQEIYQQVKHR--------PVILVINKIDLISSAEQEN 351
Query: 452 -WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+K+ N + T A QGI +LETAI++IV ++ A A+NQRQ L + K
Sbjct: 352 LQSKIQNP-KSKILTAAAINQGIDNLETAILEIVQQGKVQAADLDLAINQRQAAALTKAK 410
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L +++ +I ++LPLDFWTIDLR A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 411 IDLAQVQMTITDKLPLDFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 464
>gi|126657505|ref|ZP_01728661.1| tRNA modification GTPase [Cyanothece sp. CCY0110]
gi|126621209|gb|EAZ91922.1| tRNA modification GTPase [Cyanothece sp. CCY0110]
Length = 460
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 233/474 (49%), Positives = 324/474 (68%), Gaps = 26/474 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+I G++GI+RLSG A++I +F K+K W SH + YG
Sbjct: 10 TIAAIATAIVPQQGSIGIIRLSGNNALNIAQTLFIAPGKQK--------WE--SHRILYG 59
Query: 154 VVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
+ RH V+DE L + MLAPRSYTREDV+E CHG + +++VL+ CLE GA LAQ
Sbjct: 60 YI--RHPQTEQVLDEALLLMMLAPRSYTREDVIEFHCHGGIMPVQQVLQLCLEQGAILAQ 117
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFTLRAFLNGR+DL+QAE++ +L+SA+S A+ ALAG+QG + + +R C+++L
Sbjct: 118 PGEFTLRAFLNGRIDLTQAESISELVSARSQQASQMALAGLQGKLAQPIQKLRHHCLDIL 177
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
EIEAR+DF+D++PPL+ + + + + VE+ L+TA +LL++GL++AIVGRPNVG
Sbjct: 178 AEIEARIDFEDDLPPLDKKAISQGLEEILEQVESILKTAEQGELLRNGLKVAIVGRPNVG 237
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+P+ +LDTAGIR+T D VEKIGVER
Sbjct: 238 KSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRQTTDQVEKIGVER 297
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S A AD++++T+ A GWT EDSE+ I+ P ILVINKID A+
Sbjct: 298 SRLAASQADLVLLTIDATVGWTVEDSEIYQPIR--------HLPTILVINKIDL---ATP 346
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+ ++ V T A QGI+ LE+ I++ + ++ A +A+NQRQ L R+K
Sbjct: 347 DLSQFPPEIKGIVKTSAANHQGIEALESTILQGINQQKLTANNLDFAINQRQAAALTRSK 406
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL +++ +I E+LPLDFWTIDLR A LG+I+GE+I+E VL IF +FCIGK
Sbjct: 407 IALQQVQITITEDLPLDFWTIDLRSAIQVLGEITGEEITESVLDKIFSRFCIGK 460
>gi|17232169|ref|NP_488717.1| tRNA modification GTPase TrmE [Nostoc sp. PCC 7120]
gi|21363007|sp|Q8YN91.1|MNME_NOSS1 RecName: Full=tRNA modification GTPase MnmE
gi|17133814|dbj|BAB76376.1| thiophen / furan oxidation protein [Nostoc sp. PCC 7120]
Length = 459
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 230/474 (48%), Positives = 319/474 (67%), Gaps = 23/474 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+I G+VGIVR+SG A+ I +F + G W SH + YG
Sbjct: 6 TIAAIATAIVPQQGSVGIVRVSGSQAIAIAQTLFD--------APGKQVWE--SHRILYG 55
Query: 154 VVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
+ RH +VDE L + M APRSYTREDVVE CHG + +++VL+ CLE+GA LAQ
Sbjct: 56 YI--RHPQTRQIVDEALLLLMKAPRSYTREDVVEFHCHGGIIAVQQVLQLCLESGARLAQ 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFTLRAFLNGRLDL+QAE++ L+ A+S AA ALAG+QG + + +RA C+++L
Sbjct: 114 PGEFTLRAFLNGRLDLTQAESIADLVGARSPQAAQTALAGLQGKLAHPIRQLRANCLDIL 173
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
EIEAR+DF++++PPL+ ++ I ++ ++ L T + +LL++GL++AIVGRPNVG
Sbjct: 174 AEIEARIDFEEDLPPLDDEAIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVG 233
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIRET D VEKIGVER
Sbjct: 234 KSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVER 293
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S A AD++++T+ A GWT+ D E+ +++ P+ILV+NKID
Sbjct: 294 SRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHR--------PLILVMNKIDLVEKQLI 345
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+ + V T A QGI LETAI++IV ++ A A+NQRQ L + K
Sbjct: 346 TSLEYPENITQIVHTAAAQKQGIDSLETAILEIVQTGKVQAADMDLAINQRQAAALTQAK 405
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+L +++++I ++LPLDFWTIDLR A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 406 MSLEQVQATITQQLPLDFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 459
>gi|262118592|pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 230/474 (48%), Positives = 319/474 (67%), Gaps = 23/474 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+I G+VGIVR+SG A+ I +F + G W SH + YG
Sbjct: 9 TIAAIATAIVPQQGSVGIVRVSGSQAIAIAQTLFD--------APGKQVWE--SHRILYG 58
Query: 154 VVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
+ RH +VDE L + M APRSYTREDVVE CHG + +++VL+ CLE+GA LAQ
Sbjct: 59 YI--RHPQTRQIVDEALLLLMKAPRSYTREDVVEFHCHGGIIAVQQVLQLCLESGARLAQ 116
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFTLRAFLNGRLDL+QAE++ L+ A+S AA ALAG+QG + + +RA C+++L
Sbjct: 117 PGEFTLRAFLNGRLDLTQAESIADLVGARSPQAAQTALAGLQGKLAHPIRQLRANCLDIL 176
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
EIEAR+DF++++PPL+ ++ I ++ ++ L T + +LL++GL++AIVGRPNVG
Sbjct: 177 AEIEARIDFEEDLPPLDDEAIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVG 236
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIRET D VEKIGVER
Sbjct: 237 KSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVER 296
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S A AD++++T+ A GWT+ D E+ +++ P+ILV+NKID
Sbjct: 297 SRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHR--------PLILVMNKIDLVEKQLI 348
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+ + V T A QGI LETAI++IV ++ A A+NQRQ L + K
Sbjct: 349 TSLEYPENITQIVHTAAAQKQGIDSLETAILEIVQTGKVQAADMDLAINQRQAAALTQAK 408
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+L +++++I ++LPLDFWTIDLR A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 409 MSLEQVQATITQQLPLDFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 462
>gi|427718480|ref|YP_007066474.1| tRNA modification GTPase trmE [Calothrix sp. PCC 7507]
gi|427350916|gb|AFY33640.1| tRNA modification GTPase trmE [Calothrix sp. PCC 7507]
Length = 464
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 233/484 (48%), Positives = 324/484 (66%), Gaps = 28/484 (5%)
Query: 87 EKAGTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT 146
E T TIAAI T++ G+VGIVR+SG A+ I +F + G W +
Sbjct: 3 EIFATTGTIAAIATAVVPQQGSVGIVRVSGSQAIAIAQTLFH--------APGRQVW--S 52
Query: 147 SHVVEYGVVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLE 203
SH + YG + RH +VDE L + M APRSYTREDVVE CHG + +++VL+ CLE
Sbjct: 53 SHRILYGYI--RHPQTQQLVDEALLLIMQAPRSYTREDVVEFHCHGGIIAVQQVLQLCLE 110
Query: 204 AGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVR 263
GA LAQPGEFTLRAFLNGRLDL+QAE++ L+ A+S AA AL G+QG + + +R
Sbjct: 111 NGARLAQPGEFTLRAFLNGRLDLTQAESIADLVGARSPQAAQIALIGLQGKLAHPIRQLR 170
Query: 264 AKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
A C+++L EIEAR+DF++++PPL+ ++ +I ++ ++ + T + +LL++GL++AI
Sbjct: 171 ANCLDILAEIEARIDFEEDLPPLDYEAIISEIENITTEITRLIATKDKGELLRTGLKVAI 230
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383
VGRPNVGKSSLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIRET D V
Sbjct: 231 VGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETLDQV 290
Query: 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443
EKIGVERS A AD++++T+ A GWT+ D E+ ++Q P+ILVINKID
Sbjct: 291 EKIGVERSRRAASAADLVLLTIDASAGWTAGDQEIYTQVQHR--------PVILVINKID 342
Query: 444 CAPSASNEWNKVGN---SFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQ 500
+E N + + + + T A QGI LETAI++IV +I A A+NQ
Sbjct: 343 LVQ--EDERNTLQSQIPNLKSKICTAAAKSQGIDALETAILEIVKTEKIQAADMDLAINQ 400
Query: 501 RQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKF 560
RQ L++ K +L +++++I E+LPLDFWTIDLRDA G+I+GE+ +E VL IF +F
Sbjct: 401 RQAAALIKAKISLEQVQATITEQLPLDFWTIDLRDAIHTFGEITGEEATESVLDRIFSRF 460
Query: 561 CIGK 564
CIGK
Sbjct: 461 CIGK 464
>gi|218248879|ref|YP_002374250.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 8801]
gi|218169357|gb|ACK68094.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 8801]
Length = 460
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 234/474 (49%), Positives = 320/474 (67%), Gaps = 26/474 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+I G++GIVRLSG AV I ++F + G W SH + YG
Sbjct: 10 TIAAIATAIVPQQGSIGIVRLSGNQAVTIARQLFT--------APGQQKWE--SHRILYG 59
Query: 154 VVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
+ RH V+DE L + MLAPRSYTREDVVE CHG + +++VL+ C+E GA LAQ
Sbjct: 60 YI--RHPQTQQVIDEALLLLMLAPRSYTREDVVEFHCHGGIIPVQQVLQLCVEQGAKLAQ 117
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFTLRAFLNGR+DL+QAE+V +L+ A+S A+ ALAG+QG + + +R +C+++L
Sbjct: 118 PGEFTLRAFLNGRIDLTQAESVAQLVGARSPQASQMALAGLQGKLAQPIRQLRDRCLDIL 177
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
E+EAR+DF++++PPL+ N +++ + + V+ L TA+ +LL++GL++AIVGRPNVG
Sbjct: 178 AEVEARIDFEEDLPPLDENSIIEGLQDILTHVQALLATADRGELLRTGLKVAIVGRPNVG 237
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+P+ +LDTAGIRET D VEK+GVER
Sbjct: 238 KSSLLNAWSRSDRAIVTDLPGTTRDVVESQLIVGGIPIQVLDTAGIRETADRVEKLGVER 297
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S VA AD++++T+ A GWT+ED + ++Q P+ILVINKID + S
Sbjct: 298 SRHVASQADLVLLTIDAQMGWTTEDEAIYQQVQHR--------PLILVINKIDLGLADSL 349
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+ V T A QGI+ LE AI+ V I A A+NQRQ L R K
Sbjct: 350 SFIP---QIKQIVKTVAAQNQGIEQLEKAILASVESQNIQAANLDLAINQRQAAVLTRAK 406
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL +++ +I +LPLDFWTIDLR A ALG+I+GE+I+E VL IF +FCIGK
Sbjct: 407 IALEKVQETIVNQLPLDFWTIDLRAAIQALGEITGEEITESVLDRIFSRFCIGK 460
>gi|75908210|ref|YP_322506.1| tRNA modification GTPase TrmE [Anabaena variabilis ATCC 29413]
gi|123758831|sp|Q3MBM5.1|MNME_ANAVT RecName: Full=tRNA modification GTPase MnmE
gi|75701935|gb|ABA21611.1| tRNA modification GTPase trmE [Anabaena variabilis ATCC 29413]
Length = 463
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 233/477 (48%), Positives = 321/477 (67%), Gaps = 29/477 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+I G+VGIVR+SG A+ I +F + G W SH + YG
Sbjct: 10 TIAAIATAIVPQQGSVGIVRVSGSQAIAIAQTLFH--------APGKQVWE--SHRILYG 59
Query: 154 VVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
+ RH +VDE L + M APRSYTREDVVE CHG + +++VL+ CLE GA LAQ
Sbjct: 60 YI--RHPQTRQIVDEALLLLMKAPRSYTREDVVEFHCHGGIMAVQQVLQLCLEGGARLAQ 117
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFTLRAFLNGRLDL+QAE++ L+ A+S AA ALAG+QG + + +RA C+++L
Sbjct: 118 PGEFTLRAFLNGRLDLTQAESIADLVGARSPQAAQTALAGLQGKLAHPIRQLRANCLDIL 177
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
EIEAR+DF++++PPL+ ++ I ++ ++ L T + +LL++GL++AIVGRPNVG
Sbjct: 178 AEIEARIDFEEDLPPLDDEKIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVG 237
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIRET D VEKIGVER
Sbjct: 238 KSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVER 297
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS--- 447
S A AD++++T+ A GWT+ D E+ +++ P+ILV+NKID
Sbjct: 298 SRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHR--------PLILVMNKIDLVDKKLI 349
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
S E+ K + V T A QGI LETAI++IV ++ A A+NQRQ L
Sbjct: 350 TSLEYPK---NITQIVHTAAAQKQGIDALETAILEIVQTGKVKAADMDLAINQRQAAALT 406
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K +L +++++I ++LPLDFWTIDLR A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 407 QAKISLEQVQATITQQLPLDFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 463
>gi|332705667|ref|ZP_08425743.1| tRNA modification GTPase trmE [Moorea producens 3L]
gi|332355459|gb|EGJ34923.1| tRNA modification GTPase trmE [Moorea producens 3L]
Length = 459
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 230/475 (48%), Positives = 318/475 (66%), Gaps = 23/475 (4%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
TIAAI T++ G++GIVRLSG A+ I +F+ + G +W SH + Y
Sbjct: 5 QTIAAIATAVVPQQGSIGIVRLSGRDAIAIARTLFQ--------APGRQAWE--SHRILY 54
Query: 153 GVVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
G V RH +VDE L + M APRSYTREDVVE CHG + +++VL+ CLE GA LA
Sbjct: 55 GYV--RHPKTQQLVDEALLLIMQAPRSYTREDVVEFHCHGGIMPVQKVLQLCLEQGARLA 112
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
QPGEFTLRAFLNGRLDL+QAE+V L+ ++S AA AALAG+QG ++ + RA C+++
Sbjct: 113 QPGEFTLRAFLNGRLDLTQAESVADLVGSRSPAAVQAALAGLQGKLATPIREARATCLDI 172
Query: 270 LTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
L EIEAR+DF++++PPL+ ++ +++ + +V L TA+ +LL++GL++ I+GRPNV
Sbjct: 173 LAEIEARIDFEEDLPPLDQGAIVAQLNNILTEVSQLLATADQGELLRTGLKVVILGRPNV 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNAWS+ +RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIRET D VEKIGVE
Sbjct: 233 GKSSLLNAWSRCDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETADQVEKIGVE 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS + A+ AD++++ + A GW++ D E+ ++Q P+ILVINK D A +
Sbjct: 293 RSRSAAMAADLVLLVIEATTGWSAGDQEIYQQVQER--------PVILVINKTDLASDKA 344
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
N+ V T A QGI LE AI+ V + A A+NQRQ L R
Sbjct: 345 ESTLSYPNTIERVVKTAAAYNQGIDALEKAILDAVNRGNLQAADLDLAINQRQAAALTRA 404
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K +L +++ +I +ELPLDFWTIDLR A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 405 KMSLQQVQETIAKELPLDFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 459
>gi|427727794|ref|YP_007074031.1| tRNA modification GTPase TrmE [Nostoc sp. PCC 7524]
gi|427363713|gb|AFY46434.1| tRNA modification GTPase TrmE [Nostoc sp. PCC 7524]
Length = 463
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 230/475 (48%), Positives = 318/475 (66%), Gaps = 19/475 (4%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
T TIAAI T++ G+VGIVR+SG A+ I +F + G W SH +
Sbjct: 7 TTGTIAAIATAVVPQQGSVGIVRVSGCHAMGIAQTLFD--------APGKQVWE--SHRI 56
Query: 151 EYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG + + +VDE L + M APRSYTREDVVE CHG + +++VL+ CLE GA LA
Sbjct: 57 LYGYIHHPQTRQLVDEALLLIMKAPRSYTREDVVEFHCHGGIMAVQQVLQLCLEHGARLA 116
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
QPGEFTLRAFLNGRLDL+QAE++ L+ AKS AA ALAG+QG + + +RA C+++
Sbjct: 117 QPGEFTLRAFLNGRLDLTQAESIADLVGAKSPQAAQTALAGLQGKLAHPIRQLRANCLDI 176
Query: 270 LTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
L EIEAR+DF++++PPL+ ++ I +++ ++ L T + +LL++GL++AIVGRPNV
Sbjct: 177 LAEIEARIDFEEDLPPLDDKQIISDIDSIAGEISKLLATKDKGELLRTGLKVAIVGRPNV 236
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIR+T D VEKIGVE
Sbjct: 237 GKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRDTTDQVEKIGVE 296
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS A AD+++ T+ A GWT D ++ ++Q P+ILVINKID
Sbjct: 297 RSRHAANTADLVLFTIDAATGWTDGDRQIYEQVQHR--------PLILVINKIDLVEKQR 348
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+ + + V T A QGI LETAI++IV ++ A A+NQRQ L +
Sbjct: 349 IHALEYPHHISHIVHTAAAQNQGIDALETAILEIVQAGKVQAADMDLAINQRQAAALTQA 408
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K +L +++++I ++LPLDFWTIDLR A ALG+I+GE++SE VL IF +FCIGK
Sbjct: 409 KVSLAQVQATIAQQLPLDFWTIDLRGAIQALGEITGEEVSESVLDKIFSRFCIGK 463
>gi|186684424|ref|YP_001867620.1| tRNA modification GTPase TrmE [Nostoc punctiforme PCC 73102]
gi|186466876|gb|ACC82677.1| tRNA modification GTPase TrmE [Nostoc punctiforme PCC 73102]
Length = 464
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 235/483 (48%), Positives = 320/483 (66%), Gaps = 26/483 (5%)
Query: 87 EKAGTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT 146
E T TIAAI T++ G+VGIVR+SG A+ + +F + G W
Sbjct: 3 EVFATTGTIAAIATAVVPQQGSVGIVRVSGSEAMALAQTLFH--------APGRQVWE-- 52
Query: 147 SHVVEYGVVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLE 203
SH + YG + RH +VDE L + M APRSYTREDVVE CHG + +++VL+ CLE
Sbjct: 53 SHQILYGYI--RHPQTQQLVDEALLLIMKAPRSYTREDVVEFHCHGGIMAVQQVLQLCLE 110
Query: 204 AGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVR 263
GA LAQPGEFTLRAFLNGRLDL+QAE + L+ AKS AA ALAG+QG + + +R
Sbjct: 111 NGARLAQPGEFTLRAFLNGRLDLTQAEGIADLVGAKSPQAAQTALAGLQGKLAHSIRQLR 170
Query: 264 AKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
A C+++L EIEAR+DF++++PPL+ ++ +I ++ ++ L T + +LL++GL++AI
Sbjct: 171 ANCLDILAEIEARIDFEEDLPPLDDKAIISEIEKIAAEITRLLATKDKGELLRTGLKVAI 230
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383
VGRPNVGKSSLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIRET D V
Sbjct: 231 VGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETTDQV 290
Query: 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443
EKIGVERS A AD++++T+ A GWT D E+ ++Q P+ILVINKID
Sbjct: 291 EKIGVERSRRAANAADLVLLTIDASAGWTEGDREIYEQVQHR--------PLILVINKID 342
Query: 444 CAPSASNE--WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQR 501
+ +++ N N + T A QGI LE AI++IV +I A A+NQR
Sbjct: 343 LVEERQRKTLQSQIPNP-NSKIATAAAQNQGIDALEVAILEIVKAEKIQAADMDLAINQR 401
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
Q L + K +L +++++I + LPLDFWTIDLR A ALG I+GE+++E VL IF KFC
Sbjct: 402 QAAALTQAKISLEQVQTTIVQHLPLDFWTIDLRGAIQALGAITGEEVTESVLDRIFSKFC 461
Query: 562 IGK 564
IGK
Sbjct: 462 IGK 464
>gi|359462302|ref|ZP_09250865.1| tRNA modification GTPase TrmE [Acaryochloris sp. CCMEE 5410]
Length = 455
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 229/459 (49%), Positives = 307/459 (66%), Gaps = 22/459 (4%)
Query: 107 GAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLD-RHGNVVDE 165
G++GIVRLSG AV I ++F + G+ W SH V YG + V+DE
Sbjct: 18 GSIGIVRLSGADAVSIAKQLFH--------TPGNQLWE--SHRVLYGYIQQPSTQQVIDE 67
Query: 166 VLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLD 225
L + MLAPRSYTREDVVE CHG + +++VL ACL+AGA LAQPGEFTLRAFLNGRLD
Sbjct: 68 ALLLLMLAPRSYTREDVVEFHCHGGMIPVQQVLEACLQAGAELAQPGEFTLRAFLNGRLD 127
Query: 226 LSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPP 285
L+QAE V L+ A+S AA AALAG+QG +S + +R +C++ L E+EAR+DF+D++PP
Sbjct: 128 LTQAEGVADLVGARSPQAAQAALAGVQGKLASPIRVLRQRCLDTLAEVEARVDFEDDLPP 187
Query: 286 LNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAI 345
L+ V ++ + ++ L TA+ +LL++GL++AIVGRPNVGKSSLLNAW + +RAI
Sbjct: 188 LDEVSVQAELQEIHTTLQAILATADQGELLRNGLKVAIVGRPNVGKSSLLNAWCRCDRAI 247
Query: 346 VTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTV 405
VT++ GTTRDV+E+ + V G+P+ +LDTAGIRET D VE+IGV RS A AD++++T+
Sbjct: 248 VTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRETKDQVEQIGVTRSHRAAQSADLVLLTI 307
Query: 406 SAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFT 465
A GWTSED +L Q PMIL++NK+D P E + V T
Sbjct: 308 DASAGWTSEDQQLYQVFQ--------GLPMILIVNKVDLVP---QEQVIYPETIAQVVST 356
Query: 466 CAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELP 525
A QGI +LETAI++ V + A WA+NQRQ L + + AL ++ +I ++LP
Sbjct: 357 IAAQNQGISELETAILETVQTRSLQAANLDWAINQRQAAALQKAQTALEHVQVAIADQLP 416
Query: 526 LDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
LDFWTIDLR A ALG+I+GEDI+E VL IF +FCIGK
Sbjct: 417 LDFWTIDLRGAIQALGEITGEDITESVLDRIFSRFCIGK 455
>gi|434397266|ref|YP_007131270.1| tRNA modification GTPase trmE [Stanieria cyanosphaera PCC 7437]
gi|428268363|gb|AFZ34304.1| tRNA modification GTPase trmE [Stanieria cyanosphaera PCC 7437]
Length = 458
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 233/477 (48%), Positives = 323/477 (67%), Gaps = 26/477 (5%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
T TI AI T++ G++GIVRLSG AV+I +F + G W SH +
Sbjct: 5 TGKTIVAIATAVVPQQGSIGIVRLSGEEAVNIARNLFD--------APGKQLWE--SHRL 54
Query: 151 EYGVVLDRHGN---VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
YG + RH + +VDE L + MLAPRS+TREDVVE CHG + ++ VL+ CLE GA
Sbjct: 55 LYGYI--RHPDTKELVDEALLLLMLAPRSFTREDVVEFHCHGGIIPVQEVLKLCLEQGAR 112
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
LAQPGEFTLRAFLNGR+DL+QAE++ +L+ A+S AA+ ALAG+QG + + +RA C+
Sbjct: 113 LAQPGEFTLRAFLNGRIDLTQAESIAELVGAQSQAASVVALAGLQGKLAHPIRQLRATCL 172
Query: 268 ELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
++L E+EAR+DF++++PPLN +L+ ++ + Q V++ L TAN +LL++G+++AIVGRP
Sbjct: 173 DILAEVEARIDFEEDLPPLNEDLIRQQLKDVLQQVKDILATANQGELLRNGIKVAIVGRP 232
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLNAWSK +RAIVT++ GTTRDVIE+S+ G+P+ +LDTAGIR+T D VEKIG
Sbjct: 233 NVGKSSLLNAWSKCDRAIVTDLPGTTRDVIESSLVAGGIPIQVLDTAGIRDTFDTVEKIG 292
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS+ A AD++++TV A GWT ED ++ +++ P+ILVINK+D
Sbjct: 293 VERSQKAAQSADLVLLTVDAEAGWTEEDQKIYLQVKHR--------PLILVINKVDL--- 341
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
AS E V T A +GI LETAI+ V + A A+NQRQ L
Sbjct: 342 ASPETIIYPQEIQQIVTTSAANQEGIDLLETAILASVQTGETTAANLELAINQRQAAALT 401
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K++L +++ +I+ LPLDFWTIDLR A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 402 QAKQSLEQVQETIKANLPLDFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 458
>gi|428780635|ref|YP_007172421.1| tRNA modification GTPase TrmE [Dactylococcopsis salina PCC 8305]
gi|428694914|gb|AFZ51064.1| tRNA modification GTPase TrmE [Dactylococcopsis salina PCC 8305]
Length = 455
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 231/473 (48%), Positives = 316/473 (66%), Gaps = 24/473 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI AI T + G+VGIVRLSG A+ I +F + G W SH + YG
Sbjct: 5 TIVAIATPVVPQQGSVGIVRLSGEKALSIAKSLFH--------APGKQVWE--SHRILYG 54
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
V G VDE L + M +PRSYT+EDVVE CHG + +++VL CLE GA LAQ G
Sbjct: 55 YVSHPETGKTVDEALLLIMQSPRSYTKEDVVEFHCHGGMIPVQQVLNLCLEQGARLAQQG 114
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFTLRAFLNGR+DL+QAE++ +L+ AKS A + ALAG+QG + + +R+ C+++L E
Sbjct: 115 EFTLRAFLNGRIDLTQAESIAELVGAKSPQAGEMALAGLQGKLAQPIRELRSTCLDILAE 174
Query: 273 IEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
+EAR+DF DE+PPL+ + ++ A+ VE+ L TA+ +LL++G+++AIVGRPNVGKS
Sbjct: 175 VEARVDFADELPPLDNTEIQQQVKAVLSRVEDFLNTADQGELLRTGIKVAIVGRPNVGKS 234
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNAWS+++RAIVTE+ GTTRDV+E+++ V G+PV +LDTAGIRET+D VEKIGV RS
Sbjct: 235 SLLNAWSRTDRAIVTELPGTTRDVVESNLVVGGIPVEVLDTAGIRETEDQVEKIGVARSR 294
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDC-APSASNE 451
A AD+I+ T+ A GWT ED + ++++ P+ILVINK D +P N
Sbjct: 295 QAAEKADLILHTIDAQLGWTEEDDLIYEQVKAR--------PLILVINKTDLKSPQTVNY 346
Query: 452 WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKE 511
+ + N+ V T A QGI DLE+AI+ +V + A R +A+NQRQ L R K
Sbjct: 347 PDTIQNT----VATAAAQSQGITDLESAILSLVQKGNVNAANRDFAINQRQAATLTRAKT 402
Query: 512 ALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL + +IE++LPLDFWTIDLR A A G+I+GE+++E +L IF +FCIGK
Sbjct: 403 ALQHVLETIEQQLPLDFWTIDLRSAIQAFGEITGEEVTESMLDRIFSRFCIGK 455
>gi|298490946|ref|YP_003721123.1| tRNA modification GTPase TrmE ['Nostoc azollae' 0708]
gi|298232864|gb|ADI64000.1| tRNA modification GTPase TrmE ['Nostoc azollae' 0708]
Length = 464
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 230/474 (48%), Positives = 321/474 (67%), Gaps = 22/474 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++ G+VGIVR+SG A+ I +F +++ W SH + YG
Sbjct: 10 TIAAIATAVVPQQGSVGIVRVSGDKAIAIAQTLFSAPRRQ--------VWE--SHRILYG 59
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+ + +VDE L + M APRS+TREDVVE CHG + +++VL+ CLE GA LAQPG
Sbjct: 60 YIRQPQTRQLVDEALLLIMKAPRSFTREDVVEFHCHGGIIAVQQVLQLCLENGARLAQPG 119
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFTLRAFLNGRLDL+QAE+V L+ AKS AA ALAG+QG + + +RA+C+++L E
Sbjct: 120 EFTLRAFLNGRLDLTQAESVADLVGAKSPQAAQTALAGLQGKLAHPIRQLRAQCLDILAE 179
Query: 273 IEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
IEAR+DF++++PPL+ ++ +I ++ ++ L T + +LL++GL++AIVGRPNVGKS
Sbjct: 180 IEARIDFEEDLPPLDEQRIISEIDQVTLEITKFLATKDQGELLRTGLKVAIVGRPNVGKS 239
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIRET D VEKIGVERS
Sbjct: 240 SLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETADQVEKIGVERSR 299
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE- 451
+ AD+++ T+ A GWT D E+ +++ P+ILVINKID A +
Sbjct: 300 RASSAADLVLFTIDASAGWTQADQEIYEQVKHR--------PVILVINKIDLISIAEKQT 351
Query: 452 -WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+K+ S + T A QGI LETA+++IV ++ A A+NQRQ L + K
Sbjct: 352 LQSKI-QSPKSKIVTAAAQNQGIDSLETAVLEIVKAGKVQAADIDLAINQRQAAALTKAK 410
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+L +++ +I E+LPLDFWTIDLR A ALG+I+GE+++E VL IF KFCIGK
Sbjct: 411 ISLEQVQVTIIEQLPLDFWTIDLRGAIYALGEITGEEVTESVLDRIFSKFCIGK 464
>gi|257061940|ref|YP_003139828.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 8802]
gi|256592106|gb|ACV02993.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 8802]
Length = 460
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 234/474 (49%), Positives = 319/474 (67%), Gaps = 26/474 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+I G++GIVRLSG AV I ++F + G W SH + YG
Sbjct: 10 TIAAIATAIVPQQGSIGIVRLSGNQAVTIARQLFT--------APGQQKWE--SHRILYG 59
Query: 154 VVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
+ RH V+DE L + MLAPRSYTREDVVE CHG + +++VL+ C+E GA LAQ
Sbjct: 60 YI--RHPQTQQVIDEALLLLMLAPRSYTREDVVEFHCHGGIIPVQQVLQLCVEQGAKLAQ 117
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFTLRAFLNGR+DL+QAE+V +L+ A+S A+ ALAG+QG + + +R +C+++L
Sbjct: 118 PGEFTLRAFLNGRIDLTQAESVAQLVGARSPQASQMALAGLQGKLAQPIRQLRDRCLDIL 177
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
E+EAR+DF++++PPL+ N +++ + + V+ L TA+ +LL++GL++AIVGRPNVG
Sbjct: 178 AEVEARIDFEEDLPPLDENSIIEGLQDILTHVQALLATADRGELLRTGLKVAIVGRPNVG 237
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNAWS S+RAIVT++ GTTRDV+E+ + V G+P+ +LDTAGIRET D VEK+GVER
Sbjct: 238 KSSLLNAWSCSDRAIVTDLPGTTRDVVESQLIVGGIPIQVLDTAGIRETADRVEKLGVER 297
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S VA AD++++T+ A GWT+ED + ++Q P+ILVINKID + S
Sbjct: 298 SRHVASQADLVLLTIDAQMGWTTEDEAIYQQVQHR--------PLILVINKIDLGLADSL 349
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+ V T A QGI+ LE AI+ V I A A+NQRQ L R K
Sbjct: 350 SFIP---QIKQIVKTVAAQNQGIEQLEKAILASVESQNIQAANLDLAINQRQAAVLTRAK 406
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL +++ +I +LPLDFWTIDLR A ALG+I+GE+I+E VL IF +FCIGK
Sbjct: 407 IALEQVQETIVNQLPLDFWTIDLRAAIQALGEITGEEITESVLDRIFSRFCIGK 460
>gi|440680183|ref|YP_007154978.1| tRNA modification GTPase trmE [Anabaena cylindrica PCC 7122]
gi|428677302|gb|AFZ56068.1| tRNA modification GTPase trmE [Anabaena cylindrica PCC 7122]
Length = 464
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 230/474 (48%), Positives = 319/474 (67%), Gaps = 22/474 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++ G+VGIVR+SG A+ I +F + G W +SH + YG
Sbjct: 10 TIAAIATAVVPQQGSVGIVRVSGDHAIAIAQTLFS--------APGRQVW--SSHRILYG 59
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+ + VVDE L + M APRS+TREDVVE CHG + +++VL+ CLE GA LAQPG
Sbjct: 60 YIRQPQTKQVVDEALLLIMKAPRSFTREDVVEFHCHGGIMAVQQVLQLCLENGARLAQPG 119
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFTLRAFLNGRLDL+QAE++ L+ AKS AA ALAG+QG + + +RA+C+++L E
Sbjct: 120 EFTLRAFLNGRLDLTQAESIADLVGAKSPQAAQTALAGLQGKLAHPIRQLRAQCLDILAE 179
Query: 273 IEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
IEAR+DF++++PPL+ ++ +I ++ ++ L T + +LL++GL++AIVGRPNVGKS
Sbjct: 180 IEARIDFEEDLPPLDEQRIIAEIDQVTAEITKLLATKDKGELLRTGLKVAIVGRPNVGKS 239
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+P+ +LDTAGIRET D VEKIGVERS
Sbjct: 240 SLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRETADQVEKIGVERSR 299
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE- 451
A AD+++ T+ A GWT D E+ +++ P+ILVINKID +
Sbjct: 300 RAANNADLVLFTIDAFAGWTDADQEIYEQVKHR--------PVILVINKIDLISVEQKQT 351
Query: 452 -WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+K+ N + T A QGI LETAI++IV ++ A A+NQRQ L + K
Sbjct: 352 LQSKIQNP-KSKIVTAAAQNQGIDGLETAILEIVQAGKVQAADMDLAINQRQAAALTKAK 410
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L +++ +I E+LPLDFWTIDLR A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 411 IDLEQVQKTIIEQLPLDFWTIDLRGAIYALGEITGEEVTESVLDRIFSRFCIGK 464
>gi|427709600|ref|YP_007051977.1| tRNA modification GTPase trmE [Nostoc sp. PCC 7107]
gi|427362105|gb|AFY44827.1| tRNA modification GTPase trmE [Nostoc sp. PCC 7107]
Length = 464
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/463 (48%), Positives = 315/463 (68%), Gaps = 26/463 (5%)
Query: 107 GAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRH---GNVV 163
G+V IVR+SG A+ I +F + G +W SH + YG + RH ++
Sbjct: 23 GSVSIVRMSGSQAMAIAQTLFH--------APGKQAWE--SHRILYGYI--RHPQTQQLI 70
Query: 164 DEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGR 223
DE L + M APRSYTREDVVE CHG + +++VL+ CLE GA LAQPGEFTLRAFLNGR
Sbjct: 71 DEALLLIMQAPRSYTREDVVEFHCHGGIIAVQQVLQLCLENGARLAQPGEFTLRAFLNGR 130
Query: 224 LDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEM 283
LDL+QAE++ L+ AKS AA ALAG+QG + + +RA C+++L EIEAR+DF++++
Sbjct: 131 LDLTQAESIADLVGAKSPQAAQTALAGLQGKLAHPIRQLRANCLDILAEIEARIDFEEDL 190
Query: 284 PPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSER 343
PPL+ ++ +I ++ ++ + L T + +LL++GL++AIVGRPNVGKSSLLNAWS+S+R
Sbjct: 191 PPLDDRSIISEIDKITAEITHLLATKDQGELLRTGLKVAIVGRPNVGKSSLLNAWSRSDR 250
Query: 344 AIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIM 403
AIVT++ GTTRDV+E+ + V G+PV +LDTAGIRET D VEKIGVERS A AD+++
Sbjct: 251 AIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETADQVEKIGVERSRRAANAADLVLF 310
Query: 404 TVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE--WNKVGNSFND 461
T+ A GWT D E+ ++Q P+ILVINK+D +++ +K+ N
Sbjct: 311 TIDAGAGWTEGDQEIYTQVQHR--------PLILVINKVDLVDETTSKDLQSKIQNP-KS 361
Query: 462 HVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIE 521
+ T A QGI DLETAI+ V L +I A A+NQRQ L + K +L +++++I
Sbjct: 362 KILTAASQNQGINDLETAILAKVKLEKIQAADMDLAINQRQAAALTQAKISLEQVQATIS 421
Query: 522 EELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++LPLDFWTIDLR A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 422 QQLPLDFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 464
>gi|209524294|ref|ZP_03272844.1| tRNA modification GTPase TrmE [Arthrospira maxima CS-328]
gi|376003488|ref|ZP_09781298.1| tRNA modification GTPase TrmE [Arthrospira sp. PCC 8005]
gi|423066798|ref|ZP_17055588.1| tRNA modification GTPase [Arthrospira platensis C1]
gi|209495385|gb|EDZ95690.1| tRNA modification GTPase TrmE [Arthrospira maxima CS-328]
gi|375328145|emb|CCE17051.1| tRNA modification GTPase TrmE [Arthrospira sp. PCC 8005]
gi|406711823|gb|EKD07022.1| tRNA modification GTPase [Arthrospira platensis C1]
Length = 469
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/478 (47%), Positives = 329/478 (68%), Gaps = 25/478 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+I G++GIVR+SG AV I +FK + G+ W +SH + YG
Sbjct: 10 TIAAIATAIVPQQGSIGIVRMSGSEAVAIAKTLFK--------APGNQPW--SSHRILYG 59
Query: 154 VVLDRH-GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+ H +VDE L + MLAPRSYTREDVVE CHG + +++VL+ CL+AGA LA PG
Sbjct: 60 YIHHPHTQQLVDEALLLLMLAPRSYTREDVVEFHCHGGIIPVQQVLQLCLQAGARLATPG 119
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFTLRAFLNGRLDL+QAE+V +L+ AKS AA AALAG++G ++ + +R+ C+++L E
Sbjct: 120 EFTLRAFLNGRLDLTQAESVAELVGAKSPQAASAALAGLRGKLAAPIHHLRSLCLDILAE 179
Query: 273 IEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
IEAR+DF++++PPLN + ++ ++ + Q + + L+TA+ +LL++GL++AIVGRPNVGKS
Sbjct: 180 IEARVDFEEDLPPLNESEIIHQLQEVLQQLTDILDTADRGELLRTGLKVAIVGRPNVGKS 239
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+P+ +LDTAGIR++DD VE+IGVERS+
Sbjct: 240 SLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRKSDDKVEQIGVERSQ 299
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS--N 450
A AD+++ T+ +GWT ++E+ ++++ P+I+V+NK D SA N
Sbjct: 300 IAAQSADLVLFTLDCENGWTEAENEIYQQVKNR--------PIIIVMNKSDRLSSAQLEN 351
Query: 451 EWNKVGNSFNDH----VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ N + + T A QGI DLE +I+ V + + +A+NQRQ L
Sbjct: 352 LRQSIINQLDIKPSLIIATAATLNQGITDLEESILNAVHTENLQSANLEFAINQRQAAAL 411
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
R K AL +++++I + LP DFWTIDLR A ALG+++GE+++E VL IF +FCIGK
Sbjct: 412 TRAKIALEQVENTISDRLPFDFWTIDLRGAIHALGEVTGEEVTESVLDRIFSRFCIGK 469
>gi|384245421|gb|EIE18915.1| tRNA modification GTPase TrmE [Coccomyxa subellipsoidea C-169]
Length = 464
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/467 (48%), Positives = 316/467 (67%), Gaps = 14/467 (2%)
Query: 107 GAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEV 166
GAV IVRLSG AV I ++F+P K + + W+P SH V +G++ D +G+ +DEV
Sbjct: 3 GAVSIVRLSGAEAVQIAQQIFQPSGKMRVQQ-----WQPQSHRVHHGLLQDTNGSAIDEV 57
Query: 167 LAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDL 226
L + MLAPRSYTREDVVEL HG VC R L+ACL AGA A+PGEFTLRAFLNGRLDL
Sbjct: 58 LLLAMLAPRSYTREDVVELHTHGGGVCAARALQACLAAGARRARPGEFTLRAFLNGRLDL 117
Query: 227 SQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPL 286
SQAE V L++A++ AAAD+ALAG+ GG + V ++R+ + LL E+EAR+DFD+++PP+
Sbjct: 118 SQAEAVAALVNARTAAAADSALAGMSGGIGAAVAAMRSDAVNLLAELEARIDFDEDLPPM 177
Query: 287 NLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIV 346
+ L+ ++ +S+ V +AL+TA +LL +GLQ+A+VGRPNVGKSSLLNA S S+RAIV
Sbjct: 178 DAQLLGRRLAELSEKVSSALDTAQRGRLLSTGLQVALVGRPNVGKSSLLNALSGSQRAIV 237
Query: 347 TEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVS 406
T+I GTTRD++EA + GVPV+LLDTAG+RE D+VE++GV+RS A A GAD+++M
Sbjct: 238 TDIPGTTRDIVEAGAVMEGVPVSLLDTAGVREAGDLVERLGVQRSRAAAQGADIVLMIYD 297
Query: 407 AVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTC 466
A++GWT ED + + S+ ++E + + + V + V T
Sbjct: 298 AMEGWTEEDGVVFGGLWSSSTASEDHSTSGGSGTAAAASSARLESDATVRAACRQMVSTS 357
Query: 467 AVTGQGIQDLETAIMKIVGLHQIPAG---------GRRWAVNQRQCEQLMRTKEALVRLK 517
A +G G+ DL A++ GL + G G WAVN+RQ E L+R +EAL R
Sbjct: 358 AASGAGLDDLRAAVVHAAGLPSLNTGETQINPVPSGSGWAVNERQAEALLRAREALERAA 417
Query: 518 SSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
S+++ LP+DFWTID++DA LALG+++G + ++VL +F FCIGK
Sbjct: 418 QSVQDGLPVDFWTIDVKDALLALGEVTGSEAGQDVLDRVFSTFCIGK 464
>gi|428223747|ref|YP_007107844.1| tRNA modification GTPase trmE [Geitlerinema sp. PCC 7407]
gi|427983648|gb|AFY64792.1| tRNA modification GTPase trmE [Geitlerinema sp. PCC 7407]
Length = 467
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 230/478 (48%), Positives = 317/478 (66%), Gaps = 26/478 (5%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
+TIAAI T++ G+VGIVR+SGP A I +F+ + G W SH + Y
Sbjct: 10 TTIAAIATAVVPQQGSVGIVRVSGPQAFAIARSIFQ--------APGRQPW--DSHRILY 59
Query: 153 GVVLDRHGNV---VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
G V RH + VDE L + M PRSYTREDV E CHG + +++VL+ CLEAGA LA
Sbjct: 60 GFV--RHPDTQATVDEALLLLMQGPRSYTREDVAEFHCHGGMMAVQQVLQLCLEAGARLA 117
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFTLRAFLNGRLDL+QAE + L+ A+S AA +A+AG+QG + + +R+ C+ L
Sbjct: 118 EPGEFTLRAFLNGRLDLTQAEGIADLVGAQSPQAAQSAIAGLQGKLAQPIRHLRSLCLSL 177
Query: 270 LTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
L EIEAR+DF+D++PPL+ + ++ A+S + L TA+ +LL++GL++AIVGRPNV
Sbjct: 178 LAEIEARIDFEDDLPPLDEGYIQRQLQAVSAEARQILATADRGELLRTGLKVAIVGRPNV 237
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIRET+D VE+IGV
Sbjct: 238 GKSSLLNAWSRSDRAIVTDLPGTTRDVVESYLVVGGIPVRVLDTAGIRETEDQVEQIGVA 297
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+A A AD+++ T+ A GWT++D + IQ +ILV+NK+D P
Sbjct: 298 RSQAAAAAADLVLFTIDAQAGWTADDEAIYQVIQQRS--------LILVVNKVDLRPDLG 349
Query: 450 NEWN---KVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
++ + V T A QGI+DLE AI+ + A A+NQRQ E L
Sbjct: 350 TDFPGTLTYPAAIATVVHTAAAQQQGIEDLEKAILATIHAGATQAANLDIAINQRQAEAL 409
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+R + AL ++ +I ++LPLDFWTIDLR A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 410 LRAETALRHVQEAIAQQLPLDFWTIDLRGAIQALGEITGEEVTESVLDQIFSRFCIGK 467
>gi|81300391|ref|YP_400599.1| tRNA modification GTPase TrmE [Synechococcus elongatus PCC 7942]
gi|93141330|sp|Q8KPU2.3|MNME_SYNE7 RecName: Full=tRNA modification GTPase MnmE
gi|81169272|gb|ABB57612.1| tRNA modification GTPase trmE [Synechococcus elongatus PCC 7942]
Length = 462
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 234/473 (49%), Positives = 320/473 (67%), Gaps = 20/473 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+I G+VGIVRLSG A +I ++F+ +G W SH + YG
Sbjct: 8 TIAAIATAIVPQQGSVGIVRLSGAAATEIARQIFQ--------IAGQQPWE--SHRILYG 57
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+ D G +VDE L +PMLAPRSYTREDVVEL CHG + +++ L+ C+ AGA LA+PG
Sbjct: 58 YIRDPESGRLVDEALLLPMLAPRSYTREDVVELHCHGGLMPVQQTLQLCIRAGARLAEPG 117
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFTLRAFLNGRLDLSQAE++ LISA+S AA AAL +QG + +R +C+++L E
Sbjct: 118 EFTLRAFLNGRLDLSQAESIADLISAQSPQAAQAALGSLQGKLGHPIRQLRDRCLDILAE 177
Query: 273 IEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
+EAR+DF+D++PPL+L + ++ A D++ L TA+ +LL++GL+IAIVGRPNVGKS
Sbjct: 178 VEARIDFEDDLPPLDLEAIAAQLTAAGADMQAILSTADRGELLRTGLKIAIVGRPNVGKS 237
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNAWS+ +RAIVT++ GTTRD++E+ + V G+PV +LDTAGIRET D VE+IGVERS
Sbjct: 238 SLLNAWSRCDRAIVTDLPGTTRDLVESQLIVGGIPVQVLDTAGIRETSDQVEQIGVERSR 297
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
A AD++++T+ A GW++ED + + S P++LVINK D A
Sbjct: 298 RAAQSADLVLLTIDASAGWSAEDQTIWEAV--------SDRPILLVINKRDRLSEAERHA 349
Query: 453 NKV-GNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKE 511
+ F V+T A QGI+DLE AI+ VG + + WA+NQRQ L +
Sbjct: 350 IALPQQEFKAIVWTAAAQQQGIEDLEAAILAAVGTGDLTSANWDWALNQRQVAALTTAQT 409
Query: 512 ALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL R++ +++ +LPLDFWTIDLR+A ALG I+GE+I+E +L IF +FCIGK
Sbjct: 410 ALRRVEETLQAQLPLDFWTIDLREAIAALGSITGEEIAESMLDLIFSRFCIGK 462
>gi|307151569|ref|YP_003886953.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7822]
gi|306981797|gb|ADN13678.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7822]
Length = 458
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 226/474 (47%), Positives = 319/474 (67%), Gaps = 26/474 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+I G++GIVRLSG +A+ I VF + G +W +H + YG
Sbjct: 8 TIAAIATAIVPQQGSIGIVRLSGTLALAIARTVFY--------APGKQAWE--THRILYG 57
Query: 154 VVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
+ RH G ++DE L + MLAPRSYT+EDV+E CHG + +++VL+ CLE GA LAQ
Sbjct: 58 YI--RHPQSGQLIDEALLLLMLAPRSYTKEDVIEFHCHGGIIPVQQVLQLCLENGARLAQ 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFTLRAFLNGRLDL+QAE+V +L++++SV A+ ALAG+QG + + +R+ C+++L
Sbjct: 116 PGEFTLRAFLNGRLDLTQAESVAELVNSQSVQASQIALAGLQGKLAHPIRQLRSNCLDIL 175
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
E+EAR+DF++++PPLN + + + A+ +V L TA+ +LL+SGL++AIVGRPNVG
Sbjct: 176 AEVEARIDFEEDLPPLNEDEIKQHLAAVLIEVNQILATADRGELLRSGLKVAIVGRPNVG 235
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+P+ +LDTAGIRETDD VEKIGVER
Sbjct: 236 KSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRETDDRVEKIGVER 295
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S A AD+I++T+ A GWT ED ++ +++ P+ILVINK D + S
Sbjct: 296 SRHAAEAADLILLTIDAQTGWTPEDEQIYQQVKHR--------PLILVINKTDLQEAKSV 347
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+ + V T A +GI LE I+ V + A+NQRQ L +
Sbjct: 348 NYP---SDITSVVETVAAKNEGIDQLEKIILNSVQSGHLTVTNLEIAINQRQAAALTQAS 404
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+L +++ +I +LPLDFWTIDLR A ALG+I+GE+++E VL IF +FC+GK
Sbjct: 405 LSLQQVQETINNQLPLDFWTIDLRSAIQALGEITGEEVTESVLDRIFSRFCLGK 458
>gi|119486976|ref|ZP_01620848.1| tRNA modification GTPase [Lyngbya sp. PCC 8106]
gi|119455905|gb|EAW37039.1| tRNA modification GTPase [Lyngbya sp. PCC 8106]
Length = 469
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 233/482 (48%), Positives = 330/482 (68%), Gaps = 33/482 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI AI T+I G++GIVRLSG A+ I +F + G W SH + YG
Sbjct: 10 TIVAIATAIVPQQGSIGIVRLSGSQAIAIAKLLFA--------APGRQPWE--SHRILYG 59
Query: 154 VVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
+ RH VVDE L + MLAPRSYTREDVVE CHG + +++VL+ CLEAGA LAQ
Sbjct: 60 YI--RHPQTQQVVDEALLLLMLAPRSYTREDVVEFHCHGGIIAVQQVLQLCLEAGARLAQ 117
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFTLRAFLNGR+DL+QAE++ +L+ ++S AAA AA+AG+QG ++ + +RA C+++L
Sbjct: 118 PGEFTLRAFLNGRIDLTQAESIAELVGSQSQAAALAAIAGLQGKLATPIRQLRATCLDVL 177
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
EIEAR+DF++++PPLN+ ++ +++ +S ++ +ETA + L+SGL++AIVGRPNVG
Sbjct: 178 AEIEARIDFEEDLPPLNVPEIVSQVNQISAELSILIETAEKGERLRSGLKVAIVGRPNVG 237
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIR ++D VEKIG+ER
Sbjct: 238 KSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRNSEDQVEKIGIER 297
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S+ A AD++++T+ A GWT D E+ ++Q P+IL++NKID ++N
Sbjct: 298 SQTAAKLADLVLLTIDAEAGWTESDEEIYQQVQHR--------PLILILNKIDRV--SAN 347
Query: 451 EWN--------KVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQ 502
E + K+ V T A QGI +LETAI+ + + A A+NQRQ
Sbjct: 348 ELDAKVEEILAKLNRENLLTVKTAAALNQGITELETAILTAINAGNLQAKNLDIAINQRQ 407
Query: 503 CEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCI 562
+ R K+AL ++K +IE +LPLDFWTIDLR+A ALG+++GE+++E VL IF +FCI
Sbjct: 408 ASVITRAKKALDQMKITIENQLPLDFWTIDLREAIQALGEVTGEEVTESVLDRIFSRFCI 467
Query: 563 GK 564
GK
Sbjct: 468 GK 469
>gi|220909026|ref|YP_002484337.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7425]
gi|254811474|sp|B8HSJ3.1|MNME_CYAP4 RecName: Full=tRNA modification GTPase MnmE
gi|219865637|gb|ACL45976.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7425]
Length = 460
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 239/473 (50%), Positives = 318/473 (67%), Gaps = 19/473 (4%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
TIAAI T+I G++ IVRLSG AV I R+F + G W SH + Y
Sbjct: 6 QTIAAIATAIVPQQGSIAIVRLSGSEAVAIAQRLFI--------APGQQVWE--SHRILY 55
Query: 153 GVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
G V + R G VDE L + MLAPRSYT+EDVVE CHG + +++VL+ CLEAGA LAQP
Sbjct: 56 GYVCNPRTGQRVDEALLLLMLAPRSYTKEDVVEFHCHGGMIAVQQVLQLCLEAGAVLAQP 115
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFTLRAFL+GRLDL+QAE+V L+ AKS AA AALAG+QG + +R CI++L
Sbjct: 116 GEFTLRAFLHGRLDLTQAESVADLVGAKSPQAAQAALAGLQGKLIQPLQQLRRTCIDILA 175
Query: 272 EIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
EIEAR+DF++++PPL+LN + +I +V L TA+ +LL++GL++AIVGRPNVGK
Sbjct: 176 EIEARIDFEEDLPPLDLNQISSQIQHSLTEVNRILATADRGELLRTGLKVAIVGRPNVGK 235
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLNAWS+S+RAIVTE+ GTTRDV+E+ + V G+PV +LDTAGIRET D VE+IGVERS
Sbjct: 236 SSLLNAWSRSDRAIVTELPGTTRDVVESYLVVGGIPVQVLDTAGIRETSDQVEQIGVERS 295
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
A AD++++ + A GWT+ED + ++Q +ILVINKID A
Sbjct: 296 HKAAQAADLVLLVIDAQTGWTAEDQAIYTQVQERS--------LILVINKIDLVDQAFQP 347
Query: 452 WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKE 511
+ + ++ T A QGI+DLE+AI+ V ++ WA+NQRQ L R K
Sbjct: 348 QACLPDPALTYLCTAAAQNQGIEDLESAILSKVQGGELEGANLDWAINQRQAAALTRAKL 407
Query: 512 ALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+L ++ +I +LPLDFWTIDLR+A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 408 SLENVQETIANQLPLDFWTIDLREAIRALGEITGEEVTESVLDQIFSRFCIGK 460
>gi|113478139|ref|YP_724200.1| tRNA modification GTPase TrmE [Trichodesmium erythraeum IMS101]
gi|123056073|sp|Q10VJ7.1|MNME_TRIEI RecName: Full=tRNA modification GTPase MnmE
gi|110169187|gb|ABG53727.1| tRNA modification GTPase trmE [Trichodesmium erythraeum IMS101]
Length = 467
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 229/476 (48%), Positives = 321/476 (67%), Gaps = 22/476 (4%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
+TIAAI T+I G+VGIVR+SG A+ I +F + G W +H + Y
Sbjct: 10 NTIAAIATAIVPQQGSVGIVRMSGSEAMKIAQTLFH--------APGKQVWE--THHILY 59
Query: 153 GVVLDRH-GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
G + H G +VDE L + M APRSYTREDVVE CHG + +++VL+ C+EAGA LAQP
Sbjct: 60 GYIRHPHTGQLVDETLLLIMKAPRSYTREDVVEFHCHGGIIAIQQVLQLCIEAGAELAQP 119
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFTLRAFLNGRLDL+QAE++ +L+ ++S AAA ALAG+QG +S + +RA C+++L
Sbjct: 120 GEFTLRAFLNGRLDLTQAESIAELVGSQSPAAAQVALAGLQGKLASPIRHLRACCLDILA 179
Query: 272 EIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
EIEAR+DF++++PPL+ + + K+ + D+ L TA+ +LL++GL++AI+GRPNVGK
Sbjct: 180 EIEARIDFEEDLPPLDESEISQKLDDILVDLSMVLATASRGELLRTGLKVAIIGRPNVGK 239
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLNAWS S+RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIRET+D VEKIGVERS
Sbjct: 240 SSLLNAWSHSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETEDRVEKIGVERS 299
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
A AD++++T+ A GWT D + +++ +IL+INK+D +E
Sbjct: 300 CQAAESADIVLLTIDAQVGWTELDEVIYQQVKHRF--------LILIINKVDQVDLVHSE 351
Query: 452 WNK---VGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ + + V T A+ QGI++LE AI+ V L + +AVNQRQ L R
Sbjct: 352 LIRSIFYPETIKNVVATAAINNQGIEELEAAILNAVNLDNVQPENLDFAVNQRQAAALTR 411
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K AL + ++I+ LPLDFWTIDLR + ALG+++GED++E VL IF +FCIGK
Sbjct: 412 AKIALEQCLNTIKNNLPLDFWTIDLRGSIYALGEVTGEDVTESVLDIIFSRFCIGK 467
>gi|411117053|ref|ZP_11389540.1| tRNA modification GTPase trmE [Oscillatoriales cyanobacterium
JSC-12]
gi|410713156|gb|EKQ70657.1| tRNA modification GTPase trmE [Oscillatoriales cyanobacterium
JSC-12]
Length = 456
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 234/477 (49%), Positives = 315/477 (66%), Gaps = 33/477 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+I G+VGIVR+SG AV I ++F P+ G W SH + YG
Sbjct: 7 TIAAIATAIVPEQGSVGIVRISGSQAVAIAQQIFHPL--------GRPPWE--SHRILYG 56
Query: 154 VVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
+ RH G +VDE L + MLAPRSYTREDVVE CHG + +++VL+ C+ GA LA+
Sbjct: 57 TI--RHPQTGQIVDEALLLLMLAPRSYTREDVVEFHCHGGIMAVQQVLQLCIAQGARLAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFTLRAFLNGRLDL+QAE++ L+ A+S AA ALAG+QG + + +RA CI +L
Sbjct: 115 PGEFTLRAFLNGRLDLTQAESIADLVGARSPQAAQFALAGLQGKLAHPIRQLRAICINIL 174
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
EIEAR+DF++++PPL+ + ++ + +VE L TA +LL+SGL++AIVGRPNVG
Sbjct: 175 AEIEARIDFEEDLPPLDQEDIKRRLQQVLDEVEQILATAEQGELLRSGLKVAIVGRPNVG 234
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIRET+D VEKIGVER
Sbjct: 235 KSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVSGIPVQVLDTAGIRETEDQVEKIGVER 294
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID---CAPS 447
S A AD+I++ + A GWT +D + +++ P+IL+ NKID PS
Sbjct: 295 SRQTAQKADLILLVIDASLGWTDDDQAVYEQVRDR--------PLILITNKIDLVETVPS 346
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
V V T A QGI LE AI+K V ++ A A+NQRQ L
Sbjct: 347 LPTLPIPV-------VKTAAALNQGIDALEDAILKTVQAGKLNALNLDLAINQRQAAALT 399
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++AL +++ +I +ELPLDFWTIDLR A LGQ+ GE+++E VL +F +FCIGK
Sbjct: 400 QARQALQQVQLTITQELPLDFWTIDLRSAIHFLGQVIGEEVTESVLDQVFSRFCIGK 456
>gi|425450916|ref|ZP_18830739.1| tRNA modification GTPase mnmE [Microcystis aeruginosa PCC 7941]
gi|389768038|emb|CCI06742.1| tRNA modification GTPase mnmE [Microcystis aeruginosa PCC 7941]
Length = 457
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 234/477 (49%), Positives = 314/477 (65%), Gaps = 26/477 (5%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
T TIAAI T+I G++GIVRLSG AV I R+F ++K W+ SH +
Sbjct: 4 TGDTIAAIATAIVPEQGSIGIVRLSGSQAVAIARRLFHTRNRQK--------WQ--SHRL 53
Query: 151 EYGVVLDRHGN---VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
YG + RH ++DE L + MLAPRS+TREDVVE CHG + +++VL+ CLE GA
Sbjct: 54 LYGYI--RHPQSQAIIDEALLLLMLAPRSFTREDVVEFHCHGGIMPVQQVLQLCLENGAR 111
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
LAQ GEF+LRAFLNGR+DL+QAE+V L+ A+S AA ALAG+QG + + +RA C+
Sbjct: 112 LAQAGEFSLRAFLNGRIDLTQAESVVDLVGARSPQAAQFALAGLQGKLAQPIRHLRATCL 171
Query: 268 ELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
++L EIEAR+DF++++PPL+ V+ I + V L TA +LL+SGL++AIVGRP
Sbjct: 172 DILAEIEARIDFEEDLPPLDHEAVLHSIEQVFCQVNLILATAERGELLRSGLKVAIVGRP 231
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLNAWS+S+RAIVT++ GTTRD++E+ + V G+PV +LDTAGIR D VE+IG
Sbjct: 232 NVGKSSLLNAWSRSDRAIVTDLPGTTRDIVESQLVVAGIPVQVLDTAGIRSASDRVEQIG 291
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS A AD++++TVSA GWT ED E+ + + +ILVINKID A
Sbjct: 292 VERSRQTARSADLVLLTVSAESGWTQEDEEIYRSVSDRR--------LILVINKIDLANP 343
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ + V A QGI+DLE I+ V +I A A+NQRQ L
Sbjct: 344 ETVIYPA---EIERVVKLSAAQNQGIEDLEKTIINAVQNQEIQAANLDLAINQRQAAALT 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
R K AL ++K++I+E LP DFW+IDLR A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 401 RAKIALQQVKNTIDENLPFDFWSIDLRTAIQALGEITGEEVTESVLDRIFSRFCIGK 457
>gi|145347727|ref|XP_001418313.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578542|gb|ABO96606.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 525
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 238/458 (51%), Positives = 314/458 (68%), Gaps = 10/458 (2%)
Query: 113 RLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWR--PTSHVVEYGVVLDRHGNVVDEVLAVP 170
RLSG A I GRVF+ + S+ + + SH YGVV+D G ++DEV+A+
Sbjct: 72 RLSGSDARAIGGRVFRRAGGATRASASANAANAFDESHKATYGVVVDGDGEIIDEVIALA 131
Query: 171 MLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAE 230
+APRSYT EDVVEL CHG VC++R + CL+ GA LA+ GEFTLRAFLNGRLDL+QAE
Sbjct: 132 FIAPRSYTAEDVVELHCHGGAVCVQRAMARCLDEGARLARNGEFTLRAFLNGRLDLTQAE 191
Query: 231 NVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNL 290
V L+SAK+ AAAD+ALA ++GG ++ V+ R C++LL E+EARLDFDDEM PL++
Sbjct: 192 AVHALVSAKTTAAADSALAAMRGGLTTPVSEARRACVDLLAELEARLDFDDEMVPLDVRA 251
Query: 291 VMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIA 350
+ K + + L TA LL++G+ +AIVGRPNVGKS LLNA ++SER+IVT
Sbjct: 252 IEAKAAGARETIRKVLTTAKRGALLETGVTVAIVGRPNVGKSRLLNALTRSERSIVTSRE 311
Query: 351 GTTRDVIEASVTVCGVPVTLLDTAGIR-ETDDIVEKIGVERSEAVALGADVIIMTVSAVD 409
GTTRDV+EASV + G+P TLLDTAGIR ETDD VEKIGVERS A A GAD++++ V A
Sbjct: 312 GTTRDVVEASVNIGGLPATLLDTAGIRSETDDEVEKIGVERSRAAAAGADIVVLVVDAER 371
Query: 410 GWTSEDSELL-NRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGNSFNDHVFTC 466
GW SEDS + + I +N ++ SS +LV+NK D A ASN +V SF+ V
Sbjct: 372 GWVSEDSAIWQSEIANNARARGSS---VLVVNKTDIA-DASNATPPPEVLESFSTVVHVS 427
Query: 467 AVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPL 526
A TG ++ LE AI++ V ++ A G WA NQRQ E L ++L RL+ +I ++PL
Sbjct: 428 AATGDNLEHLEHAIVRTVSGGEVDAEGGAWAANQRQAEALQNALDSLDRLRDTIAADMPL 487
Query: 527 DFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
DFWTIDLR+AA ALG ++G+D++E+VL IF +FCIGK
Sbjct: 488 DFWTIDLREAAFALGSVTGDDVTEDVLDTIFERFCIGK 525
>gi|425433973|ref|ZP_18814446.1| tRNA modification GTPase mnmE [Microcystis aeruginosa PCC 9432]
gi|389678690|emb|CCH92466.1| tRNA modification GTPase mnmE [Microcystis aeruginosa PCC 9432]
Length = 457
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 234/477 (49%), Positives = 313/477 (65%), Gaps = 26/477 (5%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
T TIAAI T+I G++GIVRLSG AV I R+F ++K W+ SH +
Sbjct: 4 TGDTIAAIATAIVPEQGSIGIVRLSGSQAVAIARRLFHTRNRQK--------WQ--SHRL 53
Query: 151 EYGVVLDRHGN---VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
YG + RH ++DE L + MLAPRS+TREDVVE CHG + +++VL+ CLE GA
Sbjct: 54 LYGYI--RHPQSQAIIDEALLLLMLAPRSFTREDVVEFHCHGGIMPVQQVLQLCLENGAR 111
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
LAQ GEF+LRAFLNGR+DL+QAE+V L+ A+S AA ALAG+QG + + +RA C+
Sbjct: 112 LAQAGEFSLRAFLNGRIDLTQAESVVDLVGARSPQAAQFALAGLQGKLAQPIRHLRATCL 171
Query: 268 ELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
++L EIEAR+DF++++PPL+ V+ I + V L TA +LL+SGL++AIVGRP
Sbjct: 172 DILAEIEARIDFEEDLPPLDHEAVLHSIEQVFCQVNLILATAERGELLRSGLKVAIVGRP 231
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLNAWS+S+RAIVT++ GTTRD++E+ + V G+PV +LDTAGIR D VE+IG
Sbjct: 232 NVGKSSLLNAWSRSDRAIVTDLPGTTRDIVESQLVVAGIPVQVLDTAGIRSASDRVEQIG 291
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS A AD++++TVSA GWT ED E+ + + +ILVINKID A
Sbjct: 292 VERSRQTARSADLVLLTVSAESGWTQEDEEIYRSVSDRR--------LILVINKIDLANP 343
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ + V A QGI+DLE I+ V +I A A+NQRQ L
Sbjct: 344 ETVIYPA---EIERVVKLSAAQNQGIEDLEKTIINAVQNQEIQAANLDLAINQRQAAALT 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
R K AL ++K +I+E LP DFW+IDLR A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 401 RAKIALQQVKKTIDENLPFDFWSIDLRTAIQALGEITGEEVTESVLDRIFSRFCIGK 457
>gi|428207950|ref|YP_007092303.1| tRNA modification GTPase trmE [Chroococcidiopsis thermalis PCC
7203]
gi|428009871|gb|AFY88434.1| tRNA modification GTPase trmE [Chroococcidiopsis thermalis PCC
7203]
Length = 459
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 229/475 (48%), Positives = 318/475 (66%), Gaps = 26/475 (5%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
STIAAI T++ G+VGIVR+SG A+ I +F + G +W SH + Y
Sbjct: 8 STIAAIATAVVPQQGSVGIVRVSGNEALAIAHHLFY--------APGKQAWE--SHRILY 57
Query: 153 GVVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
G + RH +VDE L + M APRSYTREDVVE CHG + +++VL+ CL GA LA
Sbjct: 58 GYI--RHPQTQQLVDEALLLIMQAPRSYTREDVVEFHCHGGIMAVQQVLQLCLAEGAKLA 115
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
QPGEFTLRAFLNGRLDL+QAE++ L+ A+S AA ALAGIQG + + +R KC+++
Sbjct: 116 QPGEFTLRAFLNGRLDLTQAESIADLVGARSPQAAQTALAGIQGKLAHPIRQLRTKCLDV 175
Query: 270 LTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
L EIEAR+DF++++PPL+ LV ++ +V L TA+ +LL++GL++AIVGRPNV
Sbjct: 176 LAEIEARIDFEEDLPPLDETLVRAELAQFEVEVSKILATAHQGELLRTGLKVAIVGRPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+P+ +LDTAGIR T+D VEK+GVE
Sbjct: 236 GKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRATEDRVEKMGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS + A AD++++T+ A GWT D E+ +++ P+ILVINKID A +
Sbjct: 296 RSLSSAQAADLVLLTIDAAAGWTQADEEIYLQVKHR--------PLILVINKIDLAAVET 347
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+ + V T A +GI LE AI+ V ++ + A+NQRQ L+R
Sbjct: 348 VNYPA---EISQVVTTAAACDRGIDALEQAILAKVRSGKVDSANLDLAINQRQAAALIRA 404
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ L +++ +IE++LPLDFWTIDLR A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 405 QTCLDQVREAIEQQLPLDFWTIDLRGAIQALGEITGEEVTESVLDRIFSQFCIGK 459
>gi|218437570|ref|YP_002375899.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7424]
gi|218170298|gb|ACK69031.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7424]
Length = 458
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/474 (46%), Positives = 320/474 (67%), Gaps = 26/474 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+I G++GIVRLSG A+DI +F + G W SH + YG
Sbjct: 8 TIAAIATAIVPQQGSIGIVRLSGAKALDIARTLFH--------APGKQVWE--SHRILYG 57
Query: 154 VVLDRHGN---VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
+ RH ++DE L + M APRSYT+EDV+E CHG + +++VL+ CLE GA LAQ
Sbjct: 58 YI--RHPQSQILIDEALLLLMFAPRSYTKEDVIEFHCHGGIIPVQQVLQLCLEQGARLAQ 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFTLRAFLNGR+DL++AE+V +L++++SV A+ ALAG++G + + +R+ C+++L
Sbjct: 116 PGEFTLRAFLNGRIDLTKAESVAELVNSQSVQASQVALAGLEGKLAHPIRQLRSTCLDIL 175
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
E+EAR+DF++++PPL+ + ++ + +V L TA +LL++GL++AIVGRPNVG
Sbjct: 176 AEVEARIDFEEDLPPLDEEDIKQRLTEVLVEVNQILATAERGELLRNGLKVAIVGRPNVG 235
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+P+ +LDTAGIRET D VEKIGVER
Sbjct: 236 KSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRETQDRVEKIGVER 295
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S A AD+I++T+ A GWT ED E+ +++ P+IL+INK D A + +
Sbjct: 296 SRQAAQRADLILLTIDAQTGWTGEDEEIYQQVKHR--------PLILIINKTDLASADTI 347
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+ V T A +GI+DLE I+ V ++ +A+NQRQ L RT
Sbjct: 348 NYPW---EITQIVTTVAAKSEGIEDLEQMILNSVQAGKLTGANLEFAINQRQAAALTRTS 404
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL +++ +I+ +LPLDFWTIDLR A ALG+++GE+++E +L+ +F +FCIGK
Sbjct: 405 VALEQVQDTIKNQLPLDFWTIDLRSAIQALGEVTGEEVTESILNRVFSRFCIGK 458
>gi|427712085|ref|YP_007060709.1| tRNA modification GTPase trmE [Synechococcus sp. PCC 6312]
gi|427376214|gb|AFY60166.1| tRNA modification GTPase trmE [Synechococcus sp. PCC 6312]
Length = 457
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 222/459 (48%), Positives = 312/459 (67%), Gaps = 22/459 (4%)
Query: 107 GAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLD-RHGNVVDE 165
G++GIVRLSGP AV I ++F+ + + +W +SH + YG V+D +VDE
Sbjct: 20 GSIGIVRLSGPEAVAIAQQIFRGGRDR--------AW--SSHRILYGHVVDPASATLVDE 69
Query: 166 VLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLD 225
VL + MLAPRSYT+EDV+E CHG + +++VL+ CL GA LAQPGEFTLRA LNGRLD
Sbjct: 70 VLLLVMLAPRSYTKEDVIEFHCHGGLIPVQQVLQLCLAQGAKLAQPGEFTLRAVLNGRLD 129
Query: 226 LSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPP 285
+ QAE+V L+ AKS A ALAG+QG + + ++R+ C+++L EIEARLDF D++PP
Sbjct: 130 VIQAESVADLVGAKSPQTAQMALAGLQGKLAQPIRAIRSACLDMLAEIEARLDFADDLPP 189
Query: 286 LNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAI 345
L + ++ + Q + L TAN +LL++GL+IAIVGRPNVGKSSLLNAWS+++RAI
Sbjct: 190 LGETALQTQLAHLLQQLGEILSTANRGELLRTGLKIAIVGRPNVGKSSLLNAWSRTDRAI 249
Query: 346 VTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTV 405
VT + GTTRDV+E+S+ V G+P+ +LDTAG+R+T+D VEKIGVERS A AD++++ +
Sbjct: 250 VTNLPGTTRDVVESSLVVGGIPIQVLDTAGMRDTEDQVEKIGVERSRQAASHADLVLLVI 309
Query: 406 SAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFT 465
A GWT D + ++S P++LV+NKID A+ + + F HV T
Sbjct: 310 DAQTGWTQADQVIYEPLKSR--------PLLLVVNKIDL---ATPDLTAILEQFPCHVKT 358
Query: 466 CAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELP 525
A G GI +LE AI++ V Q+ A A+NQRQ L + ++L +++ +I E+LP
Sbjct: 359 AAAQGTGITELEQAILEQVHQGQVTAANLDIAINQRQAATLTQAWQSLNQVQQAIAEQLP 418
Query: 526 LDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
LDFWTIDLR A ALGQ++GE+++E +L IF +FCIGK
Sbjct: 419 LDFWTIDLRAAITALGQVTGEELTESMLERIFSQFCIGK 457
>gi|422301841|ref|ZP_16389206.1| tRNA modification GTPase mnmE [Microcystis aeruginosa PCC 9806]
gi|389789084|emb|CCI14892.1| tRNA modification GTPase mnmE [Microcystis aeruginosa PCC 9806]
Length = 457
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/475 (48%), Positives = 312/475 (65%), Gaps = 22/475 (4%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
T TIAAI T+I G++GIVRLSG AV I R+F ++K W+ SH +
Sbjct: 4 TGDTIAAIATAIVPEQGSIGIVRLSGSEAVAIARRLFHTRNRQK--------WQ--SHRL 53
Query: 151 EYGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG + H ++DE L + MLAPRS+TREDVVE CHG + +++VL+ CLE GA LA
Sbjct: 54 LYGYIRHPHSQAIIDEALLLLMLAPRSFTREDVVEFHCHGGIMPVQQVLQLCLENGARLA 113
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
Q GEF+LRAFLNGR+DL+QAE+V L+ A+S AA ALAG+QG + + +RA C+++
Sbjct: 114 QAGEFSLRAFLNGRIDLTQAESVVDLVGARSPQAAQFALAGLQGKLAQPIRHLRATCLDI 173
Query: 270 LTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
L EIEAR+DF++++PPL+ V+ I + V L TA +LL+SGL++AIVGRPNV
Sbjct: 174 LAEIEARIDFEEDLPPLDHEAVLHSIEQVFCQVNLILATAERGELLRSGLKVAIVGRPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNAWS+S+RAIVT++ GTTRD++E+ + V G+PV +LDTAGIR D VE+IGVE
Sbjct: 234 GKSSLLNAWSRSDRAIVTDLPGTTRDIVESQLVVAGIPVQVLDTAGIRSASDRVEQIGVE 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS A AD++++TVSA GWT ED E+ + + +ILVINKID A +
Sbjct: 294 RSRQTARSADLVLLTVSAESGWTQEDEEIYRSVSDRR--------LILVINKIDLAHPET 345
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+ V A QGI+DLE I+ V ++ A A+NQRQ L R
Sbjct: 346 VIYPA---EIERVVKLSAAQNQGIEDLEKTIINAVQNQELQAANLDLAINQRQAAALTRA 402
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K AL ++K +I++ LP DFW+IDLR A +LG+I+GE+++E VL IF +FCIGK
Sbjct: 403 KIALQQVKKTIDQNLPFDFWSIDLRTAIQSLGEITGEEVTESVLDRIFSRFCIGK 457
>gi|205829221|sp|Q5N638.2|MNME_SYNP6 RecName: Full=tRNA modification GTPase MnmE
Length = 462
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 232/473 (49%), Positives = 318/473 (67%), Gaps = 20/473 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+I G+VGIVRLSG A +I ++F+ +G W SH + YG
Sbjct: 8 TIAAIATAIVPQQGSVGIVRLSGAAATEIARQIFQ--------IAGQQPWE--SHRILYG 57
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+ D G +VDE L +PMLAPRSYTREDVVEL CHG + +++ L+ C+ AGA LA+PG
Sbjct: 58 YIRDPESGRLVDEALLLPMLAPRSYTREDVVELHCHGGLMPVQQTLQLCIRAGARLAEPG 117
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFTLRAFLNGRLDLSQAE++ LISA+S AA AAL +QG + +R +C+++L E
Sbjct: 118 EFTLRAFLNGRLDLSQAESIADLISAQSPQAAQAALGSLQGKLGHPIRQLRDRCLDILAE 177
Query: 273 IEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
+EAR+DF+D++PPL+L + ++ A D++ L TA+ +LL++GL+IAIVGRPNVGKS
Sbjct: 178 VEARIDFEDDLPPLDLEAIAAQLTAAGADMQAILSTADRGELLRTGLKIAIVGRPNVGKS 237
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNAWS+ +RAIVT++ G TRD++E+ + V G+PV +LDTAGIRET D VE+IGVERS
Sbjct: 238 SLLNAWSRCDRAIVTDLPGRTRDLVESQLIVGGIPVQVLDTAGIRETSDQVEQIGVERSR 297
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
A AD++++T+ A GW++ED + + S P++LVINK D A
Sbjct: 298 RAAQSADLVLLTIDASAGWSAEDQTIWEAV--------SDRPILLVINKRDRLSEAERHA 349
Query: 453 NKV-GNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKE 511
+ F V+T A +GI+DLE AI+ VG + + WA+NQRQ L +
Sbjct: 350 IALPQQEFKAIVWTAAAQQKGIEDLEAAILAAVGTGDLTSANWDWALNQRQVAALTTAQT 409
Query: 512 ALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL R++ +++ +LPLDFWTIDLR+A ALG I+GE I+E +L IF +FCIGK
Sbjct: 410 ALRRVEETLQAQLPLDFWTIDLREAIAALGSITGEGIAESMLDLIFSRFCIGK 462
>gi|56750048|ref|YP_170749.1| tRNA modification GTPase TrmE [Synechococcus elongatus PCC 6301]
gi|56685007|dbj|BAD78229.1| thiophen and furan oxidation protein [Synechococcus elongatus PCC
6301]
Length = 482
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 232/473 (49%), Positives = 318/473 (67%), Gaps = 20/473 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+I G+VGIVRLSG A +I ++F+ +G W SH + YG
Sbjct: 28 TIAAIATAIVPQQGSVGIVRLSGAAATEIARQIFQ--------IAGQQPWE--SHRILYG 77
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+ D G +VDE L +PMLAPRSYTREDVVEL CHG + +++ L+ C+ AGA LA+PG
Sbjct: 78 YIRDPESGRLVDEALLLPMLAPRSYTREDVVELHCHGGLMPVQQTLQLCIRAGARLAEPG 137
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFTLRAFLNGRLDLSQAE++ LISA+S AA AAL +QG + +R +C+++L E
Sbjct: 138 EFTLRAFLNGRLDLSQAESIADLISAQSPQAAQAALGSLQGKLGHPIRQLRDRCLDILAE 197
Query: 273 IEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
+EAR+DF+D++PPL+L + ++ A D++ L TA+ +LL++GL+IAIVGRPNVGKS
Sbjct: 198 VEARIDFEDDLPPLDLEAIAAQLTAAGADMQAILSTADRGELLRTGLKIAIVGRPNVGKS 257
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNAWS+ +RAIVT++ G TRD++E+ + V G+PV +LDTAGIRET D VE+IGVERS
Sbjct: 258 SLLNAWSRCDRAIVTDLPGRTRDLVESQLIVGGIPVQVLDTAGIRETSDQVEQIGVERSR 317
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
A AD++++T+ A GW++ED + + S P++LVINK D A
Sbjct: 318 RAAQSADLVLLTIDASAGWSAEDQTIWEAV--------SDRPILLVINKRDRLSEAERHA 369
Query: 453 NKV-GNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKE 511
+ F V+T A +GI+DLE AI+ VG + + WA+NQRQ L +
Sbjct: 370 IALPQQEFKAIVWTAAAQQKGIEDLEAAILAAVGTGDLTSANWDWALNQRQVAALTTAQT 429
Query: 512 ALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL R++ +++ +LPLDFWTIDLR+A ALG I+GE I+E +L IF +FCIGK
Sbjct: 430 ALRRVEETLQAQLPLDFWTIDLREAIAALGSITGEGIAESMLDLIFSRFCIGK 482
>gi|425458787|ref|ZP_18838273.1| tRNA modification GTPase mnmE [Microcystis aeruginosa PCC 9808]
gi|389824170|emb|CCI27096.1| tRNA modification GTPase mnmE [Microcystis aeruginosa PCC 9808]
Length = 457
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 232/477 (48%), Positives = 313/477 (65%), Gaps = 26/477 (5%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
T TIAAI T+I G++GIVRLSG AV I R+F ++K W+ SH +
Sbjct: 4 TGDTIAAIATAIVPEQGSIGIVRLSGSQAVAIARRLFHTRNRQK--------WQ--SHRL 53
Query: 151 EYGVVLDRHGN---VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
YG + RH ++DE L + MLAPRS+TREDVVE CHG + +++VL+ CLE GA
Sbjct: 54 LYGYI--RHPQSQAIIDEALLLLMLAPRSFTREDVVEFHCHGGIMPVQQVLQLCLENGAR 111
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
LAQ GEF+LRAFLNGR+DL+QAE+V L+ A+S AA ALAG+QG + + +RA C+
Sbjct: 112 LAQAGEFSLRAFLNGRIDLTQAESVVDLVGARSPQAAQFALAGLQGKLAQPIRHLRATCL 171
Query: 268 ELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
++L EIEAR+DF++++PPL+ V+ I + V L TA +LL+SGL++AIVGRP
Sbjct: 172 DILAEIEARIDFEEDLPPLDHEAVLHSIEQVFCQVNLILATAERGELLRSGLKVAIVGRP 231
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLNAWS+S+RAIVT++ GTTRD++E+ + V G+PV +LDTAGIR D VE+IG
Sbjct: 232 NVGKSSLLNAWSRSDRAIVTDLPGTTRDIVESQLVVAGIPVQVLDTAGIRSASDRVEQIG 291
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS A AD++++TVSA GWT ED E+ + + +ILVINKID
Sbjct: 292 VERSRQTARSADLVLLTVSAESGWTEEDEEIYRSVSDRR--------LILVINKIDLVNP 343
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ + V AV QGI+DLE I+ V ++ A A+NQRQ L
Sbjct: 344 ETVIYPA---EIERVVKLSAVQNQGIEDLEKTIINAVQNQELQAANLDLAINQRQAAALT 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
R K AL ++K +I++ LP DFW+IDLR A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 401 RAKIALQQVKKTIDQNLPFDFWSIDLRTAIQALGEITGEEVTESVLDRIFSRFCIGK 457
>gi|425440962|ref|ZP_18821253.1| tRNA modification GTPase mnmE [Microcystis aeruginosa PCC 9717]
gi|389718499|emb|CCH97565.1| tRNA modification GTPase mnmE [Microcystis aeruginosa PCC 9717]
Length = 457
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/477 (48%), Positives = 314/477 (65%), Gaps = 26/477 (5%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
T TIAAI T+I G++GIVRLSG AV I R+F ++K W+ SH +
Sbjct: 4 TGDTIAAIATAIVPEQGSIGIVRLSGSQAVAIARRLFHSPNRQK--------WQ--SHRI 53
Query: 151 EYGVVLDRHGN---VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
YG + RH ++DE L + MLAPRS+TREDVVE CHG + +++VL+ CLE GA
Sbjct: 54 LYGYI--RHPQSQAIIDEALLLLMLAPRSFTREDVVEFHCHGGIMPVQQVLQLCLENGAR 111
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
LAQ GEF+LRAFLNGR+DL+QAE+V L+ A+S AA ALAG+QG + + +RA C+
Sbjct: 112 LAQAGEFSLRAFLNGRIDLTQAESVVDLVGARSPQAAQFALAGLQGKLAQPIRHLRATCL 171
Query: 268 ELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
++L EIEAR+DF++++PPL+ +++ I + V L TA +LL+SGL++AIVGRP
Sbjct: 172 DILAEIEARIDFEEDLPPLDCEAILNSIEQVFCQVNLILATAERGELLRSGLKVAIVGRP 231
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLNAWS+S+RAIVT++ GTTRD++E+ + V G+PV +LDTAGIR D VE+IG
Sbjct: 232 NVGKSSLLNAWSRSDRAIVTDLPGTTRDIVESQLVVAGIPVQVLDTAGIRSASDRVEQIG 291
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS A AD++++TVSA GWT ED E+ + + +ILVINKID A
Sbjct: 292 VERSRQTARSADLVLLTVSAESGWTREDEEIYRSVSDRR--------LILVINKIDLAHP 343
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ + V A QGI+DLE I+ V ++ A A+NQRQ L
Sbjct: 344 ETVIYPA---EIERVVKLSAAQNQGIEDLEKTIINAVQNQELQAANLDLAINQRQAAALT 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
R K AL ++K +I++ LP DFW+IDLR A +LG+I+GE+++E VL IF +FCIGK
Sbjct: 401 RAKIALQQVKKTIDQNLPFDFWSIDLRTAIQSLGEITGEEVTESVLDRIFSRFCIGK 457
>gi|425447246|ref|ZP_18827237.1| tRNA modification GTPase mnmE [Microcystis aeruginosa PCC 9443]
gi|425456677|ref|ZP_18836383.1| tRNA modification GTPase mnmE [Microcystis aeruginosa PCC 9807]
gi|389732237|emb|CCI03804.1| tRNA modification GTPase mnmE [Microcystis aeruginosa PCC 9443]
gi|389802145|emb|CCI18747.1| tRNA modification GTPase mnmE [Microcystis aeruginosa PCC 9807]
Length = 457
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 232/477 (48%), Positives = 314/477 (65%), Gaps = 26/477 (5%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
T TIAAI T+I G++GIVRLSG AV I R+F ++K W+ SH +
Sbjct: 4 TGDTIAAIATAIVPEQGSIGIVRLSGSEAVAIARRLFYTRNRQK--------WQ--SHRL 53
Query: 151 EYGVVLDRHGN---VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
YG + RH ++DE L + MLAPRS+TREDVVE CHG + +++VL+ CLE GA
Sbjct: 54 LYGYI--RHPQSRAIIDEALLLLMLAPRSFTREDVVEFHCHGGIMPVQQVLQLCLENGAR 111
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
LAQ GEF+LRAFLNGR+DL+QAE+V L+ A+S AA ALAG+QG + + +RA C+
Sbjct: 112 LAQAGEFSLRAFLNGRIDLTQAESVVDLVGARSPQAAQFALAGLQGKLAQPIRHLRATCL 171
Query: 268 ELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
++L EIEAR+DF++++PPL+ V+ I + V L TA +LL+SGL++AIVGRP
Sbjct: 172 DILAEIEARIDFEEDLPPLDHEAVLHSIEQVFCQVNLILATAERGELLRSGLKVAIVGRP 231
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLNAWS+S+RAIVT++ GTTRD++E+ + V G+PV +LDTAGIR D VE+IG
Sbjct: 232 NVGKSSLLNAWSRSDRAIVTDLPGTTRDIVESQLVVAGIPVQVLDTAGIRSASDRVEQIG 291
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS A AD++++TVSA GWT ED E+ + + +ILVINKID
Sbjct: 292 VERSRQTARSADLVLLTVSAESGWTQEDEEIYRSVSDRR--------LILVINKIDLVNP 343
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ + V AV QGI+DLE I+ V ++ A A+NQRQ L
Sbjct: 344 ETVIYPA---EIERVVKLSAVQNQGIEDLEKTIINAVQNQELQAANLDLAINQRQAAALT 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
R K AL ++K +I+++LP DFW+IDLR A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 401 RAKIALEQVKKTIDQDLPFDFWSIDLRTAIQALGEITGEEVTESVLDRIFSRFCIGK 457
>gi|334116933|ref|ZP_08491025.1| tRNA modification GTPase mnmE [Microcoleus vaginatus FGP-2]
gi|333461753|gb|EGK90358.1| tRNA modification GTPase mnmE [Microcoleus vaginatus FGP-2]
Length = 461
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 237/489 (48%), Positives = 325/489 (66%), Gaps = 38/489 (7%)
Query: 84 ESEEKAGTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSW 143
ES K GT IAAI T+I G+VGIVR+SG A+ I +F + G W
Sbjct: 3 ESLTKGGT---IAAIATAIVPQQGSVGIVRVSGSAALKIAETLFC--------APGRQIW 51
Query: 144 RPTSHVVEYGVVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRA 200
SH + YG + RH +VDE L + M APRS+TREDVVE CHG + +++VL+
Sbjct: 52 E--SHRILYGHI--RHPKTQELVDEALLLIMKAPRSFTREDVVEFHCHGGIMAVQQVLQL 107
Query: 201 CLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVT 260
CLE GA LAQPGEF+LRAFLNGRLDL+QAE++ L+ AKS AAA +ALAG+QG + +
Sbjct: 108 CLENGARLAQPGEFSLRAFLNGRLDLTQAESIADLVGAKSPAAAQSALAGLQGKLAQPIR 167
Query: 261 SVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQ 320
+R C+++L EIEAR+DF++++PPL+ +I+ + +++ L TA+ +LL++GL+
Sbjct: 168 KLRTTCLDVLAEIEARIDFEEDLPPLDEAKTSLEINHVLEELSTILATADRGELLRTGLK 227
Query: 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD 380
+AIVGRPNVGKSSLLNAWSKS+RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIRET+
Sbjct: 228 VAIVGRPNVGKSSLLNAWSKSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETE 287
Query: 381 DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVIN 440
D VEKIGVERS A A AD++++T+ A GWT EDSE+ +++ + +I++IN
Sbjct: 288 DKVEKIGVERSRAAAKQADLVLLTIDAESGWTEEDSEIYEQVKHRQ--------LIIIIN 339
Query: 441 KIDCAPSA-----SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRR 495
KID S+E +++ V T A +GI DLETAI+ V + A
Sbjct: 340 KIDLVKRIPELPFSSEIHRI-------VTTAAALDRGIADLETAILDAVSGANLQAANSD 392
Query: 496 WAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSN 555
A+NQRQ L R K +L + +I +LPLDFWTIDLR A ALG+++GE+++E VL
Sbjct: 393 LAINQRQAAALTRAKISLEQCTDTISNKLPLDFWTIDLRGAIQALGEVTGEEVTESVLDR 452
Query: 556 IFGKFCIGK 564
IF +FCIGK
Sbjct: 453 IFSRFCIGK 461
>gi|390438142|ref|ZP_10226636.1| tRNA modification GTPase mnmE [Microcystis sp. T1-4]
gi|389838445|emb|CCI30760.1| tRNA modification GTPase mnmE [Microcystis sp. T1-4]
Length = 457
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 233/477 (48%), Positives = 311/477 (65%), Gaps = 26/477 (5%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
T TIAAI T+I G++GIVRLSG AV I R+F ++ W SH +
Sbjct: 4 TGDTIAAIATAIVPEQGSIGIVRLSGSQAVAIARRLFHTRNRQ--------PWE--SHRL 53
Query: 151 EYGVVLDRHGN---VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
YG + RH ++DE L + MLAPRS+TREDVVE CHG + +++VL+ CLE GA
Sbjct: 54 LYGYI--RHPQSQAIIDEALLLLMLAPRSFTREDVVEFHCHGGIMPVQQVLQLCLENGAR 111
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
LAQ GEF+LRAFLNGR+DL+QAE+V L+ A+S AA ALAG+QG + + +RA C+
Sbjct: 112 LAQAGEFSLRAFLNGRIDLTQAESVVDLVGARSPQAAQFALAGLQGKLAQPIRHLRATCL 171
Query: 268 ELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
++L EIEAR+DF++++PPL+ V+ I + V L TA +LL+SGL++AIVGRP
Sbjct: 172 DILAEIEARIDFEEDLPPLDHEAVLHSIEQVFCQVNLILATAERGELLRSGLKVAIVGRP 231
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLNAWS+S+RAIVT++ GTTRD++E+ + V G+PV +LDTAGIR D VE+IG
Sbjct: 232 NVGKSSLLNAWSRSDRAIVTDLPGTTRDIVESQLVVAGIPVQVLDTAGIRSASDRVEQIG 291
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS A AD++++TVSA GWT ED E+ + + +ILVINKID A
Sbjct: 292 VERSRQTARSADLVLLTVSAESGWTEEDEEIYRSVSDRR--------LILVINKIDLAHP 343
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ + V A QGI+DLE I+ V +I A A+NQRQ L
Sbjct: 344 ETVIYPA---EIERVVKLSAAQNQGIEDLEKTIINAVQNQEIQAANLDLAINQRQAAALT 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
R K AL ++K +I+E LP DFW+IDLR A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 401 RAKIALQQVKKTIDENLPFDFWSIDLRTAIQALGEITGEEVTESVLDRIFSRFCIGK 457
>gi|425472412|ref|ZP_18851260.1| tRNA modification GTPase mnmE [Microcystis aeruginosa PCC 9701]
gi|389881516|emb|CCI37939.1| tRNA modification GTPase mnmE [Microcystis aeruginosa PCC 9701]
Length = 457
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 229/475 (48%), Positives = 311/475 (65%), Gaps = 22/475 (4%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
T TIAAI T+I G++GIVRLSG AV I R+F ++ W SH +
Sbjct: 4 TGDTIAAIATAIVPEQGSIGIVRLSGSQAVAIARRLFHTRNRQP--------WE--SHRL 53
Query: 151 EYGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG + H ++DE L + MLAPRS+TREDVVE CHG + +++VL+ CLE GA LA
Sbjct: 54 LYGYIRHPHSQAIIDEALLLLMLAPRSFTREDVVEFHCHGGIMPVQQVLQLCLENGARLA 113
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
Q GEF+LRAFLNGR+DL+QAE+V L+ A+S AA ALAG+QG + + +RA C+++
Sbjct: 114 QAGEFSLRAFLNGRIDLTQAESVVDLVGARSPQAAQFALAGLQGKLAQPIRHLRATCLDI 173
Query: 270 LTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
L EIEAR+DF++++PPL+ V+ I + V L TA +LL+SGL++AIVGRPNV
Sbjct: 174 LAEIEARIDFEEDLPPLDHEAVLHSIEQVFCQVNLILATAERGELLRSGLKVAIVGRPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNAWS+S+RAIVT++ GTTRD++E+ + V G+PV +LDTAGIR D VE+IGVE
Sbjct: 234 GKSSLLNAWSRSDRAIVTDLPGTTRDIVESQLVVAGIPVQVLDTAGIRSASDRVEQIGVE 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS A AD++++TVSA GWT ED E+ + + +ILVINKID A +
Sbjct: 294 RSRQTARSADLVLLTVSAESGWTQEDEEIYRSVSDRR--------LILVINKIDLAHPET 345
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+ V A QGI+DLE I+ V ++ A A+NQRQ L R
Sbjct: 346 VIYPA---EIERVVKLSAAQNQGIEDLEKTIINAVQNQELQAANLDLAINQRQAAALTRA 402
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K AL ++K++I++ LP DFW+IDLR A +LG+I+GE+++E VL IF +FCIGK
Sbjct: 403 KIALQQVKNTIDQNLPFDFWSIDLRTAIQSLGEITGEEVTESVLDRIFSRFCIGK 457
>gi|302842518|ref|XP_002952802.1| hypothetical protein VOLCADRAFT_82002 [Volvox carteri f.
nagariensis]
gi|300261842|gb|EFJ46052.1| hypothetical protein VOLCADRAFT_82002 [Volvox carteri f.
nagariensis]
Length = 596
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 236/471 (50%), Positives = 338/471 (71%), Gaps = 14/471 (2%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAIV+ G G+V I+R+SG AV I RVF+P + + W+P SH V YG
Sbjct: 140 TIAAIVS--GMAHGSVAIIRVSGTDAVSIASRVFRPGGRFRF------GWQPKSHRVYYG 191
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+D +++DEVL + ML+PRSYT EDVVE+ CHG VC RVLRA +EAGA LA+PGE
Sbjct: 192 TAVDGDESLLDEVLLLAMLSPRSYTAEDVVEVHCHGGGVCGGRVLRALIEAGARLAKPGE 251
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FTLRAFLNGRLDL+QAE V +L++A++ AAAD+ALAG++GG +V+ +R++C+++L E+
Sbjct: 252 FTLRAFLNGRLDLAQAEAVSELLTARTPAAADSALAGLRGGLGGVVSELRSQCLDVLAEL 311
Query: 274 EARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSS 333
EARLDFD+++ +++ + K+ + +E AL TA LL++GLQ+AIVGRPNVGKSS
Sbjct: 312 EARLDFDEDLTQIDIPELKRKVERIQAGIERALRTARAGTLLRNGLQVAIVGRPNVGKSS 371
Query: 334 LLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEA 393
LLNAW+ S+RAIVTE+AGTTRDV+EA++++ GVPVTLLDTAGIR+++D+VE+IGVERS+A
Sbjct: 372 LLNAWTNSDRAIVTEVAGTTRDVLEATLSIGGVPVTLLDTAGIRQSNDVVERIGVERSQA 431
Query: 394 VALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWN 453
A AD++IM V GWT DS++ + + + + L + + P +
Sbjct: 432 AAAAADIVIMVVDGAAGWTDADSDIFKALWGDGPGSSTCKVGRLSLQQQLLLPLVAR--- 488
Query: 454 KVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEAL 513
++F V T A +G+++L+ A++++ G ++ +GG W++N+RQ E L+R+ EAL
Sbjct: 489 ---DTFAAVVRTSASQRRGLEELDAALLQLAGAPKLASGGVSWSINERQGEALVRSHEAL 545
Query: 514 VRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+RL SI +LPLDFWTIDLR A LALG++SG++++EEVL +F +FCIGK
Sbjct: 546 MRLTESIAADLPLDFWTIDLRSALLALGEVSGDEVAEEVLDTVFSRFCIGK 596
>gi|282895353|ref|ZP_06303554.1| tRNA modification GTPase TrmE [Raphidiopsis brookii D9]
gi|281199604|gb|EFA74465.1| tRNA modification GTPase TrmE [Raphidiopsis brookii D9]
Length = 460
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 228/480 (47%), Positives = 319/480 (66%), Gaps = 38/480 (7%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++ G+VGIVR+SG A+ I +F + G W SH + YG
Sbjct: 10 TIAAIATAVVPQQGSVGIVRVSGDQAMAIAHTLFY--------TPGKQIWE--SHRILYG 59
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
V VVDE L + M APRS+TREDVVE CHG + +++VL+ CLE GA LAQPG
Sbjct: 60 FVRQPETKQVVDEALLLIMKAPRSFTREDVVEFHCHGGIIPVQQVLQLCLENGARLAQPG 119
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EF+LRAFLNGRLDL+QAE++ L+ AKS AA ALAG++G + + +R +C+++L E
Sbjct: 120 EFSLRAFLNGRLDLTQAESIADLVGAKSPQAAQTALAGLRGKLAQPIRYLRNQCLDILAE 179
Query: 273 IEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
IEAR+DF++++PPL+ ++ +I+ +S +V L T +LL+SGL++AIVGRPNVGKS
Sbjct: 180 IEARIDFEEDLPPLDQGKIITQINQISVEVSRLLSTKEKGELLRSGLKVAIVGRPNVGKS 239
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNAWS+ +RAIVT++ GTTRD++E+ + V G+P+ +LDTAGIRET D VEKIGVERS
Sbjct: 240 SLLNAWSQCDRAIVTDLPGTTRDIVESQLVVGGIPIQVLDTAGIRETVDQVEKIGVERSR 299
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID--------C 444
A AD++++T+ A GW S D E+ +++ P+ILVINKID C
Sbjct: 300 QAANSADLVLLTIDAKAGWQSGDEEIYQQVKHR--------PLILVINKIDLVEDLGGIC 351
Query: 445 APSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCE 504
+P + V T A +GI+DLE AI+++V +I AG A+NQRQ
Sbjct: 352 SP-----------TMEKAVKTAAGQNRGIEDLEQAILEVVQTQKIVAGDLDLAINQRQAA 400
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L++ + LV+++ +I ++LPLDFWTIDLR A ALG+I+GE+++E +L IF +FCIGK
Sbjct: 401 ALIKAQIDLVQVQKTIVDQLPLDFWTIDLRGAIYALGEITGEEVTESLLDRIFSRFCIGK 460
>gi|428775491|ref|YP_007167278.1| tRNA modification GTPase trmE [Halothece sp. PCC 7418]
gi|428689770|gb|AFZ43064.1| tRNA modification GTPase trmE [Halothece sp. PCC 7418]
Length = 443
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 221/461 (47%), Positives = 311/461 (67%), Gaps = 26/461 (5%)
Query: 107 GAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRH---GNVV 163
G+VGIVRLSG A+ I +F+ + G +W SH + YG V RH VV
Sbjct: 6 GSVGIVRLSGEQALSIAKTLFQ--------APGKQAW--DSHQILYGYV--RHPETEKVV 53
Query: 164 DEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGR 223
DE L + M +PRSYTREDVVE CHG + +++VL+ CLE GA LAQ GEFTLRAFLNGR
Sbjct: 54 DEALLLIMKSPRSYTREDVVEFHCHGGMIPVQQVLQLCLEQGARLAQAGEFTLRAFLNGR 113
Query: 224 LDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEM 283
+DL+QAE++ +L+ AKS A + ALAG+QG + + +R+ C+++L E+EAR+DF DE+
Sbjct: 114 IDLTQAESIAELVGAKSPQAGEMALAGLQGKLAQPIRDLRSTCLDILAEVEARVDFADEL 173
Query: 284 PPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSER 343
PPL + ++ + + VE L TA+ +LL++G+++AIVGRPNVGKSSLLNAWS+S+R
Sbjct: 174 PPLPEEEIQQQVKEVLEKVEYFLATADQGELLRTGVKVAIVGRPNVGKSSLLNAWSRSDR 233
Query: 344 AIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIM 403
AIVT++ GTTRDV+E+++ V G+PV +LDTAGIRET+D VEKIGV RS A AD+I+
Sbjct: 234 AIVTDLPGTTRDVVESNLVVSGIPVEVLDTAGIRETEDQVEKIGVARSRNAAQKADLILH 293
Query: 404 TVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHV 463
T+ A GWT ED + +++ P+ILVINK D P+++ ++ + + V
Sbjct: 294 TIDAQLGWTKEDDLIYEQVKHR--------PLILVINKTDLTPASTVQYPE---TIQVTV 342
Query: 464 FTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEE 523
T QGI++LE AI+ +V + A +A+NQRQ L R K +L + +I+++
Sbjct: 343 ATAVARSQGIENLERAILNLVQTGNLNAANSDFAINQRQAAALTRAKTSLQHVLETIDQQ 402
Query: 524 LPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
LP DFWTIDLR A ALG+I+GE+++E +L IF +FCIGK
Sbjct: 403 LPFDFWTIDLRSAIQALGEITGEEVTESMLDRIFSRFCIGK 443
>gi|425467921|ref|ZP_18847129.1| tRNA modification GTPase mnmE [Microcystis aeruginosa PCC 9809]
gi|389829122|emb|CCI29781.1| tRNA modification GTPase mnmE [Microcystis aeruginosa PCC 9809]
Length = 457
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 232/477 (48%), Positives = 313/477 (65%), Gaps = 26/477 (5%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
T TIAAI T+I G++GIVRLSG AV I R+F ++K W+ SH +
Sbjct: 4 TGDTIAAIATAIVPEQGSIGIVRLSGSEAVAIARRLFHSPNRQK--------WQ--SHRL 53
Query: 151 EYGVVLDRHGN---VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
YG + RH ++DE L + MLAPRS+TREDVVE CHG + +++VL+ CLE GA
Sbjct: 54 LYGYI--RHPQSQAIIDEALLLLMLAPRSFTREDVVEFHCHGGIMPVQQVLQLCLENGAR 111
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
LAQ GEF+LRAFLNGR+DL+QAE+V L+ A+S AA ALAG+QG + + +RA C+
Sbjct: 112 LAQAGEFSLRAFLNGRIDLTQAESVVDLVGARSPQAAQFALAGLQGKLAQPIRHLRATCL 171
Query: 268 ELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
++L EIEAR+DF++++PPL+ V+ I + V L TA +LL+SGL++AIVGRP
Sbjct: 172 DILAEIEARIDFEEDLPPLDHAAVLHSIEQVFCQVNLILATAERGELLRSGLKVAIVGRP 231
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLNAWS+S+RAIVT++ GTTRD++E+ + V G+PV +LDTAGIR D VE+IG
Sbjct: 232 NVGKSSLLNAWSRSDRAIVTDLPGTTRDIVESQLVVAGIPVQVLDTAGIRSASDRVEQIG 291
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS A AD++++TVSA GWT ED E+ + S +ILVINKID A
Sbjct: 292 VERSRQTARSADLVLLTVSAESGWTQEDEEIYRSV--------SDRQLILVINKIDLANP 343
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ + V A QGI+DLE I+ V ++ A A+NQRQ L
Sbjct: 344 ETVIYPA---EIERVVKLSAAQNQGIEDLEKTIINAVQNQELQAANLDLAINQRQAAALT 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
R K AL ++K +I++ LP DFW+IDLR A +LG+I+GE+++E VL IF +FCIGK
Sbjct: 401 RAKIALQQVKKTIDQNLPFDFWSIDLRTAIQSLGEITGEEVTESVLDRIFSRFCIGK 457
>gi|166367612|ref|YP_001659885.1| tRNA modification GTPase TrmE [Microcystis aeruginosa NIES-843]
gi|205415798|sp|B0JVV0.1|MNME_MICAN RecName: Full=tRNA modification GTPase MnmE
gi|166089985|dbj|BAG04693.1| thiophen and furan oxidation protein [Microcystis aeruginosa
NIES-843]
Length = 457
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 230/477 (48%), Positives = 314/477 (65%), Gaps = 26/477 (5%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
T TIAAI T+I G++GIVRLSG AV I R+F ++K W+ SH +
Sbjct: 4 TGDTIAAIATAIVPEQGSIGIVRLSGSEAVAIARRLFHSPNRQK--------WQ--SHRL 53
Query: 151 EYGVVLDRHGN---VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
YG + RH ++DE L + MLAPRS+TREDVVE CHG + +++VL+ CLE GA
Sbjct: 54 LYGYI--RHPQSQAIIDEALLLLMLAPRSFTREDVVEFHCHGGIMPVQQVLQLCLENGAR 111
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
LAQ GEF+LRAFLNGR+DL+QAE+V L+ A+S AA ALAG+QG + + +RA C+
Sbjct: 112 LAQAGEFSLRAFLNGRIDLTQAESVVDLVGARSPQAAQFALAGLQGKLAQPIRHLRATCL 171
Query: 268 ELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
++L EIEAR+DF++++PPL+ V+ I + V L TA +LL+SGL++AIVGRP
Sbjct: 172 DILAEIEARIDFEEDLPPLDHAAVLHSIEQVFCQVNLILATAERGELLRSGLKVAIVGRP 231
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLNAWS+S+RAIVT++ GTTRD++E+ + V G+PV +LDTAGIR D VE+IG
Sbjct: 232 NVGKSSLLNAWSRSDRAIVTDLPGTTRDIVESQLVVAGIPVQVLDTAGIRSASDRVEQIG 291
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS A AD++++TVSA GWT ED E+ + + +ILVINKID A
Sbjct: 292 VERSRQTARSADLVLLTVSAESGWTQEDEEIYRSVSDRR--------LILVINKIDLANP 343
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ + V A QGI+DLE +++ V ++ A A+NQRQ L
Sbjct: 344 ETVIYPA---EIKRVVKLSAAQNQGIEDLEKSLINAVQNQELQAANLDLAINQRQAAALT 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
R K AL ++K +I++ LP DFW+IDLR A +LG+I+GE+++E VL IF +FCIGK
Sbjct: 401 RAKIALQQVKKTIDQNLPFDFWSIDLRTAIQSLGEITGEEVTESVLDRIFSRFCIGK 457
>gi|308800228|ref|XP_003074895.1| COG0486: Predicted GTPase (ISS) [Ostreococcus tauri]
gi|116061445|emb|CAL52163.1| COG0486: Predicted GTPase (ISS) [Ostreococcus tauri]
Length = 508
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 237/478 (49%), Positives = 316/478 (66%), Gaps = 12/478 (2%)
Query: 90 GTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
G TI + T+ G G V IVRLSGP A+ I VF + K G +W SH
Sbjct: 40 GDADTIVGVATATAGAVGGVAIVRLSGPNALTIASDVFAVGRGGK----GVETWE--SHR 93
Query: 150 VEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG V + G +DE +A+ +APRSYT EDVVEL CHG VC++R L C E GA A
Sbjct: 94 ATYGRVTEADGRAIDEAIAIAFIAPRSYTAEDVVELHCHGGAVCVQRTLMRCRELGARTA 153
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+ GEFTLRAFLNGRLDL+QAE V L+SA++ A AD+ALA ++GG ++ V+ R C++L
Sbjct: 154 RRGEFTLRAFLNGRLDLAQAEAVHALVSARTTAGADSALAAMRGGLTTPVSEARRTCVDL 213
Query: 270 LTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
L E+EARLDFDDEM PL++ + K + + L+TA LL++G+ +AI+GRPNV
Sbjct: 214 LAELEARLDFDDEMVPLDVEAIERKASEAREKIREVLQTAKRGALLETGVTVAILGRPNV 273
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIR-ETDDIVEKIGV 388
GKS LLNA ++SER+IVT GTTRDV+EAS+ V G+PV LLDTAGIR ETDD VE+IGV
Sbjct: 274 GKSRLLNALTRSERSIVTSREGTTRDVVEASMNVAGIPVVLLDTAGIRSETDDEVEQIGV 333
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELL-NRIQSNKKSTESSTPMILVINKIDCAPS 447
ERS A A GADV+ + V A GW SED ++ + I +N+++ ++ ILVINK D A +
Sbjct: 334 ERSRAAAAGADVVALVVDASRGWVSEDYDIWKSEIAANERARGAA---ILVINKTDVADA 390
Query: 448 A-SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ V +SF+D V A TG + +LE A+ + + + WAVNQRQ E L
Sbjct: 391 ENATPPADVVDSFSDVVRISAATGDNLVELERALARCITGDVVNTESESWAVNQRQAEAL 450
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L RL+ +I+ ++PLDFWTIDLR+AA ALG ++GED++E+VL IF +FCIGK
Sbjct: 451 HVALDSLDRLRDTIDADMPLDFWTIDLREAAFALGTVTGEDVTEDVLDTIFERFCIGK 508
>gi|440755696|ref|ZP_20934898.1| tRNA modification GTPase TrmE [Microcystis aeruginosa TAIHU98]
gi|440175902|gb|ELP55271.1| tRNA modification GTPase TrmE [Microcystis aeruginosa TAIHU98]
Length = 457
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 232/477 (48%), Positives = 312/477 (65%), Gaps = 26/477 (5%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
T TIAAI T+I G++GIVRLSG AV I R+F ++ W SH +
Sbjct: 4 TGDTIAAIATAIVPEQGSIGIVRLSGSEAVAIARRLFHTRNRQP--------WE--SHRL 53
Query: 151 EYGVVLDRHGN---VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
YG + RH ++DE L + MLAPRS+TREDVVE CHG + +++VL+ CLE GA
Sbjct: 54 LYGYI--RHPQSQAIIDEALLLLMLAPRSFTREDVVEFHCHGGIIPVQQVLQLCLENGAR 111
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
LAQ GEF+LRAFLNGR+DL+QAE+V L+ A+S AA ALAG+QG + + +RA C+
Sbjct: 112 LAQAGEFSLRAFLNGRIDLTQAESVVDLVGARSPQAAQFALAGLQGKLAQPIRHLRATCL 171
Query: 268 ELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
++L EIEAR+DF++++PPL+ V+ I + V L TA +LL+SGL++AIVGRP
Sbjct: 172 DILAEIEARIDFEEDLPPLDCEAVLRSIEQVFCQVNLILATAERGELLRSGLKVAIVGRP 231
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLNAWS+S+RAIVT++ GTTRD++E+ + V G+PV +LDTAGIR D VE+IG
Sbjct: 232 NVGKSSLLNAWSRSDRAIVTDLPGTTRDIVESQLVVAGIPVQVLDTAGIRSASDRVEQIG 291
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS A AD++++TVSA GWT ED E+ + + +ILVINKID A
Sbjct: 292 VERSRQTARSADLVLLTVSAESGWTEEDEEIYRSVSDRR--------LILVINKIDLAHP 343
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ + V A QGI++LE I+ V +I A A+NQRQ L
Sbjct: 344 ETVIYPA---EIERVVKLSAAQNQGIEELEKTIINAVQNQEIQAANLDLAINQRQAAALT 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
R K AL ++K++I+E LP DFW+IDLR A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 401 RAKIALQQVKNTIDENLPFDFWSIDLRTAIQALGEITGEEVTESVLDRIFSRFCIGK 457
>gi|443657325|ref|ZP_21131888.1| tRNA modification GTPase TrmE [Microcystis aeruginosa DIANCHI905]
gi|159029809|emb|CAO90863.1| trmE [Microcystis aeruginosa PCC 7806]
gi|443333192|gb|ELS47762.1| tRNA modification GTPase TrmE [Microcystis aeruginosa DIANCHI905]
Length = 457
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 231/477 (48%), Positives = 313/477 (65%), Gaps = 26/477 (5%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
T TIAAI T+I G++GIVRLSG AV I R+F ++K W+ SH +
Sbjct: 4 TGDTIAAIATAIVPEQGSIGIVRLSGSEAVAIARRLFHTRNRQK--------WQ--SHRL 53
Query: 151 EYGVVLDRHGN---VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
YG + RH ++DE L + MLAPRS+TREDVVE CHG + +++VL+ CLE GA
Sbjct: 54 LYGYI--RHPQSQAIIDEALLLLMLAPRSFTREDVVEFHCHGGIMPVQQVLQLCLENGAR 111
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
LAQ GEF+LRAFLNGR+DL+QAE+V L+ A+S AA ALAG+QG + + +RA C+
Sbjct: 112 LAQAGEFSLRAFLNGRIDLTQAESVVDLVGARSPQAAQFALAGLQGKLAQPIRHLRATCL 171
Query: 268 ELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
++L EIEAR+DF++++P L+ V+ I + V L TA +LL+SGL++AIVGRP
Sbjct: 172 DILAEIEARIDFEEDLPLLDHEAVLSSIEQVFCQVNLILATAERGELLRSGLKVAIVGRP 231
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLNAWS+S+RAIVT++ GTTRD++E+ + V G+PV +LDTAGIR D VE+IG
Sbjct: 232 NVGKSSLLNAWSRSDRAIVTDLPGTTRDIVESQLVVAGIPVQVLDTAGIRSASDRVEQIG 291
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS A AD++++TVSA GWT ED E+ + + +ILVINKID
Sbjct: 292 VERSRQTAQSADLVLLTVSAESGWTEEDEEIYRSVSDRR--------LILVINKIDLVNP 343
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ + V AV QGI+DLE I+ V ++ A A+NQRQ L
Sbjct: 344 ETVIYPA---EIERVVKISAVQNQGIEDLEKTIINAVQNQELQAANLDLAINQRQAAALT 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
R K AL ++K +I+++LP DFW+IDLR A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 401 RAKIALEQVKKTIDQDLPFDFWSIDLRTAIQALGEITGEEVTESVLDRIFSRFCIGK 457
>gi|22298504|ref|NP_681751.1| tRNA modification GTPase TrmE [Thermosynechococcus elongatus BP-1]
gi|223635295|sp|P0C8N9.1|MNME_SYNEL RecName: Full=tRNA modification GTPase MnmE
gi|223635296|sp|P0C8P1.1|MNME_THEEB RecName: Full=tRNA modification GTPase MnmE
gi|5420315|emb|CAB46651.1| possible thiophene and furan oxidation protein [Synechococcus
elongatus]
gi|22294684|dbj|BAC08513.1| thiophen and furan oxidation protein [Thermosynechococcus elongatus
BP-1]
Length = 469
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 225/474 (47%), Positives = 319/474 (67%), Gaps = 14/474 (2%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+I G++GIVRLSG AV I +F+ + G W SH + YG
Sbjct: 7 TIAAIATAIVPQQGSIGIVRLSGAKAVAIAQSLFE--------APGKQPWE--SHRILYG 56
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
V D + VDE L + MLAPRSYTREDVVE CHG + ++RVL+ C+ AGA LA PG
Sbjct: 57 YVRDPQTKERVDEALLLLMLAPRSYTREDVVEFHCHGGLIPVQRVLQLCVAAGARLADPG 116
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFTLRAFLNGRLDL+QAE+V +L++A+S AA ALAG+ G + + +R C+ LL E
Sbjct: 117 EFTLRAFLNGRLDLTQAESVAELVAAQSTTAAQIALAGLTGKLARPLQQIRQTCLSLLAE 176
Query: 273 IEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
IEARLDF DE+PPL+ + ++I + VE L TA L+++GL++AIVGRPNVGKS
Sbjct: 177 IEARLDFTDELPPLDPAAIAEQIRQLQHQVEAFLATAERGALIRTGLKVAIVGRPNVGKS 236
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNAWS+S+RAIVT++ GTTRD++E+ + V G+P+ +LDTAGIRETD++VE+IGV+RS
Sbjct: 237 SLLNAWSRSDRAIVTDLPGTTRDIVESQLVVGGIPIQVLDTAGIRETDNLVEQIGVQRSR 296
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
AL AD+I++ + A GWT+ D + +++Q ++ ++ +++V+NK D S + E
Sbjct: 297 QAALSADLILLVIDASQGWTAADQAIYDQLQLKQRRQQAPQSVLVVLNKADLL-SETTEV 355
Query: 453 NKVGNSFN--DHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+ V A++ +GI+ LE AI+ +V + A +A+NQRQ L +
Sbjct: 356 KDIPLPIAPIPTVLLSALSQRGIEQLEDAILHLVQGQGVSAANLDFAINQRQAGLLEQVH 415
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L + ++I+ +LPLDFWTIDL AA ALG ++GE+++E VL+ IF +FCIGK
Sbjct: 416 QSLNHVLAAIDAQLPLDFWTIDLHAAARALGTLTGEEVTESVLTEIFSRFCIGK 469
>gi|428313065|ref|YP_007124042.1| tRNA modification GTPase trmE [Microcoleus sp. PCC 7113]
gi|428254677|gb|AFZ20636.1| tRNA modification GTPase trmE [Microcoleus sp. PCC 7113]
Length = 477
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 239/484 (49%), Positives = 328/484 (67%), Gaps = 33/484 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++ G+VGIVR+SG A+ I +F +SG W +H + YG
Sbjct: 14 TIAAIATAVVPQQGSVGIVRMSGKQAIAIARILFH--------ASGRQPWE--THRILYG 63
Query: 154 VVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
+ RH VVDE L + M APRSYTREDVVE CHG + +++VL+ CLE GA LAQ
Sbjct: 64 YL--RHPQTEQVVDEALLLIMQAPRSYTREDVVEFHCHGGIMPVQQVLQLCLEQGARLAQ 121
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFTLRAFLNGRLDL+QAE++ L+ ++S AAA AALAG+QG ++ + +R+ C+++L
Sbjct: 122 PGEFTLRAFLNGRLDLTQAESIADLVGSRSPAAAQAALAGLQGKLAAPIRQLRSTCLDIL 181
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
EIEAR+DF+D++PPL+ V+ +I + +V + LETA+ +LL++GL++AIVGRPNVG
Sbjct: 182 AEIEARIDFEDDLPPLDEAAVVAQIEQVLTEVTHILETADRGELLRAGLKVAIVGRPNVG 241
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIRET D VEKIGVER
Sbjct: 242 KSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETADQVEKIGVER 301
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S A AD++++T+ A GWT D E+ +++ P+ILVINKID
Sbjct: 302 SHRAAQAADLVLLTIDASTGWTEADQEIYEQVKHR--------PVILVINKIDLVEVEER 353
Query: 451 EWNK----VGN----SFN--DHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQ 500
+ + VG +FN +FT A QGI++LETAI++ + + A A+NQ
Sbjct: 354 KIMQSQIPVGMEAQPTFNPKSKIFTAASLNQGIEELETAILEAIHTGNLKAANLDIAINQ 413
Query: 501 RQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKF 560
RQ L K +L +++ +I ++LPLDFWTIDLR A ALG+I+GED++E VL IF +F
Sbjct: 414 RQAAALTHAKTSLQQVQETIAQQLPLDFWTIDLRGAIQALGEITGEDVTESVLDRIFSRF 473
Query: 561 CIGK 564
CIGK
Sbjct: 474 CIGK 477
>gi|409993429|ref|ZP_11276570.1| tRNA modification GTPase TrmE [Arthrospira platensis str. Paraca]
gi|409935698|gb|EKN77221.1| tRNA modification GTPase TrmE [Arthrospira platensis str. Paraca]
Length = 469
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 228/478 (47%), Positives = 329/478 (68%), Gaps = 25/478 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+I G++GIVR+SG AV I +FK + G+ W +SH + YG
Sbjct: 10 TIAAIATAIVPQQGSIGIVRMSGAEAVAIAKTLFK--------APGNQPW--SSHRILYG 59
Query: 154 VVLDRH-GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+ H +VDE L + MLAPRSYTREDVVE CHG + +++VL+ CL+AGA LA PG
Sbjct: 60 YIHHPHTQQLVDEALLLLMLAPRSYTREDVVEFHCHGGIIPVQQVLQLCLQAGARLATPG 119
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFTLRAFLNGRLDL+QAE+V +L+ A+S AA AALAG++G + + +R+ C+++L E
Sbjct: 120 EFTLRAFLNGRLDLTQAESVAELVGAQSPQAASAALAGLRGKLADPIHHLRSLCLDILAE 179
Query: 273 IEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
IEAR+DF++++PPLN + ++ ++ + Q + + L+TA+ +LL++GL++AIVGRPNVGKS
Sbjct: 180 IEARVDFEEDLPPLNESEIIHQLQEVLQQLTDILDTADRGELLRTGLKVAIVGRPNVGKS 239
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIR++DD VE+IGVERS+
Sbjct: 240 SLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRKSDDKVEQIGVERSQ 299
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE- 451
A AD+++ T+ GWT ++E+ ++++ P+I+V+NK D SA E
Sbjct: 300 IAAQSADLVLFTLDCEKGWTEGENEIYQQVKNR--------PIIVVMNKSDRLSSAQLEN 351
Query: 452 -----WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
NK+ + + T A QGI DLET+I+ V + + +A+NQRQ L
Sbjct: 352 LRQAIINKLDIKPSLIIATAATLNQGITDLETSILNAVHTENLQSANLEFAINQRQAAAL 411
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
R K AL +++++I + LP DFWTIDLR A ALG+++GE+++E VL IF +FCIGK
Sbjct: 412 TRAKIALEQVENTIGDRLPFDFWTIDLRGAIHALGEVTGEEVTESVLDRIFSRFCIGK 469
>gi|427418398|ref|ZP_18908581.1| tRNA modification GTPase trmE [Leptolyngbya sp. PCC 7375]
gi|425761111|gb|EKV01964.1| tRNA modification GTPase trmE [Leptolyngbya sp. PCC 7375]
Length = 459
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 228/483 (47%), Positives = 312/483 (64%), Gaps = 26/483 (5%)
Query: 83 GESEEKAGTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGS 142
GE E TIAAI T+I G+VGIVRLSG AV I +VF +
Sbjct: 2 GEPRETIVQGETIAAIATAIVPQQGSVGIVRLSGSTAVPIAQQVFH----------STAP 51
Query: 143 WRPTSHVVEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRAC 201
W SH + YG + +DE L + M +PRSYTREDVVE CHG + +++VL+ C
Sbjct: 52 WE--SHRILYGYIAHPETRQTIDEALLLLMKSPRSYTREDVVEFHCHGGIMAVQQVLQLC 109
Query: 202 LEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTS 261
+ GA LA+PGEFTLRAFLNGRLDL+QAE + L+ A+S AA ALAGIQG + ++
Sbjct: 110 IAQGARLAEPGEFTLRAFLNGRLDLTQAEGIADLVGAQSPQAAQVALAGIQGKLTQVIRQ 169
Query: 262 VRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQI 321
R++C+++L E+EAR+DF D++PPL+ + V +++ + +V L TA+ +LL++GL++
Sbjct: 170 CRSRCLDVLAEVEARIDFADDLPPLDEDHVRNQVAVLLAEVSKILSTAHQGELLRTGLKV 229
Query: 322 AIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDD 381
AIVG+PNVGKSSLLNAWS+ +RAIVT + GTTRDV+E+ + V G+PV +LDTAGIR+ D
Sbjct: 230 AIVGQPNVGKSSLLNAWSRCDRAIVTALPGTTRDVVESQLVVGGIPVQVLDTAGIRDATD 289
Query: 382 IVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINK 441
VE++G+ERS+A A AD++++TV GWT ++ L I+ P ILVINK
Sbjct: 290 QVEQLGIERSQAAAKNADLVLLTVDGTVGWTDAEAALYGDIRHK--------PHILVINK 341
Query: 442 IDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQR 501
+D P S V T A GQGI+DLE AI+ IV + A A+NQR
Sbjct: 342 VDLGPPVSPP-----VVDVPVVHTAAAQGQGIEDLENAILAIVQAGNVSAANMDLAINQR 396
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
Q L R AL +++++IE LPLDFWTIDLRDA ALG+++GE+++E +L IF +FC
Sbjct: 397 QAAALTRAHSALKQVQATIEAVLPLDFWTIDLRDAIRALGEVTGEEMTESMLDEIFSRFC 456
Query: 562 IGK 564
IGK
Sbjct: 457 IGK 459
>gi|158334891|ref|YP_001516063.1| tRNA modification GTPase TrmE [Acaryochloris marina MBIC11017]
gi|205829048|sp|B0CBB0.1|MNME_ACAM1 RecName: Full=tRNA modification GTPase MnmE
gi|158305132|gb|ABW26749.1| tRNA modification GTPase TrmE [Acaryochloris marina MBIC11017]
Length = 455
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 225/459 (49%), Positives = 307/459 (66%), Gaps = 22/459 (4%)
Query: 107 GAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLD-RHGNVVDE 165
G++GIVRLSG AV I ++F+ + G W SH V YG + ++DE
Sbjct: 18 GSIGIVRLSGVEAVSIAKQLFQ--------TPGKQQWE--SHRVLYGYIQQPLTQQIIDE 67
Query: 166 VLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLD 225
L + MLAPRSYTREDVVE CHG + +++VL ACL+AGA LAQPGEFTLRAFLNGRLD
Sbjct: 68 GLLLLMLAPRSYTREDVVEFHCHGGMIAVQQVLEACLQAGAELAQPGEFTLRAFLNGRLD 127
Query: 226 LSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPP 285
L+QAE V L+ A+S AA AALAG+QG +S + +R +C++ L E+EAR+DF+D++PP
Sbjct: 128 LTQAEGVADLVGARSPQAAQAALAGVQGKLASPIRELRQRCLDTLAEVEARVDFEDDLPP 187
Query: 286 LNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAI 345
L+ V ++ + ++ L TA+ +LL++GL +AI+GRPNVGKSSLLNAW + +RAI
Sbjct: 188 LDEAGVQAELQDIHATLQAILATADQGELLRNGLTVAIIGRPNVGKSSLLNAWCRCDRAI 247
Query: 346 VTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTV 405
VT++ GTTRDV+E+ + V G+P+ +LDTAGIRET+D VE+IGV RS A AD++++T+
Sbjct: 248 VTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRETEDQVEQIGVTRSHQAAQSADLVLLTI 307
Query: 406 SAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFT 465
A GWTS+D +L Q P+IL++NK+D P E + V T
Sbjct: 308 DASVGWTSDDQQLYQAFQ--------DLPLILIVNKVDLVP---QEQVVYPEAIAQVVST 356
Query: 466 CAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELP 525
A QGI +LETAI++ V + A WA+NQRQ L + + AL ++ +I ++LP
Sbjct: 357 IAAQNQGISELETAILETVQTQSLKAANLDWAINQRQAAALQKAQAALEHVQGAIADQLP 416
Query: 526 LDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
LDFWTIDLR A ALG+I+GEDI+E VL IF +FCIGK
Sbjct: 417 LDFWTIDLRGAIQALGEITGEDITESVLDRIFSRFCIGK 455
>gi|291571683|dbj|BAI93955.1| tRNA modification GTPase [Arthrospira platensis NIES-39]
Length = 469
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 227/478 (47%), Positives = 328/478 (68%), Gaps = 25/478 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+I G++GIVR+SG AV I +FK + G+ W +SH + YG
Sbjct: 10 TIAAIATAIVPQQGSIGIVRMSGAEAVAIAKTLFK--------APGNQPW--SSHRILYG 59
Query: 154 VVLDRH-GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+ H +VDE L + MLAPRSYTREDVVE CHG + +++VL+ CL+AGA LA PG
Sbjct: 60 YIHHPHTQQLVDEALLLLMLAPRSYTREDVVEFHCHGGIIPVQQVLQLCLQAGARLATPG 119
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFTLRAFLNGRLDL+QAE+V +L+ A+S AA AALAG++G + + +R+ C+++L E
Sbjct: 120 EFTLRAFLNGRLDLTQAESVAELVGAQSPQAASAALAGLRGKLADPIHHLRSLCLDILAE 179
Query: 273 IEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
IEAR+DF++++PPLN + ++ ++ + Q + + L+TA+ +LL++GL++AIVGRPNVGKS
Sbjct: 180 IEARVDFEEDLPPLNESEIIHQLQEVLQQLTDILDTADRGELLRTGLKVAIVGRPNVGKS 239
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIR++DD VE+IGVERS+
Sbjct: 240 SLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRKSDDKVEQIGVERSQ 299
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS--N 450
A AD+++ T+ GWT ++E+ ++++ P+I+V+NK D SA N
Sbjct: 300 IAAQSADLVLFTLDCEKGWTEGENEIYQQVKNR--------PIIVVMNKSDRLSSAQLEN 351
Query: 451 EWNKVGNSFNDH----VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ N + + T A QGI DLET+I+ V + + +A+NQRQ L
Sbjct: 352 LRQAIINQLDIKPSLIIATAATLNQGITDLETSILNAVHTENLQSANLEFAINQRQAAAL 411
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
R K AL +++++I + LP DFWTIDLR A ALG+++GE+++E VL IF +FCIGK
Sbjct: 412 TRAKIALEQVENTIGDRLPFDFWTIDLRGAIHALGEVTGEEVTESVLDRIFSRFCIGK 469
>gi|428210720|ref|YP_007083864.1| tRNA modification GTPase trmE [Oscillatoria acuminata PCC 6304]
gi|427999101|gb|AFY79944.1| tRNA modification GTPase trmE [Oscillatoria acuminata PCC 6304]
Length = 460
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 234/474 (49%), Positives = 325/474 (68%), Gaps = 25/474 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+I G++GIVRLSG A+ I +F + GS W +H + YG
Sbjct: 9 TIAAIATAIVPQQGSIGIVRLSGSQALAIAQTLFH--------APGSQPWE--THRILYG 58
Query: 154 VVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
+ RH +VDE L + M +PRS+TREDVVE CHG + +++VL+ CLE GA LAQ
Sbjct: 59 TI--RHPKTQQIVDEALLLLMKSPRSFTREDVVEFHCHGGIIPVQQVLQLCLELGARLAQ 116
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFTLRAFLNGRLDL+QAE+V L+ A+S AA+ AALAG+QG + + +R +C+++L
Sbjct: 117 PGEFTLRAFLNGRLDLTQAESVADLVGAQSPAASQAALAGLQGKLAHPIRQLRTQCLDIL 176
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
EIEAR+DF++++PPLN ++ I ++ Q+VE L TAN +LL+ GL++AIVGRPNVG
Sbjct: 177 AEIEARIDFEEDLPPLNEPEIIQSIQSIIQEVEKILGTANQGELLRMGLKVAIVGRPNVG 236
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNAWS+S+RAIVT + GTTRDV+E+ + V G+PV +LDTAGIR T+D VEKIGVER
Sbjct: 237 KSSLLNAWSRSDRAIVTNLPGTTRDVVESQLVVQGIPVQVLDTAGIRATEDTVEKIGVER 296
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S A AD++++T+ A GWT++D E+ ++ N K P++++ NKID
Sbjct: 297 SRLAAQSADLVLLTLDAQAGWTADDYEIYQQV--NHK------PIVVIFNKIDLVEQIPL 348
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
N ++ + V T A QGI+ LETAI+ V + A +A+NQRQ L R +
Sbjct: 349 LPNL--DNIRETVNTSAAHQQGIEALETAILNTVHAGNLQAENLDFAINQRQAAALTRAQ 406
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL +++++I+++LPLDFWTIDLR A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 407 TALEQVQTTIDQQLPLDFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 460
>gi|254414160|ref|ZP_05027927.1| tRNA modification GTPase TrmE [Coleofasciculus chthonoplastes PCC
7420]
gi|196178835|gb|EDX73832.1| tRNA modification GTPase TrmE [Coleofasciculus chthonoplastes PCC
7420]
Length = 460
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 234/475 (49%), Positives = 326/475 (68%), Gaps = 28/475 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++ G+VGIVR+SG A++I ++F + G W+ +H + YG
Sbjct: 10 TIAAIATAVVPQQGSVGIVRVSGENALEIARQLFH--------APGRQLWQ--THRILYG 59
Query: 154 VVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
V RH +VDE L + M +PRSYTREDVVE CHG + +++VL+ CLE GA LAQ
Sbjct: 60 YV--RHPQTQQIVDEALLLIMQSPRSYTREDVVEFHCHGGIMPVQQVLQLCLELGARLAQ 117
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFTLRAFLNGRLDL+QAE++ L+ ++S AAA AALAGIQG + + +RA C++ L
Sbjct: 118 PGEFTLRAFLNGRLDLTQAESIADLVGSRSPAAAQAALAGIQGKLAVPIRQLRATCLDSL 177
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
EIEAR+DF++++PPL+ ++ ++ + +++ L TA+ +LL++GL IAIVGRPNVG
Sbjct: 178 AEIEARIDFEEDLPPLDEAGIIAQLQQVLTNIKQILATADRGQLLRTGLNIAIVGRPNVG 237
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+P+ +LDTAGIRET D VEKIGVER
Sbjct: 238 KSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRETVDQVEKIGVER 297
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S A AD+I++ + A GW+S+D E+ +++ P+ILVINK D AP+ S
Sbjct: 298 SRRAAEAADLIVLVIEATAGWSSDDQEIYTQVKHR--------PLILVINKTDLAPADSV 349
Query: 451 EWNKVGNSFNDHVFTCAVT-GQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+ +S D V T AVT +GI+ LE I++ V + A A+NQRQ L +
Sbjct: 350 SYP---DSI-DRVITAAVTKNEGIEALEQGILEAVQTGTLHAADLDLAINQRQAAALTQA 405
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K AL +++ +I ++LPLDFWTIDLR A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 406 KIALEQVQETIAQQLPLDFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 460
>gi|428217530|ref|YP_007101995.1| tRNA modification GTPase trmE [Pseudanabaena sp. PCC 7367]
gi|427989312|gb|AFY69567.1| tRNA modification GTPase trmE [Pseudanabaena sp. PCC 7367]
Length = 489
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 219/503 (43%), Positives = 314/503 (62%), Gaps = 50/503 (9%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+I G+VGIVR+SG A+ I +F + G+ +W+ SH + YG
Sbjct: 5 TIAAIATAIVPQQGSVGIVRMSGEQALAIAKCIFS--------APGNQTWQ--SHRILYG 54
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
G +DE L + M APRSYTREDV+EL CHG + ++++L CLE GA LAQPG
Sbjct: 55 YAKSPDTGETIDECLLLIMQAPRSYTREDVIELHCHGGAIAVQQILNLCLEQGARLAQPG 114
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFTLRAFLNGR+DL+QAE + L+ + S AA AA+A ++G + + +RA+C+++L E
Sbjct: 115 EFTLRAFLNGRIDLTQAEGINNLVGSTSPQAAQAAIASLRGKLAQPLKDLRARCLDILAE 174
Query: 273 IEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
+EAR+DF+D++PPL+ V ++ ++Q + L+TA+ +LL SGL++AIVGRPNVGKS
Sbjct: 175 VEARIDFEDDLPPLDQAWVAQQLALIAQQAQQILDTADRGELLHSGLKVAIVGRPNVGKS 234
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLN WS+S+RAIVT++ GTTRDV+++ + V G+P+ +LDTAGIR+T+D+VE+IGVERS+
Sbjct: 235 SLLNMWSRSDRAIVTDLPGTTRDVVDSHLVVGGIPIKVLDTAGIRQTEDMVEQIGVERSQ 294
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
A AD++++ + A GWT D ++ + P+IL+INK+D + +
Sbjct: 295 QAAQEADLVLLVIDAAQGWTEADEQIYQIV--------GDRPIILIINKVDLLDDQATQT 346
Query: 453 NKVG-------------------------------NSFNDHVFTCAVTGQGIQDLETAIM 481
N F V T A QGI+ LE AI+
Sbjct: 347 NLTNLTQSALSNRSEQLAQLSDYQSSSDLPQLDDRKRFMATVKTAAALNQGIEQLEAAIL 406
Query: 482 KIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALG 541
V I AG A+NQRQ E L+R + L +++ +I +LPLDFWTIDLR +A+G
Sbjct: 407 ASVNASAIQAGDLDVAINQRQKECLLRAVQGLAKVQEAIAAQLPLDFWTIDLRATIMAIG 466
Query: 542 QISGEDISEEVLSNIFGKFCIGK 564
+I+GE ++E VL IF +FCIGK
Sbjct: 467 EITGESVTESVLDQIFSRFCIGK 489
>gi|443321719|ref|ZP_21050762.1| tRNA modification GTPase TrmE [Gloeocapsa sp. PCC 73106]
gi|442788563|gb|ELR98253.1| tRNA modification GTPase TrmE [Gloeocapsa sp. PCC 73106]
Length = 455
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 224/474 (47%), Positives = 318/474 (67%), Gaps = 26/474 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI AI T++ G++ IVR+SG A+ I R+F + G W+ SH + YG
Sbjct: 5 TITAIATAVVPQQGSISIVRVSGEQAIAIAQRLFH--------TPGKQPWK--SHSILYG 54
Query: 154 VVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
+ RH ++DE L + M APRSYT+ED+VE CHG + ++RVL+ LE GA LAQ
Sbjct: 55 YI--RHPQTQELIDEALLLIMQAPRSYTKEDIVEFHCHGGIIPVQRVLQLTLELGARLAQ 112
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFTLRAFLNGRLDL+QAE+V +L+ A S AA ALAG++G + +R C+++L
Sbjct: 113 PGEFTLRAFLNGRLDLTQAESVAELVKAGSNQAAQIALAGLEGKLGRPIVQLRHDCLDIL 172
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
EIEAR+DF++++PPL+++L+ ++ + V L TA+ +LL++GL++AIVGRPNVG
Sbjct: 173 AEIEARIDFEEDLPPLDVDLMQQQLRDVLTKVIEILSTADKGQLLRNGLKVAIVGRPNVG 232
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNAWS+ +RAIVT++ GTTRDV+E+ + V G+P+ +LDTAGIR+T D VE+IGVER
Sbjct: 233 KSSLLNAWSRCDRAIVTDLPGTTRDVVESQLVVEGIPIQVLDTAGIRDTSDRVEQIGVER 292
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S A GAD++++T+ A GWT ED+ + +++ P+ILVINKID N
Sbjct: 293 SRQAAEGADLVLLTIDAQIGWTPEDTVIYEQVKHR--------PVILVINKIDL---LIN 341
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+ + V T A++ QGI LE AI+ + +QI A +A+NQRQ E L R +
Sbjct: 342 HFPTYPETITTTVTTAAISSQGIDALEQAIVHLAQANQITAANLEFALNQRQAEALTRAR 401
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL++++ +I+ PLDFWTIDLR A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 402 LALLQVQETIDAGHPLDFWTIDLRSAIQALGEITGEEVTESVLERIFSRFCIGK 455
>gi|428768849|ref|YP_007160639.1| tRNA modification GTPase trmE [Cyanobacterium aponinum PCC 10605]
gi|428683128|gb|AFZ52595.1| tRNA modification GTPase trmE [Cyanobacterium aponinum PCC 10605]
Length = 474
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 215/473 (45%), Positives = 314/473 (66%), Gaps = 24/473 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI AI +++ G++G+VRLSG A++I R+F P KK+ W SH + YG
Sbjct: 24 TIVAIASAVVPSQGSIGVVRLSGQTALEIAKRIFHPQGKKQ--------WE--SHRILYG 73
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+ H ++DE L +PM +PRSYTREDV+E CHG + +++VL CLE GA LA G
Sbjct: 74 YIKHPDHNTIIDEALLLPMFSPRSYTREDVIEFHCHGGIMPVQQVLELCLEQGARLANSG 133
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFTLRAFLNGR+DL+QAE++ +++ AKSV A+ ALA ++G + + ++R +++L E
Sbjct: 134 EFTLRAFLNGRIDLTQAESIAEIVGAKSVEASTVALASLRGKLAQPIKNIRHTLLDILAE 193
Query: 273 IEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
+EAR+DF+D++PPL+ + V + A + ++ L T + +LL+SG+++AIVG+PNVGKS
Sbjct: 194 VEARIDFEDDLPPLDEDQVKQNLQASLEQIKQILATKDQGELLRSGIKVAIVGQPNVGKS 253
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNAWS+ +RAIVT++ GTTRDV+E+ + V G+P+ +LDTAGIR T+D VEKIGVERS
Sbjct: 254 SLLNAWSRCDRAIVTDLPGTTRDVVESQLVVKGIPIQVLDTAGIRNTEDTVEKIGVERSL 313
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA-PSASNE 451
AD+I+ T+ A GWT +++E+ +I+ +ILVINK D P N
Sbjct: 314 QAVNQADLILFTIDASQGWTEKETEIYEKIK--------GLNIILVINKTDLGNPDTINY 365
Query: 452 WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKE 511
+++ N T A +GI+ LE+AI+ + + A A+NQRQ L R K
Sbjct: 366 PSEIKQIVN----TAAAKNEGIEALESAIINTIEKGKTTARNLDIAINQRQAAALTRAKL 421
Query: 512 ALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL +++ +I+ +LPLDFWTIDLR A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 422 ALTQVEETIKNQLPLDFWTIDLRTAIQALGEITGEEVTESVLDRIFSRFCIGK 474
>gi|282901593|ref|ZP_06309512.1| tRNA modification GTPase TrmE [Cylindrospermopsis raciborskii
CS-505]
gi|281193519|gb|EFA68497.1| tRNA modification GTPase TrmE [Cylindrospermopsis raciborskii
CS-505]
Length = 460
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/467 (47%), Positives = 311/467 (66%), Gaps = 38/467 (8%)
Query: 107 GAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLD-RHGNVVDE 165
G+VGIVR+SG A+ I +F + G W SH + YG V VVDE
Sbjct: 23 GSVGIVRVSGDQAMAIAHTLFY--------TPGKQIWE--SHRILYGFVRQPETKQVVDE 72
Query: 166 VLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLD 225
L + M APRS+TREDVVE CHG + +++VL+ CLE GA LAQPGEFTLRAFLNGRLD
Sbjct: 73 ALLLIMKAPRSFTREDVVEFHCHGGIIPVQQVLQLCLENGARLAQPGEFTLRAFLNGRLD 132
Query: 226 LSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPP 285
L+QAE++ L+ AKS AA ALAG++G + + S+R +C+++L EIEAR+DF++++PP
Sbjct: 133 LTQAESIADLVGAKSPQAAQTALAGLRGKLAQPIRSLRNQCLDILAEIEARIDFEEDLPP 192
Query: 286 LNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAI 345
L+ ++ +I+ +S + L T +LL+SGL++AIVGRPNVGKSSLLNAWS+ +RAI
Sbjct: 193 LDQERIITQINQISVKIARLLSTKEKGELLRSGLKVAIVGRPNVGKSSLLNAWSQCDRAI 252
Query: 346 VTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTV 405
VT++ GTTRD++E+ + V G+P+ +LDTAGIRET D VEK+GVERS A AD++++T+
Sbjct: 253 VTDLPGTTRDIVESQLVVGGIPIQVLDTAGIRETVDQVEKLGVERSRQAANSADLVLLTI 312
Query: 406 SAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID--------CAPSASNEWNKVGN 457
A GW S D E+ +++ P+ILVINKID C+P
Sbjct: 313 DATAGWQSGDEEIYQQVKHR--------PLILVINKIDLVEDLGGICSP----------- 353
Query: 458 SFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLK 517
+ V T A +GI+DLE AI+++V +I AG A+NQRQ L++ + LV+++
Sbjct: 354 NIEKAVKTAAAQNRGIEDLEQAILEVVQTQKIVAGDLDLAINQRQAAALIKAQIDLVQVQ 413
Query: 518 SSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+I ++LPLDFWTIDLR A ALG+I+GE+++E +L IF +FCIGK
Sbjct: 414 KTIVDQLPLDFWTIDLRGAIHALGEITGEEVTESLLDLIFSRFCIGK 460
>gi|427724856|ref|YP_007072133.1| tRNA modification GTPase trmE [Leptolyngbya sp. PCC 7376]
gi|427356576|gb|AFY39299.1| tRNA modification GTPase trmE [Leptolyngbya sp. PCC 7376]
Length = 456
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/474 (46%), Positives = 317/474 (66%), Gaps = 26/474 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI AI +++ G++GIVRLSG A I R+F S G W SH + YG
Sbjct: 6 TIVAIASAVVPNQGSIGIVRLSGQDAPAIAQRLFH--------SPGQQQWE--SHRILYG 55
Query: 154 VVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
+ RH ++DE L + MLAPRS+T EDVVE CHG + +++VL+ CL++GA LA+
Sbjct: 56 YI--RHPETKELIDEALLLLMLAPRSFTAEDVVEFHCHGGIMPVQQVLQLCLDSGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEF+LRAFLNGR+DL+QAE+V +L+ AKS +A ALAGIQG + + +R++C+++L
Sbjct: 114 PGEFSLRAFLNGRIDLTQAESVAELVGAKSPQSAQVALAGIQGRLAQPIRDLRSQCLDIL 173
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+E+EAR+DF+D++PPL+ + +++ + V L+T++ +LL+SGL++AIVGRPNVG
Sbjct: 174 SEVEARIDFEDDLPPLDEVGIREELTKVLATVNQILQTSDRGELLRSGLKVAIVGRPNVG 233
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIR+T+D VE+IGVER
Sbjct: 234 KSSLLNAWSRSDRAIVTDLPGTTRDVVESQLIVKGIPVQVLDTAGIRQTEDTVEQIGVER 293
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S + AD+++ T+ A GWT D E+ ++ P+ILVINK D +
Sbjct: 294 SLQASQKADLVLFTIDAGTGWTEADQEIFAQV--------GDRPLILVINKTDLGDPTT- 344
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+ S V+T A +GI++LE AI V + A +A+NQRQ L R K
Sbjct: 345 --IAIPESITQVVYTTAAQQKGIEELEEAIATTVAEGTVGAADLDFAINQRQAAALTRAK 402
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L ++ +I ++LPLDFWTIDLR A +LG+I+GE ++E VL IF +FCIGK
Sbjct: 403 KSLEQVADTITDQLPLDFWTIDLRTAIQSLGEITGEGVTESVLDRIFSRFCIGK 456
>gi|428317096|ref|YP_007114978.1| tRNA modification GTPase trmE [Oscillatoria nigro-viridis PCC 7112]
gi|428240776|gb|AFZ06562.1| tRNA modification GTPase trmE [Oscillatoria nigro-viridis PCC 7112]
Length = 461
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 228/479 (47%), Positives = 316/479 (65%), Gaps = 21/479 (4%)
Query: 87 EKAGTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT 146
E T TIAAI T+I G+VGIVR+SG A+ I +F + G W
Sbjct: 3 ESLTTGGTIAAIATAIVPQQGSVGIVRVSGSAALKIAETLFC--------APGRQIWE-- 52
Query: 147 SHVVEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAG 205
SH + YG + + +VDE L + M APRS+TREDVVE CHG + +++VL+ CLE G
Sbjct: 53 SHRILYGHIRRPQTQELVDEALLLIMKAPRSFTREDVVEFHCHGGIMAVQQVLQLCLENG 112
Query: 206 ATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAK 265
A LA PGEF+LRAFLNGRLDL+QAE++ L+ AKS AAA +ALAG+QG + + +R
Sbjct: 113 ARLAGPGEFSLRAFLNGRLDLTQAESIADLVGAKSPAAAQSALAGLQGKLAQPIRQLRTT 172
Query: 266 CIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVG 325
C+++L EIEAR+DF++++PPL+ +I+ + + + L TA+ +LL++GL++AIVG
Sbjct: 173 CLDVLAEIEARIDFEEDLPPLDEAKTSLEINHVLEALSTILATADRGELLRTGLKVAIVG 232
Query: 326 RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEK 385
RPNVGKSSLLNAWSKS+RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIRET+D VEK
Sbjct: 233 RPNVGKSSLLNAWSKSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETEDKVEK 292
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445
IGVERS A A AD++++T+ A GWT DSE+ +++ + +I++INKID
Sbjct: 293 IGVERSRAAAKQADLVLLTIDAESGWTEGDSEIYEQVKHRQ--------LIIIINKIDLV 344
Query: 446 PSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+ + + V A +GI+DLETAI+ V + A A+NQRQ
Sbjct: 345 KTIPE--LPFSSEIHPIVAAAAALDRGIEDLETAILDAVSGGNLQAANSDLAINQRQAAA 402
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L R K +L + +I +LPLDFWTIDLR A ALG+++GE+++E VL IF +FCIGK
Sbjct: 403 LTRAKISLEQCTDTISNKLPLDFWTIDLRGAIQALGEVTGEEVTESVLDRIFSRFCIGK 461
>gi|37522021|ref|NP_925398.1| tRNA modification GTPase TrmE [Gloeobacter violaceus PCC 7421]
gi|46577365|sp|Q7NHT3.1|MNME_GLOVI RecName: Full=tRNA modification GTPase MnmE
gi|35213020|dbj|BAC90393.1| glr2452 [Gloeobacter violaceus PCC 7421]
Length = 453
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 222/472 (47%), Positives = 307/472 (65%), Gaps = 23/472 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI AI T+I G+VGIVRLSG A+ + RVF+ K+ +S H + YG
Sbjct: 4 TICAIATAIVPQQGSVGIVRLSGSEALALAKRVFRLRGKQAFES----------HRIHYG 53
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
LD G ++DE L + M APRS+TREDVVE CHG ++++LR C+E GA LA+PGE
Sbjct: 54 HFLDADGGILDECLVLYMQAPRSFTREDVVEFHCHGGIAVIQQILRRCVELGARLARPGE 113
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FTLRAFLNGR+DL++AE V +L+SA+S AA A+ G+ G + V +R+ C++LL E+
Sbjct: 114 FTLRAFLNGRIDLTEAEAVAELVSARSPEAARLAVGGLAGKLAGEVRQLRSGCLDLLAEL 173
Query: 274 EARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSS 333
EARLDF+D++PPL+ V I + T+ +LL++GL++AIVGRPNVGKSS
Sbjct: 174 EARLDFEDDLPPLDTGAVRANIGQSLAHARRLMATSTRGELLRTGLKVAIVGRPNVGKSS 233
Query: 334 LLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEA 393
LLNAWS+++RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIRE D VE+IG+ERS A
Sbjct: 234 LLNAWSRTDRAIVTDLPGTTRDVVESMLNVQGIPVQVLDTAGIREATDTVERIGIERSHA 293
Query: 394 VALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDC-APSASNEW 452
A AD++++ + +GWT DS++ +++ P+I+V+NK D P
Sbjct: 294 AAREADLVLLVIDRTEGWTCADSDIFAQVRER--------PVIVVVNKSDLEGPPVYTPS 345
Query: 453 NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEA 512
V + V T A G GI LE AI+ +G +AVN+RQ E L+R + A
Sbjct: 346 RGVLAT----VPTAAPVGDGIDALEGAILAALGQEAFSVADGDFAVNERQYEALVRAEVA 401
Query: 513 LVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
LVR+ ++E LP+DFWTIDLR AA ALG+++GE ++E VL IF KFCIGK
Sbjct: 402 LVRVVETVEAALPIDFWTIDLRAAAHALGEVTGESVTEAVLERIFSKFCIGK 453
>gi|434391366|ref|YP_007126313.1| tRNA modification GTPase trmE [Gloeocapsa sp. PCC 7428]
gi|428263207|gb|AFZ29153.1| tRNA modification GTPase trmE [Gloeocapsa sp. PCC 7428]
Length = 459
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 223/459 (48%), Positives = 314/459 (68%), Gaps = 22/459 (4%)
Query: 107 GAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLD-RHGNVVDE 165
G+VGIVR+SG ++ I +F+ + G W SH + YG + D + VVDE
Sbjct: 22 GSVGIVRVSGTESLAIAQALFQ--------APGRQVWE--SHRILYGYIRDPQTKQVVDE 71
Query: 166 VLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLD 225
L + M APRSYTREDVVE CHG + +++VL+ CL GA LAQPGEFTLRAFLNGRLD
Sbjct: 72 ALLLIMQAPRSYTREDVVEFHCHGGIMAVQQVLQLCLVQGAKLAQPGEFTLRAFLNGRLD 131
Query: 226 LSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPP 285
L+QAE++ L+ A+S AA ALAG+QG + + +RA+C+++L EIEAR+DF++++PP
Sbjct: 132 LTQAESIADLVGARSPQAAQTALAGLQGKLAHPIRDLRARCLDILAEIEARIDFEEDLPP 191
Query: 286 LNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAI 345
L+ N ++ ++ + V L TA+ +LL+SGL++AIVGRPNVGKSSLLNAWS+S+RAI
Sbjct: 192 LDCNEIVSQLAEVLAQVTKILATADRGELLRSGLKVAIVGRPNVGKSSLLNAWSRSDRAI 251
Query: 346 VTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTV 405
VT++ GTTRDV+E+ + V G+P+ +LDTAGIR T+D VEKIGVERS A AD++++T+
Sbjct: 252 VTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRATEDQVEKIGVERSLTSAAAADLVLLTI 311
Query: 406 SAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFT 465
A GWT+ D+E+ ++Q P+ILVINK D AS E + + V T
Sbjct: 312 DAAAGWTAADAEIYQKVQHR--------PLILVINKTDL---ASAEAVNYPDDISYVVTT 360
Query: 466 CAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELP 525
A QGI++LE I+ V ++ + A+NQRQ L R K +L +++++I+++LP
Sbjct: 361 AAAKNQGIENLEQVILTTVQTGKVHSADTDLAINQRQAAALTRAKASLEQVQTTIKQQLP 420
Query: 526 LDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
LDFWTIDLR A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 421 LDFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 459
>gi|170077787|ref|YP_001734425.1| tRNA modification GTPase TrmE [Synechococcus sp. PCC 7002]
gi|205829178|sp|B1XKC3.1|MNME_SYNP2 RecName: Full=tRNA modification GTPase MnmE
gi|169885456|gb|ACA99169.1| tRNA modification GTPase TrmE [Synechococcus sp. PCC 7002]
Length = 460
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 225/474 (47%), Positives = 323/474 (68%), Gaps = 22/474 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI AI +++ G++GIVRLSG A+ P+ ++ + G +W SH + YG
Sbjct: 6 TIVAIASAVVPNQGSIGIVRLSGAAAL--------PIARQLFQDPGQQTWE--SHRILYG 55
Query: 154 VVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
V RH +VDE L + MLAPRS+T EDVVE CHG + +++VL+ CL AGA LA
Sbjct: 56 YV--RHPQTQTIVDEALLLLMLAPRSFTAEDVVEFHCHGGIIPVQQVLQLCLGAGARLAT 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFTLRAFLNGR+DL+QAE+V +L+ AKS +A ALAGIQG + + +R +C+++L
Sbjct: 114 PGEFTLRAFLNGRIDLTQAESVAELVGAKSPQSAQVALAGIQGKLAQPIQQLRGQCLDIL 173
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
E+EAR+DF+D++PPL+ + + + + V L+T++ +LL++GL++AIVGRPNVG
Sbjct: 174 AEVEARIDFEDDLPPLDEPQIQRDLTQVLEKVAQILQTSDRGELLRTGLKVAIVGRPNVG 233
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIR+T+D VEKIGV R
Sbjct: 234 KSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVQGIPVQVLDTAGIRDTEDAVEKIGVAR 293
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S A + AD+I+ T+ A GWT+ D E+ RI +T+++ P+IL++NKID +
Sbjct: 294 SLAASQQADLILFTIDAAVGWTAADQEIFQRI----VATKANQPLILILNKIDIGQPEAI 349
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
E + V T A QG+ +LETAI +V ++ A +A+NQRQ L + +
Sbjct: 350 E---IPPQVQGVVKTAAAQHQGVDELETAIANLVQAGKVGAADLDFAINQRQAAALAQAQ 406
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+AL++++ +I + LPLDFWTIDLR A ALG+I+GE ++E VL IF +FCIGK
Sbjct: 407 QALIQVRETIAQGLPLDFWTIDLRSAIQALGEITGEGVTESVLDRIFSRFCIGK 460
>gi|22002507|gb|AAM82659.1| TrmE [Synechococcus elongatus PCC 7942]
Length = 482
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 227/473 (47%), Positives = 309/473 (65%), Gaps = 20/473 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+I G+VGIVRLSG A +I ++F+ +G W SH + YG
Sbjct: 28 TIAAIATAIVPQQGSVGIVRLSGAAATEIARQIFQ--------IAGQQPWE--SHRILYG 77
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+ D G +VDE L +PMLAPRSYTREDVVEL CHG + +++ L+ C+ AGA LA+PG
Sbjct: 78 YIRDPESGRLVDEALLLPMLAPRSYTREDVVELHCHGGLMPVQQTLQLCIRAGARLAEPG 137
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFTLRAFLNGRLDLSQAE++ LISA+S AA AAL +QG + +R +C+++L E
Sbjct: 138 EFTLRAFLNGRLDLSQAESIADLISAQSPQAAQAALGSLQGKLGHPIRQLRDRCLDILAE 197
Query: 273 IEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
+EAR+DF+D++PPL+L + ++ A + + G +IAIVGRPNVGKS
Sbjct: 198 VEARIDFEDDLPPLDLEAIAAQLTAAGAGHASDFINCRSRGTVAYGPKIAIVGRPNVGKS 257
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNAWS+ +RAIVT++ GTTRD++E+ + V G+PV +LDTAGIRET D VE+IGVERS
Sbjct: 258 SLLNAWSRCDRAIVTDLPGTTRDLVESQLIVGGIPVQVLDTAGIRETSDQVEQIGVERSR 317
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
A AD++++T+ A GW++ED + + S P++LVINK D A
Sbjct: 318 RAAQSADLVLLTIDASAGWSAEDQTIWEAV--------SDRPILLVINKRDRLSEAERHA 369
Query: 453 NKV-GNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKE 511
+ F V+T A QGI+DLE AI+ VG + + WA+NQRQ L +
Sbjct: 370 IALPQQEFKAIVWTAAAQQQGIEDLEAAILAAVGTGDLTSANWDWALNQRQVAALTTAQT 429
Query: 512 ALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL R++ +++ +LPLDFWTIDLR+A ALG I+GE+I+E +L IF +FCIGK
Sbjct: 430 ALRRVEETLQAQLPLDFWTIDLREAIAALGSITGEEIAESMLDLIFSRFCIGK 482
>gi|303285410|ref|XP_003061995.1| hypothetical protein MICPUCDRAFT_21154 [Micromonas pusilla
CCMP1545]
gi|226456406|gb|EEH53707.1| hypothetical protein MICPUCDRAFT_21154 [Micromonas pusilla
CCMP1545]
Length = 545
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 234/500 (46%), Positives = 301/500 (60%), Gaps = 40/500 (8%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAA+ T + G V I+RLSG A+ R+F+P + G SH+ YG
Sbjct: 57 TIAAVATPVVPQAGGVAILRLSGDNALAATSRIFRPASSRASLRRGE----CVSHLALYG 112
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT----- 207
V+D G +VDE L +PMLAPRSYT EDVVE+ CHG VC++RVL + AG
Sbjct: 113 DVVDPASGEIVDEALVLPMLAPRSYTTEDVVEIHCHGGSVCVQRVLALLVNAGGDRSGSG 172
Query: 208 ---------------------LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADA 246
LA+ GEFTLRAFLNGR+DL+QAE V+ L+SAK+ AA +
Sbjct: 173 TGGARGTDEEDAKDAAIPAVRLARAGEFTLRAFLNGRIDLTQAEAVQSLVSAKTTVAASS 232
Query: 247 ALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENAL 306
ALA ++GG ++ V R C++LL E+EARLDFDDEM PL+ + V + + L
Sbjct: 233 ALASLRGGLATPVKDARRVCVDLLAELEARLDFDDEMDPLDEDGVATSVERAEAKIREVL 292
Query: 307 ETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV 366
TA LL +G+ +AIVGRPN GKSSLLNAW++SERAIVT IAGTTRDV+EAS+ V GV
Sbjct: 293 ATARRGALLDAGVVVAIVGRPNAGKSSLLNAWTRSERAIVTPIAGTTRDVVEASINVRGV 352
Query: 367 PVTLLDTAGIR--ETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQS 424
PVTLLDTAGIR D VE +GVERS A GADV++ V A +GWT D ++L I
Sbjct: 353 PVTLLDTAGIRFGVGIDEVEAMGVERSRAALAGADVVVFVVDASEGWTDGDDDILRGITG 412
Query: 425 NKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV 484
+ +I + D + +F V A G G+ DLE A+ +++
Sbjct: 413 ER-------VVIGDGDGDDDDDEDEDAGEVKDGAFASTVTLSATRGDGVDDLERALAEVI 465
Query: 485 GLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQIS 544
G + G W NQRQ E L +AL RLK +I E LP+DFWTIDLR+AALALG+++
Sbjct: 466 GGGDVDVEGAAWVANQRQAEALTTALDALSRLKDTIAEGLPVDFWTIDLREAALALGEVT 525
Query: 545 GEDISEEVLSNIFGKFCIGK 564
GED++E+VL IF KFCIGK
Sbjct: 526 GEDVAEDVLDVIFTKFCIGK 545
>gi|284929261|ref|YP_003421783.1| tRNA modification GTPase trmE [cyanobacterium UCYN-A]
gi|284809705|gb|ADB95402.1| tRNA modification GTPase trmE [cyanobacterium UCYN-A]
Length = 457
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/473 (44%), Positives = 313/473 (66%), Gaps = 24/473 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++ G+VGIVRLSG A I ++F + G W SH V YG
Sbjct: 7 TIAAIATAVVPEEGSVGIVRLSGDKAYAIAKKIFI--------APGKQQWE--SHKVLYG 56
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+ + ++DE L + MLAPRSYTRED+VE CHG + +++VL+ C++ GA LA+ G
Sbjct: 57 YIHSSKDSRIIDEALLILMLAPRSYTREDIVEFHCHGGIIVVQQVLQLCIKEGAILAEHG 116
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFTLRAFLNGR+DL+QAE++ +++ AKS A+ A+AGIQG S+ + ++R C+ELL+E
Sbjct: 117 EFTLRAFLNGRIDLTQAESISEIVGAKSPLASQIAMAGIQGKLSNPIKNLRLDCLELLSE 176
Query: 273 IEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
IE+R+DF++++PPL+ +++ KI V+ L T+ +LL+SGL+IAI+GRPNVGKS
Sbjct: 177 IESRIDFEEDLPPLSQVVILQKIQDFLHRVKKLLSTSKTGELLRSGLKIAILGRPNVGKS 236
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLN+WS+S +AIVT++ GTTRD++E+++ + +P+ +LDTAGIR TD+ +EKIGV+R+
Sbjct: 237 SLLNSWSRSNKAIVTDLPGTTRDIVESNLIIKNIPIKVLDTAGIRHTDNQIEKIGVQRTH 296
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDC-APSASNE 451
A AD+I++T+ A GWT E++E+ +I+ P+IL++NKID P S
Sbjct: 297 LAANQADLILLTIDAQIGWTEEETEIYKKIK--------HLPIILIVNKIDLNVPDLS-- 346
Query: 452 WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKE 511
+ + + + A+ GI +E AI+ + + A + +NQRQ E L+R K
Sbjct: 347 --IIPSEIQEVIKISAIQNLGIDSIEEAILNFIYKKNLIAKNVDFTINQRQLEILIRVKI 404
Query: 512 ALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
A + +I ELPLDF TIDLR A LG+I+G++++E +LS IF FCIGK
Sbjct: 405 AFEDIIKTINNELPLDFITIDLRSAIKILGEITGDEVTESLLSKIFSTFCIGK 457
>gi|300868767|ref|ZP_07113378.1| tRNA modification GTPase mnmE [Oscillatoria sp. PCC 6506]
gi|300333328|emb|CBN58570.1| tRNA modification GTPase mnmE [Oscillatoria sp. PCC 6506]
Length = 464
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 233/479 (48%), Positives = 316/479 (65%), Gaps = 26/479 (5%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
T TIAAI T+I G+VGIVR+SG A+ I +F + G+ W SH +
Sbjct: 7 TGQTIAAIATAIVPQQGSVGIVRVSGDEAIAIAHTLFH--------APGNQIWE--SHRI 56
Query: 151 EYGVVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
YG + RH +VDE L + M APRSYTREDVVE CHG + +++VL+ CLE+GA
Sbjct: 57 LYGYI--RHPQSQQLVDEALLLIMKAPRSYTREDVVEFHCHGGIMAVQQVLQLCLESGAR 114
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
LAQ GEFTLRAFLNGRLDLSQAE+V L+ A+S AAA AALAG+QG ++ + +RA C+
Sbjct: 115 LAQAGEFTLRAFLNGRLDLSQAESVADLVGARSPAAAQAALAGLQGKLATPIRELRATCL 174
Query: 268 ELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
++L EIEAR+DF++++PPL+ + +I + ++ L TA+ +LL+SGL++AIVGRP
Sbjct: 175 DVLAEIEARIDFEEDLPPLDEGAIALQIQHILAELSRILATADSGELLRSGLKVAIVGRP 234
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLNAWS+ +RAIVT++ GTTRDV+E+ + V G+P+ +LDTAGIRET+D VEKIG
Sbjct: 235 NVGKSSLLNAWSRCDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRETEDRVEKIG 294
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
V RS A AD++++ + A GWT D E+ +++ P+IL++NK+D
Sbjct: 295 VARSRQAAESADLVLLAIDAAAGWTEGDREIYQQVKHR--------PVILIVNKVDLVSE 346
Query: 448 ASNE--WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
E +K+ N V A QGI+DLE AI+ V + AG A+NQRQ
Sbjct: 347 KDLEILQSKIENP-QAKVLAAAAYNQGIEDLEQAILTAVNAGDLQAGNLDLAINQRQAAA 405
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L R K +L + +I +LPLDFWTIDLR A ALG+I+GE ++E VL IF +FCIGK
Sbjct: 406 LTRAKISLEQCADTINNQLPLDFWTIDLRGAIQALGEITGEGVTESVLDRIFSRFCIGK 464
>gi|428306432|ref|YP_007143257.1| tRNA modification GTPase trmE [Crinalium epipsammum PCC 9333]
gi|428247967|gb|AFZ13747.1| tRNA modification GTPase trmE [Crinalium epipsammum PCC 9333]
Length = 458
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 231/474 (48%), Positives = 313/474 (66%), Gaps = 25/474 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++ G+VGIVR+SG A + + G+ W SH + YG
Sbjct: 7 TIAAIATAVVPQQGSVGIVRVSGAEA--------IAIAHAIFHAPGNQPWE--SHRILYG 56
Query: 154 VVLDRH---GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
V RH +VDE L + M +PRSYTREDVVE CHG + +++VL+ CLE GA LA
Sbjct: 57 NV--RHPQTRQLVDEALLLIMQSPRSYTREDVVEFHCHGGIMPVQQVLQLCLEQGARLAT 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFTLRAFLNGRLDL+QAE++ L+ A+S AA+ AALAG+QG + + +R + +++L
Sbjct: 115 PGEFTLRAFLNGRLDLTQAESIADLVGAQSPAASQAALAGLQGKLAQPIRRLRMEALDIL 174
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
EIEAR+DF++++PPL+ + +I + +V L TA+ +LL+SGL++AIVGRPNVG
Sbjct: 175 AEIEARIDFEEDLPPLDEPAITAQIEHILAEVSLILATADQGELLRSGLKVAIVGRPNVG 234
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIR+T D+VEKIGVER
Sbjct: 235 KSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVKGIPVQVLDTAGIRDTVDVVEKIGVER 294
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S A AD++I+T+ A GWTS D ++ ++Q P+ILVINKID S
Sbjct: 295 SRLTAQAADLVILTIDAQAGWTSGDQQIYEQVQQR--------PVILVINKIDLVQDISQ 346
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+ V T A QGI LE AI+ V + A A+NQRQ L RTK
Sbjct: 347 L--SLPTQIQQIVHTAAAHNQGIDTLENAIIGAVQSGNLQAANLDIAINQRQAAALTRTK 404
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+L +++++I +LPLDFWTIDLR A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 405 ISLEQVQATIANQLPLDFWTIDLRGAIQALGEITGEEVTESVLDKIFSRFCIGK 458
>gi|434388872|ref|YP_007099483.1| tRNA modification GTPase TrmE [Chamaesiphon minutus PCC 6605]
gi|428019862|gb|AFY95956.1| tRNA modification GTPase TrmE [Chamaesiphon minutus PCC 6605]
Length = 464
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 226/478 (47%), Positives = 317/478 (66%), Gaps = 25/478 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI AI T++ G+VGIVRLSG AV I ++FK + G W SH + YG
Sbjct: 5 TIVAIATAVVPQQGSVGIVRLSGVDAVAIARQIFK--------TPGRQEWE--SHRILYG 54
Query: 154 VVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
V H N+ +DE L + MLAPRSYTREDVVE+ HG + ++++L+ C+E GA +A+PG
Sbjct: 55 YVRHPHTNLTIDEALLLVMLAPRSYTREDVVEIHSHGGIILVQQILQLCVECGAKVAEPG 114
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFTLRAFLNGR+DL+QAE++ L+ A S AAA A+AG+QG + +RA+ ++LL E
Sbjct: 115 EFTLRAFLNGRIDLTQAESISDLVGALSPAAAQTAIAGLQGKLRQPIVRLRAEALDLLAE 174
Query: 273 IEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
IEAR+DF++++PPL+L V + A++ ++ TA+ +LL+SGL++AI+G+PNVGKS
Sbjct: 175 IEARIDFEEDLPPLDLVDVTANLRALATEIGRIAATADRGELLRSGLKVAILGQPNVGKS 234
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNAWS+S+RAIVT + GTTRDV+E+ + V G+PV +LDTAGIR+T D+VE+IGV RS
Sbjct: 235 SLLNAWSRSDRAIVTPLPGTTRDVVESRLVVGGIPVQVLDTAGIRDTSDVVEQIGVARSR 294
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
A AL AD+I++T+ A GWT ++E+ I ++ P I VINK+D +
Sbjct: 295 AAALAADLILLTIDAQIGWTEVETEIYREI--------ANIPTIAVINKVDLVTTVPKLD 346
Query: 453 NKVGNSFNDHVFTCAVTGQ------GIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
G S +G GI LE AI+ IV ++ A A+NQRQ L
Sbjct: 347 LPTGISAVVETAAAVTSGTTAPNALGIDRLEAAILGIVAGGKLHAANIEIAINQRQAAAL 406
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+R + AL ++ ++IE +LPLDFWTIDLR+A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 407 IRAQTALQQVLTTIESQLPLDFWTIDLREAIRALGEITGEEVTESVLDRIFSRFCIGK 464
>gi|86610114|ref|YP_478876.1| tRNA modification GTPase TrmE [Synechococcus sp. JA-2-3B'a(2-13)]
gi|123500914|sp|Q2JIE6.1|MNME_SYNJB RecName: Full=tRNA modification GTPase MnmE
gi|86558656|gb|ABD03613.1| tRNA modification GTPase TrmE [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 459
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 219/458 (47%), Positives = 305/458 (66%), Gaps = 21/458 (4%)
Query: 107 GAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEV 166
G+VGIVRLSG A+ IV +F P ++ + W SH + YG + D G ++DE
Sbjct: 23 GSVGIVRLSGSRALPIVQAIFTPARR-------NAVWE--SHRLLYGWIRDEKGQILDEA 73
Query: 167 LAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDL 226
LAV M APRSYTREDV EL CHG + ++ L+ CL GA LAQPGEF+LRAFLNGR+DL
Sbjct: 74 LAVWMQAPRSYTREDVAELHCHGGIMVVQATLQQCLRQGARLAQPGEFSLRAFLNGRIDL 133
Query: 227 SQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPL 286
+QAE+V L++A+S AA ALAG+QG + ++R + + LL EIEARLDF++++PPL
Sbjct: 134 TQAESVADLVAARSPQAARMALAGLQGKLGGSIRALRQELLGLLAEIEARLDFEEDLPPL 193
Query: 287 NLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIV 346
++ ++ A+ ++ L TA +LL++G+++AIVGRPNVGKSSLLNAWS +RAIV
Sbjct: 194 DVAAWQARLQAIQTQIQALLATAERGQLLRTGVKVAIVGRPNVGKSSLLNAWSGQDRAIV 253
Query: 347 TEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVS 406
T++ GTTRDV+E+ + V G+PV LLDTAGIR T+D VE++GVERS+ +A ADV+++ +
Sbjct: 254 TDLPGTTRDVVESHLVVKGIPVQLLDTAGIRATEDPVERLGVERSQRLAQAADVLVLVID 313
Query: 407 AVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTC 466
A GWT+ D+ + I+ P+ILVINK D AP E + V
Sbjct: 314 AQAGWTAADAAIYESIRHR--------PLILVINKTDLAPP---EGIPLPPEIAHRVPAV 362
Query: 467 AVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPL 526
A G+GI +LE A+ ++V + P ++NQRQ L + + +L ++ +I+ +LPL
Sbjct: 363 AAQGKGIPELEEALEQLVTQGR-PQPNLEISLNQRQAAALQQAQASLEQVGQAIQAQLPL 421
Query: 527 DFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
DFW+IDLR A ALGQI+GE+ISE VL IF +FCIGK
Sbjct: 422 DFWSIDLRGALHALGQITGEEISESVLDQIFSRFCIGK 459
>gi|443476319|ref|ZP_21066231.1| tRNA modification GTPase trmE [Pseudanabaena biceps PCC 7429]
gi|443018712|gb|ELS32916.1| tRNA modification GTPase trmE [Pseudanabaena biceps PCC 7429]
Length = 461
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 226/474 (47%), Positives = 319/474 (67%), Gaps = 21/474 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+I G+VGIVRLSG +V I ++F G W SH + YG
Sbjct: 6 TIAAIATAISPQQGSVGIVRLSGDRSVAIAQQIFA--------MGGKQVWE--SHRILYG 55
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
V + +VDE L + M APRS+TREDVVE CHG + +++VL CLE GA LA+ G
Sbjct: 56 YVRNPVTKAIVDESLLLLMKAPRSFTREDVVEFHCHGGIMAVQQVLNLCLENGARLAEAG 115
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EF+LRAFLNGR+DL+QAE++ L+ AKS AA +A+A ++G + + +R+KC+ +LTE
Sbjct: 116 EFSLRAFLNGRIDLTQAESINDLVGAKSAQAAQSAIASLRGKLAQSLKYLRSKCLNVLTE 175
Query: 273 IEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
IEAR+DF+D++PPL + V ++ ++Q+ + L TA+ +LL++GL++AIVGRPNVGKS
Sbjct: 176 IEARIDFEDDLPPLEVEWVKAEVLHVAQEAQGILATADRGELLRTGLKVAIVGRPNVGKS 235
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNAWS+S+RAIVT++ GTTRDV+++ + V G+P+ +LDTAGIRET+DIVEKIGVERS
Sbjct: 236 SLLNAWSRSDRAIVTDLPGTTRDVVDSQLVVGGIPIQVLDTAGIRETEDIVEKIGVERSR 295
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP-SASNE 451
A AD+++M V A GW ++D E+ T P+ILVINKID A S +
Sbjct: 296 RAAQSADLVLMVVDASVGWIAQDIEIYE--------TVCDRPIILVINKIDLATDSLTIP 347
Query: 452 WNKVGNSFNDHVFTCAVTGQ-GIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
K + + + A + Q GI++LE AI++ + +I A A+NQRQ L+R
Sbjct: 348 LEKDPRNGDIPIVKTAASQQRGIEELEDAILQCIHQDRIAAANMEVAINQRQKACLLRVV 407
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L ++ +I + LPLDFWTIDLR A A+G+I+GE+++E VL IF +FCIGK
Sbjct: 408 QSLANVQVAIADHLPLDFWTIDLRAAISAIGEITGEEVTESVLDQIFSRFCIGK 461
>gi|16330488|ref|NP_441216.1| tRNA modification GTPase TrmE [Synechocystis sp. PCC 6803]
gi|383322229|ref|YP_005383082.1| tRNA modification GTPase TrmE [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325398|ref|YP_005386251.1| tRNA modification GTPase TrmE [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491282|ref|YP_005408958.1| tRNA modification GTPase TrmE [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436549|ref|YP_005651273.1| tRNA modification GTPase TrmE [Synechocystis sp. PCC 6803]
gi|451814646|ref|YP_007451098.1| thiophen and furan oxidation protein [Synechocystis sp. PCC 6803]
gi|2495120|sp|P73839.1|MNME_SYNY3 RecName: Full=tRNA modification GTPase MnmE
gi|1652979|dbj|BAA17896.1| thiophen and furan oxidation protein [Synechocystis sp. PCC 6803]
gi|339273581|dbj|BAK50068.1| tRNA modification GTPase TrmE [Synechocystis sp. PCC 6803]
gi|359271548|dbj|BAL29067.1| tRNA modification GTPase TrmE [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274718|dbj|BAL32236.1| tRNA modification GTPase TrmE [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277888|dbj|BAL35405.1| tRNA modification GTPase TrmE [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958410|dbj|BAM51650.1| tRNA modification GTPase TrmE [Bacillus subtilis BEST7613]
gi|451780615|gb|AGF51584.1| thiophen and furan oxidation protein [Synechocystis sp. PCC 6803]
Length = 456
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 222/474 (46%), Positives = 316/474 (66%), Gaps = 26/474 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+I G++G+VRLSGP ++ I +F + G+ +W SH + YG
Sbjct: 6 TIAAIATAIVPQQGSIGVVRLSGPQSLTIAKTLFD--------APGNQTWE--SHRILYG 55
Query: 154 VVLDRHGNV---VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
V RH +DE L + MLAPRSYT+EDVVE QCHG + +++VL+ CL+ GA LAQ
Sbjct: 56 HV--RHPQTKAAIDEALLLLMLAPRSYTKEDVVEFQCHGGIMPVQQVLQLCLQQGARLAQ 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEF+ RAFLNGRLDL+QAE++ +L+ A+S AA ALAG+QG + + +R C+++L
Sbjct: 114 PGEFSFRAFLNGRLDLTQAESISELVGAQSPQAAAIALAGLQGKLAQPIRDLRNTCLDIL 173
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
E+EAR+DF+D++PPL+ + + ++ + Q +E+ L TA +LL++GL++AIVG+PNVG
Sbjct: 174 AEVEARIDFEDDLPPLDEDSIRQQLQNLYQQLEDILNTAQRGELLRTGLKVAIVGQPNVG 233
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNAWS+++RAIVT++ GTTRDV+E+ + V G+P+ +LDTAGIRET D VE+IGVER
Sbjct: 234 KSSLLNAWSRTDRAIVTDLPGTTRDVVESQLVVEGIPIQVLDTAGIRETADQVEQIGVER 293
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S A AD++++TV A GWT D + +++ P+ILVINKID +
Sbjct: 294 SRKAAQQADLVLLTVDAHQGWTEADQLIYEQVKDR--------PLILVINKIDLGRADLV 345
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+ + V T A GI+ LE AI++ V + +A+NQRQ L +
Sbjct: 346 SYPP---EITNTVLTAAAANLGIEALENAIIEQVNQTNLSPQNLDFAINQRQEAVLTEAQ 402
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL +L+ ++ E+LPLDFWTIDLR A ALGQ++GE ++E VL IF +FCIGK
Sbjct: 403 LALKQLQQTMAEQLPLDFWTIDLRLAINALGQVTGETVTESVLDRIFSRFCIGK 456
>gi|443319373|ref|ZP_21048606.1| tRNA modification GTPase TrmE [Leptolyngbya sp. PCC 6406]
gi|442781060|gb|ELR91167.1| tRNA modification GTPase TrmE [Leptolyngbya sp. PCC 6406]
Length = 461
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 226/472 (47%), Positives = 316/472 (66%), Gaps = 21/472 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+I G+VGIVRLSG AV + R+F+ + G W +H V YG
Sbjct: 10 TIAAIATAIVPAQGSVGIVRLSGAEAVTVARRLFQ--------APGEQRWE--THRVLYG 59
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
V+D + G VDE L + ML+PRSYTREDVVE CHG + +++VL+ C+ GA LAQPG
Sbjct: 60 YVVDPQQGITVDEALLILMLSPRSYTREDVVEFHCHGGIMAVQQVLQLCVAQGARLAQPG 119
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFTLRAFLNGRLDL+QAE V L++A+S AA AALA ++G + + +R+ C++LL E
Sbjct: 120 EFTLRAFLNGRLDLTQAEGVADLVAAQSPQAAQAALAEVRGKLTQPIRQLRSACLDLLAE 179
Query: 273 IEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
+EAR+DF++++PPL+ V ++ + + V L+TA+ +LL++GL++AIVGRPNVGKS
Sbjct: 180 VEARIDFEEDLPPLDEPEVKRQLAQILESVRALLDTAHQGELLRTGLKVAIVGRPNVGKS 239
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNAWS+S+RAIVTE+ GTTRDV+E+ + V G+PV +LDTAGIR+ D VE++G+ RS
Sbjct: 240 SLLNAWSRSDRAIVTELPGTTRDVVESQLVVGGIPVQVLDTAGIRDAKDPVEQMGIARSR 299
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
+VA AD++++T+ A GWT ED L + ++ P+ILVINK D A+ +
Sbjct: 300 SVAQAADLVLLTIDAHAGWTPEDQRLYDTVKQR--------PLILVINKTDLG--AAQDS 349
Query: 453 NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEA 512
+ + V T A +G+ LE I++ V A VNQRQ L R + A
Sbjct: 350 PPLPDLKVPKVHTAAAHNEGLDILEKTILQRVQADHFTAANLEATVNQRQAAALTRARTA 409
Query: 513 LVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L ++++I ++LPLDFWTIDLR A ALG+I+G+DI+E +L IF +FCIGK
Sbjct: 410 LEEVQATIAQQLPLDFWTIDLRMAISALGEITGDDITESMLDEIFSRFCIGK 461
>gi|86606766|ref|YP_475529.1| tRNA modification GTPase TrmE [Synechococcus sp. JA-3-3Ab]
gi|123505609|sp|Q2JSU8.1|MNME_SYNJA RecName: Full=tRNA modification GTPase MnmE
gi|86555308|gb|ABD00266.1| tRNA modification GTPase TrmE [Synechococcus sp. JA-3-3Ab]
Length = 459
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 218/458 (47%), Positives = 303/458 (66%), Gaps = 21/458 (4%)
Query: 107 GAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEV 166
G++GIVRLSG A+ I +F P ++ + W SH + YG + D G +DE
Sbjct: 23 GSIGIVRLSGSRALAIAQAIFTPARR-------NAVWE--SHRLLYGWIHDEKGRRLDEA 73
Query: 167 LAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDL 226
LAV M APRSYTREDVVEL CHG + ++ L+ CL GA LAQPGEF+LRAFLNGR+DL
Sbjct: 74 LAVWMQAPRSYTREDVVELHCHGGIMVVQATLQQCLRQGARLAQPGEFSLRAFLNGRIDL 133
Query: 227 SQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPL 286
+QAE+V L++A+S AA ALAG+QG + ++R + + LL EIEARLDF++++PPL
Sbjct: 134 TQAESVADLVAARSPQAAQMALAGLQGKLGQSIRALRQELLGLLAEIEARLDFEEDLPPL 193
Query: 287 NLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIV 346
++ ++ + ++ L TA +LL++G+++AIVGRPNVGKSSLLNAWS +RAIV
Sbjct: 194 DVPAWQARLQDIQAQMQALLATAERGQLLRTGVKVAIVGRPNVGKSSLLNAWSGQDRAIV 253
Query: 347 TEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVS 406
T++ GTTRDV+E+ + V G+PV LLDTAGIR TDD VE++GVERS+ +A ADV+++ +
Sbjct: 254 TDLPGTTRDVVESQLVVRGIPVQLLDTAGIRATDDPVERLGVERSQRLAQTADVLVLVID 313
Query: 407 AVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTC 466
A GWT D+ + I+ P+ILVINK D AP+ ++ V
Sbjct: 314 AQAGWTEADAAIYASIRHR--------PLILVINKTDLAPADK---IRLPPEIAYRVPAV 362
Query: 467 AVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPL 526
A GQGI +LE A+ ++V + P ++NQRQ L + + +L ++ +++ +LPL
Sbjct: 363 AAQGQGIPELEEALEQLVTQGR-PQPNLEVSLNQRQAAALRQAQASLEQVVQAMQAQLPL 421
Query: 527 DFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
DFWTIDLR A ALGQI+GE+ISE VL IF +FCIGK
Sbjct: 422 DFWTIDLRGALHALGQITGEEISEAVLDQIFSRFCIGK 459
>gi|428772514|ref|YP_007164302.1| tRNA modification GTPase trmE [Cyanobacterium stanieri PCC 7202]
gi|428686793|gb|AFZ46653.1| tRNA modification GTPase trmE [Cyanobacterium stanieri PCC 7202]
Length = 458
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 215/472 (45%), Positives = 299/472 (63%), Gaps = 23/472 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI AI +++ G++GIVRLSG A++I ++FKP K K W+ SH V YG
Sbjct: 9 TIVAIASAVVPNQGSIGIVRLSGVNALEIAQKIFKPQGKPK--------WQ--SHQVIYG 58
Query: 154 VVLDR-HGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
V + VVDE L + M +PRS+TREDV+E CHG + +++VL CLE GA LA G
Sbjct: 59 YVKNPITEKVVDEALLIYMQSPRSFTREDVIEFHCHGGIIPVQQVLELCLEYGARLANGG 118
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EF+LRAFLNGR+DL+QAE++ +++ AKS A+ ALAG+QG + + +R +++L E
Sbjct: 119 EFSLRAFLNGRIDLTQAESIAEMVGAKSAYASQVALAGLQGKLAQPIRDMRHNLLDILAE 178
Query: 273 IEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
+EAR+DF+D++PPL+ ++ + +++ L T +LL+SGL++AIVGRPNVGKS
Sbjct: 179 VEARIDFEDDLPPLDEEQIIQDVEENLIKIKHILATKEQGELLRSGLKVAIVGRPNVGKS 238
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNAWSKS+RAIVT++ GTTRDV+E+ + V G+P+ +LDTAGIRET+D VEKIGV RS
Sbjct: 239 SLLNAWSKSDRAIVTDLPGTTRDVVESQLVVNGIPIQVLDTAGIRETEDTVEKIGVMRSL 298
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
AD+++ T+S GW SED E+ +I+ + + E
Sbjct: 299 KAVNQADLVLFTISGETGWMSEDEEIYQQIKHLNIILIINK------------IDIAKEN 346
Query: 453 NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEA 512
V T A QGI DLE AI+ V A A+NQRQ L R K A
Sbjct: 347 LTYPPEIKQIVKTAATIQQGITDLENAIINTVETGITQAQDLDIAINQRQAAALTRAKVA 406
Query: 513 LVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L +++ +I+ +LPLDFWTIDLR A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 407 LNQVQETIDNQLPLDFWTIDLRSAIQALGEITGEEVTESVLDRIFSRFCIGK 458
>gi|428220612|ref|YP_007104782.1| tRNA modification GTPase TrmE [Synechococcus sp. PCC 7502]
gi|427993952|gb|AFY72647.1| tRNA modification GTPase TrmE [Synechococcus sp. PCC 7502]
Length = 461
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 223/464 (48%), Positives = 306/464 (65%), Gaps = 27/464 (5%)
Query: 107 GAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRH---GNVV 163
G+VGIVRLSG + I +F +S + W +H + YG + +H V+
Sbjct: 19 GSVGIVRLSGSKSEVIARSLFH--------NSNNQIWE--THRILYGYI--KHPVTKEVI 66
Query: 164 DEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGR 223
DE L + M APRS+TREDV+E CHG + ++RVL CLE GA LA+ GEF+LRAFLNGR
Sbjct: 67 DESLMLIMKAPRSFTREDVIEFHCHGGIMPVQRVLNLCLEQGARLAEAGEFSLRAFLNGR 126
Query: 224 LDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEM 283
+DL+QAE++++L+ AKS AA A+A +QG + + +RAKC+++L EIEAR+DFDD++
Sbjct: 127 IDLTQAESIQELVGAKSPQAAQTAIASLQGKLAHPIRQMRAKCVDILAEIEARIDFDDDL 186
Query: 284 PPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSER 343
PLNL+ ++ + ++ + TA+ +LL+SGL+IAI GRPNVGKSSLLNAWS+++R
Sbjct: 187 VPLNLDNLLRDLQEVTDQAHTLMATADRGQLLRSGLKIAIAGRPNVGKSSLLNAWSQTDR 246
Query: 344 AIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIM 403
AIVT++ GTTRDV+++ + V G+PVT+LDTAGIR T+DIVEKIGVERS AD++++
Sbjct: 247 AIVTDLPGTTRDVVDSQLIVSGIPVTVLDTAGIRATEDIVEKIGVERSLISVKSADLVLL 306
Query: 404 TVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDC---APSASNEWNKVGNSFN 460
+ A GWT +D E+ I K T+ P+ILVINK+D P + + K
Sbjct: 307 VIDAQIGWTDQDQEIYELITDLK--TDGDHPIILVINKMDLPTYPPILPSVFEK-----K 359
Query: 461 DHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSI 520
V+T A QGI LE AI+ V I + A+NQRQ L+ +AL R+ +I
Sbjct: 360 PIVYTAAALAQGIDQLELAILNSVHQGSISSANLEVAINQRQKASLLTAVQALERVLGAI 419
Query: 521 EEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
LPLDFWTIDLR+A ALGQI+GE+I+E VL IF KFCIGK
Sbjct: 420 --ALPLDFWTIDLREAIHALGQITGEEITESVLDTIFSKFCIGK 461
>gi|1524359|emb|CAA66716.1| GTPase [Synechocystis sp. PCC 6803]
Length = 456
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 219/474 (46%), Positives = 313/474 (66%), Gaps = 26/474 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIA I T+I G++G+VRLSGP ++ I +F + G+ +W SH + YG
Sbjct: 6 TIARIATAIVPQQGSIGVVRLSGPQSLTIAKTLFD--------APGNQTWE--SHRILYG 55
Query: 154 VVLDRHGNV---VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
V RH +DE L + MLAPRSYT+EDVVE QCHG + +++VL+ CL+ GA LAQ
Sbjct: 56 HV--RHPQTKAAIDEALLLLMLAPRSYTKEDVVEFQCHGGIMPVQQVLQLCLQQGARLAQ 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEF+ RAFLNGRLDL+QAE+ +L+ A+S A ALAG+QG + + +R C+++L
Sbjct: 114 PGEFSFRAFLNGRLDLTQAESHSELVGAQSPQAGAIALAGLQGKLAQPIRDLRNTCLDIL 173
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
E+EAR+DF+D++PPL+ + + ++ + Q +E+ L TA +LL++GL++AIVG+PNVG
Sbjct: 174 AEVEARIDFEDDLPPLDEDSIRQQLQNLYQQLEDILNTAQAGELLRTGLKVAIVGQPNVG 233
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNAWS+++RAIVT++ GTTRDV+E+ + V G+P+ +LDTAGIRET D VE+IGVER
Sbjct: 234 KSSLLNAWSRTDRAIVTDLPGTTRDVVESQLVVEGIPIQVLDTAGIRETADQVEQIGVER 293
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S A AD++++TV A GWT D + +++ P+ILVINKID +
Sbjct: 294 SRKAAQQADLVLLTVDAHQGWTEADQLIYEQVKDR--------PLILVINKIDLGRADLV 345
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+ + V T A GI+ LE AI++ V + +A+NQRQ L +
Sbjct: 346 SYPP---EITNTVLTAAAANLGIEALENAIIEQVNQTNLSPQNLDFAINQRQEAVLTEAQ 402
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL +L+ ++ E+LPLDFWTIDLR A ALG+++GE ++E VL IF +FCIGK
Sbjct: 403 LALKQLQQTMAEQLPLDFWTIDLRLAMNALGEVTGETVTESVLDRIFSRFCIGK 456
>gi|254423905|ref|ZP_05037623.1| tRNA modification GTPase TrmE [Synechococcus sp. PCC 7335]
gi|196191394|gb|EDX86358.1| tRNA modification GTPase TrmE [Synechococcus sp. PCC 7335]
Length = 459
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 216/471 (45%), Positives = 306/471 (64%), Gaps = 21/471 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI AI T+I G+VGIVRLSG A+ I ++F + G W SH + YG
Sbjct: 10 TIVAIATAIVPEQGSVGIVRLSGLDAIAIAKQLFH--------APGRQPWE--SHRILYG 59
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ + +VDE L + M +PRSYTREDVVE CHG + +++VL+ CL+ GA LAQPGE
Sbjct: 60 HIHSQQ-TIVDEALLLLMESPRSYTREDVVEFHCHGGIMAVQQVLQLCLQQGARLAQPGE 118
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FTLRAFLNGRLDL+QAE+V L+ A+S AA AL GI+G + ++ +R++C+++L EI
Sbjct: 119 FTLRAFLNGRLDLTQAESVADLVGAQSPQAAQTALMGIRGKLAEVIRQLRSQCLDVLAEI 178
Query: 274 EARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSS 333
EAR+DF D++PP+N + V ++ ++ + L TA+ +LL++GL++AI+G+PNVGKSS
Sbjct: 179 EARVDFADDLPPINEDDVRSRLQSIHHQLAQVLLTADQGELLRTGLKVAIIGQPNVGKSS 238
Query: 334 LLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEA 393
LLNAWSKS+RAIVT + GTTRDV+E+ + V G+P+ +LDTAGI + VEKIG+ERS
Sbjct: 239 LLNAWSKSDRAIVTNLPGTTRDVVESQLIVGGIPIQVLDTAGIHAATNEVEKIGIERSLT 298
Query: 394 VALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWN 453
A AD++++T+ A GWT+ D L +I+ TP I+V+NKID A +
Sbjct: 299 AAQSADLVLLTIDATVGWTAADQALYEQIK--------DTPHIIVVNKIDLL--ADSHPT 348
Query: 454 KVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEAL 513
+ + V T A GI +LE AI+ + A A+NQRQ L + A+
Sbjct: 349 TLPLPHSPIVHTAAAVNHGIPELEAAILSAANAGDLTAANTDIAINQRQAAALTQADIAI 408
Query: 514 VRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+++ +I LPLDFWTIDLR A ALG+++GE+I+E +L IF +FCIGK
Sbjct: 409 AQVEQTIANALPLDFWTIDLRIAIHALGEVTGEEITESMLDEIFSRFCIGK 459
>gi|412993338|emb|CCO16871.1| tRNA modification GTPase TrmE [Bathycoccus prasinos]
Length = 524
Score = 368 bits (944), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 227/535 (42%), Positives = 306/535 (57%), Gaps = 72/535 (13%)
Query: 86 EEKAGTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRP 145
E + TI AI T I G V IVR+SG A +I +FKP K+K
Sbjct: 6 ENSSSNNDTIVAIATPIVPQLGGVSIVRISGENAREIANEIFKPTGKRKDCFQ------- 58
Query: 146 TSHVVEYGVVLDRH-GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEA 204
SHVV +G +++ + G V+DEVL +PML PRSYT EDVVE+ HG VC RVL ACL
Sbjct: 59 -SHVVLHGTIVNNNDGEVIDEVLLLPMLKPRSYTAEDVVEIHTHGGSVCAARVLDACLRT 117
Query: 205 GAT-LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVR 263
A LA+ GEFT+RAFLNGRLDLSQAE V LI A++ AA AL ++GG S+ V R
Sbjct: 118 NACRLARNGEFTMRAFLNGRLDLSQAEAVHSLIRAETDEAAVQALKTLRGGLSNDVKEAR 177
Query: 264 AKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
+ I++L E+EARLDFDDEM PL+++ + ++ + +AL+T+ + L G +AI
Sbjct: 178 RRMIDVLAELEARLDFDDEMVPLDVDKIAKEVDEAKEVALSALKTSQKNASLSVGCTLAI 237
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGI------- 376
VGRPN GKS LLN W+KSER+IVT++ GTTRDV+EA+V V GV VTLLDTAGI
Sbjct: 238 VGRPNAGKSRLLNRWTKSERSIVTDVEGTTRDVVEAAVNVSGVKVTLLDTAGIRGGSSRS 297
Query: 377 -------------------RETD--DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSED 415
ET+ D VE +G+ERS+ A GAD+ + A GW D
Sbjct: 298 SSNSSNSNGSSGSDDSNKEEETEIIDKVEAVGIERSKIAARGADLCAFVLDASRGWERAD 357
Query: 416 SELLNRIQSNKKSTESSTPMILVINKID-------------------CAPSASN-----E 451
+ +++ + + +I V NK+D P +N E
Sbjct: 358 ETVW------REALDVAKNVIFVANKMDDITENASLIEEMKSDPSGKMKPFLTNQLRVPE 411
Query: 452 WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV--GLHQIPAGGRRWAVNQRQCEQLMRT 509
+ + N+ VF A G GI+DLE+ + GL + G + V+ RQ E L
Sbjct: 412 YVLDKCNLNNVVFLSAKEGFGIEDLESKVSNAFESGLSSVE--GDAYFVSSRQSEALKHA 469
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
EA+ R+K S +LP+DFWTIDLR+AA+ALG+++GED+SE++L IF +FCIGK
Sbjct: 470 VEAMERVKESALNDLPVDFWTIDLREAAVALGEVTGEDVSEDILGTIFERFCIGK 524
>gi|427704018|ref|YP_007047240.1| tRNA modification GTPase TrmE [Cyanobium gracile PCC 6307]
gi|427347186|gb|AFY29899.1| tRNA modification GTPase TrmE [Cyanobium gracile PCC 6307]
Length = 469
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 207/456 (45%), Positives = 285/456 (62%), Gaps = 21/456 (4%)
Query: 111 IVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLD-RHGNVVDEVLAV 169
IVRLSGP A I R+F+ + G W SH V YG V+D G VDE L +
Sbjct: 33 IVRLSGPAAEAIGRRLFE--------APGPQVW--ESHRVLYGHVVDPADGRRVDEALLL 82
Query: 170 PMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQA 229
PM APRS+TREDVVE CHG V +RRVL L AGA LA PGEF+ RAFLNGRLDL++A
Sbjct: 83 PMRAPRSFTREDVVEFHCHGGLVAVRRVLELVLAAGARLAGPGEFSQRAFLNGRLDLTRA 142
Query: 230 ENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLN 289
E V ++I+A+S AA+ A+AG+ GG ++ +R + ++ L E+EAR+DF++++PPL+
Sbjct: 143 EAVAEMIAARSQRAAELAMAGLDGGLQRRISGLRERLLDQLAELEARVDFEEDLPPLDGT 202
Query: 290 LVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEI 349
LV ++ A+ ++E + + +LL+ GL++AIVGRPNVGKSSLLN S+ ERAIVT++
Sbjct: 203 LVRAELEAVRGELERLVAESRQGELLREGLRVAIVGRPNVGKSSLLNLLSRRERAIVTDL 262
Query: 350 AGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVD 409
GTTRD++E+ + + GVP+TLLDTAGIR TDD VE++G+ERS GAD +++ V
Sbjct: 263 PGTTRDLLESDLVLDGVPLTLLDTAGIRATDDRVERLGIERSRQALAGADAVLLLFDRVA 322
Query: 410 GWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFT-CAV 468
GW++ D EL ++ P++LV NK D P + + T A+
Sbjct: 323 GWSAADQEL-------RELVPEGVPLLLVGNKCDALPPGAAPTGVPSAPREAPLVTISAL 375
Query: 469 TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDF 528
TG G DL A++ + G + G + A+N RQ E +L R + +LP DF
Sbjct: 376 TGAGRDDLVAALLGLCGAGDVQ--GLQVALNGRQRELAAAAATSLERTLETAALDLPWDF 433
Query: 529 WTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
WTIDLR A LG I+GE++SE VL IF +FCIGK
Sbjct: 434 WTIDLRGAIAGLGAITGEEVSEAVLERIFSRFCIGK 469
>gi|435855276|ref|YP_007316595.1| tRNA modification GTPase TrmE [Halobacteroides halobius DSM 5150]
gi|433671687|gb|AGB42502.1| tRNA modification GTPase TrmE [Halobacteroides halobius DSM 5150]
Length = 461
Score = 359 bits (921), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 200/474 (42%), Positives = 294/474 (62%), Gaps = 19/474 (4%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
TIAAI TS+ G +GIVR+SGP A++I ++FK ++ K S T+H Y
Sbjct: 5 DTIAAISTSVN--EGGIGIVRISGPKAIEIADKIFKSIQNKSLADVDS----YTAH---Y 55
Query: 153 GVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
G ++D + ++DEV+ + M AP++YT ED+VE+ CHG V LR++L L+ GA LA+P
Sbjct: 56 GNIIDPKTEQLIDEVITLVMKAPKTYTTEDIVEIDCHGGTVILRKILDVVLQQGARLAEP 115
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DLSQAE V LI +K+ A + AL ++GG + V +R + LL
Sbjct: 116 GEFTKRAFLNGRMDLSQAEAVIDLIRSKTEANMEVALDHLEGGLAKKVNDIRQDLVSLLA 175
Query: 272 EIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+EA +DF +DE+ N + ++I+ + V+N LET+ K+L+ G++ AI+GRPNVG
Sbjct: 176 HLEATIDFPEDEIDDFESNELDNRINQVLNKVDNLLETSKRGKILKEGIETAIIGRPNVG 235
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNA + +RAIVTE+ GTTRDVIE + + G+P+ ++DTAGIRE D VEKIG+ER
Sbjct: 236 KSSLLNALLREKRAIVTEVPGTTRDVIEEVINIGGIPIKIIDTAGIREAKDQVEKIGIER 295
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
SE AD+I++ + + ED +L+ I+ NK++ +++ NK+D S
Sbjct: 296 SEKFLDKADLILLVLDMSRELSKEDHDLIAAIK-NKQA-------VIIANKLDLEAEVSI 347
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+ K S V T A+ QGI LE I +V + A + N R L R K
Sbjct: 348 DEIKEIASDKPLVKTAAIDNQGIDKLEKVISDLVFSGDVEAQSQTLITNMRHKNALDRAK 407
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L+ +K + E LP DF TIDLR+A A+G+I+G+ + E+++ IF FC+GK
Sbjct: 408 QSLLDVKETFERGLPNDFITIDLREALEAVGEITGDTLGEDIIDQIFADFCLGK 461
>gi|148243337|ref|YP_001228494.1| tRNA modification GTPase TrmE [Synechococcus sp. RCC307]
gi|205829180|sp|A5GW82.1|MNME_SYNR3 RecName: Full=tRNA modification GTPase MnmE
gi|147851647|emb|CAK29141.1| tRNA modification GTPase [Synechococcus sp. RCC307]
Length = 453
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 198/455 (43%), Positives = 284/455 (62%), Gaps = 28/455 (6%)
Query: 111 IVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLD-RHGNVVDEVLAV 169
IVR+SGP A I ++F+P K+ SW SH V YG V D +G+VVDEVL +
Sbjct: 26 IVRISGPQAEAIGRQLFQPAGKQ--------SWE--SHRVLYGHVNDPANGDVVDEVLLL 75
Query: 170 PMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQA 229
M APRS+TRE VVE HG V ++R+L L AGA A PGEF+ RAFLNGRLDL++A
Sbjct: 76 LMRAPRSFTRETVVEFHGHGGLVAVQRLLELVLAAGARRALPGEFSQRAFLNGRLDLTRA 135
Query: 230 ENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLN 289
E + +L+SA+S AA+ A+AG+ GG + ++R + ++ L E+EAR+DF++++P L+
Sbjct: 136 EAISELVSARSRRAAELAMAGLDGGLQQRIEALRDQLLDQLCELEARVDFEEDLPSLDGA 195
Query: 290 LVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEI 349
V + + Q ++ + +LL+ GL++AI+GRPNVGKSSLLNA S ERAIVT++
Sbjct: 196 AVCTALRDVQQALDQLVLDGQQAQLLRDGLRVAIIGRPNVGKSSLLNALSGHERAIVTDL 255
Query: 350 AGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVD 409
GTTRD+++ + + GVP+TLLDTAGIR T D VE++G+ERS A AD +++
Sbjct: 256 PGTTRDLLDYDLVLQGVPITLLDTAGIRSTADRVEQLGIERSRAAFASADAVVLLYDLSR 315
Query: 410 GWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVT 469
GW+ +DS L N + TP+++V NK D A + + A +
Sbjct: 316 GWSPDDSALRNEV-------PDGTPLLVVGNKSDLAAEPAT---------TQGLAISARS 359
Query: 470 GQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFW 529
G G+ +L +A++K+ GL G A+NQRQC+ AL R + + + LP DFW
Sbjct: 360 GLGLAELSSALLKLCGLSG-EGQGLLLALNQRQCDLAAAASAALGRSQQAARDGLPWDFW 418
Query: 530 TIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
TIDLR+A ALG+I+G +I+E VL +F +FCIGK
Sbjct: 419 TIDLREAIRALGEITGAEITEAVLDRVFSRFCIGK 453
>gi|302393075|ref|YP_003828895.1| tRNA modification GTPase trmE [Acetohalobium arabaticum DSM 5501]
gi|302205152|gb|ADL13830.1| tRNA modification GTPase trmE [Acetohalobium arabaticum DSM 5501]
Length = 463
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 191/474 (40%), Positives = 298/474 (62%), Gaps = 17/474 (3%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
TIAAI T++G G +GIVR+SGP A++I ++FK ++ KK + ++ T+H Y
Sbjct: 5 DTIAAISTAVG--EGGIGIVRISGPEAIEIADKIFKSYQQPDKKLNKVDTY--TAH---Y 57
Query: 153 GVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
G ++ V+DEV+++ M AP++YT+EDVVE+ CHG V L+++L L+ GA LA P
Sbjct: 58 GHIIKPETEQVLDEVISLVMKAPKTYTKEDVVEINCHGGMVPLQKILELVLDVGARLADP 117
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DLSQAE + +I++++ A +AA+ ++GG S + ++ K + LL
Sbjct: 118 GEFTKRAFLNGRIDLSQAEAIMDVINSQTEAGLEAAMDQLEGGLSDQINNISQKILRLLA 177
Query: 272 EIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+EA +DF +DE+ N + ++ + ++E+ L T+ ++++ G+Q AI+G+PNVG
Sbjct: 178 NLEASIDFPEDEIEDFNSEELEKRVIEILSEIEDLLATSKQGRIVKEGIQTAIIGKPNVG 237
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNA + RAIVTE+ GTTRDVIE + + G+P+ ++DTAGIRE ++ VEKIG+E+
Sbjct: 238 KSSLLNALLRENRAIVTEVPGTTRDVIEEVINIDGIPLKIIDTAGIREAENEVEKIGIEK 297
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
SE AD++++ + A G T ED +++ + K T I+V+NK D P +
Sbjct: 298 SEKFLKRADLVLLVLDAHCGITDEDRKIIGLAEG--KDT------IIVVNKTDLEPKLAV 349
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
E K V T A G GI++LE I +V QI + + N R E +
Sbjct: 350 EELKEELDMEAVVETSATEGIGIKELEELISDMVFGGQIKSTDQTLITNLRHKEAIEDAY 409
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
E + R+K ++E++LP DF TIDL+ A LG+I+G+ + E+++ IF FC+GK
Sbjct: 410 EDMNRVKETVEQDLPADFVTIDLKSALEKLGKITGDTVDEDIIDRIFADFCLGK 463
>gi|124024977|ref|YP_001014093.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. NATL1A]
gi|166234805|sp|A2C018.1|MNME_PROM1 RecName: Full=tRNA modification GTPase MnmE
gi|123960045|gb|ABM74828.1| putative thiophen / furan oxidation protein [Prochlorococcus
marinus str. NATL1A]
Length = 464
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 195/479 (40%), Positives = 293/479 (61%), Gaps = 26/479 (5%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
T TIAAI T++ G++ +R+SG A++ K G W ++H V
Sbjct: 7 TEDTIAAIATAVSPGQGSIAAIRISGSSAIE--------TSKNIVDVPGIQDW--STHKV 56
Query: 151 EYGVVLDRH-GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLE-AGATL 208
YG V + + +DEVL + M PRS+T EDVVE+ CHG + ++++L L
Sbjct: 57 LYGHVTEENRKKYIDEVLILVMKGPRSFTGEDVVEIHCHGGIIPVQKILERILAFPSVRR 116
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEF+ RA LNGRL L+QAE++ +L+SA+S AA+ A+ GI+G + + S+R + IE
Sbjct: 117 AEPGEFSQRAVLNGRLSLTQAESISELVSARSRKAAELAINGIEGNIQTTIQSIRKRLIE 176
Query: 269 LLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
LTEIEAR+DF++++P L+ V ++I A+ +D+ ++ A ++SGL++A+ G+PN
Sbjct: 177 QLTEIEARIDFEEDLPLLDEKHVKNEIVAIKKDLNELIDNAKRGSWVRSGLKVALAGKPN 236
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSL+N SK E+AIVT++ GTTRD++E+ + + G+PVT +DTAG+R+T DI+EKIG+
Sbjct: 237 VGKSSLMNRLSKQEKAIVTDLPGTTRDILESEIVLEGIPVTFIDTAGLRDTKDIIEKIGI 296
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
R++ + AD+II+ GWT+ED +L ++ N P+++V NK D
Sbjct: 297 SRTKKTLIHADLIILIFDYSSGWTNEDESILKQLPVN-------IPLLIVGNKSDLMNDQ 349
Query: 449 SNEWNKVGNSF---NDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
S E KV + V A TG G DL ++K G Q G A+N+RQ +
Sbjct: 350 SFE--KVPKYILKKENLVILSAKTGNGEDDLINYLLKKCGSSQ--THGLDIALNERQLDL 405
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
T E+L + +E+LP DFWTIDLR A LG+++GED++E +L NIF KFCIGK
Sbjct: 406 AKSTTESLENINKVFDEKLPWDFWTIDLRQAINYLGELTGEDLTENLLDNIFSKFCIGK 464
>gi|78213961|ref|YP_382740.1| tRNA modification GTPase TrmE [Synechococcus sp. CC9605]
gi|123577422|sp|Q3AGU7.1|MNME_SYNSC RecName: Full=tRNA modification GTPase MnmE
gi|78198420|gb|ABB36185.1| tRNA modification GTPase TrmE [Synechococcus sp. CC9605]
Length = 450
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 200/461 (43%), Positives = 287/461 (62%), Gaps = 32/461 (6%)
Query: 107 GAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEV 166
G + ++RLSGP A + + G W SH V YG V+D G +DEV
Sbjct: 19 GGIAVIRLSGPAA--------EATGRSVVHCPGRQEW--GSHRVVYGHVIDSEGRRLDEV 68
Query: 167 LAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACL-EAGATLAQPGEFTLRAFLNGRLD 225
L + M PRS+T EDVVE+ CHG + ++RVL L + G AQPGEF+ RA LNGRLD
Sbjct: 69 LLLLMRGPRSFTGEDVVEIHCHGGVIAVQRVLEKVLRQPGVRRAQPGEFSQRAVLNGRLD 128
Query: 226 LSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPP 285
L++AE V +L++A+S AA+ A+AG+ GG + +T +R + ++ LTE+EAR+DF++++PP
Sbjct: 129 LTRAEAVSELVAARSRRAAELAMAGLDGGIQAEITVLRERLLDQLTELEARVDFEEDLPP 188
Query: 286 LNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAI 345
L+ ++ ++ A+ +++ + L+ GL++A+VGRPNVGKSSLLN S+ ERAI
Sbjct: 189 LDGEALLQQLQAVRLELQQLVRDGERGDALRQGLRVALVGRPNVGKSSLLNRLSRRERAI 248
Query: 346 VTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTV 405
VT++ GTTRD++E+ + + GVP+TLLDTAGIR TDD VE++G+ RSE ADV+++ +
Sbjct: 249 VTDLPGTTRDLLESEIVLEGVPITLLDTAGIRSTDDAVEQLGIARSEQALATADVVLLVL 308
Query: 406 SAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFT 465
GWT+ED+ LL RI + P ILV NK D A + V S
Sbjct: 309 DGHAGWTAEDAALLARIPAQ-------IPRILVANKADLPAGAFPQPVDVQLS------- 354
Query: 466 CAVTGQGIQDLETAIMKIVGLHQIPAG--GRRWAVNQRQCEQLMRTKEALVRLKSSIEEE 523
A+ G G DL A+++ G AG G A+NQRQ + R EAL R + ++
Sbjct: 355 -ALEGMGEADLVQALLERCG----AAGTDGMLVALNQRQRDLAARAAEALARSQEVAAQQ 409
Query: 524 LPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
LP DFWTIDLR+A ALG+I+GE+++E VL +F +FCIGK
Sbjct: 410 LPWDFWTIDLREAIRALGEITGEELTEAVLDRVFSRFCIGK 450
>gi|72383392|ref|YP_292747.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. NATL2A]
gi|123620473|sp|Q46HI4.1|MNME_PROMT RecName: Full=tRNA modification GTPase MnmE
gi|72003242|gb|AAZ59044.1| tRNA modification GTPase trmE [Prochlorococcus marinus str. NATL2A]
Length = 464
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 194/479 (40%), Positives = 293/479 (61%), Gaps = 26/479 (5%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
T TIAAI T++ G++ +R+SG A++ K G W ++H V
Sbjct: 7 TEDTIAAIATAVSPGQGSIAAIRISGSSAIE--------TSKNIVDVPGIQDW--STHKV 56
Query: 151 EYGVVLDRH-GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLE-AGATL 208
YG V + + +DEVL + M PRS+T EDVVE+ CHG + ++++L L
Sbjct: 57 LYGHVTEENRKKYIDEVLILVMKGPRSFTGEDVVEIHCHGGIIPVQKILERILAFPSVRR 116
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEF+ RA LNGRL L+QAE++ +L+SA+S AA+ A+ GI+G + + S+R + IE
Sbjct: 117 AEPGEFSQRAVLNGRLSLTQAESISELVSARSRKAAELAINGIEGNIQTTIQSIRKRLIE 176
Query: 269 LLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
LTEIEAR+DF++++P L+ V ++I A+ +D+ ++ A ++SGL++A+ G+PN
Sbjct: 177 QLTEIEARIDFEEDLPLLDEKHVKNEIVAIKKDLNELIDNAKRGSWVRSGLKVALTGKPN 236
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSL+N SK E+AIVT++ GTTRD++E+ + + G+PVT +DTAG+R+T DI+EKIG+
Sbjct: 237 VGKSSLMNRLSKQEKAIVTDLPGTTRDILESEIILEGIPVTFIDTAGLRDTKDIIEKIGI 296
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
R++ + AD+II+ GWT+ED +L ++ N P+++V NK D
Sbjct: 297 SRTKKTLIHADLIILIFDYSSGWTNEDESILKQLPIN-------IPLLIVGNKSDLTNDQ 349
Query: 449 SNEWNKVGNSF---NDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
S E KV + V A TG G DL ++K G Q G A+N+RQ +
Sbjct: 350 SFE--KVPKYILKKENLVIISAKTGNGEDDLINYLLKKCGSSQ--THGLDIALNERQLDL 405
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
T ++L + +E+LP DFWTIDLR A LG+++GED++E +L NIF KFCIGK
Sbjct: 406 AKSTMKSLENINKVFDEKLPWDFWTIDLRQAINYLGELTGEDLTESLLDNIFSKFCIGK 464
>gi|335039029|ref|ZP_08532217.1| tRNA modification GTPase mnmE [Caldalkalibacillus thermarum TA2.A1]
gi|334181066|gb|EGL83643.1| tRNA modification GTPase mnmE [Caldalkalibacillus thermarum TA2.A1]
Length = 458
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 197/475 (41%), Positives = 288/475 (60%), Gaps = 21/475 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G G + IVR+SGP A+ +V ++++ +KK S+ SH +
Sbjct: 3 FDTIAAIATPMG--EGGIAIVRVSGPEAIAVVDKLYRG---RKKLSTVD------SHTIH 51
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G ++EVL M APR+YTREDVVE+ CHG V +RRVL L+ GA LA+
Sbjct: 52 YGHLVDPQTGERIEEVLVTVMRAPRTYTREDVVEVNCHGGLVSVRRVLNYILKYGARLAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A A+ ++G S L+ +R + IE L
Sbjct: 112 PGEFTKRAFLNGRIDLSQAEAVIDLIRAKTDRAMKNAMKQVEGRLSKLIKRLRQELIETL 171
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IE +D+ + ++ + + +K + +++E+ L TA K+L+ GL+ AI+GRPNV
Sbjct: 172 AHIEVTIDYPEHDVEEVTQQFLREKCEQVKKEIEHLLATAEQGKILREGLKTAIIGRPNV 231
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA + RAIVT+I GTTRDV+E V V GVP+ L+DTAGIRET+D+VE+IGVE
Sbjct: 232 GKSSLLNALAHENRAIVTDIPGTTRDVLEEYVNVRGVPLQLIDTAGIRETEDVVERIGVE 291
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS V AD+I++ ++ + +T ED LL+ ++ K IL++NK D P
Sbjct: 292 RSRQVLKEADLILLVLNIAEPFTEEDQALLDLVKDMK--------TILIVNKTDLEPKLD 343
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+ K + +G+ +LE AI + I AG + N R L
Sbjct: 344 TDQLKERYPHLPLIKMSIKEEKGLDELEQAIADLYFKGDIEAGDMTYVSNSRHIALLNEA 403
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+++ +++E LP+D ID+R A LG+I G+++SE ++ +F +FC+GK
Sbjct: 404 KQSIEDALAALEMGLPVDVVQIDIRKAWEKLGEIIGDNVSESLIDQLFSQFCLGK 458
>gi|159902748|ref|YP_001550092.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
9211]
gi|159887924|gb|ABX08138.1| putative thiophen / furan oxidation protein [Prochlorococcus
marinus str. MIT 9211]
Length = 455
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 198/477 (41%), Positives = 290/477 (60%), Gaps = 31/477 (6%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
T TIAAI +++ G V ++R+SG R + K+ G W +SH +
Sbjct: 7 TEETIAAIASAVSPGQGGVAVIRISG--------RSAQETCKQIVHIPGDQIW--SSHRI 56
Query: 151 EYGVVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEA-GATL 208
YG V+++ +DEVL + M APRS+T EDVVE+ CHG + ++R+L LE
Sbjct: 57 VYGHVIEKKTQKHIDEVLILIMEAPRSFTGEDVVEIHCHGGLISVQRILNQILEQPDVRR 116
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A PGEF+ RA LNGRLDL QAE + LISAKS AA+ A+AG+ G + + S+R K ++
Sbjct: 117 ALPGEFSQRAVLNGRLDLIQAEAINDLISAKSQKAAELAMAGVDGDITQRINSLRDKLLD 176
Query: 269 LLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
L+EIEAR+DF+D++PPLN ++ + ++ +++ + A + ++GL+IA++G PN
Sbjct: 177 QLSEIEARIDFEDDLPPLNKQALLADLIKINNELQQLVIDAKQGCIFRNGLKIALIGLPN 236
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSS+LN SK ERAIVT + GTTRD++E+ + + G+P+TLLDTAGIR T+D VEKIGV
Sbjct: 237 VGKSSVLNRLSKRERAIVTALPGTTRDLLESEIILEGIPITLLDTAGIRSTNDEVEKIGV 296
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
+S+ + AD+++ GWT+ D +L ++I P +L+ NK D
Sbjct: 297 AKSKNALMTADIVLFIFDMSIGWTTADQDLFDQI-------PKQMPTLLIGNKADI---- 345
Query: 449 SNEWNKVGNSFND-HVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
KV N + A+TGQG +L A++KI GLH+ G A+N+RQ + +
Sbjct: 346 -----KVQQDTNQAEIIFSALTGQGENNLIQALLKICGLHE--THGIEIALNERQLDLVN 398
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+AL + +ELP DFWTIDLRDA LG+++G +ISE +L IF +FCIGK
Sbjct: 399 AASKALGKTLEVTTQELPWDFWTIDLRDAIQKLGELTGHEISEALLDRIFSRFCIGK 455
>gi|33866852|ref|NP_898411.1| tRNA modification GTPase TrmE [Synechococcus sp. WH 8102]
gi|46577381|sp|Q7U3V6.1|MNME_SYNPX RecName: Full=tRNA modification GTPase MnmE
gi|33639453|emb|CAE08837.1| putative thiophen / furan oxidation protein [Synechococcus sp. WH
8102]
Length = 450
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 201/461 (43%), Positives = 288/461 (62%), Gaps = 32/461 (6%)
Query: 107 GAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEV 166
G + +VR+SGP A + GR V ++ GS H V YG V+D G +DEV
Sbjct: 19 GGIAVVRVSGP-AAEATGRSV--VHCPGRQVCGS-------HRVMYGHVIDGEGRRLDEV 68
Query: 167 LAVPMLAPRSYTREDVVELQCHGSEVCLRRVL-RACLEAGATLAQPGEFTLRAFLNGRLD 225
L + M PRS+T EDVVE+ CHG V +++VL R G A PGEF+ RA LNGRLD
Sbjct: 69 LLLLMRGPRSFTGEDVVEIHCHGGVVAVQQVLERVLAHPGVRRALPGEFSQRAVLNGRLD 128
Query: 226 LSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPP 285
L++AE V +L++A+S AA+ A+AG+ GG + +T++R + ++ LTE+EAR+DF++++PP
Sbjct: 129 LTRAEAVSELVAARSRRAAELAMAGLDGGIQAKITALRERLLDQLTELEARVDFEEDLPP 188
Query: 286 LNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAI 345
L+ + ++D + + Q + + L+SGL++A+VGRPNVGKSSLLN S+ ERAI
Sbjct: 189 LDGDALLDGLQQVRQALLTLVADGERADALRSGLRVALVGRPNVGKSSLLNRLSRRERAI 248
Query: 346 VTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTV 405
VTE+ GTTRD++E+ + + GVP+TLLDTAGIR TDD VE++G+ RSE ADV+++ +
Sbjct: 249 VTELPGTTRDLLESEIVLEGVPITLLDTAGIRSTDDAVEQLGIARSEEALATADVVLLVL 308
Query: 406 SAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFT 465
GWT+ED+ LL RI + P ILV NK D A + V S
Sbjct: 309 DGHAGWTAEDAALLARIPEH-------IPRILVANKADLPAGALPQPVDVQLS------- 354
Query: 466 CAVTGQGIQDLETAIMKIVGLHQIPAG--GRRWAVNQRQCEQLMRTKEALVRLKSSIEEE 523
A+ G G +DL A+++ G AG G A+N+RQ + AL R + ++
Sbjct: 355 -ALEGTGEEDLVQALLERCG----AAGTEGVLLALNERQRDLAATAAAALGRSQEVAAQQ 409
Query: 524 LPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
LP DFWTIDLR+A ALG+I+GE+++E VL +F +FCIGK
Sbjct: 410 LPWDFWTIDLREAIRALGEITGEELTEAVLDRVFSRFCIGK 450
>gi|33864338|ref|NP_895898.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
9313]
gi|46577389|sp|Q7V491.1|MNME_PROMM RecName: Full=tRNA modification GTPase MnmE
gi|33641118|emb|CAE22248.1| putative thiophen / furan oxidation protein [Prochlorococcus
marinus str. MIT 9313]
Length = 470
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 202/466 (43%), Positives = 292/466 (62%), Gaps = 27/466 (5%)
Query: 107 GAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGN-VVDE 165
G + +VRLSGP A ++VGR + G W SH V YG V+D G +DE
Sbjct: 24 GGIAVVRLSGP-AAEVVGRSVVSI-------PGQQLW--VSHRVLYGHVMDESGKERIDE 73
Query: 166 VLAVPMLAPRSYTREDVVELQCHGSEVCLRRVL-RACLEAGATLAQPGEFTLRAFLNGRL 224
VL + M PRS+T EDVVE+ CHG + ++RVL R + A PGEF+ RA LNGRL
Sbjct: 74 VLVLLMKGPRSFTGEDVVEIHCHGGLMAVQRVLERVLAQPHVRRALPGEFSQRAVLNGRL 133
Query: 225 DLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMP 284
DL+QAE + +L++A+S AA A+ G+ GG +TS+R + ++ L+E+EAR+DF++++P
Sbjct: 134 DLTQAEAISELVAARSRRAAQLAMTGVDGGIQRRITSLRERLLDQLSELEARVDFEEDLP 193
Query: 285 PLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERA 344
PL+ ++ ++ + +++E +E A +L+ GLQ+A+VGRPNVGKSSLLN S+ ERA
Sbjct: 194 PLDGAELLLELQCVRRELEQLVEDAKRGDVLRQGLQVALVGRPNVGKSSLLNRLSRRERA 253
Query: 345 IVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMT 404
IVT++ GTTRDV+E+ + + GVP+TL+DTAGIR T D +E++G++RS ADV ++
Sbjct: 254 IVTDLPGTTRDVLESEIVLEGVPITLVDTAGIRATQDALEQLGIDRSHQALAAADVAVLV 313
Query: 405 VSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP---SASNEWNKVGNSFND 461
GWT++D+ LL +I + P +LV NK D P +AS +GN +
Sbjct: 314 FDLSLGWTADDAALLAQIPDD-------LPRLLVGNKADLQPASMAASLMVASLGNEVDG 366
Query: 462 H---VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKS 518
V A+TGQG + L A++K G + A G A+NQRQ + AL R +
Sbjct: 367 KTVDVMLSALTGQGEEALIKAVLKTCGASE--AQGLVVALNQRQQDLAAAAAIALARTQE 424
Query: 519 SIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E +LP DFWTIDLR A +LG+I+GE+I+E VL IF +FCIGK
Sbjct: 425 AAEHQLPWDFWTIDLRQAISSLGEITGEEITEAVLDRIFSRFCIGK 470
>gi|408357770|ref|YP_006846301.1| tRNA modification GTPase MnmE [Amphibacillus xylanus NBRC 15112]
gi|407728541|dbj|BAM48539.1| tRNA modification GTPase MnmE [Amphibacillus xylanus NBRC 15112]
Length = 458
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 197/478 (41%), Positives = 285/478 (59%), Gaps = 27/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG A++IV ++F SGS SH +
Sbjct: 3 FDTIAAISTPLG--EGAIGIVRLSGKDAINIVNQIF----------SGSDLNEVNSHTIH 50
Query: 152 YGVVLDRH-GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D H N+++EV+ M AP+++TREDVVE+ CHG + R+L LE GA LA+
Sbjct: 51 YGKMIDPHTNNMIEEVMVSVMKAPKTFTREDVVEINCHGGIASVNRLLELVLELGARLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A D AL + G S L+ +R IE +
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMDVALKQLDGKLSKLIQRLRQDLIETV 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + +++++K + Q++E L A K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTKSVLLEKTTDVYQEIERLLTMAKQGKILREGISTAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRETDD+VEKIGV
Sbjct: 231 VGKSSLLNTLVQENKAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETDDLVEKIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD++++ ++ + T +D +L + +I++INK D
Sbjct: 291 ERSRQALKEADLVLLVLNNNEPLTDQDRQLF--------ELTNDLELIVLINKTDLEERL 342
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ N+V DH V T + QGI DLE AI K+ Q+ + + N R + L
Sbjct: 343 --DKNEVEKLAGDHPVVSTSLIEEQGIDDLEEAIAKLFFEGQLESTDVSYVSNARHIQLL 400
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ AL +++I+ ++PLD ID+ A LG+I G+ + + ++ +F +FC+GK
Sbjct: 401 KQALTALEEAQNAIDMDMPLDLIQIDVTRAWRILGEIVGDTVHDSLIDQLFSQFCLGK 458
>gi|260434789|ref|ZP_05788759.1| tRNA modification GTPase TrmE [Synechococcus sp. WH 8109]
gi|260412663|gb|EEX05959.1| tRNA modification GTPase TrmE [Synechococcus sp. WH 8109]
Length = 450
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 197/461 (42%), Positives = 282/461 (61%), Gaps = 32/461 (6%)
Query: 107 GAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEV 166
G + ++RLSGP A + + G W SH V YG V+D G +DEV
Sbjct: 19 GGIAVIRLSGPAA--------EATGRSVVHCPGRQEW--GSHRVVYGHVMDGEGRRLDEV 68
Query: 167 LAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACL-EAGATLAQPGEFTLRAFLNGRLD 225
L + M PRS+T EDVVE+ CHG + ++RVL L + G A PGEF+ RA LNGRLD
Sbjct: 69 LLLLMRGPRSFTGEDVVEIHCHGGVIAVQRVLEQVLRQPGVRRALPGEFSQRAVLNGRLD 128
Query: 226 LSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPP 285
L++AE V +L++A+S AA+ A+AG+ GG + +T++R + ++ LTE+EAR+DF++++PP
Sbjct: 129 LTRAEAVSELVAARSRRAAELAIAGLDGGIQAQITALRERLLDQLTELEARVDFEEDLPP 188
Query: 286 LNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAI 345
L+ + ++ A+ +++ + L+ GL++A+VGRPNVGKSSLLN S+ ERAI
Sbjct: 189 LDGEALQQQLQAVRLELQQLVRDGERGDALRKGLRVALVGRPNVGKSSLLNRLSRRERAI 248
Query: 346 VTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTV 405
VT++ GTTRD++E+ + + GVP+TLLDTAGIR TDD VE++G+ RSE ADV+++ +
Sbjct: 249 VTDLPGTTRDLLESEIALEGVPITLLDTAGIRSTDDAVERLGIARSEEALATADVVLLVL 308
Query: 406 SAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFT 465
GWTSED+ LL RI P ILV NK D + V S
Sbjct: 309 DGHAGWTSEDAALLARIPEQ-------IPRILVANKADLPAGTFPQPVDVQLS------- 354
Query: 466 CAVTGQGIQDLETAIMKIVGLHQIPAG--GRRWAVNQRQCEQLMRTKEALVRLKSSIEEE 523
A+ G G DL +++ G AG G A+NQRQ + + EAL + ++
Sbjct: 355 -ALEGTGEADLVQVLLERCG----AAGTEGVLLALNQRQRDLAAQAAEALACSQEVAAQQ 409
Query: 524 LPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
LP DFWTIDLR+A ALG+I+GE+I+E VL +F +FCIGK
Sbjct: 410 LPWDFWTIDLREAIRALGEITGEEITEAVLDRVFSRFCIGK 450
>gi|239828707|ref|YP_002951331.1| tRNA modification GTPase TrmE [Geobacillus sp. WCH70]
gi|239809000|gb|ACS26065.1| tRNA modification GTPase TrmE [Geobacillus sp. WCH70]
Length = 461
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 200/479 (41%), Positives = 283/479 (59%), Gaps = 26/479 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG A+ I R+F+ K+ K SH +
Sbjct: 3 FDTIAAISTPMG--EGAIAIVRLSGDEAIAIADRIFQSPSGKRLKDV-------PSHTIH 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V+EV+ M AP+++TREDVVE+ CHG V + RVL+ L GA LA+
Sbjct: 54 YGHIVDPKSGQTVEEVMVSVMRAPKTFTREDVVEINCHGGLVSVNRVLQLVLTNGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL ++G S L+ +R +E L
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVIDLIRAKTDRAMNVALQQMEGRLSKLIRELRQTILETL 173
Query: 271 TEIEARLDF---DD--EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVG 325
+E +D+ DD EM P +L+M+K + + +E L+TA K+L+ GL I+G
Sbjct: 174 AHVEVNIDYPEYDDVEEMTP---HLLMEKAQYVREQIEKLLQTAQQGKILREGLATVIIG 230
Query: 326 RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEK 385
RPNVGKSSLLNA +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+D+VE+
Sbjct: 231 RPNVGKSSLLNALVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDVVER 290
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445
IGVERS + AD+I++ ++ + T ED +L ++ I+++NK D
Sbjct: 291 IGVERSRQMLKEADLILLVLNYHEPLTEEDEKLFEMVK--------GMDFIVIVNKTDLP 342
Query: 446 PSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+ + K + T + +GI+DLETAI ++ + AG + N R
Sbjct: 343 KNIDMDRVKQLADGRPIITTSLLQEKGIEDLETAISEMFFSGSVEAGDLTYVSNSRHIAL 402
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + K+A+ S IE +P+D IDL A LG+I G+ + E ++ +F +FC+GK
Sbjct: 403 LHQAKKAIEDAISGIESGMPVDLVQIDLTKAWELLGEIIGDTVHESLIDQLFSQFCLGK 461
>gi|319651095|ref|ZP_08005229.1| TRNA modification GTPase [Bacillus sp. 2_A_57_CT2]
gi|317397265|gb|EFV77969.1| TRNA modification GTPase [Bacillus sp. 2_A_57_CT2]
Length = 461
Score = 338 bits (867), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 193/478 (40%), Positives = 280/478 (58%), Gaps = 24/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG A +I R+F+ V K+ K S H +
Sbjct: 3 FDTIAAISTPMG--EGAIAIVRLSGDQAFEIADRLFRGVGGKRLKDVAS-------HTIH 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G + +EV+ M P+++T+EDV+E+ CHG V + RVL+ L GA LA+
Sbjct: 54 YGHIMDPKTGQIAEEVMVSAMKGPKTFTKEDVIEINCHGGLVSVNRVLQLLLNNGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL ++G S L+ +R + +E+L
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNMALGQMEGRLSKLIQKLRQEILEIL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + ++M+K + Q++E L+T+ K+L+ GL IVGRPN
Sbjct: 174 AHVEVNIDYPEYDDVEEMTHQMLMEKASYVKQEIEKLLQTSQQGKILREGLSTVIVGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 234 VGKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
E+S V AD+I++ ++ D TSED + ++ +I+++NK D
Sbjct: 294 EKSRQVLKEADLILLVLNYSDELTSEDENIFKAVE--------GMDVIVIVNKTDLDQKI 345
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ N+V H V T + QG+ DLE AI + I AG + N R L
Sbjct: 346 --DMNRVRELSKHHKLVTTSLLEDQGVDDLEEAIASLFFAGSIEAGDMTYVSNTRHIALL 403
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + A+ +E P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 404 NQAQNAIDEAMQGVEMGTPIDIVQIDLTRTWELLGEIIGDSVHESLIDQLFSQFCLGK 461
>gi|87123548|ref|ZP_01079399.1| tRNA modification GTPase TrmE [Synechococcus sp. RS9917]
gi|86169268|gb|EAQ70524.1| tRNA modification GTPase TrmE [Synechococcus sp. RS9917]
Length = 460
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 197/460 (42%), Positives = 281/460 (61%), Gaps = 24/460 (5%)
Query: 107 GAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGN-VVDE 165
G + ++RLSGP A +P + + G W SH V YG VL G +DE
Sbjct: 23 GGIAVIRLSGPAA--------QPAVRAITRIPGYQPWE--SHRVLYGHVLAADGQERIDE 72
Query: 166 VLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEA-GATLAQPGEFTLRAFLNGRL 224
VL +PMLAPRS+T EDVVE+ CHG + ++RVL LE G A PGEF+ RA LNGRL
Sbjct: 73 VLVLPMLAPRSFTAEDVVEIHCHGGVMAVQRVLARVLEQPGVRRALPGEFSQRAVLNGRL 132
Query: 225 DLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMP 284
DL++AE + L++A+S AA A+AG+ GG T++R + ++ L+E+EAR+DF++++P
Sbjct: 133 DLTRAEAISDLVAARSQRAAQLAMAGVDGGIQRRTTALRERLLDQLSELEARVDFEEDLP 192
Query: 285 PLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERA 344
PL+ ++ ++ A+ ++ + L+SGL++A+VGRPNVGKSSLLN S+ ERA
Sbjct: 193 PLDGAALLAELQAVRAELLQLVADGERSAALRSGLRVALVGRPNVGKSSLLNRLSRRERA 252
Query: 345 IVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMT 404
IVT++ GTTRD++E+ + + GVP+TLLDTAGIR T D VE++G+ RS AD++++
Sbjct: 253 IVTDLPGTTRDLLESEIVLEGVPITLLDTAGIRATTDAVEQLGIARSHDALASADLVLLL 312
Query: 405 VSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVF 464
+GWT++D L RI P +LV NK D +PS+ +G + V
Sbjct: 313 FDLSEGWTADDQALRQRIPEE-------VPHLLVGNKADLSPSSG---AGLGAAVAADVC 362
Query: 465 TCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEEL 524
A TG G +L A++ G + G A+NQRQ + + EAL R + E L
Sbjct: 363 LSASTGAGEAELIQALLARCG--ALTDGSLLLALNQRQADLAQQAAEALARSEQVAAEGL 420
Query: 525 PLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
P DFWTIDLR A +LG I+GE++SE VL IF +FCIGK
Sbjct: 421 PWDFWTIDLRQAIQSLGAITGEELSESVLDRIFSRFCIGK 460
>gi|33239666|ref|NP_874608.1| tRNA modification GTPase TrmE [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|46577393|sp|Q7VE01.1|MNME_PROMA RecName: Full=tRNA modification GTPase MnmE
gi|33237191|gb|AAP99260.1| Predicted GTPase [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 455
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 189/478 (39%), Positives = 292/478 (61%), Gaps = 32/478 (6%)
Query: 92 FST---IAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSH 148
FST IAAI +++ GA+ IV++SG A ++V V + K W +SH
Sbjct: 5 FSTEENIAAIASAVAPGQGAIAIVKVSGASAKEVVKNVVRTPSNK--------IW--SSH 54
Query: 149 VVEYGVVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
+ YG V+D+ +DEVL + M PRS+T EDVVE+ CHG + +++VL A L+ T
Sbjct: 55 KILYGHVIDKSTKKNIDEVLILIMDGPRSFTGEDVVEIHCHGGLIVVQQVLDAILKQPKT 114
Query: 208 L-AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKC 266
A PGEF+ RA LNGRLD++QAE + LI A+S AA A+AGI G ++ + +R K
Sbjct: 115 RRAFPGEFSQRAVLNGRLDITQAEAINDLIHARSQKAAQLAIAGIDGDITNKINYLREKL 174
Query: 267 IELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
++ L+EIEAR+DF++++P LN ++ + + +++ + A L+++GL++A+VG
Sbjct: 175 LDQLSEIEARIDFEEDLPKLNSKKLLTDLMLIRAELKQLINDAKQGSLIRNGLKVALVGL 234
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSS+LN SK ERAIVT++ GTTRD++E+ + + GVP+TL+DTAGIRET++ +EKI
Sbjct: 235 PNVGKSSILNLLSKHERAIVTDLPGTTRDLLESEIILEGVPITLIDTAGIRETNNEIEKI 294
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GV S+ AD++++ GW D LL +I TP +++ NK D
Sbjct: 295 GVSLSQKTLFTADIVVLIFDLSKGWNKNDQNLLEKI-------PKGTPTLIIGNKADLKS 347
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
++N H A+TG+G ++L ++K+ G +++ G A+NQRQ + +
Sbjct: 348 QSTN--------IQPHATMTAITGEGEKELIQELLKLAGANELE--GIEVALNQRQLDLV 397
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL +++ E L DFWTIDLR+A LG+++GE+++E +L IF +FCIGK
Sbjct: 398 KVAVNALDQIEKVAAESLAWDFWTIDLREAIYKLGELTGEEVTEALLDRIFSRFCIGK 455
>gi|124024442|ref|YP_001018749.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
9303]
gi|166234806|sp|A2CDC4.1|MNME_PROM3 RecName: Full=tRNA modification GTPase MnmE
gi|123964728|gb|ABM79484.1| putative thiophen / furan oxidation protein [Prochlorococcus
marinus str. MIT 9303]
Length = 465
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 202/465 (43%), Positives = 293/465 (63%), Gaps = 30/465 (6%)
Query: 107 GAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGN-VVDE 165
G + +VRLSGP A ++VGR + G W SH V YG V+D G +DE
Sbjct: 24 GGIAVVRLSGP-AAEVVGRSVVSI-------PGQQLW--VSHRVLYGHVMDESGKERIDE 73
Query: 166 VLAVPMLAPRSYTREDVVELQCHGSEVCLRRVL-RACLEAGATLAQPGEFTLRAFLNGRL 224
VL + M PRS+T EDVVE+ CHG + ++RVL R + A PGEF+ RA LNGRL
Sbjct: 74 VLVLLMKGPRSFTGEDVVEIHCHGGLMAVQRVLERVLAQPHVRRALPGEFSQRAVLNGRL 133
Query: 225 DLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMP 284
DL+QAE + +L++A+S AA A+ G+ GG +TS+R + ++ L+E+EAR+DF++++P
Sbjct: 134 DLTQAEAISELVAARSRRAAQLAMTGVDGGIQRRITSLRERLLDQLSELEARVDFEEDLP 193
Query: 285 PLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERA 344
PL+ ++ ++ + +++E +E A +L+ GLQ+A+VGRPNVGKSSLLN S+ ERA
Sbjct: 194 PLDAAELLLELQCVRRELEQLVEDAKRGDVLRQGLQVALVGRPNVGKSSLLNRLSRRERA 253
Query: 345 IVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMT 404
IVT++ GTTRDV+E+ + + GVP+TL+DTAGIR T D +E++G++RS ADV ++
Sbjct: 254 IVTDLPGTTRDVLESEIVLEGVPITLVDTAGIRATKDALEQLGIDRSHQALAAADVAVLV 313
Query: 405 VSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP-----SASNEWNKVGNSF 459
GWT++D+ LL +I + P +LV NK D P S SNE + G +
Sbjct: 314 FDLSLGWTADDAALLAQIPDD-------LPRLLVGNKADLQPASMTASLSNEVD--GKTV 364
Query: 460 NDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSS 519
+ V A+TGQG + L A++K G + A G A+NQRQ + AL R + +
Sbjct: 365 D--VMLSALTGQGEEALIEAVLKTCGASE--AQGLVVALNQRQQDLAATAAIALARTQEA 420
Query: 520 IEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++LP DFWTIDLR A +LG+I+GE+I+E VL IF +FCIGK
Sbjct: 421 AAQKLPWDFWTIDLRQAISSLGEITGEEITEAVLDRIFSRFCIGK 465
>gi|299820854|ref|ZP_07052743.1| tRNA modification GTPase TrmE [Listeria grayi DSM 20601]
gi|299817875|gb|EFI85110.1| tRNA modification GTPase TrmE [Listeria grayi DSM 20601]
Length = 457
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 202/479 (42%), Positives = 286/479 (59%), Gaps = 30/479 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ I+RLSGP+A+ I R+F K+ +K S H
Sbjct: 3 FDTIAAIST----PPGEGAIAIIRLSGPLAIQIADRIFYAKKRLEKVDS---------HT 49
Query: 150 VEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
+ YG + +G ++EV+ M APR++TREDVVE+ HG V + RVL+ LE GA LA
Sbjct: 50 IHYGHI-KENGETIEEVMVSVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLEKGARLA 108
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V LI AK+ A AL + G S L+ S+R + ++
Sbjct: 109 EPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMGVALRQLDGNLSKLIRSLRQEILDA 168
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ + ++++K + VE L TA K+L+ GL AI+GRP
Sbjct: 169 LAQVEVNIDYPEYDDVEEMTQRMLLEKTQLVKNSVEQLLLTAKQGKILREGLATAIIGRP 228
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN + E+AIVT+IAGTTRD+IE V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 229 NVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIG 288
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD I++ ++ + T ED L ++ K T ++V+NK D PS
Sbjct: 289 VERSRKALADADFILLVLNQNEALTIEDEALF---EAAKGHT-----FVVVLNKTDL-PS 339
Query: 448 ASN--EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+ + K+ N N V T + +G++DLE AI + +I AG + N R
Sbjct: 340 KIDRKQLEKLANG-NAIVETSLLKDEGMRDLEEAINSLFFEGEIDAGDATYISNVRHIAL 398
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + EAL + + +P+D ID+ A LG+I+G+ + +E+L +F +FC+GK
Sbjct: 399 LHQAIEALDAVVEGVSVGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457
>gi|318040678|ref|ZP_07972634.1| tRNA modification GTPase TrmE [Synechococcus sp. CB0101]
Length = 449
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 197/459 (42%), Positives = 280/459 (61%), Gaps = 28/459 (6%)
Query: 107 GAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLD-RHGNVVDE 165
G+V IVR+SGP A I R+F + G W SH V YG V D +G VDE
Sbjct: 18 GSVAIVRVSGPEAEAIGQRLFS--------APGDQPWE--SHRVLYGYVCDPANGERVDE 67
Query: 166 VLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLD 225
L + M APRS+TRE VVE CHG + ++RVL L +GA A PGEF+ RAFLNGRLD
Sbjct: 68 ALLLLMRAPRSFTRETVVEFHCHGGLISVQRVLELVLVSGARRALPGEFSQRAFLNGRLD 127
Query: 226 LSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPP 285
L++AE + +L++A+S AA A+AG+ GG ++++R + ++ L E+EAR+DF+D++PP
Sbjct: 128 LTRAEAISELVTARSRRAAQLAMAGLDGGLQVRISALRERLLDQLAELEARVDFEDDLPP 187
Query: 286 LNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAI 345
L+ + V ++ A+ D+E + +LL+ GL++AIVGRPNVGKSSLLN S SERAI
Sbjct: 188 LDGDAVALELQAVRTDLEQLVADGERGQLLREGLRVAIVGRPNVGKSSLLNRLSCSERAI 247
Query: 346 VTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTV 405
VT++ GTTRD++E+ + + GVP+TLLDTAGIR T D VE+IG+ERS + AD +++
Sbjct: 248 VTDLPGTTRDLVESELVLQGVPLTLLDTAGIRATTDRVEQIGIERSRSALQVADAVLLLF 307
Query: 406 SAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFT 465
GW +D+ L + P+++V NK D A + V
Sbjct: 308 DLSAGWCDDDAAL-------GELVPEGVPVLVVGNKADQLTGAP--------AVQADVCI 352
Query: 466 CAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELP 525
A+TG G +L ++ G H P G + A+N+RQ + +L + ++LP
Sbjct: 353 SALTGAGETELVHQLLARCG-HSDPQ-GVQLALNRRQQDLAAAAAASLSASLEAASQQLP 410
Query: 526 LDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
DFWTIDLR A ALG+I+GE++SE VL +F +FCIGK
Sbjct: 411 WDFWTIDLRAAVRALGEITGEEVSEAVLDRVFSRFCIGK 449
>gi|352095560|ref|ZP_08956574.1| tRNA modification GTPase mnmE [Synechococcus sp. WH 8016]
gi|351678702|gb|EHA61847.1| tRNA modification GTPase mnmE [Synechococcus sp. WH 8016]
Length = 463
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 196/474 (41%), Positives = 286/474 (60%), Gaps = 24/474 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
+IAAI T++ G + ++RLSGP AV V + G W SH + YG
Sbjct: 11 SIAAIATAVAPGQGGIAVIRLSGPSAVRAVAAI--------TVIPGQQLWE--SHRIVYG 60
Query: 154 VVLDRHG-NVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEA-GATLAQP 211
V+ G +DEVL + MLAPRS+T EDVVE+ CHG + +++VL LE G A P
Sbjct: 61 HVVAAGGVERLDEVLVLVMLAPRSFTGEDVVEIHCHGGVIAVQQVLARVLEQPGVRRALP 120
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEF+ RA LNGRLDL++AE + L+ A+S AA A+AG+ GG + +R + ++ L+
Sbjct: 121 GEFSQRAVLNGRLDLTRAEAIGDLVGARSQRAAQLAMAGLDGGIQKKMVVLRERLLDQLS 180
Query: 272 EIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
E+EAR+DF++++PPL+ ++ ++ A+ ++ + +++ GL++A+VGRPNVGK
Sbjct: 181 ELEARVDFEEDLPPLDGAALLQELQAVRMELNTLVADGERGSVVRHGLRVALVGRPNVGK 240
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLN S+ ERAIVT++ GTTRD++E+ + + GVP+TLLDTAGIR T D VE++G+ RS
Sbjct: 241 SSLLNLLSRRERAIVTDLPGTTRDLLESEIVLDGVPITLLDTAGIRATCDAVEQLGIARS 300
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
AD++++ GW+ ED L ++I P + V NK D + A +
Sbjct: 301 RDALASADLVLLLFDLAQGWSQEDQALFSQIPEG-------VPCLRVGNKADLSLKADSV 353
Query: 452 WNKVGNSFNDHVFTCAVTGQGIQDLETAIM-KIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
V + D V AVTG+G QDL A++ + GL + P A+NQRQ +
Sbjct: 354 AGPVSSPVAD-VRLSAVTGEGEQDLVRAVLERCGGLSEQPL---LLALNQRQSDLASTAA 409
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
EAL R + + LP DFWTIDLR A +LG+I+GE ++E VL IF +FCIGK
Sbjct: 410 EALARSEQVAADGLPWDFWTIDLRQAIRSLGEITGEQLTESVLDRIFSRFCIGK 463
>gi|402778273|ref|YP_006632217.1| tRNA modification GTPase [Bacillus subtilis QB928]
gi|402483452|gb|AFQ59961.1| TRNA modification GTPase and tRNA-U34 5-formylationenzyme [Bacillus
subtilis QB928]
Length = 462
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 285/476 (59%), Gaps = 20/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T +G GA+ IVRLSGP A+ I +++K K K S SH +
Sbjct: 4 MDTIAAISTPMG--EGAIAIVRLSGPEAIQIADKIYKGPKGKTLSSV-------ESHTIH 54
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++DR + VV+EV+ + APR++TREDV+E+ CHG V + +VL+ L GA LA+
Sbjct: 55 YGHIVDRPSDRVVEEVMVSVLKAPRTFTREDVIEINCHGGIVTVNQVLQLALREGARLAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S+LV +R++ +E L
Sbjct: 115 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRSEILETL 174
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + ++++K A+ +++E L T+ K+L+ GL I+GRPN
Sbjct: 175 AHVEVNIDYPEYDDVEEMTHQILVEKATAVKKEIETLLRTSEQGKILREGLSTVIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 235 VGKSSLLNSLVHEAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ + + ED +L ++ +I+++NK D P
Sbjct: 295 ERSRQVLKEADLILLVLNYSEELSEEDVKLFEAVE--------GMDVIVILNKTDLEPKI 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + + V T + +GI DLE AI + I +G + N R L +
Sbjct: 347 DTERVRELANGRPVVTTSLLKEEGINDLEEAIQSLFYTGAIESGDLTYVSNTRHITILQQ 406
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K A+ S IE+++P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 407 AKRAIEDALSGIEQDVPIDMVQIDLTRCWELLGEIIGDSVHESLIDQLFSQFCLGK 462
>gi|16081154|ref|NP_391982.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis
str. 168]
gi|221312085|ref|ZP_03593932.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis
str. 168]
gi|221316410|ref|ZP_03598215.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis
str. NCIB 3610]
gi|221321323|ref|ZP_03602617.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis
str. JH642]
gi|221325606|ref|ZP_03606900.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis
str. SMY]
gi|452913762|ref|ZP_21962390.1| tRNA modification GTPase TrmE [Bacillus subtilis MB73/2]
gi|135725|sp|P25811.1|MNME_BACSU RecName: Full=tRNA modification GTPase MnmE
gi|40025|emb|CAA44403.1| unnamed protein product [Bacillus subtilis]
gi|467386|dbj|BAA05232.1| thiophen and furan oxidation [Bacillus subtilis]
gi|2636649|emb|CAB16139.1| tRNA modification GTPase and tRNA-U34 5-formylation enzyme
[Bacillus subtilis subsp. subtilis str. 168]
gi|407962957|dbj|BAM56197.1| tRNA modification GTPase TrmE [Bacillus subtilis BEST7613]
gi|407966969|dbj|BAM60208.1| tRNA modification GTPase TrmE [Bacillus subtilis BEST7003]
gi|452118790|gb|EME09184.1| tRNA modification GTPase TrmE [Bacillus subtilis MB73/2]
Length = 459
Score = 335 bits (859), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 285/476 (59%), Gaps = 20/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T +G GA+ IVRLSGP A+ I +++K K K S SH +
Sbjct: 1 MDTIAAISTPMG--EGAIAIVRLSGPEAIQIADKIYKGPKGKTLSSV-------ESHTIH 51
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++DR + VV+EV+ + APR++TREDV+E+ CHG V + +VL+ L GA LA+
Sbjct: 52 YGHIVDRPSDRVVEEVMVSVLKAPRTFTREDVIEINCHGGIVTVNQVLQLALREGARLAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S+LV +R++ +E L
Sbjct: 112 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRSEILETL 171
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + ++++K A+ +++E L T+ K+L+ GL I+GRPN
Sbjct: 172 AHVEVNIDYPEYDDVEEMTHQILVEKATAVKKEIETLLRTSEQGKILREGLSTVIIGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 232 VGKSSLLNSLVHEAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ + + ED +L ++ +I+++NK D P
Sbjct: 292 ERSRQVLKEADLILLVLNYSEELSEEDVKLFEAVE--------GMDVIVILNKTDLEPKI 343
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + + V T + +GI DLE AI + I +G + N R L +
Sbjct: 344 DTERVRELANGRPVVTTSLLKEEGINDLEEAIQSLFYTGAIESGDLTYVSNTRHITILQQ 403
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K A+ S IE+++P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 404 AKRAIEDALSGIEQDVPIDMVQIDLTRCWELLGEIIGDSVHESLIDQLFSQFCLGK 459
>gi|336237218|ref|YP_004589834.1| tRNA modification GTPase mnmE [Geobacillus thermoglucosidasius
C56-YS93]
gi|335364073|gb|AEH49753.1| tRNA modification GTPase mnmE [Geobacillus thermoglucosidasius
C56-YS93]
Length = 461
Score = 335 bits (858), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 197/476 (41%), Positives = 279/476 (58%), Gaps = 20/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG A+ I RVFK K+ K SH +
Sbjct: 3 FDTIAAISTPMG--EGAIAIVRLSGDEAIAIADRVFKSPSGKRLKDV-------PSHTIH 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+E + M AP+++TREDVVE+ CHG V + RVL+ L GA LA+
Sbjct: 54 YGHIVDPNSGQTVEEAMVSVMRAPKTFTREDVVEINCHGGLVSVNRVLQLVLTNGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL ++G S + +R +E L
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVIDLIRAKTDRAMNVALQQMEGHLSKRIRELRQAILETL 173
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + +L+M+K + + +E L+TA K+L+ GL I+GRPN
Sbjct: 174 AHVEVNIDYPEYDDIEEMTPHLLMEKAQYVREQIEKLLQTAQQGKILREGLATVIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLNA +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 234 VGKSSLLNALVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDIVERIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS + AD+I++ ++ + T+ED +L + ++ I+++NK D
Sbjct: 294 ERSRQMLKEADLILLVLNYHEPLTAEDEKLFDMVK--------GMDFIVIVNKTDLPQHI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ K + T + +GI+DLETAI + + AG + N R L +
Sbjct: 346 DMDRVKQLAGGRPIITTSLLHEKGIEDLETAISNMFFSGAVEAGDLTYVSNSRHIALLQQ 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+A+ S IE +P+D IDL A LG+I G+ + E ++ +F +FC+GK
Sbjct: 406 AKKAVEDAISGIESGMPVDLVQIDLTRAWELLGEIIGDTVHESLIDQLFSQFCLGK 461
>gi|423721711|ref|ZP_17695893.1| tRNA modification GTPase trmE [Geobacillus thermoglucosidans
TNO-09.020]
gi|383365514|gb|EID42810.1| tRNA modification GTPase trmE [Geobacillus thermoglucosidans
TNO-09.020]
Length = 461
Score = 334 bits (857), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 197/476 (41%), Positives = 279/476 (58%), Gaps = 20/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG A+ I RVFK K+ K SH +
Sbjct: 3 FDTIAAISTPMG--EGAIAIVRLSGDEAIAIADRVFKSPSGKRLKDV-------PSHTIH 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+E + M AP+++TREDVVE+ CHG V + RVL+ L GA LA+
Sbjct: 54 YGHIVDPNSGQTVEEAMVSVMRAPKTFTREDVVEINCHGGLVSVNRVLQLVLTNGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL ++G S + +R +E L
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVIDLIRAKTDRAMNVALQQMEGRLSKRIRELRQAILETL 173
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + +L+M+K + + +E L+TA K+L+ GL I+GRPN
Sbjct: 174 AHVEVNIDYPEYDDIEEMTPHLLMEKAQYVREQIEKLLQTAQQGKILREGLATVIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLNA +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 234 VGKSSLLNALVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDIVERIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS + AD+I++ ++ + T+ED +L + ++ I+++NK D
Sbjct: 294 ERSRQMLKEADLILLVLNYHEPLTAEDEKLFDMVK--------GMDFIVIVNKTDLPQHI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ K + T + +GI+DLETAI + + AG + N R L +
Sbjct: 346 DMDRVKQLAGGRPIITTSLLHEKGIEDLETAISNMFFSGAVEAGDLTYVSNSRHIALLQQ 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+A+ S IE +P+D IDL A LG+I G+ + E ++ +F +FC+GK
Sbjct: 406 AKKAVEDAISGIESGMPVDLVQIDLTRAWELLGEIIGDTVHESLIDQLFSQFCLGK 461
>gi|260584383|ref|ZP_05852130.1| tRNA modification GTPase TrmE [Granulicatella elegans ATCC 700633]
gi|260157901|gb|EEW92970.1| tRNA modification GTPase TrmE [Granulicatella elegans ATCC 700633]
Length = 476
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 191/476 (40%), Positives = 280/476 (58%), Gaps = 21/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T+ G GA+GIVR+SG +A+ I +++ K+ ++ +H +
Sbjct: 19 FDTIAAISTAPG--EGAIGIVRISGDLAISIASSIYQCGTKQLEEQK--------THTIH 68
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V DEV+ + AP+++TRED+VE+ CHG V + RVL+ L GA LA+
Sbjct: 69 YGHIVDPKSGEVYDEVMVSVLRAPKTFTREDIVEINCHGGIVAINRVLQLVLRMGARLAE 128
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ + A+ + G S L+ ++R + + L
Sbjct: 129 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDKSMQLAMRQLDGQLSHLIQNLRQEILNTL 188
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L L+ +K + Q + L TA+ K+L+ GL+ AIVGRPN
Sbjct: 189 AQVEVNIDYPEYDDVEEMTLQLLREKTQQVLQGIRALLNTASQGKILRDGLKTAIVGRPN 248
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+IAGTTRD IE V V GVP+ L+DTAGIRETDDIVEKIGV
Sbjct: 249 VGKSSLLNVLLREEKAIVTDIAGTTRDTIEEYVNVRGVPLQLIDTAGIRETDDIVEKIGV 308
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD +++ ++ + ED LL + K+ I++ NK D
Sbjct: 309 ERSRKALKEADFVLLLLNQSETLQEEDIRLLETTKGMKR--------IILFNKTDLPSKL 360
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
S E + V T + +GI LE I Q+ + N R L +
Sbjct: 361 SKEDIAPYAQVEEIVTTSMLNKEGIDQLEEKIAGYFFQGQMNERDATYLSNTRHIALLEK 420
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++ALV +++ IE +P+D ID A LG+I+G+ + +E+L+ +F +FC+GK
Sbjct: 421 AEQALVEVQNGIEMGMPVDLIQIDFTRAWDLLGEITGDSVQDELLTQLFSQFCLGK 476
>gi|430756777|ref|YP_007207415.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|430021297|gb|AGA21903.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis
str. BSP1]
Length = 462
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 284/476 (59%), Gaps = 20/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T +G GA+ IVRLSGP A+ I R++K K K S SH +
Sbjct: 4 MDTIAAISTPMG--EGAIAIVRLSGPEAIQIADRIYKGPKGKTLSSV-------ESHTIH 54
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++DR + VV+EV+ + APR++TREDV+E+ CHG V + +VL+ L GA LA+
Sbjct: 55 YGHIVDRPSDRVVEEVMVSVLKAPRTFTREDVIEINCHGGIVTVNQVLQLALREGARLAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S+LV +R++ +E L
Sbjct: 115 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRSEILETL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + ++++K A+ +++E L T+ K+L+ GL I+GRPN
Sbjct: 175 AHVEVNIDYPEYDDVEEMTHQILVEKATAVKKEIEALLRTSEQGKILREGLSTVIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 235 VGKSSLLNSLVHEAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ + + ED +L ++ +I+++NK D
Sbjct: 295 ERSRQVLKEADLILLVLNYSEELSEEDVKLFEAVE--------GMDVIVILNKTDLEAKI 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + + V T + +GI DLE AI + I +G + N R L +
Sbjct: 347 DTERVRELANGRPVVTTSLLKEEGINDLEEAIQSLFYTGAIESGDLTYVSNTRHISILQQ 406
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K A+ S IE+++P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 407 AKRAIEDALSGIEQDVPIDMVQIDLTRCWELLGEIIGDSVHESLIDQLFSQFCLGK 462
>gi|296330032|ref|ZP_06872516.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305676756|ref|YP_003868428.1| tRNA modification GTPase [Bacillus subtilis subsp. spizizenii str.
W23]
gi|443631596|ref|ZP_21115777.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
gi|296153071|gb|EFG93936.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305415000|gb|ADM40119.1| tRNA modification GTPase [Bacillus subtilis subsp. spizizenii str.
W23]
gi|443349401|gb|ELS63457.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
Length = 459
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 285/476 (59%), Gaps = 20/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T +G GA+ IVRLSGP A+ I +++K K K S SH +
Sbjct: 1 MDTIAAISTPMG--EGAIAIVRLSGPEAIQIADKIYKGPKGKTLSSV-------ESHTIH 51
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++DR + VV+EV+ + APR++TREDV+E+ CHG V + +VL+ L GA LA+
Sbjct: 52 YGHIVDRPSDRVVEEVMVSVLKAPRTFTREDVIEINCHGGIVTVNQVLQLALREGARLAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S+LV +R++ +E L
Sbjct: 112 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRSEILETL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + L+++K A+ +++E L T+ K+L+ GL I+GRPN
Sbjct: 172 AHVEVNIDYPEYDDVEEMTHQLLVEKATAVKKEIEALLRTSEQGKILREGLSTVIIGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 232 VGKSSLLNSLVHEAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ + + ED +L ++ +I+++NK D
Sbjct: 292 ERSRQVLKEADLILLVLNYSEELSEEDVKLFEAVE--------GMDVIVIMNKTDLEAKI 343
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+E + + V T + +GI DLE AI + I +G + N R L +
Sbjct: 344 DSERVRELANGRPVVTTSLLKEEGINDLEEAIQSLFYTGAIESGDLTYVSNTRHISILQQ 403
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K A+ S IE+++P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 404 AKRAIEDALSGIEQDVPIDMVQIDLTRCWELLGEIIGDSVHESLIDQLFSQFCLGK 459
>gi|317968166|ref|ZP_07969556.1| tRNA modification GTPase TrmE [Synechococcus sp. CB0205]
Length = 449
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 199/459 (43%), Positives = 287/459 (62%), Gaps = 28/459 (6%)
Query: 107 GAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLD-RHGNVVDE 165
G+V IVR+SGP A I R+F+ + G W SH V YG V D G VDE
Sbjct: 18 GSVSIVRISGPEAEAIGERLFE--------APGQQVW--ESHRVLYGHVRDPGSGERVDE 67
Query: 166 VLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLD 225
L + M APRS+TRE VVEL CHG + ++RVL L AGA A PGEF+ RAFLNGRLD
Sbjct: 68 ALLLLMRAPRSFTRETVVELHCHGGVISVQRVLELVLAAGARRALPGEFSQRAFLNGRLD 127
Query: 226 LSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPP 285
L++AE + +L++A+S AA A+AG+ GG ++ +R + ++ L E+EAR+DF+D++PP
Sbjct: 128 LTRAEAISELVTARSRRAAQLAMAGLDGGLERQISGLRLRLLDQLAELEARVDFEDDLPP 187
Query: 286 LNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAI 345
L+ V ++ A+ ++ + ++L+ GL++AIVGRPNVGKSSLLN S+S+RAI
Sbjct: 188 LDGQAVASELQAVRSALQELVADGERGQVLREGLKVAIVGRPNVGKSSLLNLLSRSDRAI 247
Query: 346 VTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTV 405
VT++ GTTRD++E+ + + GVP+TLLDTAGIR+T+D VE+IG+ERS ADV+++
Sbjct: 248 VTDLPGTTRDLVESELVLKGVPLTLLDTAGIRDTEDRVEQIGIERSRGALQAADVVLLLF 307
Query: 406 SAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFT 465
GW +ED LL S P ++V NK D P+A + + V
Sbjct: 308 DRAQGWLAEDQALL-------ASLPQGIPHLVVANKAD-QPAAE-------PAAHADVCI 352
Query: 466 CAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELP 525
A+TG+G + L +++ G Q G + A+N+RQ + + +L R + E++LP
Sbjct: 353 SALTGEGHEALVDRLLQSCG--QGGEQGLQVALNRRQLDLAVSAAASLQRTLEAGEQQLP 410
Query: 526 LDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
DFWTIDLR A +LG+I+G +++E VL IF +FCIGK
Sbjct: 411 WDFWTIDLRAAVRSLGEITGAEVTEAVLDRIFSRFCIGK 449
>gi|312112752|ref|YP_003991068.1| tRNA modification GTPase TrmE [Geobacillus sp. Y4.1MC1]
gi|311217853|gb|ADP76457.1| tRNA modification GTPase TrmE [Geobacillus sp. Y4.1MC1]
Length = 461
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 197/476 (41%), Positives = 279/476 (58%), Gaps = 20/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG A+ I RVFK K+ K SH +
Sbjct: 3 FDTIAAISTPMG--EGAIAIVRLSGDEAIAIADRVFKSPSGKRLKDV-------PSHTIH 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+E + M AP+++TREDVVE+ CHG V + RVL+ L GA LA+
Sbjct: 54 YGHIVDPNSGQTVEEAMVSVMRAPKTFTREDVVEINCHGGLVSVNRVLQLVLTNGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL ++G S + +R +E L
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVIDLIRAKTDRAMNVALQQMEGRLSKRIRELRQAILETL 173
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + +L+M+K + + +E L+TA K+L+ GL I+GRPN
Sbjct: 174 AHVEVNIDYPEYDDIEEMTPHLLMEKAQYVREQIEKLLQTAQQGKILREGLATVIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLNA +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 234 VGKSSLLNALVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDIVERIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS + AD+I++ ++ + T+ED +L + ++ I+++NK D
Sbjct: 294 ERSWQMLKEADLILLVLNYHEPLTAEDEKLFDMVK--------GMDFIVIVNKTDLPQHI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ K + T + +GI+DLETAI + + AG + N R L +
Sbjct: 346 DMDRVKQLAGGRPIITTSLLHEKGIEDLETAISNMFFSGAVEAGDLTYVSNSRHIALLQQ 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+A+ S IE +P+D IDL A LG+I G+ + E ++ +F +FC+GK
Sbjct: 406 AKKAVEDAISGIESGMPVDLVQIDLTRAWELLGEIIGDTVHESLIDQLFSQFCLGK 461
>gi|254432026|ref|ZP_05045729.1| tRNA modification GTPase TrmE [Cyanobium sp. PCC 7001]
gi|197626479|gb|EDY39038.1| tRNA modification GTPase TrmE [Cyanobium sp. PCC 7001]
Length = 456
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 197/459 (42%), Positives = 279/459 (60%), Gaps = 28/459 (6%)
Query: 107 GAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLD-RHGNVVDE 165
G+V IVR+SGP A I R+F+ + G W SH V YG V+D VDE
Sbjct: 25 GSVAIVRISGPRAEAIGARLFR--------APGQQVW--DSHRVLYGHVVDPATEEPVDE 74
Query: 166 VLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLD 225
L + M APRS+TRE VVEL HG V ++RVL L AGA A PGEF+ RAFL+GRLD
Sbjct: 75 ALLLLMRAPRSFTRETVVELHGHGGLVAVQRVLELVLAAGARRALPGEFSQRAFLHGRLD 134
Query: 226 LSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPP 285
L++AE + +L++A+S AA A+AG+ GG + ++R + ++ L E+EAR+DF++++PP
Sbjct: 135 LTRAEAISELVTARSRRAAQLAMAGLDGGLQRRIGALRERLLDQLAELEARVDFEEDLPP 194
Query: 286 LNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAI 345
L+ V+ + A+ +++E + A LL+ GL++AIVGRPNVGKSSLLN S+ ERAI
Sbjct: 195 LDGEAVVAALTAVRRELEQLVAEARQGALLREGLRVAIVGRPNVGKSSLLNRLSRRERAI 254
Query: 346 VTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTV 405
VT++ GTTRD++E+ + + GVP+TLLDTAGIR TDD VE++G+ RS AD +++
Sbjct: 255 VTDLPGTTRDLLESELVLDGVPLTLLDTAGIRPTDDAVEQLGIARSREALAAADAVVLVF 314
Query: 406 SAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFT 465
GWT D+EL + P++LV NK D P + V S
Sbjct: 315 DLTAGWTPADAEL-------RALVPDGVPLLLVGNKADLDPGPAAAQADVAIS------- 360
Query: 466 CAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELP 525
A+TG G L +++ G ++ G + A+N RQ + R AL + ++LP
Sbjct: 361 -ALTGAGSDALVEQLLQRCGAAEVQ--GVQVALNDRQRDLAARAAVALTGSLEAAAQQLP 417
Query: 526 LDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
DFWTIDLR A LG+I+GE++SE VL +F +FCIGK
Sbjct: 418 WDFWTIDLRGAVRCLGEITGEEVSEAVLDRVFARFCIGK 456
>gi|350268394|ref|YP_004879701.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349601281|gb|AEP89069.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 459
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 192/476 (40%), Positives = 285/476 (59%), Gaps = 20/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T +G GA+ IVRLSGP A+ I +++K K K S SH +
Sbjct: 1 MDTIAAISTPMG--EGAIAIVRLSGPEAIQIADKIYKGPKGKTLSSV-------ESHTIH 51
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++DR + VV+EV+ + APR++TREDV+E+ CHG V + +VL+ L GA LA+
Sbjct: 52 YGHIVDRPSDRVVEEVMVSVLKAPRTFTREDVIEINCHGGIVTVNQVLQLALREGARLAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S+LV +R++ +E L
Sbjct: 112 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRSEILETL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + L+++K A+ +++E L T+ K+L+ GL I+GRPN
Sbjct: 172 AHVEVNIDYPEYDDVEEMTHQLLVEKATAVKKEIEALLRTSEQGKILREGLSTVIIGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 232 VGKSSLLNSLVHEAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ + + ED +L ++ +I+++NK D
Sbjct: 292 ERSRQVLKEADLILLVLNYSEELSEEDVKLFEAVE--------GMDVIVIMNKTDLEAKI 343
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+E + + V T + +G+ DLE AI + I +G + N R L +
Sbjct: 344 DSERVRELANGRPVVTTSLLKEEGVNDLEEAIQSLFYTGAIESGDLTYVSNTRHISILQQ 403
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K A+ S IE+++P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 404 AKRAIEDALSGIEQDVPIDMVQIDLTRCWELLGEIIGDSVHESLIDQLFSQFCLGK 459
>gi|138897067|ref|YP_001127520.1| tRNA modification GTPase TrmE [Geobacillus thermodenitrificans
NG80-2]
gi|196249888|ref|ZP_03148584.1| tRNA modification GTPase TrmE [Geobacillus sp. G11MC16]
gi|166200479|sp|A4ITX1.1|MNME_GEOTN RecName: Full=tRNA modification GTPase MnmE
gi|134268580|gb|ABO68775.1| Thiophen and furan oxidation [Geobacillus thermodenitrificans
NG80-2]
gi|196210764|gb|EDY05527.1| tRNA modification GTPase TrmE [Geobacillus sp. G11MC16]
Length = 462
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 202/479 (42%), Positives = 281/479 (58%), Gaps = 26/479 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG AV+I R+F+ K+ K SH +
Sbjct: 4 FDTIAAISTPMG--EGAIAIVRLSGDEAVEIADRLFRSPTGKQLKDV-------PSHTIH 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G +V+EV+ M AP+++TREDVVE+ CHG V + RVL+ L GA LA+
Sbjct: 55 YGHIVDPKSGRIVEEVMVSVMRAPKTFTREDVVEINCHGGFVSVNRVLQLVLANGARLAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL ++G S L+ +R +E L
Sbjct: 115 PGEFTKRAFLNGRIDLSQAEAVIDLIRAKTDRAMNVALQQMEGRLSKLIRELRQTILETL 174
Query: 271 TEIEARLDF---DD--EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVG 325
+E +D+ DD EM P L+ +K + +E L TA K+L+ GL I+G
Sbjct: 175 AHVEVNIDYPEYDDVEEMTP---RLLKEKAEYVRGQIEKLLSTATQGKILREGLATVIIG 231
Query: 326 RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEK 385
RPNVGKSSLLNA + RAIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+
Sbjct: 232 RPNVGKSSLLNALAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDIVER 291
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445
IGVERS + AD+I++ ++ + T ED L + +I+++NK D
Sbjct: 292 IGVERSRQMLKKADLILLVLNYHEPLTEEDERLF--------AMTEGMDVIVIVNKTDLP 343
Query: 446 PSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+ E K + V T + +GI +LE AI + ++ AG + N R
Sbjct: 344 QNIDIERVKELAAGRPIVATSLLCERGIDELEKAIADLFFGGELEAGDLTYVSNSRHIAL 403
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + K+A+ S I+ +P+D IDLR A LG+I G+ + E ++ +F +FC+GK
Sbjct: 404 LEQAKKAIEDALSGIDVGMPVDLVQIDLRRAWELLGEIVGDTVHESLIDQLFAQFCLGK 462
>gi|321313663|ref|YP_004205950.1| tRNA modification GTPase TrmE [Bacillus subtilis BSn5]
gi|384177759|ref|YP_005559144.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|428281784|ref|YP_005563519.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. natto
BEST195]
gi|449096564|ref|YP_007429055.1| tRNA modification GTPase [Bacillus subtilis XF-1]
gi|291486741|dbj|BAI87816.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. natto
BEST195]
gi|320019937|gb|ADV94923.1| tRNA modification GTPase TrmE [Bacillus subtilis BSn5]
gi|349596983|gb|AEP93170.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|449030479|gb|AGE65718.1| tRNA modification GTPase [Bacillus subtilis XF-1]
Length = 459
Score = 331 bits (849), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 192/476 (40%), Positives = 284/476 (59%), Gaps = 20/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T +G GA+ IVRLSGP A+ I +++K K K S SH +
Sbjct: 1 MDTIAAISTPMG--EGAIAIVRLSGPEAIQIADKIYKGPKGKTLSSV-------ESHTIH 51
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++DR + VV+EV+ + APR++TREDV+E+ CHG V + +VL+ L GA LA+
Sbjct: 52 YGHIVDRPSDRVVEEVMVSVLKAPRTFTREDVIEINCHGGIVTVNQVLQLALREGARLAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S+LV +R++ +E L
Sbjct: 112 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRSEILETL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + ++++K A+ +++E L T+ K+L+ GL I+GRPN
Sbjct: 172 AHVEVNIDYPEYDDVEEMTHQILVEKATAVKKEIEALLRTSEQGKILREGLSTVIIGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 232 VGKSSLLNSLVHEAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ + + ED +L ++ +I+++NK D
Sbjct: 292 ERSRQVLKEADLILLVLNYSEELSEEDVKLFEAVE--------GMDVIVILNKTDLEAKI 343
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + + V T + +GI DLE AI + I +G + N R L +
Sbjct: 344 DTERVRELANGRPVVTTSLLKEEGINDLEEAIQSLFYTGAIESGDLTYVSNTRHISILQQ 403
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K A+ S IE+++P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 404 AKRAIEDALSGIEQDVPIDMVQIDLTRCWELLGEIIGDSVHESLIDQLFSQFCLGK 459
>gi|418030653|ref|ZP_12669138.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|351471712|gb|EHA31825.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis
str. SC-8]
Length = 462
Score = 331 bits (849), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 192/476 (40%), Positives = 284/476 (59%), Gaps = 20/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T +G GA+ IVRLSGP A+ I +++K K K S SH +
Sbjct: 4 MDTIAAISTPMG--EGAIAIVRLSGPEAIQIADKIYKGPKGKTLSSV-------ESHTIH 54
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++DR + VV+EV+ + APR++TREDV+E+ CHG V + +VL+ L GA LA+
Sbjct: 55 YGHIVDRPSDRVVEEVMVSVLKAPRTFTREDVIEINCHGGIVTVNQVLQLALREGARLAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S+LV +R++ +E L
Sbjct: 115 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRSEILETL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + ++++K A+ +++E L T+ K+L+ GL I+GRPN
Sbjct: 175 AHVEVNIDYPEYDDVEEMTHQILVEKATAVKKEIEALLRTSEQGKILREGLSTVIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 235 VGKSSLLNSLVHEAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ + + ED +L ++ +I+++NK D
Sbjct: 295 ERSRQVLKEADLILLVLNYSEELSEEDVKLFEAVE--------GMDVIVILNKTDLEAKI 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + + V T + +GI DLE AI + I +G + N R L +
Sbjct: 347 DTERVRELANGRPVVTTSLLKEEGINDLEEAIQSLFYTGAIESGDLTYVSNTRHISILQQ 406
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K A+ S IE+++P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 407 AKRAIEDALSGIEQDVPIDMVQIDLTRCWELLGEIIGDSVHESLIDQLFSQFCLGK 462
>gi|116074031|ref|ZP_01471293.1| tRNA modification GTPase [Synechococcus sp. RS9916]
gi|116069336|gb|EAU75088.1| tRNA modification GTPase [Synechococcus sp. RS9916]
Length = 463
Score = 331 bits (848), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 196/476 (41%), Positives = 282/476 (59%), Gaps = 27/476 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TI A+ T++ G + ++RLSGP A +V + G W SH V
Sbjct: 12 LDTIVAVATAVAPGQGGIAVIRLSGPQAQQVV--------QTIAHFPGQQEW--ASHRVL 61
Query: 152 YGVVLDRHG-NVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEA-GATLA 209
YG VL G +DEVL + M APRS+T EDVVE+ CHG + ++RVL LE G A
Sbjct: 62 YGHVLAADGVERLDEVLVLVMQAPRSFTAEDVVEIHCHGGVIAVQRVLARVLEQPGVRRA 121
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
PGEF+ RA LNGRLDL++AE + L++A+S AA A+AG+ GG + ++R + ++
Sbjct: 122 LPGEFSQRAVLNGRLDLTRAEAITDLVAARSQRAAQLAMAGLDGGIQRRIGALRERLLDQ 181
Query: 270 LTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
L+E+EAR+DF++++PPL+ ++ ++ A+ + + L++GL++A+VGRPNV
Sbjct: 182 LSELEARVDFEEDLPPLDGPALLRELLAVRDALLELVADGERGDALRTGLRVALVGRPNV 241
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN S+ ERAIVT++ GTTRD++E+ + + GVP+TLLDTAGIR T D VE++G+
Sbjct: 242 GKSSLLNRLSRRERAIVTDLPGTTRDLLESEIVLEGVPITLLDTAGIRVTTDAVEQLGIA 301
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS AD++++ +GWT+ED LL RI + +LV NK D A
Sbjct: 302 RSHDALASADLVLLLFDLSEGWTAEDQALLARIPEGVEH-------LLVGNKADLAAPVQ 354
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVG-LHQIPAGGRRWAVNQRQCEQLMR 508
E G V A TG G +L A+++ G L + P A+NQRQ +
Sbjct: 355 AE----GRPLAVDVQLSAQTGDGEAELVQAMLRRCGALSEQPL---LLALNQRQVDLAAA 407
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL R + + LP DFWTIDLR A +LG+I+GE+++E VL IF +FCIGK
Sbjct: 408 AAAALQRSEEVAAQGLPWDFWTIDLRQAIQSLGEITGEELTESVLDRIFSRFCIGK 463
>gi|311070643|ref|YP_003975566.1| tRNA modification GTPase TrmE [Bacillus atrophaeus 1942]
gi|310871160|gb|ADP34635.1| tRNA modification GTPase TrmE [Bacillus atrophaeus 1942]
Length = 459
Score = 331 bits (848), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 283/476 (59%), Gaps = 20/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T +G GA+ IVRLSGP A+ I R++K K K S+ SH +
Sbjct: 1 MDTIAAISTPMG--EGAIAIVRLSGPEAIQIADRMYKGPKGKTISSA-------ESHTIH 51
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++DR VV+EV+ + APR++TREDV+E+ CHG V + +VL+ L GA LA+
Sbjct: 52 YGHIVDRSTQRVVEEVMVSVLRAPRTFTREDVIEINCHGGIVTVNQVLQLALREGARLAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S+LV +R + +E L
Sbjct: 112 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRNELLETL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + L+++K ++ ++++ L T+ K+L+ GL I+GRPN
Sbjct: 172 AHVEVNIDYPEYDDVEEMTHQLLIEKASSVKKEIDALLTTSEQGKILREGLSTVIIGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVEKIGV
Sbjct: 232 VGKSSLLNSLVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVEKIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ + + ED +L ++ +I+++NK D P
Sbjct: 292 ERSRQVLKEADLILLVLNYSEELSEEDVKLFEAVK--------GMDVIVILNKTDLEPKI 343
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ K + V T + +GI DLE AI + I +G + N R L
Sbjct: 344 DADRVKELANGRPVVTTSLLKEEGITDLEEAIQSLFFTGTIESGDLTYVSNTRHISILHE 403
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K A+ + IE+++P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 404 AKRAIEDALNGIEQDVPIDMVQIDLTRCWELLGEIIGDAVHESLIDQLFSQFCLGK 459
>gi|419820971|ref|ZP_14344575.1| tRNA modification GTPase TrmE [Bacillus atrophaeus C89]
gi|388474882|gb|EIM11601.1| tRNA modification GTPase TrmE [Bacillus atrophaeus C89]
Length = 462
Score = 330 bits (847), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 193/477 (40%), Positives = 284/477 (59%), Gaps = 20/477 (4%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
+ TIAAI T +G GA+ IVRLSGP A+ I R++K K K S+ SH +
Sbjct: 3 SMDTIAAISTPMG--EGAIAIVRLSGPEAIQIADRMYKGPKGKTISSA-------ESHTI 53
Query: 151 EYGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG ++DR VV+EV+ + APR++TREDV+E+ CHG V + +VL+ L GA LA
Sbjct: 54 HYGHIVDRSTQRVVEEVMVSVLRAPRTFTREDVIEINCHGGIVTVNQVLQLALREGARLA 113
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S+LV +R + +E
Sbjct: 114 EPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRNELLET 173
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L +E +D+ D++ + L+++K ++ ++++ L T+ K+L+ GL I+GRP
Sbjct: 174 LAHVEVNIDYPEYDDVEEMTHQLLIEKASSVKKEIDALLTTSEQGKILREGLSTVIIGRP 233
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 234 NVGKSSLLNSLVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVEKIG 293
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS V AD+I++ ++ + + ED +L ++ +I+++NK D P
Sbjct: 294 VERSRQVLKEADLILLVLNYSEELSEEDVKLFEAVK--------GMDVIVILNKTDLEPK 345
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ K + V T + +GI DLE AI + I +G + N R L
Sbjct: 346 IDADRVKELANGRPVVTTSLLKEEGITDLEEAIQSLFFTGTIESGDLTYVSNTRHISILH 405
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K A+ + IE+++P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 406 EAKRAIEDALNGIEQDVPIDMVQIDLTRCWELLGEIIGDAVHESLIDQLFSQFCLGK 462
>gi|386760816|ref|YP_006234033.1| tRNA modification GTPase TrmE [Bacillus sp. JS]
gi|384934099|gb|AFI30777.1| tRNA modification GTPase TrmE [Bacillus sp. JS]
Length = 459
Score = 330 bits (847), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 194/476 (40%), Positives = 284/476 (59%), Gaps = 20/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T +G GA+ IVRLSGP A+ I +++K K K+ GS SH +
Sbjct: 1 MDTIAAISTPMG--EGAIAIVRLSGPEAIQIADKIYKG---PKGKTLGS----VESHTIH 51
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++DR + VV+EV+ + APR++TREDV+E+ CHG V + +VL+ L GA LA+
Sbjct: 52 YGHIVDRPSDRVVEEVMVSVLKAPRTFTREDVIEINCHGGIVTVNQVLQLALREGARLAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S+LV +R + +E L
Sbjct: 112 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRREILETL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + L+++K A+ +++E L T+ K+L+ GL I+GRPN
Sbjct: 172 AHVEVNIDYPEYDDVEEMTHQLLVEKATAVKKEIEALLRTSEQGKILREGLSTVIIGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 232 VGKSSLLNSLVHEAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ + + ED +L ++ +I+++NK D
Sbjct: 292 ERSRQVLKEADLILLVLNNSEELSEEDVKLFEAVE--------GMDVIVILNKTDLEAKI 343
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + V T + +GI DLE AI + I +G + N R L +
Sbjct: 344 DTERVRELAHGRPVVTTSLLKEEGINDLEEAIQSLFYTGAIESGDLTYVSNTRHISILQQ 403
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K A+ S IE+++P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 404 AKRAIEDALSGIEQDVPIDMVQIDLTRCWELLGEIIGDSVHESLIDQLFSQFCLGK 459
>gi|157694475|ref|YP_001488937.1| tRNA modification GTPase TrmE [Bacillus pumilus SAFR-032]
gi|205829058|sp|A8FJG0.1|MNME_BACP2 RecName: Full=tRNA modification GTPase MnmE
gi|157683233|gb|ABV64377.1| tRNA modification GTP-binding protein TrmE [Bacillus pumilus
SAFR-032]
Length = 459
Score = 330 bits (847), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 194/478 (40%), Positives = 286/478 (59%), Gaps = 24/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T +G GA+ I+RLSGP AV I R++K K+KK S S H +
Sbjct: 1 MDTIAAISTPMG--EGAIAIIRLSGPEAVQIADRMYKGPKEKKLVSVDS-------HTIH 51
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D R V++EV+ + AP+++TREDV+E+ CHG V + +VL+ L GA LA+
Sbjct: 52 YGHIVDARTDQVIEEVMVSVLRAPKTFTREDVIEINCHGGIVTVNKVLQLALREGARLAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S LV +R + +E L
Sbjct: 112 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAITQMEGRLSGLVQRLRGEILETL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
IE +D+ D++ + ++++K ++ +++E+ L T++ K+L+ GL I+GRPN
Sbjct: 172 AHIEVNIDYPEYDDVEEMTHRVLVEKATSVKKEIESLLSTSHQGKILREGLSTVIIGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 232 VGKSSLLNSLVQETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ + + ED +L + S +I+++NK D P
Sbjct: 292 ERSRQVLKEADLILLVLNYSEELSEEDIKLFEAV--------SGMDIIVIVNKTDLEPKL 343
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
E KV D V T + +GI +LE AI + I +G + N R L
Sbjct: 344 DVE--KVKQLAKDRPVVTTSLLQEKGIDELEMAIQSLFFTGSIESGDLTYVSNTRHIALL 401
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+++ IE ++P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 402 QAAKQSIEDALEGIEMDVPIDIVQIDLTRCWEQLGEIIGDAVHESLIDQLFSQFCLGK 459
>gi|257871382|ref|ZP_05651035.1| tRNA modification GTPase mnmE [Enterococcus gallinarum EG2]
gi|357051630|ref|ZP_09112804.1| tRNA modification GTPase mnmE [Enterococcus saccharolyticus 30_1]
gi|257805546|gb|EEV34368.1| tRNA modification GTPase mnmE [Enterococcus gallinarum EG2]
gi|355379554|gb|EHG26711.1| tRNA modification GTPase mnmE [Enterococcus saccharolyticus 30_1]
Length = 465
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 195/479 (40%), Positives = 284/479 (59%), Gaps = 27/479 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVRLSG A+ I VF+ KKK S SH
Sbjct: 8 FDTIAAIST----PPGEGAISIVRLSGEQAISIADAVFQSGKKKLIDVS--------SHT 55
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG + D ++DEV+ M P+++TRED+VE+ CHG V + ++L+ L GA L
Sbjct: 56 IHYGHIFDPEKYQMMDEVMVSIMRKPKTFTREDIVEINCHGGIVVVNQILQLVLRQGARL 115
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ + G S L+ +R + +E
Sbjct: 116 AEPGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMNLAINQLDGNLSRLIRQLRQEILE 175
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L ++E +D+ D++ L L+++K + + + ++ L+TA K+L+ GL AI+GR
Sbjct: 176 TLAQVEVNIDYPEYDDVEELTTRLLLEKANQVQKQIQALLQTAQQGKILREGLSTAIIGR 235
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+DIVEKI
Sbjct: 236 PNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLVDTAGIRETEDIVEKI 295
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS AD+I++ ++ + T+ED +LL+ NK+ I+++NK D P
Sbjct: 296 GVERSRKALSEADLILLVLNQSESLTTEDKQLLDITSGNKR--------IILLNKTDL-P 346
Query: 447 SASNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
S N+ + V N+ +V T +G+ LE AI + + N R
Sbjct: 347 SRINQEDLVPYLENEPALPISVLTSEGLDQLEQAIADLFFGGNTGDKDASYLSNTRHIAL 406
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + + +L + IE +P+D ID+ LG+I G+ + +E+++ +F +FC+GK
Sbjct: 407 LEKAEHSLAEVIQGIESGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465
>gi|386054991|ref|YP_005972549.1| tRNA modification GTPase TrmE [Listeria monocytogenes Finland 1998]
gi|346647642|gb|AEO40267.1| tRNA modification GTPase TrmE [Listeria monocytogenes Finland 1998]
Length = 457
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 197/477 (41%), Positives = 281/477 (58%), Gaps = 26/477 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ I+RLSGP A+ I R+F K+S S + SH
Sbjct: 3 FDTIAAIST----PPGEGAIAIIRLSGPEAIQIADRIFYA------KNSLSDA---ESHT 49
Query: 150 VEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
+ YG + G V++EV+A M APR++TREDVVE+ HG V + RVL+ L GA LA
Sbjct: 50 IHYGHI-KEDGEVIEEVMATVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLRNGANLA 108
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V LI AK+ A A+ + G S L+ ++R + ++
Sbjct: 109 EPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDA 168
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ + ++++K + VE L+TA+ K+L+ GL AI+GRP
Sbjct: 169 LAQVEVNIDYPEYDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRP 228
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN + E+AIVT+IAGTTRD+IE V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 229 NVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIG 288
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD I++ ++ + T+ED L + ++V+NK D
Sbjct: 289 VERSRKALADADFILLVLNQNEELTAEDEALF--------EAAAGHNYVVVLNKTDLETK 340
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
E + N V T V +G++ LE AI + I AG + N R L
Sbjct: 341 LDIEKVREIAGENPIVATSLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLH 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ +AL + + I+ +P+D ID+ A LG+I+G+ + +E+L +F +FC+GK
Sbjct: 401 QALDALNAVTTGIQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457
>gi|113953182|ref|YP_731887.1| tRNA modification GTPase TrmE [Synechococcus sp. CC9311]
gi|123327545|sp|Q0I6N5.1|MNME_SYNS3 RecName: Full=tRNA modification GTPase MnmE
gi|113880533|gb|ABI45491.1| tRNA modification GTPase TrmE [Synechococcus sp. CC9311]
Length = 463
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 197/474 (41%), Positives = 281/474 (59%), Gaps = 24/474 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
+IAAI T++ G + ++RLSGP AV V + G W SH V YG
Sbjct: 11 SIAAIATAVAPGQGGIAVIRLSGPSAVRAVAAI--------TVIPGQQVWE--SHRVLYG 60
Query: 154 VVLDRHG-NVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEA-GATLAQP 211
V+ G +DEVL + MLAPRS+T EDVVE+ CHG + +++VL LE G A P
Sbjct: 61 HVVAAGGVERLDEVLVLVMLAPRSFTGEDVVEIHCHGGVIAVQQVLARVLEQPGVRRALP 120
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEF+ RA LNGRLDL++AE + L+ A+S AA A+AG+ GG + +R + ++ L+
Sbjct: 121 GEFSQRAVLNGRLDLTRAEAIGDLVGARSQRAAQLAMAGLDGGIQKKMVVLRERLLDQLS 180
Query: 272 EIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
E+EAR+DF++++PPLN ++ ++ A+ ++ + +++ GL++A+VGRPNVGK
Sbjct: 181 ELEARVDFEEDLPPLNGEALLQELQAVRLELLTLVADGERGSVVRHGLRVALVGRPNVGK 240
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLN S+ ERAIVT++ GTTRD++E+ + + GVP+TLLDTAGIR T + VEK+G+ RS
Sbjct: 241 SSLLNLLSRRERAIVTDLPGTTRDLLESEIVLDGVPITLLDTAGIRATSNAVEKLGIARS 300
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
AD++++ GW+ +D L I P + V NK D A
Sbjct: 301 RDALASADLVLLLFDLAQGWSDDDQALFALIPEG-------VPCLRVGNKADLPLKAEPV 353
Query: 452 WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVG-LHQIPAGGRRWAVNQRQCEQLMRTK 510
V S D V AVTG G Q L A+++ G L + P A+NQRQ + +
Sbjct: 354 AETVAASVAD-VRLSAVTGDGEQALVQAVLERCGALGEQPL---LLALNQRQSDLAVTAA 409
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
EAL R + + LP DFWTIDLR A +LG+I+GE ++E VL IF +FCIGK
Sbjct: 410 EALARSEQVAADGLPWDFWTIDLRQAIRSLGEITGEQLTESVLDRIFSRFCIGK 463
>gi|375364510|ref|YP_005132549.1| tRNA modification GTPase mnmE [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|421729511|ref|ZP_16168641.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|451344765|ref|YP_007443396.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens IT-45]
gi|371570504|emb|CCF07354.1| tRNA modification GTPase mnmE [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|407076481|gb|EKE49464.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|449848523|gb|AGF25515.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens IT-45]
Length = 459
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 192/476 (40%), Positives = 282/476 (59%), Gaps = 20/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T +G GA+ IVRLSGP AV I +++K K K S+ SH +
Sbjct: 1 MDTIAAISTPMG--EGAIAIVRLSGPEAVKIADKMYKGPKGKTLSSA-------ESHTIH 51
Query: 152 YGVVLDRH-GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG + D G +++EV+ + APR++TREDV+E+ CHG V + +VL+ L GA LA+
Sbjct: 52 YGHIADSTTGRIIEEVMVSVLRAPRTFTREDVIEINCHGGIVTVNQVLQLALREGARLAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S+LV +R + +E L
Sbjct: 112 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRDELLETL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + L+++K + +++E L T+ K+L+ GL I+GRPN
Sbjct: 172 AHVEVNIDYPEYDDVEEMTHQLLVEKASGVKKEIEALLRTSEQGKILREGLSTVIIGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 232 VGKSSLLNSLVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ + + ED +L ++ +I+++NK D
Sbjct: 292 ERSRQVLKEADLILLVLNHSEALSEEDVKLFEAVE--------GMDVIVIMNKTDLEAKI 343
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E K V T + +GIQDLE AI + I +G + N R L +
Sbjct: 344 DAERVKELAKGRPVVTTSLLKEEGIQDLEEAIQSLFYTGAIESGDLTYVSNTRHISILHQ 403
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+A+ + IE+++P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 404 AKQAIDDALNGIEQDVPIDMVQIDLTRCWELLGEIIGDAVHESLIDQLFSQFCLGK 459
>gi|397905900|ref|ZP_10506734.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Caloramator
australicus RC3]
gi|397161068|emb|CCJ34069.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Caloramator
australicus RC3]
Length = 458
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 189/474 (39%), Positives = 294/474 (62%), Gaps = 23/474 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+IG G +GIVRLSG +++I +VFK K K K S+ + YG
Sbjct: 5 TIAAISTAIG--EGGIGIVRLSGDKSLEIASKVFKSAKGKDIKEM-------RSYSMAYG 55
Query: 154 VVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D N ++DEV+ M AP +YTRED+VE+ CHG + +++VL L++GA LA+PG
Sbjct: 56 YIVDPETNEIIDEVILSYMKAPNTYTREDIVEINCHGGVLAVKKVLSVVLKSGARLAEPG 115
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQAE V LI AK+ + + A+ ++G S + S+ K + L
Sbjct: 116 EFTKRAFLNGRIDLSQAEAVIDLIRAKTDDSLNLAVNQLKGKLSQKINSLMDKLLGCLAH 175
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IEA +DF +D++ L +N ++ + + +++ ++ A K+ + GL+ IVG+PNVGK
Sbjct: 176 IEATVDFPEDDVDELVVNKLVSDLQFIVSEIDYLIKNAESGKIFREGLRTTIVGKPNVGK 235
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLNA + +RAIVT+I GTTRDVIE + + GVP+ L+DTAGIR+TDDIVE IGVE+S
Sbjct: 236 SSLLNALLEEKRAIVTDIPGTTRDVIEEYINIDGVPIVLVDTAGIRKTDDIVENIGVEKS 295
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
+ AD+I+ + A ED E+++ I+ +I ++NK+D + +
Sbjct: 296 KEYLQNADLILFMLDASRPLEKEDEEIIDLIKGKN--------VIAILNKMDLPTAIDVD 347
Query: 452 WNKVGNSFNDHVFTCAVTGQ-GIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+ V F HV +V + GI +++ AI+ +V ++ + N R + L++ K
Sbjct: 348 Y--VKGRFK-HVVNASVKKEHGIDEIKKAIVDLVFEGRVSSKNEILVTNVRHKDALVKAK 404
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
E++V+ +I+ LPLD +++L+D+ L LG+I+G ++E+++ IF FCIGK
Sbjct: 405 ESIVKGIETIKSGLPLDLASVELKDSYLKLGEITGNIVAEDIIDRIFCDFCIGK 458
>gi|385267018|ref|ZP_10045105.1| tRNA modification GTPase TrmE [Bacillus sp. 5B6]
gi|429507388|ref|YP_007188572.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|385151514|gb|EIF15451.1| tRNA modification GTPase TrmE [Bacillus sp. 5B6]
gi|429488978|gb|AFZ92902.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 459
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 192/476 (40%), Positives = 283/476 (59%), Gaps = 20/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T +G GA+ IVRLSGP AV+I +++K K K S+ SH +
Sbjct: 1 MDTIAAISTPMG--EGAIAIVRLSGPEAVEIADKMYKGPKGKTLSSA-------ESHTIH 51
Query: 152 YGVVLDRH-GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG + D G +++EV+ + APR++TREDV+E+ CHG V + +VL+ L GA LA+
Sbjct: 52 YGHIADSTTGRIIEEVMVSVLRAPRTFTREDVIEINCHGGIVTVNQVLQLALREGARLAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S+LV +R + +E L
Sbjct: 112 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRDELLETL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + L+++K + +++E L T+ K+L+ GL I+GRPN
Sbjct: 172 AHVEVNIDYPEYDDVEEMTHQLLVEKASGVKKEIEALLRTSEQGKILREGLSTVIIGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 232 VGKSSLLNSLVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ + + ED +L ++ +I+++NK D
Sbjct: 292 ERSRQVLKEADLILLVLNHSEELSEEDVKLFEAVE--------GMDVIVIMNKTDLEAKI 343
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E K V T + +GIQDLE AI + I +G + N R L +
Sbjct: 344 DAERVKELAKGRPVVTTSLLKEEGIQDLEEAIQSLFYTGAIESGDLTYVSNTRHISILHQ 403
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+A+ + IE+++P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 404 AKQAIDDALNGIEQDVPIDMVQIDLTRCWELLGEIIGDAVHESLIDQLFSQFCLGK 459
>gi|78185703|ref|YP_378137.1| tRNA modification GTPase TrmE [Synechococcus sp. CC9902]
gi|123580994|sp|Q3AVY3.1|MNME_SYNS9 RecName: Full=tRNA modification GTPase MnmE
gi|78169997|gb|ABB27094.1| tRNA modification GTPase trmE [Synechococcus sp. CC9902]
Length = 451
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 194/464 (41%), Positives = 287/464 (61%), Gaps = 37/464 (7%)
Query: 107 GAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNV-VDE 165
G + ++RLSGP+A + V + + G W SH + YG V+ G +DE
Sbjct: 19 GGIAVIRLSGPVA--------EQVAQAVVQCPGHQEW--GSHRILYGHVMAVDGQRRLDE 68
Query: 166 VLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLE-AGATLAQPGEFTLRAFLNGRL 224
VL + M APRS+T EDVVE+ CHG + +++VL LE G A PGEF+ RA LNGRL
Sbjct: 69 VLLLLMRAPRSFTGEDVVEIHCHGGVMAVQQVLERVLEHPGVRRALPGEFSQRAVLNGRL 128
Query: 225 DLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMP 284
DL+QAE V +L+SA+S AAD A+AG+ GG + +T +R + ++ LTE+EAR+DF+D++P
Sbjct: 129 DLTQAEAVSELVSARSRRAADLAMAGLDGGIQARITVLRERLLDQLTELEARVDFEDDLP 188
Query: 285 PLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERA 344
PL+ +++++ A+ ++ + L+ GL++A+VGRPNVGKSSLLN S+ ERA
Sbjct: 189 PLDGTALLNELQAVRVELLALVADGERGDALRHGLRVALVGRPNVGKSSLLNRLSRRERA 248
Query: 345 IVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMT 404
IVTE+ GTTRD++E+ + + GVP+TL+DTAGIR T+D VE++G+ RSE + ADV+++
Sbjct: 249 IVTELPGTTRDLLESEIVLDGVPITLMDTAGIRATNDAVEQLGIARSEEALISADVVVLI 308
Query: 405 VSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDC-APSASNEWNKVGNSFNDHV 463
V GWT D++LL RI ++ P ++V NK D P D
Sbjct: 309 VDGHAGWTETDAQLLARIPND-------VPRVVVANKSDLDGPPLPG--------LVDVQ 353
Query: 464 FTCAVTGQGIQDLETAIMKIVGLHQIPAG---GRRWAVNQRQCEQLMRTKEALVRLKSSI 520
F+ A+ G G E A ++++ L + AG G ++N RQ + AL R
Sbjct: 354 FS-ALNGAG----EDAFVQVL-LERCGAGDAAGIVLSLNTRQRDLASVAAAALERSHEVA 407
Query: 521 EEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+++LP DFWTIDLR+A LG+I+GE+++E VL +F +FCIGK
Sbjct: 408 QQQLPWDFWTIDLREAIRGLGEITGEELTEAVLERVFSRFCIGK 451
>gi|52673270|emb|CAH56508.1| putative tRNA modification GTPase trmE [Bacillus amyloliquefaciens
FZB42]
Length = 462
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 192/477 (40%), Positives = 283/477 (59%), Gaps = 20/477 (4%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
+ TIAAI T +G GA+ IVRLSGP AV I +++K K K S+ SH +
Sbjct: 3 SMDTIAAISTPMG--EGAIAIVRLSGPEAVKIADKMYKGPKGKTLSSA-------ESHTI 53
Query: 151 EYGVVLDRH-GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG + D G +++EV+ + APR++TREDV+E+ CHG V + +VL+ L GA LA
Sbjct: 54 HYGHIADSTTGRIIEEVMVSVLRAPRTFTREDVIEINCHGGIVTVNQVLQLALREGARLA 113
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S+LV +R + +E
Sbjct: 114 EPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRDELLET 173
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L +E +D+ D++ + L+++K + +++E L T+ K+L+ GL I+GRP
Sbjct: 174 LAHVEVNIDYPEYDDVEEMTHQLLVEKASGVKKEIEALLRTSEQGKILREGLSTVIIGRP 233
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IG
Sbjct: 234 NVGKSSLLNSLVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIG 293
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS V AD+I++ ++ + + ED +L ++ +I+++NK D
Sbjct: 294 VERSRQVLKEADLILLVLNHSEELSEEDVKLFEAVE--------GMDVIVIMNKTDLEAK 345
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
E K V T + +GIQDLE AI + I +G + N R L
Sbjct: 346 IDAERVKELAKGRPVVTTSLLKEEGIQDLEEAIQSLFYTGAIESGDLTYVSNTRHISILH 405
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K+A+ + IE+++P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 406 QAKQAIDDALNGIEQDVPIDMVQIDLTRCWELLGEIIGDAVHESLIDQLFSQFCLGK 462
>gi|423410773|ref|ZP_17387893.1| tRNA modification GTPase mnmE [Bacillus cereus BAG3O-2]
gi|423433442|ref|ZP_17410446.1| tRNA modification GTPase mnmE [Bacillus cereus BAG4O-1]
gi|401109505|gb|EJQ17428.1| tRNA modification GTPase mnmE [Bacillus cereus BAG3O-2]
gi|401111860|gb|EJQ19742.1| tRNA modification GTPase mnmE [Bacillus cereus BAG4O-1]
Length = 458
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 188/476 (39%), Positives = 285/476 (59%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ VGR+FK G SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKVGRIFK----------GKDLTEVPSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R + +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++E LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L +Q + I+++NK D +
Sbjct: 291 ERSKEMMSQADLVLVVVNYSEALTNEDEDLFRAVQGKE--------FIVIVNKTDLPQAI 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + N + T + QGI +LE AI + I + + N R L +
Sbjct: 343 DMERVTELAAGNRVITTSLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQ 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 403 AGKTIGDAVEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|149182297|ref|ZP_01860776.1| tRNA modification GTPase [Bacillus sp. SG-1]
gi|148849989|gb|EDL64160.1| tRNA modification GTPase [Bacillus sp. SG-1]
Length = 461
Score = 329 bits (843), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 193/478 (40%), Positives = 280/478 (58%), Gaps = 24/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG A DI +VFK +K G+ SH +
Sbjct: 3 FDTIAAISTPMG--EGAIAIVRLSGDQAFDIADKVFKGIK-------GNSVHEFASHTIN 53
Query: 152 YGVVLDRH-GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G VV+EV+ M P+++TRED++E+ CHG V + +VL+ L+ GA LA+
Sbjct: 54 YGHIVDSSTGAVVEEVMMSVMKGPKTFTREDIIEINCHGGLVSVNKVLQLVLKNGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL ++G S L+ +R + +E L
Sbjct: 114 PGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDRAMNVALNQMEGRLSKLIRKLRQEILETL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + ++++K + ++E L T+ K+L+ GL IVGRPN
Sbjct: 174 AHVEVNIDYPEYDDVEEMTHGVLLEKSKYVRDEIEKLLRTSEQGKILREGLSTVIVGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 234 VGKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ D +T ED +L ++ +I+++NK D
Sbjct: 294 ERSRQVLKEADLILLVLNYSDEFTYEDEQLFKAVE--------GMDVIVIVNKTDLPQKI 345
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ ++V +H V T + QGI +LE AI + + AG + N R L
Sbjct: 346 --DMDRVKELAAEHAVVTTSLLEEQGIDELEEAISTLFFAGSLEAGDMTYVSNSRHIALL 403
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ A+ + +E P+D IDL LG+I GE + E ++ +F +FC+GK
Sbjct: 404 NQAHGAIDEAINGVEMGTPIDIAQIDLTRTWELLGEIIGESVHESLIDQLFSQFCLGK 461
>gi|229065143|ref|ZP_04200436.1| tRNA modification GTPase mnmE [Bacillus cereus AH603]
gi|423513065|ref|ZP_17489595.1| tRNA modification GTPase mnmE [Bacillus cereus HuA2-1]
gi|228716172|gb|EEL67891.1| tRNA modification GTPase mnmE [Bacillus cereus AH603]
gi|402446108|gb|EJV77971.1| tRNA modification GTPase mnmE [Bacillus cereus HuA2-1]
Length = 458
Score = 329 bits (843), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 191/479 (39%), Positives = 285/479 (59%), Gaps = 29/479 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG A++ V R+FK G + +SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAIEKVDRIFK----------GKDLTQVSSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L GA LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGARLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R + +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGHLRQEILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
IE +D+ D++ + N++++K + ++ LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHIEVNIDYPEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGISTAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L +Q I+++NK D
Sbjct: 291 ERSKEMMSQADLVLIVVNYSEALTNEDEDLFRAVQGK--------DFIVIVNKTDLPQEI 342
Query: 449 SNEWNK---VGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
E VGN + T + QGI +LE AI + I + + N R
Sbjct: 343 DMERVTDLAVGNRV---ITTSLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGL 399
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + + +IE +P+D IDL A LG+I+G+ + E ++ +F +FC+GK
Sbjct: 400 LTQAGRTINDAIEAIENGVPIDMVQIDLTRAWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|387900758|ref|YP_006331054.1| tRNA modification GTPase [Bacillus amyloliquefaciens Y2]
gi|387174868|gb|AFJ64329.1| tRNA modification GTPase [Bacillus amyloliquefaciens Y2]
Length = 462
Score = 328 bits (842), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 192/477 (40%), Positives = 283/477 (59%), Gaps = 20/477 (4%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
+ TIAAI T +G GA+ IVRLSGP AV I +++K K K S+ SH +
Sbjct: 3 SMDTIAAISTPMG--EGAIAIVRLSGPEAVKIADKMYKGPKGKTLSSA-------ESHTI 53
Query: 151 EYGVVLDRH-GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG + D G +++EV+ + APR++TREDV+E+ CHG V + +VL+ L GA LA
Sbjct: 54 HYGHIADSTTGRIIEEVMVSVLRAPRTFTREDVIEINCHGGIVTVNQVLQLALREGARLA 113
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S+LV +R + +E
Sbjct: 114 EPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRDELLET 173
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L +E +D+ D++ + L+++K + +++E L T+ K+L+ GL I+GRP
Sbjct: 174 LAHVEVNIDYPEYDDVEEMTHQLLVEKAGGVKKEIEALLRTSEQGKILREGLSTVIIGRP 233
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IG
Sbjct: 234 NVGKSSLLNSLVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIG 293
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS V AD+I++ ++ + + ED +L ++ +I+++NK D
Sbjct: 294 VERSRQVLKEADLILLVLNHSEELSEEDVKLFEAVE--------GMDVIVIMNKTDLEAK 345
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
E K V T + +GIQDLE AI + I +G + N R L
Sbjct: 346 IDAERVKELAKGRPVVTTSLLKEEGIQDLEEAIQSLFYTGAIESGDLTYVSNTRHISILH 405
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K+A+ + IE+++P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 406 QAKQAIDDALNGIEQDVPIDMVQIDLTRCWELLGEIIGDAVHESLIDQLFSQFCLGK 462
>gi|116072006|ref|ZP_01469274.1| tRNA modification GTPase [Synechococcus sp. BL107]
gi|116065629|gb|EAU71387.1| tRNA modification GTPase [Synechococcus sp. BL107]
Length = 451
Score = 328 bits (842), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 191/464 (41%), Positives = 287/464 (61%), Gaps = 37/464 (7%)
Query: 107 GAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNV-VDE 165
G + ++RLSGP+A + V + + G W SH + YG V+ G +DE
Sbjct: 19 GGIAVIRLSGPVA--------EQVGQAVVRCPGRQEW--GSHRILYGHVMAVDGQRRLDE 68
Query: 166 VLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEA-GATLAQPGEFTLRAFLNGRL 224
VL + M APRS+T EDVVE+ CHG + +++V+ LE G A PGEF+ RA LNGRL
Sbjct: 69 VLLLLMRAPRSFTGEDVVEIHCHGGVMAVQQVMERVLEQPGVRRALPGEFSQRAVLNGRL 128
Query: 225 DLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMP 284
DL+QAE V L+SA+S AAD A+AG+ GG + +T++R + ++ LTE+EAR+DF+D++P
Sbjct: 129 DLTQAEAVSALVSARSRRAADLAMAGLDGGIQARITALRERLLDQLTELEARVDFEDDLP 188
Query: 285 PLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERA 344
PL+ +++++ A+ ++ + L+ GL++A+VGRPNVGKSSLLN S+ ERA
Sbjct: 189 PLDGTALLNELQAVRTELLALVADGERGDALRHGLRVALVGRPNVGKSSLLNRLSRRERA 248
Query: 345 IVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMT 404
IVTE+ GTTRD++E+ + + GVP+TL+DTAGIR T+D VE++G+ RSE + AD++++
Sbjct: 249 IVTELPGTTRDLLESEIVLDGVPITLMDTAGIRATNDAVEQLGIARSEEALMSADLVLLI 308
Query: 405 VSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDC-APSASNEWNKVGNSFNDHV 463
V GWT D++LL RI ++ P ++V NK D P E + V
Sbjct: 309 VDGHAGWTETDAQLLARI-------PNAVPRVVVANKSDLDGPPLPREVD---------V 352
Query: 464 FTCAVTGQGIQDLETAIMKIVGLHQIPAGGRR---WAVNQRQCEQLMRTKEALVRLKSSI 520
A+ G G E A+++++ L + AG ++N RQ + AL R
Sbjct: 353 QFSALNGAG----EDALVQVL-LERCGAGDAAAIVLSLNTRQRDLASAAAAALARSHEVA 407
Query: 521 EEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+++LP DFWTIDLR+A LG+I+GE+++E VL +F +FCIGK
Sbjct: 408 QQQLPWDFWTIDLREAIRGLGEITGEELTEAVLERVFSRFCIGK 451
>gi|154688207|ref|YP_001423368.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens FZB42]
gi|308175809|ref|YP_003922514.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens DSM 7]
gi|384161697|ref|YP_005543770.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens TA208]
gi|384166619|ref|YP_005547998.1| tRNA modification GTPase mnmE [Bacillus amyloliquefaciens LL3]
gi|384170810|ref|YP_005552188.1| tRNA modification GTPase [Bacillus amyloliquefaciens XH7]
gi|394994142|ref|ZP_10386872.1| tRNA modification GTPase TrmE [Bacillus sp. 916]
gi|205829057|sp|A7ZAW1.1|MNME_BACA2 RecName: Full=tRNA modification GTPase MnmE
gi|154354058|gb|ABS76137.1| TrmE [Bacillus amyloliquefaciens FZB42]
gi|307608673|emb|CBI45044.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens DSM 7]
gi|328555785|gb|AEB26277.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens TA208]
gi|328914174|gb|AEB65770.1| tRNA modification GTPase mnmE [Bacillus amyloliquefaciens LL3]
gi|341830089|gb|AEK91340.1| tRNA modification GTPase [Bacillus amyloliquefaciens XH7]
gi|393805028|gb|EJD66417.1| tRNA modification GTPase TrmE [Bacillus sp. 916]
Length = 459
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 192/476 (40%), Positives = 282/476 (59%), Gaps = 20/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T +G GA+ IVRLSGP AV I +++K K K S+ SH +
Sbjct: 1 MDTIAAISTPMG--EGAIAIVRLSGPEAVKIADKMYKGPKGKTLSSA-------ESHTIH 51
Query: 152 YGVVLDRH-GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG + D G +++EV+ + APR++TREDV+E+ CHG V + +VL+ L GA LA+
Sbjct: 52 YGHIADSTTGRIIEEVMVSVLRAPRTFTREDVIEINCHGGIVTVNQVLQLALREGARLAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S+LV +R + +E L
Sbjct: 112 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRDELLETL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + L+++K + +++E L T+ K+L+ GL I+GRPN
Sbjct: 172 AHVEVNIDYPEYDDVEEMTHQLLVEKASGVKKEIEALLRTSEQGKILREGLSTVIIGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 232 VGKSSLLNSLVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ + + ED +L ++ +I+++NK D
Sbjct: 292 ERSRQVLKEADLILLVLNHSEELSEEDVKLFEAVE--------GMDVIVIMNKTDLEAKI 343
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E K V T + +GIQDLE AI + I +G + N R L +
Sbjct: 344 DAERVKELAKGRPVVTTSLLKEEGIQDLEEAIQSLFYTGAIESGDLTYVSNTRHISILHQ 403
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+A+ + IE+++P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 404 AKQAIDDALNGIEQDVPIDMVQIDLTRCWELLGEIIGDAVHESLIDQLFSQFCLGK 459
>gi|116874162|ref|YP_850943.1| tRNA modification GTPase TrmE [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|123458786|sp|A0AMD2.1|MNME_LISW6 RecName: Full=tRNA modification GTPase MnmE
gi|116743040|emb|CAK22164.1| tRNA modification GTPase TrmE [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 457
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 198/479 (41%), Positives = 280/479 (58%), Gaps = 30/479 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ I+RLSGP A+ I R+F KK S SH
Sbjct: 3 FDTIAAIST----PPGEGAIAIIRLSGPEAIQIADRIFYA---KKNLSEAE------SHT 49
Query: 150 VEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
+ YG + G V++EV+ M APR++TREDVVE+ HG V + RVL+ L GA LA
Sbjct: 50 IHYGHI-KEDGEVIEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLRNGANLA 108
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V LI AK+ A A+ + G S L+ ++R + ++
Sbjct: 109 EPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDA 168
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ + ++++K + VE L+TA+ K+L+ GL AI+GRP
Sbjct: 169 LAQVEVNIDYPEYDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRP 228
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN + E+AIVT+IAGTTRD+IE V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 229 NVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIG 288
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD I++ ++ + T ED L + ++V+NK D
Sbjct: 289 VERSRKALADADFILLVLNQNEELTVEDEALF--------EAAAGHNYVVVLNKTDLETK 340
Query: 448 ASNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+ NKV ++ V T V +G++ LE AI + I AG + N R
Sbjct: 341 L--DINKVRELAGENPIVSTSLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIAL 398
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + EAL + + I+ +P+D ID+ A LG+I+G+ + +E+L +F +FC+GK
Sbjct: 399 LHQALEALNAVTTGIQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457
>gi|323703263|ref|ZP_08114914.1| tRNA modification GTPase TrmE [Desulfotomaculum nigrificans DSM
574]
gi|323531728|gb|EGB21616.1| tRNA modification GTPase TrmE [Desulfotomaculum nigrificans DSM
574]
Length = 461
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 193/478 (40%), Positives = 293/478 (61%), Gaps = 26/478 (5%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWR-PTSHVVE 151
TI AI T +G ++G++R+SGP A+ I RVF P K K W ++ +
Sbjct: 4 DTIVAIATPLG--EASIGVIRISGPDAIAIGRRVFVPKKNK--------DWYIKDNYKLV 53
Query: 152 YGVVLDRHG-NVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG V+D V+DEVL M P S+T EDVVE+ CHG V LRRVL+ L GA LA+
Sbjct: 54 YGHVVDPDTREVLDEVLLSVMRGPHSFTAEDVVEISCHGGIVPLRRVLQLVLNQGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEF+ RAF+NGRLDL+QAE + +I AK+ A A A++ + G SS + S++ + LL
Sbjct: 114 PGEFSKRAFINGRLDLAQAEAIIDIIRAKTDAGAKVAMSQLDGRLSSEIISLQTDILGLL 173
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+IEA +DF +D++ L+ + + + M Q V L+ A+ K+ + GLQ I+G+PNV
Sbjct: 174 AKIEAIIDFPEDDIEEATLDEIAAQCNIMLQKVNTLLDNADTGKIYREGLQTVIIGKPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA K +RAIVT+I GTTRD+IE + + GVP+ ++DTAG+RETDD+VEK+GV
Sbjct: 234 GKSSLLNALLKEQRAIVTDIPGTTRDIIEEFLNIQGVPLKIIDTAGLRETDDLVEKLGVA 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS + AD++++ + A G T +D ++++ ++ K +++INKID A +
Sbjct: 294 RSRQLINQADLVLLVLDATTGITEDDLKIISLVKDKK--------TLVLINKIDIAANRI 345
Query: 450 NEWNKVGNSFNDHVFTCAVTGQ---GIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
N +K+ D FT ++ + G+ LE AI+++V ++ A N R + L
Sbjct: 346 NS-DKIKRYLGDS-FTLEISAKQEIGLDKLEQAILELVLAGKVTAADNVIISNTRHKQAL 403
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+R K+ L ++ I+E +P D +IDL+ A LG+I+G +++E+++ IF FCIGK
Sbjct: 404 VRAKQHLQEVQRGIKEFVPADLISIDLKSAWEILGEITGNNVTEDLIDRIFADFCIGK 461
>gi|259048142|ref|ZP_05738543.1| tRNA modification GTPase TrmE [Granulicatella adiacens ATCC 49175]
gi|259035203|gb|EEW36458.1| tRNA modification GTPase TrmE [Granulicatella adiacens ATCC 49175]
Length = 462
Score = 328 bits (841), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 187/476 (39%), Positives = 283/476 (59%), Gaps = 21/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T+ G GA+GIVR+SG A+ I V++ +K+ + SH +
Sbjct: 5 FDTIAAISTAPG--EGAIGIVRISGEDAIRIADEVYRLKEKRLNEQP--------SHTIH 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++ V+DEV+ + AP+++TREDVVE+ CHG V + R+L+ L GA LA+
Sbjct: 55 YGHIVDPKNDEVIDEVMVTVLRAPKTFTREDVVEINCHGGIVAINRILQLVLRRGARLAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ + A+ + G S L+ ++R + + L
Sbjct: 115 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDKSMQMAMRQLDGELSKLIQNLRQEILNTL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L L+ +K +SQ + L TA+ K+L+ GL+ AIVGRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTLQLLREKTQQVSQGIRALLNTASQGKILRDGLKAAIVGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+IAGTTRD IE V V GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 235 VGKSSLLNVLLREEKAIVTDIAGTTRDTIEEYVNVRGVPLQLIDTAGIRETDDVVERIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD +++ ++ + ED LL + + K+ I+++NK D
Sbjct: 295 ERSRKALNEADFVLLILNQSEELRDEDLRLLEQTKDFKR--------IILLNKTDLPTKI 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ K + ++ V T + +GI LE I Q+ + N R L +
Sbjct: 347 DMDKVKEFATDSEIVTTSMLKKEGIDQLEEKIADYFFQGQMNERDATYLSNTRHIALLEK 406
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++AL + + ++ +P+D ID A LG+I+G+ + +E+L+ +F +FC+GK
Sbjct: 407 AEQALQEVANGVDMGMPVDLIQIDFTRAWDLLGEITGDTVQDELLTQLFSQFCLGK 462
>gi|229170187|ref|ZP_04297873.1| tRNA modification GTPase mnmE [Bacillus cereus AH621]
gi|423520141|ref|ZP_17496622.1| tRNA modification GTPase mnmE [Bacillus cereus HuA2-4]
gi|228613288|gb|EEK70427.1| tRNA modification GTPase mnmE [Bacillus cereus AH621]
gi|401156734|gb|EJQ64137.1| tRNA modification GTPase mnmE [Bacillus cereus HuA2-4]
Length = 458
Score = 328 bits (841), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 190/479 (39%), Positives = 285/479 (59%), Gaps = 29/479 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG A++ V R+FK G + +SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAIEKVDRIFK----------GKDLTQVSSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R + +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGHLRQEILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
IE +D+ D++ + N++++K + ++ LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHIEVNIDYPEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGISTAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L + +Q I+++NK D
Sbjct: 291 ERSKEMMSQADLVLIVVNYSEALTNEDEDLFHAVQGK--------DFIVIVNKTDLPQEI 342
Query: 449 SNEWNK---VGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
E VGN + T + QGI +LE AI + I + + N R
Sbjct: 343 DMERVTDLAVGNRV---ITTSLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGL 399
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + + +IE +P+D IDL A LG+I+G+ + E ++ +F +FC+GK
Sbjct: 400 LTQAGRTINDAIEAIENGVPIDMVQIDLTRAWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|228942633|ref|ZP_04105165.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228975563|ref|ZP_04136115.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228982199|ref|ZP_04142488.1| tRNA modification GTPase mnmE [Bacillus thuringiensis Bt407]
gi|384189573|ref|YP_005575469.1| tRNA modification GTPase TrmE [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410677898|ref|YP_006930269.1| tRNA modification GTPase MnmE [Bacillus thuringiensis Bt407]
gi|423386966|ref|ZP_17364221.1| tRNA modification GTPase mnmE [Bacillus cereus BAG1X1-2]
gi|423526702|ref|ZP_17503147.1| tRNA modification GTPase mnmE [Bacillus cereus HuB1-1]
gi|452201994|ref|YP_007482075.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|228777551|gb|EEM25829.1| tRNA modification GTPase mnmE [Bacillus thuringiensis Bt407]
gi|228784173|gb|EEM32200.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228817059|gb|EEM63152.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326943282|gb|AEA19178.1| tRNA modification GTPase TrmE [Bacillus thuringiensis serovar
chinensis CT-43]
gi|401630818|gb|EJS48616.1| tRNA modification GTPase mnmE [Bacillus cereus BAG1X1-2]
gi|402454574|gb|EJV86364.1| tRNA modification GTPase mnmE [Bacillus cereus HuB1-1]
gi|409177027|gb|AFV21332.1| tRNA modification GTPase MnmE [Bacillus thuringiensis Bt407]
gi|452107387|gb|AGG04327.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 458
Score = 328 bits (840), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 187/476 (39%), Positives = 284/476 (59%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ V R+FK G +SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKVDRIFK----------GKDLTEVSSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R + +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQEILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++E LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L + +Q I+++NK D +
Sbjct: 291 ERSKEMMSQADLVLVVVNYSEALTNEDEDLFHAVQGK--------DFIVIVNKTDLPQAI 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E N + T + QGI +LE AI + I + + N R L +
Sbjct: 343 DMERVTELAEGNRVITTSLIEEQGIDELEKAIADLFFEGTIDSTDMTYVSNARHIGLLTQ 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 403 AGQTIGDAIEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|296134494|ref|YP_003641741.1| tRNA modification GTPase TrmE [Thermincola potens JR]
gi|296033072|gb|ADG83840.1| tRNA modification GTPase TrmE [Thermincola potens JR]
Length = 458
Score = 328 bits (840), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 191/472 (40%), Positives = 278/472 (58%), Gaps = 18/472 (3%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T IG +GI+R+SG A++IV R+F+ KK SH + YG
Sbjct: 4 TIAAIGTPIGA--AGIGIIRVSGEDAIEIVDRIFRSKNKKN-------LHEVPSHNIVYG 54
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
++D G V+DEVL MLAP+S+T E+VVE+ CHG V +R+ L A L+AGA LA+PGE
Sbjct: 55 HIVDEKGEVIDEVLVTVMLAPKSFTTENVVEINCHGGTVAVRKTLEAVLKAGARLAEPGE 114
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
F RAFLNGR+DL+QAE++ LI+AK+ A+ A+ ++G S+ + +RAK +EL I
Sbjct: 115 FAKRAFLNGRIDLAQAESIMDLINAKTAASLRVAVGQLEGKLSAQIKDIRAKLLELRAHI 174
Query: 274 EARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
EA +DF + ++ L+ + + ++ LE+A+ K+ + GL+ I+G+PNVGKS
Sbjct: 175 EAGIDFPEHDIEDLSKEQIKVATVELKSRIDKILESADSGKIFREGLKTVIIGKPNVGKS 234
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNA K +RAIVT+I GTTRDVIE V++ G+P+ +LDTAGIRET+D+VEKIGV+RS+
Sbjct: 235 SLLNALVKEKRAIVTDIPGTTRDVIEEFVSIRGIPLKILDTAGIRETEDVVEKIGVQRSK 294
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
AD + V +SED E+ ++ I++ NK D + +
Sbjct: 295 EALEQADFFLFVVDVASEISSEDMEIAAFLK--------DLSGIIIANKTDLTGGLNRDL 346
Query: 453 NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEA 512
K V + GQG+ +LE I+ IV ++ + N R L E
Sbjct: 347 QKELGLDVPVVAMSLLNGQGLDELEEKIVDIVYNNEFHSVDEILVSNVRHERALTAASEY 406
Query: 513 LVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + ++ +P+D TIDL A LG+I+GE + E++L IF +FCIGK
Sbjct: 407 LTGVLETLANNMPMDCVTIDLNSAWEELGKITGETVGEDLLDQIFSQFCIGK 458
>gi|384267616|ref|YP_005423323.1| tRNA modification GTPase mnmE [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|380500969|emb|CCG52007.1| tRNA modification GTPase mnmE [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
Length = 459
Score = 328 bits (840), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 192/476 (40%), Positives = 282/476 (59%), Gaps = 20/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T +G GA+ IVRLSGP AV I +++K K K S+ SH +
Sbjct: 1 MDTIAAISTPMG--EGAIAIVRLSGPEAVKIADKMYKGPKGKTLSSA-------ESHTIH 51
Query: 152 YGVVLDRH-GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG + D G +++EV+ + APR++TREDV+E+ CHG V + +VL+ L GA LA+
Sbjct: 52 YGHIADSTTGRIIEEVMVSVLRAPRTFTREDVIEINCHGGIVTVNQVLQLALREGARLAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S+LV +R + +E L
Sbjct: 112 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRDELLETL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + L+++K + +++E L T+ K+L+ GL I+GRPN
Sbjct: 172 AHVEVNIDYPEYDDVEEMTHQLLVEKAGGVKKEIEALLRTSEQGKILREGLSTVIIGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 232 VGKSSLLNSLVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ + + ED +L ++ +I+++NK D
Sbjct: 292 ERSRQVLKEADLILLVLNHSEELSEEDVKLFEAVE--------GMDVIVIMNKTDLEAKI 343
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E K V T + +GIQDLE AI + I +G + N R L +
Sbjct: 344 DAERVKELAKGRPVVTTSLLKEEGIQDLEEAIQSLFYTGAIESGDLTYVSNTRHISILHQ 403
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+A+ + IE+++P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 404 AKQAIDDALNGIEQDVPIDMVQIDLTRCWELLGEIIGDAVHESLIDQLFSQFCLGK 459
>gi|333924891|ref|YP_004498471.1| tRNA modification GTPase mnmE [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|333750452|gb|AEF95559.1| tRNA modification GTPase mnmE [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 461
Score = 328 bits (840), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 193/478 (40%), Positives = 292/478 (61%), Gaps = 26/478 (5%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWR-PTSHVVE 151
TI AI T +G ++G++R+SGP A+ I RVF P K K W ++ +
Sbjct: 4 DTIVAIATPLG--EASIGVIRISGPDAIAIGRRVFVPKKNK--------DWYIKDNYKLV 53
Query: 152 YGVVLDRHG-NVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG V+D V+DEVL M P S+T EDVVE+ CHG V LRRVL+ L GA LA+
Sbjct: 54 YGHVVDPDTREVLDEVLLSVMRGPHSFTAEDVVEISCHGGIVPLRRVLQLVLNQGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEF+ RAF+NGRLDL+QAE + +I AK+ A A A++ + G SS + S++ + LL
Sbjct: 114 PGEFSKRAFINGRLDLAQAEAIIDIIRAKTDAGAKVAMSQLDGRLSSEIISLQTDILGLL 173
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+IEA +DF +D++ L+ + + M Q V L+ A+ K+ + GLQ I+G+PNV
Sbjct: 174 AKIEAIIDFPEDDIEEATLDEIAAQCDIMLQKVNTLLDNADTGKIYREGLQTVIIGKPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA K +RAIVT+I GTTRD+IE + + GVP+ ++DTAG+RETDD+VEK+GV
Sbjct: 234 GKSSLLNALLKEQRAIVTDIPGTTRDIIEEFLNIQGVPLKIIDTAGLRETDDLVEKLGVA 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS + AD++++ + A G T +D ++++ ++ K +++INKID A +
Sbjct: 294 RSRQLINQADLVLLVLDATTGITEDDLKIISLVKDKK--------TLVLINKIDIAANRI 345
Query: 450 NEWNKVGNSFNDHVFTCAVTGQ---GIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
N +K+ D FT ++ + G+ LE AI+++V ++ A N R + L
Sbjct: 346 NS-DKIKRYLGDS-FTLEISAKQEIGLDKLEQAILELVLAGKVTAADNVIISNTRHKQAL 403
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+R K+ L ++ I+E +P D +IDL+ A LG+I+G +++E+++ IF FCIGK
Sbjct: 404 VRAKQHLQEVQRGIKEFVPADLISIDLKSAWEILGEITGNNVTEDLIDRIFADFCIGK 461
>gi|229072949|ref|ZP_04206145.1| tRNA modification GTPase mnmE [Bacillus cereus F65185]
gi|228710195|gb|EEL62173.1| tRNA modification GTPase mnmE [Bacillus cereus F65185]
Length = 458
Score = 327 bits (839), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 187/476 (39%), Positives = 284/476 (59%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ V R+FK G +SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKVNRIFK----------GKDLTEVSSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R + +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++E LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L +Q I+++NK D +
Sbjct: 291 ERSKEMMSQADLVLVVVNYSEALTNEDEDLFRAVQGK--------DFIVIVNKTDLPQAI 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + N + T + QGI +LE AI + I + + N R L +
Sbjct: 343 DMERVTELAAGNRVITTSLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQ 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 403 AGKTIGDAVEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|389574642|ref|ZP_10164702.1| tRNA modification GTPase TrmE [Bacillus sp. M 2-6]
gi|388425764|gb|EIL83589.1| tRNA modification GTPase TrmE [Bacillus sp. M 2-6]
Length = 459
Score = 327 bits (839), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 191/478 (39%), Positives = 286/478 (59%), Gaps = 24/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T +G GA+ I+RLSGP AV I R++K K+KK S S H +
Sbjct: 1 MDTIAAISTPMG--EGAIAIIRLSGPDAVQIADRMYKGPKEKKLVSVDS-------HTIH 51
Query: 152 YGVVLDRHG-NVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + V++EV+ + AP+++TREDV+E+ CHG V + +VL+ L+ GA LA+
Sbjct: 52 YGHIVDSNTEQVIEEVMVSVLRAPKTFTREDVIEINCHGGIVTVNKVLQLALKEGARLAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R + +E L
Sbjct: 112 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAMTQMEGRLSGLIKRLRGEILETL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + ++++K ++ +++E+ L T+ K+L+ GL I+GRPN
Sbjct: 172 AHVEVNIDYPEYDDVEEMTHRVLVEKATSVKKEIESLLTTSQQGKILREGLSTVIIGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 232 VGKSSLLNSLVQETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ + + ED +L + S +I+++NK D P
Sbjct: 292 ERSRQVLKEADLILLVLNYSEELSEEDIKLFEAV--------SGMDIIVIVNKTDLEPKL 343
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
E KV D V T + +GI +LE AI + I +G + N R L
Sbjct: 344 DVE--KVKELAKDRPVVTTSLLQEKGIDELEMAIQSLFFTGSIESGDLTYVSNTRHIALL 401
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+++ IE ++P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 402 QEAKQSIEDALEGIEMDVPIDIVQIDLTRCWEQLGEIIGDAVHESLIDQLFSQFCLGK 459
>gi|228911324|ref|ZP_04075128.1| tRNA modification GTPase mnmE [Bacillus thuringiensis IBL 200]
gi|228848342|gb|EEM93192.1| tRNA modification GTPase mnmE [Bacillus thuringiensis IBL 200]
Length = 458
Score = 327 bits (839), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 188/476 (39%), Positives = 284/476 (59%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ V R+FK G SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKVDRIFK----------GKDLTEVPSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R + +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++E LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L + IQ I+++NK D +
Sbjct: 291 ERSKEMMSQADLVLVVVNYSEALTNEDEDLFHAIQGK--------DFIVIVNKTDLPQAI 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + N + T + QGI +LE AI + I + + N R L +
Sbjct: 343 DMERVTKLAAGNRVITTSLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQ 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 403 AGQTIGDAIEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|423671032|ref|ZP_17646061.1| tRNA modification GTPase mnmE [Bacillus cereus VDM034]
gi|423672745|ref|ZP_17647684.1| tRNA modification GTPase mnmE [Bacillus cereus VDM062]
gi|401294526|gb|EJS00154.1| tRNA modification GTPase mnmE [Bacillus cereus VDM034]
gi|401311259|gb|EJS16566.1| tRNA modification GTPase mnmE [Bacillus cereus VDM062]
Length = 458
Score = 327 bits (839), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 190/479 (39%), Positives = 284/479 (59%), Gaps = 29/479 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG A++ V R+FK G + +SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAIEKVDRIFK----------GKDLTQVSSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R + +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGHLRQEILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
IE +D+ D++ + N++++K + ++ LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHIEVNIDYPEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGISTAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L +Q I+++NK D
Sbjct: 291 ERSKEMMSQADLVLIVVNYSEALTNEDEDLFRAVQGK--------DFIVIVNKTDLPQEI 342
Query: 449 SNEWNK---VGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
E VGN + T + QGI +LE AI + I + + N R
Sbjct: 343 DMERVTDLAVGNRI---ITTSLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGL 399
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + + +IE +P+D IDL A LG+I+G+ + E ++ +F +FC+GK
Sbjct: 400 LTQAGRTINDAIEAIENGVPIDMVQIDLTRAWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|194016355|ref|ZP_03054969.1| tRNA modification GTPase TrmE [Bacillus pumilus ATCC 7061]
gi|194011828|gb|EDW21396.1| tRNA modification GTPase TrmE [Bacillus pumilus ATCC 7061]
Length = 459
Score = 327 bits (839), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 193/478 (40%), Positives = 284/478 (59%), Gaps = 24/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T +G GA+ I+RLSGP AV I R++K K+KK S S H +
Sbjct: 1 MDTIAAISTPMG--EGAIAIIRLSGPEAVQIADRMYKGPKEKKLVSVDS-------HTIH 51
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D R V++EV+ + AP+++TREDV+E+ CHG V + +VL+ L GA LA+
Sbjct: 52 YGHIVDARTDQVIEEVMVSVLRAPKTFTREDVIEINCHGGIVTVNKVLQLALREGARLAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S LV +R + +E L
Sbjct: 112 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAITQMEGRLSGLVQRLRGEILETL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
IE +D+ D++ + ++++K ++ +++E+ L T+ K+L+ GL I+GRPN
Sbjct: 172 AHIEVNIDYPEYDDVEEMTHRVLVEKATSVKKEIESLLSTSQQGKILREGLSTVIIGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 232 VGKSSLLNSLVQETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ + + ED +L + S +I+++NK D P
Sbjct: 292 ERSRQVLKEADLILLVLNYSEELSEEDIKLFEAV--------SGMDIIVIVNKTDLEPKL 343
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
E KV D V T + +GI +LE AI + I +G + N R L
Sbjct: 344 DVE--KVKQLAKDRPVVTTSLLQEKGIDELEMAIQSLFFTGSIESGDLTYVSNTRHIALL 401
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+++ I ++P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 402 QAAKQSIEDALEGIAMDVPIDIVQIDLTRCWEQLGEIIGDAVHESLIDQLFSQFCLGK 459
>gi|398309098|ref|ZP_10512572.1| tRNA modification GTPase TrmE [Bacillus mojavensis RO-H-1]
Length = 462
Score = 327 bits (839), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 280/476 (58%), Gaps = 20/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T +G GA+ IVRLSGP A+ I R++K K K S SH +
Sbjct: 4 MDTIAAISTPMG--EGAIAIVRLSGPEAIQIADRIYKGPKGKTISSV-------ESHTIH 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D R VV+EV+ + APR++TREDV+E+ CHG V + +VL+ L GA LA+
Sbjct: 55 YGHIVDKRTDRVVEEVMVSVLKAPRTFTREDVIEINCHGGIVTVNQVLQLALREGARLAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL ++G S+LV +R +E L
Sbjct: 115 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVALNQMEGRLSALVRRLRDDILETL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + L+++K ++ +++E L T+ K+L+ GL I+GRPN
Sbjct: 175 AHVEVNIDYPEYDDVEEMTHQLLVEKASSVKKEIEALLRTSEQGKILREGLSTVIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 235 VGKSSLLNSLVHEAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ + + ED +L ++ +I+++NK D
Sbjct: 295 ERSRQVLKEADLILLVLNYSEELSEEDVKLFEAVK--------GMDVIVIMNKTDLEAKI 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + + V T + +G+ DLE AI + I +G + N R L
Sbjct: 347 DIERVRELANGRPVVTTSLLKEEGVNDLEEAIQSLFFTGAIESGDLTYVSNTRHISILQE 406
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K A+ S IE+++P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 407 AKRAIEDALSGIEQDVPIDMVQIDLTRCWELLGEIIGDAVHESLIDQLFSQFCLGK 462
>gi|452857695|ref|YP_007499378.1| tRNA modification GTPase and tRNA-U34 5-formylation enzyme
[Bacillus amyloliquefaciens subsp. plantarum UCMB5036]
gi|452081955|emb|CCP23729.1| tRNA modification GTPase and tRNA-U34 5-formylation enzyme
[Bacillus amyloliquefaciens subsp. plantarum UCMB5036]
Length = 459
Score = 327 bits (839), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 191/476 (40%), Positives = 282/476 (59%), Gaps = 20/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T +G GA+ IVRLSGP AV I +++K K K S+ SH +
Sbjct: 1 MDTIAAISTPMG--EGAIAIVRLSGPEAVKIADKMYKDPKGKTLSSA-------ESHTIH 51
Query: 152 YGVVLDRH-GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG + D G +++EV+ + APR++TREDV+E+ CHG V + +VL+ L GA LA+
Sbjct: 52 YGHIADSTTGRIIEEVMVSVLRAPRTFTREDVIEINCHGGIVTVNQVLQLALREGARLAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S+LV +R + +E L
Sbjct: 112 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRDELLETL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + L+++K + +++E L T+ K+L+ GL I+GRPN
Sbjct: 172 AHVEVNIDYPEYDDVEEMTHQLLVEKASGVKKEIEALLRTSEQGKILREGLSTVIIGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 232 VGKSSLLNSLVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ + + ED +L ++ +I+++NK D
Sbjct: 292 ERSRQVLKEADLILLVLNHSEELSEEDVKLFEAVE--------GMDVIVIMNKTDLEAKI 343
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E K V T + +GIQDLE AI + I +G + N R L +
Sbjct: 344 DAERVKELAKGRPVVTTSLLKEEGIQDLEEAIQSLFYTGAIESGDLTYVSNTRHISILHQ 403
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+A+ + IE+++P++ IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 404 AKQAIDDALNGIEQDVPIEMVQIDLTRCWELLGEIIGDAVHESLIDQLFSQFCLGK 459
>gi|163943164|ref|YP_001648048.1| tRNA modification GTPase TrmE [Bacillus weihenstephanensis KBAB4]
gi|229136309|ref|ZP_04265056.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST196]
gi|423369446|ref|ZP_17346877.1| tRNA modification GTPase mnmE [Bacillus cereus VD142]
gi|423451267|ref|ZP_17428120.1| tRNA modification GTPase mnmE [Bacillus cereus BAG5X1-1]
gi|423471649|ref|ZP_17448393.1| tRNA modification GTPase mnmE [Bacillus cereus BAG6O-2]
gi|423595342|ref|ZP_17571372.1| tRNA modification GTPase mnmE [Bacillus cereus VD048]
gi|205829111|sp|A9VTM0.1|MNME_BACWK RecName: Full=tRNA modification GTPase MnmE
gi|163865361|gb|ABY46420.1| tRNA modification GTPase TrmE [Bacillus weihenstephanensis KBAB4]
gi|228647181|gb|EEL03269.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST196]
gi|401077883|gb|EJP86210.1| tRNA modification GTPase mnmE [Bacillus cereus VD142]
gi|401146275|gb|EJQ53791.1| tRNA modification GTPase mnmE [Bacillus cereus BAG5X1-1]
gi|401222018|gb|EJR28620.1| tRNA modification GTPase mnmE [Bacillus cereus VD048]
gi|402431460|gb|EJV63528.1| tRNA modification GTPase mnmE [Bacillus cereus BAG6O-2]
Length = 458
Score = 327 bits (839), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 190/479 (39%), Positives = 284/479 (59%), Gaps = 29/479 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG A++ V R+FK G + +SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAIEKVDRIFK----------GKDLTQVSSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R + +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGHLRQEILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
IE +D+ D++ + N++++K + ++ LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHIEVNIDYPEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGISTAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L +Q I+++NK D
Sbjct: 291 ERSKEMMSQADLVLIVVNYSEALTNEDEDLFRAVQGK--------DFIVIVNKTDLPQEI 342
Query: 449 SNEWNK---VGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
E VGN + T + QGI +LE AI + I + + N R
Sbjct: 343 DMERVTDLAVGNRV---ITTSLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGL 399
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + + +IE +P+D IDL A LG+I+G+ + E ++ +F +FC+GK
Sbjct: 400 LTQAGRTINDAIEAIENGVPIDMVQIDLTRAWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|218900625|ref|YP_002449036.1| tRNA modification GTPase TrmE [Bacillus cereus G9842]
gi|228905428|ref|ZP_04069383.1| tRNA modification GTPase mnmE [Bacillus thuringiensis IBL 4222]
gi|228968636|ref|ZP_04129619.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar sotto
str. T04001]
gi|402562907|ref|YP_006605631.1| tRNA modification GTPase TrmE [Bacillus thuringiensis HD-771]
gi|423362673|ref|ZP_17340173.1| tRNA modification GTPase mnmE [Bacillus cereus VD022]
gi|423565625|ref|ZP_17541900.1| tRNA modification GTPase mnmE [Bacillus cereus MSX-A1]
gi|434378644|ref|YP_006613288.1| tRNA modification GTPase TrmE [Bacillus thuringiensis HD-789]
gi|218540589|gb|ACK92983.1| tRNA modification GTPase TrmE [Bacillus cereus G9842]
gi|228791065|gb|EEM38683.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228854248|gb|EEM98951.1| tRNA modification GTPase mnmE [Bacillus thuringiensis IBL 4222]
gi|401076947|gb|EJP85292.1| tRNA modification GTPase mnmE [Bacillus cereus VD022]
gi|401193307|gb|EJR00313.1| tRNA modification GTPase mnmE [Bacillus cereus MSX-A1]
gi|401791559|gb|AFQ17598.1| tRNA modification GTPase TrmE [Bacillus thuringiensis HD-771]
gi|401877201|gb|AFQ29368.1| tRNA modification GTPase TrmE [Bacillus thuringiensis HD-789]
Length = 458
Score = 327 bits (838), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 187/476 (39%), Positives = 284/476 (59%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ V R+FK G SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKVDRIFK----------GKDLTEVPSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R + +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQEILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++E LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L + +Q I+++NK D +
Sbjct: 291 ERSKEMMSQADLVLVVVNYSEALTNEDEDLFHAVQGK--------DFIVIVNKTDLPQAI 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + N + T + QGI +LE AI + I + + N R L +
Sbjct: 343 DMERVTELAAGNRVITTSLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQ 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 403 AGQTIGDAIEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|415883907|ref|ZP_11545936.1| tRNA modification GTPase TrmE [Bacillus methanolicus MGA3]
gi|387591702|gb|EIJ84019.1| tRNA modification GTPase TrmE [Bacillus methanolicus MGA3]
Length = 461
Score = 327 bits (838), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 190/478 (39%), Positives = 276/478 (57%), Gaps = 24/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG +++I ++F+ V G SH +
Sbjct: 3 FDTIAAISTPMG--EGAIAIVRLSGDQSIEIADKLFRGV-------GGKRIIEAASHTIH 53
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V +EV+ M P+++T+EDVVE+ CHG V + RVL+ L GA LA+
Sbjct: 54 YGHIIDPKTNEVAEEVMVSVMKGPKTFTKEDVVEINCHGGIVSVNRVLQLVLNHGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL ++G S L+ +R + +E+L
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMEGRLSKLIKRLRQEILEIL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
IE +D+ D++ + ++++K + ++++ L+T+ K+L+ GL I+GRPN
Sbjct: 174 AHIEVNIDYPEYDDVEEMTHKMLLEKAQYVREEIQKLLQTSQQGKILREGLSTVIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ LLDTAGIRET+DIVE+IGV
Sbjct: 234 VGKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLLDTAGIRETEDIVERIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ D T ED L ++ +I+++NK D
Sbjct: 294 ERSRQVLKEADLILLVLNYSDELTPEDENLFKTVE--------GMDVIVIVNKTDLPQKI 345
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
E KV DH V T + +G+ +LE AI + I AG + N R L
Sbjct: 346 DME--KVKELAKDHKVVTTSLLEDRGVDELEEAIASMFFEGSIEAGDMTYVSNSRHIALL 403
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++ +E P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 404 HQALNSIEEAIQQVEMGTPIDIVQIDLTKTWELLGEIIGDSVHESLIDQLFSQFCLGK 461
>gi|229014650|ref|ZP_04171764.1| tRNA modification GTPase mnmE [Bacillus mycoides DSM 2048]
gi|423490632|ref|ZP_17467314.1| tRNA modification GTPase mnmE [Bacillus cereus BtB2-4]
gi|423496356|ref|ZP_17473000.1| tRNA modification GTPase mnmE [Bacillus cereus CER057]
gi|423496850|ref|ZP_17473467.1| tRNA modification GTPase mnmE [Bacillus cereus CER074]
gi|423597259|ref|ZP_17573259.1| tRNA modification GTPase mnmE [Bacillus cereus VD078]
gi|423659664|ref|ZP_17634833.1| tRNA modification GTPase mnmE [Bacillus cereus VDM022]
gi|228746661|gb|EEL96550.1| tRNA modification GTPase mnmE [Bacillus mycoides DSM 2048]
gi|401149538|gb|EJQ57009.1| tRNA modification GTPase mnmE [Bacillus cereus CER057]
gi|401163270|gb|EJQ70617.1| tRNA modification GTPase mnmE [Bacillus cereus CER074]
gi|401238791|gb|EJR45223.1| tRNA modification GTPase mnmE [Bacillus cereus VD078]
gi|401304292|gb|EJS09849.1| tRNA modification GTPase mnmE [Bacillus cereus VDM022]
gi|402428977|gb|EJV61068.1| tRNA modification GTPase mnmE [Bacillus cereus BtB2-4]
Length = 458
Score = 327 bits (838), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 190/479 (39%), Positives = 284/479 (59%), Gaps = 29/479 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG A++ V R+FK G + +SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAIEKVDRIFK----------GKDLTQVSSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R + +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGHLRQEILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
IE +D+ D++ + N++++K + ++ LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHIEVNIDYPEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGISTAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L +Q I+++NK D
Sbjct: 291 ERSKEMMSQADLVLIVVNYSEALTNEDEDLFRAVQGK--------DFIVIVNKTDLPQGI 342
Query: 449 SNEWNK---VGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
E VGN + T + QGI +LE AI + I + + N R
Sbjct: 343 DMERVTDLAVGNRV---ITTSLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGL 399
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + + +IE +P+D IDL A LG+I+G+ + E ++ +F +FC+GK
Sbjct: 400 LTQAGRTINDAIEAIENGVPIDMVQIDLTRAWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|387928242|ref|ZP_10130920.1| tRNA modification GTPase TrmE [Bacillus methanolicus PB1]
gi|387587828|gb|EIJ80150.1| tRNA modification GTPase TrmE [Bacillus methanolicus PB1]
Length = 461
Score = 327 bits (838), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 190/478 (39%), Positives = 278/478 (58%), Gaps = 24/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG +++I ++F+ V K+ K + S H +
Sbjct: 3 FDTIAAISTPMG--EGAIAIVRLSGDQSIEIADKLFRGVGGKRIKEAAS-------HTIH 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + V +EV+ M P+++T+EDVVE+ CHG V + RVL+ L GA LA+
Sbjct: 54 YGHIIDPKLNEVAEEVMVSVMKGPKTFTKEDVVEINCHGGLVSVNRVLQLVLSNGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL ++G S L+ +R + +E+L
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMEGRLSKLIKKLRQEILEIL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + ++++K + ++++ L T+ K+L+ GL IVGRPN
Sbjct: 174 AHVEVNIDYPEYDDVEEMTHKMLLEKAQYVREEIQKLLRTSEQGKILREGLSTVIVGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ LLDTAGIRET+DIVE+IGV
Sbjct: 234 VGKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLLDTAGIRETEDIVERIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ D T ED L ++ +I+++NK D
Sbjct: 294 ERSRQVLKEADLILLVLNYSDDLTPEDENLFKAVE--------GMDVIVIVNKTDLPQKI 345
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
E KV DH V T + +G+ +LE AI + I AG + N R L
Sbjct: 346 DME--KVKELAKDHKIVTTSLLEDRGVDELEEAIASMFFEGSIEAGDLTYVSNSRHIALL 403
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++ +E P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 404 HQALNSIEEAIREVEMGTPIDIVQIDLTKTWELLGEIIGDSVHESLIDQLFSQFCLGK 461
>gi|423520679|ref|ZP_17497152.1| tRNA modification GTPase mnmE [Bacillus cereus HuA4-10]
gi|401179776|gb|EJQ86939.1| tRNA modification GTPase mnmE [Bacillus cereus HuA4-10]
Length = 458
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 188/479 (39%), Positives = 284/479 (59%), Gaps = 29/479 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG A++ V R+FK G + +SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAIEKVDRIFK----------GKDLTQVSSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R + +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGHLRQEILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
IE +D+ D++ + N++++K + +++ LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHIEVNIDYPEYDDVEEMTHNILIEKATHVRAEIKKVLETSKQGKILREGISTAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L +Q I+++NK D
Sbjct: 291 ERSKEMMSQADLVLIVVNYSEALTNEDEDLFRAVQGK--------DFIVIVNKTDLPQEI 342
Query: 449 SNEWNK---VGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
E VGN + T + QGI +LE AI + I + + N R
Sbjct: 343 DMERVTDLAVGNRV---ITTSLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGL 399
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 400 LTQAGRTINDAIEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|423557002|ref|ZP_17533305.1| tRNA modification GTPase mnmE [Bacillus cereus MC67]
gi|401193777|gb|EJR00779.1| tRNA modification GTPase mnmE [Bacillus cereus MC67]
Length = 458
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 188/479 (39%), Positives = 285/479 (59%), Gaps = 29/479 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG A++ V R+FK G + +SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAIEKVDRIFK----------GKDLTQVSSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R + +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGHLRQEILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
IE +D+ D++ + N++++K + +++ LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHIEVNIDYPEYDDVEEMTHNILIEKATHVRAEIKKILETSKQGKILREGISTAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L +Q I+++NK D
Sbjct: 291 ERSKEMMSQADLVLIVVNYSEALTNEDEDLFRAVQGK--------DFIVIVNKTDLPQEI 342
Query: 449 SNEWNK---VGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
E VGN + T + QGI +LE AI + I + + N R
Sbjct: 343 DMERVTDLAVGNRV---ITTSLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGL 399
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + + + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 400 LTQAGKTINDAIEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|229181730|ref|ZP_04309053.1| tRNA modification GTPase mnmE [Bacillus cereus 172560W]
gi|228601763|gb|EEK59261.1| tRNA modification GTPase mnmE [Bacillus cereus 172560W]
Length = 458
Score = 327 bits (837), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 187/476 (39%), Positives = 284/476 (59%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ V R+FK G SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKVNRIFK----------GKDLTEVPSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R + +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++E LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L +Q + I+++NK D +
Sbjct: 291 ERSKEMMSQADLVLVVVNYSEALTNEDEDLFRAVQGKE--------FIVIVNKTDLPQAI 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + N + T + QGI +LE AI + I + + N R L +
Sbjct: 343 DMERVTELAAGNRVITTSLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQ 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 403 AGKTIGDAVEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|229153643|ref|ZP_04281819.1| tRNA modification GTPase mnmE [Bacillus cereus m1550]
gi|423589301|ref|ZP_17565387.1| tRNA modification GTPase mnmE [Bacillus cereus VD045]
gi|228629829|gb|EEK86482.1| tRNA modification GTPase mnmE [Bacillus cereus m1550]
gi|401224540|gb|EJR31094.1| tRNA modification GTPase mnmE [Bacillus cereus VD045]
Length = 458
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 188/476 (39%), Positives = 283/476 (59%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ V R+FK G SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKVDRIFK----------GKDLTEVPSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R + +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++E LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L +Q I+++NK D +
Sbjct: 291 ERSKEMMSQADLVLVVVNYSEALTNEDEDLFRAVQGK--------DFIVIVNKTDLPQAI 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + N + T + QGI +LE AI + I + + N R L +
Sbjct: 343 DMERVTELAAGNRVITTSLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQ 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 403 AGKTIGDAVEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|46909000|ref|YP_015389.1| tRNA modification GTPase TrmE [Listeria monocytogenes serotype 4b
str. F2365]
gi|47093270|ref|ZP_00231041.1| tRNA modification GTPase TrmE [Listeria monocytogenes str. 4b
H7858]
gi|290891992|ref|ZP_06554989.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J2-071]
gi|404409193|ref|YP_006691908.1| tRNA modification GTPase [Listeria monocytogenes SLCC2376]
gi|405754033|ref|YP_006677498.1| tRNA modification GTPase [Listeria monocytogenes SLCC2378]
gi|424715642|ref|YP_007016357.1| tRNA modification GTPase MnmE [Listeria monocytogenes serotype 4b
str. LL195]
gi|67461967|sp|Q71VV0.1|MNME_LISMF RecName: Full=tRNA modification GTPase MnmE
gi|46882273|gb|AAT05566.1| tRNA modification GTPase TrmE [Listeria monocytogenes serotype 4b
str. F2365]
gi|47018344|gb|EAL09106.1| tRNA modification GTPase TrmE [Listeria monocytogenes str. 4b
H7858]
gi|290558586|gb|EFD92103.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J2-071]
gi|404223233|emb|CBY74596.1| tRNA modification GTPase [Listeria monocytogenes SLCC2378]
gi|404243342|emb|CBY64742.1| tRNA modification GTPase [Listeria monocytogenes SLCC2376]
gi|424014826|emb|CCO65366.1| tRNA modification GTPase MnmE [Listeria monocytogenes serotype 4b
str. LL195]
Length = 457
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 196/477 (41%), Positives = 278/477 (58%), Gaps = 26/477 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ I+RLSGP A+ I R+F K+S S SH
Sbjct: 3 FDTIAAIST----PPGEGAIAIIRLSGPEAIQIADRIFYA------KNSLS---EAESHT 49
Query: 150 VEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
+ YG + G V++EV+ M APR++TREDVVE+ HG V + RVL+ L GA LA
Sbjct: 50 IHYGHI-KEDGEVIEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLRNGANLA 108
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V LI AK+ A A+ + G S L+ ++R + ++
Sbjct: 109 EPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDA 168
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ + ++++K + VE L+TA+ K+L+ GL AI+GRP
Sbjct: 169 LAQVEVNIDYPEYDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRP 228
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN + E+AIVT+IAGTTRD+IE V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 229 NVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIG 288
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD I++ ++ + T ED L + ++V+NK D
Sbjct: 289 VERSRKALADADFILLVLNQNEELTVEDEALF--------EAAAGHNYVVVLNKTDLETK 340
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ + N V T V +G++ LE AI + I AG + N R L
Sbjct: 341 LDIDRVRELAGENPIVSTSLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLH 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ EAL + + I+ +P+D ID+ A LG+I+G+ + +E+L +F +FC+GK
Sbjct: 401 QALEALNGVTTGIQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457
>gi|423101175|ref|ZP_17088879.1| tRNA modification GTPase TrmE [Listeria innocua ATCC 33091]
gi|370792290|gb|EHN60167.1| tRNA modification GTPase TrmE [Listeria innocua ATCC 33091]
Length = 457
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 196/477 (41%), Positives = 278/477 (58%), Gaps = 26/477 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ I+RLSGP A+ I R+F K+S S SH
Sbjct: 3 FDTIAAIST----PPGEGAIAIIRLSGPEAIQIADRIFYA------KNSLS---EAESHT 49
Query: 150 VEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
+ YG + G V++EV+ M APR++TREDVVE+ HG V + RVL+ L GA LA
Sbjct: 50 IHYGHI-KEDGEVIEEVMVTIMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLRNGANLA 108
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V LI AK+ A A+ + G S L+ ++R + ++
Sbjct: 109 EPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDA 168
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ + ++++K + VE L+TA+ K+L+ GL AI+GRP
Sbjct: 169 LAQVEVNIDYPEYDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRP 228
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN + E+AIVT+IAGTTRD+IE V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 229 NVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIG 288
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD I++ ++ + T ED L + ++V+NK D
Sbjct: 289 VERSRKALADADFILLVLNQNEELTVEDEALF--------EAAAGHNYVVVLNKTDLETK 340
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ + N V T V +G++ LE AI + I AG + N R L
Sbjct: 341 LDIDRVRELAGENPIVSTSLVNDEGLEALEEAIKALFFAGDIDAGDATYVSNVRHIALLH 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ EAL + + I+ +P+D ID+ A LG+I+G+ + +E+L +F +FC+GK
Sbjct: 401 QALEALNGVTTGIQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457
>gi|206970179|ref|ZP_03231132.1| tRNA modification GTPase TrmE [Bacillus cereus AH1134]
gi|228955734|ref|ZP_04117729.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229082698|ref|ZP_04215145.1| tRNA modification GTPase mnmE [Bacillus cereus Rock4-2]
gi|229193735|ref|ZP_04320676.1| tRNA modification GTPase mnmE [Bacillus cereus ATCC 10876]
gi|365162556|ref|ZP_09358684.1| tRNA modification GTPase mnmE [Bacillus sp. 7_6_55CFAA_CT2]
gi|423427570|ref|ZP_17404601.1| tRNA modification GTPase mnmE [Bacillus cereus BAG3X2-2]
gi|423438882|ref|ZP_17415863.1| tRNA modification GTPase mnmE [Bacillus cereus BAG4X12-1]
gi|423506627|ref|ZP_17483216.1| tRNA modification GTPase mnmE [Bacillus cereus HD73]
gi|449092558|ref|YP_007424999.1| tRNA modification GTPase TrmE [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|206734756|gb|EDZ51925.1| tRNA modification GTPase TrmE [Bacillus cereus AH1134]
gi|228589760|gb|EEK47638.1| tRNA modification GTPase mnmE [Bacillus cereus ATCC 10876]
gi|228700610|gb|EEL53149.1| tRNA modification GTPase mnmE [Bacillus cereus Rock4-2]
gi|228803962|gb|EEM50586.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|363618089|gb|EHL69445.1| tRNA modification GTPase mnmE [Bacillus sp. 7_6_55CFAA_CT2]
gi|401108909|gb|EJQ16839.1| tRNA modification GTPase mnmE [Bacillus cereus BAG3X2-2]
gi|401116009|gb|EJQ23855.1| tRNA modification GTPase mnmE [Bacillus cereus BAG4X12-1]
gi|402447292|gb|EJV79148.1| tRNA modification GTPase mnmE [Bacillus cereus HD73]
gi|449026315|gb|AGE81478.1| tRNA modification GTPase TrmE [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 458
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 187/476 (39%), Positives = 283/476 (59%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ V R+FK G SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKVNRIFK----------GKDLTEVPSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R + +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++E LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L +Q I+++NK D +
Sbjct: 291 ERSKEMMSQADLVLVVVNYSEALTNEDEDLFRAVQGK--------DFIVIVNKTDLPQAI 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + N + T + QGI +LE AI + I + + N R L +
Sbjct: 343 DMERVTELAAGNRVITTSLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQ 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 403 AGKTIGDAVEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|403236801|ref|ZP_10915387.1| tRNA modification GTPase TrmE [Bacillus sp. 10403023]
Length = 458
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 194/476 (40%), Positives = 277/476 (58%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG A++I RVFK G SH +
Sbjct: 3 FDTIAAISTPMG--EGAIAIVRLSGDEAIEIANRVFK----------GKNLKEVNSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N VV+EV+ M P+++TREDVVE+ CHG V + RVL+ L GA LA+
Sbjct: 51 YGHIVDPDTNQVVEEVMLTLMRGPKTFTREDVVEVNCHGGLVSVNRVLQLVLTNGARLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A A+ ++G S+L+ +R + +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMSVAIGQMEGRLSTLINRLRQELLETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
IE +D+ D++ + +++++K + ++ LET++ K+L+ GL I+GRPN
Sbjct: 171 AHIEVNIDYPEYDDVEEMTHHVLLEKATRVRDEIIKLLETSSQGKILREGLSTVIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ +AIVT++ GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 231 VGKSSLLNSLVHENKAIVTDVPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ D T ED L I S I+++NK D
Sbjct: 291 ERSREVLKKADLILLVLNYGDELTEEDERLFEAI--------SGMETIVIVNKTDLPQKL 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ E K + V T + +GI LE AI + + A + N R L +
Sbjct: 343 NMEKVKELAKDSPIVTTSLLEEKGIDALEEAISSLFFTGTVEANDLTYVSNSRHIALLAQ 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+++ S +E +LP+D IDL LG+I G+ + E +++ +F +FC+GK
Sbjct: 403 AKKSIEDAISGVESDLPIDMVQIDLTRTWELLGEIVGDAVHESLINQLFSQFCLGK 458
>gi|220933188|ref|YP_002510096.1| tRNA modification GTPase TrmE [Halothermothrix orenii H 168]
gi|219994498|gb|ACL71101.1| tRNA modification GTPase TrmE [Halothermothrix orenii H 168]
Length = 463
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 182/481 (37%), Positives = 291/481 (60%), Gaps = 23/481 (4%)
Query: 88 KAGTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTS 147
K T TIAAI T G +G +R+SG A+D+ R+FK VK K K+ + T+
Sbjct: 2 KGLTDDTIAAISTPFG--TAGIGKIRVSGSGAIDVADRIFKGVKDKSLKNVNT----YTA 55
Query: 148 HVVEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGA 206
H YG V++ G +VDEV+ + M P S+T EDVVE CHG + L++VL L GA
Sbjct: 56 H---YGYVVEPESGKMVDEVIVIVMRGPHSFTGEDVVEFDCHGGMIPLKKVLEVLLNNGA 112
Query: 207 TLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKC 266
LA+PGEF+ RAFLNGR+DL+QAE + ++I++K+ D A+ + G S+ +T ++ +
Sbjct: 113 RLAEPGEFSKRAFLNGRIDLAQAEGIMEVINSKTDKGLDVAINHLTGKLSNKITGIKNEV 172
Query: 267 IELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVG 325
I LL +EA +DF +DE+ + + ++I+ + ++E+ L T++ K+ Q GL+ IVG
Sbjct: 173 IRLLAHLEAAIDFPEDEIEGFEPDELGNRINGIKDEIEDLLATSDQGKIYQEGLKAVIVG 232
Query: 326 RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEK 385
+PNVGKSSLLN+ + RAIVT+I GTTRD+IE + + G+P+ ++DTAGIRET D+VEK
Sbjct: 233 KPNVGKSSLLNSLVQENRAIVTDIPGTTRDIIEEYINIRGIPLRIIDTAGIRETRDMVEK 292
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445
IGVE++ AD+++ + G T ED ++ + ++ PMI+++NK D
Sbjct: 293 IGVEKTRNSLREADLVLFMLDVAQGLTEEDIKIYDMVKDK--------PMIVLVNKTDLD 344
Query: 446 PSASNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQC 503
+ K+ + F +H ++ G+ +L+ AI++ V ++ + R
Sbjct: 345 REIDEK--KIKDHFKEHPLLWISVKEEIGLDNLKEAIIEEVVSEEVNVSDNIFITRVRHK 402
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
+ + + ++ R+K S+ + LP DF TIDL+D ALG+I+GE ++E+++ IF FC+G
Sbjct: 403 DAMKKAVHSINRVKESLNQGLPYDFLTIDLKDCLDALGEITGETVTEDIIDRIFADFCLG 462
Query: 564 K 564
K
Sbjct: 463 K 463
>gi|229164435|ref|ZP_04292363.1| tRNA modification GTPase mnmE [Bacillus cereus R309803]
gi|228619040|gb|EEK75938.1| tRNA modification GTPase mnmE [Bacillus cereus R309803]
Length = 458
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 186/476 (39%), Positives = 284/476 (59%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ V R+FK G SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKVNRIFK----------GKDLTEVPSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R + +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQEILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++ LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATYVRTEIAKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L +Q I+++NK D +
Sbjct: 291 ERSKEMMSQADLVLVVVNYSEALTNEDEDLFRAVQGK--------DFIVIVNKTDLPQAI 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E ++ N + T + QGI +LE AI ++ I + + N R L +
Sbjct: 343 DMERVTELSAGNRVITTSLIEEQGIDELENAIAELFFEGTIDSADMTYVSNARHIGLLTQ 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 403 AGKTIGDAIEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|325912241|ref|ZP_08174638.1| tRNA modification GTPase TrmE [Lactobacillus iners UPII 143-D]
gi|325475900|gb|EGC79069.1| tRNA modification GTPase TrmE [Lactobacillus iners UPII 143-D]
Length = 461
Score = 326 bits (835), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 183/477 (38%), Positives = 291/477 (61%), Gaps = 27/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
+ TIAAI T IG G + I+R+SG A++IV ++F+ G+ + SH +
Sbjct: 8 YDTIAAIATPIG--EGGISIIRVSGENALEIVNKIFR----------GANLNKVASHTIH 55
Query: 152 YGVVLDR-HGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + +VVDEVL MLAP+++TRE+ VE+ CHG + +++L+ L+ GA +A
Sbjct: 56 YGHIIDYANKDVVDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTQKILQLILDNGARMAT 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE++ +I AK+ A A+ ++GG + +R + + +
Sbjct: 116 PGEFTKRAFINGRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTM 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
E +D+ + +M + + DK H + ++++ L TA K+++SGL AIVGRPNV
Sbjct: 176 AHEEVNIDYPEYDMDDVTSKEMYDKAHQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN SK E+AIVT IAGTTRD +E V++ G+ + L+DTAGIR+TDDIVEKIGVE
Sbjct: 236 GKSSLLNYLSKEEKAIVTSIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID-CAPSA 448
RS+ +D++++ +++ + T ED +LL Q K+ I+++NK D A
Sbjct: 296 RSKRAITESDLVLLLINSSEELTEEDQKLLELTQDKKR--------IIILNKADQVAKIT 347
Query: 449 SNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ K+ +S + T +V Q + LE AI + + NQRQ + L
Sbjct: 348 KKDIQKITDS---PIVTISVLKKQNMIGLEEAIKSLFLQGITDSKSEVMVTNQRQNDLLR 404
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K++L+ +I + +PLD IDL++A +LG+I+G+ +E+++ +F KFC+GK
Sbjct: 405 KAKQSLIEAIEAINDNMPLDLVQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461
>gi|347550131|ref|YP_004856459.1| putative GTPase [Listeria ivanovii subsp. ivanovii PAM 55]
gi|346983202|emb|CBW87254.1| Putative GTPase [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 457
Score = 326 bits (835), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 198/481 (41%), Positives = 283/481 (58%), Gaps = 34/481 (7%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ I+RLSGP A+ I R+F K+S S SH
Sbjct: 3 FDTIAAIST----PPGEGAIAIIRLSGPEAIQIADRIFYA------KNSLS---EAASHT 49
Query: 150 VEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
+ YG + +G V++EV+ M AP+++TREDVVE+ HG V + RVL+ L GA LA
Sbjct: 50 IHYGHI-KENGEVIEEVMVTVMRAPKTFTREDVVEINAHGGIVSVNRVLQLLLRNGANLA 108
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V LI AK+ A A+ + G S L+ ++R + ++
Sbjct: 109 EPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDA 168
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ + ++++K + VE L+TA+ K+L+ GL AI+GRP
Sbjct: 169 LAQVEVNIDYPEYDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRP 228
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN + E+AIVT+IAGTTRD+IE V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 229 NVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIG 288
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD I++ ++ + T ED L + ++V+NK D
Sbjct: 289 VERSRKALADADFILLVLNQNEELTVEDEALF--------EAAAGHNYVVVLNKTDLETK 340
Query: 448 ASNEWNKV----GNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQC 503
+ N+V GN N V T V +G++ LE AI + I AG + N R
Sbjct: 341 L--DINRVRELAGN--NPIVSTSLVKDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHI 396
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
L + E+L + + I+ +P+D ID+ A LG+I+G+ + +E+L +F +FC+G
Sbjct: 397 ALLHQALESLNAVTTGIQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLG 456
Query: 564 K 564
K
Sbjct: 457 K 457
>gi|269836202|ref|YP_003318430.1| tRNA modification GTPase TrmE [Sphaerobacter thermophilus DSM
20745]
gi|269785465|gb|ACZ37608.1| tRNA modification GTPase TrmE [Sphaerobacter thermophilus DSM
20745]
Length = 466
Score = 326 bits (835), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 201/482 (41%), Positives = 288/482 (59%), Gaps = 31/482 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT------S 147
TI+AI T +G G +GIVR+SGP A I R+F+ + S RP S
Sbjct: 5 TISAIATPLG--EGGIGIVRISGPDADQIASRIFRRGR----------SLRPVDVAQLES 52
Query: 148 HVVEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGA 206
H + YG V+D R VVDEVL M APRSYTREDVVE+ CHG + +R VLR L AGA
Sbjct: 53 HRLYYGYVVDPRDERVVDEVLLARMAAPRSYTREDVVEISCHGGPLVVREVLRLTLAAGA 112
Query: 207 TLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKC 266
A+PGEFTLRAFLNGR+DL+QAE V ++SA++ + D A+ ++G + R
Sbjct: 113 RQAEPGEFTLRAFLNGRIDLAQAEAVMAVVSARTPDSLDLAVGELRGRMVGRLGPAREAL 172
Query: 267 IELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVG 325
IE L ++A DF +DE+PPL+L + + A +V + A L + G+QIAIVG
Sbjct: 173 IEALAYLDASADFPEDEVPPLDLTGTLARAEAALDEV---VAGARLGLLYREGVQIAIVG 229
Query: 326 RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEK 385
RPNVGKSSLLN ++ERAIVT+IAGTTRDVI S+ + G+P TL+DTAGI +T+DI+E+
Sbjct: 230 RPNVGKSSLLNTLLRAERAIVTDIAGTTRDVIAESINLQGIPATLIDTAGIADTEDIIER 289
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSED---SELLNRIQSNKKSTESSTPMILVINKI 442
+G++RS A + I + T +D +ELL R + +++ ++LV+NK
Sbjct: 290 MGIDRSRRALDTAGLAIFVLDGSMPPTPDDFRVAELLQR----RVASDGHDRLVLVLNKR 345
Query: 443 DCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQ 502
D ++ + V TG+GI LE + + + + + G V RQ
Sbjct: 346 DLPDRHDHDEIRALLPGAPVVEVSTRTGEGIAQLEATLAEAL-IARAAEGAAPALVTLRQ 404
Query: 503 CEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCI 562
+ L R E++ + +++++ E+PLD +D+RDA LA+G+I+GE +SE +L IF +FCI
Sbjct: 405 QQALTRALESIRQARAALDAEIPLDLVAVDVRDALLAVGEITGEQVSETILDEIFARFCI 464
Query: 563 GK 564
GK
Sbjct: 465 GK 466
>gi|30023508|ref|NP_835139.1| tRNA modification GTPase TrmE [Bacillus cereus ATCC 14579]
gi|218234443|ref|YP_002370259.1| tRNA modification GTPase TrmE [Bacillus cereus B4264]
gi|228924229|ref|ZP_04087500.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228961748|ref|ZP_04123351.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229112897|ref|ZP_04242428.1| tRNA modification GTPase mnmE [Bacillus cereus Rock1-15]
gi|229130730|ref|ZP_04259683.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-Cer4]
gi|229148034|ref|ZP_04276373.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST24]
gi|296505912|ref|YP_003667612.1| tRNA modification GTPase TrmE [Bacillus thuringiensis BMB171]
gi|423632799|ref|ZP_17608544.1| tRNA modification GTPase mnmE [Bacillus cereus VD154]
gi|423644641|ref|ZP_17620258.1| tRNA modification GTPase mnmE [Bacillus cereus VD166]
gi|423651322|ref|ZP_17626892.1| tRNA modification GTPase mnmE [Bacillus cereus VD169]
gi|46577419|sp|Q814F6.1|MNME_BACCR RecName: Full=tRNA modification GTPase MnmE
gi|29899069|gb|AAP12340.1| Thiophene and furan oxidation protein ThdF [Bacillus cereus ATCC
14579]
gi|218162400|gb|ACK62392.1| tRNA modification GTPase TrmE [Bacillus cereus B4264]
gi|228635459|gb|EEK91950.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST24]
gi|228652747|gb|EEL08632.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-Cer4]
gi|228670576|gb|EEL25889.1| tRNA modification GTPase mnmE [Bacillus cereus Rock1-15]
gi|228797942|gb|EEM44952.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228835447|gb|EEM80817.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|296326964|gb|ADH09892.1| tRNA modification GTPase TrmE [Bacillus thuringiensis BMB171]
gi|401259445|gb|EJR65621.1| tRNA modification GTPase mnmE [Bacillus cereus VD154]
gi|401270273|gb|EJR76296.1| tRNA modification GTPase mnmE [Bacillus cereus VD166]
gi|401279374|gb|EJR85303.1| tRNA modification GTPase mnmE [Bacillus cereus VD169]
Length = 458
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 187/476 (39%), Positives = 283/476 (59%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ V R+FK G SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKVDRIFK----------GKDLTEVPSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R + +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++E LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L +Q I+++NK D +
Sbjct: 291 ERSKEMMSQADLVLVVVNYSEALTNEDEDLFRAVQGK--------DFIVIVNKTDLPQAI 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + N + T + QGI +LE AI + I + + N R L +
Sbjct: 343 DMERVTELAAGNRVITTSLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQ 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 403 AGKTIGDAVEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|254851886|ref|ZP_05241234.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL R2-503]
gi|254992368|ref|ZP_05274558.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J2-064]
gi|300763431|ref|ZP_07073429.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL N1-017]
gi|404282384|ref|YP_006683282.1| tRNA modification GTPase [Listeria monocytogenes SLCC2755]
gi|404288196|ref|YP_006694782.1| tRNA modification GTPase [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|258605181|gb|EEW17789.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL R2-503]
gi|300515708|gb|EFK42757.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL N1-017]
gi|404229019|emb|CBY50424.1| tRNA modification GTPase [Listeria monocytogenes SLCC2755]
gi|404247125|emb|CBY05350.1| tRNA modification GTPase [Listeria monocytogenes serotype 7 str.
SLCC2482]
Length = 457
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 196/477 (41%), Positives = 277/477 (58%), Gaps = 26/477 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ I+RLSGP A+ I R+F K+S S SH
Sbjct: 3 FDTIAAIST----PPGEGAIAIIRLSGPEAIQIADRIFYA------KNSLS---EAESHT 49
Query: 150 VEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
+ YG + G V++EV+ M APR++TREDVVE+ HG V + RVL+ L GA LA
Sbjct: 50 IHYGHI-KEDGEVIEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLRNGANLA 108
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V LI AK+ A A+ + G S L+ ++R + ++
Sbjct: 109 EPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDA 168
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ + ++++K + VE L+TA+ K+L+ GL AI+GRP
Sbjct: 169 LAQVEVNIDYPEYDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRP 228
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN + E+AIVT+IAGTTRD+IE V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 229 NVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIG 288
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD I++ ++ + T ED L + ++V+NK D
Sbjct: 289 VERSRKALADADFILLVLNQNEELTVEDEALF--------EAAAGHNYVVVLNKTDLETK 340
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ N V T V +G++ LE AI + I AG + N R L
Sbjct: 341 LDINRVRELAGENPIVSTSLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHITLLH 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ EAL + + I+ +P+D ID+ A LG+I+G+ + +E+L +F +FC+GK
Sbjct: 401 QALEALNGVTTGIQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457
>gi|423658396|ref|ZP_17633695.1| tRNA modification GTPase mnmE [Bacillus cereus VD200]
gi|401288126|gb|EJR93888.1| tRNA modification GTPase mnmE [Bacillus cereus VD200]
Length = 458
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 187/476 (39%), Positives = 283/476 (59%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ V R+FK G SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKVDRIFK----------GKDLTEVPSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R + +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++E LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L +Q I+++NK D +
Sbjct: 291 ERSKEMMSQADLVLVVVNYSEALTNEDEDLFRAVQGK--------DFIVIVNKTDLPQAI 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + N + T + QGI +LE AI + I + + N R L +
Sbjct: 343 DMERITELAAGNRVITTSLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQ 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 403 AGKTIGDAVEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|16802002|ref|NP_472270.1| tRNA modification GTPase TrmE [Listeria innocua Clip11262]
gi|21363013|sp|Q926U7.1|MNME_LISIN RecName: Full=tRNA modification GTPase MnmE
gi|16415484|emb|CAC98168.1| lin2943 [Listeria innocua Clip11262]
Length = 457
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 197/479 (41%), Positives = 281/479 (58%), Gaps = 30/479 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ I+RLSGP A+ I R+F K+S S SH
Sbjct: 3 FDTIAAIST----PPGEGAIAIIRLSGPEAIQIADRIFYA------KNSLS---EAESHT 49
Query: 150 VEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
+ YG + G V++EV+ M APR++TREDVVE+ HG V + RVL+ L GA LA
Sbjct: 50 IHYGHI-KEDGEVIEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLRNGANLA 108
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V LI AK+ A A+ + G S L+ ++R + ++
Sbjct: 109 EPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDA 168
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ + ++++K + VE L+TA+ K+L+ GL AI+GRP
Sbjct: 169 LAQVEVNIDYPEYDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRP 228
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN + E+AIVT+IAGTTRD+IE V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 229 NVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIG 288
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD I++ ++ + T ED L + ++V+NK D
Sbjct: 289 VERSRKALADADFILLVLNQNEELTVEDEALF--------EAAAGHNYVVVLNKTDLETK 340
Query: 448 ASNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+ N+V ++ V T V +G++ LE AI + I AG + N R
Sbjct: 341 L--DINRVRELAGENPIVSTSLVNDEGLEALEEAIKALFFAGDIDAGDATYVSNVRHIAL 398
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + EAL + + I+ +P+D ID+ A LG+I+G+ + +E+L +F +FC+GK
Sbjct: 399 LHQALEALNGVTTGIQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457
>gi|217965982|ref|YP_002351660.1| tRNA modification GTPase TrmE [Listeria monocytogenes HCC23]
gi|226225361|ref|YP_002759468.1| GTPase [Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|254824824|ref|ZP_05229825.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J1-194]
gi|254930915|ref|ZP_05264274.1| tRNA modification GTPase TrmE [Listeria monocytogenes HPB2262]
gi|284800302|ref|YP_003412167.1| tRNA modification GTPase TrmE [Listeria monocytogenes 08-5578]
gi|284993487|ref|YP_003415255.1| tRNA modification GTPase TrmE [Listeria monocytogenes 08-5923]
gi|386009591|ref|YP_005927869.1| tRNA modification GTPase [Listeria monocytogenes L99]
gi|386028218|ref|YP_005948994.1| putative tRNA modification GTPase [Listeria monocytogenes M7]
gi|386733513|ref|YP_006207009.1| tRNA modification GTPase TrmE [Listeria monocytogenes 07PF0776]
gi|404414887|ref|YP_006700474.1| tRNA modification GTPase [Listeria monocytogenes SLCC7179]
gi|405751157|ref|YP_006674623.1| tRNA modification GTPase [Listeria monocytogenes ATCC 19117]
gi|406705551|ref|YP_006755905.1| tRNA modification GTPase [Listeria monocytogenes L312]
gi|417318834|ref|ZP_12105395.1| tRNA modification GTPase TrmE [Listeria monocytogenes J1-220]
gi|424824561|ref|ZP_18249574.1| tRNA modification GTPase mnmE [Listeria monocytogenes str. Scott A]
gi|217335252|gb|ACK41046.1| tRNA modification GTPase TrmE [Listeria monocytogenes HCC23]
gi|225877823|emb|CAS06538.1| Putative GTPase [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|284055864|gb|ADB66805.1| tRNA modification GTPase TrmE [Listeria monocytogenes 08-5578]
gi|284058954|gb|ADB69893.1| tRNA modification GTPase TrmE [Listeria monocytogenes 08-5923]
gi|293582461|gb|EFF94493.1| tRNA modification GTPase TrmE [Listeria monocytogenes HPB2262]
gi|293594064|gb|EFG01825.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J1-194]
gi|307572401|emb|CAR85580.1| tRNA modification GTPase [Listeria monocytogenes L99]
gi|328469044|gb|EGF39998.1| tRNA modification GTPase TrmE [Listeria monocytogenes J1-220]
gi|332313241|gb|EGJ26336.1| tRNA modification GTPase mnmE [Listeria monocytogenes str. Scott A]
gi|336024799|gb|AEH93936.1| putative tRNA modification GTPase [Listeria monocytogenes M7]
gi|384392271|gb|AFH81341.1| tRNA modification GTPase TrmE [Listeria monocytogenes 07PF0776]
gi|404220357|emb|CBY71721.1| tRNA modification GTPase [Listeria monocytogenes ATCC 19117]
gi|404240586|emb|CBY61987.1| tRNA modification GTPase [Listeria monocytogenes SLCC7179]
gi|406362581|emb|CBY68854.1| tRNA modification GTPase [Listeria monocytogenes L312]
Length = 457
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 196/477 (41%), Positives = 277/477 (58%), Gaps = 26/477 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ I+RLSGP A+ I R+F K+S S SH
Sbjct: 3 FDTIAAIST----PPGEGAIAIIRLSGPEAIQIADRIFYA------KNSLS---EAESHT 49
Query: 150 VEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
+ YG + G V++EV+ M APR++TREDVVE+ HG V + RVL+ L GA LA
Sbjct: 50 IHYGHI-KEDGEVIEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLRNGANLA 108
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V LI AK+ A A+ + G S L+ ++R + ++
Sbjct: 109 EPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDA 168
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ + ++++K + VE L+TA+ K+L+ GL AI+GRP
Sbjct: 169 LAQVEVNIDYPEYDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRP 228
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN + E+AIVT+IAGTTRD+IE V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 229 NVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIG 288
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD I++ ++ + T ED L + ++V+NK D
Sbjct: 289 VERSRKALADADFILLVLNQNEELTVEDEALF--------EAAAGHNYVVVLNKTDLETK 340
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ N V T V +G++ LE AI + I AG + N R L
Sbjct: 341 LDINRVRELAGENPIVSTSLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLH 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ EAL + + I+ +P+D ID+ A LG+I+G+ + +E+L +F +FC+GK
Sbjct: 401 QALEALNGVTTGIQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457
>gi|407980729|ref|ZP_11161505.1| tRNA modification GTPase TrmE [Bacillus sp. HYC-10]
gi|407412495|gb|EKF34290.1| tRNA modification GTPase TrmE [Bacillus sp. HYC-10]
Length = 459
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 192/478 (40%), Positives = 284/478 (59%), Gaps = 24/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T +G GA+ I+RLSGP AV I R++K K+KK S S H +
Sbjct: 1 MDTIAAISTPMG--EGAIAIIRLSGPDAVQIADRMYKGPKEKKLVSVDS-------HTIH 51
Query: 152 YGVVLDRHG-NVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D V++EV+ + AP+++TREDV+E+ CHG V + +VL+ L GA LA+
Sbjct: 52 YGHIVDSSTEQVIEEVMVSVLRAPKTFTREDVIEINCHGGIVTVNKVLQLALREGARLAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R + +E L
Sbjct: 112 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAITQMEGRLSGLIKRLRGEILETL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + ++++K ++ +++E+ L T+ K+L+ GL I+GRPN
Sbjct: 172 AHVEVNIDYPEYDDVEEMTHRVLVEKATSVKKEIESLLMTSQQGKILREGLSTVIIGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 232 VGKSSLLNSLVQETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ + + ED +L + S +I++INK D P
Sbjct: 292 ERSRQVLKEADLILLVLNYSEELSEEDIKLFEAV--------SGMDVIVIINKTDLEPKL 343
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
E KV D V T + +GI +LE AI + I +G + N R L
Sbjct: 344 DVE--KVKQLAKDRPVVTTSLLQEKGIDELEMAIQSLFFTGSIESGDLTYVSNTRHIALL 401
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+++ IE ++P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 402 QAAKQSIEDALEGIEMDVPIDIVQIDLTRCWEQLGEIIGDAVHESLIDQLFSQFCLGK 459
>gi|405756940|ref|YP_006680404.1| tRNA modification GTPase [Listeria monocytogenes SLCC2540]
gi|404226140|emb|CBY77502.1| tRNA modification GTPase [Listeria monocytogenes SLCC2540]
Length = 457
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 197/479 (41%), Positives = 281/479 (58%), Gaps = 30/479 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ I+RLSGP A+ I R+F K+S S SH
Sbjct: 3 FDTIAAIST----PPGEGAIAIIRLSGPEAIQIADRIFYA------KNSLS---EAESHT 49
Query: 150 VEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
+ YG + G V++EV+ M APR++TREDVVE+ HG V + RVL+ L GA LA
Sbjct: 50 IHYGHI-KEDGEVIEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLRNGANLA 108
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V LI AK+ A A+ + G S L+ ++R + ++
Sbjct: 109 EPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDA 168
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ + ++++K + VE L+TA+ K+L+ GL AI+GRP
Sbjct: 169 LAQVEVNIDYPEYDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRP 228
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN + E+AIVT+IAGTTRD+IE V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 229 NVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLHLIDTAGIRETEDIVEKIG 288
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD I++ ++ + T ED L + ++V+NK D
Sbjct: 289 VERSRKALADADFILLVLNQNEELTVEDEALF--------EAAAGHNYVVVLNKTDLETK 340
Query: 448 ASNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+ N+V ++ V T V +G++ LE AI + I AG + N R
Sbjct: 341 L--DINRVRELAGENPIVSTSLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIAL 398
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + EAL + + I+ +P+D ID+ A LG+I+G+ + +E+L +F +FC+GK
Sbjct: 399 LHQALEALNGVTTGIQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457
>gi|422417401|ref|ZP_16494356.1| tRNA modification GTPase TrmE [Listeria seeligeri FSL N1-067]
gi|313635544|gb|EFS01763.1| tRNA modification GTPase TrmE [Listeria seeligeri FSL N1-067]
Length = 457
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 195/477 (40%), Positives = 278/477 (58%), Gaps = 26/477 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ I+RLSGP A+ I R+F K+S S SH
Sbjct: 3 FDTIAAIST----PPGEGAIAIIRLSGPEAIQIADRIFYA------KNSLS---EAASHT 49
Query: 150 VEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
+ YG + G V++EV+ M AP+++TREDVVE+ HG V + RVL+ L GA LA
Sbjct: 50 IHYGHI-KEDGEVIEEVMVTVMRAPKTFTREDVVEINAHGGIVSVNRVLQLLLRNGANLA 108
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V LI AK+ A A+ + G S L+ ++R + ++
Sbjct: 109 EPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDA 168
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ + ++++K + VE L+TA+ K+L+ GL AI+GRP
Sbjct: 169 LAQVEVNIDYPEYDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRP 228
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN + E+AIVT+IAGTTRD+IE V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 229 NVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIG 288
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD I++ ++ + T ED L S ++V+NK D
Sbjct: 289 VERSRKALKDADFILLVLNQNEELTIEDEALF--------EAASGHNYVVVLNKTDLEQK 340
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
E + N V T + +G++ LE AI + I AG + N R L
Sbjct: 341 LDIERVRELAGANPVVETSLIKDEGLEALEDAIKTLFFAGDIDAGDATYVSNVRHIALLH 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + + I+ +P+D ID+ A LG+I+G+ + +E+L +F +FC+GK
Sbjct: 401 QALESLNAVTTGIQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457
>gi|386716450|ref|YP_006182774.1| tRNA modification GTPase TrmE [Halobacillus halophilus DSM 2266]
gi|384076007|emb|CCG47504.1| tRNA modification GTPase TrmE [Halobacillus halophilus DSM 2266]
Length = 458
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 188/475 (39%), Positives = 275/475 (57%), Gaps = 23/475 (4%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
TI AI T +G GA+ IVRLSGP AV I G +F+ G SH + Y
Sbjct: 4 DTITAISTPMG--EGAIAIVRLSGPQAVSIAGDLFR----------GKDLNEVDSHTMHY 51
Query: 153 GVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
G ++D G +EV+ M AP+++TRED+VE+ CHG V + RVL L +G LA+P
Sbjct: 52 GKIIDPDTGETAEEVMVSVMRAPKTFTREDIVEINCHGGLVSVNRVLEIVLASGGRLAEP 111
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DLSQAE V LI AK+ A + AL + G S+L+ +R K +E L
Sbjct: 112 GEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVALKQMDGRLSNLIQQLRQKLLETLA 171
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+E +D+ D++ ++ ++ K + +V N L+TA K+L+ GL AI+GRPNV
Sbjct: 172 HVEVNIDYPEYDDVEEMSHEMMEQKTKEVHAEVSNLLQTARQGKILREGLGTAIIGRPNV 231
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSL+N +AIVTE+ GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGVE
Sbjct: 232 GKSSLMNTLVHENKAIVTEVPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDIVERIGVE 291
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS V AD+I++ ++ D +D +L + ++ +I+++NK+D P
Sbjct: 292 RSRQVLEEADLILLVLNYGDELNDDDKQLFDALR--------DMNIIVIVNKMDLEPKLD 343
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+ K N + T + +G+ LE AI ++ AG + N R + L +
Sbjct: 344 IDQVKEFAGDNPVISTSLIHEKGVDQLENAIADTFFEGELDAGDMTYVSNVRHVQLLKQA 403
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K++L ++ +E +PLD ID+ LG+I G+ + E ++ +F +FC+GK
Sbjct: 404 KQSLEDAQNGMEMGVPLDVVQIDVTRTWEILGEIIGDTVHESLIDQLFSQFCLGK 458
>gi|229051153|ref|ZP_04194697.1| tRNA modification GTPase mnmE [Bacillus cereus AH676]
gi|228722216|gb|EEL73617.1| tRNA modification GTPase mnmE [Bacillus cereus AH676]
Length = 458
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 187/476 (39%), Positives = 283/476 (59%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ V R+FK G SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKVDRIFK----------GKDLTEVPSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R + +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVIDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++E LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L +Q I+++NK D +
Sbjct: 291 ERSKEMMSQADLVLVVVNYSEALTNEDEDLFRAVQGK--------DFIVIVNKTDLPQAI 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + N + T + QGI +LE AI + I + + N R L +
Sbjct: 343 DMERVTELAAGNRVITTSLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQ 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 403 AGKTIGDAVEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|289436062|ref|YP_003465934.1| tRNA modification GTPase TrmE [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289172306|emb|CBH28852.1| tRNA modification GTPase TrmE [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 457
Score = 325 bits (833), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 195/477 (40%), Positives = 278/477 (58%), Gaps = 26/477 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ I+RLSGP A+ I R+F K+S S SH
Sbjct: 3 FDTIAAIST----PPGEGAIAIIRLSGPEAIQIADRIFYA------KNSLS---EAASHT 49
Query: 150 VEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
+ YG + G V++EV+ M AP+++TREDVVE+ HG V + RVL+ L GA LA
Sbjct: 50 IHYGHI-KEDGEVIEEVMVTVMRAPKTFTREDVVEINAHGGIVSVNRVLQLLLRNGANLA 108
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V LI AK+ A A+ + G S L+ ++R + ++
Sbjct: 109 EPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDA 168
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ + ++++K + VE L+TA+ K+L+ GL AI+GRP
Sbjct: 169 LAQVEVNIDYPEYDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRP 228
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN + E+AIVT+IAGTTRD+IE V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 229 NVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIG 288
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD I++ ++ + T ED L S ++V+NK D
Sbjct: 289 VERSRKALKDADFILLVLNQNEELTIEDEALF--------EAASGHNYVVVLNKTDLEQR 340
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
E + N V T + +G++ LE AI + I AG + N R L
Sbjct: 341 LDIERVRELAGANPVVETSLIKDEGLEALEDAIKTLFFAGDIDAGDATYVSNVRHIALLH 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + + I+ +P+D ID+ A LG+I+G+ + +E+L +F +FC+GK
Sbjct: 401 QALESLNAVTTGIQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457
>gi|16804848|ref|NP_466333.1| tRNA modification GTPase TrmE [Listeria monocytogenes EGD-e]
gi|47095618|ref|ZP_00233226.1| tRNA modification GTPase TrmE [Listeria monocytogenes str. 1/2a
F6854]
gi|254913066|ref|ZP_05263078.1| tRNA modification GTPase trmE [Listeria monocytogenes J2818]
gi|254937447|ref|ZP_05269144.1| tRNA modification GTPase TrmE [Listeria monocytogenes F6900]
gi|255028100|ref|ZP_05300051.1| tRNA modification GTPase TrmE [Listeria monocytogenes LO28]
gi|386048544|ref|YP_005966876.1| tRNA modification GTPase TrmE [Listeria monocytogenes J0161]
gi|386051795|ref|YP_005969786.1| tRNA modification GTPase mnmE [Listeria monocytogenes FSL R2-561]
gi|404285321|ref|YP_006686218.1| tRNA modification GTPase [Listeria monocytogenes SLCC2372]
gi|405759877|ref|YP_006689153.1| tRNA modification GTPase [Listeria monocytogenes SLCC2479]
gi|21363006|sp|Q8Y3M4.1|MNME_LISMO RecName: Full=tRNA modification GTPase MnmE
gi|16412311|emb|CAD01024.1| lmo2811 [Listeria monocytogenes EGD-e]
gi|47016048|gb|EAL06973.1| tRNA modification GTPase TrmE [Listeria monocytogenes str. 1/2a
F6854]
gi|258610049|gb|EEW22657.1| tRNA modification GTPase TrmE [Listeria monocytogenes F6900]
gi|293591067|gb|EFF99401.1| tRNA modification GTPase trmE [Listeria monocytogenes J2818]
gi|345535535|gb|AEO04976.1| tRNA modification GTPase TrmE [Listeria monocytogenes J0161]
gi|346425641|gb|AEO27166.1| tRNA modification GTPase mnmE [Listeria monocytogenes FSL R2-561]
gi|404234823|emb|CBY56226.1| tRNA modification GTPase [Listeria monocytogenes SLCC2372]
gi|404237759|emb|CBY59161.1| tRNA modification GTPase [Listeria monocytogenes SLCC2479]
Length = 457
Score = 325 bits (833), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 196/477 (41%), Positives = 277/477 (58%), Gaps = 26/477 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ I+RLSGP A+ I R+F K+S S SH
Sbjct: 3 FDTIAAIST----PPGEGAIAIIRLSGPEAIQIADRIFYA------KNSLS---EAESHT 49
Query: 150 VEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
+ YG + G V++EV+ M APR++TREDVVE+ HG V + RVL+ L GA LA
Sbjct: 50 IHYGHI-KEDGEVIEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLRNGANLA 108
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V LI AK+ A A+ + G S L+ ++R + ++
Sbjct: 109 EPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDA 168
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ + ++++K + VE L TA+ K+L+ GL AI+GRP
Sbjct: 169 LAQVEVNIDYPEYDDVEEMTQRMLLEKTELVRASVEQLLRTASQGKILREGLATAIIGRP 228
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN + E+AIVT+IAGTTRD+IE V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 229 NVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIG 288
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD I++ ++ + T ED L + ++V+NK D
Sbjct: 289 VERSRKALADADFILLVLNQNEELTVEDEALF--------EAAAGHNYVVVLNKTDLETK 340
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ + N V T V +G++ LE AI + I AG + N R L
Sbjct: 341 LDIDRVRELAGENPIVSTSLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLH 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ EAL + + I+ +P+D ID+ A LG+I+G+ + +E+L +F +FC+GK
Sbjct: 401 QALEALNGVTTGIQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457
>gi|254827379|ref|ZP_05232066.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL N3-165]
gi|258599757|gb|EEW13082.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL N3-165]
Length = 457
Score = 325 bits (833), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 196/477 (41%), Positives = 277/477 (58%), Gaps = 26/477 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ I+RLSGP A+ I R+F K+S S SH
Sbjct: 3 FDTIAAIST----PPGEGAIAIIRLSGPEAIQIADRIFYA------KNSLS---EAESHT 49
Query: 150 VEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
+ YG + G V++EV+ M APR++TREDVVE+ HG V + RVL+ L GA LA
Sbjct: 50 IHYGHI-KEDGEVIEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLRNGANLA 108
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V LI AK+ A A+ + G S L+ ++R + ++
Sbjct: 109 EPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDA 168
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ + ++++K + VE L+TA+ K+L+ GL AI+GRP
Sbjct: 169 LAQVEVNIDYPEYDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRP 228
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN + E+AIVT+IAGTTRD+IE V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 229 NVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIG 288
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD I++ ++ + T ED L + ++V+NK D
Sbjct: 289 VERSRKALADADFILLVLNQNEELTVEDEALF--------EAAAGHNYVVVLNKTDLETK 340
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ N V T V +G++ LE AI + I AG + N R L
Sbjct: 341 LDIDRVHELAGENPIVSTSLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLH 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ EAL + + I+ +P+D ID+ A LG+I+G+ + +E+L +F +FC+GK
Sbjct: 401 QALEALNGVTTGIQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457
>gi|423633668|ref|ZP_17609321.1| tRNA modification GTPase mnmE [Bacillus cereus VD156]
gi|401282735|gb|EJR88633.1| tRNA modification GTPase mnmE [Bacillus cereus VD156]
Length = 458
Score = 325 bits (833), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 187/476 (39%), Positives = 282/476 (59%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ V R+FK G SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKVDRIFK----------GKDLTEVPSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A A+ ++G S L+ +R + +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMSVAINQMEGRLSKLIGLLRQEILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++E LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L +Q I+++NK D +
Sbjct: 291 ERSKEMMSQADLVLVVVNYSEALTNEDEDLFRAVQGK--------DFIVIVNKTDLPQAI 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + N + T + QGI +LE AI + I + + N R L +
Sbjct: 343 DMERVTELAAGNRVITTSLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQ 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 403 AGKTIGDAVEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|347526360|ref|YP_004833108.1| tRNA modification GTPase TrmE [Lactobacillus ruminis ATCC 27782]
gi|345285319|gb|AEN79172.1| tRNA modification GTPase TrmE [Lactobacillus ruminis ATCC 27782]
Length = 462
Score = 325 bits (833), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 195/480 (40%), Positives = 286/480 (59%), Gaps = 31/480 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVR+SG AV I +VF SG + SH
Sbjct: 7 FDTIAAIST----PPGEGAISIVRMSGEEAVSIAQKVF----------SGKDLTQAKSHT 52
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D + +DEV+ MLAP+++TREDVVE+ CHG V R+L+ L GA L
Sbjct: 53 INYGHIVDPKTHEEIDEVMVSLMLAPKTFTREDVVEINCHGGIVATNRILQLLLVNGARL 112
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFL+GR+DL+QAE+V LI AK+ + AL + G S L+ S+R ++
Sbjct: 113 AEPGEFTKRAFLHGRIDLTQAESVMDLIRAKTDRSMKIALNQLDGNLSHLIDSLRKDILD 172
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L ++E +D+ D++ + L+ +K + Q +E L+TA+ K+++ GL A+VGR
Sbjct: 173 VLAQVEVNIDYPEYDDVEEMTTKLLKEKAIEIKQRIEQLLKTASQGKIMREGLATALVGR 232
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN ++AIVT++AGTTRDVIE V V GVP+ L+DTAGIRETDD VEKI
Sbjct: 233 PNVGKSSLLNHLLHEDKAIVTDVAGTTRDVIEEYVNVSGVPLKLIDTAGIRETDDKVEKI 292
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS+ +D++++ ++A + T ED EL+ R+ ++KK I+++NK D
Sbjct: 293 GVERSKKAIEQSDLVLLVLNAAESLTKEDFELI-RLTNDKKR-------IIILNKTDLEE 344
Query: 447 SAS-NEWNKVGNSFNDHVF-TCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCE 504
E K+ S N V+ T + +G++ LE AI K+ + N R
Sbjct: 345 KLDRKELAKI--SGNAPVYATSILKNEGVEALEEAISKLFFNGIENSQSTVMVTNARHIA 402
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + + +L + I +P+D ID+ +A LG+I+GE +E+L +F +FC+GK
Sbjct: 403 LLKKAQNSLDSVLEGISSGMPVDLVQIDMTEAWNLLGEITGESYEDELLDQLFSQFCLGK 462
>gi|331268194|ref|YP_004394686.1| tRNA modification GTPase TrmE [Clostridium botulinum BKT015925]
gi|329124744|gb|AEB74689.1| tRNA modification GTPase TrmE [Clostridium botulinum BKT015925]
Length = 462
Score = 325 bits (832), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 187/476 (39%), Positives = 285/476 (59%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G V I+R+SG A+ IV +F +K + S R
Sbjct: 7 FDTIAAIATNLG--ESGVSIIRVSGERALSIVSDIFIGKNDRKLDDIRTYSMR------- 57
Query: 152 YGVVLDR-HGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D+ G +DEV+ M PRS+T EDVVE+ CHG V +R+L ++AGA LA
Sbjct: 58 YGFIIDKVSGEKLDEVIVSYMKGPRSFTAEDVVEINCHGGVVVTKRILEEVMKAGARLAS 117
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI+AK+ +A +AL +G S ++ +R K +E++
Sbjct: 118 PGEFTKRAFLNGRIDLSQAEAVIDLINAKTELSAKSALEQSEGKLSKEISHLRDKLLEII 177
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IEA +D+ +D++ + + + + +++ L +AN K+L+ GL IVG+PNV
Sbjct: 178 ANIEATVDYPEDDLEEVTSERGKEAVDKIVSEIDKLLNSANEGKILREGLNTVIVGKPNV 237
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSS+LNA RAIVT+I GTTRDVIE +++ G+P+ ++DTAGIRETDDIVEKIGVE
Sbjct: 238 GKSSILNALLMETRAIVTDIPGTTRDVIEEYMSIEGIPIKIVDTAGIRETDDIVEKIGVE 297
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S L +D+ ++ + + +ED E+++ I+ K I+++NKID
Sbjct: 298 KSREKILNSDLTVLVLDSSRQLDAEDKEIIDFIKDKK--------YIVLLNKIDLDTKLD 349
Query: 450 NE-WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E NK+ + + + A TG+G+ + I ++ ++ + N R E L+R
Sbjct: 350 KESLNKLNSDY--IIDISARTGKGLDRFKEVIKELFFSGEVTSKD-VMITNTRHKEALIR 406
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K +L+ K ++E +D +IDLRDA LG+I+G+ + E+++ IF KFC+GK
Sbjct: 407 AKSSLIAGKGALENTFAIDLASIDLRDAWKNLGEINGDTVEEDIIDKIFSKFCLGK 462
>gi|255026481|ref|ZP_05298467.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J2-003]
Length = 457
Score = 325 bits (832), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 196/477 (41%), Positives = 276/477 (57%), Gaps = 26/477 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ I+RLSGP A+ I R+F K+S S SH
Sbjct: 3 FDTIAAIST----PPGEGAIAIIRLSGPEAIQIADRIFYA------KNSLS---EAESHT 49
Query: 150 VEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
+ YG + G V++EV+ M APR++TREDVVE+ HG V + RVL+ L GA LA
Sbjct: 50 IHYGHI-KEDGEVIEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLRNGANLA 108
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V LI AK+ A A+ + G S L+ ++R + ++
Sbjct: 109 EPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDA 168
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ + ++++K + VE L TA+ K+L+ GL AI+GRP
Sbjct: 169 LAQVEVNIDYPEYDDVEEMTQRMLLEKTELVRASVEQLLRTASQGKILREGLATAIIGRP 228
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN + E+AIVT+IAGTTRD+IE V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 229 NVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIG 288
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD I++ ++ + T ED L + ++V+NK D
Sbjct: 289 VERSRKALADADFILLVLNQSEELTVEDEALF--------EAAAGHNYVVVLNKTDLETK 340
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ N V T V +G++ LE AI + I AG + N R L
Sbjct: 341 LDINRVRELAGENPIVSTSLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLH 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ EAL + + I+ +P+D ID+ A LG+I+G+ + +E+L +F +FC+GK
Sbjct: 401 QALEALNGVTTGIQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457
>gi|229099911|ref|ZP_04230834.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-29]
gi|229118974|ref|ZP_04248319.1| tRNA modification GTPase mnmE [Bacillus cereus Rock1-3]
gi|407707952|ref|YP_006831537.1| glycerate kinase [Bacillus thuringiensis MC28]
gi|423376724|ref|ZP_17354008.1| tRNA modification GTPase mnmE [Bacillus cereus BAG1O-2]
gi|423439819|ref|ZP_17416725.1| tRNA modification GTPase mnmE [Bacillus cereus BAG4X2-1]
gi|423450020|ref|ZP_17426899.1| tRNA modification GTPase mnmE [Bacillus cereus BAG5O-1]
gi|423462890|ref|ZP_17439658.1| tRNA modification GTPase mnmE [Bacillus cereus BAG6O-1]
gi|423532247|ref|ZP_17508665.1| tRNA modification GTPase mnmE [Bacillus cereus HuB2-9]
gi|423542483|ref|ZP_17518873.1| tRNA modification GTPase mnmE [Bacillus cereus HuB4-10]
gi|423548714|ref|ZP_17525072.1| tRNA modification GTPase mnmE [Bacillus cereus HuB5-5]
gi|423618816|ref|ZP_17594649.1| tRNA modification GTPase mnmE [Bacillus cereus VD115]
gi|423621479|ref|ZP_17597257.1| tRNA modification GTPase mnmE [Bacillus cereus VD148]
gi|228664499|gb|EEL19995.1| tRNA modification GTPase mnmE [Bacillus cereus Rock1-3]
gi|228683526|gb|EEL37481.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-29]
gi|401127318|gb|EJQ35045.1| tRNA modification GTPase mnmE [Bacillus cereus BAG5O-1]
gi|401168730|gb|EJQ75989.1| tRNA modification GTPase mnmE [Bacillus cereus HuB4-10]
gi|401174831|gb|EJQ82038.1| tRNA modification GTPase mnmE [Bacillus cereus HuB5-5]
gi|401252292|gb|EJR58553.1| tRNA modification GTPase mnmE [Bacillus cereus VD115]
gi|401263234|gb|EJR69363.1| tRNA modification GTPase mnmE [Bacillus cereus VD148]
gi|401640969|gb|EJS58694.1| tRNA modification GTPase mnmE [Bacillus cereus BAG1O-2]
gi|402421451|gb|EJV53704.1| tRNA modification GTPase mnmE [Bacillus cereus BAG4X2-1]
gi|402422699|gb|EJV54927.1| tRNA modification GTPase mnmE [Bacillus cereus BAG6O-1]
gi|402465108|gb|EJV96792.1| tRNA modification GTPase mnmE [Bacillus cereus HuB2-9]
gi|407385637|gb|AFU16138.1| tRNA modification GTPase mnmE [Bacillus thuringiensis MC28]
Length = 458
Score = 325 bits (832), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 186/476 (39%), Positives = 282/476 (59%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ V R+FK G SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKVNRIFK----------GKDLTEVPSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++ LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L +Q I+++NK D
Sbjct: 291 ERSKEMMSQADLVLIVVNYSEALTNEDEDLFRAVQGK--------DFIVIVNKTDLPQGI 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + N + T + QGI +LE AI ++ I + + N R L +
Sbjct: 343 DMERVAELAAGNRVITTSLIEEQGIDELEQAIAELFFEGTIDSADMTYVSNARHIGLLTQ 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++ + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 403 AEKTIGDAIEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|423583654|ref|ZP_17559765.1| tRNA modification GTPase mnmE [Bacillus cereus VD014]
gi|401209714|gb|EJR16473.1| tRNA modification GTPase mnmE [Bacillus cereus VD014]
Length = 458
Score = 325 bits (832), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 187/476 (39%), Positives = 282/476 (59%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ V R+FK G SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKVDRIFK----------GKDLTEVPSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R + +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++E LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L +Q I+++NK D
Sbjct: 291 ERSKEMMSQADLVLVVVNYSEALTNEDEDLFRAVQGK--------DFIVIVNKTDLPQVI 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + N + T + QGI +LE AI + I + + N R L +
Sbjct: 343 DMERVTELAAGNRVITTSLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQ 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 403 AGKTIGDAVEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|148240676|ref|YP_001226063.1| tRNA modification GTPase TrmE [Synechococcus sp. WH 7803]
gi|205829179|sp|A5GPA1.1|MNME_SYNPW RecName: Full=tRNA modification GTPase MnmE
gi|147849215|emb|CAK24766.1| tRNA modification GTPase [Synechococcus sp. WH 7803]
Length = 460
Score = 325 bits (832), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 188/461 (40%), Positives = 283/461 (61%), Gaps = 26/461 (5%)
Query: 107 GAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVL-DRHGNVVDE 165
G + ++RLSGP A + + + G SW SH V YG VL G +DE
Sbjct: 23 GGIAVIRLSGPQA--------QAAVQSVTRIPGQQSW--ESHRVLYGHVLAGESGERIDE 72
Query: 166 VLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEA-GATLAQPGEFTLRAFLNGRL 224
VL + MLAPRS+T EDVVE+ CHG + ++RVL L+ G A PGEF+ RA LNGRL
Sbjct: 73 VLVLLMLAPRSFTGEDVVEIHCHGGVIAVQRVLARVLDQPGVRRALPGEFSQRAVLNGRL 132
Query: 225 DLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMP 284
DL++AE + L++A+S AA+ A+AG+ GG +T++R + ++ L+E+EAR+DF++++P
Sbjct: 133 DLTRAEAISDLVAARSQRAAELAMAGVDGGIQKRITALRDRLLDQLSELEARVDFEEDLP 192
Query: 285 PLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERA 344
L+ +++++ + ++ ++ L+ GL++A+VGRPNVGKSSLLN S+ ERA
Sbjct: 193 ALDGAALLEELQRVRGALQQLVKDGQVGAALRQGLRVALVGRPNVGKSSLLNRLSRRERA 252
Query: 345 IVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMT 404
IVT++ GTTRD++E+ + + GVP+TLLDTAGIR T D VE++G+ RS AD++++
Sbjct: 253 IVTDLPGTTRDLLESEIVLEGVPITLLDTAGIRATSDAVERLGIARSHDALASADLVLLL 312
Query: 405 VSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFN-DHV 463
GWT +D L RI ++ P +LV NK+D A S + + G S + +
Sbjct: 313 FDLSVGWTPDDEALRQRI-------PAAVPHLLVGNKVDVAVSDA----RAGTSGSAADI 361
Query: 464 FTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEE 523
A TG G +L A+++ G + G ++NQRQ + + +AL R +
Sbjct: 362 RLSASTGAGEAELVQAVLERCG--ALADGSLLLSLNQRQGDLAQQAADALARSAQVAADG 419
Query: 524 LPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
LP DFWTIDLR A +LG+I+GE+++E VL IF +FCIGK
Sbjct: 420 LPWDFWTIDLRQAIHSLGEITGEELTESVLDRIFSRFCIGK 460
>gi|300118814|ref|ZP_07056534.1| tRNA modification GTPase TrmE [Bacillus cereus SJ1]
gi|298723782|gb|EFI64504.1| tRNA modification GTPase TrmE [Bacillus cereus SJ1]
Length = 458
Score = 325 bits (832), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 189/476 (39%), Positives = 282/476 (59%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ V R+FK G SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKVNRIFK----------GKDLTEVPSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+A M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMASIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++ LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED EL +Q I+++NK D S
Sbjct: 291 ERSKEMMSQADLVLVVVNYSETLTNEDEELFRAVQGK--------DFIVIVNKTDLPQSI 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + N + T + QGI +LE AI + I + + N R L +
Sbjct: 343 DMERVIELAAGNRVITTSLIEEQGIDELEKAIADLFFEGTIDSTDVTYVSNARHIGLLTQ 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 403 AGKTIGDAIEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|335997933|ref|ZP_08563846.1| tRNA modification GTPase TrmE [Lactobacillus ruminis SPM0211]
gi|335349815|gb|EGM51314.1| tRNA modification GTPase TrmE [Lactobacillus ruminis SPM0211]
Length = 462
Score = 324 bits (831), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 195/480 (40%), Positives = 286/480 (59%), Gaps = 31/480 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVR+SG AV I +VF SG + SH
Sbjct: 7 FDTIAAIST----PPGEGAISIVRMSGEEAVSIAQKVF----------SGKDLTQAKSHT 52
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D + +DEV+ MLAP+++TREDVVE+ CHG V R+L+ L GA L
Sbjct: 53 INYGHIVDPKTHEEIDEVMVSLMLAPKTFTREDVVEINCHGGIVATNRILQLLLVNGARL 112
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFL+GR+DL+QAE+V LI AK+ + AL + G S L+ S+R ++
Sbjct: 113 AEPGEFTKRAFLHGRIDLTQAESVMDLIRAKTDRSMKIALNQLDGNLSHLIDSLRKDILD 172
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L ++E +D+ D++ + L+ +K + Q +E L+TA+ K+++ GL A+VGR
Sbjct: 173 VLAQVEVNIDYPEYDDVEEMTTKLLKEKAIEIKQRIEQLLKTASQGKIMREGLATALVGR 232
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN ++AIVT++AGTTRDVIE V V GVP+ L+DTAGIRETDD VEKI
Sbjct: 233 PNVGKSSLLNHLLHEDKAIVTDVAGTTRDVIEEYVNVSGVPLKLIDTAGIRETDDKVEKI 292
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS+ +D++++ ++A + T ED EL+ R+ ++KK I+++NK D
Sbjct: 293 GVERSKKAIEQSDLVLLVLNAAESLTKEDLELI-RLTNDKKR-------IIILNKTDLEE 344
Query: 447 SAS-NEWNKVGNSFNDHVF-TCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCE 504
E K+ S N V+ T + +G++ LE AI K+ + N R
Sbjct: 345 KLDRKELAKI--SGNAPVYATSILKNEGVEALEEAISKLFFNGIENSQSTVMVTNARHVA 402
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + + +L + I +P+D ID+ +A LG+I+GE +E+L +F +FC+GK
Sbjct: 403 LLEKAQNSLDSVLEGISSGMPVDLVQIDMTEAWNLLGEITGESYEDELLDQLFSQFCLGK 462
>gi|386045116|ref|YP_005963921.1| tRNA modification GTPase TrmE [Listeria monocytogenes 10403S]
gi|404412060|ref|YP_006697648.1| tRNA modification GTPase [Listeria monocytogenes SLCC5850]
gi|345538350|gb|AEO07790.1| tRNA modification GTPase TrmE [Listeria monocytogenes 10403S]
gi|404231886|emb|CBY53290.1| tRNA modification GTPase [Listeria monocytogenes SLCC5850]
Length = 457
Score = 324 bits (831), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 197/479 (41%), Positives = 280/479 (58%), Gaps = 30/479 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ I+RLSGP A+ I R+F K+S S SH
Sbjct: 3 FDTIAAIST----PPGEGAIAIIRLSGPEAIQIADRIFYA------KNSLS---EAESHT 49
Query: 150 VEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
+ YG + G V++EV+ M APR++TREDVVE+ HG V + RVL+ L GA LA
Sbjct: 50 IHYGHI-KEDGEVIEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLRNGANLA 108
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V LI AK+ A A+ + G S L+ ++R + ++
Sbjct: 109 EPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDA 168
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ + ++++K + VE L TA+ K+L+ GL AI+GRP
Sbjct: 169 LAQVEVNIDYPEYDDVEEMTQRMLLEKTELVRASVEQLLRTASQGKILREGLATAIIGRP 228
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN + E+AIVT+IAGTTRD+IE V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 229 NVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIG 288
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD I++ ++ + T ED L + ++V+NK D
Sbjct: 289 VERSRKALADADFILLVLNQNEELTVEDEALF--------EAAAGHNYVVVLNKTDLETK 340
Query: 448 ASNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+ N+V ++ V T V +G++ LE AI + I AG + N R
Sbjct: 341 L--DINRVRELAGENPIVSTSLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIAL 398
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + EAL + + I+ +P+D ID+ A LG+I+G+ + +E+L +F +FC+GK
Sbjct: 399 LHQALEALNGVTTGIQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457
>gi|152977683|ref|YP_001377200.1| tRNA modification GTPase TrmE [Bacillus cytotoxicus NVH 391-98]
gi|189036194|sp|A7GVP7.1|MNME_BACCN RecName: Full=tRNA modification GTPase MnmE
gi|152026435|gb|ABS24205.1| tRNA modification GTPase TrmE [Bacillus cytotoxicus NVH 391-98]
Length = 458
Score = 324 bits (831), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 185/476 (38%), Positives = 283/476 (59%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG A++ V R+FK G +SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGEDAIEKVNRIFK----------GKDLTAVSSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M AP+++TRED+VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPKTFTREDIVEVNCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R + +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQEILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + ++++K + ++E LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHRILIEKATHVQNEIEKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDIVEQIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED EL +Q I+++NK D
Sbjct: 291 ERSKEMMSQADLVLIVVNYSEPLTNEDEELFRAVQGK--------DFIVIVNKTDLPQKI 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E S + T + +G+ +LE AI + I + + N R L +
Sbjct: 343 EMERVTELASEKRVITTSLIEEKGVDELEKAIADLFFEGTIESADMTYVSNARHIGLLTQ 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++ + ++IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 403 ARKTIGDAIAAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|323341065|ref|ZP_08081313.1| tRNA modification GTPase TrmE [Lactobacillus ruminis ATCC 25644]
gi|417973407|ref|ZP_12614261.1| tRNA modification GTPase TrmE [Lactobacillus ruminis ATCC 25644]
gi|323091486|gb|EFZ34110.1| tRNA modification GTPase TrmE [Lactobacillus ruminis ATCC 25644]
gi|346330218|gb|EGX98483.1| tRNA modification GTPase TrmE [Lactobacillus ruminis ATCC 25644]
Length = 462
Score = 324 bits (831), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 195/480 (40%), Positives = 286/480 (59%), Gaps = 31/480 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVR+SG AV I +VF SG + SH
Sbjct: 7 FDTIAAIST----PPGEGAISIVRMSGEEAVSIAQKVF----------SGKDLTQAKSHT 52
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D + +DEV+ MLAP+++TREDVVE+ CHG V R+L+ L GA L
Sbjct: 53 INYGHIVDPKTHEEIDEVMVSLMLAPKTFTREDVVEINCHGGIVATNRILQLLLVNGARL 112
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFL+GR+DL+QAE+V LI AK+ + AL + G S L+ S+R ++
Sbjct: 113 AEPGEFTKRAFLHGRIDLTQAESVMDLIRAKTDRSMKIALNQLDGNLSHLIDSLRKDILD 172
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L ++E +D+ D++ + L+ +K + Q +E L+TA+ K+++ GL A+VGR
Sbjct: 173 VLAQVEVNIDYPEYDDVEEMTTKLLKEKAIEIKQRIEQLLKTASQGKIMREGLATALVGR 232
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN ++AIVT++AGTTRDVIE V V GVP+ L+DTAGIRETDD VEKI
Sbjct: 233 PNVGKSSLLNHLLHEDKAIVTDVAGTTRDVIEEYVNVSGVPLKLIDTAGIRETDDKVEKI 292
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS+ +D++++ ++A + T ED EL+ R+ ++KK I+++NK D
Sbjct: 293 GVERSKKAIEQSDLVLLVLNAAESLTKEDLELI-RLTNDKKR-------IIILNKTDLEE 344
Query: 447 SAS-NEWNKVGNSFNDHVF-TCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCE 504
E K+ S N V+ T + +G++ LE AI K+ + N R
Sbjct: 345 KLDRKELAKI--SGNAPVYATSILKNEGVEALEEAISKLFFNGIENSQSTVMVTNARHIA 402
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + + +L + I +P+D ID+ +A LG+I+GE +E+L +F +FC+GK
Sbjct: 403 LLEKAQNSLDSVLEGISSGMPVDLVQIDMTEAWNLLGEITGESYEDELLDQLFSQFCLGK 462
>gi|423613628|ref|ZP_17589488.1| tRNA modification GTPase mnmE [Bacillus cereus VD107]
gi|401241693|gb|EJR48080.1| tRNA modification GTPase mnmE [Bacillus cereus VD107]
Length = 458
Score = 324 bits (831), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 187/476 (39%), Positives = 282/476 (59%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ V R+FK G SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKVNRIFK----------GKDLTEVPSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R + +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQEILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++E LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRAEIEKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L +Q I+++NK D
Sbjct: 291 ERSKEMMSQADLVLVVVNYSEVLTNEDEDLFRAVQGK--------DFIVIVNKTDLPQEI 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + N + T + QGI +LE AI + I + + N R L +
Sbjct: 343 DMERVAELAAGNRVITTSLIEEQGIDELEKAIADLFFEGAIDSADMTYVSNARHIGLLTQ 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 403 AGKTIGDAIEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|407796869|ref|ZP_11143820.1| tRNA modification GTPase TrmE [Salimicrobium sp. MJ3]
gi|407018767|gb|EKE31488.1| tRNA modification GTPase TrmE [Salimicrobium sp. MJ3]
Length = 458
Score = 324 bits (831), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 193/475 (40%), Positives = 274/475 (57%), Gaps = 23/475 (4%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
TIAAI T G GA+ IVRLSG AV +F+ G SH + Y
Sbjct: 4 DTIAAISTPTG--EGAIAIVRLSGDDAVSRANELFQ----------GKDLTTVDSHTMHY 51
Query: 153 GVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
G +LD G + +EV+A M AP+++TRED+VE+ CHG V + RVL L GA LA+P
Sbjct: 52 GKLLDPETGEIAEEVMASVMRAPKTFTREDIVEINCHGGLVSVNRVLEIVLAQGARLAEP 111
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DLSQAE V LI AK+ A + AL + G S L+ ++R K +E L
Sbjct: 112 GEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVALKQMDGRLSGLIQNLRQKLLETLA 171
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + +++ +K + ++EN L+TA K+L+ GL AI+GRPNV
Sbjct: 172 QVEVNIDYPEYDDVEEMTNDIMQEKTAEVRDEIENLLQTAKQGKILREGLATAIIGRPNV 231
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSL+N +AIVTE+ GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGVE
Sbjct: 232 GKSSLMNTLVHENKAIVTEVPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVE 291
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS V AD+I++ ++ D T ED +L MI+++NK D +
Sbjct: 292 RSRQVLTEADLILLVLNYGDELTEEDVKLF--------EAARDMNMIVLLNKTDLEQNID 343
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
E K N + T + +GI LE AI +I +G + N R + L ++
Sbjct: 344 IERVKELAGDNPVISTSLIQEEGIDQLENAISSTFFEGEIDSGDMTYVSNVRHVQLLKQS 403
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+AL + +E +P+D ID+ LG+I G+ + E ++ +F +FC+GK
Sbjct: 404 KQALEDAREGMEMGVPIDVVQIDVTRTWELLGEIVGDTVGESLIDELFSQFCLGK 458
>gi|206975796|ref|ZP_03236707.1| tRNA modification GTPase TrmE [Bacillus cereus H3081.97]
gi|217962976|ref|YP_002341554.1| tRNA modification GTPase TrmE [Bacillus cereus AH187]
gi|222098961|ref|YP_002533019.1| tRNA modification gtpase trme [Bacillus cereus Q1]
gi|229142233|ref|ZP_04270757.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST26]
gi|229199692|ref|ZP_04326335.1| tRNA modification GTPase mnmE [Bacillus cereus m1293]
gi|375287505|ref|YP_005107944.1| tRNA modification GTPase TrmE [Bacillus cereus NC7401]
gi|402554412|ref|YP_006595683.1| tRNA modification GTPase TrmE [Bacillus cereus FRI-35]
gi|423355967|ref|ZP_17333591.1| tRNA modification GTPase mnmE [Bacillus cereus IS075]
gi|423374946|ref|ZP_17352283.1| tRNA modification GTPase mnmE [Bacillus cereus AND1407]
gi|423571376|ref|ZP_17547619.1| tRNA modification GTPase mnmE [Bacillus cereus MSX-A12]
gi|423572856|ref|ZP_17548975.1| tRNA modification GTPase mnmE [Bacillus cereus MSX-D12]
gi|423608174|ref|ZP_17584066.1| tRNA modification GTPase mnmE [Bacillus cereus VD102]
gi|206745890|gb|EDZ57286.1| tRNA modification GTPase TrmE [Bacillus cereus H3081.97]
gi|217065834|gb|ACJ80084.1| tRNA modification GTPase TrmE [Bacillus cereus AH187]
gi|221243020|gb|ACM15730.1| tRNA modification GTPase TrmE [Bacillus cereus Q1]
gi|228583787|gb|EEK41962.1| tRNA modification GTPase mnmE [Bacillus cereus m1293]
gi|228641251|gb|EEK97558.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST26]
gi|358356032|dbj|BAL21204.1| tRNA modification GTPase TrmE [Bacillus cereus NC7401]
gi|401080914|gb|EJP89196.1| tRNA modification GTPase mnmE [Bacillus cereus IS075]
gi|401093162|gb|EJQ01277.1| tRNA modification GTPase mnmE [Bacillus cereus AND1407]
gi|401201197|gb|EJR08073.1| tRNA modification GTPase mnmE [Bacillus cereus MSX-A12]
gi|401216325|gb|EJR23037.1| tRNA modification GTPase mnmE [Bacillus cereus MSX-D12]
gi|401238183|gb|EJR44624.1| tRNA modification GTPase mnmE [Bacillus cereus VD102]
gi|401795622|gb|AFQ09481.1| tRNA modification GTPase TrmE [Bacillus cereus FRI-35]
Length = 458
Score = 324 bits (831), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 188/477 (39%), Positives = 285/477 (59%), Gaps = 25/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ V R+FK G SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKVNRIFK----------GKDLTEVPSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++ LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L +Q I+++NK D P A
Sbjct: 291 ERSKEMMSQADLVLVVVNYSEALTNEDEDLFRAVQGK--------DFIVIVNKTDL-PQA 341
Query: 449 SNEWNKVGNSFNDHVFTCA-VTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ + + + V T + + QGI +LETAI + I + + N R L
Sbjct: 342 IDMERVIELAAGNRVITTSLIEEQGIDELETAIADLFFEGTIDSADVTYVSNARHIGLLT 401
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 402 QAGKTIGDAIEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|229159044|ref|ZP_04287100.1| tRNA modification GTPase mnmE [Bacillus cereus ATCC 4342]
gi|228624463|gb|EEK81234.1| tRNA modification GTPase mnmE [Bacillus cereus ATCC 4342]
Length = 458
Score = 324 bits (830), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 188/477 (39%), Positives = 285/477 (59%), Gaps = 25/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ V R+FK G SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKVNRIFK----------GKDLTEVPSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++ LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L +Q I+++NK D P A
Sbjct: 291 ERSKEMMSQADLVLVVVNYSEALTNEDEDLFRAVQGK--------DFIVIVNKTDL-PQA 341
Query: 449 SNEWNKVGNSFNDHVFTCA-VTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ + + + V T + + QGI +LETAI + I + + N R L
Sbjct: 342 IDMERVIELAEENRVITTSLIEEQGIDELETAIADLFFEGTIDSADVTYVSNARHIGLLT 401
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 402 QAGKTIGDAIEAIESGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|281418695|ref|ZP_06249714.1| tRNA modification GTPase TrmE [Clostridium thermocellum JW20]
gi|281407779|gb|EFB38038.1| tRNA modification GTPase TrmE [Clostridium thermocellum JW20]
Length = 459
Score = 324 bits (830), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 184/475 (38%), Positives = 285/475 (60%), Gaps = 25/475 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T G G VGI+R+SG A +I R+F+ K K SH + YG
Sbjct: 6 TIAAISTPHG--AGGVGIIRISGDKAFEIAERIFRGKKDFK---------LIRSHTINYG 54
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+++ +G V+DEVL M P+++TREDVVE+ CHG V L+ +L C++ GA LA+PG
Sbjct: 55 KIINPENGAVLDEVLLSKMEKPKTFTREDVVEINCHGGMVVLKNILELCIKEGARLAEPG 114
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQAE V LI++K+ ++ AA++ ++G S + R+K IELL
Sbjct: 115 EFTKRAFLNGRIDLSQAEAVIDLINSKTNESSKAAISQLEGKLSRKIKDARSKLIELLAH 174
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IE +D+ + ++ + N+V ++I + + + + +++ ++++ G+ I+G+PNVGK
Sbjct: 175 IEVTVDYPEHDIEEITGNMVYEEIGKIKEKLCDIVKSFERGRIIREGIDAVIIGKPNVGK 234
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLN S +AIVT+I GTTRD+IE + + G+P+ ++DTAGIRET+D+VEKIGVE++
Sbjct: 235 SSLLNELSGKSKAIVTDIPGTTRDIIEEYININGIPLRIIDTAGIRETEDVVEKIGVEKT 294
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
AD++IM + A G +D+ +L + K +I++INKID +
Sbjct: 295 HRAIDEADLVIMMIDAKRGMDEDDNRILTMLGDKK--------LIILINKIDLVD--EKQ 344
Query: 452 WNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
N++ + + T G GI +LE AI ++ ++ N R +
Sbjct: 345 INEIESLLKGRKCIRTSVKEGTGISELENAITELFVQGEVSVNEEILLTNIRHKNLIDMA 404
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++ + SI+ +PLD +ID+ DAA LGQI+GE +SE+V+ IF KFC+GK
Sbjct: 405 ISSIEKAMESIDGSMPLDLVSIDITDAADYLGQITGESVSEDVMHEIFSKFCLGK 459
>gi|42784680|ref|NP_981927.1| tRNA modification GTPase TrmE [Bacillus cereus ATCC 10987]
gi|81408275|sp|Q72WU3.1|MNME_BACC1 RecName: Full=tRNA modification GTPase MnmE
gi|42740612|gb|AAS44535.1| tRNA modification GTPase TrmE [Bacillus cereus ATCC 10987]
Length = 458
Score = 324 bits (830), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 187/476 (39%), Positives = 282/476 (59%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ V R+FK G SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKVNRIFK----------GKDLTEVPSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++ LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L +Q I+++NK D +
Sbjct: 291 ERSKEMMSQADLVLVVVNYSEALTNEDEDLFRAVQGK--------DFIVIVNKTDLPQAI 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + N + T + QGI +LETAI + I + + N R L +
Sbjct: 343 DMERVIELAAGNRIITTSLIEEQGIDELETAIADLFFEGTIDSADVTYVSNARHIGLLTQ 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 403 AGKTIGDAIEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|229020710|ref|ZP_04177436.1| tRNA modification GTPase mnmE [Bacillus cereus AH1273]
gi|229026925|ref|ZP_04183248.1| tRNA modification GTPase mnmE [Bacillus cereus AH1272]
gi|423388229|ref|ZP_17365455.1| tRNA modification GTPase mnmE [Bacillus cereus BAG1X1-3]
gi|423416605|ref|ZP_17393694.1| tRNA modification GTPase mnmE [Bacillus cereus BAG3X2-1]
gi|228734383|gb|EEL85054.1| tRNA modification GTPase mnmE [Bacillus cereus AH1272]
gi|228740586|gb|EEL90858.1| tRNA modification GTPase mnmE [Bacillus cereus AH1273]
gi|401109989|gb|EJQ17905.1| tRNA modification GTPase mnmE [Bacillus cereus BAG3X2-1]
gi|401643417|gb|EJS61114.1| tRNA modification GTPase mnmE [Bacillus cereus BAG1X1-3]
Length = 458
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 186/476 (39%), Positives = 280/476 (58%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG A++ V R+FK G + SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAIEKVDRIFK----------GKDLTQVDSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++ LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED EL +Q I+++NK D
Sbjct: 291 ERSKEMMSQADLVLVVVNYSEALTNEDEELFRAVQGK--------DFIIIVNKTDLPQEI 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + N + T + QGI +LE AI + I + + N R L +
Sbjct: 343 DMERVTELAAGNRVITTSLIEEQGIDELEKAIADLFFEGAIDSADMTYVSNTRHIGLLTQ 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 403 AGTTIGDAIEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|254478023|ref|ZP_05091407.1| tRNA modification GTPase TrmE [Carboxydibrachium pacificum DSM
12653]
gi|214036027|gb|EEB76717.1| tRNA modification GTPase TrmE [Carboxydibrachium pacificum DSM
12653]
Length = 460
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 188/477 (39%), Positives = 280/477 (58%), Gaps = 23/477 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI TS G +GIVR+SG A+DI+ R+F+P KKK K+ +H +
Sbjct: 3 FDTIAAISTSPG--EAGIGIVRISGDRALDIISRIFRPYKKKDVKNV-------KTHTLH 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V DEVL M P +YTRED+VE+ CHG V ++L L+ GA LA+
Sbjct: 54 YGHIVDPDTGEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I+AK++ A A + G + ++ + +ELL
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGYLGQKMRKLKDRMMELL 173
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+ A +DF +D++ L +++ + +++E + +A ++++ GL+ AI+G+PNV
Sbjct: 174 AHLLALIDFPEDDVDELERWQMLESAKEILKEIEKLIASAESGRIIREGLKTAIIGKPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA K RAIVT+I GTTRD+IE + V G+P+ L+DTAGIR+TD++VEKIGVE
Sbjct: 234 GKSSLLNALLKENRAIVTDIPGTTRDIIEEYLNVKGIPIRLIDTAGIRDTDELVEKIGVE 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ V AD+++ + A + ED E+ + + + +I V+NKID
Sbjct: 294 RSKEVLGEADLVLFVIDASRELSKEDYEIFDIL--------TGKNIIFVLNKIDLPKKID 345
Query: 450 NEWNKVGNSFNDHVF--TCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
E ++ N D + V G++ LE I +V + G N R E L+
Sbjct: 346 EE--ELRNLTKDGIIVEVSTVKKIGLEKLEETIYNLVFKGNVTIGNEEIITNTRHKEALI 403
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+ + + +IE+ D TIDL A +G+I+GE +E+V+ IF +FC+GK
Sbjct: 404 NAKKYMESVVEAIEKGYSEDLITIDLNSALNEIGKITGETATEDVIDQIFERFCVGK 460
>gi|47568683|ref|ZP_00239380.1| tRNA modification GTPase TrmE [Bacillus cereus G9241]
gi|228988713|ref|ZP_04148798.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|47554671|gb|EAL13025.1| tRNA modification GTPase TrmE [Bacillus cereus G9241]
gi|228771025|gb|EEM19506.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 458
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 188/477 (39%), Positives = 285/477 (59%), Gaps = 25/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ V R+FK G SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKVNRIFK----------GKDLTEVPSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++ LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L +Q I+++NK D P A
Sbjct: 291 ERSKEMMSQADLVLVVVNYSEALTNEDEDLFRAVQGK--------DFIVIVNKTDL-PQA 341
Query: 449 SNEWNKVGNSFNDHVFTCA-VTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ + + + V T + + QGI +LETAI + I + + N R L
Sbjct: 342 IDMERVIELAEGNRVITTSLIEEQGIDELETAIADLFFEGTIDSADVTYVSNARHIGLLT 401
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 402 QAGKTIGDAIEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|423484493|ref|ZP_17461182.1| tRNA modification GTPase mnmE [Bacillus cereus BAG6X1-2]
gi|401137954|gb|EJQ45529.1| tRNA modification GTPase mnmE [Bacillus cereus BAG6X1-2]
Length = 458
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 187/479 (39%), Positives = 285/479 (59%), Gaps = 29/479 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG A++ V R+FK G + +SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAIEKVDRIFK----------GKDLTQVSSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R + +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGYLRQEILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
IE +D+ D++ + N++++K + +++ LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHIEVNIDYPEYDDVEEMTHNILIEKATHVRAEIKKILETSKQGKILREGISTAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L +Q I+++NK D
Sbjct: 291 ERSKEMMSQADLVLVVVNYSEALTNEDEDLFRAVQGK--------DFIVIVNKTDLPQEI 342
Query: 449 SNEWNK---VGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
E VGN + T + +GI +LE AI + I + + N R
Sbjct: 343 DMERVTDLAVGNRV---ITTSLIEEKGIDELEKAIADLFFEGTIDSADMTYVSNVRHIGL 399
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + + + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 400 LTQAGKTISDAIEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|118480511|ref|YP_897662.1| tRNA modification GTPase TrmE [Bacillus thuringiensis str. Al
Hakam]
gi|166200468|sp|A0RLR2.1|MNME_BACAH RecName: Full=tRNA modification GTPase MnmE
gi|118419736|gb|ABK88155.1| tRNA modification GTPase trmE [Bacillus thuringiensis str. Al
Hakam]
Length = 458
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 188/477 (39%), Positives = 284/477 (59%), Gaps = 25/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ V R+FK G SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKVNRIFK----------GKDLTEVPSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++ LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRSEIAKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED EL +Q I+++NK D P A
Sbjct: 291 ERSKEMMSQADLVLVVVNYSEALTNEDEELFRAVQGK--------DFIVIVNKTDL-PQA 341
Query: 449 SNEWNKVGNSFNDHVFTCA-VTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ + + + V T + + QGI +LE AI + I + + N R L
Sbjct: 342 IDMERVIELAAGNRVITTSLIEEQGIDELEKAIADLFFEGTIDSADVTYVSNARHIGLLT 401
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 402 QAGKTIGDAIEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|422810847|ref|ZP_16859258.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J1-208]
gi|378751052|gb|EHY61643.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J1-208]
Length = 457
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 196/477 (41%), Positives = 276/477 (57%), Gaps = 26/477 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ I+RLSGP A+ I R+F K+S S SH
Sbjct: 3 FDTIAAIST----PPGEGAIAIIRLSGPEAIQIADRIFYA------KNSLS---EAESHT 49
Query: 150 VEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
+ YG + G V++EV+ M APR++TREDVVE+ HG V + RVL+ L GA LA
Sbjct: 50 IHYGHI-KEDGEVIEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLRNGANLA 108
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V LI AK+ A A+ + G S L+ ++R + ++
Sbjct: 109 EPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDA 168
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ + ++++K + VE L TA+ K+L+ GL AI+GRP
Sbjct: 169 LAQVEVNIDYPEYDDVEEMTQRMLLEKTELVRASVEQLLRTASQGKILREGLATAIIGRP 228
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN + E+AIVT+IAGTTRD+IE V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 229 NVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIG 288
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD I++ ++ + T ED L + ++V+NK D
Sbjct: 289 VERSRKALADADFILLVLNQNEELTVEDEALF--------EAAAGHNYVVVLNKTDLETR 340
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ N V T V +G++ LE AI + I AG + N R L
Sbjct: 341 LDINRVRELAGENPIVSTSLVNDEGLEALEEAIKALFFAGGIDAGDATYVSNVRHIALLH 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ EAL + + I+ +P+D ID+ A LG+I+G+ + +E+L +F +FC+GK
Sbjct: 401 QALEALNGVTTGIQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457
>gi|125974850|ref|YP_001038760.1| tRNA modification GTPase TrmE [Clostridium thermocellum ATCC 27405]
gi|256003893|ref|ZP_05428880.1| tRNA modification GTPase TrmE [Clostridium thermocellum DSM 2360]
gi|385780292|ref|YP_005689457.1| tRNA modification GTPase TrmE [Clostridium thermocellum DSM 1313]
gi|419721182|ref|ZP_14248373.1| tRNA modification GTPase TrmE [Clostridium thermocellum AD2]
gi|419726578|ref|ZP_14253600.1| tRNA modification GTPase TrmE [Clostridium thermocellum YS]
gi|205829145|sp|A3DHY8.1|MNME_CLOTH RecName: Full=tRNA modification GTPase MnmE
gi|125715075|gb|ABN53567.1| tRNA modification GTPase TrmE [Clostridium thermocellum ATCC 27405]
gi|255992231|gb|EEU02326.1| tRNA modification GTPase TrmE [Clostridium thermocellum DSM 2360]
gi|316941972|gb|ADU76006.1| tRNA modification GTPase TrmE [Clostridium thermocellum DSM 1313]
gi|380770175|gb|EIC04073.1| tRNA modification GTPase TrmE [Clostridium thermocellum YS]
gi|380782882|gb|EIC12489.1| tRNA modification GTPase TrmE [Clostridium thermocellum AD2]
Length = 459
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 184/475 (38%), Positives = 285/475 (60%), Gaps = 25/475 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T G G VGI+R+SG A +I R+F+ K K SH + YG
Sbjct: 6 TIAAISTPHG--AGGVGIIRISGDKAFEIAERIFRGKKDFK---------LIRSHTINYG 54
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+++ +G V+DEVL M P+++TREDVVE+ CHG V L+ +L C++ GA LA+PG
Sbjct: 55 KIVNPENGAVLDEVLLSKMEKPKTFTREDVVEINCHGGMVVLKNILELCIKEGARLAEPG 114
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQAE V LI++K+ ++ AA++ ++G S + R+K IELL
Sbjct: 115 EFTKRAFLNGRIDLSQAEAVIDLINSKTNESSKAAISQLEGKLSRKIKDARSKLIELLAH 174
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IE +D+ + ++ + N+V ++I + + + + +++ ++++ G+ I+G+PNVGK
Sbjct: 175 IEVTVDYPEHDIEEITGNMVYEEIGKIKEKLCDIVKSFERGRIIREGIDAVIIGKPNVGK 234
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLN S +AIVT+I GTTRD+IE + + G+P+ ++DTAGIRET+D+VEKIGVE++
Sbjct: 235 SSLLNELSGKSKAIVTDIPGTTRDIIEEYININGIPLRIIDTAGIRETEDVVEKIGVEKT 294
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
AD++IM + A G +D+ +L + K +I++INKID +
Sbjct: 295 HRAIDEADLVIMMIDAKRGMDEDDNRILTMLGDKK--------LIILINKIDLVD--EKQ 344
Query: 452 WNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
N++ + + T G GI +LE AI ++ ++ N R +
Sbjct: 345 INEIESLLKGRKCIRTSVKEGTGISELENAITELFVQGEVSVNEEILLTNIRHKNLIDMA 404
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++ + SI+ +PLD +ID+ DAA LGQI+GE +SE+V+ IF KFC+GK
Sbjct: 405 ISSIEKAMESIDGSMPLDLVSIDITDAADYLGQITGESVSEDVMHEIFSKFCLGK 459
>gi|309804827|ref|ZP_07698889.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 09V1-c]
gi|309809783|ref|ZP_07703637.1| tRNA modification GTPase TrmE [Lactobacillus iners SPIN 2503V10-D]
gi|308165766|gb|EFO67987.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 09V1-c]
gi|308169962|gb|EFO72001.1| tRNA modification GTPase TrmE [Lactobacillus iners SPIN 2503V10-D]
Length = 461
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 183/477 (38%), Positives = 290/477 (60%), Gaps = 27/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
+ TIAAI T IG G + I+R+SG A++IV ++F+ G+ + SH +
Sbjct: 8 YDTIAAIATPIG--EGGISIIRVSGENALEIVNKIFR----------GANLNKVASHTIH 55
Query: 152 YGVVLDR-HGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + +VVDEVLA MLAP+++TRE+ VE+ CHG + ++L+ L+ GA +A
Sbjct: 56 YGHIIDYANKDVVDEVLATVMLAPKTFTRENTVEVSCHGGLLVTEKILQLILDNGARMAT 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE++ +I AK+ A A+ ++GG + +R + + +
Sbjct: 116 PGEFTKRAFINGRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTM 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
E +D+ + +M + + DK + ++++ L TA K+++SGL AIVGRPNV
Sbjct: 176 AHEEVNIDYPEYDMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN SK E+AIVT IAGTTRD +E V++ G+ + L+DTAGIR+TDDIVEKIGVE
Sbjct: 236 GKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID-CAPSA 448
RS+ +D++++ +++ + T ED +LL Q K+ I+++NK D A
Sbjct: 296 RSKRAITESDLVLLLINSSEELTEEDQKLLKLTQDKKR--------IVILNKADQVAKIT 347
Query: 449 SNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ K+ +S + T +V Q + LE AI + + NQRQ + L
Sbjct: 348 KKDIQKITDS---PIVTISVLKKQNMIGLEEAIKSLFLQGITDSKSEVMVTNQRQNDLLR 404
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K++L+ +I + +PLD IDL++A +LG+I+G+ +E+++ +F KFC+GK
Sbjct: 405 KAKQSLIEAIEAINDNMPLDLVQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461
>gi|384183351|ref|YP_005569113.1| tRNA modification GTPase TrmE [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324329435|gb|ADY24695.1| tRNA modification GTPase TrmE [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 458
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 187/476 (39%), Positives = 282/476 (59%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ V R+FK G SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKVNRIFK----------GKDLTEVPSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGCLRQDILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++ LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L +Q I+++NK D +
Sbjct: 291 ERSKEMMSQADLVLVVVNYSEALTNEDEDLFRAVQGK--------DFIVIVNKTDLPQAI 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + N + T + QGI +LETAI + I + + N R L +
Sbjct: 343 DMERVIELAAGNRIITTSLIEEQGIDELETAIADLFFEGTIDSADVTYVSNARHIGLLTQ 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 403 AGKTIGDAIEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|312872669|ref|ZP_07732734.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2062A-h1]
gi|311091711|gb|EFQ50090.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2062A-h1]
Length = 461
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 182/477 (38%), Positives = 290/477 (60%), Gaps = 27/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
+ TIAAI T IG G + I+R+SG A++IV ++F+ G+ + SH +
Sbjct: 8 YDTIAAIATPIG--EGGISIIRVSGENALEIVNKIFR----------GANLNKVASHTIH 55
Query: 152 YGVVLDR-HGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + +VVDEVL MLAP+++TRE+ VE+ CHG + +++L+ L+ GA +A
Sbjct: 56 YGHIIDYANKDVVDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTQKILQLILDNGARMAT 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE++ +I AK+ A A+ ++GG + +R + + +
Sbjct: 116 PGEFTKRAFINGRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTM 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
E +D+ + +M + + DK + ++++ L TA K+++SGL AIVGRPNV
Sbjct: 176 AHEEVNIDYPEYDMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN SK E+AIVT IAGTTRD +E V++ G+ + L+DTAGIR+TDDIVEKIGVE
Sbjct: 236 GKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID-CAPSA 448
RS+ +D++++ +++ + T ED +LL Q K+ I+++NK D A
Sbjct: 296 RSKRAITESDLVLLLINSSEELTEEDQKLLELTQDKKR--------IIILNKADQVAKIT 347
Query: 449 SNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ K+ +S + T +V Q + LE AI + + NQRQ + L
Sbjct: 348 KKDIQKITDS---PIVTISVLKKQNMTGLEEAIKSLFLQGITDSKSEVMVTNQRQNDLLR 404
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K++L+ +I + +PLD IDL++A +LG+I+G+ +E+++ +F KFC+GK
Sbjct: 405 KAKQSLIEAIEAINDNMPLDLVQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461
>gi|431739134|ref|ZP_19528074.1| tRNA modification GTPase mnmE [Enterococcus faecium E1972]
gi|430596677|gb|ELB34501.1| tRNA modification GTPase mnmE [Enterococcus faecium E1972]
Length = 465
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 191/483 (39%), Positives = 285/483 (59%), Gaps = 35/483 (7%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVRLSG AV + +V+ K+ + SH
Sbjct: 8 FDTIAAIST----PPGEGAISIVRLSGDQAVQLADKVYHSGNKRLSEVQ--------SHT 55
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D + +VDEV+ M AP+++TREDVVE+ CHG V + ++L+ L GA L
Sbjct: 56 IHYGHIVDPKSDQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLREGARL 115
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQAE V LI AK+ A AL + G S+L+ S+R + +E
Sbjct: 116 AEPGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILE 175
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L ++E +D+ D++ L L+++K + Q ++ L T+ K+L+ GL AI+GR
Sbjct: 176 TLAQVEVNIDYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGR 235
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+I
Sbjct: 236 PNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERI 295
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS AD+I++ ++ + T+ED +LL K+ I+++NK D
Sbjct: 296 GVERSRKALAEADLILLVLNQSEPLTAEDEQLLEATSGLKR--------IILLNKTDLPA 347
Query: 447 SAS----NEWNKVGNSFNDHVFTCAVT-GQGIQDLETAIMKIVGLHQIPAGGRRWAVNQR 501
N+WN+ N+ VF+ +V G+ LE+AI + + + N R
Sbjct: 348 QLEQEKLNKWNE-----NEPVFSISVAKNDGLDRLESAISDLFFSGETGERDATYVSNTR 402
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
L + +L + + I+ +P+D ID+ LG++ G+ + +E+++ +F +FC
Sbjct: 403 HIALLEKASLSLEEVIAGIDAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFC 462
Query: 562 IGK 564
+GK
Sbjct: 463 LGK 465
>gi|430842559|ref|ZP_19460472.1| tRNA modification GTPase mnmE [Enterococcus faecium E1007]
gi|430492980|gb|ELA69316.1| tRNA modification GTPase mnmE [Enterococcus faecium E1007]
Length = 465
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 193/486 (39%), Positives = 288/486 (59%), Gaps = 41/486 (8%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT--- 146
F TIAAI T PPG A+ IVRLSG AV + +V+ SG+ R +
Sbjct: 8 FDTIAAIST----PPGEGAISIVRLSGDQAVQLADKVYH-----------SGNKRLSEVP 52
Query: 147 SHVVEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAG 205
SH + YG ++D + +VDEV+ M AP+++TREDVVE+ CHG V + ++L+ L G
Sbjct: 53 SHTIHYGHIVDPKSDQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLREG 112
Query: 206 ATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAK 265
A LA+PGEFT RAFLNGR+DLSQAE V LI AK+ A AL + G S+L+ S+R +
Sbjct: 113 ARLAEPGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQE 172
Query: 266 CIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
+E L ++E +D+ D++ L L+++K + Q ++ L T+ K+L+ GL AI
Sbjct: 173 ILETLAQVEVNIDYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAI 232
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383
+GRPNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+V
Sbjct: 233 IGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVV 292
Query: 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443
E+IGVERS AD+I++ ++ + T+ED +LL K+ I+++NK D
Sbjct: 293 ERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLEATSGLKR--------IILLNKTD 344
Query: 444 CAPSAS----NEWNKVGNSFNDHVFTCAVT-GQGIQDLETAIMKIVGLHQIPAGGRRWAV 498
N+WN+ N+ VF+ +V G+ LE+AI ++ + +
Sbjct: 345 LPAQLEQEKLNKWNE-----NEPVFSISVAKNDGLDRLESAISELFFSGETGERDATYVS 399
Query: 499 NQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFG 558
N R L + +L + + I+ +P+D ID+ LG++ G+ + +E+++ +F
Sbjct: 400 NTRHIALLEKASLSLEEVIAGIDAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFS 459
Query: 559 KFCIGK 564
+FC+GK
Sbjct: 460 QFCLGK 465
>gi|52145292|ref|YP_086749.1| tRNA modification GTPase TrmE [Bacillus cereus E33L]
gi|196041935|ref|ZP_03109222.1| tRNA modification GTPase TrmE [Bacillus cereus NVH0597-99]
gi|225867465|ref|YP_002752843.1| tRNA modification GTPase TrmE [Bacillus cereus 03BB102]
gi|229187713|ref|ZP_04314849.1| tRNA modification GTPase mnmE [Bacillus cereus BGSC 6E1]
gi|376269400|ref|YP_005122112.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Bacillus cereus
F837/76]
gi|81685202|sp|Q630B8.1|MNME_BACCZ RecName: Full=tRNA modification GTPase MnmE
gi|51978761|gb|AAU20311.1| tRNA modification GTPase [Bacillus cereus E33L]
gi|196027190|gb|EDX65810.1| tRNA modification GTPase TrmE [Bacillus cereus NVH0597-99]
gi|225785903|gb|ACO26120.1| tRNA modification GTPase TrmE [Bacillus cereus 03BB102]
gi|228595781|gb|EEK53465.1| tRNA modification GTPase mnmE [Bacillus cereus BGSC 6E1]
gi|364515200|gb|AEW58599.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Bacillus cereus
F837/76]
Length = 458
Score = 323 bits (828), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 188/477 (39%), Positives = 284/477 (59%), Gaps = 25/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ V R+FK G SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKVNRIFK----------GKDLTEVPSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++ LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED EL +Q I+++NK D P A
Sbjct: 291 ERSKEMMSQADLVLVVVNYSEALTNEDEELFRAVQGK--------DFIVIVNKTDL-PQA 341
Query: 449 SNEWNKVGNSFNDHVFTCA-VTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ + + + V T + + QGI +LE AI + I + + N R L
Sbjct: 342 IDMERVIELAAGNRVITTSLIEEQGIDELEKAIADLFFEGTIDSADVTYVSNARHIGLLT 401
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 402 QAGKTIGDAIEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|375089984|ref|ZP_09736306.1| tRNA modification GTPase TrmE [Facklamia languida CCUG 37842]
gi|374566270|gb|EHR37517.1| tRNA modification GTPase TrmE [Facklamia languida CCUG 37842]
Length = 458
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 181/474 (38%), Positives = 285/474 (60%), Gaps = 24/474 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++G GA+GIVR+SGP A+D V +VFK G + SH + YG
Sbjct: 6 TIAAISTALG--EGAIGIVRMSGPEAIDWVSQVFK----------GKDLNQVASHTIHYG 53
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ ++ G V+DEV+ + P++YTRED+VE+ CHG + ++ +L CL GA LAQPGE
Sbjct: 54 HLCNQEGQVIDEVMVTILRGPKTYTREDIVEINCHGGMMAVQSILDVCLSLGARLAQPGE 113
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGR+DLSQAE + +I +K+ A +A++ +QG S+ ++++R + +E L ++
Sbjct: 114 FTKRAFLNGRIDLSQAEALMDVIQSKTSQAMEASMNQLQGSLSTKISALRQEMLETLAQV 173
Query: 274 EARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
E +D+ D++ ++ + + + + V++ L+ A +L + G+Q AI+GRPNVGK
Sbjct: 174 EVTIDYPEYDDVDDMSNDQLRQTALTVKEQVQSILQEAQGGRLFREGIQTAIIGRPNVGK 233
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLN + S++AIVTEI GTTRD IE + V GVP+ L+DTAGIRETD++VE+IGV +S
Sbjct: 234 SSLLNRLTGSDKAIVTEIEGTTRDSIEEYINVKGVPLHLIDTAGIRETDEVVEQIGVTKS 293
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS-N 450
+ AD+II+ ++ + T D ELL + K+ ++V+NK D +
Sbjct: 294 RQIMAKADLIILVLNQSEPLTDTDKELLELTKDQKR--------LIVLNKEDLPCQMDLD 345
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+ +K+ ++ + V Q +Q LE I + + +N R + L +T
Sbjct: 346 QLSKLATK-DEWIVLSMVADQNLQALEDRIADFFYQGGLNMKDVNYLLNSRHTQLLKQTI 404
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+AL + + + LP+D ID A LG+I+GE + +E+L +F +FC+GK
Sbjct: 405 QALDEVIQASQAGLPVDLIQIDYVRAWDLLGEITGESVQDELLDKLFSQFCLGK 458
>gi|30265502|ref|NP_847879.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Ames]
gi|49188321|ref|YP_031574.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Sterne]
gi|49480475|ref|YP_039474.1| tRNA modification GTPase TrmE [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|50196974|ref|YP_052661.1| tRNA modification GTPase TrmE [Bacillus anthracis str. 'Ames
Ancestor']
gi|65317465|ref|ZP_00390424.1| COG0486: Predicted GTPase [Bacillus anthracis str. A2012]
gi|165873022|ref|ZP_02217643.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0488]
gi|167635055|ref|ZP_02393372.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0442]
gi|167641744|ref|ZP_02399987.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0193]
gi|170689483|ref|ZP_02880673.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0465]
gi|170707531|ref|ZP_02897984.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0389]
gi|177655270|ref|ZP_02936824.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0174]
gi|190569290|ref|ZP_03022184.1| tRNA modification GTPase TrmE [Bacillus anthracis str.
Tsiankovskii-I]
gi|196036118|ref|ZP_03103518.1| tRNA modification GTPase TrmE [Bacillus cereus W]
gi|196045402|ref|ZP_03112633.1| tRNA modification GTPase TrmE [Bacillus cereus 03BB108]
gi|218906676|ref|YP_002454510.1| tRNA modification GTPase TrmE [Bacillus cereus AH820]
gi|227818253|ref|YP_002818262.1| tRNA modification GTPase TrmE [Bacillus anthracis str. CDC 684]
gi|228918096|ref|ZP_04081624.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228930490|ref|ZP_04093490.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228936764|ref|ZP_04099555.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228949206|ref|ZP_04111474.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229094595|ref|ZP_04225662.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-42]
gi|229124987|ref|ZP_04254161.1| tRNA modification GTPase mnmE [Bacillus cereus 95/8201]
gi|229600776|ref|YP_002869693.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0248]
gi|254687075|ref|ZP_05150933.1| tRNA modification GTPase TrmE [Bacillus anthracis str. CNEVA-9066]
gi|254724142|ref|ZP_05185927.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A1055]
gi|254735159|ref|ZP_05192869.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Western
North America USA6153]
gi|254742132|ref|ZP_05199819.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Kruger B]
gi|254755958|ref|ZP_05207990.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Vollum]
gi|254761362|ref|ZP_05213384.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Australia
94]
gi|301056958|ref|YP_003795169.1| tRNA modification GTPase TrmE [Bacillus cereus biovar anthracis
str. CI]
gi|386739348|ref|YP_006212529.1| tRNA modification GTPase trmE [Bacillus anthracis str. H9401]
gi|421508134|ref|ZP_15955050.1| tRNA modification GTPase TrmE [Bacillus anthracis str. UR-1]
gi|421640481|ref|ZP_16081064.1| tRNA modification GTPase TrmE [Bacillus anthracis str. BF1]
gi|423554065|ref|ZP_17530391.1| tRNA modification GTPase mnmE [Bacillus cereus ISP3191]
gi|46577421|sp|Q81JD9.1|MNME_BACAN RecName: Full=tRNA modification GTPase MnmE
gi|81394076|sp|Q6HAF2.1|MNME_BACHK RecName: Full=tRNA modification GTPase MnmE
gi|30260180|gb|AAP29365.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Ames]
gi|49182248|gb|AAT57624.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Sterne]
gi|49332031|gb|AAT62677.1| tRNA modification GTPase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|50083036|gb|AAT70169.1| tRNA modification GTPase TrmE [Bacillus anthracis str. 'Ames
Ancestor']
gi|164711234|gb|EDR16790.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0488]
gi|167510298|gb|EDR85701.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0193]
gi|167529529|gb|EDR92279.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0442]
gi|170127527|gb|EDS96401.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0389]
gi|170666585|gb|EDT17358.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0465]
gi|172080197|gb|EDT65289.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0174]
gi|190559597|gb|EDV13588.1| tRNA modification GTPase TrmE [Bacillus anthracis str.
Tsiankovskii-I]
gi|195991285|gb|EDX55253.1| tRNA modification GTPase TrmE [Bacillus cereus W]
gi|196023609|gb|EDX62285.1| tRNA modification GTPase TrmE [Bacillus cereus 03BB108]
gi|218538645|gb|ACK91043.1| tRNA modification GTPase TrmE [Bacillus cereus AH820]
gi|227004482|gb|ACP14225.1| tRNA modification GTPase TrmE [Bacillus anthracis str. CDC 684]
gi|228658488|gb|EEL14154.1| tRNA modification GTPase mnmE [Bacillus cereus 95/8201]
gi|228688842|gb|EEL42673.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-42]
gi|228810489|gb|EEM56842.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228822973|gb|EEM68814.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228829209|gb|EEM74846.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228841576|gb|EEM86692.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229265184|gb|ACQ46821.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0248]
gi|300379127|gb|ADK08031.1| tRNA modification GTPase TrmE [Bacillus cereus biovar anthracis
str. CI]
gi|384389199|gb|AFH86860.1| tRNA modification GTPase trmE [Bacillus anthracis str. H9401]
gi|401181498|gb|EJQ88646.1| tRNA modification GTPase mnmE [Bacillus cereus ISP3191]
gi|401821937|gb|EJT21091.1| tRNA modification GTPase TrmE [Bacillus anthracis str. UR-1]
gi|403392434|gb|EJY89687.1| tRNA modification GTPase TrmE [Bacillus anthracis str. BF1]
Length = 458
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 188/477 (39%), Positives = 284/477 (59%), Gaps = 25/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ V R+FK G SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKVNRIFK----------GKDLTEVPSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++ LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED EL +Q I+++NK D P A
Sbjct: 291 ERSKEMMSQADLVLVVVNYSETLTNEDEELFRAVQGK--------DFIVIVNKTDL-PQA 341
Query: 449 SNEWNKVGNSFNDHVFTCA-VTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ + + + V T + + QGI +LE AI + I + + N R L
Sbjct: 342 IDMERVIELAAGNRVITTSLIEEQGIDELEKAIADLFFEGTIDSADVTYVSNARHIGLLT 401
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 402 QAGKTIGDAIEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|312873279|ref|ZP_07733334.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2052A-d]
gi|311091159|gb|EFQ49548.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2052A-d]
Length = 461
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 182/477 (38%), Positives = 289/477 (60%), Gaps = 27/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
+ TIAAI T IG G + I+R+SG A++IV ++F+ G+ + SH +
Sbjct: 8 YDTIAAIATPIG--EGGISIIRVSGENALEIVNKIFR----------GANLNKVASHTIH 55
Query: 152 YGVVLDR-HGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + +VVDEVL MLAP+++TRE+ VE+ CHG + ++L+ L+ GA +A
Sbjct: 56 YGHIIDYANKDVVDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTEKILQLILDNGARMAT 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE++ +I AK+ A A+ ++GG + +R + + +
Sbjct: 116 PGEFTKRAFINGRIDLTQAESIMDIIEAKTDRARQVAIKQLEGGLLFEIRKLRQELLNTM 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
E +D+ + +M + + DK + ++++ L TA K+++SGL AIVGRPNV
Sbjct: 176 AHEEVNIDYPEYDMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN SK E+AIVT IAGTTRD +E V++ G+ + L+DTAGIR+TDDIVEKIGVE
Sbjct: 236 GKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID-CAPSA 448
RS+ +D++++ +++ + T ED +LL Q K+ I+++NK D A
Sbjct: 296 RSKRAITESDLVLLLINSSEELTEEDQKLLELTQDKKR--------IIILNKADQVAKIT 347
Query: 449 SNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ K+ +S + T +V Q + LE AI + + NQRQ + L
Sbjct: 348 KKDIQKITDS---PIVTISVLKKQNMTGLEEAIKSLFLQGIADSKSEVMVTNQRQNDLLR 404
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K++L+ +I + +PLD IDL++A +LG+I+G+ +E+++ +F KFC+GK
Sbjct: 405 KAKQSLIEAIEAINDNMPLDLVQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461
>gi|293572712|ref|ZP_06683676.1| tRNA modification GTPase TrmE [Enterococcus faecium E980]
gi|291607204|gb|EFF36562.1| tRNA modification GTPase TrmE [Enterococcus faecium E980]
Length = 465
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 193/486 (39%), Positives = 287/486 (59%), Gaps = 41/486 (8%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT--- 146
F TIAAI T PPG A+ IVRLSG AV + +V+ SG+ R +
Sbjct: 8 FDTIAAIST----PPGEGAISIVRLSGDQAVQLADKVYH-----------SGNKRLSEVP 52
Query: 147 SHVVEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAG 205
SH + YG ++D + +VDEV+ M AP+++TREDVVE+ CHG V + ++L+ L G
Sbjct: 53 SHTIHYGHIVDPKSDQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLREG 112
Query: 206 ATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAK 265
A LA+PGEFT RAFLNGR+DLSQAE V LI AK+ A AL + G S+L+ S+R +
Sbjct: 113 ARLAEPGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQE 172
Query: 266 CIELLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
+E L ++E +D+ D++ L L+++K + Q ++ L T+ K+L+ GL AI
Sbjct: 173 ILETLAQVEVNIDYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAI 232
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383
+GRPNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+V
Sbjct: 233 IGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVV 292
Query: 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443
E+IGVERS AD+I++ ++ + T+ED +LL K+ I+++NK D
Sbjct: 293 ERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLEATSGLKR--------IILLNKTD 344
Query: 444 CAPSAS----NEWNKVGNSFNDHVFTCAVT-GQGIQDLETAIMKIVGLHQIPAGGRRWAV 498
N+WN+ N+ VF+ +V G+ LE+AI + + +
Sbjct: 345 LPAQLEQEKLNKWNE-----NEPVFSISVAKNDGLDRLESAISDLFFSGETGERDATYVS 399
Query: 499 NQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFG 558
N R L + +L + + I+ +P+D ID+ LG++ G+ + +E+++ +F
Sbjct: 400 NTRHIALLEKASLSLEEVIAGIDAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFS 459
Query: 559 KFCIGK 564
+FC+GK
Sbjct: 460 QFCLGK 465
>gi|352518723|ref|YP_004888040.1| tRNA modification GTPase TrmE [Tetragenococcus halophilus NBRC
12172]
gi|348602830|dbj|BAK95876.1| tRNA modification GTPase TrmE [Tetragenococcus halophilus NBRC
12172]
Length = 464
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 187/479 (39%), Positives = 279/479 (58%), Gaps = 28/479 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVRLSG A+ + +FK + + +SH
Sbjct: 8 FDTIAAIST----PPGEGAISIVRLSGEEAISVADGIFK---------AKDALAQASSHT 54
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D + +DEV+ M AP+++TRED+VE+ CHG + + ++L+ L GA L
Sbjct: 55 IHYGHIVDPKTEKTLDEVMVSVMRAPKTFTREDIVEINCHGGMIVVNQILQLLLRTGARL 114
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL + G S L+ ++R + ++
Sbjct: 115 AEPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDKAMNVALNQLDGDLSRLIRTLRQEVLD 174
Query: 269 LLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L ++E +D+ D++ + L+++K + Q +++ LETA K+L+ GL AI+GR
Sbjct: 175 TLAQVEVNIDYPEYDDVEEMTSQLLLEKAGQVKQQIQSLLETAQQGKILREGLNTAIIGR 234
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN K E+AIVTEIAGTTRDV+E V V GVP+ L+DTAGIR+T+D VEKI
Sbjct: 235 PNVGKSSLLNQLLKEEKAIVTEIAGTTRDVVEEYVNVRGVPLQLIDTAGIRDTEDTVEKI 294
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS AD++++ ++ + ED +LL + +K+ I+++NK D P
Sbjct: 295 GVERSRKALSEADLVLLVLNQSEPLAKEDRQLLEMTKGSKR--------IILLNKTDLIP 346
Query: 447 SASNEWNKVGNSFNDHVFTCAVT-GQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
D +F +VT QG+ LE AI + Q + N R
Sbjct: 347 QLDLNELNDLLQ-GDPMFEVSVTNNQGLDQLEEAISALFFGGQTQDKDASYLSNTRHISL 405
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L AL + + I+ +P+D ID+ LG+I G+ + +E+++ +F +FC+GK
Sbjct: 406 LENASSALDEVIAGIKAGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 464
>gi|259500781|ref|ZP_05743683.1| tRNA modification GTPase TrmE [Lactobacillus iners DSM 13335]
gi|302190768|ref|ZP_07267022.1| tRNA modification GTPase TrmE [Lactobacillus iners AB-1]
gi|309805912|ref|ZP_07699944.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 03V1-b]
gi|315654126|ref|ZP_07907042.1| tRNA modification GTPase TrmE [Lactobacillus iners ATCC 55195]
gi|325913694|ref|ZP_08176056.1| tRNA modification GTPase TrmE [Lactobacillus iners UPII 60-B]
gi|349612041|ref|ZP_08891269.1| tRNA modification GTPase mnmE [Lactobacillus sp. 7_1_47FAA]
gi|259167475|gb|EEW51970.1| tRNA modification GTPase TrmE [Lactobacillus iners DSM 13335]
gi|308167688|gb|EFO69835.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 03V1-b]
gi|315488822|gb|EFU78468.1| tRNA modification GTPase TrmE [Lactobacillus iners ATCC 55195]
gi|325477053|gb|EGC80203.1| tRNA modification GTPase TrmE [Lactobacillus iners UPII 60-B]
gi|348609216|gb|EGY59176.1| tRNA modification GTPase mnmE [Lactobacillus sp. 7_1_47FAA]
Length = 461
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 182/477 (38%), Positives = 290/477 (60%), Gaps = 27/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
+ TIAAI T IG G + I+R+SG A++IV ++F+ G+ + SH +
Sbjct: 8 YDTIAAIATPIG--EGGISIIRVSGENALEIVNKIFR----------GANLNKVASHTIH 55
Query: 152 YGVVLDR-HGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + +VVDEVL MLAP+++TRE+ VE+ CHG + +++L+ L+ GA +A
Sbjct: 56 YGHIIDYANKDVVDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTQKILQLILDNGARMAT 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE++ +I AK+ A A+ ++GG + +R + + +
Sbjct: 116 PGEFTKRAFINGRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTM 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
E +D+ + +M + + DK + ++++ L TA K+++SGL AIVGRPNV
Sbjct: 176 AHEEVNIDYPEYDMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN SK E+AIVT IAGTTRD +E V++ G+ + L+DTAGIR+TDDIVEKIGVE
Sbjct: 236 GKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID-CAPSA 448
RS+ +D++++ +++ + T ED +LL Q K+ I+++NK D A
Sbjct: 296 RSKRAITESDLVLLLINSSEELTEEDQKLLELTQDKKR--------IVILNKADQVAKIT 347
Query: 449 SNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ K+ +S + T +V Q + LE AI + + NQRQ + L
Sbjct: 348 KKDIQKITDS---PIVTISVLKKQNMIGLEEAIKSLFLQGITDSKSEVMVTNQRQNDLLR 404
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K++L+ +I + +PLD IDL++A +LG+I+G+ +E+++ +F KFC+GK
Sbjct: 405 KAKQSLIEAIEAINDNMPLDLVQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461
>gi|309804055|ref|ZP_07698136.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 11V1-d]
gi|308163823|gb|EFO66089.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 11V1-d]
Length = 461
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 182/477 (38%), Positives = 289/477 (60%), Gaps = 27/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
+ TIAAI T IG G + I+R+SG A++IV ++F+ G+ + SH +
Sbjct: 8 YDTIAAIATPIG--EGGISIIRVSGENALEIVNKIFR----------GANLNKVASHTIH 55
Query: 152 YGVVLDR-HGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + +VVDEVL MLAP+++TRE+ VE+ CHG + ++L+ L+ GA +A
Sbjct: 56 YGHIIDYANKDVVDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTEKILQLILDNGARMAT 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE++ +I AK+ A A+ ++GG + +R + + +
Sbjct: 116 PGEFTKRAFINGRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTM 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
E +D+ + +M + + DK + ++++ L TA K+++SGL AIVGRPNV
Sbjct: 176 AHEEVNIDYPEYDMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN SK E+AIVT IAGTTRD +E V++ G+ + L+DTAGIR+TDDIVEKIGVE
Sbjct: 236 GKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID-CAPSA 448
RS+ +D++++ +++ + T ED +LL Q K+ I+++NK D A
Sbjct: 296 RSKRAITESDLVLLLINSSEELTEEDQKLLELTQDKKR--------IVILNKADQVAKIT 347
Query: 449 SNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ K+ +S + T +V Q + LE AI + + NQRQ + L
Sbjct: 348 KKDIQKITDS---PIVTISVLKKQNMTGLEEAIKSLFLQGIADSKSEVMVTNQRQNDLLR 404
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K++L+ +I + +PLD IDL++A +LG+I+G+ +E+++ +F KFC+GK
Sbjct: 405 KAKQSLIEAIEAINDNMPLDLVQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461
>gi|253681274|ref|ZP_04862072.1| tRNA modification GTPase TrmE [Clostridium botulinum D str. 1873]
gi|416348339|ref|ZP_11680291.1| tRNA modification GTPase TrmE [Clostridium botulinum C str.
Stockholm]
gi|253562512|gb|EES91963.1| tRNA modification GTPase TrmE [Clostridium botulinum D str. 1873]
gi|338196905|gb|EGO89082.1| tRNA modification GTPase TrmE [Clostridium botulinum C str.
Stockholm]
Length = 459
Score = 322 bits (824), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 184/476 (38%), Positives = 288/476 (60%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G V I+R+SG A+ IV ++F V K +K T++ +
Sbjct: 4 FDTIAAIATNLG--ESGVSIIRVSGEKALSIVSKIF--VGKNDRKLDD-----ITTYSMR 54
Query: 152 YGVVLDR-HGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D+ G +DEV+ M PRS+T EDVVE+ CHG + +R+L +++GA LA
Sbjct: 55 YGFIIDKVSGEKLDEVIVSYMKGPRSFTAEDVVEINCHGGVIVTKRILEEVIKSGARLAS 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI+AK+ +A +AL +G S ++ +R K +E++
Sbjct: 115 PGEFTKRAFLNGRIDLSQAEAVIDLINAKTELSAKSALEQSEGKLSKEISHLRDKLLEII 174
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IEA +D+ +D++ + + + + +++ L +AN K+L+ GL IVG+PNV
Sbjct: 175 AHIEATVDYPEDDLEEVTSEKGKEDVDKIITEIDKLLSSANEGKILREGLNTVIVGKPNV 234
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSS+LNA RAIVT+I GTTRDVIE +++ G+P+ ++DTAGIRETDDIVEKIGVE
Sbjct: 235 GKSSILNALLMETRAIVTDIPGTTRDVIEEYMSIEGIPIKIVDTAGIRETDDIVEKIGVE 294
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S L +D+ ++ + + +ED E+++ I+ K I+++NKID
Sbjct: 295 KSREKILNSDLTVLVLDSSRELDAEDKEIIDFIKDKK--------YIVLLNKIDLDTKLD 346
Query: 450 N-EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
NK+ + + + A TG+G+ + I ++ ++ + N R E L+R
Sbjct: 347 KGSLNKLNSDY--IIDISAKTGKGLDRFKEVIKELFFSGEVTSKD-VMITNTRHKEALIR 403
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K +L+ K ++E +D +ID+RDA LG+I+G+ + E+++ IF KFC+GK
Sbjct: 404 AKNSLIAGKEALENTFAIDLASIDIRDAWKNLGEINGDTVEEDMIDKIFSKFCLGK 459
>gi|257888103|ref|ZP_05667756.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,141,733]
gi|257896278|ref|ZP_05675931.1| tRNA modification GTPase mnmE [Enterococcus faecium Com12]
gi|293379359|ref|ZP_06625503.1| tRNA modification GTPase TrmE [Enterococcus faecium PC4.1]
gi|431036305|ref|ZP_19492075.1| tRNA modification GTPase mnmE [Enterococcus faecium E1590]
gi|431758026|ref|ZP_19546655.1| tRNA modification GTPase mnmE [Enterococcus faecium E3083]
gi|431763292|ref|ZP_19551845.1| tRNA modification GTPase mnmE [Enterococcus faecium E3548]
gi|257824157|gb|EEV51089.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,141,733]
gi|257832843|gb|EEV59264.1| tRNA modification GTPase mnmE [Enterococcus faecium Com12]
gi|292641882|gb|EFF60048.1| tRNA modification GTPase TrmE [Enterococcus faecium PC4.1]
gi|430562845|gb|ELB02076.1| tRNA modification GTPase mnmE [Enterococcus faecium E1590]
gi|430618531|gb|ELB55378.1| tRNA modification GTPase mnmE [Enterococcus faecium E3083]
gi|430622986|gb|ELB59696.1| tRNA modification GTPase mnmE [Enterococcus faecium E3548]
Length = 465
Score = 322 bits (824), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 193/483 (39%), Positives = 287/483 (59%), Gaps = 35/483 (7%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT--- 146
F TIAAI T PPG A+ IVRLSG AV + +V+ SG+ R +
Sbjct: 8 FDTIAAIST----PPGEGAISIVRLSGDQAVQLADKVYH-----------SGNKRLSEVP 52
Query: 147 SHVVEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAG 205
SH + YG ++D + +VDEV+ M AP+++TREDVVE+ CHG V + ++L+ L G
Sbjct: 53 SHTIHYGHIVDPKSDQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLREG 112
Query: 206 ATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAK 265
A LA+PGEFT RAFLNGR+DLSQAE V LI AK+ A AL + G S+L+ S+R +
Sbjct: 113 ARLAEPGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQE 172
Query: 266 CIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
+E L ++E +D+ D++ L L+++K + Q ++ L T+ K+L+ GL AI
Sbjct: 173 ILETLAQVEVNIDYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAI 232
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383
+GRPNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+V
Sbjct: 233 IGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVV 292
Query: 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443
E+IGVERS AD+I++ ++ + T+ED +LL + K+ I+++NK D
Sbjct: 293 ERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLEATKGLKR--------IILLNKTD 344
Query: 444 CAPSASNE-WNKVGNSFNDHVFTCAVT-GQGIQDLETAIMKIVGLHQIPAGGRRWAVNQR 501
E NK+ N+ VF+ +V G+ LE+AI + + + N R
Sbjct: 345 LPAQLEQEKLNKLIE--NEPVFSISVAKNDGLDHLESAISDLFFSGETGERDATYVSNTR 402
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
L + +L + + I+ +P+D ID+ LG++ G+ + +E+++ +F +FC
Sbjct: 403 HIALLEKASLSLEEVIAGIDAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFC 462
Query: 562 IGK 564
+GK
Sbjct: 463 LGK 465
>gi|347751709|ref|YP_004859274.1| tRNA modification GTPase TrmE [Bacillus coagulans 36D1]
gi|347584227|gb|AEP00494.1| tRNA modification GTPase TrmE [Bacillus coagulans 36D1]
Length = 461
Score = 322 bits (824), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 190/476 (39%), Positives = 278/476 (58%), Gaps = 20/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T +G GA+ IVRLSG A+ I R+F V KK SH +
Sbjct: 3 MDTIAAISTPMG--EGAISIVRLSGENAIAIANRLFAGVGGKKLVDV-------PSHTIH 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+E + M AP+++TREDVVE+ CHG V + RVL+ L+ GA LA+
Sbjct: 54 YGKIVDPDTGETVEEAMVSVMKAPKTFTREDVVEINCHGGLVAVNRVLQLVLKNGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S LV +R + +E++
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDKAMNVAIGQMEGRLSKLVKKLRQEILEVV 173
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
IE +D+ D++ + ++ +K + ++E L TA+ K+L+ GL AI+GRPN
Sbjct: 174 AHIEVNIDYPEYDDVEEMTHRMLKEKAQYIKNEIEKLLRTAHQGKILREGLSTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 234 VGKSSLLNSLVQENKAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDIVERIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD+I++ +++ + + ED L ++ +I+++NK D
Sbjct: 294 ERSRKALKEADLILLVINSSEPLSPEDEALFEAVE--------GMDVIVILNKWDLPHQV 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + + T VT +G++ LE AI + Q+ G + N R L +
Sbjct: 346 EMESVRELAQGAKILTTSLVTEEGMEKLEDAIAAMYFEGQMETGDLTYVSNSRHIALLNQ 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
EA+ +++ I+ P+D IDL LG+I G+ + E +L+ +F +FC+GK
Sbjct: 406 ALEAIQDVQNGIQSNTPIDIIQIDLTRTWDLLGEIIGDTVQESLLNQLFSQFCLGK 461
>gi|205371919|ref|ZP_03224739.1| tRNA modification GTPase TrmE [Bacillus coahuilensis m4-4]
Length = 461
Score = 322 bits (824), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 191/478 (39%), Positives = 278/478 (58%), Gaps = 24/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG AV+I RVF+ + K SH +
Sbjct: 3 FDTIAAISTPMG--EGAIAIVRLSGDQAVEIADRVFRKPNSQPLKDQ-------ISHTIH 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG +++ V++EV+ M PR++TREDVVE+ CHG V + +VL+ + GA LA+
Sbjct: 54 YGNIIEPETEQVIEEVMVSLMRGPRTFTREDVVEINCHGGIVSVNKVLQLVVRQGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G SSL+ +R + +E L
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSSLIRKLRQEILETL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + ++++K + ++E L T+ K+L+ GL I+GRPN
Sbjct: 174 AHVEVNIDYPEYDDVEEMTHRVLLEKSSKVKHEIELLLRTSEQGKILREGLSTVIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 234 VGKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
E+S V AD++++ ++ D +T ED L ++ +I+++NK D P
Sbjct: 294 EKSRQVLKEADLLLLVLNHGDEFTEEDENLFKAVE--------GMDVIVIVNKTDL-PQV 344
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
N KV +H V T QGI +LE AI + I +G + N R L
Sbjct: 345 IN-MEKVRELSKNHRLVTTSLKEEQGIDELEEAIASLFFSGSIESGDLTYVSNSRHIALL 403
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K+A+ +E P+D IDL + LG+I G+ + E ++ +F +FC+GK
Sbjct: 404 TQAKQAIEEAIDGVEMGTPIDIVQIDLTRSWELLGEIIGDSVHESLIDQLFSQFCLGK 461
>gi|406669710|ref|ZP_11076974.1| tRNA modification GTPase TrmE [Facklamia ignava CCUG 37419]
gi|405582523|gb|EKB56519.1| tRNA modification GTPase TrmE [Facklamia ignava CCUG 37419]
Length = 459
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 184/475 (38%), Positives = 283/475 (59%), Gaps = 25/475 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++G A+GIVRLSG +V+I R+FK G+ SH + YG
Sbjct: 6 TIAAIATALG--ESAIGIVRLSGSESVEIANRIFK----------GTNLIEVPSHTIHYG 53
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+++ + V+DEV+ M APRSYT ED VE+ CHG V ++RVL L GA +AQPG
Sbjct: 54 HIINPKIEQVIDEVMVSVMRAPRSYTTEDSVEINCHGGVVAIQRVLEMVLANGARIAQPG 113
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQAE V LI +++ A DA+++ + G + +R + ++ L +
Sbjct: 114 EFTQRAFLNGRIDLSQAEAVMDLIQSRTSKAMDASISQLNGSLRRKIQQLRHEMLQTLAQ 173
Query: 273 IEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+E +D+ D++ L+L + ++ Q +E L+ + ++ + G+Q AI+GRPNVG
Sbjct: 174 VEVTIDYPEYDDVEELSLQEMNQTALSVKQQIEQILQQSQQGRIFREGIQTAIIGRPNVG 233
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSL+N + ++AIVT+I GTTRD IE V + GVP+ L+DTAGIRET+++VE+IGVE+
Sbjct: 234 KSSLMNRLTGYDKAIVTDIEGTTRDTIEEYVNIRGVPLHLIDTAGIRETEEVVEQIGVEK 293
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S AV AD II+ ++A + D ELL+ + P ++++NK D P +
Sbjct: 294 SRAVMEQADFIILMLNASEALNEMDRELLDLTK--------DYPRVILLNKQDLTPQVTV 345
Query: 451 EWNKVGNSFNDHVFTCA-VTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
E + + + +D + T + +T GI LE I + + + + +N R E L +
Sbjct: 346 E-DILDYAASDEIITTSLLTEAGIDQLEERIEEYFFQGDLKSRDVNYLLNTRHTELLRQA 404
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL + +S E +P+D ID A LG+I GE++ +E+L+ +F +FC+GK
Sbjct: 405 SAALDEVVASTEMGIPVDLIQIDYTHAWDLLGEIIGENVQDELLNKLFSQFCLGK 459
>gi|311032250|ref|ZP_07710340.1| tRNA modification GTPase TrmE [Bacillus sp. m3-13]
Length = 462
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 188/478 (39%), Positives = 278/478 (58%), Gaps = 24/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG A I+ +F KK K S H +
Sbjct: 4 FDTIAAISTPMG--EGAIAIVRLSGEEAFRIIDEIFVTPSSKKMKDVAS-------HTIH 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + +++EV+ M P+++TREDVVE+ CHG V + ++L+ L GA LA+
Sbjct: 55 YGHIVDPKTDKIIEEVMVSVMRGPKTFTREDVVEINCHGGLVSVNKLLQLVLSRGARLAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL ++G S L+ +R + +E L
Sbjct: 115 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMEGRLSKLIQKLRQEILETL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + L+++K + +++E L+T+ K+L+ GL I+GRPN
Sbjct: 175 AHVEVNIDYPEYDDVEEMTHQLLLEKSTYVKEELEKLLQTSQQGKILREGLSTVIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ +AIVT+I GTTRDVIE V+V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 235 VGKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVSVRGVPLRLVDTAGIRETEDIVERIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ D T ED +L ++ +I+++NK D
Sbjct: 295 ERSREVLKKADLILLVLNNNDDLTMEDKQLFEAVK--------GMDVIVIVNKTDLPTKI 346
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ +V N H + T QGI +LE AI + + AG + N R +
Sbjct: 347 --DIGQVKELANHHTVISTSLKEEQGIDELEEAISSMFFQGDLEAGDMTYVSNSRHIGLI 404
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++AL +E +P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 405 TQAQQALEDAIVGMESGVPIDIVQIDLTRTWEILGEIIGDAVHESLIDQLFSQFCLGK 462
>gi|297531687|ref|YP_003672962.1| tRNA modification GTPase TrmE [Geobacillus sp. C56-T3]
gi|297254939|gb|ADI28385.1| tRNA modification GTPase TrmE [Geobacillus sp. C56-T3]
Length = 462
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 203/479 (42%), Positives = 280/479 (58%), Gaps = 26/479 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG AV+I R+F+ K+ K SH +
Sbjct: 4 FDTIAAISTPMG--EGAIAIVRLSGDQAVEIADRLFRSPSGKRLKDV-------PSHTIH 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G VV+EV+ M AP+++TREDVVE+ CHG V + RVL+ L GA LA+
Sbjct: 55 YGHIIDPKSGRVVEEVMVSVMRAPKTFTREDVVEINCHGGFVSVNRVLQLVLANGARLAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL ++G S L+ +R +E L
Sbjct: 115 PGEFTKRAFLNGRIDLSQAEAVIDLIRAKTDRAMNVALQQMEGRLSKLIRELRQTILETL 174
Query: 271 TEIEARLDF---DD--EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVG 325
+E +D+ DD EM P L+ +K + +E L TA K+L+ GL I+G
Sbjct: 175 AHVEVNIDYPEYDDVEEMTP---RLLREKAEYVRGQIEKLLSTAAQGKILREGLATVIIG 231
Query: 326 RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEK 385
RPNVGKSSLLNA + RAIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+D+VE+
Sbjct: 232 RPNVGKSSLLNALAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDVVER 291
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445
IGVERS+ + AD+I++ ++ + T ED L I+ I+++NK D
Sbjct: 292 IGVERSQQMLKRADLILLVLNYHEPLTEEDERLFAMIE--------GMDAIVIVNKTDLP 343
Query: 446 PSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
E K + V T + QGI +LE AI + ++ AG + N R
Sbjct: 344 RRIDMERVKELAAGRPVVATSLLHEQGIDELEKAIADLFFGGELEAGDLTYVSNSRHIAL 403
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + K A+ + I+ +P+D IDLR A LG+I G+ + E ++ +F +FC+GK
Sbjct: 404 LEQAKTAIEDALAGIDAGMPVDLVQIDLRRAWELLGEIIGDTVHESLIDQLFAQFCLGK 462
>gi|433447851|ref|ZP_20411227.1| tRNA modification GTPase TrmE [Anoxybacillus flavithermus
TNO-09.006]
gi|431999692|gb|ELK20608.1| tRNA modification GTPase TrmE [Anoxybacillus flavithermus
TNO-09.006]
Length = 461
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 196/476 (41%), Positives = 273/476 (57%), Gaps = 20/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG A+ IV ++F V KK K SH +
Sbjct: 3 FDTIAAISTPMG--EGAIAIVRLSGDEAIKIVDQLFVGVGGKKLKDV-------PSHTIH 53
Query: 152 YG-VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG +V ++EV+ M AP+++TREDVVE+ CHG V + RVL+ L GA LAQ
Sbjct: 54 YGHIVHPETKETIEEVMVTVMKAPKTFTREDVVEINCHGGLVSVNRVLQLVLAYGARLAQ 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A AL ++G S L+ +R +E L
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVIDLIRAKTDRAMAVALNQMEGRLSKLIRRLRQTILETL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + L+++K + ++E L+TA K+L+ GL I+GRPN
Sbjct: 174 AHVEVNIDYPEYDDVEEMTHRLLLEKATEVKNEIERLLQTAQQGKVLRDGLATVIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + RAIVT+I GTTRDVIE V V GVP+ LLDTAGIRET+DIVE+IGV
Sbjct: 234 VGKSSLLNSLAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLLDTAGIRETEDIVERIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ + T ED +L ++ I+V+NK D
Sbjct: 294 ERSRKVLKEADLILLVLNYNEPLTVEDEQLFEAVK--------GMDAIVVVNKTDLPKRI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ K + T + +GI+ LE AI + + A + N R L +
Sbjct: 346 DMDRVKQLAQGLPIITTSLLEERGIEQLEEAIASLFFSGDVEARDLTYVSNSRHIALLTQ 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+A+ IE +P+D IDL A LG+I G+ + E ++ +F +FC+GK
Sbjct: 406 AKKAIEEAIHGIEAGMPIDIVQIDLTRAWELLGEIVGDTVHESLIDQLFAQFCLGK 461
>gi|319789803|ref|YP_004151436.1| tRNA modification GTPase TrmE [Thermovibrio ammonificans HB-1]
gi|317114305|gb|ADU96795.1| tRNA modification GTPase TrmE [Thermovibrio ammonificans HB-1]
Length = 469
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 199/479 (41%), Positives = 286/479 (59%), Gaps = 28/479 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T IG GA+GIVR+SG A+ I+ R+F+ G + YG
Sbjct: 11 TIAAISTPIG--KGAIGIVRISGKDALTILRRLFRT-------KGGKEKLEFEDRKMYYG 61
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+V+DR G +DEVLAV M AP+++T EDVVEL HG V +R+VLR L GA LA+PGE
Sbjct: 62 LVVDRFGEPIDEVLAVYMKAPKTFTGEDVVELHVHGGIVVVRKVLREVLACGARLAKPGE 121
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT+RAF++G++DL QAE + +LI A S +A AL ++G S + ++ + +EL I
Sbjct: 122 FTMRAFIHGKIDLVQAEAINQLIEATSELSAKVALEQLEGKLSKRIKELQTRLLELKAVI 181
Query: 274 EARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
EA +DF D+E+ + + + + + + ++E ++T + ++ G+++AIVGRPNVGKS
Sbjct: 182 EAAVDFPDEEVEIIESHRIKEHLRGLIDELEKLIQTYREGRYIREGIKVAIVGRPNVGKS 241
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNA + ERAIVTEI GTTRDVIE +VT G+PV LLDTAGIRE+ D+VE+IG+E+S
Sbjct: 242 SLLNAILQEERAIVTEIPGTTRDVIEETVTFKGLPVRLLDTAGIRESADVVERIGIEKSL 301
Query: 393 AVALGADVIIMTVSAVDGWTSED---SELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
ADV++ + +G T ED + LLNR +I VINK D A +
Sbjct: 302 KSLKEADVVLFVLDGSEGLTEEDLKIASLLNR----------KDNVIAVINKADLALKLT 351
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIM--KIVGLHQIPAGGRRWAVNQRQCEQLM 507
E K V A G+GI +L +A+M ++ + G ++R E L
Sbjct: 352 CEQLKETLGVGRCVIISAKEGKGIDELASAMMELLLLEPESLLGGDEVLITSERHRELLE 411
Query: 508 RTKEALVRLKSSIE--EELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
R K +L + +S+ E P +F ++D+ DA ALG+I GE +E++ IF +FCIGK
Sbjct: 412 RAKTSLEKALNSLNLGYESP-EFLSMDIDDALKALGEIVGEVTTEDMFDIIFSRFCIGK 469
>gi|212640677|ref|YP_002317197.1| tRNA modification GTPase TrmE [Anoxybacillus flavithermus WK1]
gi|212562157|gb|ACJ35212.1| tRNA modification GTPase, TrmE [Anoxybacillus flavithermus WK1]
Length = 464
Score = 321 bits (823), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 195/476 (40%), Positives = 273/476 (57%), Gaps = 20/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG A+ IV ++F V KK K SH +
Sbjct: 6 FDTIAAISTPMG--EGAIAIVRLSGDEAIKIVDQLFVGVGGKKLKDV-------PSHTIH 56
Query: 152 YG-VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG +V ++EV+ M AP+++TREDVVE+ CHG V + RVL+ L GA LAQ
Sbjct: 57 YGHIVHPETKETIEEVMVTVMKAPKTFTREDVVEINCHGGLVSVNRVLQLVLAYGARLAQ 116
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A AL ++G S L+ +R +E L
Sbjct: 117 PGEFTKRAFLNGRIDLSQAEAVIDLIRAKTDRAMAVALNQMEGRLSKLIRRLRQTILETL 176
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + L+++K + ++E L+TA K+L+ GL I+GRPN
Sbjct: 177 AHVEVNIDYPEYDDVEEMTHRLLLEKATEVKNEIERLLQTAQQGKVLRDGLATVIIGRPN 236
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + RAIVT+I GTTRDVIE V V GVP+ LLDTAGIRET+DIVE+IGV
Sbjct: 237 VGKSSLLNSLAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLLDTAGIRETEDIVERIGV 296
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ + T ED +L ++ +I+++NK D
Sbjct: 297 ERSRKVLKEADLILLVLNYNEPLTVEDEQLFEAVK--------GMDVIVIVNKTDLPKQI 348
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ K + T + +GI LE AI + + A + N R L +
Sbjct: 349 DMDRVKQLAQGLPIITTSLLEDRGIDQLEEAIASLFFSGDVEARDLTYVSNSRHIALLTQ 408
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+A+ IE +P+D IDL A LG+I G+ + E ++ +F +FC+GK
Sbjct: 409 AKKAIEEAIHGIEAGMPIDIVQIDLTRAWELLGEIVGDTVHESLIDQLFAQFCLGK 464
>gi|423399679|ref|ZP_17376852.1| tRNA modification GTPase mnmE [Bacillus cereus BAG2X1-2]
gi|423479631|ref|ZP_17456346.1| tRNA modification GTPase mnmE [Bacillus cereus BAG6X1-1]
gi|401657800|gb|EJS75305.1| tRNA modification GTPase mnmE [Bacillus cereus BAG2X1-2]
gi|402425226|gb|EJV57381.1| tRNA modification GTPase mnmE [Bacillus cereus BAG6X1-1]
Length = 458
Score = 321 bits (823), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 185/476 (38%), Positives = 280/476 (58%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ V R+FK G SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKVNRIFK----------GKDLTEVPSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ + APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSILRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++ LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRTEIAKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T ED +L +Q I+++NK D +
Sbjct: 291 ERSKEMMSQADLVLVVVNYSEALTHEDEDLFRAVQGK--------DFIIIVNKTDLSQVI 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + N + T + QGI +LE AI + I + + N R L +
Sbjct: 343 DMERVTELAAGNRIITTSLIEEQGIDELEKAIADLFFEGTIDSADVTYVSNARHIGLLTQ 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 403 AGKTIGDAIEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|335427792|ref|ZP_08554712.1| tRNA modification GTPase TrmE [Haloplasma contractile SSD-17B]
gi|335429231|ref|ZP_08556133.1| tRNA modification GTPase TrmE [Haloplasma contractile SSD-17B]
gi|334890311|gb|EGM28583.1| tRNA modification GTPase TrmE [Haloplasma contractile SSD-17B]
gi|334893718|gb|EGM31927.1| tRNA modification GTPase TrmE [Haloplasma contractile SSD-17B]
Length = 452
Score = 321 bits (823), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 180/475 (37%), Positives = 284/475 (59%), Gaps = 31/475 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI AI T++G GA+ IVRLSGP +++I ++FK G SH + YG
Sbjct: 5 TIVAISTALG--EGAISIVRLSGPDSIEIANKLFK----------GKDLMDVKSHTIHYG 52
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+ + +++DEV+ + +PR+YT+ED++E+ CHG +VL L GA LA+PG
Sbjct: 53 HIYEPETDSILDEVMLTVLKSPRTYTKEDIIEINCHGGIYITNKVLELTLTMGARLAEPG 112
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DL+QAE+V LI+AK+ + A+ G+ G S LVT +R + ++++
Sbjct: 113 EFTKRAFLNGRIDLAQAESVMDLINAKTEESLTVAMKGVDGRVSKLVTHLREQVLQVIAN 172
Query: 273 IEARLDF---DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IE +D+ DD + N L+ I+ + ++ LE A K+++ G++ AI+GRPNV
Sbjct: 173 IEVNIDYPEYDDAIEMSN-ELLKPLINNVILELNRILEVAKTGKIIREGIKTAIIGRPNV 231
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + ERAIVTEIAGTTRDVIE + + G+ + L+DTAGIRET+D+VE IGVE
Sbjct: 232 GKSSLLNKLMREERAIVTEIAGTTRDVIEGFINIGGIALKLVDTAGIRETEDLVEAIGVE 291
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ A+++++ ++ + T ED LL+ + ++ I++INK D
Sbjct: 292 RSKQAISEAELVLLVLNNSEPLTEEDRLLLDLTKDKQR--------IILINKSDLESKID 343
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+ N+ + T V GI+D+E + ++ L +I + N R +L
Sbjct: 344 K------SKLNNFIETSMVEDIGIEDIEEKVKQLFDLGEIKTKDMTYISNTRHIAKLRIA 397
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+E+L +IE E+P+D +D+++A +ALG+I G+++ + +L +F KFC+GK
Sbjct: 398 RESLENASRAIEMEVPVDMVEVDVKEAWIALGEILGKEVGDSLLDELFSKFCLGK 452
>gi|431753201|ref|ZP_19541878.1| tRNA modification GTPase mnmE [Enterococcus faecium E2620]
gi|430612706|gb|ELB49741.1| tRNA modification GTPase mnmE [Enterococcus faecium E2620]
Length = 465
Score = 321 bits (823), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 193/483 (39%), Positives = 287/483 (59%), Gaps = 35/483 (7%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT--- 146
F TIAAI T PPG A+ IVRLSG AV + +V+ SG+ R +
Sbjct: 8 FDTIAAIST----PPGEGAISIVRLSGDQAVQLADKVYH-----------SGNKRLSEVP 52
Query: 147 SHVVEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAG 205
SH + YG ++D + +VDEV+ M AP+++TREDVVE+ CHG V + ++L+ L G
Sbjct: 53 SHTIHYGHIVDPKSDQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLREG 112
Query: 206 ATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAK 265
A LA+PGEFT RAFLNGR+DLSQAE V LI AK+ A AL + G S+L+ S+R +
Sbjct: 113 ARLAEPGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQE 172
Query: 266 CIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
+E L ++E +D+ D++ L L+++K + Q ++ L T+ K+L+ GL AI
Sbjct: 173 ILETLAQVEVNIDYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAI 232
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383
+GRPNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+V
Sbjct: 233 IGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVV 292
Query: 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443
E+IGVERS AD+I++ ++ + T+ED +LL + K+ I+++NK D
Sbjct: 293 ERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLEATKGLKR--------IILLNKTD 344
Query: 444 CAPSASNE-WNKVGNSFNDHVFTCAVT-GQGIQDLETAIMKIVGLHQIPAGGRRWAVNQR 501
E NK+ N+ VF+ +V G+ LE+AI + + + N R
Sbjct: 345 LPAQLEQEKLNKLIE--NEPVFSISVAKNDGLDRLESAISDLFFSGETGERDATYVSNTR 402
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
L + +L + + I+ +P+D ID+ LG++ G+ + +E+++ +F +FC
Sbjct: 403 HIALLEKASLSLEEVIAGIDAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFC 462
Query: 562 IGK 564
+GK
Sbjct: 463 LGK 465
>gi|229035142|ref|ZP_04189088.1| tRNA modification GTPase mnmE [Bacillus cereus AH1271]
gi|228728208|gb|EEL79238.1| tRNA modification GTPase mnmE [Bacillus cereus AH1271]
Length = 458
Score = 321 bits (823), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 185/476 (38%), Positives = 281/476 (59%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ V R+FK G SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKVNRIFK----------GKDLTEVPSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ + APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSILRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++ LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L +Q I+++NK D +
Sbjct: 291 ERSKEMMSQADLVLVVVNYSEALTNEDEDLFRAVQGK--------DFIVIVNKTDLPQTI 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + N + T + QGI +LE AI + I + + N R L +
Sbjct: 343 DMERVTELAAGNRVITTSLIEEQGIDELEKAIADLFFEGAIDSADVTYVSNARHIGLLTQ 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 403 AGKTIGDAIEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|329919799|ref|ZP_08276750.1| tRNA modification GTPase TrmE [Lactobacillus iners SPIN 1401G]
gi|328937146|gb|EGG33574.1| tRNA modification GTPase TrmE [Lactobacillus iners SPIN 1401G]
Length = 461
Score = 321 bits (823), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 182/477 (38%), Positives = 289/477 (60%), Gaps = 27/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
+ TIAAI T IG G + I+R+SG A++IV ++F+ G+ + SH +
Sbjct: 8 YDTIAAIATPIG--EGGISIIRVSGENALEIVNKIFR----------GANLNKVASHTIH 55
Query: 152 YGVVLDR-HGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + +VVDEVL MLAP+++TRE+ VE+ CHG + +++L+ L+ GA +A
Sbjct: 56 YGHIIDYDNKDVVDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTQKILQLILDNGARMAT 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE++ +I AK+ A A+ ++GG + +R + + +
Sbjct: 116 PGEFTKRAFINGRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTM 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
E +D+ + +M + + DK + ++++ L TA K+++SGL AIVGRPNV
Sbjct: 176 AHEEVNIDYPEYDMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN SK E+AIVT IAGTTRD +E V++ G+ + L+DTAGIR+TDDIVEKIGVE
Sbjct: 236 GKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID-CAPSA 448
RS+ +D++++ +++ + T ED +LL Q K+ I+++NK D A
Sbjct: 296 RSKRAITESDLVLLLINSSEELTEEDQKLLELTQDKKR--------IVILNKADQVAKIT 347
Query: 449 SNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ K+ +S + T +V Q + LE AI + + NQRQ + L
Sbjct: 348 KKDIQKITDS---PIVTISVLKKQNMIGLEEAIKSLFLQGITDSKSEVMVTNQRQNDLLR 404
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K +L+ +I + +PLD IDL++A +LG+I+G+ +E+++ +F KFC+GK
Sbjct: 405 KAKRSLIEAIEAINDNMPLDLVQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461
>gi|375010678|ref|YP_004984311.1| tRNA modification GTPase mnmE [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359289527|gb|AEV21211.1| tRNA modification GTPase mnmE [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 462
Score = 321 bits (822), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 203/479 (42%), Positives = 280/479 (58%), Gaps = 26/479 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG AV+I R+F+ K+ K SH +
Sbjct: 4 FDTIAAISTPMG--EGAIAIVRLSGDQAVEIADRLFRSPSGKRLKDV-------PSHTIH 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G VV+EV+ M AP+++TREDVVE+ CHG V + RVL+ L GA LA+
Sbjct: 55 YGHIIDPKSGRVVEEVMVSVMRAPKTFTREDVVEINCHGGFVSVNRVLQLVLANGARLAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL ++G S L+ +R +E L
Sbjct: 115 PGEFTKRAFLNGRIDLSQAEAVIDLIRAKTDRAMNVALQQMEGRLSKLIRELRQTILETL 174
Query: 271 TEIEARLDF---DD--EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVG 325
+E +D+ DD EM P L+ +K + +E L TA K+L+ GL I+G
Sbjct: 175 AHVEVNIDYPEYDDVEEMTP---RLLREKAEYVRGQIEKLLSTAAQGKILREGLATVIIG 231
Query: 326 RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEK 385
RPNVGKSSLLNA + RAIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+D+VE+
Sbjct: 232 RPNVGKSSLLNALAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDVVER 291
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445
IGVERS+ + AD+I++ ++ + T ED L I+ I+++NK D
Sbjct: 292 IGVERSQQMLKRADLILLVLNYHEPLTEEDERLFAMIE--------GMDAIVIVNKTDLP 343
Query: 446 PSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
E K + V T + QGI +LE AI + ++ AG + N R
Sbjct: 344 RRIDMERVKELAAGRPVVGTSLLHEQGIDELEKAIADLFFGGELEAGDLTYVSNSRHIAL 403
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + K A+ + I+ +P+D IDLR A LG+I G+ + E ++ +F +FC+GK
Sbjct: 404 LEQAKTAIEDALAGIDAGMPIDLVQIDLRRAWELLGEIIGDTVHESLIDQLFAQFCLGK 462
>gi|312871302|ref|ZP_07731400.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 3008A-a]
gi|312874855|ref|ZP_07734874.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2053A-b]
gi|311089600|gb|EFQ48025.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2053A-b]
gi|311093316|gb|EFQ51662.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 3008A-a]
Length = 461
Score = 321 bits (822), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 181/477 (37%), Positives = 290/477 (60%), Gaps = 27/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
+ TIAAI T IG G + I+R+SG A++IV ++F+ G+ + SH +
Sbjct: 8 YDTIAAIATPIG--EGGISIIRVSGENALEIVNKIFR----------GANLNKVASHTIH 55
Query: 152 YGVVLDR-HGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + +VVDEVL MLAP+++TRE+ VE+ CHG + +++L+ L+ GA +A
Sbjct: 56 YGHIIDYANKDVVDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTQKILQLILDNGARMAT 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE++ +I AK+ A A+ ++GG + +R + + +
Sbjct: 116 PGEFTKRAFINGRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTM 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
E +D+ + +M + + DK + ++++ L TA K+++SGL AIVGRPNV
Sbjct: 176 AHEEVNIDYPEYDMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN SK E+AIVT IAGTTRD +E V++ G+ + L+DTAGIR+TDDIVEKIGVE
Sbjct: 236 GKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID-CAPSA 448
RS+ +D++++ +++ + T ED +LL Q K+ I+++NK D A
Sbjct: 296 RSKRAITESDLVLLLINSSEELTEEDQKLLELTQDKKR--------IIILNKADQVAKIT 347
Query: 449 SNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ K+ +S + T +V + + LE AI + + NQRQ + L
Sbjct: 348 KKDIQKITDS---PIVTISVLKKKNMIGLEEAIKSLFLQGITDSKSEVMVTNQRQNDLLR 404
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K++L+ +I + +PLD IDL++A +LG+I+G+ +E+++ +F KFC+GK
Sbjct: 405 KAKQSLIEAIEAINDNMPLDLVQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461
>gi|431437991|ref|ZP_19513154.1| tRNA modification GTPase mnmE [Enterococcus faecium E1630]
gi|431760020|ref|ZP_19548624.1| tRNA modification GTPase mnmE [Enterococcus faecium E3346]
gi|430586826|gb|ELB25068.1| tRNA modification GTPase mnmE [Enterococcus faecium E1630]
gi|430625289|gb|ELB61929.1| tRNA modification GTPase mnmE [Enterococcus faecium E3346]
Length = 465
Score = 321 bits (822), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 194/483 (40%), Positives = 286/483 (59%), Gaps = 35/483 (7%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT--- 146
F TIAAI T PPG A+ IVRLSG AV + +V++ SG+ R +
Sbjct: 8 FDTIAAIST----PPGEGAISIVRLSGDQAVQLADKVYQ-----------SGNKRLSEVP 52
Query: 147 SHVVEYGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAG 205
SH + YG + D N +VDEV+ M AP+++TREDVVE+ CHG V + ++L+ L G
Sbjct: 53 SHTIHYGHIADPKSNQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLREG 112
Query: 206 ATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAK 265
A LA+PGEFT RAFLNGR+DLSQAE V LI AK+ A AL + G S+L+ S+R +
Sbjct: 113 ARLAEPGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQE 172
Query: 266 CIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
+E L ++E +D+ D++ L L+++K + Q ++ L T+ K+L+ GL AI
Sbjct: 173 ILETLAQVEVNIDYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAI 232
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383
+GRPNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+V
Sbjct: 233 IGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVV 292
Query: 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443
E+IGVERS AD+I++ ++ + T+ED +LL K+ I+++NK D
Sbjct: 293 ERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLEATSGLKR--------IILLNKTD 344
Query: 444 CAPSASNE-WNKVGNSFNDHVFTCAVT-GQGIQDLETAIMKIVGLHQIPAGGRRWAVNQR 501
E NK+ N+ VF+ +V G+ LE+AI + + + N R
Sbjct: 345 LPAQLEQEKLNKLIE--NEPVFSISVAKNDGLDRLESAISDLFFSGETGERDATYVSNTR 402
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
L + +L + + I+ +P+D ID+ LG++ G+ + +E+++ +F +FC
Sbjct: 403 HIALLEKASLSLEEVIAGIDAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFC 462
Query: 562 IGK 564
+GK
Sbjct: 463 LGK 465
>gi|452974094|gb|EME73916.1| tRNA modification GTPase TrmE [Bacillus sonorensis L12]
Length = 462
Score = 321 bits (822), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 191/478 (39%), Positives = 281/478 (58%), Gaps = 24/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T +G GA+ IVRLSGP A+ I +V+K + K S SH +
Sbjct: 4 MDTIAAISTPMG--EGAIAIVRLSGPEALSIADKVYKGPRGKTLHSV-------ESHTIN 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D VV+EV+ + AP+++TRED+VE+ CHG V + +VL+ L GA LA+
Sbjct: 55 YGHIVDPETDKVVEEVMVSVLKAPKTFTREDIVEINCHGGIVTVNQVLQLVLRQGARLAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G SSL+ +RA+ +E L
Sbjct: 115 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSSLIKRLRAELLETL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
IE +D+ D++ + L+++K + +++E L T+ K+L+ G+ I+GRPN
Sbjct: 175 AHIEVNIDYPEYDDVEEMTHKLLIEKATKVKEEIEALLTTSEQGKILREGISTVIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 235 VGKSSLLNSLVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ + + ED +N ++ K +I+++NK D
Sbjct: 295 ERSRQVLKEADLILLVLNYSETLSEED---INLFEATK-----GMDLIVIVNKTDLEQKL 346
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ N+V N V T + +GI +LE AI + I +G + N R L
Sbjct: 347 --DLNRVQELANGRPVVTTSLLREEGIDELEEAIQSLFFTGAIESGDLTYVSNTRHISLL 404
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K A+ I+ ++P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 405 HEAKRAITDALEGIDNDVPIDMVQIDLTKCWEVLGEIIGDAVHESLIDQLFSQFCLGK 462
>gi|56422029|ref|YP_149347.1| tRNA modification GTPase TrmE [Geobacillus kaustophilus HTA426]
gi|261420902|ref|YP_003254584.1| tRNA modification GTPase TrmE [Geobacillus sp. Y412MC61]
gi|319768573|ref|YP_004134074.1| tRNA modification GTPase TrmE [Geobacillus sp. Y412MC52]
gi|448239766|ref|YP_007403824.1| putative tRNA modification GTPase [Geobacillus sp. GHH01]
gi|81346199|sp|Q5KU57.1|MNME_GEOKA RecName: Full=tRNA modification GTPase MnmE
gi|56381871|dbj|BAD77779.1| thiophen/furan oxidation protein [Geobacillus kaustophilus HTA426]
gi|261377359|gb|ACX80102.1| tRNA modification GTPase TrmE [Geobacillus sp. Y412MC61]
gi|317113439|gb|ADU95931.1| tRNA modification GTPase TrmE [Geobacillus sp. Y412MC52]
gi|445208608|gb|AGE24073.1| putative tRNA modification GTPase [Geobacillus sp. GHH01]
Length = 462
Score = 321 bits (822), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 203/479 (42%), Positives = 280/479 (58%), Gaps = 26/479 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG AV+I R+F+ K+ K SH +
Sbjct: 4 FDTIAAISTPMG--EGAIAIVRLSGDQAVEIADRLFRSPSGKRLKDV-------PSHTIH 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G VV+EV+ M AP+++TREDVVE+ CHG V + RVL+ L GA LA+
Sbjct: 55 YGHIIDPKSGRVVEEVMVSVMRAPKTFTREDVVEINCHGGFVSVNRVLQLVLANGARLAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL ++G S L+ +R +E L
Sbjct: 115 PGEFTKRAFLNGRIDLSQAEAVIDLIRAKTDRAMNVALQQMEGRLSKLIRELRQTILETL 174
Query: 271 TEIEARLDF---DD--EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVG 325
+E +D+ DD EM P L+ +K + +E L TA K+L+ GL I+G
Sbjct: 175 AHVEVNIDYPEYDDVEEMTP---RLLREKAEYVRGQIEKLLSTAAQGKILREGLATVIIG 231
Query: 326 RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEK 385
RPNVGKSSLLNA + RAIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+D+VE+
Sbjct: 232 RPNVGKSSLLNALAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDVVER 291
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445
IGVERS+ + AD+I++ ++ + T ED L I+ I+++NK D
Sbjct: 292 IGVERSQQMLKRADLILLVLNYHEPLTEEDERLFAMIE--------GMDAIVIVNKTDLP 343
Query: 446 PSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
E K + V T + QGI +LE AI + ++ AG + N R
Sbjct: 344 RRIDMERVKELAAGRPVVGTSLLHEQGIDELEKAIADLFFGGELEAGDLTYVSNSRHIAL 403
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + K A+ + I+ +P+D IDLR A LG+I G+ + E ++ +F +FC+GK
Sbjct: 404 LEQAKTAIEDALAGIDAGMPVDLVQIDLRRAWELLGEIIGDTVHESLIDQLFAQFCLGK 462
>gi|261206911|ref|ZP_05921600.1| tRNA modification GTPase mnmE [Enterococcus faecium TC 6]
gi|289567290|ref|ZP_06447669.1| tRNA modification GTPase TrmE [Enterococcus faecium D344SRF]
gi|294616665|ref|ZP_06696436.1| tRNA modification GTPase TrmE [Enterococcus faecium E1636]
gi|430820776|ref|ZP_19439398.1| tRNA modification GTPase mnmE [Enterococcus faecium E0045]
gi|430826511|ref|ZP_19444693.1| tRNA modification GTPase mnmE [Enterococcus faecium E0164]
gi|430828702|ref|ZP_19446819.1| tRNA modification GTPase mnmE [Enterococcus faecium E0269]
gi|430836313|ref|ZP_19454294.1| tRNA modification GTPase mnmE [Enterococcus faecium E0680]
gi|430850637|ref|ZP_19468394.1| tRNA modification GTPase mnmE [Enterococcus faecium E1185]
gi|430888499|ref|ZP_19484372.1| tRNA modification GTPase mnmE [Enterococcus faecium E1575]
gi|431213206|ref|ZP_19501071.1| tRNA modification GTPase mnmE [Enterococcus faecium E1620]
gi|431380568|ref|ZP_19510949.1| tRNA modification GTPase mnmE [Enterococcus faecium E1627]
gi|431506952|ref|ZP_19515778.1| tRNA modification GTPase mnmE [Enterococcus faecium E1634]
gi|431747303|ref|ZP_19536101.1| tRNA modification GTPase mnmE [Enterococcus faecium E2134]
gi|431764837|ref|ZP_19553365.1| tRNA modification GTPase mnmE [Enterococcus faecium E4215]
gi|260078539|gb|EEW66241.1| tRNA modification GTPase mnmE [Enterococcus faecium TC 6]
gi|289160909|gb|EFD08830.1| tRNA modification GTPase TrmE [Enterococcus faecium D344SRF]
gi|291590485|gb|EFF22223.1| tRNA modification GTPase TrmE [Enterococcus faecium E1636]
gi|430439162|gb|ELA49534.1| tRNA modification GTPase mnmE [Enterococcus faecium E0045]
gi|430445024|gb|ELA54814.1| tRNA modification GTPase mnmE [Enterococcus faecium E0164]
gi|430483242|gb|ELA60336.1| tRNA modification GTPase mnmE [Enterococcus faecium E0269]
gi|430488440|gb|ELA65111.1| tRNA modification GTPase mnmE [Enterococcus faecium E0680]
gi|430534996|gb|ELA75419.1| tRNA modification GTPase mnmE [Enterococcus faecium E1185]
gi|430556015|gb|ELA95538.1| tRNA modification GTPase mnmE [Enterococcus faecium E1575]
gi|430570459|gb|ELB09419.1| tRNA modification GTPase mnmE [Enterococcus faecium E1620]
gi|430582436|gb|ELB20863.1| tRNA modification GTPase mnmE [Enterococcus faecium E1627]
gi|430587339|gb|ELB25572.1| tRNA modification GTPase mnmE [Enterococcus faecium E1634]
gi|430606671|gb|ELB44016.1| tRNA modification GTPase mnmE [Enterococcus faecium E2134]
gi|430629925|gb|ELB66307.1| tRNA modification GTPase mnmE [Enterococcus faecium E4215]
Length = 465
Score = 321 bits (822), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 195/483 (40%), Positives = 287/483 (59%), Gaps = 35/483 (7%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT--- 146
F TIAAI T PPG A+ IVRLSG AV + +V++ SG+ R +
Sbjct: 8 FDTIAAIST----PPGEGAISIVRLSGDQAVQLADKVYQ-----------SGNKRLSEVP 52
Query: 147 SHVVEYGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAG 205
SH + YG V+D N +VDEV+ M AP+++TREDVVE+ CHG V + ++L+ L G
Sbjct: 53 SHTIHYGHVVDPKSNQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLREG 112
Query: 206 ATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAK 265
A LA+PGEFT RAFLNGR+DLSQAE V LI AK+ A AL + G S+L+ S+R +
Sbjct: 113 ARLAEPGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQE 172
Query: 266 CIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
+E L ++E +D+ D++ L L+++K + Q ++ L T+ K+L+ GL AI
Sbjct: 173 ILETLAQVEVNIDYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAI 232
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383
+GRPNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+V
Sbjct: 233 IGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVV 292
Query: 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443
E+IGVERS AD+I++ ++ + T+ED +LL K+ I+++NK D
Sbjct: 293 ERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLEATSGLKR--------IILLNKTD 344
Query: 444 CAPSASNEWNKVGNSF-NDHVFTCAVT-GQGIQDLETAIMKIVGLHQIPAGGRRWAVNQR 501
A E K+ N+ VF+ +V G+ LE+AI + + + N R
Sbjct: 345 L--PAQLEQEKLKKLIENEPVFSISVAKNDGLDRLESAISDLFFSGETGERDATYVSNTR 402
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
L + +L + + I+ +P+D ID+ LG++ G+ + +E+++ +F +FC
Sbjct: 403 HIALLEKASLSLEEVIAGIDAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFC 462
Query: 562 IGK 564
+GK
Sbjct: 463 LGK 465
>gi|229176160|ref|ZP_04303652.1| tRNA modification GTPase mnmE [Bacillus cereus MM3]
gi|423461736|ref|ZP_17438532.1| tRNA modification GTPase mnmE [Bacillus cereus BAG5X2-1]
gi|228607319|gb|EEK64649.1| tRNA modification GTPase mnmE [Bacillus cereus MM3]
gi|401134969|gb|EJQ42575.1| tRNA modification GTPase mnmE [Bacillus cereus BAG5X2-1]
Length = 458
Score = 321 bits (822), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 185/476 (38%), Positives = 280/476 (58%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ V R+FK G SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKVNRIFK----------GKDLTEVPSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ + APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSILRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++ LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRTEIAKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T ED +L +Q I+++NK D +
Sbjct: 291 ERSKEMMSQADLVLVVVNYSEALTHEDEDLFRAVQGK--------DFIVIVNKTDLSQVI 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + N + T + QGI +LE AI + I + + N R L +
Sbjct: 343 DMERVTELAAGNRIITTSLIEEQGIDELEKAIADLFFEGTIDSADVTYVSNARHIGLLTQ 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 403 AGKTIGDAIEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|257878640|ref|ZP_05658293.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,230,933]
gi|257881306|ref|ZP_05660959.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,502]
gi|257893099|ref|ZP_05672752.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,408]
gi|260558221|ref|ZP_05830417.1| tRNA modification GTPase mnmE [Enterococcus faecium C68]
gi|293563245|ref|ZP_06677697.1| tRNA modification GTPase TrmE [Enterococcus faecium E1162]
gi|293569165|ref|ZP_06680471.1| tRNA modification GTPase TrmE [Enterococcus faecium E1071]
gi|294619739|ref|ZP_06699144.1| tRNA modification GTPase TrmE [Enterococcus faecium E1679]
gi|294623753|ref|ZP_06702581.1| tRNA modification GTPase TrmE [Enterococcus faecium U0317]
gi|383330175|ref|YP_005356059.1| tRNA modification GTPase MnmE [Enterococcus faecium Aus0004]
gi|406580276|ref|ZP_11055490.1| tRNA modification GTPase TrmE [Enterococcus sp. GMD4E]
gi|406584782|ref|ZP_11059801.1| tRNA modification GTPase TrmE [Enterococcus sp. GMD2E]
gi|406589598|ref|ZP_11064029.1| tRNA modification GTPase TrmE [Enterococcus sp. GMD1E]
gi|415892369|ref|ZP_11549906.1| tRNA modification GTPase TrmE [Enterococcus faecium E4453]
gi|416143524|ref|ZP_11599798.1| tRNA modification GTPase TrmE [Enterococcus faecium E4452]
gi|427396875|ref|ZP_18889501.1| tRNA modification GTPase mnmE [Enterococcus durans FB129-CNAB-4]
gi|430831756|ref|ZP_19449804.1| tRNA modification GTPase mnmE [Enterococcus faecium E0333]
gi|430842991|ref|ZP_19460893.1| tRNA modification GTPase mnmE [Enterococcus faecium E1050]
gi|430848154|ref|ZP_19465981.1| tRNA modification GTPase mnmE [Enterococcus faecium E1133]
gi|430855836|ref|ZP_19473542.1| tRNA modification GTPase mnmE [Enterococcus faecium E1392]
gi|430861169|ref|ZP_19478758.1| tRNA modification GTPase mnmE [Enterococcus faecium E1573]
gi|430952211|ref|ZP_19486254.1| tRNA modification GTPase mnmE [Enterococcus faecium E1576]
gi|430998679|ref|ZP_19488062.1| tRNA modification GTPase mnmE [Enterococcus faecium E1578]
gi|431235067|ref|ZP_19503090.1| tRNA modification GTPase mnmE [Enterococcus faecium E1622]
gi|431255548|ref|ZP_19504671.1| tRNA modification GTPase mnmE [Enterococcus faecium E1623]
gi|431303606|ref|ZP_19508453.1| tRNA modification GTPase mnmE [Enterococcus faecium E1626]
gi|431545138|ref|ZP_19518779.1| tRNA modification GTPase mnmE [Enterococcus faecium E1731]
gi|431726697|ref|ZP_19525448.1| tRNA modification GTPase mnmE [Enterococcus faecium E1904]
gi|431749490|ref|ZP_19538230.1| tRNA modification GTPase mnmE [Enterococcus faecium E2297]
gi|431756029|ref|ZP_19544671.1| tRNA modification GTPase mnmE [Enterococcus faecium E2883]
gi|431768138|ref|ZP_19556579.1| tRNA modification GTPase mnmE [Enterococcus faecium E1321]
gi|431769359|ref|ZP_19557769.1| tRNA modification GTPase mnmE [Enterococcus faecium E1644]
gi|431774637|ref|ZP_19562943.1| tRNA modification GTPase mnmE [Enterococcus faecium E2369]
gi|431777529|ref|ZP_19565782.1| tRNA modification GTPase mnmE [Enterococcus faecium E2560]
gi|431779790|ref|ZP_19567981.1| tRNA modification GTPase mnmE [Enterococcus faecium E4389]
gi|431782432|ref|ZP_19570565.1| tRNA modification GTPase mnmE [Enterococcus faecium E6012]
gi|431784253|ref|ZP_19572295.1| tRNA modification GTPase mnmE [Enterococcus faecium E6045]
gi|447913951|ref|YP_007395363.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Enterococcus faecium
NRRL B-2354]
gi|257812868|gb|EEV41626.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,230,933]
gi|257816964|gb|EEV44292.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,502]
gi|257829478|gb|EEV56085.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,408]
gi|260075395|gb|EEW63701.1| tRNA modification GTPase mnmE [Enterococcus faecium C68]
gi|291588134|gb|EFF19976.1| tRNA modification GTPase TrmE [Enterococcus faecium E1071]
gi|291594009|gb|EFF25478.1| tRNA modification GTPase TrmE [Enterococcus faecium E1679]
gi|291596707|gb|EFF27930.1| tRNA modification GTPase TrmE [Enterococcus faecium U0317]
gi|291604784|gb|EFF34266.1| tRNA modification GTPase TrmE [Enterococcus faecium E1162]
gi|364089243|gb|EHM31949.1| tRNA modification GTPase TrmE [Enterococcus faecium E4452]
gi|364093357|gb|EHM35635.1| tRNA modification GTPase TrmE [Enterococcus faecium E4453]
gi|378939869|gb|AFC64941.1| tRNA modification GTPase MnmE [Enterococcus faecium Aus0004]
gi|404454293|gb|EKA01244.1| tRNA modification GTPase TrmE [Enterococcus sp. GMD4E]
gi|404463586|gb|EKA09197.1| tRNA modification GTPase TrmE [Enterococcus sp. GMD2E]
gi|404470562|gb|EKA15183.1| tRNA modification GTPase TrmE [Enterococcus sp. GMD1E]
gi|425722622|gb|EKU85516.1| tRNA modification GTPase mnmE [Enterococcus durans FB129-CNAB-4]
gi|430480397|gb|ELA57571.1| tRNA modification GTPase mnmE [Enterococcus faecium E0333]
gi|430498045|gb|ELA74053.1| tRNA modification GTPase mnmE [Enterococcus faecium E1050]
gi|430535820|gb|ELA76217.1| tRNA modification GTPase mnmE [Enterococcus faecium E1133]
gi|430546378|gb|ELA86340.1| tRNA modification GTPase mnmE [Enterococcus faecium E1392]
gi|430550202|gb|ELA89999.1| tRNA modification GTPase mnmE [Enterococcus faecium E1573]
gi|430557346|gb|ELA96805.1| tRNA modification GTPase mnmE [Enterococcus faecium E1576]
gi|430563340|gb|ELB02565.1| tRNA modification GTPase mnmE [Enterococcus faecium E1578]
gi|430572927|gb|ELB11763.1| tRNA modification GTPase mnmE [Enterococcus faecium E1622]
gi|430577746|gb|ELB16326.1| tRNA modification GTPase mnmE [Enterococcus faecium E1623]
gi|430580247|gb|ELB18727.1| tRNA modification GTPase mnmE [Enterococcus faecium E1626]
gi|430592186|gb|ELB30208.1| tRNA modification GTPase mnmE [Enterococcus faecium E1731]
gi|430595720|gb|ELB33603.1| tRNA modification GTPase mnmE [Enterococcus faecium E1904]
gi|430611487|gb|ELB48574.1| tRNA modification GTPase mnmE [Enterococcus faecium E2297]
gi|430616144|gb|ELB53069.1| tRNA modification GTPase mnmE [Enterococcus faecium E2883]
gi|430629867|gb|ELB66255.1| tRNA modification GTPase mnmE [Enterococcus faecium E1321]
gi|430633847|gb|ELB69998.1| tRNA modification GTPase mnmE [Enterococcus faecium E2369]
gi|430636934|gb|ELB72978.1| tRNA modification GTPase mnmE [Enterococcus faecium E1644]
gi|430639143|gb|ELB75024.1| tRNA modification GTPase mnmE [Enterococcus faecium E2560]
gi|430641358|gb|ELB77167.1| tRNA modification GTPase mnmE [Enterococcus faecium E4389]
gi|430647069|gb|ELB82517.1| tRNA modification GTPase mnmE [Enterococcus faecium E6012]
gi|430649827|gb|ELB85194.1| tRNA modification GTPase mnmE [Enterococcus faecium E6045]
gi|445189660|gb|AGE31302.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Enterococcus faecium
NRRL B-2354]
Length = 465
Score = 320 bits (821), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 194/483 (40%), Positives = 287/483 (59%), Gaps = 35/483 (7%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT--- 146
F TIAAI T PPG A+ IVRLSG AV + +V++ SG+ R +
Sbjct: 8 FDTIAAIST----PPGEGAISIVRLSGDQAVQLADKVYQ-----------SGNKRLSEVP 52
Query: 147 SHVVEYGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAG 205
SH + YG ++D N +VDEV+ M AP+++TREDVVE+ CHG V + ++L+ L G
Sbjct: 53 SHTIHYGHIVDPKSNQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLREG 112
Query: 206 ATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAK 265
A LA+PGEFT RAFLNGR+DLSQAE V LI AK+ A AL + G S+L+ S+R +
Sbjct: 113 ARLAEPGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQE 172
Query: 266 CIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
+E L ++E +D+ D++ L L+++K + Q ++ L T+ K+L+ GL AI
Sbjct: 173 ILETLAQVEVNIDYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAI 232
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383
+GRPNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+V
Sbjct: 233 IGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVV 292
Query: 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443
E+IGVERS AD+I++ ++ + T+ED +LL K+ I+++NK D
Sbjct: 293 ERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLEATSGLKR--------IILLNKTD 344
Query: 444 CAPSASNEWNKVGNSF-NDHVFTCAVT-GQGIQDLETAIMKIVGLHQIPAGGRRWAVNQR 501
A E K+ N+ VF+ +V G+ LE+AI + + + N R
Sbjct: 345 L--PAQLEQEKLKKLIENEPVFSISVAKNDGLDRLESAISDLFFSGETGERDATYVSNTR 402
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
L + +L + + I+ +P+D ID+ LG++ G+ + +E+++ +F +FC
Sbjct: 403 HIALLEKASLSLEEVIAGIDSGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFC 462
Query: 562 IGK 564
+GK
Sbjct: 463 LGK 465
>gi|227550631|ref|ZP_03980680.1| tRNA modification GTP-binding protein TrmE [Enterococcus faecium
TX1330]
gi|227180232|gb|EEI61204.1| tRNA modification GTP-binding protein TrmE [Enterococcus faecium
TX1330]
Length = 492
Score = 320 bits (821), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 193/483 (39%), Positives = 287/483 (59%), Gaps = 35/483 (7%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT--- 146
F TIAAI T PPG A+ IVRLSG AV + +V+ SG+ R +
Sbjct: 35 FDTIAAIST----PPGEGAISIVRLSGDQAVQLADKVYH-----------SGNKRLSEVP 79
Query: 147 SHVVEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAG 205
SH + YG ++D + +VDEV+ M AP+++TREDVVE+ CHG V + ++L+ L G
Sbjct: 80 SHTIHYGHIVDPKSDQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLREG 139
Query: 206 ATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAK 265
A LA+PGEFT RAFLNGR+DLSQAE V LI AK+ A AL + G S+L+ S+R +
Sbjct: 140 ARLAEPGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQE 199
Query: 266 CIELLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
+E L ++E +D+ D++ L L+++K + Q ++ L T+ K+L+ GL AI
Sbjct: 200 ILETLAQVEVNIDYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAI 259
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383
+GRPNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+V
Sbjct: 260 IGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVV 319
Query: 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443
E+IGVERS AD+I++ ++ + T+ED +LL + K+ I+++NK D
Sbjct: 320 ERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLEATKGLKR--------IILLNKTD 371
Query: 444 CAPSASNE-WNKVGNSFNDHVFTCAVT-GQGIQDLETAIMKIVGLHQIPAGGRRWAVNQR 501
E NK+ N+ VF+ +V G+ LE+AI + + + N R
Sbjct: 372 LPAQLEQEKLNKLIE--NEPVFSISVAKNDGLDHLESAISDLFFSGETGERDATYVSNTR 429
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
L + +L + + I+ +P+D ID+ LG++ G+ + +E+++ +F +FC
Sbjct: 430 HIALLEKASLSLEEVIAGIDAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFC 489
Query: 562 IGK 564
+GK
Sbjct: 490 LGK 492
>gi|433461809|ref|ZP_20419411.1| tRNA modification GTPase TrmE, partial [Halobacillus sp. BAB-2008]
gi|432189704|gb|ELK46787.1| tRNA modification GTPase TrmE, partial [Halobacillus sp. BAB-2008]
Length = 452
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 193/470 (41%), Positives = 273/470 (58%), Gaps = 27/470 (5%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
TI AI T +G GA+ IVRLSGP AV I ++F+ G SH + Y
Sbjct: 4 DTITAISTPMG--EGAIAIVRLSGPEAVSIAAKLFR----------GKDLNEAASHTMHY 51
Query: 153 GVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
G ++D G+V +EV+ M AP+++TREDVVE+ CHG V + R+L L +GA LA+P
Sbjct: 52 GKIIDPETGDVAEEVMVSVMRAPKTFTREDVVEINCHGGLVSVNRLLEIILASGARLAEP 111
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DLSQAE V LI AK+ A + AL + G S L+ +R K +E L
Sbjct: 112 GEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVALKQMDGRLSKLIQDLRQKLLETLA 171
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+E +D+ D++ ++ ++ +K + +V + LETA K+L+ GL AI+GRPNV
Sbjct: 172 HVEVNIDYPEYDDVEEMSHEMMKEKTKEVHAEVTSLLETARQGKILREGLGTAIIGRPNV 231
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSL+NA +AIVTEI GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGVE
Sbjct: 232 GKSSLMNALVHENKAIVTEIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVE 291
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS V AD+I+ ++ D + ED ELL IQ +I+++NK+D
Sbjct: 292 RSRQVLQEADLILFVLNYGDEFNQEDEELLKAIQ--------DMNVIVIVNKMDLENRLD 343
Query: 450 NEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
E +V +H + T + +GI LE AI ++ AG + N R + L
Sbjct: 344 LE--RVKELAGEHPVITTALIREEGIDQLEKAIADTFFEGELDAGDMTYVSNVRHVQLLK 401
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIF 557
+ K+AL + +E +PLD ID+ LG+I G+ + + ++ +F
Sbjct: 402 QAKQALEDARDGMEMGVPLDVVQIDVTRTWEILGEIVGDTVHDSLIDQLF 451
>gi|424764520|ref|ZP_18191944.1| tRNA modification GTPase TrmE [Enterococcus faecium TX1337RF]
gi|402419073|gb|EJV51355.1| tRNA modification GTPase TrmE [Enterococcus faecium TX1337RF]
Length = 485
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 193/483 (39%), Positives = 287/483 (59%), Gaps = 35/483 (7%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT--- 146
F TIAAI T PPG A+ IVRLSG AV + +V+ SG+ R +
Sbjct: 28 FDTIAAIST----PPGEGAISIVRLSGDQAVQLADKVYH-----------SGNKRLSEVP 72
Query: 147 SHVVEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAG 205
SH + YG ++D + +VDEV+ M AP+++TREDVVE+ CHG V + ++L+ L G
Sbjct: 73 SHTIHYGHIVDPKSDQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLREG 132
Query: 206 ATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAK 265
A LA+PGEFT RAFLNGR+DLSQAE V LI AK+ A AL + G S+L+ S+R +
Sbjct: 133 ARLAEPGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQE 192
Query: 266 CIELLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
+E L ++E +D+ D++ L L+++K + Q ++ L T+ K+L+ GL AI
Sbjct: 193 ILETLAQVEVNIDYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAI 252
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383
+GRPNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+V
Sbjct: 253 IGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVV 312
Query: 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443
E+IGVERS AD+I++ ++ + T+ED +LL + K+ I+++NK D
Sbjct: 313 ERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLEATKGLKR--------IILLNKTD 364
Query: 444 CAPSASNE-WNKVGNSFNDHVFTCAVT-GQGIQDLETAIMKIVGLHQIPAGGRRWAVNQR 501
E NK+ N+ VF+ +V G+ LE+AI + + + N R
Sbjct: 365 LPAQLEQEKLNKLIE--NEPVFSISVAKNDGLDHLESAISDLFFSGETGERDATYVSNTR 422
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
L + +L + + I+ +P+D ID+ LG++ G+ + +E+++ +F +FC
Sbjct: 423 HIALLEKASLSLEEVIAGIDAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFC 482
Query: 562 IGK 564
+GK
Sbjct: 483 LGK 485
>gi|421874918|ref|ZP_16306517.1| tRNA modification GTPase TrmE [Brevibacillus laterosporus GI-9]
gi|372456115|emb|CCF16066.1| tRNA modification GTPase TrmE [Brevibacillus laterosporus GI-9]
Length = 458
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 187/478 (39%), Positives = 277/478 (57%), Gaps = 25/478 (5%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
TIA + T +G G + ++R+SG A+ IV ++++ K K S+ SH +
Sbjct: 2 NMDTIAGVATPMG--EGGIAVIRVSGDDAISIVDKIYRG---KNKLST------VDSHTI 50
Query: 151 EYGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG ++D N V+EVL M APR++TREDVVE+ CHG + + +VL LE GA LA
Sbjct: 51 HYGALVDPVANEQVEEVLVSVMKAPRTFTREDVVEINCHGGLISVEKVLDLVLEHGARLA 110
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V LI AK+ A AL+ ++G S L+ +R + IE
Sbjct: 111 EPGEFTKRAFLNGRIDLSQAEAVIDLIRAKTDKALKVALSQVEGKLSKLIKGLRQELIEA 170
Query: 270 LTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+ IE LD+ + ++ N ++ K + Q V L+TA K+L+ GL AI+GRPN
Sbjct: 171 MAHIEVTLDYPEHDVEEFTQNFLLGKCEEVKQQVARLLQTAKQGKILREGLSTAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN++ + ++AIVTEIAGTTRDVIE V V GVP+ L+DTAGIRETDDIVEKIGV
Sbjct: 231 VGKSSLLNSFVQEDKAIVTEIAGTTRDVIEEYVNVRGVPLRLIDTAGIRETDDIVEKIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
E+S + D++++ V+ +E LN +I+++NK D
Sbjct: 291 EKSRQILQQVDLVLLMVNY--------NEFLNDDDLAIFEAAKGLQVIIIVNKTDLEQKL 342
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ +KV +F + T +GI LE AI + ++ + N R L
Sbjct: 343 --DIDKVKEAFPSAPLILTSIKEEKGIDQLEQAIAHLFFTGRVQQEDMTYVSNARHINLL 400
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++A+ + +++P+D ID++ A LG++ GE + E+++ IF +FC+GK
Sbjct: 401 RQAEQAMADAIDGVHQQMPVDMVQIDIKKAWELLGEVIGESVGEDLIDQIFSQFCLGK 458
>gi|257885581|ref|ZP_05665234.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,501]
gi|293553541|ref|ZP_06674168.1| tRNA modification GTPase TrmE [Enterococcus faecium E1039]
gi|430823204|ref|ZP_19441776.1| tRNA modification GTPase mnmE [Enterococcus faecium E0120]
gi|430834929|ref|ZP_19452931.1| tRNA modification GTPase mnmE [Enterococcus faecium E0679]
gi|430839242|ref|ZP_19457183.1| tRNA modification GTPase mnmE [Enterococcus faecium E0688]
gi|430853343|ref|ZP_19471073.1| tRNA modification GTPase mnmE [Enterococcus faecium E1258]
gi|430859064|ref|ZP_19476682.1| tRNA modification GTPase mnmE [Enterococcus faecium E1552]
gi|430866237|ref|ZP_19481514.1| tRNA modification GTPase mnmE [Enterococcus faecium E1574]
gi|431743898|ref|ZP_19532771.1| tRNA modification GTPase mnmE [Enterococcus faecium E2071]
gi|257821437|gb|EEV48567.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,501]
gi|291602296|gb|EFF32521.1| tRNA modification GTPase TrmE [Enterococcus faecium E1039]
gi|430442302|gb|ELA52347.1| tRNA modification GTPase mnmE [Enterococcus faecium E0120]
gi|430484998|gb|ELA61945.1| tRNA modification GTPase mnmE [Enterococcus faecium E0679]
gi|430490700|gb|ELA67196.1| tRNA modification GTPase mnmE [Enterococcus faecium E0688]
gi|430541165|gb|ELA81342.1| tRNA modification GTPase mnmE [Enterococcus faecium E1258]
gi|430544583|gb|ELA84612.1| tRNA modification GTPase mnmE [Enterococcus faecium E1552]
gi|430551465|gb|ELA91216.1| tRNA modification GTPase mnmE [Enterococcus faecium E1574]
gi|430605961|gb|ELB43333.1| tRNA modification GTPase mnmE [Enterococcus faecium E2071]
Length = 465
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 194/483 (40%), Positives = 287/483 (59%), Gaps = 35/483 (7%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT--- 146
F TIAAI T PPG A+ IVRLSG AV + +V++ SG+ R +
Sbjct: 8 FDTIAAIST----PPGEGAISIVRLSGDQAVQLADKVYQ-----------SGNKRLSEVP 52
Query: 147 SHVVEYGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAG 205
SH + YG ++D N +VDEV+ M AP+++TREDVVE+ CHG V + ++L+ L G
Sbjct: 53 SHTIHYGHIVDPKSNQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLREG 112
Query: 206 ATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAK 265
A LA+PGEFT RAFLNGR+DLSQAE V LI AK+ A AL + G S+L+ S+R +
Sbjct: 113 ARLAEPGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQE 172
Query: 266 CIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
+E L ++E +D+ D++ L L+++K + Q ++ L T+ K+L+ GL AI
Sbjct: 173 ILETLAQVEVNIDYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAI 232
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383
+GRPNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+V
Sbjct: 233 IGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVV 292
Query: 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443
E+IGVERS AD+I++ ++ + T+ED +LL K+ I+++NK D
Sbjct: 293 ERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLEATSGLKR--------IILLNKTD 344
Query: 444 CAPSASNEWNKVGNSF-NDHVFTCAVT-GQGIQDLETAIMKIVGLHQIPAGGRRWAVNQR 501
A E K+ N+ VF+ +V G+ LE+AI + + + N R
Sbjct: 345 L--PAQLEQEKLKKLIENEPVFSISVAKNDGLDRLESAISDLFFSGETGERDATYVSNTR 402
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
L + +L + + I+ +P+D ID+ LG++ G+ + +E+++ +F +FC
Sbjct: 403 HIALLEKASLSLEEVIAGIDAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFC 462
Query: 562 IGK 564
+GK
Sbjct: 463 LGK 465
>gi|15616624|ref|NP_244930.1| tRNA modification GTPase TrmE [Bacillus halodurans C-125]
gi|14195295|sp|Q9RCA7.1|MNME_BACHD RecName: Full=tRNA modification GTPase MnmE
gi|5672642|dbj|BAA82680.1| thdF [Bacillus halodurans]
gi|10176687|dbj|BAB07781.1| thiophen and furan oxidation [Bacillus halodurans C-125]
Length = 458
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 188/475 (39%), Positives = 280/475 (58%), Gaps = 21/475 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+GIVRLSG AV + RV++ K ++ SH +
Sbjct: 3 FDTIAAISTALG--EGAIGIVRLSGDEAVQLADRVYRGKKPLQE---------VPSHTIV 51
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + ++DEV+ + APR++TREDV+E+ CHG V + RVL+ L GA LA+
Sbjct: 52 YGHIVDPKTDEIIDEVMVSVLRAPRTFTREDVIEINCHGGLVSVNRVLQLVLNHGARLAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL ++G S+ ++S+R +E +
Sbjct: 112 PGEFTKRAFLNGRIDLSQAEGVIDLIRAKTDRAMNVALKQVEGRLSTKISSLRQALLETV 171
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+E +D+ + + + L+++ D+ + ++++ L TA K+L+ GL I+GRPNV
Sbjct: 172 AHVEVNIDYPEYDAETMTLDMLKDRAQFVRKEIDKLLMTAQQGKILREGLSTVIIGRPNV 231
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGVE
Sbjct: 232 GKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVE 291
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS V A++I++ ++ + + ED L I S I+++NK D
Sbjct: 292 RSREVLKEAELILLVLNFGEELSKEDEALFEAI--------SGMEAIVIVNKTDVEQKID 343
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+ + + T V QGI +LE AI + I +G + N R L +
Sbjct: 344 LTRVRELAAGRPVITTSIVQDQGIDELEAAIASLFFESGIESGDVTYVSNSRHIALLEQA 403
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K A+ +IE ++P+D ID+ A LG+I G+ + E ++ +F +FC+GK
Sbjct: 404 KRAVEDALEAIEMDVPIDMVQIDITRAWELLGEIIGDSVHESLIDQLFSQFCLGK 458
>gi|406582508|ref|ZP_11057627.1| tRNA modification GTPase TrmE, partial [Enterococcus sp. GMD3E]
gi|404457964|gb|EKA04436.1| tRNA modification GTPase TrmE, partial [Enterococcus sp. GMD3E]
Length = 498
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 194/483 (40%), Positives = 287/483 (59%), Gaps = 35/483 (7%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT--- 146
F TIAAI T PPG A+ IVRLSG AV + +V++ SG+ R +
Sbjct: 41 FDTIAAIST----PPGEGAISIVRLSGDQAVQLADKVYQ-----------SGNKRLSEVP 85
Query: 147 SHVVEYGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAG 205
SH + YG ++D N +VDEV+ M AP+++TREDVVE+ CHG V + ++L+ L G
Sbjct: 86 SHTIHYGHIVDPKSNQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLREG 145
Query: 206 ATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAK 265
A LA+PGEFT RAFLNGR+DLSQAE V LI AK+ A AL + G S+L+ S+R +
Sbjct: 146 ARLAEPGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQE 205
Query: 266 CIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
+E L ++E +D+ D++ L L+++K + Q ++ L T+ K+L+ GL AI
Sbjct: 206 ILETLAQVEVNIDYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAI 265
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383
+GRPNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+V
Sbjct: 266 IGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVV 325
Query: 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443
E+IGVERS AD+I++ ++ + T+ED +LL K+ I+++NK D
Sbjct: 326 ERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLEATSGLKR--------IILLNKTD 377
Query: 444 CAPSASNEWNKVGNSF-NDHVFTCAVT-GQGIQDLETAIMKIVGLHQIPAGGRRWAVNQR 501
A E K+ N+ VF+ +V G+ LE+AI + + + N R
Sbjct: 378 LP--AQLEQEKLKKLIENEPVFSISVAKNDGLDRLESAISDLFFSGETGERDATYVSNTR 435
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
L + +L + + I+ +P+D ID+ LG++ G+ + +E+++ +F +FC
Sbjct: 436 HIALLEKASLSLEEVIAGIDSGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFC 495
Query: 562 IGK 564
+GK
Sbjct: 496 LGK 498
>gi|314940137|ref|ZP_07847317.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133a04]
gi|314943032|ref|ZP_07849836.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133C]
gi|314948150|ref|ZP_07851546.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0082]
gi|314953436|ref|ZP_07856354.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133A]
gi|314993825|ref|ZP_07859161.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133B]
gi|314998150|ref|ZP_07863032.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133a01]
gi|389869881|ref|YP_006377304.1| tRNA modification GTP-binding protein TrmE [Enterococcus faecium
DO]
gi|424793326|ref|ZP_18219451.1| tRNA modification GTPase TrmE [Enterococcus faecium V689]
gi|424806862|ref|ZP_18232285.1| tRNA modification GTPase TrmE [Enterococcus faecium S447]
gi|424819233|ref|ZP_18244359.1| tRNA modification GTPase TrmE [Enterococcus faecium R501]
gi|424857938|ref|ZP_18282017.1| tRNA modification GTPase TrmE [Enterococcus faecium R499]
gi|424907551|ref|ZP_18331030.1| tRNA modification GTPase TrmE [Enterococcus faecium R497]
gi|424951462|ref|ZP_18366556.1| tRNA modification GTPase TrmE [Enterococcus faecium R496]
gi|424957782|ref|ZP_18372489.1| tRNA modification GTPase TrmE [Enterococcus faecium R446]
gi|424962343|ref|ZP_18376705.1| tRNA modification GTPase TrmE [Enterococcus faecium P1986]
gi|424967264|ref|ZP_18380971.1| tRNA modification GTPase TrmE [Enterococcus faecium P1140]
gi|424971803|ref|ZP_18385211.1| tRNA modification GTPase TrmE [Enterococcus faecium P1139]
gi|424975889|ref|ZP_18389016.1| tRNA modification GTPase TrmE [Enterococcus faecium P1137]
gi|424978592|ref|ZP_18391502.1| tRNA modification GTPase TrmE [Enterococcus faecium P1123]
gi|424981739|ref|ZP_18394449.1| tRNA modification GTPase TrmE [Enterococcus faecium ERV99]
gi|424984806|ref|ZP_18397323.1| tRNA modification GTPase TrmE [Enterococcus faecium ERV69]
gi|424989007|ref|ZP_18401296.1| tRNA modification GTPase TrmE [Enterococcus faecium ERV38]
gi|424990991|ref|ZP_18403174.1| tRNA modification GTPase TrmE [Enterococcus faecium ERV26]
gi|424996487|ref|ZP_18408290.1| tRNA modification GTPase TrmE [Enterococcus faecium ERV168]
gi|424999002|ref|ZP_18410655.1| tRNA modification GTPase TrmE [Enterococcus faecium ERV165]
gi|425002215|ref|ZP_18413663.1| tRNA modification GTPase TrmE [Enterococcus faecium ERV161]
gi|425005657|ref|ZP_18416878.1| tRNA modification GTPase TrmE [Enterococcus faecium ERV102]
gi|425008333|ref|ZP_18419419.1| tRNA modification GTPase TrmE [Enterococcus faecium ERV1]
gi|425012503|ref|ZP_18423313.1| tRNA modification GTPase TrmE [Enterococcus faecium E422]
gi|425013681|ref|ZP_18424400.1| tRNA modification GTPase TrmE [Enterococcus faecium E417]
gi|425016685|ref|ZP_18427234.1| tRNA modification GTPase TrmE [Enterococcus faecium C621]
gi|425020969|ref|ZP_18431254.1| tRNA modification GTPase TrmE [Enterococcus faecium C497]
gi|425024288|ref|ZP_18434361.1| tRNA modification GTPase TrmE [Enterococcus faecium C1904]
gi|425033623|ref|ZP_18438577.1| tRNA modification GTPase TrmE [Enterococcus faecium 515]
gi|425034572|ref|ZP_18439455.1| tRNA modification GTPase TrmE [Enterococcus faecium 514]
gi|425040406|ref|ZP_18444880.1| tRNA modification GTPase TrmE [Enterococcus faecium 513]
gi|425040641|ref|ZP_18445096.1| tRNA modification GTPase TrmE [Enterococcus faecium 511]
gi|425047061|ref|ZP_18451038.1| tRNA modification GTPase TrmE [Enterococcus faecium 510]
gi|425050511|ref|ZP_18454249.1| tRNA modification GTPase TrmE [Enterococcus faecium 509]
gi|425053373|ref|ZP_18456919.1| tRNA modification GTPase TrmE [Enterococcus faecium 506]
gi|425054270|ref|ZP_18457782.1| tRNA modification GTPase TrmE [Enterococcus faecium 505]
gi|425062486|ref|ZP_18465639.1| tRNA modification GTPase TrmE [Enterococcus faecium 503]
gi|313587862|gb|EFR66707.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133a01]
gi|313591716|gb|EFR70561.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133B]
gi|313594539|gb|EFR73384.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133A]
gi|313598232|gb|EFR77077.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133C]
gi|313640642|gb|EFS05222.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133a04]
gi|313645404|gb|EFS09984.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0082]
gi|388535130|gb|AFK60322.1| tRNA modification GTP-binding protein TrmE [Enterococcus faecium
DO]
gi|402916444|gb|EJX37322.1| tRNA modification GTPase TrmE [Enterococcus faecium V689]
gi|402918785|gb|EJX39447.1| tRNA modification GTPase TrmE [Enterococcus faecium S447]
gi|402926533|gb|EJX46568.1| tRNA modification GTPase TrmE [Enterococcus faecium R501]
gi|402927808|gb|EJX47737.1| tRNA modification GTPase TrmE [Enterococcus faecium R499]
gi|402930081|gb|EJX49778.1| tRNA modification GTPase TrmE [Enterococcus faecium R496]
gi|402930142|gb|EJX49833.1| tRNA modification GTPase TrmE [Enterococcus faecium R497]
gi|402940995|gb|EJX59757.1| tRNA modification GTPase TrmE [Enterococcus faecium P1986]
gi|402942721|gb|EJX61286.1| tRNA modification GTPase TrmE [Enterococcus faecium R446]
gi|402952362|gb|EJX70184.1| tRNA modification GTPase TrmE [Enterococcus faecium P1137]
gi|402954790|gb|EJX72377.1| tRNA modification GTPase TrmE [Enterococcus faecium P1140]
gi|402957359|gb|EJX74751.1| tRNA modification GTPase TrmE [Enterococcus faecium P1139]
gi|402961175|gb|EJX78232.1| tRNA modification GTPase TrmE [Enterococcus faecium P1123]
gi|402962635|gb|EJX79555.1| tRNA modification GTPase TrmE [Enterococcus faecium ERV99]
gi|402967769|gb|EJX84295.1| tRNA modification GTPase TrmE [Enterococcus faecium ERV69]
gi|402970160|gb|EJX86521.1| tRNA modification GTPase TrmE [Enterococcus faecium ERV38]
gi|402973436|gb|EJX89563.1| tRNA modification GTPase TrmE [Enterococcus faecium ERV168]
gi|402978115|gb|EJX93879.1| tRNA modification GTPase TrmE [Enterococcus faecium ERV26]
gi|402981064|gb|EJX96618.1| tRNA modification GTPase TrmE [Enterococcus faecium ERV165]
gi|402983999|gb|EJX99337.1| tRNA modification GTPase TrmE [Enterococcus faecium ERV161]
gi|402985335|gb|EJY00552.1| tRNA modification GTPase TrmE [Enterococcus faecium ERV102]
gi|402992817|gb|EJY07484.1| tRNA modification GTPase TrmE [Enterococcus faecium ERV1]
gi|402992958|gb|EJY07611.1| tRNA modification GTPase TrmE [Enterococcus faecium E422]
gi|403000494|gb|EJY14611.1| tRNA modification GTPase TrmE [Enterococcus faecium E417]
gi|403006350|gb|EJY20001.1| tRNA modification GTPase TrmE [Enterococcus faecium C621]
gi|403007236|gb|EJY20826.1| tRNA modification GTPase TrmE [Enterococcus faecium C1904]
gi|403007970|gb|EJY21505.1| tRNA modification GTPase TrmE [Enterococcus faecium C497]
gi|403009210|gb|EJY22673.1| tRNA modification GTPase TrmE [Enterococcus faecium 515]
gi|403012991|gb|EJY26141.1| tRNA modification GTPase TrmE [Enterococcus faecium 513]
gi|403020070|gb|EJY32630.1| tRNA modification GTPase TrmE [Enterococcus faecium 514]
gi|403022562|gb|EJY34919.1| tRNA modification GTPase TrmE [Enterococcus faecium 510]
gi|403023298|gb|EJY35571.1| tRNA modification GTPase TrmE [Enterococcus faecium 509]
gi|403028085|gb|EJY39926.1| tRNA modification GTPase TrmE [Enterococcus faecium 511]
gi|403030604|gb|EJY42281.1| tRNA modification GTPase TrmE [Enterococcus faecium 506]
gi|403036317|gb|EJY47668.1| tRNA modification GTPase TrmE [Enterococcus faecium 505]
gi|403038079|gb|EJY49317.1| tRNA modification GTPase TrmE [Enterococcus faecium 503]
Length = 485
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 194/483 (40%), Positives = 287/483 (59%), Gaps = 35/483 (7%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT--- 146
F TIAAI T PPG A+ IVRLSG AV + +V++ SG+ R +
Sbjct: 28 FDTIAAIST----PPGEGAISIVRLSGDQAVQLADKVYQ-----------SGNKRLSEVP 72
Query: 147 SHVVEYGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAG 205
SH + YG ++D N +VDEV+ M AP+++TREDVVE+ CHG V + ++L+ L G
Sbjct: 73 SHTIHYGHIVDPKSNQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLREG 132
Query: 206 ATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAK 265
A LA+PGEFT RAFLNGR+DLSQAE V LI AK+ A AL + G S+L+ S+R +
Sbjct: 133 ARLAEPGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQE 192
Query: 266 CIELLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
+E L ++E +D+ D++ L L+++K + Q ++ L T+ K+L+ GL AI
Sbjct: 193 ILETLAQVEVNIDYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAI 252
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383
+GRPNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+V
Sbjct: 253 IGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVV 312
Query: 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443
E+IGVERS AD+I++ ++ + T+ED +LL K+ I+++NK D
Sbjct: 313 ERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLEATSGLKR--------IILLNKTD 364
Query: 444 CAPSASNEWNKVGNSF-NDHVFTCAVT-GQGIQDLETAIMKIVGLHQIPAGGRRWAVNQR 501
A E K+ N+ VF+ +V G+ LE+AI + + + N R
Sbjct: 365 LP--AQLEQEKLKKLIENEPVFSISVAKNDGLDRLESAISDLFFSGETGERDATYVSNTR 422
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
L + +L + + I+ +P+D ID+ LG++ G+ + +E+++ +F +FC
Sbjct: 423 HIALLEKASLSLEEVIAGIDSGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFC 482
Query: 562 IGK 564
+GK
Sbjct: 483 LGK 485
>gi|69247494|ref|ZP_00604364.1| tRNA modification GTPase TrmE:Small GTP-binding protein
domain:GTP-binding [Enterococcus faecium DO]
gi|68194819|gb|EAN09294.1| tRNA modification GTPase TrmE:Small GTP-binding protein
domain:GTP-binding [Enterococcus faecium DO]
Length = 494
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 194/483 (40%), Positives = 287/483 (59%), Gaps = 35/483 (7%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT--- 146
F TIAAI T PPG A+ IVRLSG AV + +V++ SG+ R +
Sbjct: 37 FDTIAAIST----PPGEGAISIVRLSGDQAVQLADKVYQ-----------SGNKRLSEVP 81
Query: 147 SHVVEYGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAG 205
SH + YG ++D N +VDEV+ M AP+++TREDVVE+ CHG V + ++L+ L G
Sbjct: 82 SHTIHYGHIVDPKSNQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLREG 141
Query: 206 ATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAK 265
A LA+PGEFT RAFLNGR+DLSQAE V LI AK+ A AL + G S+L+ S+R +
Sbjct: 142 ARLAEPGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQE 201
Query: 266 CIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
+E L ++E +D+ D++ L L+++K + Q ++ L T+ K+L+ GL AI
Sbjct: 202 ILETLAQVEVNIDYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAI 261
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383
+GRPNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+V
Sbjct: 262 IGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVV 321
Query: 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443
E+IGVERS AD+I++ ++ + T+ED +LL K+ I+++NK D
Sbjct: 322 ERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLEATSGLKR--------IILLNKTD 373
Query: 444 CAPSASNEWNKVGNSF-NDHVFTCAVT-GQGIQDLETAIMKIVGLHQIPAGGRRWAVNQR 501
A E K+ N+ VF+ +V G+ LE+AI + + + N R
Sbjct: 374 LP--AQLEQEKLKKLIENEPVFSISVAKNDGLDRLESAISDLFFSGETGERDATYVSNTR 431
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
L + +L + + I+ +P+D ID+ LG++ G+ + +E+++ +F +FC
Sbjct: 432 HIALLEKASLSLEEVIAGIDSGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFC 491
Query: 562 IGK 564
+GK
Sbjct: 492 LGK 494
>gi|392988244|ref|YP_006486837.1| tRNA modification GTPase TrmE [Enterococcus hirae ATCC 9790]
gi|392335664|gb|AFM69946.1| tRNA modification GTPase TrmE [Enterococcus hirae ATCC 9790]
Length = 465
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 193/480 (40%), Positives = 281/480 (58%), Gaps = 29/480 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVRLSG AV + +V++ KK SH
Sbjct: 8 FDTIAAIST----PPGEGAISIVRLSGDQAVALADKVYRCGKK--------SLLEVPSHT 55
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG + D ++ ++DEV+ MLAP+++TREDVVE+ CHG V + ++L+ L GA L
Sbjct: 56 IHYGHITDPKNEQIIDEVMVSVMLAPKTFTREDVVEINCHGGIVVVNQILQLLLREGARL 115
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQAE V LI AK+ A AL + G SSL+ S+R + +E
Sbjct: 116 AEPGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSSLIRSLRQEILE 175
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L ++E +D+ D++ L L+++K + Q ++ L T+ K+L+ GL AI+GR
Sbjct: 176 TLAQVEVNIDYPEYDDVEELTTRLLLEKATMIQQRIQALLATSKQGKVLREGLSTAIIGR 235
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+I
Sbjct: 236 PNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDLVEQI 295
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS +D+I++ ++ + T ED +LL K+ I+++NK D
Sbjct: 296 GVERSRKALSESDLILLVLNQSEPLTREDEQLLEATNGLKR--------IVLLNKTDLPQ 347
Query: 447 SASNEWNKVGNSFNDH-VFTCAVT-GQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCE 504
E ++ D VF +V G+ LETAI + Q + N R
Sbjct: 348 KLEKE--ELDQWLEDEPVFAVSVAKNDGLDQLETAIADLFFGGQTGERDATYVSNTRHIA 405
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + +L + + IE +P+D ID+ LG++ G+ + +E+++ +F +FC+GK
Sbjct: 406 LLEKASISLAEVVAGIEAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 465
>gi|339006724|ref|ZP_08639299.1| tRNA modification GTPase MnmE [Brevibacillus laterosporus LMG
15441]
gi|338775933|gb|EGP35461.1| tRNA modification GTPase MnmE [Brevibacillus laterosporus LMG
15441]
Length = 456
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 186/477 (38%), Positives = 277/477 (58%), Gaps = 25/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIA + T +G G + ++R+SG A+ IV ++++ K K S+ SH +
Sbjct: 1 MDTIAGVATPMG--EGGIAVIRVSGDDAISIVDKIYRG---KNKLST------VDSHTIH 49
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V+EVL M APR++TREDVVE+ CHG + + +VL LE GA LA+
Sbjct: 50 YGALVDPVANEQVEEVLVSVMKAPRTFTREDVVEINCHGGLISVEKVLDLVLEHGARLAE 109
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A AL+ ++G S L+ +R + IE +
Sbjct: 110 PGEFTKRAFLNGRIDLSQAEAVIDLIRAKTDKALKVALSQVEGKLSKLIKGLRQELIEAM 169
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IE LD+ + ++ N ++ K + Q V L+TA K+L+ GL AI+GRPNV
Sbjct: 170 AHIEVTLDYPEHDVEEFTQNFLLGKCEEVKQQVARLLQTAKQGKILREGLSTAIIGRPNV 229
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN++ + ++AIVTEIAGTTRDVIE V V GVP+ L+DTAGIRETDDIVEKIGVE
Sbjct: 230 GKSSLLNSFVQEDKAIVTEIAGTTRDVIEEYVNVRGVPLRLIDTAGIRETDDIVEKIGVE 289
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S + D++++ V+ +E LN +I+++NK D
Sbjct: 290 KSRQILQQVDLVLLMVNY--------NEFLNDDDLAIFEAAKGLQVIIIVNKTDLEQKL- 340
Query: 450 NEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ +K+ +F + T +GI LE AI + ++ + N R L
Sbjct: 341 -DIDKIKEAFPSAPLILTSIKEEKGIDQLEQAIAHLFFTGRVQQEDMTYVSNARHINLLR 399
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++A+ + +++P+D ID++ A LG++ GE + E+++ IF +FC+GK
Sbjct: 400 QAEQAMADAIDGVHQQMPVDMVQIDIKKAWELLGEVIGESVGEDLIDQIFSQFCLGK 456
>gi|424953284|ref|ZP_18368257.1| tRNA modification GTPase TrmE [Enterococcus faecium R494]
gi|402939442|gb|EJX58350.1| tRNA modification GTPase TrmE [Enterococcus faecium R494]
Length = 485
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 194/483 (40%), Positives = 287/483 (59%), Gaps = 35/483 (7%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT--- 146
F TIAAI T PPG A+ IVRLSG AV + +V++ SG+ R +
Sbjct: 28 FDTIAAIST----PPGEGAISIVRLSGDQAVQLADKVYQ-----------SGNKRLSEVP 72
Query: 147 SHVVEYGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAG 205
SH + YG ++D N +VDEV+ M AP+++TREDVVE+ CHG V + ++L+ L G
Sbjct: 73 SHTIHYGHIVDPKSNQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLREG 132
Query: 206 ATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAK 265
A LA+PGEFT RAFLNGR+DLSQAE V LI AK+ A AL + G S+L+ S+R +
Sbjct: 133 ARLAEPGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQE 192
Query: 266 CIELLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
+E L ++E +D+ D++ L L+++K + Q ++ L T+ K+L+ GL AI
Sbjct: 193 ILETLAQVEVNIDYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAI 252
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383
+GRPNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+V
Sbjct: 253 IGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVV 312
Query: 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443
E+IGVERS AD+I++ ++ + T+ED +LL K+ I+++NK D
Sbjct: 313 ERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLEATSGLKR--------IILLNKTD 364
Query: 444 CAPSASNEWNKVGNSF-NDHVFTCAVT-GQGIQDLETAIMKIVGLHQIPAGGRRWAVNQR 501
A E K+ N+ VF+ +V G+ LE+AI + + + N R
Sbjct: 365 LP--AQLEQEKLKKLIENEPVFSISVAKNDGLDRLESAISDLFFSGETGERDATYVSNTR 422
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
L + +L + + I+ +P+D ID+ LG++ G+ + +E+++ +F +FC
Sbjct: 423 HIALLEKASLSLEEVIAGIDSGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFC 482
Query: 562 IGK 564
+GK
Sbjct: 483 LGK 485
>gi|386727817|ref|YP_006194143.1| protein MnmE [Paenibacillus mucilaginosus K02]
gi|384094942|gb|AFH66378.1| protein MnmE [Paenibacillus mucilaginosus K02]
Length = 458
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 193/475 (40%), Positives = 279/475 (58%), Gaps = 25/475 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T G G + ++R+SG AV + ++F KK + + H V YG
Sbjct: 5 TIAAIATPSG--EGGIAVIRVSGDEAVAVSDKIFTGKKKLAEVDT---------HTVNYG 53
Query: 154 VVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+ + V +EVL M APRS+T+EDVVE+ CHG V +R+VL LE+GA LA+PG
Sbjct: 54 YIREPDTGVRTEEVLVTVMRAPRSFTKEDVVEISCHGGFVSVRKVLDLLLESGARLAEPG 113
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RA+LNGR+DLSQAE V LI AKS A AL +G S + +R + +EL+
Sbjct: 114 EFTKRAYLNGRIDLSQAEAVIDLIRAKSDRAFRIALKQSEGTLSKRIKELRHRLVELMAH 173
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IE +D+ + ++ L + DK A D+E+ L+TA K+L+ GL AI+GRPNVGK
Sbjct: 174 IEVNIDYPEHDVEELTNLFIKDKCSAALADIEHLLQTAQQGKILREGLVTAIIGRPNVGK 233
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSL+N ++ ERAIVTEIAGTTRDV+E V V G+P+ LLDTAGIRET D+VE+IGVE+S
Sbjct: 234 SSLMNTLAQEERAIVTEIAGTTRDVVEEYVHVNGIPLKLLDTAGIRETSDLVEQIGVEKS 293
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
AD+I++ + + ++ L+ +++ + +I +INK D E
Sbjct: 294 RQALSDADLILLVFNGAEPLQPDELSLIEQLRGRQ--------VIAIINKQDLPQQIEIE 345
Query: 452 WNKVGNSF-NDHVFTCAVTG-QGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+ + SF ++HV ++ QGI DLE AI + Q+ + + N R L +
Sbjct: 346 FLR--ESFGSEHVVPMSILAQQGIADLEKAIAGLFFSGQVESSDLTYVSNARHIGLLKQA 403
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ AL + E +P+D ID+R+A LG+I G+ +SE ++ IF +FC+GK
Sbjct: 404 RTALTEAHQAAESFVPIDMIQIDIRNAWEHLGEIIGDAVSESLIDQIFSQFCLGK 458
>gi|375088163|ref|ZP_09734505.1| tRNA modification GTPase mnmE [Dolosigranulum pigrum ATCC 51524]
gi|374562993|gb|EHR34316.1| tRNA modification GTPase mnmE [Dolosigranulum pigrum ATCC 51524]
Length = 462
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 189/480 (39%), Positives = 285/480 (59%), Gaps = 29/480 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG +GIVR+SG A++I +++ KK +H
Sbjct: 5 FDTIAAIST----PPGEGGIGIVRISGDEAIEIADKLYSMGKKSLADQD--------THT 52
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG V++ + G++VDEV+ M AP++YTREDVVE+ HG + + +VL+ L GA L
Sbjct: 53 IHYGKVVNPKTGDIVDEVMVSVMRAPKTYTREDVVEINSHGGILVVNKVLQVVLNNGARL 112
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQAE V +I AK+ A A+ + G + L+ +R K ++
Sbjct: 113 AEPGEFTKRAFLNGRIDLSQAEAVMDMIRAKTDRAMHVAVDQLDGQMARLIRDLRQKILD 172
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L ++E +D+ D++ + L+ DK + D++ LETA K+L+ GL AI+GR
Sbjct: 173 TLAQVEVNIDYPEYDDVEEMTSQLLEDKAREVKADIQKLLETAQQGKILREGLATAIIGR 232
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN + ++AIVT++AGTTRDVIE V V GVP+ L+DTAGIRETDD VEKI
Sbjct: 233 PNVGKSSLLNTLLRQDKAIVTDVAGTTRDVIEEYVNVKGVPLKLIDTAGIRETDDEVEKI 292
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GV+RS AD+I++ + + T+ED L+ ++TE +IL +NK D
Sbjct: 293 GVDRSRQAIQQADLILLVFNQSEKLTAEDEALI-------EATEGQNRIIL-LNKTDLDQ 344
Query: 447 SASNEWNKVGNSF-NDHVF-TCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCE 504
+ +K+ ND + T +T G+ +L+ I ++ Q + N R
Sbjct: 345 QLN--VDKLSQLIANDPIVSTSMMTQAGMDELQDKIAELFFSGQTGERDATYVSNTRHIA 402
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L ++AL + + I ++P+D ID+R A LG+I+G+ + +E+++ +F +FC+GK
Sbjct: 403 LLEEAEDALSEVLNGIALDMPVDLVQIDMRRAWDLLGEITGDSVQDELITKLFSQFCLGK 462
>gi|299541770|ref|ZP_07052093.1| tRNA modification GTPase trmE [Lysinibacillus fusiformis ZC1]
gi|424740051|ref|ZP_18168461.1| tRNA modification GTPase trmE [Lysinibacillus fusiformis ZB2]
gi|298725508|gb|EFI66149.1| tRNA modification GTPase trmE [Lysinibacillus fusiformis ZC1]
gi|422946274|gb|EKU40687.1| tRNA modification GTPase trmE [Lysinibacillus fusiformis ZB2]
Length = 461
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 190/478 (39%), Positives = 282/478 (58%), Gaps = 24/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG AV I ++FK G SH +
Sbjct: 3 FDTIAAISTPMG--EGAIAIVRLSGDEAVTIADKIFKS-------PGGKSLTTKDSHTIH 53
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N VV+EV+ M P+++TREDVVE+ CHG V ++RVL+ L +GA LA+
Sbjct: 54 YGHLVDPKTNEVVEEVMLSLMRGPKTFTREDVVEINCHGGLVSVKRVLQLALTSGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL + G S L+ +R +E L
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMDGKLSRLIGDLRQALLETL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + + ++++K + ++ L+T++ K+L+ GL I+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTVPVLIEKCTWVKNEIIKLLQTSSQGKILREGLSTVILGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + +AIVT+IAGTTRD+IE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 234 VGKSSLLNSLVQENKAIVTDIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS GAD+I+ ++ D T+ED L I+ + I+++NK D
Sbjct: 294 ERSREALRGADLILFVLNYADELTAEDERLFETIE--------AMDYIVIVNKTDLPQKI 345
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ +V +H V T + +GI +LE AI + QI AG + N R L
Sbjct: 346 --DLARVKELAGEHRIVTTSLLQEEGITELEEAIAALFFEGQIEAGDLTYVSNARHIALL 403
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + + ++ ++ +P+D ID+ LG+I G+ + E +++ +F +FC+GK
Sbjct: 404 HQAQATVEDAIAAAQDGVPVDMVQIDVTRTWEILGEIIGDTVQESLINQLFSQFCLGK 461
>gi|255527592|ref|ZP_05394456.1| tRNA modification GTPase TrmE [Clostridium carboxidivorans P7]
gi|296186790|ref|ZP_06855191.1| tRNA modification GTPase TrmE [Clostridium carboxidivorans P7]
gi|255508725|gb|EET85101.1| tRNA modification GTPase TrmE [Clostridium carboxidivorans P7]
gi|296048504|gb|EFG87937.1| tRNA modification GTPase TrmE [Clostridium carboxidivorans P7]
Length = 459
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 188/475 (39%), Positives = 290/475 (61%), Gaps = 21/475 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G G + I+R+SG A+ IV +F+ V +KK +P + +
Sbjct: 4 FDTIAAISTVLG--EGGISIIRVSGDKALKIVSGLFRGVNEKK-----LDDIKP--YTIR 54
Query: 152 YGVVLDRH-GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++++ G+ +DEVL M APRS+T ED VE+ CHG V +R+L ++ GA +A+
Sbjct: 55 YGFIIEKDTGDTLDEVLVSYMKAPRSFTAEDTVEINCHGGVVATQRILEEVVKNGARIAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I AK+ + +A+A +G S + +R K +E++
Sbjct: 115 PGEFTKRAFLNGRIDLSQAEAVIDIIRAKTELSMKSAVAQSKGKVSEEINLIRNKLLEIV 174
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IEA +D+ +D++ + + V ++ + DV N L+TA K+++ GL IVG+PNV
Sbjct: 175 AHIEATVDYPEDDLEEVTADKVTMQLKDVVGDVNNILKTAEEGKIIREGLNTVIVGKPNV 234
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN+ + +RAIVTEI GTTRDVIE + + GVPV ++DTAGIRET+D VEKIGVE
Sbjct: 235 GKSSLLNSLLREKRAIVTEIPGTTRDVIEEYINIDGVPVKIVDTAGIRETNDFVEKIGVE 294
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S+ AD+II+ + +ED E+++ I+ K I+++NK D +
Sbjct: 295 KSKEKINEADLIILMLDLSRELDNEDREIIDYIKDKK--------YIILLNKSDLGGKIN 346
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
E K NS N V T A TG+G+ L I ++ ++ + N R E L+R
Sbjct: 347 KEDIKNLNS-NYIVETSAKTGEGLDKLRECIRELFFKGEVTSKD-ILITNTRHKEALIRA 404
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
E+ + +++ +D +ID+R+A + LG+I+G+ + E++++ IF +FC+GK
Sbjct: 405 NESCAQALDALKNTAAIDLASIDIRNAWMNLGEITGDTLEEDIINKIFSEFCLGK 459
>gi|379725068|ref|YP_005317199.1| protein MnmE [Paenibacillus mucilaginosus 3016]
gi|378573740|gb|AFC34050.1| MnmE [Paenibacillus mucilaginosus 3016]
Length = 458
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 193/475 (40%), Positives = 279/475 (58%), Gaps = 25/475 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T G G + ++R+SG AV + ++F KK + + H V YG
Sbjct: 5 TIAAIATPSG--EGGIAVIRVSGDEAVAVSDKIFAGKKKLAEVDT---------HTVNYG 53
Query: 154 VVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+ + V +EVL M APRS+T+EDVVE+ CHG V +R+VL LE+GA LA+PG
Sbjct: 54 YIREPDTGVRTEEVLVTVMRAPRSFTKEDVVEISCHGGFVSVRKVLDLLLESGARLAEPG 113
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RA+LNGR+DLSQAE V LI AKS A AL +G S + +R + +EL+
Sbjct: 114 EFTKRAYLNGRIDLSQAEAVIDLIRAKSDRAFRIALKQSEGTLSKRIKELRHRLVELMAH 173
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IE +D+ + ++ L + DK A D+E+ L+TA K+L+ GL AI+GRPNVGK
Sbjct: 174 IEVNIDYPEHDVEELTNLFIKDKCSAALADIEHLLQTAQQGKILREGLVTAIIGRPNVGK 233
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSL+N ++ ERAIVTEIAGTTRDV+E V V G+P+ LLDTAGIRET D+VE+IGVE+S
Sbjct: 234 SSLMNTLAQEERAIVTEIAGTTRDVVEEYVHVNGIPLKLLDTAGIRETSDLVEQIGVEKS 293
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
AD+I++ + + ++ L+ +++ + +I +INK D E
Sbjct: 294 RQALSDADLILLVFNGAEPLQPDELSLIEQLRGRQ--------VIAIINKQDLPQQIEIE 345
Query: 452 WNKVGNSF-NDHVFTCAVTG-QGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+ + SF ++HV ++ QGI DLE AI + Q+ + + N R L +
Sbjct: 346 FLR--ESFGSEHVVPMSILAQQGIADLEKAIAGLFFSGQVESSDLTYVSNARHIGLLKQA 403
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ AL + E +P+D ID+R+A LG+I G+ +SE ++ IF +FC+GK
Sbjct: 404 RTALTEAHQAAESFVPIDMIQIDIRNAWEHLGEIIGDAVSESLIDQIFSQFCLGK 458
>gi|288554601|ref|YP_003426536.1| tRNA modification GTPase TrmE [Bacillus pseudofirmus OF4]
gi|288545761|gb|ADC49644.1| tRNA modification GTPase TrmE [Bacillus pseudofirmus OF4]
Length = 456
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 187/476 (39%), Positives = 283/476 (59%), Gaps = 25/476 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+GIVRLSG AV I +++K K + +S H +
Sbjct: 3 FDTIAAISTALG--EGAIGIVRLSGDEAVAIADKIYKGAKPLSEAAS---------HTIV 51
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG ++D V +E + M APR++TREDVVE+ CHG V + +VL+ L+ GA LA+P
Sbjct: 52 YGYIMDGETRV-EEAMVSIMRAPRTFTREDVVEINCHGGLVSVNKVLKLALKHGARLAEP 110
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DLSQAE V LI AK+ A + AL ++G S + +R +E +
Sbjct: 111 GEFTKRAFLNGRIDLSQAEGVMDLIRAKTDKAMNVALGQVEGRLSKKIAILRQALLETVA 170
Query: 272 EIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+E +D+ + + + +L+++K + + ++++ L TAN K+L+ GL IVGRPNVG
Sbjct: 171 SVEVNIDYPEYDAEVVTHDLLIEKANFVEREIDKLLGTANQGKILREGLSTVIVGRPNVG 230
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLN+ E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGVER
Sbjct: 231 KSSLLNSLVHEEKAIVTDIAGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDMVERIGVER 290
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S V A++I++ ++ + +SED L ++ +I+++NK D
Sbjct: 291 SRQVLKEAELILLVLNYGEELSSEDEALFEAVK--------HLNVIVIVNKTDVEQKI-- 340
Query: 451 EWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ N+V V T + +G+ +LE+AI + + +G + N R L +
Sbjct: 341 DLNRVRELAEGRPVVTTSLIKDEGVDELESAIASLFFEGDLESGDATYVSNSRHIALLEQ 400
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K + KS+I+ +P+D ID+ LG+I G+ + E ++ +F +FC+GK
Sbjct: 401 AKSTIQDAKSAIDMGVPIDLVQIDITRTRELLGEIIGDSVHESLIDQLFSQFCLGK 456
>gi|423394317|ref|ZP_17371518.1| tRNA modification GTPase mnmE [Bacillus cereus BAG2X1-1]
gi|423410282|ref|ZP_17387429.1| tRNA modification GTPase mnmE [Bacillus cereus BAG2X1-3]
gi|401648279|gb|EJS65875.1| tRNA modification GTPase mnmE [Bacillus cereus BAG2X1-3]
gi|401658688|gb|EJS76178.1| tRNA modification GTPase mnmE [Bacillus cereus BAG2X1-1]
Length = 458
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 185/476 (38%), Positives = 278/476 (58%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG AV+ R+FK G SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGDDAVEKANRIFK----------GKDLTEVPSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTNQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + ++ LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED L +Q I+++NK D
Sbjct: 291 ERSKEMMSQADLVLVVVNYSEALTNEDESLFRAVQGK--------DFIVIVNKTDLPQGI 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + N + T + QGI +LE AI + I + + N R L +
Sbjct: 343 DMERVAELAAGNRVITTSLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNVRHIGLLTQ 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 403 AGKTIGDAVEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|336115646|ref|YP_004570413.1| tRNA modification GTPase TrmE [Bacillus coagulans 2-6]
gi|335369076|gb|AEH55027.1| tRNA modification GTPase TrmE [Bacillus coagulans 2-6]
Length = 461
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 187/476 (39%), Positives = 277/476 (58%), Gaps = 20/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T +G GA+ IVRLSG A+ I R+F V KK SH +
Sbjct: 3 MDTIAAISTPMG--EGAISIVRLSGENAISIANRLFAGVGGKKLADV-------PSHTIH 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++E + M AP+++TREDVVE+ CHG V + RVL+ L+ GA LA+
Sbjct: 54 YGKIVDPDTAETIEEAMVSVMKAPKTFTREDVVEINCHGGLVAVNRVLQLVLKNGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S LV +R + +E++
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDKAMNVAIGQMEGRLSKLVKKLRQEILEVV 173
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
IE +D+ D++ + ++ ++ + ++E L TA+ K+L+ GL AI+GRPN
Sbjct: 174 AHIEVNIDYPEYDDVEEMTHRMLEERAQYIKNEIEKLLRTAHQGKILREGLSTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 234 VGKSSLLNSLVQENKAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDIVERIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD+I++ +++ + + ED L ++ +I+++NK D
Sbjct: 294 ERSRKALKEADLILLVINSSEPLSPEDKALFEAVE--------GMDVIVILNKWDLPHQV 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + + T VT +G++ LE AI + Q+ G + N R L +
Sbjct: 346 EMESVRQLAQGAKILTTSLVTEEGMEKLEDAIAAMYFEGQMETGDLTYVSNSRHIALLNQ 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
EA+ +++ I+ P+D IDL LG+I G+ + E +L+ +F +FC+GK
Sbjct: 406 ALEAIQDVQNGIQSNTPIDIIQIDLTRTWDLLGEIIGDTVQESLLNQLFSQFCLGK 461
>gi|332687269|ref|YP_004457043.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Melissococcus
plutonius ATCC 35311]
gi|332371278|dbj|BAK22234.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Melissococcus
plutonius ATCC 35311]
Length = 466
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 187/479 (39%), Positives = 281/479 (58%), Gaps = 26/479 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
TIAAI T PPG A+ IVRLSG AV I ++++ KK K + +H
Sbjct: 8 LDTIAAIST----PPGEGAISIVRLSGKDAVKIADKIYQAGNKKLKDVA--------THT 55
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D + VVDEV+ M AP+++T EDVVE+ CHG + + ++L+ L GA L
Sbjct: 56 IHYGHIIDPKKNKVVDEVMVSVMRAPKTFTCEDVVEINCHGGMIVVNKLLQLILHEGARL 115
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQAE V LI +K+ A AL + G S+L+ S+R + +E
Sbjct: 116 AEPGEFTKRAFLNGRIDLSQAEAVMDLIRSKTDKAMSMALNQLDGSLSNLIRSLRQEILE 175
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L ++E +D+ D++ L L+++K ++ + ++ L TA K+L+ GL IVGR
Sbjct: 176 TLAQVEVNIDYPEYDDVEELTTRLLLEKATSVKKQIQQLLMTAQQGKILREGLSTVIVGR 235
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN K E+AIVT++AGTTRD IE + + G+P+ L+DTAGI ET+DIVEKI
Sbjct: 236 PNVGKSSLLNHLLKEEKAIVTDVAGTTRDTIEEYINLRGIPLKLVDTAGIHETEDIVEKI 295
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVE+S AD+I++ ++ + T+ED +LL K+ I+++NK+D
Sbjct: 296 GVEKSRQALQTADLIVLVLNQSEELTNEDQQLLEMTGGLKR--------IILLNKMDLPN 347
Query: 447 SASNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
E + S + + +V + +GI LE I + Q A + N R
Sbjct: 348 QLEKEKLRSFLSDQEELLPVSVLSSEGIDKLEIEIANLFFNGQTEAKDATYLSNTRHIYL 407
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + AL + IE+E+P+D ID+ LG+I G+ + +E+++ +F +FC+GK
Sbjct: 408 LEQALSALDEVIHGIEKEMPVDLVQIDMTRCWDFLGEIVGDSVQDELITQLFSQFCLGK 466
>gi|89100947|ref|ZP_01173794.1| tRNA modification GTPase [Bacillus sp. NRRL B-14911]
gi|89084356|gb|EAR63510.1| tRNA modification GTPase [Bacillus sp. NRRL B-14911]
Length = 461
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 189/476 (39%), Positives = 274/476 (57%), Gaps = 20/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T +G GA+ IVRLSG A I ++++ V K+ + S H +
Sbjct: 3 LDTIAAISTPMG--EGAIAIVRLSGDEAFSIADKLYRGVGGKRISDAAS-------HTIH 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V +EV+ M P+++T+EDVVE+ CHG V + RVL+ L GA LA+
Sbjct: 54 YGHIIDPKTGQVAEEVMVSVMKGPKTFTKEDVVEINCHGGIVSVNRVLQLVLNHGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL ++G S LV +R + +E L
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMEGRLSKLVKRLRQEILETL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
IE +D+ D++ + L+++K + ++E L+T+ K+L+ GL IVGRPN
Sbjct: 174 AHIEVNIDYPEYDDVEEMTHQLLLEKAGFVKGEIEKLLKTSEQGKILREGLSTVIVGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ LLDTAGIRET+DIVE+IGV
Sbjct: 234 VGKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLLDTAGIRETEDIVERIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ V+ D T ED L ++ +I+++NK D
Sbjct: 294 ERSRQVLKEADLILLVVNYSDELTQEDENLFKVVE--------DMDVIVIVNKTDLPQQI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + + + V T + QG+ +LE +I + I AG + N R L +
Sbjct: 346 DMERVRELAAGHRLVTTSLLEDQGVDELEESISSLFFAGSIEAGDMTYVSNTRHIALLNQ 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++ + ++ P+D IDL LG+I GE + + ++ +F +FC+GK
Sbjct: 406 ALNSIEEALNGVDFGTPIDIIQIDLTRTWELLGEIIGESVHDSLIDQLFSQFCLGK 461
>gi|424963536|ref|ZP_18377746.1| tRNA modification GTPase TrmE [Enterococcus faecium P1190]
gi|402948830|gb|EJX66932.1| tRNA modification GTPase TrmE [Enterococcus faecium P1190]
Length = 485
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 193/483 (39%), Positives = 287/483 (59%), Gaps = 35/483 (7%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT--- 146
F TIAAI T PPG A+ IVRLSG AV + +V++ SG+ R +
Sbjct: 28 FDTIAAIST----PPGEGAISIVRLSGDQAVQLADKVYQ-----------SGNKRLSEVP 72
Query: 147 SHVVEYGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAG 205
SH + YG ++D N +VDEV+ M AP+++TRED+VE+ CHG V + ++L+ L G
Sbjct: 73 SHTIHYGHIVDPKSNQLVDEVMVSVMRAPKTFTREDLVEINCHGGIVVVNQILQLLLREG 132
Query: 206 ATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAK 265
A LA+PGEFT RAFLNGR+DLSQAE V LI AK+ A AL + G S+L+ S+R +
Sbjct: 133 ARLAEPGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQE 192
Query: 266 CIELLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
+E L ++E +D+ D++ L L+++K + Q ++ L T+ K+L+ GL AI
Sbjct: 193 ILETLAQVEVNIDYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAI 252
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383
+GRPNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+V
Sbjct: 253 IGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVV 312
Query: 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443
E+IGVERS AD+I++ ++ + T+ED +LL K+ I+++NK D
Sbjct: 313 ERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLEATSGLKR--------IILLNKTD 364
Query: 444 CAPSASNEWNKVGNSF-NDHVFTCAVT-GQGIQDLETAIMKIVGLHQIPAGGRRWAVNQR 501
A E K+ N+ VF+ +V G+ LE+AI + + + N R
Sbjct: 365 LP--AQLEQEKLKKLIENEPVFSISVAKNDGLDRLESAISDLFFSGETGERDATYVSNTR 422
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
L + +L + + I+ +P+D ID+ LG++ G+ + +E+++ +F +FC
Sbjct: 423 HIALLEKASLSLEEVIAGIDSGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFC 482
Query: 562 IGK 564
+GK
Sbjct: 483 LGK 485
>gi|379728126|ref|YP_005320311.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Melissococcus
plutonius DAT561]
gi|376319029|dbj|BAL62816.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Melissococcus
plutonius DAT561]
Length = 466
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 187/479 (39%), Positives = 281/479 (58%), Gaps = 26/479 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
TIAAI T PPG A+ IVRLSG AV I ++++ KK K + +H
Sbjct: 8 LDTIAAIST----PPGEGAISIVRLSGKDAVKIADKIYQAGNKKLKDVA--------THT 55
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D + VVDEV+ M AP+++T EDVVE+ CHG + + ++L+ L GA L
Sbjct: 56 IHYGHIIDPKKNKVVDEVMVSVMRAPKTFTCEDVVEINCHGGMIVVNKLLQLILREGARL 115
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQAE V LI +K+ A AL + G S+L+ S+R + +E
Sbjct: 116 AEPGEFTKRAFLNGRIDLSQAEAVMDLIRSKTDKAMSMALNQLDGSLSNLIRSLRQEILE 175
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L ++E +D+ D++ L L+++K ++ + ++ L TA K+L+ GL IVGR
Sbjct: 176 TLAQVEVNIDYPEYDDVEELTTRLLLEKATSVKKQIQQLLMTAQQGKILREGLSTVIVGR 235
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN K E+AIVT++AGTTRD IE + + G+P+ L+DTAGI ET+DIVEKI
Sbjct: 236 PNVGKSSLLNHLLKEEKAIVTDVAGTTRDTIEEYINLRGIPLKLVDTAGIHETEDIVEKI 295
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVE+S AD+I++ ++ + T+ED +LL K+ I+++NK+D
Sbjct: 296 GVEKSRQALQTADLIVLVLNQSEELTNEDQQLLEMTGGLKR--------IILLNKMDLPN 347
Query: 447 SASNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
E + S + + +V + +GI LE I + Q A + N R
Sbjct: 348 QLEKEKLRSFLSDQEELLPVSVLSSEGIDKLEIKIANLFFNGQTEAKDATYLSNTRHIYL 407
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + AL + IE+E+P+D ID+ LG+I G+ + +E+++ +F +FC+GK
Sbjct: 408 LEQALSALDEVIHGIEKEMPVDLVQIDMTRCWDFLGEIVGDSVQDELITQLFSQFCLGK 466
>gi|425057344|ref|ZP_18460767.1| tRNA modification GTPase TrmE [Enterococcus faecium 504]
gi|403040668|gb|EJY51728.1| tRNA modification GTPase TrmE [Enterococcus faecium 504]
Length = 485
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 193/482 (40%), Positives = 285/482 (59%), Gaps = 33/482 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT--- 146
F TIAAI T PPG A+ IVRLSG AV + +V++ SG+ R +
Sbjct: 28 FDTIAAIST----PPGEGAISIVRLSGDQAVQLADKVYQ-----------SGNKRLSEVP 72
Query: 147 SHVVEYGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAG 205
SH + YG ++D N +VDEV+ M AP+++TREDVVE+ CHG V + ++L+ L G
Sbjct: 73 SHTIHYGHIVDPKSNQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLREG 132
Query: 206 ATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAK 265
A LA+PGEFT RAFLNGR+DLSQAE V LI AK+ A AL + G S+L+ S+R +
Sbjct: 133 ARLAEPGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQE 192
Query: 266 CIELLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
+E L ++E +D+ D++ L L+++K + Q ++ L T+ K+L+ GL AI
Sbjct: 193 ILETLAQVEVNIDYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAI 252
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383
+GRPNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+V
Sbjct: 253 IGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVV 312
Query: 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443
E+IGVERS AD+I++ ++ + T+ED +LL K+ I+++NK D
Sbjct: 313 ERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLEATSGLKR--------IILLNKTD 364
Query: 444 CAPSASNEWNKVGNSFNDHVFTCAVT-GQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQ 502
E K N+ VF+ +V G+ LE+AI + + + N R
Sbjct: 365 LPVQLEQEKLKKLIE-NEPVFSISVAKNDGLDRLESAISDLFFSGETGERDATYVSNTRH 423
Query: 503 CEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCI 562
L + +L + + I+ +P+D ID+ LG++ G+ + +E+++ +F +FC+
Sbjct: 424 IALLEKASLSLEEVIAGIDAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCL 483
Query: 563 GK 564
GK
Sbjct: 484 GK 485
>gi|295398145|ref|ZP_06808194.1| tRNA modification GTPase TrmE [Aerococcus viridans ATCC 11563]
gi|294973664|gb|EFG49442.1| tRNA modification GTPase TrmE [Aerococcus viridans ATCC 11563]
Length = 463
Score = 318 bits (816), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 183/476 (38%), Positives = 282/476 (59%), Gaps = 21/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI ++ G GA+GIVRLSG A+ I +V+K +KK SH +
Sbjct: 6 FDTIAAISSAPG--EGAIGIVRLSGDDALAIADKVYKLGQKKLSTQD--------SHTIH 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G +DEV+ M P+++TRED+VE+ HG V RVL L GATLA+
Sbjct: 56 YGHIVDPKDGQEIDEVMVSVMREPKTFTREDIVEINTHGGIVATNRVLELVLREGATLAE 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE V LI AK+ + D A+ + G S+L+ ++R + L
Sbjct: 116 PGEFTKRAFINGRIDLTQAEAVMDLIRAKTDRSMDLAVKQLDGKLSNLIENLRQDILNTL 175
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L L+ +K + ++ L TA K+L+ G+ AIVGRPN
Sbjct: 176 AQVEVNIDYPEYDDVEEMTLKLLGEKTTIIKDRIDGLLSTAKQGKILRDGISTAIVGRPN 235
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLNA + E+AIVT+I GTTRD +E + + GVP+ L+DTAGIR+T+D+VE+IGV
Sbjct: 236 VGKSSLLNALLREEKAIVTDIEGTTRDTVEEYINIRGVPLKLVDTAGIRDTEDVVERIGV 295
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + A+++++ ++ + T+ D ELL+ Q +K+ I+++NKID
Sbjct: 296 ERSKKALMEAELVLLLLNQSEALTAGDRELLSLTQDHKR--------IIIMNKIDLPSQL 347
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E ++ + T +T +GI LE I Q + N R + L +
Sbjct: 348 LKESLLEWVEEDEIIATSMMTQEGIDALEEKIADYFFSGQSGEKDATYVSNARHIDLLQK 407
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L +++ I+ +P+D ID A LG+I GE+ +E+L+ +F +FC+GK
Sbjct: 408 ASQSLDEVRNGIDMGMPVDLIQIDFTRAWEILGEIIGENAPDELLTQLFSQFCLGK 463
>gi|294501987|ref|YP_003565687.1| tRNA modification GTPase TrmE [Bacillus megaterium QM B1551]
gi|294351924|gb|ADE72253.1| tRNA modification GTPase TrmE [Bacillus megaterium QM B1551]
Length = 462
Score = 318 bits (816), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 189/478 (39%), Positives = 280/478 (58%), Gaps = 24/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG A+ I R+FK V K+ S H +
Sbjct: 4 FDTIAAISTPMG--EGAIAIVRLSGEEAITIADRIFKSVSNKRLTDVAS-------HTIH 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + VV+EV+ M P+++TRED++E+ CHG V + RVL+ + GA LA+
Sbjct: 55 YGHIVDPKTEQVVEEVMLSIMKGPKTFTREDIIEINCHGGIVSVNRVLQLVIANGARLAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S LV +R + +E L
Sbjct: 115 PGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMNMAIGQMEGRLSKLVRHLRQEILETL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + ++++K + Q+++ L+T++ K+L+ GL I+GRPN
Sbjct: 175 AHVEVNIDYPEYDDVEEMTHQVLIEKASNVRQEIDKLLQTSHQGKILREGLATVIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 235 VGKSSLLNSLVQDAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD+I++ ++ + T ED +L ++ +I+++NK D
Sbjct: 295 ERSRQYLKEADLILLVLNFNEELTDEDKKLFEAVK--------GMDVIVIVNKTDLEQKI 346
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ E +V DH V T + QGI LE AI + I + + N R L
Sbjct: 347 NLE--EVQQFAGDHPVVTTSLLQEQGIDQLEEAIAALFFGGTIESQDLTYLSNTRHIALL 404
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + A+ + IE +P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 405 TQARGAIDEAITGIESGVPIDIVQIDLTRTWELLGEIIGDAVHESLIDQLFSQFCLGK 462
>gi|228994203|ref|ZP_04154103.1| tRNA modification GTPase mnmE [Bacillus pseudomycoides DSM 12442]
gi|229000273|ref|ZP_04159842.1| tRNA modification GTPase mnmE [Bacillus mycoides Rock3-17]
gi|229007799|ref|ZP_04165384.1| tRNA modification GTPase mnmE [Bacillus mycoides Rock1-4]
gi|228753459|gb|EEM02912.1| tRNA modification GTPase mnmE [Bacillus mycoides Rock1-4]
gi|228759605|gb|EEM08582.1| tRNA modification GTPase mnmE [Bacillus mycoides Rock3-17]
gi|228765655|gb|EEM14309.1| tRNA modification GTPase mnmE [Bacillus pseudomycoides DSM 12442]
Length = 458
Score = 318 bits (816), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 181/476 (38%), Positives = 283/476 (59%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G GA+ IVR+SG A++ V R+FK G +SH +
Sbjct: 3 FDTIAAISTALG--EGAIAIVRVSGEDAIEKVNRIFK----------GKDLTAVSSHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + V++EV+ M APR++TRE++VE+ CHG V + +VL+ L G LA+
Sbjct: 51 YGHIVDLDTDQVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQLILAQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S L+ +R + +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSKLIGRLRQEILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + N++++K + +++ LET+ K+L+ G+ AI+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHNILIEKATHVRGEIKKILETSKQGKILREGIATAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 231 VGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ V+ + T+ED +L ++ I+++NK D
Sbjct: 291 ERSKEMMGQADLVLIVVNYSEALTNEDEDLFRAVRGK--------DFIVIVNKTDLPKQI 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ N + T + +G+ +LE AI + I + + N R L +
Sbjct: 343 DMKRVTELAGKNRMITTSLIEEKGVDELEKAIADLFFEGTIESADMTYVSNARHIGLLTQ 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++ + +IE +P+D IDL LG+I+G+ + E ++ +F +FC+GK
Sbjct: 403 AEKTIGDAIEAIENGVPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458
>gi|399048547|ref|ZP_10740032.1| tRNA modification GTPase TrmE [Brevibacillus sp. CF112]
gi|433543008|ref|ZP_20499423.1| tRNA modification GTPase [Brevibacillus agri BAB-2500]
gi|398053609|gb|EJL45783.1| tRNA modification GTPase TrmE [Brevibacillus sp. CF112]
gi|432185682|gb|ELK43168.1| tRNA modification GTPase [Brevibacillus agri BAB-2500]
Length = 458
Score = 318 bits (816), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 185/475 (38%), Positives = 279/475 (58%), Gaps = 21/475 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAA+ T +G G + ++R+SG A+D+V +++K K++ S+ SH +
Sbjct: 3 FDTIAAVATPMG--EGGIAVIRVSGAEAIDVVDKIYKG---KQRLST------VDSHTIH 51
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG + D G V+EVL M APR++TREDVVE+ CHG V + +VL L+ GA LA+
Sbjct: 52 YGHLYDPETGERVEEVLVSVMKAPRTFTREDVVEVNCHGGIVSVEKVLELILDNGARLAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A AL ++G S L+ +R IE +
Sbjct: 112 PGEFTKRAFLNGRVDLSQAEAVIDLIRAKTDRAMKVALNQVEGKLSRLIRQLRQNLIEAM 171
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IE LD+ + ++ N + K + +++ L+TA K+L+ GL AI+GRPNV
Sbjct: 172 AHIEVTLDYPEHDVEEFTQNFLRGKCQEVKGEIQRLLQTAKQGKILREGLSTAIIGRPNV 231
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN+ + E+AIVT++AGTTRDVIE V V GVP+ L+DTAGIR+T+DIVEKIGVE
Sbjct: 232 GKSSLLNSLVQEEKAIVTDVAGTTRDVIEEYVNVRGVPLRLIDTAGIRDTEDIVEKIGVE 291
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S + AD++++ V+ + T++D + +I+++NK D
Sbjct: 292 KSRQLLQKADLVLLVVNYNEPLTADDYAIF--------EAAKGFQVIVIVNKFDLPQKVD 343
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
E K + T A +GI LE AI I ++ + N R + L +
Sbjct: 344 LEEIKRHFPQQPLIMTSAREEKGIDLLEQAIGDIFFSGRVQQDDLTYVSNARHIQLLRQA 403
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++A+ + I++ +P+D ID++ + LG++ GE + E+++ IF +FC+GK
Sbjct: 404 EKAIDEALAGIDDLMPVDMIQIDIKKSWELLGEVIGESVGEDLIDQIFSQFCLGK 458
>gi|257899265|ref|ZP_05678918.1| tRNA modification GTPase mnmE [Enterococcus faecium Com15]
gi|431081772|ref|ZP_19495862.1| tRNA modification GTPase mnmE [Enterococcus faecium E1604]
gi|431116721|ref|ZP_19497987.1| tRNA modification GTPase mnmE [Enterococcus faecium E1613]
gi|431592405|ref|ZP_19521641.1| tRNA modification GTPase mnmE [Enterococcus faecium E1861]
gi|431740583|ref|ZP_19529495.1| tRNA modification GTPase mnmE [Enterococcus faecium E2039]
gi|257837177|gb|EEV62251.1| tRNA modification GTPase mnmE [Enterococcus faecium Com15]
gi|430565704|gb|ELB04850.1| tRNA modification GTPase mnmE [Enterococcus faecium E1604]
gi|430568501|gb|ELB07548.1| tRNA modification GTPase mnmE [Enterococcus faecium E1613]
gi|430592030|gb|ELB30057.1| tRNA modification GTPase mnmE [Enterococcus faecium E1861]
gi|430602953|gb|ELB40497.1| tRNA modification GTPase mnmE [Enterococcus faecium E2039]
Length = 465
Score = 318 bits (816), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 192/486 (39%), Positives = 286/486 (58%), Gaps = 41/486 (8%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT--- 146
F TIAAI T PPG A+ IVRLSG AV + +V+ SG+ R +
Sbjct: 8 FDTIAAIST----PPGEGAISIVRLSGDQAVQLADKVYH-----------SGNKRLSEVP 52
Query: 147 SHVVEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAG 205
SH + YG ++D + +VDEV+ M AP+++TREDVVE+ CHG V + ++L+ L G
Sbjct: 53 SHTIHYGHIVDPKSDQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLREG 112
Query: 206 ATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAK 265
A LA+PGEFT RAFLNGR+DLSQAE V LI AK+ A AL + G S+L+ S+R +
Sbjct: 113 ARLAEPGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQE 172
Query: 266 CIELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
+E L ++E +D+ D++ L L+++K + Q ++ L T+ K+L+ GL AI
Sbjct: 173 ILETLAQVEVNIDYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAI 232
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383
+GRPNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+V
Sbjct: 233 IGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVV 292
Query: 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443
E+IGVERS AD+I++ ++ + T+ED +LL K+ I+++NK D
Sbjct: 293 ERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLEATSGLKR--------IILLNKTD 344
Query: 444 CAPSAS----NEWNKVGNSFNDHVFTCAVT-GQGIQDLETAIMKIVGLHQIPAGGRRWAV 498
N+W + N+ VF+ +V G+ LE+AI + + +
Sbjct: 345 LPAQLEQEKLNKWIE-----NEPVFSISVAKNDGLDRLESAISDLFFSGETGERDATYVS 399
Query: 499 NQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFG 558
N R L + +L + + I+ +P+D ID+ LG++ G+ + +E+++ +F
Sbjct: 400 NTRHIALLEKASLSLEEVIAGIDAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFS 459
Query: 559 KFCIGK 564
+FC+GK
Sbjct: 460 QFCLGK 465
>gi|257866268|ref|ZP_05645921.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC30]
gi|257873216|ref|ZP_05652869.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC10]
gi|257800226|gb|EEV29254.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC30]
gi|257807380|gb|EEV36202.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC10]
Length = 481
Score = 318 bits (816), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 191/480 (39%), Positives = 285/480 (59%), Gaps = 29/480 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVRLSG A+ I R+F+ K + SH
Sbjct: 24 FDTIAAIST----PPGEGAISIVRLSGEEAIAIADRIFQAGTKTLAQVP--------SHT 71
Query: 150 VEYGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D N ++DEV+ M PR++TREDVVE+ CHG V + ++L+ L GA L
Sbjct: 72 IHYGHIIDPEENRLMDEVMLSVMKKPRTFTREDVVEINCHGGIVVVNQLLQLVLRQGARL 131
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ + G S L+ ++R + +E
Sbjct: 132 AEPGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMNLAVNQLDGNLSHLIRTLRQEILE 191
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L ++E +D+ D++ L L+++K + ++ L TA K+L+ GL AI+GR
Sbjct: 192 TLAQVEVNIDYPEYDDVEELTTCLLLEKATMVKGQIQALLATAQQGKILREGLSTAIIGR 251
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+DIVEKI
Sbjct: 252 PNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVEKI 311
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS A++I++ ++ +G T ED +LL +++ I+++NK D P
Sbjct: 312 GVERSRKALAEAELILLVLNQSEGLTQEDKQLLELTAGSRR--------IILLNKTDLEP 363
Query: 447 S-ASNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCE 504
A+ E + + ++ +F+ +V T +G+ LE AI + + + N R
Sbjct: 364 KLATAELAQY--AADEPIFSVSVLTSEGLDQLEQAIADLFFGGKTTDKDASYLSNTRHIA 421
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L ++L + IE +P+D ID+ LG++ G+ + +E+++ +F +FC+GK
Sbjct: 422 LLENAVQSLSEVIQGIEAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 481
>gi|357014898|ref|ZP_09079897.1| MnmE [Paenibacillus elgii B69]
Length = 458
Score = 318 bits (816), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 194/473 (41%), Positives = 270/473 (57%), Gaps = 21/473 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T +G G + ++R+SG AV + ++F K + PT H V YG
Sbjct: 5 TIAAIATPMG--EGGIAVIRVSGDEAVPVCDKIFAGKSKLTEV--------PT-HTVNYG 53
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+ D G V+E L M APRS+T+EDVVE+ CHG V +R+VL LE GA LA+PG
Sbjct: 54 YIHDPETGARVEESLVTVMRAPRSFTKEDVVEISCHGGFVSVRKVLDLLLEHGARLAEPG 113
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQAE V LI AKS A AL +G S + +R + +EL+
Sbjct: 114 EFTKRAFLNGRIDLSQAEAVIDLIRAKSDRAFRIALKQSEGSLSKTIKELRHRLVELMAH 173
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IE +D+ + ++ + + +K D+E L TA K+L+ GL AIVGRPNVGK
Sbjct: 174 IEVNIDYPEHDVEEMTNAFIKEKCAGALSDIERMLTTAQQGKILREGLVTAIVGRPNVGK 233
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLN ++ ERAIVTEIAGTTRDV+E V V G+P+ LLDTAGIRET D+VE+IGVE+S
Sbjct: 234 SSLLNTLAQEERAIVTEIAGTTRDVVEEYVHVNGIPLKLLDTAGIRETSDLVEQIGVEKS 293
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
AD+I+ + + ++ L+++++ + +I +INK D E
Sbjct: 294 RQALSDADLILFVCNGAEPLQPDEYVLIDQLKDRQ--------VIAIINKQDLPQLIEEE 345
Query: 452 WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKE 511
K + V + QGI DLE AI I Q+ + + N R L + +
Sbjct: 346 VLKDAFGEDRVVRMSLLAQQGIADLEKAIASIFFSGQVESSDLTYVSNARHIHLLKQARS 405
Query: 512 ALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL + E +P+D ID+R+A LG+I G+ +SE ++ IF +FC+GK
Sbjct: 406 ALTEAHEAAEAFVPIDMIQIDIRNAWEHLGEIIGDSVSESLIDQIFSQFCLGK 458
>gi|392956547|ref|ZP_10322074.1| tRNA modification GTPase TrmE [Bacillus macauensis ZFHKF-1]
gi|391877529|gb|EIT86122.1| tRNA modification GTPase TrmE [Bacillus macauensis ZFHKF-1]
Length = 458
Score = 318 bits (815), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 191/478 (39%), Positives = 277/478 (57%), Gaps = 27/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSW-RPTSHVV 150
+ TIAAI T +G GA+ IVRLSG AV I ++K G S T+H +
Sbjct: 3 YDTIAAISTPMG--EGAIAIVRLSGEQAVTIADSIYK----------GKQSLCDVTTHTI 50
Query: 151 EYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG ++D V+EV+ M APR++TREDVVE+ CHG V + RVL+ L GA LA
Sbjct: 51 HYGKLMDPATDEAVEEVMMSVMRAPRTFTREDVVEINCHGGLVSVNRVLQLVLREGARLA 110
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL ++G S LV+S+R +E
Sbjct: 111 EPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVALNQMEGRLSKLVSSLRQTLLET 170
Query: 270 LTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+ +E +D+ + + + L+ +K+H + +V L TA K+L+ GL AI+GRPN
Sbjct: 171 IAHVEVNIDYPEYDAEEMTHQLLQEKLHEVKNEVATLLTTAQQGKILREGLSTAIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSL+NA + +AIVT++AGTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 231 VGKSSLMNALVQENKAIVTDVAGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
E+S V AD+I++ ++ + T ED LL ++ I++INK D
Sbjct: 291 EKSRKVLKEADLILLVLNNNERLTQEDENLLAAVK--------GLNAIIIINKTDLESHI 342
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ +++ ++H + + +G+ LE I K+ + A + N R L
Sbjct: 343 --DRDRLQQLSDNHPIITVSLLQEEGVDRLEEGIAKLFFAGGMEAQDMTYVSNSRHIALL 400
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++ IE LP+D ID+ A LG+I G+ +SE ++ +F +FC+GK
Sbjct: 401 QQASGSIEEALHGIEASLPIDMIQIDITRAWEILGEIVGDTVSESLIDQLFSQFCLGK 458
>gi|393198836|ref|YP_006460678.1| GTPase [Solibacillus silvestris StLB046]
gi|406667890|ref|ZP_11075641.1| tRNA modification GTPase MnmE [Bacillus isronensis B3W22]
gi|327438167|dbj|BAK14532.1| predicted GTPase [Solibacillus silvestris StLB046]
gi|405384297|gb|EKB43745.1| tRNA modification GTPase MnmE [Bacillus isronensis B3W22]
Length = 461
Score = 318 bits (815), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 189/478 (39%), Positives = 282/478 (58%), Gaps = 24/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG AV I ++FK K+ + H +
Sbjct: 3 FDTIAAISTPMG--EGAIAIVRLSGDEAVAIADKIFKSPNHKRLTEVAT-------HTIH 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + VV+EV+ M P+++TREDVVE+ CHG V + RVL+ L GA LA+
Sbjct: 54 YGHLIDPKTDEVVEEVMLSLMRGPKTFTREDVVEINCHGGIVSVNRVLQLVLRYGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL + G S L+TS+R +E L
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMDGKLSRLITSLRQALLETL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + + ++++K + +++ L+T++ K+L+ GL I+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTIPVLLEKCGWVREEIIKLLQTSSQGKILREGLSTVILGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + +AIVT+IAGTTRD+IE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 234 VGKSSLLNSLVQENKAIVTDIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD+I++ ++ + T ED L IQ + I+V+NK D
Sbjct: 294 ERSREALKDADLILLVLNYGEELTEEDERLFETIQ--------AMDYIVVVNKTDIERKI 345
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ N+V H V T + +G+ +LE AI + Q+ A + N R L
Sbjct: 346 --DLNRVHELAGKHRVVTTSLLKEEGVIELEEAIAALFFEGQVEANDLTYVSNARHIALL 403
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++ + ++ E +P+D ID+ LG+I G+ + E +++ +F +FC+GK
Sbjct: 404 HQAQQVIEDALAAAESGVPVDMIQIDVTRTWEILGEIIGDTVQESLINQLFSQFCLGK 461
>gi|365155927|ref|ZP_09352269.1| tRNA modification GTPase mnmE [Bacillus smithii 7_3_47FAA]
gi|363627852|gb|EHL78696.1| tRNA modification GTPase mnmE [Bacillus smithii 7_3_47FAA]
Length = 461
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 200/478 (41%), Positives = 278/478 (58%), Gaps = 24/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T +G GA+ IVRLSGP AV I RVF KK PT H +
Sbjct: 3 IDTIAAISTPLG--EGAIAIVRLSGPDAVSIADRVFHSPNGKKLADV------PT-HTIH 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG + D + GNVV+EV+ M AP+++TREDVVE+ CHG V + RVL+ L +GA +A+
Sbjct: 54 YGQLHDPQTGNVVEEVMVSVMRAPKTFTREDVVEINCHGGLVSVNRVLQLVLNSGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL I+G S L+ +R + +E+L
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDKAMNVALNQIEGRLSKLIRKLRQEILEVL 173
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + L++ K + Q++E L T+ K+L+ GL I+GRPN
Sbjct: 174 AHVEVNIDYPEYDDVEEMTHELLLKKSLYVKQEIEKLLRTSQQGKILREGLSTVIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLNA +AIVT I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 234 VGKSSLLNALVHENKAIVTNIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ + T ED +L +I+++NK D
Sbjct: 294 ERSRQVLKEADLILLVLNYSEELTPEDEKLF--------EAAKGMDVIVIVNKTDLPQKI 345
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
E +V N+H V T + QGI +LE AI + I + + N R L
Sbjct: 346 DME--RVQKLANNHKIVTTSLLEEQGIDELEEAIASLFFEGSIESQDATYVSNSRHIALL 403
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ A+ + +E +P+D IDL LG+I G+ + E +++ +F +FC+GK
Sbjct: 404 NQALNAINDAIAGVEASMPVDMVQIDLTRTWELLGEIIGDSVHESLINQLFSQFCLGK 461
>gi|295707338|ref|YP_003600413.1| tRNA modification GTPase TrmE [Bacillus megaterium DSM 319]
gi|294804997|gb|ADF42063.1| tRNA modification GTPase TrmE [Bacillus megaterium DSM 319]
Length = 462
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 188/478 (39%), Positives = 280/478 (58%), Gaps = 24/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG A+ I R+FK V K+ S H +
Sbjct: 4 FDTIAAISTPMG--EGAIAIVRLSGEEAITIADRIFKSVSNKRLTDVAS-------HTIH 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + VV+EV+ M P+++TRED++E+ CHG V + RVL+ + GA LA+
Sbjct: 55 YGHIVDPKTEQVVEEVMLSIMKGPKTFTREDIIEINCHGGIVSVNRVLQLVIANGARLAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S LV +R + +E L
Sbjct: 115 PGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMNMAIGQMEGRLSKLVRHLRQEILETL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + ++++K + Q+++ L+T++ K+L+ GL I+GRPN
Sbjct: 175 AHVEVNIDYPEYDDVEEMTHQVLIEKASNVRQEIDKLLQTSHQGKILREGLATVIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 235 VGKSSLLNSLVQDAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD+I++ ++ + T ED +L ++ +I+++NK D
Sbjct: 295 ERSRQYLKEADLILLVLNFNEELTDEDKKLFEAVK--------GMDVIVIVNKTDLEQKI 346
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ E +V DH V T + QG+ LE AI + I + + N R L
Sbjct: 347 NLE--EVQQFAGDHPIVTTSLLQEQGVDQLEEAIAALFFGGTIESQDLTYLSNTRHIALL 404
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + A+ + IE +P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 405 TQARGAIDEAITGIESGVPIDIVQIDLTRTWELLGEIIGDAVHESLIDQLFSQFCLGK 462
>gi|225181151|ref|ZP_03734597.1| tRNA modification GTPase TrmE [Dethiobacter alkaliphilus AHT 1]
gi|225168120|gb|EEG76925.1| tRNA modification GTPase TrmE [Dethiobacter alkaliphilus AHT 1]
Length = 460
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 191/478 (39%), Positives = 277/478 (57%), Gaps = 29/478 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFK---PVKKKKKKSSGSGSWRPTSHVV 150
TIAAI T +G G +GIVR+SGP A DI +F+ PV+ P SH +
Sbjct: 5 TIAAIATPVG--EGGIGIVRISGPQAKDIGKELFRFHRPVQN------------PQSHKL 50
Query: 151 EYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG V+ G V+DE L M +PR+YT EDVVE+ CHG + L++ L L+ GA LA+
Sbjct: 51 YYGHVIGEGGEVLDEALLAFMHSPRTYTTEDVVEINCHGGIMPLKKTLERTLQLGARLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
GEFT RAFLNGR+DL+QAE V ++I A++ A ++A +QG S V +R + + +L
Sbjct: 111 AGEFTQRAFLNGRIDLAQAEAVIQIIRARTETAMQLSVAQLQGRLSQKVGEIRQQLLSVL 170
Query: 271 TEIEARLDFDDEMPPLNLNLVM--DKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+EA +DF + ++ V + ++++ L+TA+ ++L+ GL+ AIVGRPN
Sbjct: 171 AHMEASIDFPEHQDVEDVAFVQLREAAELAHKEIDLLLQTADKGRILREGLRTAIVGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLNA K +RAIVT+I GTTRDV+E SV + G+ +T++DTAGIRET D VEK+GV
Sbjct: 231 VGKSSLLNALLKEQRAIVTDIPGTTRDVLEESVNLGGIALTMVDTAGIRETTDTVEKMGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD+++ + A D T+ED ELL P+I+++NK D S
Sbjct: 291 ERSREALGQADLVLYVLDASDDLTAEDIELLQ--------AAGEKPLIVIVNKTDLVSSP 342
Query: 449 SNEWNKVGNSF--NDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
++ K+ + V V +G+Q+LE AI+ +V + + R + L
Sbjct: 343 ADVTTKLHSELASVPVVPMSVVENRGLQELEEAIVSLVFQGDVKPSQSAMVTSARHKDAL 402
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
R+ L + S++E +D IDL A ALG+I+GE + ++ IF FCIGK
Sbjct: 403 SRSLTFLQDMLSALESGFAIDLLAIDLHSALDALGEITGETVGADLADEIFSAFCIGK 460
>gi|333980899|ref|YP_004518844.1| tRNA modification GTPase mnmE [Desulfotomaculum kuznetsovii DSM
6115]
gi|333824380|gb|AEG17043.1| tRNA modification GTPase mnmE [Desulfotomaculum kuznetsovii DSM
6115]
Length = 461
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 205/483 (42%), Positives = 288/483 (59%), Gaps = 38/483 (7%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT-SHVVEY 152
TIAAI T +G GA+GIVR+SGP AV I ++F S WR SH + Y
Sbjct: 5 TIAAIATPLG--EGAIGIVRVSGPEAVAIAEKLFV--------SRTGVDWRKQGSHRLFY 54
Query: 153 GVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
G+V+D G VDEVL M APR++TREDVVE CHG V LRR+L L+ GA LA+P
Sbjct: 55 GLVVDPATGQPVDEVLLGVMYAPRTFTREDVVEFNCHGGIVPLRRILELVLQHGARLAEP 114
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGRLDL+QAE++ +I AK+ A A++ + G SS V + + + + L+
Sbjct: 115 GEFTRRAFLNGRLDLAQAESILDIIRAKTEAGLAVAMSLLAGELSSRVRAFQDRLLGLVA 174
Query: 272 EIEARLDFDDE-MPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
++EA +DF +E + +++ + A+ D+E L A Y K+ + GL+ IVGRPNVG
Sbjct: 175 QVEASIDFPEEGIEEATREDMVESVRAIMGDLEELLRQARYGKVYREGLRTVIVGRPNVG 234
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLN+ + +RAIVTEI GTTRD+IE V + G+P+ L DTAG+R+TDDIVE+IGVER
Sbjct: 235 KSSLLNSLLREKRAIVTEIPGTTRDIIEEVVNIRGIPIRLADTAGLRKTDDIVERIGVER 294
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S + AD++++ + A G T ED +L ++ I+++NK D +
Sbjct: 295 SRDLVKMADLVLVVLDASTGLTPEDRSILELVREQTG--------IILVNKSDIGDGEAL 346
Query: 451 EWNKVGNSFNDH-VFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+V F D V +V TGQG+ +E AI +++ GG+ A +Q +R
Sbjct: 347 -ARQVTPLFPDKPVQVISVKTGQGLAQVEEAIERMI------LGGQAVA-SQLPLVSHVR 398
Query: 509 TKEALVRLKSSIEEELP-------LDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
K+AL R ++E L LD IDLR A ALG+I+G ++E+++ IF FC
Sbjct: 399 HKQALARCYEHLQEVLRALSAGENLDLVAIDLRAAWEALGEITGTTVAEDIIDRIFRDFC 458
Query: 562 IGK 564
IGK
Sbjct: 459 IGK 461
>gi|257875886|ref|ZP_05655539.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC20]
gi|257810052|gb|EEV38872.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC20]
Length = 481
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 190/480 (39%), Positives = 284/480 (59%), Gaps = 29/480 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVRLSG A+ I R+F+ K + SH
Sbjct: 24 FDTIAAIST----PPGEGAISIVRLSGEKAIAIADRIFQAGTKTLAQVP--------SHT 71
Query: 150 VEYGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D N ++DEV+ M PR++TREDVVE+ CHG V + ++L+ L GA L
Sbjct: 72 IHYGHIVDPEENRLMDEVMLSVMKKPRTFTREDVVEINCHGGIVVVNQLLQLVLRQGARL 131
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ + G S L+ ++R + +E
Sbjct: 132 AEPGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMNLAVNQLDGNLSHLIRTLRQEILE 191
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L ++E +D+ D++ L L+++K + ++ L TA K+L+ GL AI+GR
Sbjct: 192 TLAQVEVNIDYPEYDDVEELTTRLLLEKATMVKGQIQALLATAQQGKILREGLSTAIIGR 251
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VEKI
Sbjct: 252 PNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVEKI 311
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS A++I++ ++ +G T ED +LL +++ I+++NK D P
Sbjct: 312 GVERSRKALAEAELILLVLNQSEGLTQEDKQLLELTAGSRR--------IILLNKTDLEP 363
Query: 447 S-ASNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCE 504
A E + + ++ +F+ +V T +G+ LE AI + + + N R
Sbjct: 364 KLAPAELAQY--AADEPIFSVSVLTSEGLDQLEQAIADLFFGGKTTDKDASYLSNTRHIA 421
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L ++L + IE +P+D ID+ LG++ G+ + +E+++ +F +FC+GK
Sbjct: 422 LLENAVQSLSEVIQGIEAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 481
>gi|87300820|ref|ZP_01083662.1| tRNA modification GTPase [Synechococcus sp. WH 5701]
gi|87284691|gb|EAQ76643.1| tRNA modification GTPase [Synechococcus sp. WH 5701]
Length = 394
Score = 318 bits (814), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 182/408 (44%), Positives = 263/408 (64%), Gaps = 23/408 (5%)
Query: 160 GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAF 219
G +DE L + M APRS+TREDVVEL CHG + + RVL L +GA A+PGEF+ RAF
Sbjct: 7 GERLDEALLLLMKAPRSFTREDVVELHCHGGLIAVARVLELVLLSGARRARPGEFSQRAF 66
Query: 220 LNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDF 279
LNGRLDL++AE + LI+A+S AA ALAG+ GG ++++R + ++ L E+EAR+DF
Sbjct: 67 LNGRLDLTRAEAISDLITARSRRAAQLALAGLDGGLQRRISALRERLLDQLAELEARVDF 126
Query: 280 DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWS 339
++++PPL+ ++ ++ A+ +++ + A+ +LL+ GL++AI+GRPNVGKSSLLNA S
Sbjct: 127 EEDLPPLDPEALVAELEAVRLELQVLVAEASVGQLLREGLKVAIIGRPNVGKSSLLNALS 186
Query: 340 KSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGAD 399
+ ERAIVTE+ GTTRD++E+ + + GVP+TLLDTAGIR TDD VE++G+ERS AD
Sbjct: 187 RRERAIVTELPGTTRDLLESELVLQGVPLTLLDTAGIRPTDDPVERLGIERSRQALAAAD 246
Query: 400 VIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSF 459
+++ V +GWT D+EL ++ + P ++V NK D A A
Sbjct: 247 AVLLLVDLAEGWTQADAELHAQVLAG-------VPSLVVGNKADRAAGAP--------PA 291
Query: 460 NDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSS 519
V A+TG G++ L A++ G H + G A+N RQ + A L S
Sbjct: 292 QVDVVISALTGSGLEALAEALLSRCG-HSL-GQGLEVALNVRQRDL---AAAAATSLDGS 346
Query: 520 IEEE---LPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+E LP DFWTIDLR AA +LG+I+GE+++E VL +F +FCIGK
Sbjct: 347 LEAAAAGLPWDFWTIDLRQAARSLGEITGEEVNEAVLDRVFSRFCIGK 394
>gi|147679252|ref|YP_001213467.1| tRNA modification GTPase TrmE [Pelotomaculum thermopropionicum SI]
gi|189036204|sp|A5CY46.1|MNME_PELTS RecName: Full=tRNA modification GTPase MnmE
gi|146275349|dbj|BAF61098.1| predicted GTPase [Pelotomaculum thermopropionicum SI]
Length = 459
Score = 317 bits (813), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 186/474 (39%), Positives = 278/474 (58%), Gaps = 20/474 (4%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
TIAAI T IG G +GIVR+SGP AV + + F K+K +GS H + Y
Sbjct: 4 DTIAAISTPIG--EGGIGIVRISGPDAVKVAKKFF-LTKRKDWDQAGS-------HRLIY 53
Query: 153 GVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
G V DR GN+VDEVL M APR+YTREDVVE+ CHG V LR+VL L GA LA+PG
Sbjct: 54 GHVFDREGNIVDEVLLSFMRAPRTYTREDVVEINCHGGIVPLRKVLELALANGARLAEPG 113
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EF+ RAFLNGRLDL+QAE+V +I +K+ A A++ ++G S V ++ + + LL +
Sbjct: 114 EFSKRAFLNGRLDLAQAESVIDIIRSKTEAGLRVAVSQLRGDLSRKVEDLQGRLLGLLAQ 173
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
+EA +DF +D++ + ++ + ++++ + A K+ + G+ I+GRPNVGK
Sbjct: 174 VEANIDFPEDDLEEATVEDILRSGEDLIEEIKEIVRRAEAGKIYREGISTVIIGRPNVGK 233
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLNA + RAIVT+I GTTRD+IE + + G+P+ ++DTAG+RET D VE+IGVE++
Sbjct: 234 SSLLNALLRENRAIVTDIPGTTRDIIEEYINIRGIPLKIIDTAGLRETGDAVERIGVEKA 293
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDC-APSASN 450
AD++++ + A G T ED ++ ++ K +I ++NK D S+
Sbjct: 294 REAVEQADLVLLVLDAARGLTEEDYAIIEKVGGKK--------VIFIVNKADVREKKISS 345
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
E ++ A+ G G+ LE I+++V Q+ N R + R
Sbjct: 346 EGAARIAGGRPVLWISALEGTGLDKLEEKIVEMVMGGQVYPKDELIISNTRHRMAMERAA 405
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ L S I + +P+D IDLR A +LG+I+G ++E+++ IF FCIGK
Sbjct: 406 DHLAEAVSGIRQNVPVDVVAIDLRAAWESLGEITGTTVTEDLIDRIFADFCIGK 459
>gi|325294918|ref|YP_004281432.1| tRNA modification GTPase mnmE [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065366|gb|ADY73373.1| tRNA modification GTPase mnmE [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 463
Score = 317 bits (813), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 194/476 (40%), Positives = 288/476 (60%), Gaps = 25/476 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T IG GA+GIVR+SG ++ I+ +F+ GS + + + YG
Sbjct: 8 TIAAIGTPIG--KGAIGIVRISGKDSLKILKEIFRT-------KEGSKKEKFENRKMHYG 58
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+V+DR +DEVLAV M AP+++T ED+VE+ HG V +R++LR L GA LA+PGE
Sbjct: 59 LVVDRFEEPIDEVLAVYMRAPKTFTGEDIVEIHSHGGIVVVRKILREVLSKGARLAEPGE 118
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
F++RAF+NG++DL QAE + +LI+A S A AL ++G S+ + +R K +E+ I
Sbjct: 119 FSMRAFINGKIDLVQAEAINELINATSEVGAKLALKQLEGALSNKIKELRDKLLEVKAYI 178
Query: 274 EARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
EA +DF D+E+ + +KI + + +E + T K+L+ G+++AIVGRPNVGKS
Sbjct: 179 EAAVDFPDEEIEIFETGHIREKILEIVEKIEKLVSTYKDGKVLKEGIKVAIVGRPNVGKS 238
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNA K ERAIVTEI GTTRD+IE +VT+ G+P+ L+DTAGIRE D VE+IG+ER+
Sbjct: 239 SLLNAILKEERAIVTEIPGTTRDIIEETVTLKGIPLRLIDTAGIREAIDKVEQIGIERTM 298
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
ADVI+ + G+T ED ++ K + +ILVINK D S
Sbjct: 299 KSLEEADVILFVIDGSIGFTEEDRKI-------SKVLKKKENVILVINKKDLGLKLS--- 348
Query: 453 NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGL--HQIPAGGRRWAVNQRQCEQLMRTK 510
+ + + V A + +GI +L I+ +V L I G N+R E L K
Sbjct: 349 CRESIDWKECVELSAKSTEGIDELGEKIVNLVLLEPETILKGEEPLLTNERHRELLESAK 408
Query: 511 EALVRLKSSIEE--ELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L+++ S++ E P +F ++D+ +A +LG+I G+ +E++L IF KFCIGK
Sbjct: 409 KSLLKVIDSLDTGFESP-EFISMDIDEALYSLGKIVGQVTTEDMLDIIFSKFCIGK 463
>gi|420261804|ref|ZP_14764448.1| tRNA modification GTPase TrmE [Enterococcus sp. C1]
gi|394771738|gb|EJF51499.1| tRNA modification GTPase TrmE [Enterococcus sp. C1]
Length = 465
Score = 317 bits (813), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 190/480 (39%), Positives = 283/480 (58%), Gaps = 29/480 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVRLSG A+ I R+F+ K + SH
Sbjct: 8 FDTIAAIST----PPGEGAISIVRLSGEEAIAIADRIFQAGTKTLAQVP--------SHT 55
Query: 150 VEYGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D N ++DEV+ M PR++TREDVVE+ CHG V + ++L+ L GA L
Sbjct: 56 IHYGHIVDPEENRLMDEVMLSVMKKPRTFTREDVVEINCHGGIVVVNQLLQLVLRQGARL 115
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ + G S L+ ++R + +E
Sbjct: 116 AEPGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMNLAVNQLDGNLSHLIRTLRQEILE 175
Query: 269 LLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L ++E +D+ D++ L L+++K + ++ L TA K+L+ GL AI+GR
Sbjct: 176 TLAQVEVNIDYPEYDDVEELTTRLLLEKATMVKGQIQALLATAQQGKILREGLSTAIIGR 235
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VEKI
Sbjct: 236 PNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVEKI 295
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS A++I++ ++ +G T ED +LL +++ I+++NK D P
Sbjct: 296 GVERSRKALAEAELILLVLNQSEGLTQEDKQLLELTAGSRR--------IILLNKTDLEP 347
Query: 447 S-ASNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCE 504
A E + + ++ +F +V T +G+ LE AI + + + N R
Sbjct: 348 KLAPAELAQY--AADEPIFPVSVLTNEGLDQLEQAIADLFFGGKTTDKDASYLSNTRHIA 405
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L ++L + IE +P+D ID+ LG++ G+ + +E+++ +F +FC+GK
Sbjct: 406 LLENAVQSLSEVIQGIEAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 465
>gi|168218051|ref|ZP_02643676.1| tRNA modification GTPase TrmE [Clostridium perfringens NCTC 8239]
gi|182379938|gb|EDT77417.1| tRNA modification GTPase TrmE [Clostridium perfringens NCTC 8239]
Length = 458
Score = 317 bits (813), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 186/476 (39%), Positives = 285/476 (59%), Gaps = 24/476 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G G + I+R+SG A++IV ++F+ + +G + +
Sbjct: 4 FDTIAAIATALG--EGGIAIIRVSGNKALEIVNKIFRGI-------NGKDLLDIKPYTMR 54
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG ++D + ++DEV+ M PRS+T ED VE+ CHG V +VL+ ++AGA LA+P
Sbjct: 55 YGHMIDENNEIIDEVIVSFMKGPRSFTAEDTVEINCHGGIVATNKVLQNVIKAGARLAEP 114
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DLSQAE V +I+AK+ + +A+ QG S+ + ++R + +++L
Sbjct: 115 GEFTKRAFLNGRIDLSQAEAVMDIITAKTELSMKSAMTQSQGRLSTEINNLRKEALDILA 174
Query: 272 EIEARLDF--DDEMPPLNLNL-VMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
IE +DF DDE P + + V + + + V N ++TA+ KL++ GL + IVG+PN
Sbjct: 175 LIEYDVDFTEDDEEPDETIPVKVKEDVITLRGKVNNLIDTADEGKLIRDGLSMVIVGKPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLNA +RAIVT+IAGTTRDVIE + + G+PV L+DTAGIRET+D+VEKIGV
Sbjct: 235 VGKSSLLNALLNEKRAIVTDIAGTTRDVIEEYINLDGIPVRLVDTAGIRETEDVVEKIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
E+S+ AD++I+ + ED E+++ I+ K I+++NK+D
Sbjct: 295 EKSKEKINEADLVILMLDTSRELDEEDKEIIDYIKDRK--------YIVLLNKVDLDRKL 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
S+E + ++ + + A TG GI DL++ I + I A N R E L R
Sbjct: 347 SSE---IVDNLENKIELSAKTGFGIDDLKSKIKDLFFNGSIDAES-VMVTNTRHKEALYR 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
E L + + LD +I + A ALG+I+G ++ E++++ IF +FC GK
Sbjct: 403 ASENLDGALNGLNNNEFLDLVSIYVTSALRALGEITGAELEEDLVNKIFAEFCCGK 458
>gi|389818758|ref|ZP_10208933.1| tRNA modification GTPase trmE [Planococcus antarcticus DSM 14505]
gi|388463668|gb|EIM06015.1| tRNA modification GTPase trmE [Planococcus antarcticus DSM 14505]
Length = 461
Score = 317 bits (813), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 192/476 (40%), Positives = 276/476 (57%), Gaps = 20/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T G GA+ IVRLSGP AV I ++F+ KK S +H +
Sbjct: 3 FDTIAAISTPSG--EGAIAIVRLSGPEAVVIADKLFRAPSKKALASQ-------VTHTIH 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG + D G V +EV+ M AP+++TREDV+E+ CHG V + RVL L AGA LA+
Sbjct: 54 YGHLEDPATGEVAEEVMVSLMKAPKTFTREDVIEINCHGGIVSVNRVLELALRAGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A D AL ++G S L+ ++R +E +
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMDVALNQMEGRLSKLIGTLRQALLESI 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + ++++K + +++ L+T++ K+L+ GL I+GRPN
Sbjct: 174 AQMEVNIDYPEYDDVEEMTRPIMLEKSKWVRSEIDKLLQTSSQGKILREGLSTVILGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + +AIVTEIAGTTRD+IE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 234 VGKSSLLNSLVQENKAIVTEIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I+ ++ + T ED L ++ I+VINK D
Sbjct: 294 ERSRKVLKEADLILYVLNYAEALTPEDELLFETVK--------DMDYIVVINKTDLPQKI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + V T + +GI LE AI + +I AG + N R L +
Sbjct: 346 DLEQVQKLAGDKLLVTTSLIEEEGIDQLEEAIAALFFQGEIEAGDMTYVSNVRHIALLHQ 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++ + E E+P+D ID+ LG+I G+ + +L+ +F +FC+GK
Sbjct: 406 AHKTILDAIRAAEMEVPVDMIQIDVTRTWELLGEIIGDTADDGLLNQLFSQFCLGK 461
>gi|134301153|ref|YP_001114649.1| tRNA modification GTPase TrmE [Desulfotomaculum reducens MI-1]
gi|189036201|sp|A4J9S1.1|MNME_DESRM RecName: Full=tRNA modification GTPase MnmE
gi|134053853|gb|ABO51824.1| tRNA modification GTPase trmE [Desulfotomaculum reducens MI-1]
Length = 461
Score = 317 bits (813), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 182/475 (38%), Positives = 292/475 (61%), Gaps = 22/475 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI AI T++G G++G++R+SGP A+ I +VF+P K+ ++ ++ + YG
Sbjct: 5 TIVAIATALG--EGSIGVIRMSGPDAITIGKKVFRPKYNKE-------WYQKDNYKIIYG 55
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
V++ G ++DEVL M P+S+T EDV+E+ CHG + LR+VL L GA A+PG
Sbjct: 56 HVINPETGEIIDEVLLSIMRGPKSFTAEDVIEISCHGGIIPLRKVLEVILRNGARHAEPG 115
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EF+ R+FLNGRLDL+QAE++ +I AK+ A A A+ + G S V ++ K + LL +
Sbjct: 116 EFSKRSFLNGRLDLAQAESIIDIIRAKTDAGAKIAVNQLGGKLSEKVNGLQHKVLGLLAK 175
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IEA +DF +D++P NL + + +++ +++E+ L A+ K+ + GL+ IVG+PNVGK
Sbjct: 176 IEAIIDFPEDDIPEENLLGISKECNSLIKEIEHLLAYADTGKIYREGLKTVIVGKPNVGK 235
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLNA +RAIVT+I GTTRDVIE +++ GVP+ ++DTAG+RET D+VEKIGVE+S
Sbjct: 236 SSLLNALLHEQRAIVTDIPGTTRDVIEEILSIKGVPLKIIDTAGLRETQDLVEKIGVEKS 295
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA--S 449
+ AD+++ + A G + ED ++++ I+ K ++++INKID + S
Sbjct: 296 RELLNQADIVLFVLDATTGISDEDRKVIDLIKDKK--------VLILINKIDITKNKIDS 347
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+E ++ N F++ + A G+ LE I +V +I + N R L R
Sbjct: 348 HEIRQLIN-FSEIIEISAQKEIGLDKLEETIFNMVVEGKITTTDSIFVSNSRHKHALERA 406
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ L+ ++E +P D +IDL+ + LG+I+G ++E+++ IF FCIGK
Sbjct: 407 MQHLLEASKGLQEYVPADLVSIDLKSSWEILGEITGNSVTEDLIDRIFSDFCIGK 461
>gi|325567648|ref|ZP_08144315.1| tRNA modification GTPase TrmE [Enterococcus casseliflavus ATCC
12755]
gi|325159081|gb|EGC71227.1| tRNA modification GTPase TrmE [Enterococcus casseliflavus ATCC
12755]
Length = 481
Score = 317 bits (812), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 190/480 (39%), Positives = 284/480 (59%), Gaps = 29/480 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVRLSG A+ I R+F+ K + SH
Sbjct: 24 FDTIAAIST----PPGEGAISIVRLSGEEAIAIADRIFQAGTKTLAQVP--------SHT 71
Query: 150 VEYGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D N ++DEV+ M PR++TREDVVE+ CHG V + ++L+ L GA L
Sbjct: 72 IHYGHIVDPEENRLMDEVMLSVMKKPRTFTREDVVEINCHGGIVVVNQLLQLVLRQGARL 131
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ + G S L+ ++R + +E
Sbjct: 132 AEPGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMNLAVNQLDGNLSHLIRTLRQEILE 191
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L ++E +D+ D++ L L+++K + ++ L TA K+L+ GL AI+GR
Sbjct: 192 TLAQVEVNIDYPEYDDVEELTTRLLLEKATMVKGQIQALLATAQQGKILREGLSTAIIGR 251
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D+VEKI
Sbjct: 252 PNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVEKI 311
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS A++I++ ++ +G T ED +LL +++ I+++NK D P
Sbjct: 312 GVERSRKALAEAELILLVLNQSEGLTQEDKQLLELTAGSRR--------IILLNKTDLEP 363
Query: 447 S-ASNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCE 504
A E + + ++ +F+ +V T +G+ LE AI + + + N R
Sbjct: 364 KLAPAELAQY--AADEPIFSVSVLTNEGLDQLEQAIADLFFGGKTTDKDASYLSNTRHIA 421
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L ++L + IE +P+D ID+ LG++ G+ + +E+++ +F +FC+GK
Sbjct: 422 LLENAVQSLSEVIQGIEAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 481
>gi|427392957|ref|ZP_18886860.1| tRNA modification GTPase mnmE [Alloiococcus otitis ATCC 51267]
gi|425730888|gb|EKU93718.1| tRNA modification GTPase mnmE [Alloiococcus otitis ATCC 51267]
Length = 462
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 184/480 (38%), Positives = 283/480 (58%), Gaps = 29/480 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG +GIVR+SG A+ I RV++ KK SH
Sbjct: 5 FDTIAAIST----PPGEGGIGIVRISGEEAIAIADRVYQMGSKKISDQD--------SHT 52
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG V+D + VVDEV+ M AP++YT+EDVVE+ HG + + +VL+ L GA L
Sbjct: 53 IHYGRVVDPKTDQVVDEVMVTLMKAPKTYTKEDVVEINSHGGILAVNKVLQLVLNNGARL 112
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQAE V +I AK+ A A+ + G S L+ ++R + ++
Sbjct: 113 AEPGEFTKRAFLNGRVDLSQAEAVMDMIRAKTDKAMQVAVNQMDGDLSKLIRNLRQEILD 172
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L ++E +D+ D++ + ++++K ++ V+ LETA K+L+ GL AI+GR
Sbjct: 173 TLAQVEVNIDYPEYDDVEEMTSQMLLEKAQSVKSQVKALLETAQQGKVLREGLATAIIGR 232
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN + E+AIVT++AGTTRD++E V+V GVP+ L+DTAGIR+T+D VE+I
Sbjct: 233 PNVGKSSLLNKLLREEKAIVTDVAGTTRDIVEEYVSVKGVPLRLIDTAGIRDTEDQVERI 292
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS AD++++ + + T ED L+ + +K+ I+++NK D
Sbjct: 293 GVERSRKAIQDADLVLLVFNQHEALTDEDLALIEATKDHKR--------IVILNKSDLDQ 344
Query: 447 SASNEWNKVGNSFNDHVF--TCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCE 504
+ +++ + D F T A+T G+ DLE I + Q + N R
Sbjct: 345 HL--DLDRLSQALPDADFITTSAMTDLGLTDLEDKIADLFFSGQTGDRDATYVSNTRHIS 402
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + +AL + I+ +P+D +D+ A LG+I+G+ + +E+++ +F +FC+GK
Sbjct: 403 LLNKAVDALDEVIEGIDLGMPVDLVQVDMTRAWDYLGEITGDSVQDELITQLFSQFCLGK 462
>gi|184156315|ref|YP_001844655.1| GTPase [Lactobacillus fermentum IFO 3956]
gi|227514112|ref|ZP_03944161.1| tRNA modification GTP-binding protein TrmE [Lactobacillus fermentum
ATCC 14931]
gi|385812834|ref|YP_005849225.1| tRNA modification GTP-binding protein TrmE [Lactobacillus fermentum
CECT 5716]
gi|183227659|dbj|BAG28175.1| GTPase [Lactobacillus fermentum IFO 3956]
gi|227087483|gb|EEI22795.1| tRNA modification GTP-binding protein TrmE [Lactobacillus fermentum
ATCC 14931]
gi|299783731|gb|ADJ41729.1| tRNA modification GTP-binding protein TrmE [Lactobacillus fermentum
CECT 5716]
Length = 462
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 190/476 (39%), Positives = 273/476 (57%), Gaps = 26/476 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T +G G + I+R+SG A+D+V R+FK G + SH + YG
Sbjct: 8 TIAAISTPVG--EGGISIIRVSGDQALDVVSRIFK----------GKDLHQVKSHTINYG 55
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D G VDEV+ MLAP++YT+EDVVE+ CHG + R L+ L GA LA+PG
Sbjct: 56 HIIDPASGETVDEVMVSVMLAPKTYTKEDVVEINCHGGLLATNRALQLTLTNGARLAEPG 115
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
E+T RAFLNGRLDLSQAE V LI AK+ + AL + G S L+ ++R +++L +
Sbjct: 116 EYTKRAFLNGRLDLSQAEAVMDLIRAKTDKSMKVALNQLDGDLSRLIKALRQDILDVLAQ 175
Query: 273 IEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+E +D+ D + + ++ +K + Q +E L+TA K+L+ GL AI+GRPNVG
Sbjct: 176 VEVNIDYPEYDAVEEMTTKMLKEKASEVRQRLETLLQTAKEGKVLRDGLATAIIGRPNVG 235
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNA ++AIVTE+AGTTRDVIE V V GVP+ L+DTAGIR TDD VEKIGVER
Sbjct: 236 KSSLLNALLHEDKAIVTEVAGTTRDVIEEYVNVAGVPLKLIDTAGIRHTDDTVEKIGVER 295
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS- 449
S+ AD+I++ + + T ED L+ + P +++ NK D
Sbjct: 296 SKQAIETADLILLLIDSSRPLTEEDRALI--------EATAQKPRMVIFNKTDLPAQVDL 347
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAG-GRRWAVNQRQCEQLMR 508
E ++ N + + T + G+Q+L AI I + G N R L +
Sbjct: 348 AELTELVNG-DPVIQTSILEHAGMQELGQAIAHRFFNEGIESNRGAVMVTNARHIGLLHQ 406
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L + IE +P+D ID+ DA LG+I+G+ +E+L +F +FC+GK
Sbjct: 407 AVDSLNAVLEGIEAGMPVDLVQIDMTDAWNTLGEITGQTYQDELLDQLFSQFCLGK 462
>gi|337752164|ref|YP_004646326.1| protein MnmE [Paenibacillus mucilaginosus KNP414]
gi|336303353|gb|AEI46456.1| MnmE [Paenibacillus mucilaginosus KNP414]
Length = 463
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 192/475 (40%), Positives = 279/475 (58%), Gaps = 25/475 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T G G + ++R+SG AV + ++F KK + + H V YG
Sbjct: 10 TIAAIATPSG--EGGIAVIRVSGDEAVAVSDKIFAGKKKLAEVDT---------HTVNYG 58
Query: 154 VVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+ + V +EVL M APRS+T+EDVVE+ CHG V +R+VL LE+GA LA+PG
Sbjct: 59 YIREPDTGVRTEEVLVTVMRAPRSFTKEDVVEISCHGGFVSVRKVLDLLLESGARLAEPG 118
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RA+L+GR+DLSQAE V LI AKS A AL +G S + +R + +EL+
Sbjct: 119 EFTKRAYLSGRIDLSQAEAVIDLIRAKSDRAFRIALKQSEGTLSKRIKELRHRLVELMAH 178
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IE +D+ + ++ L + DK A D+E+ L+TA K+L+ GL AI+GRPNVGK
Sbjct: 179 IEVNIDYPEHDVEELTNLFIKDKCSAALADIEHLLQTAQQGKILREGLVTAIIGRPNVGK 238
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSL+N ++ ERAIVTEIAGTTRDV+E V V G+P+ LLDTAGIRET D+VE+IGVE+S
Sbjct: 239 SSLMNTLAQEERAIVTEIAGTTRDVVEEYVHVNGIPLKLLDTAGIRETSDLVEQIGVEKS 298
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
AD+I++ + + ++ L+ +++ + +I +INK D E
Sbjct: 299 RQALSDADLILLVFNGAEPLQPDELSLIEQLRGRQ--------VIAIINKQDLPQQIEIE 350
Query: 452 WNKVGNSF-NDHVFTCAVTG-QGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+ + SF ++HV ++ QGI DLE AI + Q+ + + N R L +
Sbjct: 351 FLR--ESFGSEHVVPMSILAQQGIADLEKAIAGLFFSGQVESSDLTYVSNARHIGLLKQA 408
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ AL + E +P+D ID+R+A LG+I G+ +SE ++ IF +FC+GK
Sbjct: 409 RTALTEAHQAAESFVPIDMIQIDIRNAWEHLGEIIGDAVSESLIDQIFSQFCLGK 463
>gi|374710122|ref|ZP_09714556.1| tRNA modification GTPase TrmE [Sporolactobacillus inulinus CASD]
Length = 459
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 186/478 (38%), Positives = 280/478 (58%), Gaps = 26/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
+ TIAAI T IG GA+ IVRLSGP AV R+F K+ + S H +
Sbjct: 3 YDTIAAISTPIG--EGAISIVRLSGPEAVHAADRLFHGRKRLVEVDS---------HTIH 51
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+EV+ M P+++TREDVVE+ CHG + RVL L+ LA+
Sbjct: 52 YGKIVDPETGQTVEEVMVSVMRKPKTFTREDVVEINCHGGLTSVNRVLELILDQDVRLAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S LV + + +++L
Sbjct: 112 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDQAMNVAIGQMEGKLSQLVRKLGQQLLDIL 171
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D+ + L+++K A+ ++++ L TA K+L+ GL IVGRPN
Sbjct: 172 AAVEVNIDYPEYDDAEVMTNQLLIEKGTAVRKELDRVLATARQGKILREGLSTVIVGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN +AIVT + GTTRDVIE V V GVP+ L+DTAGIR+TDD+VEKIGV
Sbjct: 232 VGKSSLLNQLVHESKAIVTNVPGTTRDVIEEYVNVRGVPLKLVDTAGIRDTDDVVEKIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
RS+ + A++ ++ ++ + T ED +L I P I+++NK D A
Sbjct: 292 SRSKELLKSAELALLLINGNEPLTEEDRQLFQMI--------DGIPAIILMNKADLPQQA 343
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
S ++V DH + T ++ +G+++LE AI + + + GG + N R L
Sbjct: 344 S--IDEVKALAGDHPVLQTSMISEKGLEELEQAIAHLFFSNSVATGGEAYVSNTRHIALL 401
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++A+ + E+ +P+D ID++ + LG+I GE +S+ +++ +F KFC+GK
Sbjct: 402 KQARQAINDAIEAAEQGMPVDMTQIDIKRSWDLLGEIVGETVSDRLINELFSKFCLGK 459
>gi|18311637|ref|NP_563571.1| tRNA modification GTPase TrmE [Clostridium perfringens str. 13]
gi|110799764|ref|YP_697346.1| tRNA modification GTPase TrmE [Clostridium perfringens ATCC 13124]
gi|168207742|ref|ZP_02633747.1| tRNA modification GTPase TrmE [Clostridium perfringens E str.
JGS1987]
gi|168211557|ref|ZP_02637182.1| tRNA modification GTPase TrmE [Clostridium perfringens B str. ATCC
3626]
gi|168214843|ref|ZP_02640468.1| tRNA modification GTPase TrmE [Clostridium perfringens CPE str.
F4969]
gi|169343475|ref|ZP_02864475.1| tRNA modification GTPase TrmE [Clostridium perfringens C str.
JGS1495]
gi|182626407|ref|ZP_02954160.1| tRNA modification GTPase TrmE [Clostridium perfringens D str.
JGS1721]
gi|422347722|ref|ZP_16428633.1| tRNA modification GTPase mnmE [Clostridium perfringens WAL-14572]
gi|422875603|ref|ZP_16922088.1| tRNA modification GTPase TrmE [Clostridium perfringens F262]
gi|21363002|sp|Q8XH30.1|MNME_CLOPE RecName: Full=tRNA modification GTPase MnmE
gi|123344426|sp|Q0TLZ4.1|MNME_CLOP1 RecName: Full=tRNA modification GTPase MnmE
gi|18146321|dbj|BAB82361.1| probable thiophen / furan oxidation protein [Clostridium
perfringens str. 13]
gi|110674411|gb|ABG83398.1| tRNA modification GTPase TrmE [Clostridium perfringens ATCC 13124]
gi|169298427|gb|EDS80516.1| tRNA modification GTPase TrmE [Clostridium perfringens C str.
JGS1495]
gi|170660919|gb|EDT13602.1| tRNA modification GTPase TrmE [Clostridium perfringens E str.
JGS1987]
gi|170710445|gb|EDT22627.1| tRNA modification GTPase TrmE [Clostridium perfringens B str. ATCC
3626]
gi|170713713|gb|EDT25895.1| tRNA modification GTPase TrmE [Clostridium perfringens CPE str.
F4969]
gi|177908281|gb|EDT70834.1| tRNA modification GTPase TrmE [Clostridium perfringens D str.
JGS1721]
gi|373223700|gb|EHP46047.1| tRNA modification GTPase mnmE [Clostridium perfringens WAL-14572]
gi|380303485|gb|EIA15788.1| tRNA modification GTPase TrmE [Clostridium perfringens F262]
Length = 458
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 186/476 (39%), Positives = 285/476 (59%), Gaps = 24/476 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G G + I+R+SG A++IV ++F+ + +G + +
Sbjct: 4 FDTIAAIATALG--EGGIAIIRVSGNKALEIVNKIFRGI-------NGKDLLDIKPYTMR 54
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG ++D + ++DEV+ M PRS+T ED VE+ CHG V +VL+ ++AGA LA+P
Sbjct: 55 YGHMIDENNEIIDEVIVSFMKGPRSFTAEDTVEINCHGGIVATNKVLQNVIKAGARLAEP 114
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DLSQAE V +I+AK+ + +A+ QG S+ + ++R + +++L
Sbjct: 115 GEFTKRAFLNGRIDLSQAEAVMDIITAKTELSMKSAMTQSQGRLSTEINNLRKEALDILA 174
Query: 272 EIEARLDF--DDEMPPLNLNL-VMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
IE +DF DDE P + + V + + + V N ++TA+ KL++ GL + IVG+PN
Sbjct: 175 LIEYAVDFTEDDEEPDETIPVKVKEDVITLRGKVNNLIDTADEGKLIRDGLSMVIVGKPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLNA +RAIVT+IAGTTRDVIE + + G+PV L+DTAGIRET+D+VEKIGV
Sbjct: 235 VGKSSLLNALLNEKRAIVTDIAGTTRDVIEEYINLDGIPVRLVDTAGIRETEDVVEKIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
E+S+ AD++I+ + ED E+++ I+ K I+++NK+D
Sbjct: 295 EKSKEKINEADLVILMLDTSRELDEEDKEIIDYIKDRK--------YIVLLNKVDLDRKL 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
S+E + ++ + + A TG GI DL++ I + I A N R E L R
Sbjct: 347 SSE---IVDNLENKIELSAKTGFGIDDLKSKIKDLFFNGSIDAES-VMVTNTRHKEALYR 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
E L + + LD +I + A ALG+I+G ++ E++++ IF +FC GK
Sbjct: 403 ASENLDGALNGLNNNEFLDLVSIYVTSALRALGEITGAELEEDLVNKIFAEFCCGK 458
>gi|260662533|ref|ZP_05863428.1| tRNA modification GTPase TrmE [Lactobacillus fermentum 28-3-CHN]
gi|260553224|gb|EEX26167.1| tRNA modification GTPase TrmE [Lactobacillus fermentum 28-3-CHN]
Length = 462
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 190/476 (39%), Positives = 273/476 (57%), Gaps = 26/476 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T +G G + I+R+SG A+D+V R+FK G + SH + YG
Sbjct: 8 TIAAISTPVG--EGGISIIRVSGDQALDVVSRIFK----------GKDLHQVKSHTINYG 55
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D G VDEV+ MLAP++YT+EDVVE+ CHG + R L+ L GA LA+PG
Sbjct: 56 HIIDPASGETVDEVMVSVMLAPKTYTKEDVVEINCHGGLLATNRALQLTLTNGARLAEPG 115
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
E+T RAFLNGRLDLSQAE V LI AK+ + AL + G S L+ ++R +++L +
Sbjct: 116 EYTKRAFLNGRLDLSQAEAVMDLIRAKTDKSMKVALNQLDGDLSRLIKALRQDILDVLAQ 175
Query: 273 IEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+E +D+ D + + ++ +K + Q +E L+TA K+L+ GL AI+GRPNVG
Sbjct: 176 VEVNIDYPEYDAVEEMTTKMLKEKASEVRQRLETLLQTAKEGKVLRDGLATAIIGRPNVG 235
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNA ++AIVTE+AGTTRDVIE V V GVP+ L+DTAGIR TDD VEKIGVER
Sbjct: 236 KSSLLNALLHEDKAIVTEVAGTTRDVIEEYVNVAGVPLKLIDTAGIRHTDDTVEKIGVER 295
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS- 449
S+ AD+I++ + + T ED L+ + P +++ NK D
Sbjct: 296 SKQAIETADLILLLIDSSRLLTEEDRALI--------EATAQKPRMVIFNKTDLPAQVDL 347
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAG-GRRWAVNQRQCEQLMR 508
E ++ N + + T + G+Q+L AI I + G N R L +
Sbjct: 348 AELTELVNG-DPVIQTSILEHAGMQELGQAIAHRFFNEGIESNRGAVMVTNARHIGLLHQ 406
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L + IE +P+D ID+ DA LG+I+G+ +E+L +F +FC+GK
Sbjct: 407 AVDSLNAVLEGIEAGMPVDLVQIDMTDAWNTLGEITGQTYQDELLDQLFSQFCLGK 462
>gi|323487692|ref|ZP_08092950.1| tRNA modification GTPase trmE [Planococcus donghaensis MPA1U2]
gi|323398426|gb|EGA91214.1| tRNA modification GTPase trmE [Planococcus donghaensis MPA1U2]
Length = 461
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 192/476 (40%), Positives = 274/476 (57%), Gaps = 20/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T G GA+ IVRLSGP AV I ++F+ K S + H +
Sbjct: 3 FDTIAAISTPSG--EGAIAIVRLSGPEAVAIADKLFRAPSNKALASQAT-------HTIH 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG + D G + +EV+ M AP+++TREDV+E+ CHG V + RVL L AGA LA+
Sbjct: 54 YGHLEDPATGEIAEEVMVSLMKAPKTFTREDVIEINCHGGIVSVNRVLELVLRAGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A D AL ++G S L+ ++R +E +
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMDVALNQMEGKLSKLIGTLRQALLESI 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + ++++K + ++E L+T++ K+L+ GL I+GRPN
Sbjct: 174 AQMEVNIDYPEYDDVEEMTRPIMLEKSKWVRSEIEKLLQTSSQGKILREGLSTVILGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + +AIVTEIAGTTRD+IE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 234 VGKSSLLNSLVQENKAIVTEIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I+ ++ + T ED L ++ I+VINK D
Sbjct: 294 ERSRKVLKEADLILYVLNYAEALTPEDELLFETVK--------DMDYIVVINKTDLPQKI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + V T V +GI LE AI + +I AG + N R L +
Sbjct: 346 DLEQVQKLAGDKLLVTTSLVEEEGIDQLEEAIAALFFKGEIEAGDMTYVSNVRHIALLHQ 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + + E E+P+D ID+ LG+I G+ + +L+ +F +FC+GK
Sbjct: 406 AHKTISDAIEAAEMEVPVDMIQIDVTRTWELLGEIIGDTADDGLLNQLFSQFCLGK 461
>gi|403389390|ref|ZP_10931447.1| tRNA modification GTPase TrmE [Clostridium sp. JC122]
Length = 458
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 185/475 (38%), Positives = 283/475 (59%), Gaps = 22/475 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAA+ TSIG G V I+R+SG A++IV ++FK K +S ++ +
Sbjct: 4 FDTIAAVATSIG--EGGVSIIRVSGDKALNIVSKIFKG---KNNRSLDD----IKTYTMR 54
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ +G +DEV+ M PRS+T EDVVE+ CHG V RV+ L+ GA LA+P
Sbjct: 55 YGYIINSNGEHIDEVIVSYMKGPRSFTAEDVVEINCHGGVVATNRVMSEVLKVGARLAEP 114
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DLSQAE + +I+AK+ + +AL +GG S + ++R + ++ +
Sbjct: 115 GEFTKRAFLNGRIDLSQAEAIIDIINAKTELSMKSALMQSEGGISKEINALRNELLQSIA 174
Query: 272 EIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
IEA +D+ +D++ + + +M ++ L +A+ K+L+ GL IVG+PNVG
Sbjct: 175 HIEATVDYPEDDLEEVTAEGAAKTLKSMLIKIDELLASADEGKILREGLNTVIVGKPNVG 234
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNA +K RAIVT++ GTTRDVIE + + GVP+ ++DTAGIRET+D+VEKIGVER
Sbjct: 235 KSSLLNALTKENRAIVTDVPGTTRDVIEEYINISGVPIKIVDTAGIRETEDVVEKIGVER 294
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S+ AD+II+ + + ED E+++ I K I+++NK+D
Sbjct: 295 SKEKINQADLIILILDSSRQLDEEDREIISYILDKK--------YIVLLNKLDLDGKIKK 346
Query: 451 EWNKVGNSFNDHVF-TCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
E K +S ++VF A TG+ I + AI + ++ + N R E L R
Sbjct: 347 EDLKEFDS--NYVFEISAKTGKNIDKVREAIKDLFFKGEV-SNDDIIITNTRHKEALFRA 403
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
KE + ++E +D +ID+R+A LG+I+G + E+++ IF +FC+GK
Sbjct: 404 KENIQGAIDTLENTFAIDLASIDIRNAWSDLGKITGSTLEEDIIDKIFSEFCLGK 458
>gi|384044181|ref|YP_005492198.1| tRNA modification GTPase TrmE [Bacillus megaterium WSH-002]
gi|345441872|gb|AEN86889.1| tRNA modification GTPase TrmE [Bacillus megaterium WSH-002]
Length = 462
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 187/478 (39%), Positives = 280/478 (58%), Gaps = 24/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG A+ I R+FK V K+ S H +
Sbjct: 4 FDTIAAISTPMG--EGAIAIVRLSGEEAITIADRIFKSVSNKRLTEVAS-------HTIH 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + VV+EV+ M P+++TRED++E+ CHG V + RVL+ + GA LA+
Sbjct: 55 YGHIVDPKTEQVVEEVMLSIMKGPKTFTREDIIEINCHGGIVSVNRVLQLVIANGARLAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S LV +R + +E L
Sbjct: 115 PGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMNMAIGQMEGRLSKLVRHLRQEILETL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + ++++K + Q+++ L+T++ K+L+ GL I+GRPN
Sbjct: 175 AHVEVNIDYPEYDDVEEMTHQVLIEKASNVRQEIDKLLQTSHQGKILREGLATVIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 235 VGKSSLLNSLVQDAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD+I++ ++ + T ED +L ++ +I+++NK D
Sbjct: 295 ERSRQYLKEADLILLVLNFHEELTDEDKKLFEAVK--------GMDVIVIVNKTDLEQKI 346
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ E +V +H V T + QG+ LE AI + I + + N R L
Sbjct: 347 NLE--EVQQFAGNHPVVTTSLLQEQGVDQLEEAIAALFFEGTIESQDLTYLSNTRHIALL 404
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + A+ + IE +P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 405 TQARGAIDEAITGIESGVPIDIVQIDLTRTWELLGEIIGDAVHESLIDQLFSQFCLGK 462
>gi|335357932|ref|ZP_08549802.1| tRNA modification GTPase TrmE [Lactobacillus animalis KCTC 3501]
Length = 463
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 191/479 (39%), Positives = 284/479 (59%), Gaps = 29/479 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVRLSG AV I +VFK G + +SH
Sbjct: 8 FDTIAAIAT----PPGEGAISIVRLSGDDAVTIANQVFK----------GKDLTKVSSHT 53
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG +D + ++DEV+ + AP+++T ED +E+ CHG V ++L+ L GA L
Sbjct: 54 INYGHFIDPKTREIIDEVMVSVLRAPKTFTCEDTIEINCHGGIVPTNKILQVLLTNGARL 113
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFL+GR+DL+QAE+V LI AK+ + AAL + G S L+ ++R + ++
Sbjct: 114 AEPGEFTKRAFLHGRIDLAQAESVMDLIRAKTDRSMKAALNQLDGNLSQLIKNLRQEILD 173
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L ++E +D+ D++ + L+ +K + +E L TA K+L+ GL A+VGR
Sbjct: 174 VLAQVEVNIDYPEYDDVEEMTSKLLREKAIDVRAKIEQLLVTARQGKILREGLATALVGR 233
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRETDD+VEKI
Sbjct: 234 PNVGKSSLLNHLLHEDKAIVTDIAGTTRDVIEEYVNVRGVPLKLVDTAGIRETDDMVEKI 293
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS +D++++ ++A + T+ED ELL Q+ K+ I+V+NK+D P
Sbjct: 294 GVERSRQAIDRSDLVMLLLNASEPLTTEDIELLQLTQAKKR--------IIVLNKMDLEP 345
Query: 447 SAS-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
NE + + + + T + +GI +LE I + + N R
Sbjct: 346 KLDPNELYQYVDK-AEVLKTSVLKNEGISELEEHIAALFYGGIENSQATVLVTNARHIAL 404
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + K AL + + +++ELP+D ID+ A LG+I+G+ +E+L +F +FC+GK
Sbjct: 405 LEQAKAALEAVLTGLDQELPVDLVQIDMTRAWELLGEITGDSYQDELLDQLFSQFCLGK 463
>gi|110802832|ref|YP_699904.1| tRNA modification GTPase TrmE [Clostridium perfringens SM101]
gi|123047103|sp|Q0SPQ3.1|MNME_CLOPS RecName: Full=tRNA modification GTPase MnmE
gi|110683333|gb|ABG86703.1| tRNA modification GTPase TrmE [Clostridium perfringens SM101]
Length = 458
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 186/476 (39%), Positives = 284/476 (59%), Gaps = 24/476 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G G + I+R+SG A++IV ++F+ + +G + +
Sbjct: 4 FDTIAAIATALG--EGGIAIIRVSGNKALEIVNKIFRGI-------NGKDLLDIKPYTMR 54
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG ++D + ++DEV+ M PRS+T ED VE+ CHG V +VL+ ++AGA LA+P
Sbjct: 55 YGHMIDENNEIIDEVIVSFMKGPRSFTAEDTVEINCHGGIVATNKVLQNVIKAGARLAEP 114
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DLSQAE V +I+AK+ + +A+ QG S+ + ++R + +++L
Sbjct: 115 GEFTKRAFLNGRIDLSQAEAVMDIITAKTELSMKSAMTQSQGRLSTEINNLRKEALDILA 174
Query: 272 EIEARLDF--DDEMPPLNLNL-VMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
IE +DF DDE P + + V + + + V N ++TA+ KL++ GL + IVG+PN
Sbjct: 175 LIEYAVDFTEDDEEPDETIPVKVKEDVITLRGKVNNLIDTADEGKLIRDGLSMVIVGKPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLNA RAIVT+IAGTTRDVIE + + G+PV L+DTAGIRET+D+VEKIGV
Sbjct: 235 VGKSSLLNALLNENRAIVTDIAGTTRDVIEEYINLDGIPVRLVDTAGIRETEDVVEKIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
E+S+ AD++I+ + ED E+++ I+ K I+++NK+D
Sbjct: 295 EKSKEKINEADLVILMLDTSRELDEEDKEIIDYIKDRK--------YIVLLNKVDLDRKL 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
S+E + ++ + + A TG GI DL++ I + I A N R E L R
Sbjct: 347 SSE---IVDNLENKIELSAKTGFGIDDLKSKIKDLFFNGSIDAES-VMVTNTRHKEALYR 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
E L + + LD +I + A ALG+I+G ++ E++++ IF +FC GK
Sbjct: 403 ASENLDGALNGLNNNEFLDLVSIYVTSALRALGEITGAELEEDLVNKIFAEFCCGK 458
>gi|169830197|ref|YP_001700355.1| tRNA modification GTPase trmE [Lysinibacillus sphaericus C3-41]
gi|205415777|sp|B1HPM3.1|MNME_LYSSC RecName: Full=tRNA modification GTPase MnmE
gi|168994685|gb|ACA42225.1| Probable tRNA modification GTPase trmE [Lysinibacillus sphaericus
C3-41]
Length = 461
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 192/478 (40%), Positives = 279/478 (58%), Gaps = 24/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG AV I ++FK G SH +
Sbjct: 3 FDTIAAISTPMG--EGAIAIVRLSGDEAVAIADKIFKS-------PGGKSLTTKDSHTIH 53
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N VV+EV+ M P+++TREDVVE+ CHG V + RVL+ L GA LA+
Sbjct: 54 YGHLVDPKTNEVVEEVMLSLMRGPKTFTREDVVEINCHGGLVSVNRVLQLALTNGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL + G S L+ +R +E L
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMDGKLSRLIGDLRQALLETL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + + ++++K + ++ L+T++ K+L+ GL I+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTVPVLVEKCTWVRDEIIKLLQTSSQGKILREGLSTVILGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + +AIVT+IAGTTRD+IE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 234 VGKSSLLNSLVQENKAIVTDIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS GAD+I+ ++ D T+ED L I+ + I++INK D P
Sbjct: 294 ERSREALRGADLILFVLNYADELTAEDERLFETIE--------AMDYIVIINKTDL-PQK 344
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
N +V H V T + +G+ +LE AI + QI AG + N R L
Sbjct: 345 IN-LARVKELAGKHRIVTTSLLQEEGVTELEEAIAALFFEGQIEAGDLTYVSNARHIALL 403
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + + ++ + +P+D ID+ LG+I G+ + E +++ +F +FC+GK
Sbjct: 404 HQAQATVEDAIAAAQAGVPVDMVQIDVTRTWELLGEIIGDTVQESLINQLFSQFCLGK 461
>gi|52082648|ref|YP_081439.1| tRNA modification GTPase TrmE [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319648514|ref|ZP_08002730.1| tRNA modification GTPase mnmE [Bacillus sp. BT1B_CT2]
gi|404491528|ref|YP_006715634.1| tRNA modification GTPase TrmE [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423680383|ref|ZP_17655222.1| tRNA modification GTPase TrmE [Bacillus licheniformis WX-02]
gi|81384063|sp|Q65CN1.1|MNME_BACLD RecName: Full=tRNA modification GTPase MnmE
gi|52005859|gb|AAU25801.1| ThdF protein - tRNA modification [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52350549|gb|AAU43183.1| putative tRNA modification GTPase ThdF [Bacillus licheniformis DSM
13 = ATCC 14580]
gi|317389593|gb|EFV70404.1| tRNA modification GTPase mnmE [Bacillus sp. BT1B_CT2]
gi|383441489|gb|EID49198.1| tRNA modification GTPase TrmE [Bacillus licheniformis WX-02]
Length = 459
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 185/476 (38%), Positives = 277/476 (58%), Gaps = 20/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T +G GA+ IVR+SGP A+ I +V+K + K+ S S H +
Sbjct: 1 MDTIAAISTPMG--EGAIAIVRMSGPEALAIADKVYKGPRGKRLSSVDS-------HTIN 51
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D VV+EV+ + AP+++TRED+VE+ CHG V + +VL+ L GA LA+
Sbjct: 52 YGHIVDPETEKVVEEVMVSVLKAPKTFTREDIVEINCHGGLVTVNQVLQLVLREGARLAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G SSL+ +RA+ +E L
Sbjct: 112 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSSLIKRLRAEILETL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + ++++K + +++E L T+ K+L+ G+ I+GRPN
Sbjct: 172 AHVEVNIDYPEYDDVEEMTHKMLIEKATKVKKEIEALLTTSEQGKILREGISTVIIGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 232 VGKSSLLNSLVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ + + ED +L + +I+++NK D
Sbjct: 292 ERSRQVLKEADLILLVLNYSESLSDEDIKLFEATK--------GMDIIVIVNKTDLEQKL 343
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ + V T + +GI +LE AI + I +G + N R L
Sbjct: 344 DLDRVRELAGNQPVVTTSLLKEEGIDELEEAIQSLFFTGAIESGDLTYVSNTRHISLLHE 403
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K A+ IE ++P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 404 AKRAITDALEGIENDVPIDMVQIDLTRCWEVLGEIIGDAVHESLIDQLFSQFCLGK 459
>gi|381210638|ref|ZP_09917709.1| tRNA modification GTPase TrmE [Lentibacillus sp. Grbi]
Length = 458
Score = 316 bits (809), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 188/477 (39%), Positives = 275/477 (57%), Gaps = 29/477 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI AI T +G GA+ IVRLSG A+ + ++F+ G SH + YG
Sbjct: 5 TITAISTPVG--EGAISIVRLSGSAAIPVTAKLFE----------GKNLHDADSHTIHYG 52
Query: 154 VVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D N V +EV+ M AP+++TREDVVE+ CHG V + RVL LE G +A+PG
Sbjct: 53 KIIDPETNEVAEEVMVTIMRAPKTFTREDVVEINCHGGMVAVNRVLETILEQGVRIAEPG 112
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFL+GR+DLSQAE V LI +K+ A AL + G S L+ +R + IE +
Sbjct: 113 EFTKRAFLHGRIDLSQAEAVMDLIRSKTDKAMSVALKQMDGRLSQLIGRLRQQLIETVAH 172
Query: 273 IEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+E +D+ D++ ++ ++ K + ++E+ LE A K+L+ GL AI+GRPNVG
Sbjct: 173 VEVNIDYPEYDDVEEMSHEMMRTKSKEVHAEIEHLLEVAKQGKILREGLSTAIIGRPNVG 232
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSL+N + +AIVTE+ GTTRD+IE V V GVP+ L+DTAGIRET+DIVEKIGV+R
Sbjct: 233 KSSLMNTLVQESKAIVTEVPGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVDR 292
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S V +D+I+ ++ + T ED +L +Q I++INK D
Sbjct: 293 SRKVLEESDLILFVLNYNEELTEEDKKLFEAVQ--------GLDYIVMINKTDLDQKLDL 344
Query: 451 EWNKVGNSFNDH---VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
E KV N F ++ + + +GI +LE+AI + I G + N R + L
Sbjct: 345 E--KV-NEFAENKPVINASLIKEEGIDELESAISETFFAGDIDTGDMTYVSNIRHIQLLK 401
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K+AL SS++ E+PLD ID+ LG+I G+ S+ ++ +F +FC+GK
Sbjct: 402 QAKQALEDAMSSLDMEMPLDIVQIDVTRTWEFLGEIIGDTASDSLIDQLFSQFCLGK 458
>gi|392530643|ref|ZP_10277780.1| tRNA modification GTPase TrmE [Carnobacterium maltaromaticum ATCC
35586]
Length = 462
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 195/483 (40%), Positives = 288/483 (59%), Gaps = 35/483 (7%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAA+ T PPG A+GIVRLSG A+ + +V++ KK + SH
Sbjct: 5 FDTIAAVST----PPGEGAIGIVRLSGEEALQVADKVYQAGTKKLVDVA--------SHT 52
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG + D + +DEV+ M +P+++TREDVVE+ CHG + +VL+ L+ GA L
Sbjct: 53 IHYGHIRDPKTSETIDEVMVSVMRSPKTFTREDVVEINCHGGITSVNQVLQIVLQNGARL 112
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQAE V LI AK+ A AL + G S+L+ ++R++ ++
Sbjct: 113 AEPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDKAMYLALQQLDGNLSTLIRNLRSEILD 172
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L ++E +D+ D++ L L+++K + + + L+TA+ K+L+ GL AI+GR
Sbjct: 173 TLAQVEVNIDYPEYDDVETLTARLLVEKAYHVKASINQLLQTASQGKILREGLATAIIGR 232
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN + E+AIVTEIAGTTRDVIE V V GVP+ L+DTAGIRET+DIVEKI
Sbjct: 233 PNVGKSSLLNFLLQEEKAIVTEIAGTTRDVIEEYVNVRGVPLKLVDTAGIRETEDIVEKI 292
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS AD++++ + + T ED L+ N + I+++NK+D P
Sbjct: 293 GVERSRQALQEADLVLLVFNQNEPLTLEDKLLIEATDDNHR--------IIILNKMDL-P 343
Query: 447 SASN--EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRR---WAVNQR 501
+ + E ++ + + V T +T GI LE KI L A G R + N R
Sbjct: 344 NQLDLAELERLVDPAS-IVKTSILTKSGIDVLEE---KIAALFFAGATGDRDATYVSNVR 399
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
L + AL + + IE ++P+D ID+ LG+I+G+ + +E+L+ +F +FC
Sbjct: 400 HIALLHDAEAALDEVINGIEADMPVDLVQIDMTRCWDLLGEITGDSVQDELLTQLFSQFC 459
Query: 562 IGK 564
+GK
Sbjct: 460 LGK 462
>gi|88809840|ref|ZP_01125346.1| tRNA modification GTPase [Synechococcus sp. WH 7805]
gi|88786224|gb|EAR17385.1| tRNA modification GTPase [Synechococcus sp. WH 7805]
Length = 460
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 190/460 (41%), Positives = 283/460 (61%), Gaps = 24/460 (5%)
Query: 107 GAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGN-VVDE 165
G + ++RLSGP A V K + G W SH V YG VL + +DE
Sbjct: 23 GGIAVIRLSGPQAQSAV--------KAVTRIPGLQPWE--SHHVLYGHVLAAESDERIDE 72
Query: 166 VLAVPMLAPRSYTREDVVELQCHGSEVCLRRVL-RACLEAGATLAQPGEFTLRAFLNGRL 224
VL + MLAPRS+T EDVVE+ CHG + ++RVL R + G A PGEF+ RA LNGRL
Sbjct: 73 VLVLLMLAPRSFTGEDVVEIHCHGGVIAVQRVLARVLDQPGVRRALPGEFSQRAVLNGRL 132
Query: 225 DLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMP 284
DL++AE + L++A+S AA A+AG+ GG +T++R + ++ L+E+EAR+DF++++P
Sbjct: 133 DLTRAEAISDLVAARSQRAAQLAMAGVDGGIQKRITALRERLLDQLSELEARVDFEEDLP 192
Query: 285 PLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERA 344
PL+ + +++++ + ++ +E L+ GL++A+VGRPNVGKSSLLN S+ ERA
Sbjct: 193 PLDGSALLEELQMVRCQLQQLVEDGQVGAALRQGLRVALVGRPNVGKSSLLNRLSRRERA 252
Query: 345 IVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMT 404
IVT++ GTTRD++E+ + + GVP+TLLDTAGIR T D VE++G+ RS AD++++
Sbjct: 253 IVTDLPGTTRDLLESEIVLEGVPITLLDTAGIRATTDAVEQLGIARSHDALASADLVLLL 312
Query: 405 VSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVF 464
GWT +D L R+ + P +LV NK+D A S+ ++ ++ D V
Sbjct: 313 FDLSVGWTPDDEALRQRV-------PDAVPHLLVGNKVDLA--GSDALARLSSAAVD-VC 362
Query: 465 TCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEEL 524
A TG G +L A++K G + G ++NQRQ + + +AL R + L
Sbjct: 363 LSANTGAGEAELVQAMLKRCG--ALTDGSLLLSLNQRQADLAQQAADALARSAQVAADGL 420
Query: 525 PLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
P DFWTIDLR A +LG+I+GE+++E VL IF +FCIGK
Sbjct: 421 PWDFWTIDLRQAIRSLGEITGEELTESVLDRIFSRFCIGK 460
>gi|410453619|ref|ZP_11307567.1| tRNA modification GTPase TrmE [Bacillus bataviensis LMG 21833]
gi|409932974|gb|EKN69922.1| tRNA modification GTPase TrmE [Bacillus bataviensis LMG 21833]
Length = 460
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 194/477 (40%), Positives = 278/477 (58%), Gaps = 23/477 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG A+ I ++FK + K+ SH +
Sbjct: 3 FDTIAAISTPMG--EGAIAIVRLSGDDAIQIADKLFKGIGGKR-------LMEVASHTIH 53
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +LD G VV+EV+ M P+++T+EDVVE+ CHG V + RVL+ L+ GA LA+P
Sbjct: 54 YGHLLDAKGEVVEEVMVSVMKGPKTFTKEDVVEINCHGGIVSVNRVLQHVLKNGARLAEP 113
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DLSQAE V LI AK+ A + AL ++G S LV +R + +E+L
Sbjct: 114 GEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNLALGQMEGRLSKLVRRLRQEILEVLA 173
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+E +D+ D++ + ++++K H + ++++ L+T+ K+L+ GL AIVGRPNV
Sbjct: 174 HVEVNIDYPEYDDVEEMTHKMLLEKAHFVREEIKKLLQTSEQGKILREGLSTAIVGRPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ LLDTAGIRET+DIVE+IGVE
Sbjct: 234 GKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLLDTAGIRETEDIVERIGVE 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS V AD+I++ ++ D T ED L ++ +I+++NK D
Sbjct: 294 RSRQVLNEADLILLVLNYSDRLTIEDEHLFEVVK--------GMDVIVIVNKTDLPQQID 345
Query: 450 NEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
E +V +H V T + +GI +LE AI + I G + N R L
Sbjct: 346 ME--RVNELAKEHSLVTTSLLEDRGIDELEEAIASLFFAGSIDTGDLTYVSNSRHIALLN 403
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + + E P+D IDL LG+I G+ + E ++ +F +FC+GK
Sbjct: 404 ISLQTIEDAIEGAEMGTPIDIVQIDLTRTWELLGEIIGDSVHESLIDQLFSQFCLGK 460
>gi|118444248|ref|YP_876979.1| tRNA modification GTPase TrmE [Clostridium novyi NT]
gi|166200476|sp|A0PX77.1|MNME_CLONN RecName: Full=tRNA modification GTPase MnmE
gi|118134704|gb|ABK61748.1| tRNA modification GTPase TrmE [Clostridium novyi NT]
Length = 459
Score = 315 bits (807), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 184/475 (38%), Positives = 280/475 (58%), Gaps = 21/475 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G V I+R+SG A+ IV +F +K + S R
Sbjct: 4 FDTIAAIATNLG--ESGVSIIRVSGDKALSIVSSIFTGKNDRKLDDIRTYSMR------- 54
Query: 152 YGVVLDRH-GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D+ +DEV+ M PRS+T EDVVE+ CHG V +R+L + AGA LA
Sbjct: 55 YGFIIDKDTKEKLDEVIVSYMKGPRSFTAEDVVEINCHGGVVVTKRILEEVVAAGARLAS 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI+AK+ +A +AL +G S + +R K +E++
Sbjct: 115 PGEFTKRAFLNGRIDLSQAEAVIDLINAKTELSAKSALEQSEGKLSREIGKIRNKLLEII 174
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IEA +D+ +D++ + + + + ++++ L+ A+ K+L+ GL IVG+PNV
Sbjct: 175 ASIEATVDYPEDDLEEVTSEKGRESVSKLLDEIDSLLDHADEGKILREGLNTVIVGKPNV 234
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA RAIVT++ GTTRDVIE +++ G+P+ ++DTAGIR+TDD+VEKIGVE
Sbjct: 235 GKSSLLNALLMETRAIVTDVPGTTRDVIEEYMSIDGIPIKIIDTAGIRDTDDVVEKIGVE 294
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S +D+ ++ + G ED E++N I+ K I+++NK+D
Sbjct: 295 KSREKINNSDLTVLVLDNSRGLDDEDKEIINFIKDKK--------YIVLLNKMDLESKID 346
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
E K NS + A TG G+ + I ++ ++ A N R E L+R
Sbjct: 347 KEALKELNS-KYIIEISAKTGSGLDKFKEVIKELFFSGKV-ASKDVMITNTRHKEALIRA 404
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
KE+L K++++ +D +IDLR+A +LG+I+G+ + E+++ IF KFC+GK
Sbjct: 405 KESLEASKNALDNTFAIDLASIDLRNAWKSLGEINGDTVEEDIIDKIFSKFCLGK 459
>gi|403385770|ref|ZP_10927827.1| tRNA modification GTPase trmE [Kurthia sp. JC30]
Length = 461
Score = 315 bits (806), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 187/476 (39%), Positives = 281/476 (59%), Gaps = 20/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG AV I ++F SG TSH +
Sbjct: 3 FDTIAAISTPMG--EGAIAIVRLSGDEAVAIADKIFHS-------PSGKKLVDCTSHTIH 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG + + G VV+EV+ M P+++TREDVVE+ CHG V + RVL+ L GA LA+
Sbjct: 54 YGHLKEVDTGEVVEEVMLSLMRGPKTFTREDVVEINCHGGLVTVNRVLQLVLRNGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL + G S L+ S+R K +E+L
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMDGKLSRLIKSLRQKILEVL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + + L+++ + ++++ L T++ K+L+ GL I+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEVTIPLMLNNCGWVEKEIDRLLNTSSQGKILREGLSTVILGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + +AIVT+IAGTTRD+IE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 234 VGKSSLLNNLVQENKAIVTDIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD+ ++ V+ + + ED L ++ I+V+NK D
Sbjct: 294 ERSREALRDADLTLLLVNYNEALSPEDERLFETVK--------HMNYIVVVNKTDLEQRI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ + + ++ + T + +GI+ LE AI ++ ++ A + N R L +
Sbjct: 346 DLDRVRELAAGHEVITTSILQDEGIEQLEEAIARMFFSGEVEAEDPTYVSNARHIALLHQ 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+ + ++ E +P+D +DL A LG+I GE + +E+++ +F +FC+GK
Sbjct: 406 AKDRIRDAINAAEAGIPVDMIQMDLTHAWEILGEIIGETVQDELINQLFSQFCLGK 461
>gi|456013149|gb|EMF46818.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Planococcus
halocryophilus Or1]
Length = 461
Score = 315 bits (806), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 191/476 (40%), Positives = 274/476 (57%), Gaps = 20/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T G GA+ IVRLSGP AV I ++F+ K S + H +
Sbjct: 3 FDTIAAISTPSG--EGAIAIVRLSGPEAVAIADKLFRAPSNKALASQAT-------HTIH 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG + D G + +EV+ M AP+++TREDV+E+ CHG V + RVL L AGA LA+
Sbjct: 54 YGHLEDPATGEIAEEVMVSLMKAPKTFTREDVIEINCHGGIVSVNRVLELALRAGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A D AL ++G S L+ ++R +E +
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMDVALNQMEGKLSKLIGTLRQALLESI 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + ++++K + +++ L+T++ K+L+ GL I+GRPN
Sbjct: 174 AQMEVNIDYPEYDDVEEMTRPIMLEKSKWVRLEIDKLLQTSSQGKILREGLSTVILGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + +AIVTEIAGTTRD+IE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 234 VGKSSLLNSLVQENKAIVTEIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I+ ++ + T ED L ++ I+VINK D
Sbjct: 294 ERSRKVLKEADLILYVLNYAEALTPEDELLFETVK--------DMDYIVVINKTDLPQKI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + V T V +GI LE AI + +I AG + N R L +
Sbjct: 346 DLEQVQKLAGDKLLVTTSLVEEEGIDQLEEAIAALFFKGEIEAGDMTYVSNVRHIALLHQ 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + + E E+P+D ID+ LG+I G+ + +L+ +F +FC+GK
Sbjct: 406 AHKTISDAIEAAEMEVPVDMIQIDVTRTWELLGEIIGDTADDGLLNQLFSQFCLGK 461
>gi|168187283|ref|ZP_02621918.1| tRNA modification GTPase TrmE [Clostridium botulinum C str. Eklund]
gi|169294804|gb|EDS76937.1| tRNA modification GTPase TrmE [Clostridium botulinum C str. Eklund]
Length = 459
Score = 314 bits (805), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 183/475 (38%), Positives = 281/475 (59%), Gaps = 21/475 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G V I+R+SG A+ IV +F +K + S R
Sbjct: 4 FDTIAAIATNLG--ESGVSIIRVSGDKALSIVSSIFSGKNDRKLDDIRTYSMR------- 54
Query: 152 YGVVLDRH-GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D+ +DEV+ M PRS+T EDVVE+ CHG V +R+L ++AGA LA
Sbjct: 55 YGFIIDKDTKEKLDEVIVSYMKGPRSFTAEDVVEINCHGGVVVTKRILEEVVKAGARLAS 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LISAK+ +A +AL +G S + +R K +E++
Sbjct: 115 PGEFTKRAFLNGRIDLSQAEAVIDLISAKTELSAKSALEQSEGKLSREIGKIRNKLLEII 174
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IEA +D+ +D++ + + + + ++++ L A+ K+L+ GL IVG+PNV
Sbjct: 175 ASIEATVDYPEDDLEEVTSEKGRESVSKLVDEIDSLLAHADEGKILREGLNTVIVGKPNV 234
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA RAIVT++ GTTRDVIE +++ G+P+ ++DTAGIR+TDD+VEKIGVE
Sbjct: 235 GKSSLLNALLMETRAIVTDVPGTTRDVIEEYMSIEGIPIKIVDTAGIRDTDDVVEKIGVE 294
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S +D+ ++ + +ED E++N I+ K I+++NK+D
Sbjct: 295 KSREKINSSDLTVLVLDNSRSLDNEDKEIINFIKDKK--------YIVLLNKVDLESKID 346
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
E K NS + A TG G+ + I ++ ++ + N R E L+R
Sbjct: 347 KEALKELNS-KYIIEISAKTGSGLDKFKEVIKELFFSGKVTSKD-VMITNTRHKEALIRA 404
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K++L K+++E+ +D +IDLR+A +LG+I+G+ + E+++ IF KFC+GK
Sbjct: 405 KDSLEASKNALEDTFAIDLASIDLRNAWKSLGEINGDTVEEDIIDKIFSKFCLGK 459
>gi|392940017|ref|ZP_10305661.1| tRNA modification GTPase TrmE [Thermoanaerobacter siderophilus SR4]
gi|392291767|gb|EIW00211.1| tRNA modification GTPase TrmE [Thermoanaerobacter siderophilus SR4]
Length = 462
Score = 314 bits (805), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 186/477 (38%), Positives = 278/477 (58%), Gaps = 23/477 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T G +GIVR+SG A++I+ ++FKP K K K + SH +
Sbjct: 5 FDTIAAISTFPG--EAGIGIVRISGDDALEIISKIFKPYKPKNIK-------KVKSHTLH 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D V DEVL M P +YTRED+VE+ CHG V ++L L+ GA LA+
Sbjct: 56 YGHIVDPETEEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQGARLAE 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I+AK++ A A + G + ++ K + LL
Sbjct: 116 PGEFTKRAFLNGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIGQKMKELKDKIMGLL 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+ A +DF +D++ L +++ + +D++ + ++ ++++ GL+ AI+G+PNV
Sbjct: 176 VHLLALIDFPEDDVEELERKEMLETAKEIVEDIDKLIVSSESGRIIREGLKTAIIGKPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA K RAIVT+I GTTRD+IE V V G+P+ L+DTAGIR+TD++VEKIGV
Sbjct: 236 GKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVA 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S+ V AD+I+ + A T ED E+ + + ++ V+NKID P
Sbjct: 296 KSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKN--------IVFVLNKIDL-PKKI 346
Query: 450 NEWNKVGNSFNDHVFTCAVTGQ--GIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+E ++ N D + T + G+Q+LE I +V I N R E L+
Sbjct: 347 DE-KELKNLTKDGIIIEVSTAEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKEALI 405
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+ + + +IE E D TIDL A +G+I+GE +E++++ IF +FC+GK
Sbjct: 406 NAKKYMESVVEAIEREYSEDLITIDLNAALEQIGKITGETATEDLINQIFERFCVGK 462
>gi|20809125|ref|NP_624296.1| tRNA modification GTPase TrmE [Thermoanaerobacter tengcongensis
MB4]
gi|25009498|sp|Q8R6K8.1|MNME_THETN RecName: Full=tRNA modification GTPase MnmE
gi|20517805|gb|AAM25900.1| predicted GTPase [Thermoanaerobacter tengcongensis MB4]
Length = 460
Score = 314 bits (805), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 190/477 (39%), Positives = 280/477 (58%), Gaps = 23/477 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T G +GIVR+SG A++I+ ++F+P +KK KS SH +
Sbjct: 3 FDTIAAISTFPG--EAGIGIVRISGDEALEIISKIFRPFRKKDIKSV-------KSHTIH 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V DEVL M P +YTREDVVE+ CHG V ++L L+ GA LA+
Sbjct: 54 YGHIVDPETGEVYDEVLVTVMRKPNTYTREDVVEINCHGGIVVSSKILELVLKHGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I++K++ A A + G + ++ K +ELL
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVIDIITSKTMLANRYAQKQLAGVLGQKMKDLKNKIMELL 173
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+ + A +DF ++++ L + + + D+E + ++ ++++ GL+ AI+G+PNV
Sbjct: 174 SHLLALIDFPEEDVEELEREEIKRRAKDILNDIEYLIASSESGRIIREGLKTAIIGKPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA K RAIVT+I GTTRDVIE + + G+P+ L+DTAGIR TD++VEKIGVE
Sbjct: 234 GKSSLLNALLKQNRAIVTDIPGTTRDVIEEYMNIKGIPIKLIDTAGIRHTDELVEKIGVE 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S+ V AD+I+ + A T ED E+ + + S +I V+NK+D
Sbjct: 294 KSKEVLAEADLILFVLDASRDLTKEDYEIFDIL--------SGKNIIFVLNKVDLPKKID 345
Query: 450 NEWNK--VGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
E K VGN V T T G+ LE+ I +V ++ A N R E L+
Sbjct: 346 EEELKKLVGNGIIVEVSTVERT--GLDKLESEIYNLVFKGKVSATEEEIITNARHREVLI 403
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+ + + +IE+ D TID+ A +G+I+GE +E+V++ IF +FC+GK
Sbjct: 404 NAKKHMESVIEAIEKGYSEDLITIDVNGALNEIGKITGETATEDVINQIFERFCVGK 460
>gi|357039055|ref|ZP_09100850.1| tRNA modification GTPase mnmE [Desulfotomaculum gibsoniae DSM 7213]
gi|355358519|gb|EHG06285.1| tRNA modification GTPase mnmE [Desulfotomaculum gibsoniae DSM 7213]
Length = 462
Score = 314 bits (805), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 181/477 (37%), Positives = 277/477 (58%), Gaps = 23/477 (4%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
TIAAI T +G G +GIVR+SGP A +I+ +F +K +W + + Y
Sbjct: 4 DTIAAISTPLG--EGGIGIVRISGPEATEIIDNIFHTRQKT--------NWHQQTFKLIY 53
Query: 153 GVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
G + D G ++DEVL M AP SYT+EDV+E+ CHG + +R++L L+ GA LA+P
Sbjct: 54 GYIHDPDSGEIIDEVLVGVMRAPHSYTKEDVIEINCHGGALPMRKILELVLKMGARLAEP 113
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGRLDL QAE++ +I A + A A+ + GG S+ + ++ K +E+
Sbjct: 114 GEFTKRAFLNGRLDLIQAESIIDIIRANTDDAMRLAMGQLSGGLSNKINDIQQKLLEITA 173
Query: 272 EIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
IEA +DF ++++ NL+ V + + Q++ LE A ++ + GL+ I+G+PNVG
Sbjct: 174 LIEANIDFPEEDVEEYNLSEVQKSVEQIEQEINELLENAETGRIYREGLRTVIIGKPNVG 233
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLN K RAIVT+I GTTRD+IE + + GVP+ ++DTAGIRET+D++EKIGV++
Sbjct: 234 KSSLLNVLLKENRAIVTDIPGTTRDLIEEVINIGGVPLKIIDTAGIRETEDLIEKIGVQK 293
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
+ AD IIM A DG S D +++ +++ + + V+NKID ++
Sbjct: 294 TRESIDIADFIIMVFDAQDGLNSADDQIIELVKTKRG--------VKVLNKIDIQDMKNS 345
Query: 451 EWNKVGNSFNDH---VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ + + H V A GI+ LE I+ +V ++ N R QL+
Sbjct: 346 DISYKLTNILPHWPLVDISAFEETGIEKLEKEIVSMVTEGKVVPKDGVMISNIRHKNQLV 405
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ L +K +I + + +D ID+RDA A+ +I+G I+E ++ IF FCIGK
Sbjct: 406 KAVNHLRDVKEAISQGVSIDLIAIDIRDAWEAVSEINGTAITEHIVDKIFSDFCIGK 462
>gi|158321890|ref|YP_001514397.1| tRNA modification GTPase TrmE [Alkaliphilus oremlandii OhILAs]
gi|166988168|sp|A8MKR9.1|MNME_ALKOO RecName: Full=tRNA modification GTPase MnmE
gi|158142089|gb|ABW20401.1| tRNA modification GTPase TrmE [Alkaliphilus oremlandii OhILAs]
Length = 461
Score = 314 bits (805), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 186/476 (39%), Positives = 291/476 (61%), Gaps = 23/476 (4%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
TIAAI T+ G +GIVR+SG A++++ ++FK K K S S R T Y
Sbjct: 5 DTIAAIATAPG--EAGIGIVRISGEKAIELIDKIFKS--KDHKVLSQYKSRRIT-----Y 55
Query: 153 GVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
G ++D + VVDEVL M P +YTRED+VE+ CHG + ++ +L L GA +A+P
Sbjct: 56 GHIIDPKTEKVVDEVLVSYMKGPNTYTREDIVEINCHGGMIPVKNILELVLRVGARMAEP 115
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE + LISAK+ D AL+ ++G S V VR K +++L
Sbjct: 116 GEFTKRAFLNGRIDLAQAEAIMDLISAKTEKGFDVALSQLEGSLSKKVAKVREKLLDMLA 175
Query: 272 EIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+E +DF +D++ + L+ +++K + D++ L+TA+ K+++ GL IVG+PNVG
Sbjct: 176 HVEVSIDFAEDDVDEVALDYLLNKSLEVEGDIQKLLDTADTGKIIREGLSTVIVGKPNVG 235
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNA + RAIVT++ GTTRD+IE + + G+P+ L+DTAGIR+T+DIVEKIGVER
Sbjct: 236 KSSLLNALVRESRAIVTDVPGTTRDIIEEHLNIKGIPLRLIDTAGIRDTEDIVEKIGVER 295
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S+ + AD+II+ + A T ED ++ I+ NK++ +++INK D +
Sbjct: 296 SKELFNLADLIIVMLDASRELTEEDLRIIELIE-NKRA-------LVIINKTDLQQKLN- 346
Query: 451 EWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ D + + G++++E A+ ++V A N R L R
Sbjct: 347 -LTPIQEIIQDKKIIKVSLIEEIGLEEIEDALAEMVYKGGAKAKDSLLVTNVRHKNALER 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++++ +IE++LPLDF +D++++ ALG+I+G+ + E+++ +IF FCIGK
Sbjct: 406 ALDSIIDGTKAIEQKLPLDFVEVDIKNSWKALGEITGDTVEEDIIDHIFKNFCIGK 461
>gi|375092569|ref|ZP_09738847.1| tRNA modification GTPase TrmE [Helcococcus kunzii ATCC 51366]
gi|374560738|gb|EHR32095.1| tRNA modification GTPase TrmE [Helcococcus kunzii ATCC 51366]
Length = 458
Score = 314 bits (805), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 184/475 (38%), Positives = 279/475 (58%), Gaps = 25/475 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+ G +GIVR+SG + DI VF+ KK++ + + + YG
Sbjct: 5 TIAAISTATG--EAGIGIVRMSGEKSFDIAKEVFRNFKKEQVN-------KFENRKMNYG 55
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ + ++DEVL V M P++YTRED+VE+ CHG + +++VL L+ GA +A+ GE
Sbjct: 56 YIFNNE-EMIDEVLMVYMKGPKTYTREDIVEIYCHGGYIAVKKVLDTLLKKGAYIAERGE 114
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGRLDLSQAE V LI AK+ + +A+L ++G +S V ++ K ++L+ +
Sbjct: 115 FTKRAFLNGRLDLSQAEAVIDLIDAKTDKSYEASLLQLKGSVASKVKKIKEKMLDLMARV 174
Query: 274 EARLDFDDEMPPLNLNLVMDKIHAMSQDVENALET----ANYDKLLQSGLQIAIVGRPNV 329
E ++F M +L ++ I+ S+ + N L T AN ++++ G++ AI+G+PNV
Sbjct: 175 EFSINF---MEDYEDDLPVEPIYEKSEVIVNELNTLINSANQGRIIKEGIKTAIIGKPNV 231
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA K RAIVT++AGTTRD IE S+ + GV V ++DTAGIR TDDIVE IGVE
Sbjct: 232 GKSSLLNALLKENRAIVTDVAGTTRDTIEESIDLGGVSVNIIDTAGIRSTDDIVESIGVE 291
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S + +D++I + ED +++ + +NKKS I+++NK D A
Sbjct: 292 KSLKITEESDLVIAIFDVSKPFDDEDEKII-ELLNNKKS-------IILLNKHDLEVKAD 343
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
N+ + + +GIQ+LE AI+ + +I N R + L++
Sbjct: 344 KTLIYEKCDKNNIIEMSIIEDKGIQELEDAILDMFFDGEIQVNNTIMITNIRHRDLLVKA 403
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++ ++ I+ +PLD ID R+A LG+I+GE I E+VL IF FCIGK
Sbjct: 404 RDNIISAVEGIKMGMPLDATEIDFRNAYTQLGEITGETIEEDVLDKIFKDFCIGK 458
>gi|328958785|ref|YP_004376171.1| tRNA modification GTPase MnmE [Carnobacterium sp. 17-4]
gi|328675109|gb|AEB31155.1| tRNA modification GTPase MnmE [Carnobacterium sp. 17-4]
Length = 462
Score = 314 bits (804), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 188/479 (39%), Positives = 278/479 (58%), Gaps = 27/479 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSW-RPTSH 148
F TIAAI T PPG A+GIVRLSG A++I RV+K SGS + SH
Sbjct: 5 FETIAAIST----PPGEGAIGIVRLSGEQAIEIADRVYK---------SGSKALAEQKSH 51
Query: 149 VVEYGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
+ YG + + N +DEV+ M P+++TREDVVE+ CHG + +VL+ L+ GA
Sbjct: 52 TIHYGHIENPKTNETIDEVMVSVMREPKTFTREDVVEINCHGGITSVNQVLQCVLQNGAR 111
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
LA+PGEFT RAFLNGR+DLSQAE V LI AK+ A AL + G S+L+ ++R +
Sbjct: 112 LAEPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMHVALKQLDGNLSNLIRNLRLDIL 171
Query: 268 ELLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVG 325
+ L ++E +D+ D++ + L+++K + ++ LETA+ K+L+ GL AI+G
Sbjct: 172 DTLAQVEVNIDYPEYDDVEEMTSKLLIEKAKLVKASIQQLLETASQGKILRDGLATAIIG 231
Query: 326 RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEK 385
RPNVGKSSLLN E+AIVT+IAGTTRDVIE ++V GVP+ L+DTAGIRET+DI+E+
Sbjct: 232 RPNVGKSSLLNYLLDEEKAIVTDIAGTTRDVIEEYISVKGVPLKLVDTAGIRETEDIIER 291
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445
IGVERS AD++++ + + T ED L+ + + I+++NK+D
Sbjct: 292 IGVERSRQALSDADLVLLVFNQSEPLTIEDKALIEATSQHHR--------IIILNKMDLP 343
Query: 446 PSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+V V T ++ G+ LE I + Q + N R
Sbjct: 344 NKLDLTELEVLVDPESIVKTSILSKSGVDVLEKKIAALFFTGQTGERDATYVSNVRHIAL 403
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L +EAL + + +E +P+D ID+ LG+I+G+ + +E+L+ +F +FC+GK
Sbjct: 404 LNDAEEALDEVINGVEAGMPVDLIQIDMTRCWDLLGEITGDSVQDELLTQLFSQFCLGK 462
>gi|332983463|ref|YP_004464904.1| tRNA modification GTPase trmE [Mahella australiensis 50-1 BON]
gi|332701141|gb|AEE98082.1| tRNA modification GTPase trmE [Mahella australiensis 50-1 BON]
Length = 460
Score = 314 bits (804), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 194/477 (40%), Positives = 279/477 (58%), Gaps = 25/477 (5%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
+TIAAI T IG G +GIVRLSGP A+DI +F +K +K K + P ++ Y
Sbjct: 4 ATIAAISTPIG--EGGIGIVRLSGPKAIDIADSIFINIKGRKIKDA------PNRSIL-Y 54
Query: 153 GVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
G + D G +DEVL M P SYT EDVVE+ HG + LRRVL + GA LAQP
Sbjct: 55 GHIKDPDTGRDIDEVLVSIMRGPHSYTGEDVVEISGHGGMLPLRRVLEVAVREGAVLAQP 114
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE+V +ISAK+ A +++ ++G S + +R +++LT
Sbjct: 115 GEFTKRAFLNGRIDLAQAESVMDIISAKTDVALTSSVMQLEGKLSRSIEKIRVALLDVLT 174
Query: 272 EIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
IEA +D+ ++++ L+ + K+ +E L TA+ ++++ GL+ AI+GRPNVG
Sbjct: 175 HIEALIDYPEEDVDELSTKDMRKKLADEYDSIEKLLATADTGRIIREGLKTAIIGRPNVG 234
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNA K++RAIVT+I GTTRD+IE V V G+ + ++DTAGIRE D +E+IG+ER
Sbjct: 235 KSSLLNALLKADRAIVTDIPGTTRDIIEDYVNVNGIALNIIDTAGIREAADEIERIGIER 294
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
+ AD++I + +D + + I S K I+V+NK D +
Sbjct: 295 TRDTVYRADLVIFVLDGSQPLHQDDRAIASLISSKKA--------IVVLNKSDLGRVVTE 346
Query: 451 -EWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
E N V D + G G+ DLE I +V + A N R E L+
Sbjct: 347 AEVNAV---LPDAPVIEMSLKEGYGLDDLEGTITDMVYHGKAIASDEAMITNVRHKEALI 403
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
EAL R SI++ +P+D +IDL+DA A+G ISG+ + +EV+ IF +FC+GK
Sbjct: 404 SAAEALQRCLFSIDDGMPMDLVSIDLKDAIEAMGLISGKTVEDEVVDRIFERFCVGK 460
>gi|126651990|ref|ZP_01724182.1| tRNA modification GTPase [Bacillus sp. B14905]
gi|126591259|gb|EAZ85368.1| tRNA modification GTPase [Bacillus sp. B14905]
Length = 461
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 190/478 (39%), Positives = 279/478 (58%), Gaps = 24/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG AV I ++FK G SH +
Sbjct: 3 FDTIAAISTPMG--EGAIAIVRLSGDEAVAIADKIFKS-------PGGKSLTTKDSHTIH 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + VV+EV+ M P+++TREDVVE+ CHG V + RVL+ L GA LA+
Sbjct: 54 YGHLVDPKTKEVVEEVMLSLMRGPKTFTREDVVEINCHGGLVSVNRVLQLALTNGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL + G S L+ +R +E L
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMDGKLSRLIGDLRQALLETL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + + ++++K + ++ L+T++ K+L+ GL I+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTVPVLVEKCTWVRDEIIKLLQTSSQGKILREGLSTVILGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + +AIVT+IAGTTRD+IE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 234 VGKSSLLNSLVQENKAIVTDIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS GAD+I+ ++ D T+ED L I+ + I++INK D P
Sbjct: 294 ERSREALRGADLILFVLNYADELTAEDERLFETIE--------AMDYIVIINKTDL-PQK 344
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
N +V H V T + +G+ +LE AI + Q+ AG + N R L
Sbjct: 345 IN-LARVKELAGKHRIVTTSLLQEEGVTELEEAIAALFFEGQLEAGDLTYVSNARHIALL 403
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + + ++ + +P+D ID+ LG+I G+ + E +++ +F +FC+GK
Sbjct: 404 HQAQATVEDAIAAAQAGVPVDMVQIDVTRTWELLGEIIGDTVQESLINQLFSQFCLGK 461
>gi|365901952|ref|ZP_09439775.1| tRNA modification GTPase TrmE [Lactobacillus malefermentans KCTC
3548]
Length = 463
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 191/483 (39%), Positives = 277/483 (57%), Gaps = 36/483 (7%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAA+ T PPG + I+R+SG A+ IV +V++ G + SH
Sbjct: 7 FDTIAAVAT----PPGEGGISIIRVSGEDAISIVEKVYR----------GKDLAKVASHT 52
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG +++ + + VDEV+ M AP++YT+EDVVE+ CHG V +L+ L GA +
Sbjct: 53 INYGHIIEPKTKDEVDEVMVSVMRAPKTYTKEDVVEVNCHGGLVATNEILQLILSNGARM 112
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGRLDLSQAE V LI AK+ + AL + G S L+ ++R +E
Sbjct: 113 AEPGEFTKRAFLNGRLDLSQAEAVMDLIRAKTDKSMKVALNQLDGSLSRLIKNLRQDILE 172
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L ++E +D+ D++ L L+ +K + Q +E L+TA K+L+ GL AIVGR
Sbjct: 173 VLAQVEVNIDYPEYDDVETLTTKLLREKATEVRQSIERLLKTAKQGKVLRDGLATAIVGR 232
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN ++AIVT++AGTTRDVIE V V GVP+ L+DTAGIR+T+D VEKI
Sbjct: 233 PNVGKSSLLNHLLHEDKAIVTDVAGTTRDVIEEFVNVRGVPLKLVDTAGIRDTEDKVEKI 292
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS AD++++ ++A + T ED LL+ +K+ ++++NK D
Sbjct: 293 GVERSRKAINTADLVLVVINASEPLTDEDRNLLDITDDDKR--------LIILNKTDLER 344
Query: 447 SASNE----WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQR 501
SNE W K D + T +T QG+ LE I + I + V N R
Sbjct: 345 KVSNEDLADWAKP----EDIIGTSVLTNQGLDQLEERIASLFFDEGIESNQNSVMVTNAR 400
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
L + +AL + I +P+D ID+ LG+I+G+ +E+L +F +FC
Sbjct: 401 HIGLLNQANDALGDVLHGIAAGMPVDLVQIDMTRCWNLLGEITGDSYQDELLDQLFSQFC 460
Query: 562 IGK 564
+GK
Sbjct: 461 VGK 463
>gi|366090475|ref|ZP_09456841.1| tRNA modification GTPase TrmE [Lactobacillus acidipiscis KCTC
13900]
Length = 462
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 181/478 (37%), Positives = 280/478 (58%), Gaps = 27/478 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
+ TIAAI T PPG A+ IVR+SG ++++ ++FK G SH
Sbjct: 7 YDTIAAIST----PPGEGAISIVRMSGEESLEVAAKIFK----------GRNLQDVQSHT 52
Query: 150 VEYGVVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG V+D N +DEV+ M APR++TRED++E+ CHG V ++L+ L+ GA L
Sbjct: 53 INYGHVVDSETNEEIDEVMVSVMRAPRTFTREDIIEINCHGGIVPTNKILQLLLQNGARL 112
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFL+GR+DL+QAE+V LI AK+ + AAL + G S L+ ++R ++
Sbjct: 113 AEPGEFTKRAFLHGRIDLTQAESVMDLIRAKTDRSMKAALNQLDGNLSKLIKNLRQDILD 172
Query: 269 LLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L ++E +D+ D++ + N++ +K + +++ L TAN K+++ GL AIVGR
Sbjct: 173 TLAQVEVNIDYPEYDDVETMTTNILKEKAQEVKTRIQDLLRTANQGKIMRDGLATAIVGR 232
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN ++AIVT++AGTTRDVIE V + VP+ L+DTAGIR+T+D VEKI
Sbjct: 233 PNVGKSSLLNYLLHEDKAIVTDVAGTTRDVIEEYVNIRDVPLKLIDTAGIRDTEDKVEKI 292
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS AD++++ V+A + T ED +LL+ + K+ ++++NK D
Sbjct: 293 GVERSRKAIEQADLVMVLVNASEPLTKEDRKLLDLTKEKKR--------LVILNKTDLPQ 344
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
K + + + T + G+ +LE I K+ + N R L
Sbjct: 345 KIDMSEIKQLVAPEELLSTSVLKNDGLDELEERIAKMFFNGIENSQTTVMLTNSRHIALL 404
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K++L + I+E +P+D ID+ DA LG+I+G+ +E+L +F +FC+GK
Sbjct: 405 HQAKDSLEAVLRGIDEGMPVDLCQIDMTDAWDDLGEITGDSYKDELLDQLFSQFCLGK 462
>gi|161899035|ref|YP_077161.2| tRNA modification GTPase TrmE [Symbiobacterium thermophilum IAM
14863]
gi|205829222|sp|Q67J33.2|MNME_SYMTH RecName: Full=tRNA modification GTPase MnmE
Length = 457
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 197/476 (41%), Positives = 267/476 (56%), Gaps = 28/476 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T G G +GIVR+SG A+ + R+F+P ++ G R SH V YG
Sbjct: 5 TIAAIATGAG--EGGIGIVRISGADALQVAERIFRP-----RRGRPLGCRR--SHTVTYG 55
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
V+ G+ +DE LA+ M P SYT EDVVELQCHG ++ +RRVL L+AGA LA+PGE
Sbjct: 56 WVVTPGGDRIDEALALVMRGPHSYTGEDVVELQCHGGQLAVRRVLEQALQAGARLAEPGE 115
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGRLDLSQAE V LI AK+ A AA+A ++G + +R + +E++ +
Sbjct: 116 FTRRAFLNGRLDLSQAEAVVDLIRAKTDRAMAAAVAHLRGSLRQAIGRIRERLMEMMAHL 175
Query: 274 EARLDFDDEMPPLNLNLVMDKIHAMS-----QDVENALETANYDKLLQSGLQIAIVGRPN 328
EA +DF P L L + + A +VE L A ++L+ GL+ + GRPN
Sbjct: 176 EADIDF----PELELEVQTREEVAAGCAWCLGEVERLLGGARTGRILREGLRAVLAGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + RAIVT I GTTRDVI V + GVPV L DTAG+R TDD VE+IGV
Sbjct: 232 VGKSSLLNRLVRENRAIVTPIPGTTRDVIAEWVELGGVPVQLFDTAGLRPTDDPVERIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
R+ A ++++ V A G ED E ++++ + V NKID P+
Sbjct: 292 ARTHEALAQAHLVLVVVDAAAGLGPEDREWISQLPQG-------AARVGVANKIDLNPAF 344
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ V A TG+G LE + ++ G VN RQ E + R
Sbjct: 345 ELSALREALGGAPVVGVSAETGEGFDALEAEVARVAGAFDAS---EELLVNARQAEAIRR 401
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ L ++++E L + IDLR A +ALG+++GE EE+L IF +FCIGK
Sbjct: 402 ARNHLRDAQATLESGLGDELVAIDLRAAWMALGEVTGETAGEELLDQIFSRFCIGK 457
>gi|414154097|ref|ZP_11410417.1| tRNA modification GTPase MnmE [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
gi|411454282|emb|CCO08321.1| tRNA modification GTPase MnmE [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
Length = 461
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 189/475 (39%), Positives = 291/475 (61%), Gaps = 22/475 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI AI T +G G++G++R+SGP AV + RVF+P + + ++ + YG
Sbjct: 5 TIVAIATPLG--EGSIGVIRISGPEAVAVGRRVFQPKVNRH-------WYVQDNYKLVYG 55
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
V+D +G ++DEVL M PRS+T EDVVE+ CHG V LRRVL L GA LA+PG
Sbjct: 56 HVVDPANGEIIDEVLLSVMRGPRSFTAEDVVEISCHGGIVPLRRVLEVVLRQGARLAEPG 115
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EF+ RAFLNGRLDL+QAE+V +I AK+ A A A++ + G S + ++ + + LL
Sbjct: 116 EFSKRAFLNGRLDLAQAESVIDIIRAKTDAGAKIAISQLGGKLSQQINELQQELLGLLAG 175
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IEA +DF +D++P +L ++D+ A+ + + LE A K+ + GL+ IVG+PNVGK
Sbjct: 176 IEATIDFPEDDIPDESLQNMVDRCTALIKVFDQLLEHAATGKVYREGLRTVIVGKPNVGK 235
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLNA + +RAIVT+I GTTRDVIE + + GVP+ L+DTAG RET D+VE++GVE+S
Sbjct: 236 SSLLNALLREQRAIVTDIPGTTRDVIEEVINIKGVPLKLIDTAGFRETQDLVEQLGVEKS 295
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN- 450
A+ AD++++ + A G T +D ++++ ++ K ++++INKID S +
Sbjct: 296 RALLQQADLVLLVLDAATGLTDDDLQVVDLVKDKK--------VLVIINKIDIDRSLIDL 347
Query: 451 -EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+ ++ S++D + A G++ LE +I+ +V ++ A + N R L R
Sbjct: 348 RQLQQL-ISYSDILEISAQKNIGLERLEQSILNLVLAGKVTAADQIVVANSRHKNALERA 406
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
KE L + + +P D IDL+ A LG+I+G ++E+++ IF FCIGK
Sbjct: 407 KEHLEEARRGLLAAVPADLVAIDLKSAWEILGEITGSHVTEDLIDRIFADFCIGK 461
>gi|408409784|ref|ZP_11181062.1| tRNA modification GTPase TrmE [Lactobacillus sp. 66c]
gi|407876025|emb|CCK82868.1| tRNA modification GTPase TrmE [Lactobacillus sp. 66c]
Length = 461
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 184/477 (38%), Positives = 285/477 (59%), Gaps = 27/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G G + IVR+SG AV+I +VFK G + SH +
Sbjct: 8 FDTIAAISTPLG--EGGISIVRVSGEDAVEIANKVFK----------GKDLTQVASHTIN 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+A MLAP+++T+ED VE+ CHG V +L+ L GA +A
Sbjct: 56 YGHIVDPASGQVIDEVMASVMLAPKTFTKEDTVEINCHGGIVVTNDILQLLLANGARMAD 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V +I AK+ A A+ ++GG + + ++R + +++L
Sbjct: 116 PGEFTKRAFVNGRIDLTQAESVMDIIRAKTDKARQVAVKQLEGGLLTEIRALRQEILDVL 175
Query: 271 TEIEARLDF---DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
+E +D+ D+E + ++ +H++ + ++ LETA ++L++GL+ AIVGRP
Sbjct: 176 ANVEVNIDYPEYDEE--EVTGQKMLGCVHSVGEKIDKLLETAQEGQILRNGLKTAIVGRP 233
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN ++S++AIVT++AGTTRD +E V+V GVP+ L+DTAGI T+D VEKIG
Sbjct: 234 NVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTEDTVEKIG 293
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS+ AD+I++ + + T ED +LL K+ I+V+NK D
Sbjct: 294 VERSKKAIAKADLILLLLDSSQELTKEDRDLLAYTAGKKR--------IIVLNKTDLGAK 345
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
S E + +D + T + + + LE I K+ + + NQRQ L
Sbjct: 346 LSAE-QIAEETGSDVITTSILQKENLDGLENLIKKLFFKGIENSNDQVLVTNQRQAGLLA 404
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K+ L +++ +E +PLD ID A LG+I+GE +E+++++F +FC+GK
Sbjct: 405 KAKQQLADVETGLESGMPLDLVQIDFTGAWETLGEITGESAPDELINDLFSQFCLGK 461
>gi|414085791|ref|YP_006994505.1| tRNA modification GTPase TrmE [Carnobacterium maltaromaticum LMA28]
gi|412999381|emb|CCO13190.1| tRNA modification GTPase TrmE [Carnobacterium maltaromaticum LMA28]
Length = 462
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 195/483 (40%), Positives = 287/483 (59%), Gaps = 35/483 (7%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAA+ T PPG A+GIVRLSG A+ + +V++ KK + SH
Sbjct: 5 FDTIAAVST----PPGEGAIGIVRLSGEEALQVADKVYQAGTKKLVDVA--------SHT 52
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG + D + +DEV+ M +P+++TREDVVE+ CHG + +VL+ L+ GA L
Sbjct: 53 IHYGHIRDPKTSETIDEVMVSVMRSPKTFTREDVVEINCHGGITSVNQVLQIVLQNGARL 112
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQAE V LI AK+ A AL + G S+L+ ++R++ ++
Sbjct: 113 AEPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDKAMYLALQQLDGNLSTLIRNLRSEILD 172
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L ++E +D+ D++ L L+++K + + + L+TA+ K+L+ GL AI+GR
Sbjct: 173 TLAQVEVNIDYPEYDDVETLTARLLVEKAYHVKASINQLLQTASQGKILREGLATAIIGR 232
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN + E+AIVTEIAGTTRDVIE V V GVP+ L+DTAGIRET+DIVEKI
Sbjct: 233 PNVGKSSLLNFLLQEEKAIVTEIAGTTRDVIEEYVNVRGVPLKLVDTAGIRETEDIVEKI 292
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS AD++++ + + T ED L+ N + I+++NK+D P
Sbjct: 293 GVERSRQALQEADLVLLVFNQNEPLTLEDKLLIEATADNHR--------IIILNKMDL-P 343
Query: 447 SASN--EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRR---WAVNQR 501
+ + E + + + V T +T GI LE KI L A G R + N R
Sbjct: 344 NQLDLAELEGLVDPAS-IVKTSILTKSGIDVLEE---KIAALFFAGATGDRDATYVSNVR 399
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
L + AL + + IE ++P+D ID+ LG+I+G+ + +E+L+ +F +FC
Sbjct: 400 HIALLHDAEAALDEVINGIEADMPVDLVQIDMTRCWDLLGEITGDSVQDELLTQLFSQFC 459
Query: 562 IGK 564
+GK
Sbjct: 460 LGK 462
>gi|345020620|ref|ZP_08784233.1| tRNA modification GTPase TrmE [Ornithinibacillus scapharcae TW25]
Length = 459
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 191/476 (40%), Positives = 268/476 (56%), Gaps = 27/476 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI AI T IG GA+ IVRLSG A++I +++K G SH + YG
Sbjct: 6 TITAISTPIG--EGAISIVRLSGANAIEITSKIYK----------GKNLAEVDSHTIHYG 53
Query: 154 VVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D N V +EV+ M P+++TREDVVE+ CHG V + RVL L GA LA+PG
Sbjct: 54 KIIDPATNDVAEEVMVTVMRGPKTFTREDVVEINCHGGLVSVNRVLEIVLSQGARLAEPG 113
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQAE V LI AK+ A + AL + G SSL+ R +E +
Sbjct: 114 EFTKRAFLNGRIDLSQAEAVMDLIRAKTDKAMNVALKQMDGRLSSLIKKYRQSLLETVAH 173
Query: 273 IEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+E +D+ D++ ++ ++ K + ++E L A K+L+ G+ AI+GRPNVG
Sbjct: 174 VEVNIDYPEYDDVEEMSHEMMRQKTKEVHAEIEELLSVAKQGKILREGIATAIIGRPNVG 233
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNA + +AIVT+I GTTRD+IE V V G+P+ L+DTAGIRET+DIVE+IGVER
Sbjct: 234 KSSLLNALVQESKAIVTDIPGTTRDIIEEYVNVRGIPLRLVDTAGIRETEDIVERIGVER 293
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S AD+I+ ++ + ED L IQ I++INK D
Sbjct: 294 SRQALKEADLILFVLNYNEELNEEDLRLFEAIQ--------GLEYIVIINKTDLEQKLDL 345
Query: 451 EWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E KV D V T + +GI +LE AI +I +G + N R + L +
Sbjct: 346 E--KVKELVGDKRIVTTSLLMEEGIAELEGAIADSFFAGEIDSGDLTYVSNARHIQLLNQ 403
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+K+AL S+E +PLD ID+ LG+I G+ S+ ++ +F +FC+GK
Sbjct: 404 SKKALEDAMDSLEMGMPLDIVQIDVTRTWEFLGEIIGDTASDSLIDQLFSQFCLGK 459
>gi|160946598|ref|ZP_02093801.1| hypothetical protein PEPMIC_00556 [Parvimonas micra ATCC 33270]
gi|158446982|gb|EDP23977.1| tRNA modification GTPase TrmE [Parvimonas micra ATCC 33270]
Length = 468
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 182/473 (38%), Positives = 279/473 (58%), Gaps = 20/473 (4%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
+TI AI T+ G +GIVRLSG ++DIV FKP KK+ + + +++Y
Sbjct: 15 NTIVAIATATG--ESGIGIVRLSGEKSIDIVKNFFKPHDKKEID-------KKSDRMMKY 65
Query: 153 GVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
G + D+ ++DEV+ M AP +YTRE+VVE+ HG VCL+RVL CLE GA LA+ G
Sbjct: 66 GHIYDKD-ELIDEVMVCFMFAPHTYTRENVVEIFTHGGIVCLKRVLNLCLENGADLAEKG 124
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGRLDLSQAE V LI AK+ + +A+ ++G S + R + +++L+
Sbjct: 125 EFTKRAFLNGRLDLSQAEGVIDLIKAKTEFSHKSAINQLEGHLSKKIKEFREELLDILSF 184
Query: 273 IEARLDFDDEM-PPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
+E ++F ++M L + V+ K + ++E L +N K+L+ G+ ++I+G+PNVGK
Sbjct: 185 VEYSINFTEDMQEELPFDNVILKTEKLMAEMEELLGESNKGKILKDGINVSIIGKPNVGK 244
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLN + ERAIVT+IAGTTRD+I+ + + G+ + + DTAGIR+T D+VEKIGV++S
Sbjct: 245 SSLLNRILRQERAIVTDIAGTTRDLIKEDIELSGIKLNINDTAGIRDTADVVEKIGVQKS 304
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
+ +D+ ++ ED +++N ++T I ++NK+D + E
Sbjct: 305 IEASENSDLNLVLFDISRELDEEDEKIIN--------LANTTKSIGILNKVDLDKKLNEE 356
Query: 452 WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKE 511
K +F + + A+ +GI LE AI+ + +I + N R L + E
Sbjct: 357 KLKEKVNF-ELIEISALKNEGISKLEQAIIDMFFDGKIEIKDKALITNVRHENSLKSSLE 415
Query: 512 ALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + ++ +P+D +DLR A LG+I GE+ISE +L NIF FCIGK
Sbjct: 416 YLKSFYADLKNMVPIDCCEVDLRRAYEVLGEIIGENISENILDNIFSNFCIGK 468
>gi|342216438|ref|ZP_08709085.1| tRNA modification GTPase TrmE [Peptoniphilus sp. oral taxon 375
str. F0436]
gi|341587328|gb|EGS30728.1| tRNA modification GTPase TrmE [Peptoniphilus sp. oral taxon 375
str. F0436]
Length = 455
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 191/482 (39%), Positives = 286/482 (59%), Gaps = 41/482 (8%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+ G PG +GIVRLSG A++I ++F+ + +K + +++YG
Sbjct: 4 TIAAISTATG--PGGIGIVRLSGDQALEIGQKMFQTIDRKPLDLD-------KNRLLQYG 54
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
++D + V+DEVL V M P +YTRED+VE+ CHG + L +VL L GA +A+PGE
Sbjct: 55 HIMDSN-QVIDEVLTVSMKGPGTYTREDMVEIYCHGGRIALSKVLDYALRLGARMAEPGE 113
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGRLDLSQAE+V LI AKS A + L + G + K +E+ I
Sbjct: 114 FTKRAFLNGRLDLSQAESVIDLIEAKSNQAYEQGLLQLSGALGQEFREIEDKLMEVTGLI 173
Query: 274 EARLDF-DDEMPPLNLNLVMDKIHAMSQD----VENALETANYDKLLQSGLQIAIVGRPN 328
A +DF +D++ LN +K ++QD V + +++A+ K+L+ G++ IVG+PN
Sbjct: 174 VANIDFPEDDIELLN----REKFQELAQDLLDRVNHLIQSASRGKMLKDGIKTVIVGKPN 229
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN K +RAIVT+I GTTRD IE +++ V + ++DTAGIR+T+D VEKIGV
Sbjct: 230 VGKSSLLNVLLKEDRAIVTDIPGTTRDSIEEYISLDDVVLHIIDTAGIRQTEDKVEKIGV 289
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS A AD+I+ ED +L++ ++ K ++ ++NK
Sbjct: 290 ERSVAAMDQADIILALFDQSRPLDREDQDLMDLLKDRK--------VLYILNK------- 334
Query: 449 SNEWNKVGNSFND-----HVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQ 502
S+E K F D F+ +V +GIQDLE A+ I Q+ G N RQ
Sbjct: 335 SDEKGKWEQDFKDFFQGKETFSISVLNKEGIQDLEEALKNIYYDGQVDVQG-LAVTNLRQ 393
Query: 503 CEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCI 562
+ L RTK+++ +K +E ++P+D +D+R+A ++G+I+G+ ++E++L IF FCI
Sbjct: 394 LDALRRTKKSIEVIKDGVEMDVPMDCIEVDVREALNSIGEITGQTVTEDILDRIFHDFCI 453
Query: 563 GK 564
GK
Sbjct: 454 GK 455
>gi|300362683|ref|ZP_07058859.1| tRNA modification GTPase TrmE [Lactobacillus gasseri JV-V03]
gi|300353674|gb|EFJ69546.1| tRNA modification GTPase TrmE [Lactobacillus gasseri JV-V03]
Length = 461
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 182/476 (38%), Positives = 282/476 (59%), Gaps = 25/476 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T IG G + IVRLSG AV I ++FK G+ + +H +
Sbjct: 8 FDTIAAISTPIG--EGGISIVRLSGEDAVAIANKLFK----------GADLTKVPTHTIH 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + VVDE + + AP+++TRED+VE+ CHG + +L+ L GA +A
Sbjct: 56 YGHIVDPKTQEVVDETMVSVLRAPKTFTREDMVEINCHGGMIVTNDILQLLLANGARMAD 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V ++ AK+ + A+ + GG + ++R + ++ +
Sbjct: 116 PGEFTKRAFMNGRIDLTQAESVMDIVRAKTDKSRQVAMTQLAGGLLEKIKTMRQELLDTM 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
E +D+ + +M L + K + + +E L+TA K++++GL AIVGRPNV
Sbjct: 176 AHEEVNIDYPEYDMDDLTSQEMKKKAQEVLKQIEQLLQTAQEGKIIRNGLATAIVGRPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ++ ++AIVT+IAGTTRD +E V+V GVP+ L+DTAGI T+D VEKIGVE
Sbjct: 236 GKSSLLNYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTEDKVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ + A T+ED LL+ + +NKK I+++NK D S
Sbjct: 296 RSKKAIKEADLVLLILDASQDLTAEDKRLLD-LTANKKR-------IIILNKQDLGTKIS 347
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQD-LETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + N ++ + ++ Q D LE AI K+ + + NQRQ L +
Sbjct: 348 QEM--IKNLTDNPIIVTSILKQKNMDALENAIEKLFFSGIENSQNQILVTNQRQAGLLAK 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K++L + S I + +PLD IDL++A LG+I+GE +E+++ +F +FC+GK
Sbjct: 406 AKQSLEDVISGINDAMPLDLVQIDLKNAWDTLGEITGESAPDELITQLFSQFCLGK 461
>gi|345018965|ref|YP_004821318.1| tRNA modification GTPase mnmE [Thermoanaerobacter wiegelii Rt8.B1]
gi|344034308|gb|AEM80034.1| tRNA modification GTPase mnmE [Thermoanaerobacter wiegelii Rt8.B1]
Length = 462
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 186/477 (38%), Positives = 277/477 (58%), Gaps = 23/477 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T G +GIVR+SG A++I+ ++FKP K K K + SH +
Sbjct: 5 FDTIAAISTFPG--EAGIGIVRISGDDALEIISKIFKPYKPKDIK-------KVKSHTLH 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D V DEVL M P +YTRED+VE+ CHG V ++L L+ GA LA+
Sbjct: 56 YGHIVDPETEEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQGARLAE 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I+AK++ A A + G + ++ K + LL
Sbjct: 116 PGEFTKRAFLNGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIGQKMKELKDKIMGLL 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+ A +DF +D++ L +++ + +D++ + ++ ++++ GL+ AI+G+PNV
Sbjct: 176 VHLLALIDFPEDDVEELERKEMLETAKEIVEDIDKLIVSSESGRVIREGLKTAIIGKPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA K RAIVT+I GTTRD+IE V V G+P+ L+DTAGIR+TD++VEKIGV
Sbjct: 236 GKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVA 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S+ V AD+I+ + A T ED E+ + + ++ V+NKID P
Sbjct: 296 KSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKN--------IVFVLNKIDL-PKKI 346
Query: 450 NEWNKVGNSFNDHVF--TCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+E ++ N D + V G+Q+LE I +V I N R E L+
Sbjct: 347 DE-KELKNLTKDGIIIEVSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKEALI 405
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+ + + +IE E D TIDL A +G+I+GE +E++++ IF +FC+GK
Sbjct: 406 NAKKYMESVVEAIEREYSEDLITIDLNAALEQIGKITGETATEDLINQIFERFCVGK 462
>gi|409349181|ref|ZP_11232711.1| tRNA modification GTPase TrmE [Lactobacillus equicursoris CIP
110162]
gi|407878369|emb|CCK84769.1| tRNA modification GTPase TrmE [Lactobacillus equicursoris CIP
110162]
Length = 462
Score = 312 bits (800), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 185/479 (38%), Positives = 287/479 (59%), Gaps = 31/479 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G G + IVR+SG AV+I +VFK G + SH +
Sbjct: 9 FDTIAAISTPLG--EGGISIVRVSGEDAVEIANKVFK----------GKDLTQVASHTIN 56
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+A MLAP+++T+ED VE+ CHG V +L+ L GA +A
Sbjct: 57 YGHIVDPASGQVIDEVMASVMLAPKTFTKEDTVEINCHGGIVVTNDILQLLLANGARMAD 116
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V +I AK+ A A+ ++GG + + ++R + +++L
Sbjct: 117 PGEFTKRAFVNGRIDLTQAESVMDIIRAKTDKARQVAVKQLEGGLLTEIRALRQEILDVL 176
Query: 271 TEIEARLDF---DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
+E +D+ D+E + ++ +H++ + ++ LETA ++L++GL+ AIVGRP
Sbjct: 177 ANVEVNIDYPEYDEE--EVTGQKMLGCVHSVGEKIDKLLETAQEGQILRNGLKTAIVGRP 234
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN ++S++AIVT++AGTTRD +E V+V GVP+ L+DTAGI T+D VEKIG
Sbjct: 235 NVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTEDTVEKIG 294
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP- 446
VERS+ AD+I++ + + T ED +LL K+ I+V+NK D
Sbjct: 295 VERSKKAIEKADLILLLLDSSQELTKEDRDLLAYTAGKKR--------IIVLNKTDLGAK 346
Query: 447 -SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
SA+ + G +D + T + + + LE I K+ + + NQRQ
Sbjct: 347 LSAAQIAEETG---SDVITTSILQKENLDGLENLIKKLFFKGIENSNDQVLVTNQRQAGL 403
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + K+ L +++ +E +PLD ID A LG+I+GE +E+++++F +FC+GK
Sbjct: 404 LAKAKQQLADVETGLESGMPLDLVQIDFTGAWETLGEITGESAPDELINDLFSQFCLGK 462
>gi|326390368|ref|ZP_08211927.1| tRNA modification GTPase TrmE [Thermoanaerobacter ethanolicus JW
200]
gi|325993645|gb|EGD52078.1| tRNA modification GTPase TrmE [Thermoanaerobacter ethanolicus JW
200]
Length = 462
Score = 312 bits (800), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 186/477 (38%), Positives = 276/477 (57%), Gaps = 23/477 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T G +GIVR+SG A++I+ ++FKP K K K + SH +
Sbjct: 5 FDTIAAISTFPG--EAGIGIVRISGDDALEIISKIFKPYKPKNIK-------KVKSHTLH 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D V DEVL M P +YTRED+VE+ CHG V ++L L+ GA LA+
Sbjct: 56 YGHIVDPETEEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQGARLAE 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I+AK++ A A + G + ++ K + LL
Sbjct: 116 PGEFTKRAFLNGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIGQKMKELKDKIMGLL 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+ A +DF +D++ L +++ + +D++ + ++ +++ GL+ AI+G+PNV
Sbjct: 176 VHLLALIDFPEDDVEELERKEMLETAKEIVEDIDKLIASSESGMIIREGLKTAIIGKPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA K RAIVT+I GTTRD+IE V V G+P+ L+DTAGIR+TD++VEKIGV
Sbjct: 236 GKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVA 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S+ V AD+I+ + A T ED E+ + + ++ V+NKID P
Sbjct: 296 KSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKN--------IVFVLNKIDL-PKKI 346
Query: 450 NEWNKVGNSFNDHVF--TCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+E ++ N D + V G+Q+LE I +V I N R E L+
Sbjct: 347 DE-KELKNLTKDGIIIEVSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKEALI 405
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+ + + +IE E D TIDL A +G+I+GE +E++++ IF +FC+GK
Sbjct: 406 NAKKYMESVVEAIEREYSEDLITIDLNAALEQIGKITGETATEDLINQIFERFCVGK 462
>gi|313885592|ref|ZP_07819342.1| tRNA modification GTPase TrmE [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619322|gb|EFR30761.1| tRNA modification GTPase TrmE [Eremococcus coleocola
ACS-139-V-Col8]
Length = 459
Score = 312 bits (800), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 186/476 (39%), Positives = 280/476 (58%), Gaps = 27/476 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++G GA+GIVR+SG A+ + ++FK G SH + YG
Sbjct: 6 TIAAISTALG--EGAIGIVRMSGGDALVMANQLFK----------GVNLLTQPSHTIHYG 53
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D ++DEV+ + AP++YTREDVVE+ CHG + ++ +L CL+ GA LA+PG
Sbjct: 54 HIVDPESKQIIDEVMVTLLRAPKTYTREDVVEINCHGGIMAVQAILDLCLQMGARLAEPG 113
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQAE V LI AK+ A A++ +QG S + S+R + L +
Sbjct: 114 EFTKRAFLNGRIDLSQAEAVMDLIEAKTNKAMQASMNQLQGSLSKKIRSLRQTMLNTLAQ 173
Query: 273 IEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
IE +D+ D++ ++L + A+SQ+V++ L+ A +L + G+ IVGRPNVG
Sbjct: 174 IEVTIDYPEYDDVEEMSLQQLKTTAQAISQEVQHILKQAQSGRLFREGINTVIVGRPNVG 233
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLN + ++AIVT+I GTTRD IE V V GVP+ L+DTAGIR+T+++VEKIGVER
Sbjct: 234 KSSLLNRLTGWDKAIVTDIEGTTRDTIEEMVNVRGVPLKLIDTAGIRQTEEVVEKIGVER 293
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S AD++I+ ++ + D ELL Q K+ I+++NK D PS +
Sbjct: 294 SRKALEEADLVILILNQAEDLQEVDLELLKASQGKKR--------IILLNKQDL-PSQLD 344
Query: 451 EWNKVGNSFNDHVF--TCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
N + S T + G+ LE I + Q+ + + +N R + L +
Sbjct: 345 R-NALAESSGTATIIETSMLEEAGLDALEDEISNLFFKGQLQSTDINYLLNSRHTQLLKQ 403
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL ++S++ ELP+D ID A LG+I+G+ + +E+L+ +F +FC+GK
Sbjct: 404 ALAALDEVQSAVAMELPVDLIQIDYTRAWDLLGEITGDSVQDELLNELFSQFCLGK 459
>gi|168334919|ref|ZP_02693039.1| tRNA modification GTPase TrmE [Epulopiscium sp. 'N.t. morphotype
B']
Length = 443
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 187/475 (39%), Positives = 275/475 (57%), Gaps = 36/475 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G G +G++R+SG A+ IV ++F KK SH +
Sbjct: 3 FDTIAAISTPVG--QGGIGVIRVSGSSAISIVNKIFTKNLNNKK-----------SHTIH 49
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG ++ G ++DEVL + M AP+++TRED+VE+ CHG V L RVL L GA LA
Sbjct: 50 YGYIV-SDGLIIDEVLVMLMKAPKTFTREDIVEVNCHGGYVVLNRVLELLLVNGARLATA 108
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DLSQ E + +ISAK+ + A + + G S + + +E++
Sbjct: 109 GEFTKRAFLNGRIDLSQVEAIMDIISAKTNLSLAQATSQLMGNLSKNIKKYQNILLEIIA 168
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IE +D+ DE ++ D I + D++ LETA K+++ G + IVGRPNV
Sbjct: 169 RIEVSIDYPEYDEAELISDGFEED-ITRLIADLKAILETAATGKIIREGAVVTIVGRPNV 227
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA + ++AIVT IAGTTRD++ +V GVP L DTAGIR+T D VE+IGVE
Sbjct: 228 GKSSLLNALLEEDKAIVTNIAGTTRDIVSEHFSVEGVPFILQDTAGIRDTADAVERIGVE 287
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ +D++IM + A + + E+ +L+ +++ + V+NKIDC S
Sbjct: 288 RSKEAIEKSDLVIMLLDATEKISIEEVDLMTMLKNRNT--------LFVVNKIDCVDKYS 339
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
++ D +F A TG+GI +L+ A MK + + G + N RQ L
Sbjct: 340 DD---------DKIFISATTGEGIDELKAA-MKAAVVQNLTMGTAVIS-NIRQKTALSCA 388
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
EAL +++ +I +DF IDL+DA LG I GE++ EE+++ +F +FC+GK
Sbjct: 389 IEALEKVEDAINAGFSVDFLAIDLQDAYSHLGMIIGEEVKEEIINGLFERFCLGK 443
>gi|335048367|ref|ZP_08541387.1| tRNA modification GTPase TrmE [Parvimonas sp. oral taxon 110 str.
F0139]
gi|333758167|gb|EGL35725.1| tRNA modification GTPase TrmE [Parvimonas sp. oral taxon 110 str.
F0139]
Length = 456
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 181/473 (38%), Positives = 279/473 (58%), Gaps = 20/473 (4%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
+TI AI T+ G +GI+RLSG +++IV FKP KK+ ++ +++Y
Sbjct: 3 NTIVAIATATG--ESGIGIIRLSGEKSIEIVKNFFKPYDKKEIDE-------KSNRMMKY 53
Query: 153 GVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
G + D+ ++DEV+ M AP +YTRE+VVE+ HG VCL+RVL CLE GA LA+ G
Sbjct: 54 GHIYDKD-ELIDEVMVCFMFAPHTYTRENVVEIFTHGGIVCLKRVLNLCLENGADLAEKG 112
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGRLDLSQAE V LI AK+ + +A+ ++G S + R + +++L+
Sbjct: 113 EFTKRAFLNGRLDLSQAEGVIDLIKAKTEFSHKSAINQLEGHLSKKIKEFREELLDILSF 172
Query: 273 IEARLDFDDEM-PPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
+E ++F ++M L + V+ K + ++E L +N K+L+ G+ ++I+G+PNVGK
Sbjct: 173 VEYSINFTEDMQEELPFDNVILKTEKLMTEMEELLGESNKGKILKDGINVSIIGKPNVGK 232
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLN + ERAIVT+IAGTTRD+I+ + + G+ + + DTAGIRET D+VEKIGV++S
Sbjct: 233 SSLLNRILRQERAIVTDIAGTTRDLIKEDIELSGIKLNINDTAGIRETVDVVEKIGVQKS 292
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
+ +D+ ++ ED +++N ++T I ++NK+D + E
Sbjct: 293 IEASENSDLNLVLFDISRELDEEDEKIIN--------LANTTKSIGILNKVDLDKKLNEE 344
Query: 452 WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKE 511
K +F + + A+ +GI LE AI+ + +I + N R L + E
Sbjct: 345 KLKEKVNF-ELIEISALKNEGISKLEQAIIDMFFDGKIEIKDKALITNVRHENSLKSSLE 403
Query: 512 ALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + ++ +P+D +DLR A LG+I GE+ISE +L NIF FCIGK
Sbjct: 404 YLKSFYADLKNMVPIDCCEVDLRRAYEVLGEIIGENISENILDNIFSNFCIGK 456
>gi|226315527|ref|YP_002775423.1| tRNA modification GTPase [Brevibacillus brevis NBRC 100599]
gi|226098477|dbj|BAH46919.1| probable tRNA modification GTPase [Brevibacillus brevis NBRC
100599]
Length = 458
Score = 312 bits (799), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 182/475 (38%), Positives = 278/475 (58%), Gaps = 21/475 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAA+ T +G G + ++R+SG A+++V +++K K++ S+ SH +
Sbjct: 3 FDTIAAVATPMG--EGGIAVIRVSGTEAIEVVDKIYKG---KQRLST------VDSHTIH 51
Query: 152 YGVVLDRH-GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG + + + G V+EVL M APR++TREDVVE+ CHG V + +VL L+ GA LA+
Sbjct: 52 YGHLYEPNTGERVEEVLVSVMKAPRTFTREDVVEVNCHGGIVSVEKVLELILDNGARLAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A AL ++G S L+ +R IE +
Sbjct: 112 PGEFTKRAFLNGRVDLSQAEAVIDLIRAKTDRAMKVALNQVEGKLSRLIRQLRQNLIEAM 171
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IE LD+ + ++ N + K + +++ L+TA K+L+ GL AI+GRPNV
Sbjct: 172 AHIEVTLDYPEHDVEEFTQNFLRGKCLEVKGEIQRLLQTAQQGKILREGLSTAIIGRPNV 231
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN+ + E+AIVT++AGTTRDVIE V V GVP+ L+DTAGIR+T+DIVEKIGVE
Sbjct: 232 GKSSLLNSLVQEEKAIVTDVAGTTRDVIEEYVNVRGVPLRLIDTAGIRDTEDIVEKIGVE 291
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S + AD++++ ++ + +++D + +I+++NK D
Sbjct: 292 KSRQLLQKADLVLLVINYNEPLSADDYAIF--------EAAKGFHVIVIVNKFDLPQKVD 343
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
E K + T A GI LE AI +I ++ + N R + L +
Sbjct: 344 LEEIKRHFPQQPLIMTSAREETGIDLLEQAIGEIFFSGRVQQDDLTYVSNARHIQLLRQA 403
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ A+ I+E +P+D ID++ + LG++ GE + E+++ IF +FC+GK
Sbjct: 404 ERAMDEALGGIDELMPVDMIQIDIKKSWELLGEVIGESVGEDLIDQIFSQFCLGK 458
>gi|339448858|ref|ZP_08652414.1| tRNA modification GTPase TrmE [Lactobacillus fructivorans KCTC
3543]
Length = 465
Score = 312 bits (799), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 182/481 (37%), Positives = 281/481 (58%), Gaps = 31/481 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
+ TIAAI T PPG + IVR+SG A+ + ++++ G + S+
Sbjct: 8 YDTIAAIST----PPGEGGISIVRISGSDAMKVAEKIYR----------GKNLAKVASNT 53
Query: 150 VEYGVVLD--RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
+ YG ++D H + VDEV+ M AP++YT+ED++E+ CHG V ++L+ L GA
Sbjct: 54 INYGHIVDPSDHNSEVDEVMVSVMRAPKTYTKEDIIEINCHGGIVATNKILQLVLSNGAR 113
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
+A+PGEFT RAFLNGRLDLSQ+E V LI AK+ + AAL + G S L+ +R +
Sbjct: 114 MAEPGEFTKRAFLNGRLDLSQSEAVMDLIEAKTDESMKAALNQLDGNLSHLIKHLRQDIL 173
Query: 268 ELLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVG 325
++L ++E +D+ D++ + L+MDK + ++ L+TA K+L+ GL AIVG
Sbjct: 174 DVLAQVEVNIDYPEYDDVETMTSKLLMDKSKELKAQIDQLLKTAKQGKVLRDGLNTAIVG 233
Query: 326 RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEK 385
RPNVGKSSLLN ++AIVT++ GTTRDV++ V V GVP+ L+DTAGIR+T+D VEK
Sbjct: 234 RPNVGKSSLLNRLLHEDKAIVTDVPGTTRDVLDEYVNVSGVPLHLVDTAGIRDTEDKVEK 293
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445
IGV+RS AD++++ ++A + T ED ELL+ Q +K+ I+++NK D
Sbjct: 294 IGVDRSRNAIKQADLVLLVLNASEPLTDEDRELLDLTQKSKR--------IILLNKTDLP 345
Query: 446 PSAS-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQC 503
+ NE + ++ N + T A G Q LE I K+ I + V N R
Sbjct: 346 EKINVNELKQRYHAEN-IIKTHATKDNGTQSLEDTIAKMFFNGGIKSSQNDVMVTNARHI 404
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
L + ++L +++ + +P+D ID+ +A LG+I+G+ E+L +F +FC+G
Sbjct: 405 SLLQQASDSLQSVENGLNNGMPVDLVQIDMTNAWDLLGEITGDSYDGELLDQLFSQFCLG 464
Query: 564 K 564
K
Sbjct: 465 K 465
>gi|256848511|ref|ZP_05553953.1| tRNA modification GTPase TrmE [Lactobacillus coleohominis
101-4-CHN]
gi|256714778|gb|EEU29757.1| tRNA modification GTPase TrmE [Lactobacillus coleohominis
101-4-CHN]
Length = 462
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 186/478 (38%), Positives = 275/478 (57%), Gaps = 26/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G G + I+R+SG A+ +V ++FK G + SH +
Sbjct: 6 FDTITAISTPVG--EGGISIIRVSGEEAIPVVKKLFK----------GKDLAKVASHTIN 53
Query: 152 YGVVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N VDEV+ M AP++YT+EDVVE+ CHG + R+L+ + AGA +A+
Sbjct: 54 YGHIIDPQTNQEVDEVMVSVMRAPKTYTKEDVVEINCHGGLLATNRILQLTIGAGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGRLDLSQAE V LI AK+ + AL + G S L+ +R +++L
Sbjct: 114 PGEFTKRAFLNGRLDLSQAEAVMDLIRAKTDKSMKVALNQLDGNLSHLIKHLRKDILDVL 173
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D + + L+ +K + Q +E L+TA K+L+ GL AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDAVEEMTSKLLREKAIEIRQRIEGLLKTAKQGKVLRDGLATAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ ++AIVT +AGTTRDVIE V V VP+ L+DTAGIR TDD VEKIGV
Sbjct: 234 VGKSSLLNSLLHEDKAIVTNVAGTTRDVIEEYVNVNDVPLKLIDTAGIRHTDDTVEKIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD+I++ + + T ED +L+ + ++ P I++ NK D P+
Sbjct: 294 ERSRQAIDTADLILLLIDSSQPLTKEDQQLI--------AQTANKPRIIIFNKSDL-PTK 344
Query: 449 SNEWNKVGNSFNDHVFTCAVTG-QGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCEQL 506
++ D V T ++T +GI +L AI + I + V N R L
Sbjct: 345 VDQDKLQALVDGDKVITASMTKHEGIDELSAAISHLFFNEGIESNQNNVMVTNARHIGLL 404
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ +AL + +++ +P+D ID+ A LG+I+G+ +E+L +F +FC+GK
Sbjct: 405 RQADQALGDVLKGLDDGMPVDLVQIDMTRAWDLLGEITGDSYQDELLDQLFSQFCLGK 462
>gi|403669907|ref|ZP_10935083.1| tRNA modification GTPase trmE [Kurthia sp. JC8E]
Length = 461
Score = 311 bits (798), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 188/478 (39%), Positives = 279/478 (58%), Gaps = 24/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG AV+I +VF SG TSH +
Sbjct: 3 FDTIAAISTPMG--EGAIAIVRLSGDQAVEIADKVFHS-------PSGKKLVEQTSHTIH 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG + + G VV+EV+ M P+++TREDVVE+ CHG V + RVL+ L GA +A+
Sbjct: 54 YGHLKEVDTGEVVEEVMLSLMRGPKTFTREDVVEINCHGGLVTVNRVLQLVLRNGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL + G S L+ S+R +E+L
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMDGKLSRLIKSLRQSILEVL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + + L++ + +++ L T++ K+L+ GL I+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEVTIPLMIKNCSWVEKEITRLLNTSSQGKILREGLSTVILGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + +AIVT++AGTTRD+IE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 234 VGKSSLLNNLVQENKAIVTDVAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD+ ++ ++ + + ED L +Q I+V+NK D
Sbjct: 294 ERSREALRDADLTLLLMNYNEVLSPEDERLFETVQ--------DMNYIVVVNKTDLPQKI 345
Query: 449 SNEWNKVGN-SFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ ++V + HV T ++ +GI+ LE AI + Q+ A + N R L
Sbjct: 346 --DLDRVREIAAGHHVITTSILQDEGIEKLEEAIASLFFSGQVEAEDPTYVSNARHIALL 403
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K+ + + E +P+D +DL + LG+I GE + +E+++ +F +FC+GK
Sbjct: 404 HQAKDRIQDAIQAAEAGIPVDMIQMDLTRSWEILGEIIGETVQDELINQLFSQFCLGK 461
>gi|315640365|ref|ZP_07895480.1| tRNA modification GTPase TrmE [Enterococcus italicus DSM 15952]
gi|315483870|gb|EFU74351.1| tRNA modification GTPase TrmE [Enterococcus italicus DSM 15952]
Length = 465
Score = 311 bits (798), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 192/479 (40%), Positives = 280/479 (58%), Gaps = 27/479 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVRLSG A+ I VF+ K+ SH
Sbjct: 8 FDTIAAIST----PPGEGAISIVRLSGDQAIAIAANVFQAGTKQLAAVP--------SHT 55
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D + +VDEV+ M AP+++TREDVVE+ CHG V + ++L+ L GA L
Sbjct: 56 IHYGHIIDPKTEQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLRQGARL 115
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL + G S+L+ ++R + +E
Sbjct: 116 AEPGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMNLALNQLDGRLSNLIRALRQEILE 175
Query: 269 LLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L ++E +D+ D++ L L+++K H + ++ L+TA K+L+ GL I+GR
Sbjct: 176 TLAQVEVNIDYPEYDDVEALTSQLLVEKAHHVQAQIQALLQTAKQGKILREGLNTTIIGR 235
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN + E+AIVT++AGTTRDVIE V V GVP+ L+DTAGIRET+DIVE+I
Sbjct: 236 PNVGKSSLLNHLLREEKAIVTDVAGTTRDVIEEYVNVRGVPLKLVDTAGIRETEDIVERI 295
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GV+RS AD+I++ ++ + + ED +LL + K+ I+++NK D P
Sbjct: 296 GVQRSRQALAKADLILLVLNQSEPLSEEDRQLLQATDATKR--------IVLLNKTDL-P 346
Query: 447 SASNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
S + + VF +V G+ LE AI + Q + N R
Sbjct: 347 SQLDRSALASLVGDAPVFEVSVLENAGLDKLEQAIADLFFGGQTTDKDASYVSNTRHIAL 406
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L +AL + S IE +P+D ID+ LG+I G+ + +E+++ +F +FC+GK
Sbjct: 407 LEHASQALSDVISGIEAGMPVDLVQIDMTRCWDDLGEIVGDSVQDELITQLFSQFCLGK 465
>gi|398814736|ref|ZP_10573414.1| tRNA modification GTPase TrmE [Brevibacillus sp. BC25]
gi|398035824|gb|EJL29050.1| tRNA modification GTPase TrmE [Brevibacillus sp. BC25]
Length = 458
Score = 311 bits (798), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 182/475 (38%), Positives = 278/475 (58%), Gaps = 21/475 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAA+ T +G G + ++R+SG A+++V +++K K++ S+ SH +
Sbjct: 3 FDTIAAVATPMG--EGGIAVIRVSGTEAIEVVDKIYKG---KQRLST------VDSHTIH 51
Query: 152 YGVVLDRH-GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG + + + G V+EVL M APR++TREDVVE+ CHG V + +VL L+ GA LA+
Sbjct: 52 YGHLYEPNTGERVEEVLVSVMKAPRTFTREDVVEVNCHGGIVSVEKVLELILDNGARLAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A AL ++G S L+ +R IE +
Sbjct: 112 PGEFTKRAFLNGRVDLSQAEAVIDLIRAKTDRAMKVALNQVEGKLSRLIRQLRQNLIEAM 171
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IE LD+ + ++ N + K + +++ L+TA K+L+ GL AI+GRPNV
Sbjct: 172 AHIEVTLDYPEHDVEEFTQNFLRGKCLEVKSEIQRLLQTAQQGKILREGLSTAIIGRPNV 231
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN+ + E+AIVT++AGTTRDVIE V V GVP+ L+DTAGIR+T+DIVEKIGVE
Sbjct: 232 GKSSLLNSLVQEEKAIVTDVAGTTRDVIEEYVNVRGVPLRLIDTAGIRDTEDIVEKIGVE 291
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S + AD++++ ++ + +++D + +I++INK D
Sbjct: 292 KSRQLLQKADLVLLVINYNEPLSADDYAIF--------EAAKGFHVIVIINKFDLPQKVD 343
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
E K + T A GI LE AI +I ++ + N R + L +
Sbjct: 344 LEEIKRHFPQQPLIMTSAREETGIDLLEQAIGEIFFSGRVQQDDLTYVSNARHIQLLRQA 403
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ A+ I++ +P+D ID++ + LG++ GE + E+++ IF +FC+GK
Sbjct: 404 ERAIDEALGGIDDLMPVDMIQIDIKKSWELLGEVIGESVGEDLIDQIFSQFCLGK 458
>gi|333372843|ref|ZP_08464764.1| tRNA modification GTPase TrmE [Desmospora sp. 8437]
gi|332971197|gb|EGK10160.1| tRNA modification GTPase TrmE [Desmospora sp. 8437]
Length = 458
Score = 311 bits (798), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 184/476 (38%), Positives = 281/476 (59%), Gaps = 27/476 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT-SHVVEY 152
TIAAI T +G + ++R+SGP A+ + R+++ G S R SH V Y
Sbjct: 5 TIAAISTPVG--EAGIAVIRVSGPEAIRVADRIYR----------GKKSLRDAESHTVHY 52
Query: 153 GVVLDR-HGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
G +++ GN +DEVL M +PR++TREDVVE+ CHG V ++ VL L AGA LA+P
Sbjct: 53 GTIVNSGQGNPIDEVLVTVMRSPRTFTREDVVEISCHGGMVPVQAVLEEVLSAGARLAEP 112
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DLSQAE V LI +K+ AA A+ +G S L+ +R + +E L
Sbjct: 113 GEFTKRAFLNGRIDLSQAEAVIDLIRSKTDRAARVAMQQAEGRLSGLIQQLRREILETLA 172
Query: 272 EIEARLDFDD-EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+ +D+ + + L +++ K + + + + L+TA K+ + G+ IVGRPNVG
Sbjct: 173 HLAVNVDYPEYDAEQLTEEIMLKKSRGIEERINHLLQTARQGKIYREGIGTVIVGRPNVG 232
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNA ++ +AIVT+I GTTRDVIE V V G+P+ L+DTAGIRET+D+VE+IGVER
Sbjct: 233 KSSLLNALARENKAIVTDIPGTTRDVIEEYVNVRGIPLRLVDTAGIRETEDVVERIGVER 292
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S GAD+I++ ++ + + +D +LL +++ +I+V+NK+D
Sbjct: 293 SHQALEGADLILLLLNHGESLSEDDRKLLKMVRNQ--------TVIVVVNKMDLPRRL-- 342
Query: 451 EWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ +V N + + T + QGI LE AI+ + + A + N R L +
Sbjct: 343 DLQEVRNLIGEAPLITTSMIREQGIDPLEEAIVDLFLGGKAVAADATYVSNARHISLLKQ 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + IE +PLD IDL++A +LG+I G+ ++E+++ IF +FC+GK
Sbjct: 403 AAQQVRDAIEGIEAGVPLDMVEIDLKNAWQSLGEIIGDAVAEDLIDQIFSQFCLGK 458
>gi|406671612|ref|ZP_11078851.1| tRNA modification GTPase TrmE [Facklamia hominis CCUG 36813]
gi|405580862|gb|EKB54921.1| tRNA modification GTPase TrmE [Facklamia hominis CCUG 36813]
Length = 458
Score = 311 bits (797), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 180/481 (37%), Positives = 280/481 (58%), Gaps = 34/481 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T++G GA+GIVR+SGP A++ R+F+ + SH +
Sbjct: 4 LDTIAAISTALG--EGAIGIVRMSGPEAIEYANRLFREKDLNQ----------VASHTIH 51
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG + +++DEV+ + AP++YTRED++E+ CHG V ++ VL ACL GA LAQP
Sbjct: 52 YGHIYREDQSIIDEVMITVLKAPKTYTREDIIEINCHGGLVAVQEVLEACLYQGARLAQP 111
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGRLDLSQAE + LI AK+ + A+++ + G SS + +R + ++ L
Sbjct: 112 GEFTKRAFLNGRLDLSQAEALMDLIQAKTAKSMSASMSQLSGSLSSKIKHLRNEMLQTLA 171
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ L+ + + +++ L A+ +LL+ G++ I+GRPNV
Sbjct: 172 QVEVTIDYPEYDDVEELSNKALCQTALVVKDEIDKLLNEASNGQLLREGVKTVIIGRPNV 231
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT IAGTTRD IE +++ G+P+ L+DTAGIR+T++IVE+IGV
Sbjct: 232 GKSSLLNRLTGREKAIVTNIAGTTRDTIEELISIRGIPLLLIDTAGIRDTNEIVEQIGVN 291
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S + AD+II+ +S D EL++ + K+ I+++NK D S
Sbjct: 292 KSRQMVNEADLIILMFDQSQALSSMDLELIDLTKDKKR--------IVLLNKQDLKSSLD 343
Query: 450 NEWNK---VGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ K VG S + T +T +GI ++E I + I + + +N R L
Sbjct: 344 IDKLKEAIVGTSL---IETSLMTDEGIYEMENQIESLFNKGAIESQDVNYLLNTRHTNLL 400
Query: 507 MRTKEALVRLKSSIEEE---LPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
K+A+ L + IE +P+D ID A LG+I+GE + +E+L +F +FC+G
Sbjct: 401 ---KQAIRSLDAVIEASQMGVPVDLIQIDFTQAWDYLGEITGESVQDELLDKLFSQFCLG 457
Query: 564 K 564
K
Sbjct: 458 K 458
>gi|420148062|ref|ZP_14655335.1| tRNA modification GTPase MnmE [Lactobacillus gasseri CECT 5714]
gi|398400409|gb|EJN53966.1| tRNA modification GTPase MnmE [Lactobacillus gasseri CECT 5714]
Length = 461
Score = 311 bits (797), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 183/476 (38%), Positives = 283/476 (59%), Gaps = 25/476 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T IG G + IVRLSG AV I ++FK G+ + +H +
Sbjct: 8 FDTIAAISTPIG--EGGISIVRLSGEDAVAIANKLFK----------GADLTKVPTHTIH 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + VVDE + + AP+++TRED+VE+ CHG + +L+ L GA +A
Sbjct: 56 YGHIVDPKTQEVVDETMVSVLRAPKTFTREDMVEINCHGGMIVTNDILQLLLANGARMAD 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V ++ AK+ + A+ + GG + ++R + ++ +
Sbjct: 116 PGEFTKRAFMNGRIDLTQAESVMDIVRAKTDKSRQVAMTQLAGGLLEKIKTMRQELLDTM 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
E +D+ + +M L + K +S+ +E L+TA K++++GL AIVGRPNV
Sbjct: 176 AHEEVNIDYPEYDMDDLTSQEMKKKAQEVSKQIEQLLQTAQEGKIIRNGLATAIVGRPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ++ ++AIVT+IAGTTRD +E V+V GVP+ L+DTAGI T+D VEKIGVE
Sbjct: 236 GKSSLLNYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTEDKVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ + A T+ED LL+ + +NKK I+++NK D S
Sbjct: 296 RSKKAIKEADLVLLLLDASQDLTAEDKRLLD-LTANKKR-------IIILNKQDLGTKIS 347
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQD-LETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + N ++ + ++ Q D LE AI K+ + + NQRQ L +
Sbjct: 348 QEM--IKNLTDNPIIVTSILKQKNMDALENAIEKLFFSGIENSQNQILVTNQRQAGLLAK 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K++L + S I + +PLD IDL++A LG+I+GE +E+++ +F +FC+GK
Sbjct: 406 AKQSLEDVISGINDAMPLDLVQIDLKNAWDTLGEITGESAPDELITQLFSQFCLGK 461
>gi|116630435|ref|YP_819588.1| tRNA modification GTPase TrmE [Lactobacillus gasseri ATCC 33323]
gi|238853335|ref|ZP_04643715.1| tRNA modification GTPase TrmE [Lactobacillus gasseri 202-4]
gi|282850777|ref|ZP_06260152.1| tRNA modification GTPase TrmE [Lactobacillus gasseri 224-1]
gi|311111579|ref|ZP_07712976.1| tRNA modification GTPase TrmE [Lactobacillus gasseri MV-22]
gi|122272628|sp|Q040F3.1|MNME_LACGA RecName: Full=tRNA modification GTPase MnmE
gi|116096017|gb|ABJ61169.1| tRNA modification GTPase trmE [Lactobacillus gasseri ATCC 33323]
gi|238834023|gb|EEQ26280.1| tRNA modification GTPase TrmE [Lactobacillus gasseri 202-4]
gi|282558185|gb|EFB63772.1| tRNA modification GTPase TrmE [Lactobacillus gasseri 224-1]
gi|311066733|gb|EFQ47073.1| tRNA modification GTPase TrmE [Lactobacillus gasseri MV-22]
Length = 461
Score = 311 bits (796), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 183/475 (38%), Positives = 283/475 (59%), Gaps = 23/475 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T IG G + IVRLSG AV I ++FK G+ + +H +
Sbjct: 8 FDTIAAISTPIG--EGGISIVRLSGEDAVAIANKLFK----------GADLTKVPTHTIH 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + VVDE + + AP+++TRED+VE+ CHG + +L+ L GA +A
Sbjct: 56 YGHIVDPKTKEVVDETMVSVLRAPKTFTREDMVEINCHGGMIVTNDILQLLLANGARMAD 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V ++ AK+ + A+ + GG + ++R + ++ +
Sbjct: 116 PGEFTKRAFMNGRIDLTQAESVMDIVRAKTDKSRQVAMTQLAGGLLDKIKTMRQELLDTM 175
Query: 271 TEIEARLDFDD-EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
E +D+ + +M L + K +S+ +E L+TA K++++GL AIVGRPNV
Sbjct: 176 AHEEVNIDYPEYDMDDLTSQEMKKKAQEVSKQIEQLLQTAQEGKIIRNGLATAIVGRPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ++ ++AIVT+IAGTTRD +E V+V GVP+ L+DTAGI T+D VEKIGVE
Sbjct: 236 GKSSLLNYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTEDKVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ + A T+ED LL+ + +NKK I+++NK D S
Sbjct: 296 RSKKAIKEADLVLLLLDASQDLTAEDKRLLD-LTANKKR-------IIILNKQDLGTKIS 347
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
E K + N + T + + + LE AI K+ + + NQRQ L +
Sbjct: 348 QEMIK-DITDNPIIVTSILKQKNMDALENAIEKLFFSGIENSQNQILVTNQRQAGLLTKA 406
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K++L + S I++ +PLD IDL++A LG+I+GE +E+++ +F +FC+GK
Sbjct: 407 KQSLEDVISGIDDAMPLDLVQIDLKNAWDTLGEITGESAPDELITQLFSQFCLGK 461
>gi|163791744|ref|ZP_02186131.1| tRNA modification GTPase [Carnobacterium sp. AT7]
gi|159872986|gb|EDP67103.1| tRNA modification GTPase [Carnobacterium sp. AT7]
Length = 462
Score = 311 bits (796), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 187/479 (39%), Positives = 276/479 (57%), Gaps = 27/479 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSW-RPTSH 148
F TIAAI T PPG A+GIVRLSG A++I RV++ SGS + SH
Sbjct: 5 FETIAAIST----PPGEGAIGIVRLSGDQAIEIADRVYR---------SGSKALAEQKSH 51
Query: 149 VVEYGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
+ YG + + N +DEV+ M P+++TREDVVE+ CHG + +VL+ L+ GA
Sbjct: 52 TIHYGHIENPKTNETIDEVMVSVMREPKTFTREDVVEINCHGGITSVNQVLQCVLQNGAR 111
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
LA+PGEFT RAFLNGR+DLSQAE V LI AK+ A AL + G S L+ ++R +
Sbjct: 112 LAEPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMHVALKQLDGNLSHLIRNLRMDIL 171
Query: 268 ELLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVG 325
+ L ++E +D+ D++ + L+++K + ++ L TA+ K+L+ GL AI+G
Sbjct: 172 DTLAQVEVNIDYPEYDDVEEMTSKLLIEKAKLVKASIQQLLATASQGKILREGLATAIIG 231
Query: 326 RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEK 385
RPNVGKSSLLN E+AIVT+IAGTTRDVIE ++V GVP+ L+DTAGIRET+DI+E+
Sbjct: 232 RPNVGKSSLLNYLLDEEKAIVTDIAGTTRDVIEEYISVRGVPLKLIDTAGIRETEDIIER 291
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445
IGVERS AD++++ + + T ED L+ +++ I+++NK+D
Sbjct: 292 IGVERSRQALSDADLVLLVFNQSEPLTIEDKALIEATNQHRR--------IVILNKMDLP 343
Query: 446 PSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+ V T ++ GI LE I + Q + N R
Sbjct: 344 NKLDLAELETLVEPESIVKTSILSKSGIDVLEKNIANLFFTGQTGERDATYVSNVRHIAL 403
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L +EAL + S +E +P+D ID+ LG+I+G+ + +E+L+ +F +FC+GK
Sbjct: 404 LNDAEEALDEVISGVEMGMPVDLIQIDMTRCWDLLGEITGDSVQDELLTQLFSQFCLGK 462
>gi|317131002|ref|YP_004097284.1| tRNA modification GTPase TrmE [Bacillus cellulosilyticus DSM 2522]
gi|315475950|gb|ADU32553.1| tRNA modification GTPase TrmE [Bacillus cellulosilyticus DSM 2522]
Length = 458
Score = 311 bits (796), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 180/475 (37%), Positives = 273/475 (57%), Gaps = 21/475 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T +G GA+ IVR+SG AV+I +++ K K+ +H +
Sbjct: 3 MDTIAAISTPMG--EGAIAIVRISGDEAVNIADLIYQGKKSLKE---------VETHTIN 51
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N ++EV+ +LAP+++T+E+++E+ CHG + + R+L+ + GA LA+
Sbjct: 52 YGYIVDPETNDKIEEVMVSVLLAPKTFTKENIIEINCHGGIISVNRILQLIISHGARLAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A++ ++G S + R +E +
Sbjct: 112 PGEFTKRAFLNGRIDLSQAEGVIDLIRAKTDRAMNVAMSQLEGKLSKRIQKSRQDLLETV 171
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+E +D+ + + + L L+ +K H + D+EN L+TA K+L+ GL I+GRPNV
Sbjct: 172 AHVEVNIDYPEYDAEEMTLALLKEKAHDVKADIENLLQTAQQGKILRDGLSTVIIGRPNV 231
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN +AIVTEIAGTTRDVIE V V GVP+ LLDTAGIRETDD+VEKIGVE
Sbjct: 232 GKSSLLNNLVHDNKAIVTEIAGTTRDVIEEYVNVRGVPLRLLDTAGIRETDDVVEKIGVE 291
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS V A+++++ ++ + T D EL + + ++ I++INK D +
Sbjct: 292 RSRKVVGDAELVLLVLNYNEELTESDEELFHISKGKER--------IIIINKTDLERKIN 343
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
E K + V T + +G+ +LE AI + I + N R L
Sbjct: 344 MERVKQLANEAPIVSTSLIKDEGVDELEEAIKVLFFQGDIETTDLTYVSNTRHITLLQEA 403
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++ +I+ LP+D ID+ LG++ GE + E ++ +F +FC+GK
Sbjct: 404 LRSVSEALEAIDAGLPIDMIQIDITKTWELLGEVIGESVHESLIDQLFSQFCLGK 458
>gi|297585588|ref|YP_003701368.1| tRNA modification GTPase TrmE [Bacillus selenitireducens MLS10]
gi|297144045|gb|ADI00803.1| tRNA modification GTPase TrmE [Bacillus selenitireducens MLS10]
Length = 458
Score = 311 bits (796), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 178/480 (37%), Positives = 280/480 (58%), Gaps = 31/480 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFK---PVKKKKKKSSGSGSWRPTSH 148
TI+AI T +G GA+GIVR+SGP AV++ R++K P+++ SH
Sbjct: 3 MDTISAISTPMG--EGAIGIVRISGPKAVELADRLYKGAVPLQE------------VASH 48
Query: 149 VVEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
+ YG +++ G +++EV+ + AP++YT+ED++E+ CHG + RVL+ L GA
Sbjct: 49 TINYGHLINPEDGQIIEEVMVSVLRAPKTYTKEDMIEVNCHGGLTSVNRVLQLILNEGAR 108
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
LA+PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S+ + ++R +
Sbjct: 109 LAEPGEFTKRAFLNGRIDLSQAEAVMDLIQAKTDRAMNVAMKQVEGKLSNRIQTLRQALL 168
Query: 268 ELLTEIEARLDFDD-EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
E + +E +D+ + + + L+L+ +K + Q+++ L TA K+L+ GL IVGR
Sbjct: 169 ETVASVEVNIDYPEYDAEEVTLDLLREKSTYVKQEIDRLLTTAEQGKILREGLSTVIVGR 228
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN+ +AIVTEI GTTRDVIE V + GVP+ LLDTAGIRET+D+VE++
Sbjct: 229 PNVGKSSLLNSLVHENKAIVTEIPGTTRDVIEEYVNIRGVPLKLLDTAGIRETEDVVERL 288
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS V + A++I+ V+ + T D EL ++ I+++NK D
Sbjct: 289 GVERSRQVMIDAELILFVVNYNEPLTDSDRELFELVKDQDT--------IVIVNKRDL-- 338
Query: 447 SASNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCE 504
+ +V H V T + +G+ +LE AI + + +G + N R
Sbjct: 339 DGQIDMKEVNQLAGQHPVVTTSLLKDEGVDELEEAIRDLFFEGDLDSGDLSYVSNSRHIA 398
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + K ++ ++E +P+D ID+ A LG++ G+ + E ++ +F +FC+GK
Sbjct: 399 LLNQAKRSIDEALMAVETGMPVDMVQIDITKAWELLGEVIGDSVHESLIDQLFSQFCLGK 458
>gi|229917461|ref|YP_002886107.1| tRNA modification GTPase TrmE [Exiguobacterium sp. AT1b]
gi|229468890|gb|ACQ70662.1| tRNA modification GTPase TrmE [Exiguobacterium sp. AT1b]
Length = 459
Score = 311 bits (796), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 191/477 (40%), Positives = 274/477 (57%), Gaps = 25/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG +AV+ V VF SG SH +
Sbjct: 4 FDTITAISTPMG--EGAIGIVRLSGDLAVETVNNVF----------SGKDLTTVDSHTIH 51
Query: 152 YGVV-LDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEA-GATLA 209
YG + G +VDEV+ M AP+++TREDVVE+ CHG V + RVL L+ LA
Sbjct: 52 YGTLKYPDTGEIVDEVMVSIMRAPKTFTREDVVEINCHGGVVAVNRVLELILDQPDIRLA 111
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+A ++G S LV +R + +E
Sbjct: 112 EPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAMAQMEGRLSRLVRELRQQLLET 171
Query: 270 LTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+ +E +D+ + + + +V +K + + +E LETA K+L+ GL AI+GRPN
Sbjct: 172 IAAVEVNIDYPEYDAEEMTQAIVEEKAGEVKRVLEQLLETARQGKILREGLATAIIGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSL+N + +AIVTEIAGTTRD IE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 232 VGKSSLMNTLVQETKAIVTEIAGTTRDTIEEYVNVKGVPLKLIDTAGIRETEDIVERIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
E+S AD++++ ++ +G T ED L ++ I++INK D +
Sbjct: 292 EKSRKALEAADLVLLVLNGHEGLTVEDEALFEAVKGMNA--------IIIINKTDLPQNM 343
Query: 449 -SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
S++ K+ + V T + +GI LE AI + + + + N R + +
Sbjct: 344 DSSKLEKLA-AGRPIVATSLLLDEGIDALEAAIANLFFAKGVESQDMTYISNARHIQLIK 402
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
RT + S +P+D IDLR A LG+I+G+ + E ++ +F +FC+GK
Sbjct: 403 RTIGQIDEALGSAVMNMPIDMVQIDLRRAWDTLGEINGDTVQESLIDQLFSQFCLGK 459
>gi|27262204|gb|AAN87383.1| thiopene and furan oxidation protein ThdF [Heliobacillus mobilis]
Length = 472
Score = 310 bits (795), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 189/485 (38%), Positives = 280/485 (57%), Gaps = 33/485 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAA+ T+IG G +GIVR+SGP A +++ +VF P + S SW TSH + G
Sbjct: 7 TIAAVATAIG--EGGIGIVRVSGPDAKEVIQKVFLP-----RYGSSVDSW--TSHTLHLG 57
Query: 154 -VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
VV G+V+DEVL M P S+T EDVVE CHG V +R L A L AG LA+PG
Sbjct: 58 HVVHPDDGHVIDEVLCAWMAGPHSFTTEDVVEFHCHGGSVPVRETLNAVLRAGVRLAEPG 117
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EF RAFL GRLDL+QAE + +I +K+ AA++ ++G S ++ VR + + +L
Sbjct: 118 EFARRAFLGGRLDLAQAEAIIGIIRSKTRDGLGAAVSQLEGQLSRRISKVRNEILAVLAH 177
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
+EA +DF ++++P + + + A+ +++ L + ++LQ G + I GRPNVGK
Sbjct: 178 LEALIDFPEEDLPDITPERLSKDVQAIFMEIQRLLNRSQTGRVLQEGWRTVIAGRPNVGK 237
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLNA +RAIVT+I GTTRD IE + + G+P+ L+DTAGIRET+D+VEKIGVE++
Sbjct: 238 SSLLNALLDEQRAIVTDIPGTTRDAIEEFIEIGGIPLRLVDTAGIRETEDLVEKIGVEKT 297
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
AD+++ + D +++D ELL +Q P ++++NK D A +E
Sbjct: 298 REYMEKADLVLYVLDGSDELSNDDEELLRSLQER--------PSVVLVNKSDLAIRRLDE 349
Query: 452 WN---KVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQI--------PAGGRRWAVNQ 500
+G+ ++ A G G+++L I ++V + P R + Q
Sbjct: 350 QQLRAVIGDKLI--IYMSAKEGWGLEELAVQIRRLVYKDEAGNSLSIMDPTESRLDLITQ 407
Query: 501 -RQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGK 559
R E L R + + ++S +E L DF TIDL+ A ALG+I GE + E++L IF
Sbjct: 408 ARHREALERAQSHIRSVQSGLEMALSPDFLTIDLKAAWEALGEIIGETVGEDILDKIFSS 467
Query: 560 FCIGK 564
FCIGK
Sbjct: 468 FCIGK 472
>gi|410458111|ref|ZP_11311874.1| tRNA modification GTPase TrmE [Bacillus azotoformans LMG 9581]
gi|409931739|gb|EKN68715.1| tRNA modification GTPase TrmE [Bacillus azotoformans LMG 9581]
Length = 458
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 184/477 (38%), Positives = 275/477 (57%), Gaps = 25/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T +G GA+ IVR+SGP AV ++FK G + SH +
Sbjct: 3 MDTIAAISTPMG--EGAIAIVRISGPEAVKAANQIFK----------GKNIEKVESHTIH 50
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V+EV+ + AP+++TRED+VE+ CHG V + RVL+ L G LA+
Sbjct: 51 YGFIVDPEVNEKVEEVMLSVLRAPKTFTREDIVEINCHGGLVSVNRVLQLVLNQGVRLAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + A+ ++G S LV +R +E L
Sbjct: 111 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVAIGQMEGRLSKLVRQLRQTILETL 170
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+E +D+ D++ + L+++K + ++ LET+ K+L+ G+ I+GRPN
Sbjct: 171 AHVEVNIDYPEYDDVEEMTHRLLLEKATEIKAEIAKLLETSKQGKILRDGISTVIIGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 231 VGKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ + T+ED +L +I+++NK D
Sbjct: 291 ERSRQVLKEADLILLVLNNAEPLTAEDKKLF--------EAARGMDVIVLVNKTDLNRKI 342
Query: 449 S-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+E K+ +++ + T GI LE AI + +I +G + N R L
Sbjct: 343 DMDEVKKLADNY-PVISTSLKEESGIDQLEEAISGLFFTGRIESGDMTYVSNTRHIALLN 401
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++A+ + S I+ +P+D ID LG+I G+ + E +++ +F +FC+GK
Sbjct: 402 QAQKAIDDVLSGIDAGVPIDLIQIDFTRTWEILGEIIGDTVHESLINQLFSQFCLGK 458
>gi|418036030|ref|ZP_12674465.1| hypothetical protein LDBUL1519_01165 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|354688880|gb|EHE88902.1| hypothetical protein LDBUL1519_01165 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
Length = 461
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 184/477 (38%), Positives = 283/477 (59%), Gaps = 27/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G G + IVR+SG AV IV R+FK G + SH +
Sbjct: 8 FDTIAAISTPLG--EGGISIVRVSGEDAVAIVNRLFK----------GKDLEKVPSHTIN 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+A MLAP+++T+ED+VE+ CHG V +L+ L GA +A
Sbjct: 56 YGHIVDPATGQVIDEVMASVMLAPKTFTKEDIVEINCHGGIVVTNDILQLLLANGARMAD 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V +I AK+ A A+ + GG + + ++R + +++L
Sbjct: 116 PGEFTKRAFVNGRIDLTQAESVMDIIRAKTDKARQVAVKQLSGGLLTEIRALRQEILDVL 175
Query: 271 TEIEARLDF---DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
+E +D+ D+E + ++ A+S ++ LETA ++L++GL+ AIVGRP
Sbjct: 176 ANVEVNIDYPEYDEE--EVTAQKLLACAEAVSGKIDRLLETAQEGQILRNGLKTAIVGRP 233
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN ++S++AIVT++AGTTRD +E V+V GVP+ L+DTAGI T+D VEKIG
Sbjct: 234 NVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAGIHHTEDQVEKIG 293
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS+ AD+I++ + T ED +LL K+ I+V+NK D
Sbjct: 294 VERSKKAIAQADLILLLLDGSQELTEEDRQLLELTAGKKR--------IIVLNKTDLGQK 345
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ E S ++ + T + + + +LE I K+ + + NQRQ L
Sbjct: 346 LT-EAEIAKESGSEVISTSIMMKENLDELEALIKKLFFKGIENSNDQVLVTNQRQAGLLA 404
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K+ L + S +E +P+D ID A +LG+I+G+ +E+++++F +FC+GK
Sbjct: 405 KAKQQLADVASGLEAGMPVDLVQIDFTGAWESLGEITGDSAPDELINDLFSQFCLGK 461
>gi|297618522|ref|YP_003703681.1| tRNA modification GTPase TrmE [Syntrophothermus lipocalidus DSM
12680]
gi|297146359|gb|ADI03116.1| tRNA modification GTPase TrmE [Syntrophothermus lipocalidus DSM
12680]
Length = 460
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 188/479 (39%), Positives = 276/479 (57%), Gaps = 29/479 (6%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
TIAAI T +G G + IVR+SG AVDIV +VF+PV K+ G + +
Sbjct: 4 DTIAAIATPLG--EGGIAIVRVSGREAVDIVEKVFRPVPGGKRLKDRGG------YTLGL 55
Query: 153 GVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
G ++DR GN VDEVL M P+SYT EDVVE+ CHG + R L LE GA LA+PG
Sbjct: 56 GWIVDRKGNHVDEVLVTVMRGPKSYTAEDVVEINCHGGVLAAIRCLETVLENGARLAEPG 115
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGRLD+SQAE V +I AK+ A+ ++G V + + + L T
Sbjct: 116 EFTKRAFLNGRLDISQAEAVIDIIRAKTEKGMSMAVKQLEGMLRKRVAELEDRLVGLNTM 175
Query: 273 IEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
+EA +DF +E+ L+ + + + +++E L +++ Q G+++ I G+PNVGKS
Sbjct: 176 VEASIDFPEEVGDLDEEIARQQAQEILRELEGLLRAGERNRVYQWGVKVVIAGKPNVGKS 235
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNA + ++AIVT+I GTTRD++E + V G+PV ++DTAGIRET D+VE+IGVERSE
Sbjct: 236 SLLNALLRKKKAIVTDIPGTTRDIVEDYINVKGIPVNIMDTAGIRETGDLVERIGVERSE 295
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
V AD+I+ + A G + ED + + + +I+++NK D E
Sbjct: 296 EVISEADIILAVLDAGAGISEEDERVAKMVAGRR--------VIVLVNKEDL------EE 341
Query: 453 NKVGNSFNDHVF--TCAVTGQ-----GIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+V + +F V G G+++LE+AI + V ++ AG VN RQ E
Sbjct: 342 KRVTLEEVERLFPGQTVVRGSVKEEIGLEELESAIEEAVLAGKVEAGDEDIMVNLRQEEA 401
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
R K ++ + +E LD +D+ +A ALG+I+G+ + E+V+ IF +CIGK
Sbjct: 402 FRRVKTSMEGFLAGLETNTSLDCLAVDIGEALEALGEITGKTLKEDVIERIFRDYCIGK 460
>gi|297545652|ref|YP_003677954.1| tRNA modification GTPase TrmE [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296843427|gb|ADH61943.1| tRNA modification GTPase TrmE [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 462
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 187/477 (39%), Positives = 283/477 (59%), Gaps = 23/477 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T G +GIVR+SG A++I+ ++FKP K K K + SH +
Sbjct: 5 FDTIAAISTFPG--EAGIGIVRISGDDALEIISKIFKPYKAKDIK-------KVKSHTLH 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + DEVL M P +YTRED+VE+ CHG V ++L L+ GA LA+
Sbjct: 56 YGHIVDPETQEIYDEVLVSIMKKPNTYTREDIVEINCHGGIVITSKILELVLKQGARLAE 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I+AK++ A A + G S + ++ K + LL
Sbjct: 116 PGEFTKRAFLNGRIDLSQAEAVIDIITAKTMLANKYAQKQLAGYVGSRIKEMKDKIMGLL 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+ A +DF ++++ L +++ + +D++ + ++ ++++ GL+ AI+G+PNV
Sbjct: 176 VHLLALIDFPEEDVEELERKEMLETAKEIVEDIDKLIVSSESGRIIREGLKTAIIGKPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA K RAIVT+I GTTRD+IE + V G+P+ L+DTAGIR+TD++VEKIGVE
Sbjct: 236 GKSSLLNALLKENRAIVTDIPGTTRDIIEEYINVKGIPIKLIDTAGIRDTDELVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ V AD+I+ + A + ED ++ + + TE + +I V+NKID P
Sbjct: 296 RSKEVLAEADLILFVLDASRELSEEDYQIFDIL------TEKN--IIFVLNKIDL-PKKI 346
Query: 450 NEWNKVGNSFNDHVFTCAVTGQ--GIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+E +K+ + D + T + G++ LE AI +V I +N R E L+
Sbjct: 347 DE-SKLKSLIKDGIIIEVSTVERIGLEKLENAIYDLVFRGDINLREEEIIINSRHKEALI 405
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+ + +IE D TIDL A LG+I+GE +E++++ IF +FC+GK
Sbjct: 406 NAKKYMESCVKAIEMGYSEDLITIDLNAALDQLGKITGETATEDLINEIFERFCVGK 462
>gi|116334862|ref|YP_796389.1| tRNA modification GTPase TrmE [Lactobacillus brevis ATCC 367]
gi|122268459|sp|Q03N64.1|MNME_LACBA RecName: Full=tRNA modification GTPase MnmE
gi|116100209|gb|ABJ65358.1| tRNA modification GTPase, TrmE [Lactobacillus brevis ATCC 367]
Length = 464
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 183/479 (38%), Positives = 273/479 (56%), Gaps = 28/479 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG + I+RLSG + ++FK G+ + SH
Sbjct: 8 FDTIAAIST----PPGEGGISIIRLSGEEVFQVAAKLFK----------GADLTQVGSHT 53
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG +LD G+ VDEV+ M AP++YT+ED++E+ CHG V R+L+ CL GA L
Sbjct: 54 IHYGHILDPETGDEVDEVMVTVMRAPKTYTKEDIIEINCHGGIVATNRILQLCLSYGARL 113
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGE+T RAFLNGR+DL+QAE+V LI AK+ + AL + G S L+ ++R ++
Sbjct: 114 AEPGEYTKRAFLNGRIDLTQAESVMDLIRAKTDKSMKVALDQLDGDLSKLIRNLRQDILD 173
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L ++E +D+ D++ + ++++K H + Q ++ L TA K+L+ GL AIVGR
Sbjct: 174 ALAQVEVNIDYPEYDDVETMTTKMLLEKAHEVKQQIKTLLATAKQGKVLREGLATAIVGR 233
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN ++AIVT++AGTTRDVIE V V GVP+ L+DTAGIR+T D VEKI
Sbjct: 234 PNVGKSSLLNHLLHEDKAIVTDVAGTTRDVIEEYVNVKGVPLKLIDTAGIRDTTDKVEKI 293
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS AD++++ ++A + T+ED LL + ++ IL++NK D
Sbjct: 294 GVERSRKAINTADLVMLVLNASEPLTAEDEALLTATKDTQR--------ILILNKTDLPL 345
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCEQ 505
+ + + T + G+ LE I + I + V N R
Sbjct: 346 QLDLAAVRQVAGDSPIIETSILQSTGMDQLEETIAHLFFDEGIESSQNTVMVTNARHIGL 405
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + AL +++ I +P+D ID+ A LG+I+G+ +E+L +F +FC+GK
Sbjct: 406 LHQASAALDDVQNGIAAGMPVDLVQIDMTRAWDLLGEITGDSYQDELLDQLFSQFCLGK 464
>gi|366086845|ref|ZP_09453330.1| tRNA modification GTPase TrmE [Lactobacillus zeae KCTC 3804]
Length = 462
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 184/477 (38%), Positives = 276/477 (57%), Gaps = 26/477 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
+ TIAAI T PPG A+ IVRLSG AV +VFK G + SH
Sbjct: 8 YDTIAAIST----PPGEGAISIVRLSGETAVTTANKVFK----------GKDLTKVKSHT 53
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D G+++DEV+ MLAP+++TREDVVE+ CHG V R+L+ L GA +
Sbjct: 54 IHYGHIVDPESGDLIDEVMVSVMLAPKTFTREDVVEINCHGGIVATNRILQLLLGEGARM 113
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DL++AE+V LI AK+ A A+ + G +L+ +R + +E
Sbjct: 114 AEPGEFTKRAFLNGRIDLTEAESVMDLIRAKTDRAMQVAVNQLDGNLHTLIKRLRQEILE 173
Query: 269 LLTEIEARLDFDD-EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
+L ++E +D+ + + + ++++K + + +E L TA+ K+L+ GL AIVGRP
Sbjct: 174 VLAQVEVNIDYPEYDTDEMTTKMLLEKAQTVKKAIEQLLTTASQGKVLREGLATAIVGRP 233
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN ++AIVT++AGTTRDV+E V V GVP+ L+DTAGI +T D VEKIG
Sbjct: 234 NVGKSSLLNHMLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTDKVEKIG 293
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD+I++ + T+ED EL+ K+ I+V+NK D
Sbjct: 294 VERSRQAITQADLILLVLDQSQPLTAEDRELVAATADKKR--------IIVLNKQDLPKQ 345
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ N+ + T T G+ +L+ I K+ + G N RQ L
Sbjct: 346 LDTDALYKLVKPNEVIKTAIPTSDGMDELDERIAKLFFGGIENSQGTVMVSNARQIGLLR 405
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++L + + I+ +P+D ID+ A LG+I+GE +E+++ +F +FC+GK
Sbjct: 406 QASKSLDAVIAGIDAGMPIDLVQIDMTAAWDKLGEITGESAPDELITQLFSQFCLGK 462
>gi|289579530|ref|YP_003478157.1| tRNA modification GTPase TrmE [Thermoanaerobacter italicus Ab9]
gi|289529243|gb|ADD03595.1| tRNA modification GTPase TrmE [Thermoanaerobacter italicus Ab9]
Length = 460
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 187/477 (39%), Positives = 283/477 (59%), Gaps = 23/477 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T G +GIVR+SG A++I+ ++FKP K K K + SH +
Sbjct: 3 FDTIAAISTFPG--EAGIGIVRISGDDALEIISKIFKPYKAKDIK-------KVKSHTLH 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + DEVL M P +YTRED+VE+ CHG V ++L L+ GA LA+
Sbjct: 54 YGHIVDPETQEIYDEVLVSIMKKPNTYTREDIVEINCHGGIVITSKILELVLKQGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I+AK++ A A + G S + ++ K + LL
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVIDIITAKTMLANKYAQKQLAGYVGSRIKEMKDKIMGLL 173
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+ A +DF ++++ L +++ + +D++ + ++ ++++ GL+ AI+G+PNV
Sbjct: 174 VHLLALIDFPEEDVEELERKEMLETAKEIVEDIDKLIVSSESGRIIREGLKTAIIGKPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA K RAIVT+I GTTRD+IE + V G+P+ L+DTAGIR+TD++VEKIGVE
Sbjct: 234 GKSSLLNALLKENRAIVTDIPGTTRDIIEEYINVKGIPIKLIDTAGIRDTDELVEKIGVE 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ V AD+I+ + A + ED ++ + + TE + +I V+NKID P
Sbjct: 294 RSKEVLAEADLILFVLDASRELSEEDYQIFDIL------TEKN--IIFVLNKIDL-PKKI 344
Query: 450 NEWNKVGNSFNDHVFTCAVTGQ--GIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+E +K+ + D + T + G++ LE AI +V I +N R E L+
Sbjct: 345 DE-SKLKSLIKDGIIIEVSTVERIGLEKLENAIYDLVFRGDINLREEEIIINSRHKEALI 403
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+ + +IE D TIDL A LG+I+GE +E++++ IF +FC+GK
Sbjct: 404 NAKKYMESCVKAIEMGYSEDLITIDLNAALDQLGKITGETATEDLINEIFERFCVGK 460
>gi|329769256|ref|ZP_08260673.1| tRNA modification GTPase TrmE [Gemella sanguinis M325]
gi|328839250|gb|EGF88833.1| tRNA modification GTPase TrmE [Gemella sanguinis M325]
Length = 460
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 185/476 (38%), Positives = 286/476 (60%), Gaps = 24/476 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI AI T++G GA+GIVRLSG A I ++ + K K +S PT H + YG
Sbjct: 4 TICAISTALG--EGAIGIVRLSGDEAFSIADKIVRLPKGKTVES------LPT-HTINYG 54
Query: 154 VVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
V+D N ++E++ V M+ PR+YT EDVVE+ CHG + +++VL CLE GA +A+PG
Sbjct: 55 NVIDPATNEKIEEIMLVKMVGPRTYTTEDVVEINCHGGIITIQKVLALCLEHGARMAEPG 114
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DL+QAE V I +K+ A+ A +QG S+L+ +RA+ +++LT
Sbjct: 115 EFTKRAFLNGRIDLTQAEAVIDFIKSKTDEASQIANNQMQGRLSTLIKRLRAEILDILTV 174
Query: 273 IEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+E +D+ D++ +++K ++ + +E+ LET+ K+++ G+ AI+GRPNVG
Sbjct: 175 VEVNIDYPEYDDLEIETTKTILEKSTSIKRSLEDLLETSKQGKIIKEGINTAIIGRPNVG 234
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLN + +AIVT+IAGTTRDV+E V + GVP+ L+DTAGIRETDDIVE+IGV+R
Sbjct: 235 KSSLLNNLLQENKAIVTDIAGTTRDVLEEYVNIKGVPIKLIDTAGIRETDDIVEQIGVQR 294
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S+ AD+++ +++ + T +D ELL K T+ T I+++NK+D
Sbjct: 295 SKDALEKADLVLFLLNSSEELTEDDKELL-------KLTKGKTT-IVILNKLDLETKI-- 344
Query: 451 EWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ +V ++H + T T +GI +LE I + + N RQ + R
Sbjct: 345 DLEEVEKLAHNHPIIKTSMTTYKGIDELEKNIRDLFFGGAARPKDATYLSNTRQINLIQR 404
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+L + E L +D ID +A LG++ GE+ +E+++ +F +FC+GK
Sbjct: 405 ALASLNEAIGAAELGLEVDMVLIDYTNAFNLLGEVIGENSGDELINELFSRFCLGK 460
>gi|403068959|ref|ZP_10910291.1| tRNA modification GTPase TrmE [Oceanobacillus sp. Ndiop]
Length = 458
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 188/483 (38%), Positives = 267/483 (55%), Gaps = 39/483 (8%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
TI AI T IG GA+ IVRLSGP A+ I +FK G SH + Y
Sbjct: 4 DTITAISTPIG--EGAIAIVRLSGPEAISITAGIFK----------GKDLINVDSHTIHY 51
Query: 153 GVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
G +L+ N + +EV+ M AP+++TREDVVE+ CHG V + RVL L GA LA+P
Sbjct: 52 GKILEPQTNEIAEEVMVSVMRAPKTFTREDVVEINCHGGMVAVNRVLEIILAKGARLAEP 111
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFL+GR+DLSQAE V LI AK+ A AL + G S L+ +R +E +
Sbjct: 112 GEFTKRAFLHGRIDLSQAEAVMDLIRAKTDKAMSVALKQMDGRLSGLIQKLRQDLLETVA 171
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+E +D+ D++ ++ +++ K + +E+ L A K+L+ GL AI+GRPNV
Sbjct: 172 HVEVNIDYPEYDDVEEMSNDMMRTKTKEVHAAIEDLLGVAKQGKILREGLATAIIGRPNV 231
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSL+N + +AIVTEI GTTRD+IE V V GVP+ L+DTAGIRET+DIVE+IGVE
Sbjct: 232 GKSSLMNTLVQENKAIVTEIPGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVE 291
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINK-------- 441
RS V +D+I+ ++ D T ED +L ++ I++INK
Sbjct: 292 RSRKVLKESDLILFVLNFNDELTEEDRKLFEAVR--------GLEYIVIINKTDLEQRLD 343
Query: 442 IDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQR 501
+D + +W V S + +G+ +LE AI +I G + N R
Sbjct: 344 MDTVKEFAGDWPIVSTSL--------IEEEGVDELEKAIADTFFAGEIDTGDMTYVSNIR 395
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
+ L + K+AL IE +PLD ID+ LG+I G+ S+ ++ +F +FC
Sbjct: 396 HIQLLKQAKQALEDAMEGIELGMPLDIVQIDVTRTWEFLGEIIGDTASDSLIDQLFSQFC 455
Query: 562 IGK 564
+GK
Sbjct: 456 LGK 458
>gi|420145130|ref|ZP_14652605.1| tRNA modification GTPase MnmE [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398403279|gb|EJN56537.1| tRNA modification GTPase MnmE [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 463
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 185/478 (38%), Positives = 276/478 (57%), Gaps = 27/478 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVRLSG A+ I ++FK G + SH
Sbjct: 8 FDTIAAIST----PPGEGAISIVRLSGEEALPIAEKIFK----------GRDLQKVASHT 53
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D +G V+DEV+ + AP++YTRE++VE+ HG V VL+ L GA L
Sbjct: 54 INYGHIVDPENGEVIDEVMVSVLRAPKTYTREEMVEINTHGGIVATNHVLQLLLSHGARL 113
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DL+QAE+V LI AK+ A A+ + G S L+ ++R + ++
Sbjct: 114 AEPGEFTKRAFLNGRIDLTQAESVMDLIRAKTDRAMQVAVNQLDGNLSRLIKNIRQEILD 173
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L ++E +D+ D + + ++++K + + +E L TA+ K+L+ GL AIVGR
Sbjct: 174 ALAQVEVNIDYPEYDAVETMTTKMLLEKATMVKKQIEQLLATASQGKVLREGLATAIVGR 233
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN ++AIVT++AGTTRDVIE V V VP+ L+DTAGIRETDD VEKI
Sbjct: 234 PNVGKSSLLNYLLHEDKAIVTDVAGTTRDVIEEYVNVRDVPLKLIDTAGIRETDDKVEKI 293
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS+ AD++++ ++ + T ED LL Q K+ ++++NK D
Sbjct: 294 GVERSKQAITQADLVLLILNNSEALTDEDRTLLAATQDKKR--------LVILNKTDLPV 345
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ + + + A+T G+ LE I + + N RQ L
Sbjct: 346 KLDEAELQQTVAPENIIAISALTATGVDQLEQRIADLFWGGIDNSQSTTLVSNARQIGLL 405
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K+AL + + I+ E+P+D ID+ LG+I+G+ +E+L+ +F +FC+GK
Sbjct: 406 NQAKQALDDVLAGIKAEMPVDLVQIDMTRCWDLLGEITGDAYQDELLNQLFSQFCLGK 463
>gi|268320269|ref|YP_003293925.1| tRNA modification GTPase TrmE [Lactobacillus johnsonii FI9785]
gi|262398644|emb|CAX67658.1| tRNA modification GTPase TrmE [Lactobacillus johnsonii FI9785]
Length = 461
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 182/476 (38%), Positives = 284/476 (59%), Gaps = 25/476 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T IG G + IVRLSG AV I ++FK G+ + SH +
Sbjct: 8 FDTIAAISTPIG--EGGISIVRLSGEDAVAIANKLFK----------GADLTKVPSHTIH 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + +VVDE + + AP+++TRED+VE+ CHG + +L+ L GA +A
Sbjct: 56 YGHIVDPKTKDVVDETMVSVLRAPKTFTREDMVEINCHGGMIVTNDILQLLLANGARMAD 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V ++ AK+ + A+ + GG + ++R + ++ +
Sbjct: 116 PGEFTKRAFMNGRIDLTQAESVMDIVRAKTDKSRQVAMTQLAGGLLDKIRTMRQELLDTM 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
E +D+ + +M L + K +S+ ++ L+TA K++++GL AIVGRPNV
Sbjct: 176 AHEEVNIDYPEYDMDDLTSQEMKKKAEEVSKQIDQLLKTAQEGKIIRNGLATAIVGRPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ++ ++AIVT+IAGTTRD +E V+V GVP+ L+DTAGI T+D VEKIGVE
Sbjct: 236 GKSSLLNYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTEDKVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ + A T ED LLN + +NKK I+++NK D S
Sbjct: 296 RSKKAIAEADLVLLLLDASQDLTDEDKNLLN-LTANKKR-------IIILNKQDLGTKIS 347
Query: 450 NEW-NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E K+ + N + T + + + LE AI ++ + + NQRQ L +
Sbjct: 348 QEMIRKITD--NPIIVTSILKQKNMDALENAIEQLFFSGIENSQNQILVTNQRQAGLLAK 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K++L + + I++ +PLD IDL++A LG+I+GE +E+++ +F +FC+GK
Sbjct: 406 AKQSLEDVVNGIDDAMPLDLVQIDLKNAWDTLGEITGESAPDELITQLFSQFCLGK 461
>gi|333898202|ref|YP_004472076.1| tRNA modification GTPase mnmE [Thermoanaerobacterium xylanolyticum
LX-11]
gi|333113467|gb|AEF18404.1| tRNA modification GTPase mnmE [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 458
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 186/476 (39%), Positives = 283/476 (59%), Gaps = 25/476 (5%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
TIAAI T IG G + I+R+SG AV I +FK K++ S + SH V Y
Sbjct: 4 DTIAAISTPIG--EGGISIIRISGNDAVKIASSIFKA-----KRNIDLNSVK--SHTVHY 54
Query: 153 GVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
G + DR + + DEVL M +P +YT+EDVVE+ CHG + +R+L L GA LA+P
Sbjct: 55 GFIYDRKNDEIYDEVLVNVMKSPHTYTKEDVVEINCHGGYIPAKRILELVLRNGARLAEP 114
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGRLD+SQAE V +I +K+ + AL ++G +T ++ + L+
Sbjct: 115 GEFTKRAFLNGRLDISQAEAVIDIIRSKTDLSNKYALMQLKGSVKDKITKIKNDLVALIA 174
Query: 272 EIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
I A +DF ++++ N + ++D I+ D++ L+T+ ++++ GL AI+G+PNVG
Sbjct: 175 HIFALMDFPEEDVELFNDDELIDGINKSISDIDEILKTSEKGRIIREGLNTAIIGKPNVG 234
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNA RAIVT+I GTTRD+IE +++ G+P+ L+DTAGIR+TD+IVE+IGVER
Sbjct: 235 KSSLLNALLNENRAIVTDIPGTTRDIIEEHLSIKGIPINLIDTAGIRQTDEIVERIGVER 294
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA-- 448
S AD+I+ + +D ++L I++ K ++ ++NKID PSA
Sbjct: 295 SREAIDKADLIMFIFDSSRPLEKDDYDILKLIENKK--------VLYILNKIDL-PSAID 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+E +K+ S +V + T +G+ LE + IV + + + N R + L++
Sbjct: 346 IDEVDKL--SGGKYVKLSSFTKEGLDILENTVYNIVMVDGL-SHDEFLLTNMRHKDALIK 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
KE L+ +IE L DF +IDL A LG I+GE +E++++ IF +FC+GK
Sbjct: 403 AKENLLSCLRTIESGLTEDFVSIDLNAAIDHLGLITGETANEDLINEIFERFCVGK 458
>gi|256751460|ref|ZP_05492338.1| tRNA modification GTPase TrmE [Thermoanaerobacter ethanolicus
CCSD1]
gi|256749679|gb|EEU62705.1| tRNA modification GTPase TrmE [Thermoanaerobacter ethanolicus
CCSD1]
Length = 462
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 186/477 (38%), Positives = 277/477 (58%), Gaps = 23/477 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T G +GIVRLSG A++I+ ++FKP K K K + SH +
Sbjct: 5 FDTIAAISTFPG--EAGIGIVRLSGDDALEIISKIFKPYKSKDIK-------KVKSHTLH 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D V DEVL M P +YTRED+VE+ CHG V ++L L+ GA LA+
Sbjct: 56 YGYIVDPETEEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQGARLAE 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I AK++ A A + G S + ++ K + LL
Sbjct: 116 PGEFTKRAFLNGRIDLSQAEAVIDIIRAKTMLANRYAQKQLVGYVGSKIKEMKDKIMGLL 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+ A +DF ++++ L +++ + +D++ + ++ ++++ GL+ AI+G+PNV
Sbjct: 176 VHLLALIDFPEEDVEELERKEILETAKEIVEDIDKLIASSESGRIIREGLKTAIIGKPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA K RAIVT+I GTTRD+IE V V G+P+ L+DTAGIR+TD++VEKIGV
Sbjct: 236 GKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVT 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S+ V AD+I+ + A T ED E+ + + + +I V+NKID P
Sbjct: 296 KSKEVLAEADLILFVLDASRELTKEDYEIFDIL--------TGKNIIFVLNKIDL-PKKI 346
Query: 450 NEWNKVGNSFNDHVF--TCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+E ++ + D + V G+++LE I +V I +N R E L+
Sbjct: 347 DE-KELKDLTKDGIIIEVSTVEKIGLEELENTIYNLVFRGDISLREDEIVINSRHKEALI 405
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+ + +IE D TIDL A LG+I+GE +E++++ IF +FC+GK
Sbjct: 406 NAKKYMESCVEAIEGGYSEDLITIDLNAALDQLGKITGETATEDLINEIFERFCVGK 462
>gi|227518132|ref|ZP_03948181.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0104]
gi|424678170|ref|ZP_18115012.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV103]
gi|424680521|ref|ZP_18117327.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV116]
gi|424682363|ref|ZP_18119135.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV129]
gi|424685990|ref|ZP_18122665.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV25]
gi|424689093|ref|ZP_18125686.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV31]
gi|424693576|ref|ZP_18130005.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV37]
gi|424697982|ref|ZP_18134291.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV41]
gi|424699945|ref|ZP_18136153.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV62]
gi|424702868|ref|ZP_18139009.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV63]
gi|424707478|ref|ZP_18143461.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV65]
gi|424715994|ref|ZP_18145313.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV68]
gi|424720226|ref|ZP_18149336.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV72]
gi|424723331|ref|ZP_18152321.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV73]
gi|424727245|ref|ZP_18155879.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV81]
gi|424741512|ref|ZP_18169859.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV85]
gi|424749393|ref|ZP_18177499.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV93]
gi|227074400|gb|EEI12363.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0104]
gi|402351939|gb|EJU86806.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV103]
gi|402354303|gb|EJU89115.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV116]
gi|402367883|gb|EJV02218.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV129]
gi|402368168|gb|EJV02490.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV25]
gi|402369399|gb|EJV03680.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV31]
gi|402373758|gb|EJV07816.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV37]
gi|402374077|gb|EJV08121.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV41]
gi|402375118|gb|EJV09114.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV62]
gi|402384664|gb|EJV18208.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV65]
gi|402385994|gb|EJV19509.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV63]
gi|402389005|gb|EJV22421.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV68]
gi|402393978|gb|EJV27181.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV72]
gi|402397303|gb|EJV30330.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV81]
gi|402398738|gb|EJV31661.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV73]
gi|402401312|gb|EJV34090.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV85]
gi|402407892|gb|EJV40391.1| tRNA modification GTPase TrmE [Enterococcus faecalis ERV93]
Length = 465
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 189/480 (39%), Positives = 285/480 (59%), Gaps = 29/480 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVRLSG AV I +V++ K K PT H
Sbjct: 8 FDTIAAIST----PPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKV-------PT-HT 55
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D ++ ++DEV+ M AP+++TREDVVE+ CHG V + ++L+ L GA +
Sbjct: 56 IHYGHIVDPQNDQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLREGARM 115
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL + G S+L+ S+R + +
Sbjct: 116 AEPGEFTKRAFLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILN 175
Query: 269 LLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L ++E +D+ D++ L L+++K + ++ L TA K+L+ GL AI+GR
Sbjct: 176 TLAQVEVNIDYPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGR 235
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+DIVE+I
Sbjct: 236 PNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERI 295
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS +D+I++ ++ + T ED +LL + K+ ++++NK+D
Sbjct: 296 GVERSRKALADSDLILLVLNQSEELTEEDRQLLEATKGLKR--------VILLNKMDLPT 347
Query: 447 SAS-NEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCE 504
NE ++ + + + + +V + G+ LET I + Q + N R
Sbjct: 348 KLDPNELQELVPA--EEILSVSVLSNTGLDQLETKIADLFFGGQTGEKDATYISNTRHIA 405
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + +L + + IE +P+D ID+ LG+I G+ + +E+++ +F +FC+GK
Sbjct: 406 LLDQAALSLQEVINGIEAGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465
>gi|333395404|ref|ZP_08477223.1| tRNA modification GTPase TrmE [Lactobacillus coryniformis subsp.
coryniformis KCTC 3167]
gi|336393318|ref|ZP_08574717.1| tRNA modification GTPase TrmE [Lactobacillus coryniformis subsp.
torquens KCTC 3535]
Length = 463
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 185/478 (38%), Positives = 276/478 (57%), Gaps = 27/478 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVRLSG A+ I ++FK G + SH
Sbjct: 8 FDTIAAIST----PPGEGAISIVRLSGEDALPIAEKIFK----------GRDLQKVASHT 53
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D +G V+DEV+ + AP++YTRE++VE+ HG V VL+ L GA L
Sbjct: 54 INYGHIVDPENGEVIDEVMVSVLRAPKTYTREEMVEINTHGGIVATNHVLQLLLSHGARL 113
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DL+QAE+V LI AK+ A A+ + G S L+ ++R + ++
Sbjct: 114 AEPGEFTKRAFLNGRIDLTQAESVMDLIRAKTDRAMQVAVNQLDGNLSRLIKNIRQEILD 173
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L ++E +D+ D + + ++++K + + +E L TA+ K+L+ GL AIVGR
Sbjct: 174 ALAQVEVNIDYPEYDAVETMTTKMLLEKATMVKKQIEQLLATASQGKVLREGLATAIVGR 233
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN ++AIVT++AGTTRDVIE V V VP+ L+DTAGIRETDD VEKI
Sbjct: 234 PNVGKSSLLNYLLHEDKAIVTDVAGTTRDVIEEYVNVRDVPLKLIDTAGIRETDDKVEKI 293
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS+ AD++++ ++ + T ED LL Q K+ ++++NK D
Sbjct: 294 GVERSKQAITQADLVLLILNNSEALTDEDRTLLAATQDKKR--------LVILNKTDLPV 345
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ + + + A+T G+ LE I + + N RQ L
Sbjct: 346 KLDEAELQQTVAPENIIAISALTATGVDQLEQRIADLFWGGIDNSQSTTLVSNARQIGLL 405
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K+AL + + I+ E+P+D ID+ LG+I+G+ +E+L+ +F +FC+GK
Sbjct: 406 NQAKQALDDVLAGIKAEMPVDLVQIDMTRCWDLLGEITGDAYQDELLNQLFSQFCLGK 463
>gi|365925563|ref|ZP_09448326.1| tRNA modification GTPase TrmE [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|420266637|ref|ZP_14769087.1| tRNA modification GTPase TrmE [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|394424914|gb|EJE97963.1| tRNA modification GTPase TrmE [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 464
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 187/479 (39%), Positives = 279/479 (58%), Gaps = 29/479 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
+ TIAAI T PPG A+ IVRLSG A+ I VF SG + SH
Sbjct: 9 YDTIAAIST----PPGEGAISIVRLSGDEALQIAKNVF----------SGKDLTKVKSHT 54
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG +++ R +DEV+ M AP+++TREDVVE+ CHG V +L+ L GA L
Sbjct: 55 INYGHIINPRTKQEIDEVMVSVMKAPKTFTREDVVEINCHGGIVATNEILQLLLSNGARL 114
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFL+GR+DLSQAE V LI AK+ + AL + G S L+ ++R ++
Sbjct: 115 AEPGEFTKRAFLHGRIDLSQAEAVMDLIRAKTDKSMKVALNQLDGNLSHLIRNLRQDILD 174
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L ++E +D+ D++ + L+ +K + ++ L+TA K+L+ GL AI+G+
Sbjct: 175 VLAQVEVNIDYPEYDDVEEMTTKLLKEKAQDTKKRIKQLLQTAKQGKVLREGLATAIIGK 234
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN ++AIVT++AGTTRDVIE V V GVP+ L+DTAGIRET D VEKI
Sbjct: 235 PNVGKSSLLNHLLHEDKAIVTDVAGTTRDVIEEYVNVRGVPLKLVDTAGIRETSDKVEKI 294
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS+ AD++++ ++ + T+ED +L+ ++ NKK I+++NK+D P
Sbjct: 295 GVERSKKAIEQADLVMLVLNQSEPLTAEDQQLI-KLTENKKR-------IVLLNKVDL-P 345
Query: 447 SASNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
S + D + + +V +GI LE I K+ + N R
Sbjct: 346 SKIDFTQLTEKIGKDELLSVSVLKNEGIDKLEEKIAKLFFGGIENSQTTIMVTNARHIGL 405
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + K++L + S IE +P+D ID+ + LG+I+G+ +E+L+ +F +FC+GK
Sbjct: 406 LNQAKDSLDAVLSGIEANMPVDLIQIDMTNCWDLLGEITGDSYQDELLTQLFSQFCLGK 464
>gi|312144699|ref|YP_003996145.1| tRNA modification GTPase TrmE [Halanaerobium hydrogeniformans]
gi|311905350|gb|ADQ15791.1| tRNA modification GTPase TrmE [Halanaerobium hydrogeniformans]
Length = 464
Score = 308 bits (790), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 177/476 (37%), Positives = 281/476 (59%), Gaps = 22/476 (4%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
TIAAI T G G G +R+SGP A +I ++F+ V++ KK ++ Y
Sbjct: 7 DTIAAIATPFG--TGGTGKIRISGPEAYEIGDKIFRSVQEGKKIKDAE------TYTAHY 58
Query: 153 GVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
G + D +DEV+A+ M PRS+T E+V+E CHG LR VL L +GA LA+P
Sbjct: 59 GFIYDPVEEKKIDEVVAIMMRKPRSFTGENVLEFDCHGGMTPLRAVLELVLASGARLAEP 118
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEF+ RAFLNGR+DL+QAE + +I++K+ + D A+ + G S V ++ +E+L
Sbjct: 119 GEFSQRAFLNGRIDLAQAEAIIDIINSKTEKSLDIAVEQLSGKLSQRVDEIKEIAVEVLA 178
Query: 272 EIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+EA +D+ +DE+ + + DK + + +++E L ++ K+ + GL+ IVG+PNVG
Sbjct: 179 HLEAAIDYPEDEIEGFSPEKLDDKFNYIKEEIEKLLLSSRQGKIYKEGLKTVIVGKPNVG 238
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLN + + +RAIVT+I GTTRDVIE V + G+P+ ++DTAGIRET D VEKIGVER
Sbjct: 239 KSSLLNYFLEEKRAIVTDIPGTTRDVIEEYVNLKGIPLKIIDTAGIRETADKVEKIGVER 298
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
+ A AD+++ + G T ED ++ I+ P+I+++NK D A
Sbjct: 299 TRKSAEKADLVLFMLDISQGLTEEDLQIYKLIKDK--------PVIVIVNKTDLP--AQE 348
Query: 451 EWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ +K+ F +H ++ + +G+++L I+ + ++ R L++
Sbjct: 349 DRDKIEQEFKEHNLLWISLLEEKGLEELRQKILNEILDEELSGDDNVIITKSRHKNALLK 408
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+A+ R+ S E +P DF TIDL+D ALG+I+GE ++++++ IF FC+GK
Sbjct: 409 AKKAVERVIVSRETSMPYDFLTIDLKDCLNALGEITGETVADDIIDRIFSDFCLGK 464
>gi|104774816|ref|YP_619796.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116514945|ref|YP_813851.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|385816608|ref|YP_005852999.1| Thiophene and furan oxidation protein [Lactobacillus delbrueckii
subsp. bulgaricus 2038]
gi|418030566|ref|ZP_12669055.1| hypothetical protein LDBUL1632_01849 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|122274323|sp|Q047F9.1|MNME_LACDB RecName: Full=tRNA modification GTPase MnmE
gi|123077174|sp|Q1G7Z4.1|MNME_LACDA RecName: Full=tRNA modification GTPase MnmE
gi|103423897|emb|CAI98939.1| tRNA modification GTPase trmE [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116094260|gb|ABJ59413.1| tRNA modification GTPase trmE [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|325126645|gb|ADY85975.1| Thiophene and furan oxidation protein [Lactobacillus delbrueckii
subsp. bulgaricus 2038]
gi|354686909|gb|EHE87033.1| hypothetical protein LDBUL1632_01849 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 461
Score = 308 bits (790), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 185/478 (38%), Positives = 284/478 (59%), Gaps = 29/478 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G G + IVR+SG AV IV R+FK G + SH +
Sbjct: 8 FDTIAAISTPLG--EGGISIVRVSGEDAVAIVNRLFK----------GKDLEKVPSHTIN 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+A MLAP+++T+ED+VE+ CHG V +L+ L GA +A
Sbjct: 56 YGHIVDPATGQVIDEVMASVMLAPKTFTKEDIVEINCHGGIVVTNDILQLLLANGARMAD 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V +I AK+ A A+ + GG + + ++R + +++L
Sbjct: 116 PGEFTKRAFVNGRIDLTQAESVMDIIRAKTDKARQVAVKQLSGGLLTEIRALRQEILDVL 175
Query: 271 TEIEARLDF---DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
+E +D+ D+E + ++ A+S ++ LETA ++L++GL+ AIVGRP
Sbjct: 176 ANVEVNIDYPEYDEE--EVTAQKLLACAEAVSGKIDRLLETAQEGQILRNGLKTAIVGRP 233
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN ++S++AIVT++AGTTRD +E V+V GVP+ L+DTAGI T+D VEKIG
Sbjct: 234 NVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAGIHHTEDQVEKIG 293
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS+ AD+I++ + T ED +LL K+ I+V+NK D
Sbjct: 294 VERSKKAIAQADLILLLLDGSQELTEEDRQLLELTAGKKR--------IIVLNKTDLGQK 345
Query: 448 -ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ E K S ++ + T + + + +LE I K+ + + NQRQ L
Sbjct: 346 LTAAEIAK--ESGSEVISTSIMMKENLDELEALIKKLFFKGIENSNDQVLVTNQRQAGLL 403
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K+ L + S +E +P+D ID A +LG+I+G+ +E+++++F +FC+GK
Sbjct: 404 AKAKQQLADVASGLEAGMPVDLVQIDFTGAWESLGEITGDSAPDELINDLFSQFCLGK 461
>gi|300769099|ref|ZP_07078988.1| tRNA modification GTPase TrmE [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308182180|ref|YP_003926308.1| tRNA modification GTPase TrmE [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|380034154|ref|YP_004891145.1| GTPase and tRNA-U34 5-formylation enzyme [Lactobacillus plantarum
WCFS1]
gi|418273624|ref|ZP_12889252.1| GTPase and tRNA-U34 5-formylation enzyme [Lactobacillus plantarum
subsp. plantarum NC8]
gi|448819741|ref|YP_007412903.1| tRNA modification GTPase MnmE [Lactobacillus plantarum ZJ316]
gi|32171799|sp|Q88RX5.1|MNME_LACPL RecName: Full=tRNA modification GTPase MnmE
gi|300493339|gb|EFK28518.1| tRNA modification GTPase TrmE [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308047671|gb|ADO00215.1| tRNA modification GTPase TrmE [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|342243397|emb|CCC80631.1| GTPase and tRNA-U34 5-formylation enzyme [Lactobacillus plantarum
WCFS1]
gi|376011238|gb|EHS84562.1| GTPase and tRNA-U34 5-formylation enzyme [Lactobacillus plantarum
subsp. plantarum NC8]
gi|448273238|gb|AGE37757.1| tRNA modification GTPase MnmE [Lactobacillus plantarum ZJ316]
Length = 463
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 185/479 (38%), Positives = 268/479 (55%), Gaps = 28/479 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG + I+R+SG ++V ++FK G R SH
Sbjct: 7 FDTIAAIST----PPGEGGISIIRISGDQTFNVVTQIFK----------GKDLSRVQSHT 52
Query: 150 VEYGVVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D + VDEV+A M AP++YTREDVVE+ CHG V +L+ L GA +
Sbjct: 53 INYGHIVDPDTHQEVDEVMATVMRAPKTYTREDVVEINCHGGLVATNEILQLILSHGARM 112
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGRLDLSQAE V LI AK+ + AL + G S L+ +R ++
Sbjct: 113 AEPGEFTKRAFLNGRLDLSQAEAVMDLIRAKTDKSMKVALNQLDGDLSKLIRHLRQDILD 172
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L ++E +D+ D + + ++ +K ++Q + L TA K+L+ GL AI+GR
Sbjct: 173 VLAQVEVNIDYPEYDAVETMTTKMLKEKATEVAQSINQLLATAKQGKVLREGLATAIIGR 232
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN ++AIVT++AGTTRDVIE V V GVP+ L+DTAGIR+T+D VEKI
Sbjct: 233 PNVGKSSLLNHLLHEDKAIVTDVAGTTRDVIEEYVNVRGVPLKLVDTAGIRDTEDKVEKI 292
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS AD++++ + T+ED ELL +K+ I+++NK D
Sbjct: 293 GVERSRKAIGAADLVLLVLDNSQPLTAEDRELLQETDQSKR--------IVILNKTDLPA 344
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCEQ 505
+D + + G+ LE I K+ I + V N R
Sbjct: 345 RLDQAELAQLVDLSDVLSMSVLEQSGVTQLEQRIAKMFFNEGIESSQNNVMVTNARHIGL 404
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + K+AL +++ + +P+D ID+ LGQI+G+ +E+L +F +FC+GK
Sbjct: 405 LNQAKQALQDVQTGLAAGMPVDLVQIDMTRCWEFLGQITGDSYEDELLDQLFSQFCLGK 463
>gi|229551112|ref|ZP_04439837.1| tRNA modification GTP-binding protein TrmE [Lactobacillus rhamnosus
LMS2-1]
gi|258541097|ref|YP_003175596.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus Lc 705]
gi|385836817|ref|YP_005874592.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus ATCC 8530]
gi|229315504|gb|EEN81477.1| tRNA modification GTP-binding protein TrmE [Lactobacillus rhamnosus
LMS2-1]
gi|257152773|emb|CAR91745.1| tRNA modification GTPase MnmE [Lactobacillus rhamnosus Lc 705]
gi|355396309|gb|AER65739.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus ATCC 8530]
Length = 462
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 186/478 (38%), Positives = 277/478 (57%), Gaps = 28/478 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
+ TIAAI T PPG A+ IVRLSG AV +VFK G + SH
Sbjct: 8 YDTIAAIST----PPGEGAISIVRLSGETAVATANKVFK----------GKDLTQVKSHT 53
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D G+++DEV+ MLAP+++TREDVVE+ CHG V R+L+ L GA +
Sbjct: 54 IHYGHIVDPETGDLIDEVMVSVMLAPKTFTREDVVEINCHGGIVATNRILQLLLGEGARM 113
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DL++AE+V LI AK+ A A+ + G L+ +R + +E
Sbjct: 114 AEPGEFTKRAFLNGRIDLTEAESVMDLIRAKTDRAMQVAVNQLDGNLHHLIKQLRQEILE 173
Query: 269 LLTEIEARLDFDD-EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
+L ++E +D+ + + + ++++K + + +E L TA+ K+L+ GL AIVGRP
Sbjct: 174 VLAQVEVNIDYPEYDTDEMTTKMLLEKAQTVKKAIEQLLTTASQGKVLREGLATAIVGRP 233
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN E+AIVT++AGTTRDV+E V V GVP+ L+DTAGI +T D VEKIG
Sbjct: 234 NVGKSSLLNHMLHEEKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTDKVEKIG 293
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD+I++ + + T+ED +LL K+ I+V+NK D P+
Sbjct: 294 VERSRQAITQADLILLVLDQSEPLTTEDKQLLAATADKKR--------IIVLNKQDL-PA 344
Query: 448 ASNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ + D + A+ T G+ L+ I K+ + G N RQ L
Sbjct: 345 RLDTAALLQLVDADEIIKTAIPTSDGMDALDERIAKLFFGGIENSQGTVMVSNARQIGLL 404
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++L + + I +P+D ID+ A LG+I+GE +E+++ +F +FC+GK
Sbjct: 405 RQASKSLDAVMAGIHAGMPIDLVQIDMTAAWDKLGEITGESAPDELITQLFSQFCLGK 462
>gi|15606214|ref|NP_213591.1| tRNA modification GTPase TrmE [Aquifex aeolicus VF5]
gi|6647876|sp|O67030.1|MNME_AQUAE RecName: Full=tRNA modification GTPase MnmE
gi|2983408|gb|AAC06992.1| thiophene and furan oxidation protein [Aquifex aeolicus VF5]
Length = 448
Score = 308 bits (789), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 193/472 (40%), Positives = 273/472 (57%), Gaps = 30/472 (6%)
Query: 95 IAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGV 154
I AI T G A+GIVRLSG +D+V + FK ++ K + + +GV
Sbjct: 5 IVAIATPYG--ESAIGIVRLSGKGVLDLVKKFFKTKREIKPRYA------------HFGV 50
Query: 155 VLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEF 214
+ D G +DE + + AP SYT ED+VEL HG+ L+R L + AGA LA+PGEF
Sbjct: 51 LYDDKGEELDEGVLIYYKAPHSYTGEDMVELNLHGNPRILKRALELFVNAGARLAEPGEF 110
Query: 215 TLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIE 274
T RAFLNG+LDL+QAE V +LISAK+ A AL + G S + +R +ELL +E
Sbjct: 111 TKRAFLNGKLDLTQAEAVAELISAKTELARKVALKQLHGELSKHIRPLRETLLELLAYVE 170
Query: 275 ARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSS 333
A ++F ++++P L V+ + + + + L+TA K ++ G+++AIVGRPNVGKSS
Sbjct: 171 ADIEFAEEDIPTLTKEQVIQMVDKVIEGINELLKTAKTGKFIREGVKLAIVGRPNVGKSS 230
Query: 334 LLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEA 393
L NA K ERAIVT+IAGTTRD IE ++ + GVPV L+DTAGIRET D+VE+IGVERS+
Sbjct: 231 LFNALLKEERAIVTDIAGTTRDFIEETLQIKGVPVRLVDTAGIRETKDLVERIGVERSKQ 290
Query: 394 VALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWN 453
AD+I+ + A T ED + I+ I+V NK+D A+ E
Sbjct: 291 KVKEADLILFVIDASQEITEEDLRIYEEIKEK--------DHIVVANKVDLGIRANLEKF 342
Query: 454 KVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEAL 513
K G V A+ G G+++L I+K VG + + +V R L + KE L
Sbjct: 343 K-GEKI---VKVSALKGTGLEELSEEILKKVGANLEESVNIYISV--RHETLLKKAKEVL 396
Query: 514 VRLKSSI-EEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
R K E+++ + +DLR+A+ LG+I GE +E++L IF FCIGK
Sbjct: 397 ERFKEEFREKDISPEIAMLDLREASDYLGEILGEITTEDLLGKIFSTFCIGK 448
>gi|392950364|ref|ZP_10315921.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Lactobacillus
pentosus KCA1]
gi|339638039|emb|CCC17079.1| tRNA modification GTPase mnme [Lactobacillus pentosus IG1]
gi|392434646|gb|EIW12613.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Lactobacillus
pentosus KCA1]
Length = 463
Score = 308 bits (789), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 187/480 (38%), Positives = 275/480 (57%), Gaps = 30/480 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG + I+R+SG ++V ++FK G + SH
Sbjct: 7 FDTIAAIST----PPGEGGISIIRISGDQTFNVVTQIFK----------GKDLSQVKSHT 52
Query: 150 VEYGVVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D + VDEV+A M AP++YTREDVVE+ CHG V +L+ L GA +
Sbjct: 53 INYGHIVDPDTHQEVDEVMASVMRAPKTYTREDVVEINCHGGLVATNEILQLILSHGARM 112
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGRLDLSQAE V LI AK+ + AL + G S L+ +R ++
Sbjct: 113 AEPGEFTKRAFLNGRLDLSQAEAVMDLIRAKTDKSMKVALNQLDGDLSKLIRHLRQDILD 172
Query: 269 LLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L ++E +D+ D + + ++ +K ++Q ++ L TA K+L+ GL AI+GR
Sbjct: 173 VLAQVEVNIDYPEYDAVETMTTKMLKEKATEVAQSIDQLLATAKQGKVLREGLATAIIGR 232
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN ++AIVT++AGTTRDVIE V V GVP+ L+DTAGIR+T+D VEKI
Sbjct: 233 PNVGKSSLLNHLLHEDKAIVTDVAGTTRDVIEEYVNVRGVPLKLVDTAGIRDTEDKVEKI 292
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS AD++++ + + T+ED ELL +K+ I+++NK D P
Sbjct: 293 GVERSRKAIGAADLVLLVLDSSRPLTTEDQELLQETAQSKR--------IVILNKTDL-P 343
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQ-GIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCE 504
+ ++ V + +V Q G+ LE I K+ I + V N R
Sbjct: 344 AQLDQAELAKFVDPKDVLSMSVLEQSGVTQLEQRIAKMFFSEGIESNQNSVMVTNARHIG 403
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + K+AL +++ + +P+D ID+ LGQI+G+ +E+L +F +FC+GK
Sbjct: 404 LLNQAKQALQDVQTGLAAGMPVDLVQIDMTRCWEFLGQITGDSYEDELLDQLFSQFCLGK 463
>gi|300812005|ref|ZP_07092461.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300497031|gb|EFK32097.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 461
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 185/478 (38%), Positives = 283/478 (59%), Gaps = 29/478 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G G + IVR+SG AV IV R+FK G + SH +
Sbjct: 8 FDTIAAISTPLG--EGGISIVRVSGEDAVAIVNRLFK----------GKDLEKVPSHTIN 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+A MLAP+++T+ED+VE+ CHG V +L+ L GA +A
Sbjct: 56 YGHIVDPATGQVIDEVMASVMLAPKTFTKEDIVEINCHGGIVVTNDILQLLLANGARMAD 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V +I AK+ A A+ + GG + + ++R + +++L
Sbjct: 116 PGEFTKRAFVNGRIDLTQAESVMDIIRAKTDKARQVAVKQLSGGLLTEIRALRQEILDVL 175
Query: 271 TEIEARLDF---DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
+E +D+ D+E + ++ A+S ++ LETA ++L++GL+ AIVGRP
Sbjct: 176 ANVEVNIDYPEYDEE--EVTAQKMLACAEAVSGKIDRLLETAQEGQILRNGLKTAIVGRP 233
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN ++S++AIVT++AGTTRD +E V+V GVP+ L+DTAGI T+D VEKIG
Sbjct: 234 NVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAGIHHTEDQVEKIG 293
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS+ AD+I++ + T ED LL K+ I+V+NK D
Sbjct: 294 VERSKKAIAQADLILLLLDGSQELTEEDRRLLELTAGKKR--------IIVLNKTDLGQK 345
Query: 448 -ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ E K S ++ + T + + + +LE I K+ + + NQRQ L
Sbjct: 346 LTAAEIAK--ESGSEVISTSIMMKENLDELEALIKKLFFKGIENSNDQVLVTNQRQAGLL 403
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K+ L + S +E +P+D ID A +LG+I+G+ +E+++++F +FC+GK
Sbjct: 404 AKAKQQLADVASGLESGMPVDLVQIDFTGAWESLGEITGDSAPDELINDLFSQFCLGK 461
>gi|395244403|ref|ZP_10421370.1| tRNA modification GTPase TrmE [Lactobacillus hominis CRBIP 24.179]
gi|394483293|emb|CCI82378.1| tRNA modification GTPase TrmE [Lactobacillus hominis CRBIP 24.179]
Length = 461
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 181/477 (37%), Positives = 281/477 (58%), Gaps = 27/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G G + IVRLSG AV I +VFK G+ + SH +
Sbjct: 8 FDTIAAISTPLG--EGGISIVRLSGQDAVKIANKVFK----------GANLAKVASHTIH 55
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG V+D N V+DE +A MLAP+++TRE++VE+ CHG V +L+ L GA +A
Sbjct: 56 YGHVIDPETNKVIDECMATVMLAPKTFTRENIVEISCHGGIVVTNDILQLLLANGARMAD 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V ++ AK+ A A+ ++GG + + ++R ++ +
Sbjct: 116 PGEFTKRAFMNGRIDLTQAESVMDMVRAKTDRARQVAMNQLEGGLMTKIKAMRQDLLDTM 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+ E +D+ + +M + + K ++S+ ++ L TA K+++SGL AIVG+PNV
Sbjct: 176 AQEEVNIDYPEYDMDDMTGQEMKQKAISVSKKIDELLNTAQEGKIIRSGLATAIVGKPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ++ ++AIVT++AGTTRD +E V+V G + L+DTAGI ET D VEKIGVE
Sbjct: 236 GKSSLLNYLTQDDKAIVTDVAGTTRDTLEEYVSVKGAALKLIDTAGIHETSDKVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ + + ED +LL ++ K+ I+V+NK D S
Sbjct: 296 RSKKAVDQADLVLLLLDSSRELEQEDRDLLEFTKNKKR--------IIVLNKNDLGQKIS 347
Query: 450 NEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
E K D V T + + + LE AI K+ + + NQRQ L+
Sbjct: 348 PETIK---KMTDSPVVVTSVLQKENLDQLENAIEKLFFKGIENSADQVLVTNQRQASLLV 404
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++AL + +++++PLD IDL +A LG+I+GE +E+++ +F +FC+GK
Sbjct: 405 KARQALAEVIKGVDDDMPLDLVQIDLTNAWNDLGEITGESAPDELITQLFSQFCLGK 461
>gi|150392473|ref|YP_001322522.1| tRNA modification GTPase TrmE [Alkaliphilus metalliredigens QYMF]
gi|166988167|sp|A6TXE5.1|MNME_ALKMQ RecName: Full=tRNA modification GTPase MnmE
gi|149952335|gb|ABR50863.1| tRNA modification GTPase TrmE [Alkaliphilus metalliredigens QYMF]
Length = 461
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 188/476 (39%), Positives = 287/476 (60%), Gaps = 23/476 (4%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
TIAAI T+ G +GIVR+SG A+ I+ +VF+ + KK K + + Y
Sbjct: 5 DTIAAIATAHG--EAGIGIVRISGEKALHIIDQVFQSKQGKKLKD-------ISPRRITY 55
Query: 153 GVVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
G ++D N +DEVL M P +YT EDVVE+ CHG + ++R+L L GA A
Sbjct: 56 GHIIDTERNERIDEVLVSYMKGPHTYTTEDVVEINCHGGMIPVKRILELILRKGARAADA 115
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V L+SAK+ D AL ++G S V V+ + +++L
Sbjct: 116 GEFTKRAFLNGRIDLAQAEAVMDLVSAKTDMGFDVALNQLEGSLSKRVKKVKDELLDMLA 175
Query: 272 EIEARLDFDDE-MPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
IE +DF DE + + L+L++ + + + ++ LETA+ K+L+ GL IVG+PNVG
Sbjct: 176 HIEVSIDFSDEDVDEVTLDLLLKQSMEIEKKIKVLLETADTGKILREGLNTVIVGKPNVG 235
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNA K RAIVTE+ GTTRD IE + G+P+ L+DTAGIRET+DIVEKIGVER
Sbjct: 236 KSSLLNALLKESRAIVTEVPGTTRDAIEEHFNIRGIPLNLIDTAGIRETEDIVEKIGVER 295
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S+A AD+II+ + A T ED +++ ++S K ++++NK D ++
Sbjct: 296 SKAFFNKADLIILMLDASRELTPEDLQIMELVKSKK--------ALILVNKTDL--TSQI 345
Query: 451 EWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+++++ + + + G++++E A+++IV + A N R L R
Sbjct: 346 DYDRIIEIVGEKKVIKISLIEESGLEEVEEALVEIVYKGETRAKDSLLVTNVRHKNALER 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
E+L +I++++PLDF +D+++A ALG+I+G+ + E++L +IF FCIGK
Sbjct: 406 ALESLTDGVQAIKQKMPLDFVEVDVKNAWDALGEITGDTVGEDLLDHIFQNFCIGK 461
>gi|199598240|ref|ZP_03211661.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus HN001]
gi|199590843|gb|EDY98928.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus HN001]
Length = 462
Score = 308 bits (788), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 185/478 (38%), Positives = 277/478 (57%), Gaps = 28/478 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
+ TIAAI T PPG A+ IVRLSG AV +VFK G + SH
Sbjct: 8 YDTIAAIST----PPGEGAISIVRLSGETAVATANKVFK----------GKNLTQVKSHT 53
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D G+++DEV+ MLAP+++TREDVVE+ CHG V R+L+ L GA +
Sbjct: 54 IHYGHIVDPETGDLIDEVMVSVMLAPKTFTREDVVEINCHGGIVATNRILQLLLGEGARM 113
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DL++AE+V LI AK+ A A+ + G L+ +R + +E
Sbjct: 114 AEPGEFTKRAFLNGRIDLTEAESVMDLIRAKTDRAMQVAVNQLDGNLHHLIKQLRQEILE 173
Query: 269 LLTEIEARLDFDD-EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
+L ++E +D+ + + + ++++K + + +E L TA+ K+L+ GL AIVGRP
Sbjct: 174 VLAQVEVNIDYPEYDTDEMTTKMLLEKAQTVKKAIEQLLTTASQGKVLREGLATAIVGRP 233
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN ++AIVT++AGTTRDV+E V V GVP+ L+DTAGI +T D VEKIG
Sbjct: 234 NVGKSSLLNHMLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTDKVEKIG 293
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD+I++ + + T+ED +LL K+ I+V+NK D P+
Sbjct: 294 VERSRQAITQADLILLVLDQSEPLTTEDKQLLAATADKKR--------IIVLNKQDL-PA 344
Query: 448 ASNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ + D + A+ T G+ L+ I K+ + G N RQ L
Sbjct: 345 RLDTTALLQLVDADEIIKTAIPTSDGMDALDERIAKLFFGGIENSQGTVMVSNARQIGLL 404
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++L + + I +P+D ID+ A LG+I+GE +E+++ +F +FC+GK
Sbjct: 405 RQASKSLDAVMAGIHAGMPIDLVQIDMTAAWDKLGEITGESAPDELITQLFSQFCLGK 462
>gi|320117061|ref|YP_004187220.1| tRNA modification GTPase TrmE [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|319930152|gb|ADV80837.1| tRNA modification GTPase TrmE [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 462
Score = 308 bits (788), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 186/477 (38%), Positives = 277/477 (58%), Gaps = 23/477 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T G +GIVRLSG A++I+ ++FKP K K K + SH +
Sbjct: 5 FDTIAAISTFPG--EAGIGIVRLSGDDALEIISKIFKPYKSKDIK-------KVKSHTLH 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D V DEVL M P +YTRED+VE+ CHG V ++L L+ GA LA+
Sbjct: 56 YGHIVDPETEEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQGARLAE 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I AK++ A A + G S + ++ K + LL
Sbjct: 116 PGEFTKRAFLNGRIDLSQAEAVIDIIRAKTMLANRYAQKQLVGYVGSKIKEMKDKIMGLL 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+ A +DF ++++ L +++ + +D++ + ++ ++++ GL+ AI+G+PNV
Sbjct: 176 VHLLALIDFPEEDVEELERKEILETAKEIVEDIDKLIASSESGRIIREGLKTAIIGKPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA K RAIVT+I GTTRD+IE V V G+P+ L+DTAGIR+TD++VEKIGV
Sbjct: 236 GKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVT 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S+ V AD+I+ + A T ED E+ + + + +I V+NKID P
Sbjct: 296 KSKEVLAEADLILFVLDASRELTKEDYEIFDIL--------TGKNIIFVLNKIDL-PKKI 346
Query: 450 NEWNKVGNSFNDHVF--TCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+E ++ + D + V G+++LE I +V I +N R E L+
Sbjct: 347 DE-KELKDLTKDGIIIEVSTVEKIGLEELENTIYNLVFRGDISLREDEIVINSRHKEALI 405
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+ + +IE D TIDL A LG+I+GE +E++++ IF +FC+GK
Sbjct: 406 NAKKYMESCVEAIEGGYSEDLITIDLNAALDQLGKITGETATEDLINEIFERFCVGK 462
>gi|334881381|emb|CCB82249.1| tRNA modification GTPase mnmE [Lactobacillus pentosus MP-10]
Length = 463
Score = 308 bits (788), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 187/480 (38%), Positives = 275/480 (57%), Gaps = 30/480 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG + I+R+SG ++V ++FK G + SH
Sbjct: 7 FDTIAAIST----PPGEGGISIIRISGDQTFNVVTQIFK----------GKDLSQVKSHT 52
Query: 150 VEYGVVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D + VDEV+A M AP++YTREDVVE+ CHG V +L+ L GA +
Sbjct: 53 INYGHIVDPDTHQEVDEVMASVMRAPKTYTREDVVEINCHGGLVATNEILQLILSHGARM 112
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGRLDLSQAE V LI AK+ + AL + G S L+ +R ++
Sbjct: 113 AEPGEFTKRAFLNGRLDLSQAEAVMDLIRAKTDKSMKVALNQLDGDLSKLIRYLRQDILD 172
Query: 269 LLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L ++E +D+ D + + ++ +K ++Q ++ L TA K+L+ GL AI+GR
Sbjct: 173 VLAQVEVNIDYPEYDAVETMTTKMLKEKATEVAQSIDQLLATAKQGKVLREGLATAIIGR 232
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN ++AIVT++AGTTRDVIE V V GVP+ L+DTAGIR+T+D VEKI
Sbjct: 233 PNVGKSSLLNHLLHEDKAIVTDVAGTTRDVIEEYVNVRGVPLKLVDTAGIRDTEDKVEKI 292
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS AD++++ + + T+ED ELL +K+ I+++NK D P
Sbjct: 293 GVERSRKAIGAADLVLLVLDSSRPLTTEDQELLQETAQSKR--------IVILNKTDL-P 343
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQ-GIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCE 504
+ ++ V + +V Q G+ LE I K+ I + V N R
Sbjct: 344 AQLDQAELAKFVDPKDVLSMSVLEQSGVTQLEQRIAKMFFSEGIESNQNSVMVTNARHIG 403
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + K+AL +++ + +P+D ID+ LGQI+G+ +E+L +F +FC+GK
Sbjct: 404 LLNQAKQALQDVQTGLAAGMPVDLVQIDMTRCWEFLGQITGDSYEDELLDQLFSQFCLGK 463
>gi|167041019|ref|YP_001664004.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X514]
gi|205829185|sp|B0K5N4.1|MNME_THEPX RecName: Full=tRNA modification GTPase MnmE
gi|166855259|gb|ABY93668.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X514]
Length = 460
Score = 308 bits (788), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 186/477 (38%), Positives = 277/477 (58%), Gaps = 23/477 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T G +GIVRLSG A++I+ ++FKP K K K + SH +
Sbjct: 3 FDTIAAISTFPG--EAGIGIVRLSGDDALEIISKIFKPYKSKDIK-------KVKSHTLH 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D V DEVL M P +YTRED+VE+ CHG V ++L L+ GA LA+
Sbjct: 54 YGHIVDPETEEVYDEVLVSIMEKPNTYTREDIVEINCHGGIVVTSKILELVLKQGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I AK++ A A + G S + ++ K + LL
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVIDIIRAKTMLANRYAQKQLVGYVGSKIKEMKDKIMGLL 173
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+ A +DF ++++ L +++ + +D++ + ++ ++++ GL+ AI+G+PNV
Sbjct: 174 VHLLALIDFPEEDVEELERKEILETAKEIVEDIDKLIASSESGRIIREGLKTAIIGKPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA K RAIVT+I GTTRD+IE V V G+P+ L+DTAGIR+TD++VEKIGV
Sbjct: 234 GKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVT 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S+ V AD+I+ + A T ED E+ + + + +I V+NKID P
Sbjct: 294 KSKEVLAEADLILFVLDASRELTKEDYEIFDIL--------TGKNIIFVLNKIDL-PKKI 344
Query: 450 NEWNKVGNSFNDHVF--TCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+E ++ + D + V G+++LE I +V I +N R E L+
Sbjct: 345 DE-KELKDLTKDGIIIEVSTVEKIGLEELENTIYNLVFRGDISLREDEIVINSRHKEALI 403
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+ + +IE D TIDL A LG+I+GE +E++++ IF +FC+GK
Sbjct: 404 NAKKYMESCVEAIEGGYSEDLITIDLNAALDQLGKITGETATEDLINEIFERFCVGK 460
>gi|167038669|ref|YP_001666247.1| tRNA modification GTPase TrmE [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|205829184|sp|B0K8H9.1|MNME_THEP3 RecName: Full=tRNA modification GTPase MnmE
gi|166857503|gb|ABY95911.1| tRNA modification GTPase TrmE [Thermoanaerobacter pseudethanolicus
ATCC 33223]
Length = 460
Score = 308 bits (788), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 186/477 (38%), Positives = 277/477 (58%), Gaps = 23/477 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T G +GIVRLSG A++I+ ++FKP K K K + SH +
Sbjct: 3 FDTIAAISTFPG--EAGIGIVRLSGDDALEIISKIFKPYKSKDIK-------KVKSHTLH 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D V DEVL M P +YTRED+VE+ CHG V ++L L+ GA LA+
Sbjct: 54 YGHIVDPETEEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I AK++ A A + G S + ++ K + LL
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVIDIIRAKTMLANRYAQKQLVGYVGSKIKEMKDKIMGLL 173
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+ A +DF ++++ L +++ + +D++ + ++ ++++ GL+ AI+G+PNV
Sbjct: 174 VHLLALIDFPEEDVEELERKEILETAKEIVEDIDKLIASSESGRIIREGLKTAIIGKPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA K RAIVT+I GTTRD+IE V V G+P+ L+DTAGIR+TD++VEKIGV
Sbjct: 234 GKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVT 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S+ V AD+I+ + A T ED E+ + + + +I V+NKID P
Sbjct: 294 KSKEVLAEADLILFVLDASRELTKEDYEIFDIL--------TGKNIIFVLNKIDL-PKKI 344
Query: 450 NEWNKVGNSFNDHVF--TCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+E ++ + D + V G+++LE I +V I +N R E L+
Sbjct: 345 DE-KELKDLTKDGIIIEVSTVEKIGLEELENTIYNLVFRGDISLREDEIVINSRHKEALI 403
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+ + +IE D TIDL A LG+I+GE +E++++ IF +FC+GK
Sbjct: 404 NAKKYMESCVEAIEGGYSEDLITIDLNAALDQLGKITGETATEDLINEIFERFCVGK 460
>gi|300913770|ref|ZP_07131087.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X561]
gi|307725544|ref|YP_003905295.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X513]
gi|300890455|gb|EFK85600.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X561]
gi|307582605|gb|ADN56004.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X513]
Length = 462
Score = 308 bits (788), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 186/477 (38%), Positives = 277/477 (58%), Gaps = 23/477 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T G +GIVRLSG A++I+ ++FKP K K K + SH +
Sbjct: 5 FDTIAAISTFPG--EAGIGIVRLSGDDALEIISKIFKPYKSKDIK-------KVKSHTLH 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D V DEVL M P +YTRED+VE+ CHG V ++L L+ GA LA+
Sbjct: 56 YGHIVDPETEEVYDEVLVSIMEKPNTYTREDIVEINCHGGIVVTSKILELVLKQGARLAE 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I AK++ A A + G S + ++ K + LL
Sbjct: 116 PGEFTKRAFLNGRIDLSQAEAVIDIIRAKTMLANRYAQKQLVGYVGSKIKEMKDKIMGLL 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+ A +DF ++++ L +++ + +D++ + ++ ++++ GL+ AI+G+PNV
Sbjct: 176 VHLLALIDFPEEDVEELERKEILETAKEIVEDIDKLIASSESGRIIREGLKTAIIGKPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA K RAIVT+I GTTRD+IE V V G+P+ L+DTAGIR+TD++VEKIGV
Sbjct: 236 GKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVT 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S+ V AD+I+ + A T ED E+ + + + +I V+NKID P
Sbjct: 296 KSKEVLAEADLILFVLDASRELTKEDYEIFDIL--------TGKNIIFVLNKIDL-PKKI 346
Query: 450 NEWNKVGNSFNDHVF--TCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+E ++ + D + V G+++LE I +V I +N R E L+
Sbjct: 347 DE-KELKDLTKDGIIIEVSTVEKIGLEELENTIYNLVFRGDISLREDEIVINSRHKEALI 405
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+ + +IE D TIDL A LG+I+GE +E++++ IF +FC+GK
Sbjct: 406 NAKKYMESCVEAIEGGYSEDLITIDLNAALDQLGKITGETATEDLINEIFERFCVGK 462
>gi|336054984|ref|YP_004563271.1| tRNA modification GTPase mnmE [Lactobacillus kefiranofaciens ZW3]
gi|333958361|gb|AEG41169.1| tRNA modification GTPase mnmE [Lactobacillus kefiranofaciens ZW3]
Length = 461
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 177/475 (37%), Positives = 277/475 (58%), Gaps = 23/475 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T IG G + IVR+SG AV I VFK G+ + +H +
Sbjct: 8 FDTIAAISTPIG--EGGISIVRMSGEDAVKIANEVFK----------GADLSKVPTHTIH 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G +DE + + AP+++TRED+VE+ CHG V +L+ L GA +A
Sbjct: 56 YGHIIDPDTGKTIDEAMVTVLCAPKTFTREDIVEINCHGGIVVTNHILQLLLSHGARMAD 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V ++ AK+ A A+ + GG + ++R + + L
Sbjct: 116 PGEFTKRAFVNGRIDLTQAESVMDIVRAKTDKARQVAVGQLAGGLLHKIKAMRQEILNTL 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+E +D+ + + + + D +++ + +++ L+TA K+L++GL AIVGRPNV
Sbjct: 176 ANVEVNIDYPEYDADTVTAKQMADTANSVIKKIDHLLKTAQEGKILRNGLATAIVGRPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ++S++AIVT++AGTTRD +E V+V GVP+ L+DTAGI TDD VEKIGVE
Sbjct: 236 GKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTDDKVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ + A T+ED LL +S K+ I+++NK D +
Sbjct: 296 RSKKALERADLVLLLIDASQDLTTEDRALLEETKSKKR--------IIILNKSDLGQKIT 347
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
E K + +D + T + Q + LE I K+ + + NQRQ L +
Sbjct: 348 AEHMK-KLTGSDVISTSILKEQNLDQLEELINKLFFAGIENSNDQIMVTNQRQASLLSKA 406
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+ L + ++++ +P+D ID A LG+I+GE +E+++ +F +FC+GK
Sbjct: 407 KKELQDVVKAVDDGVPVDIAQIDFTGAWDTLGEITGESAPDELVTQLFSQFCLGK 461
>gi|227893842|ref|ZP_04011647.1| tRNA modification GTP-binding protein TrmE [Lactobacillus
ultunensis DSM 16047]
gi|227864331|gb|EEJ71752.1| tRNA modification GTP-binding protein TrmE [Lactobacillus
ultunensis DSM 16047]
Length = 461
Score = 307 bits (787), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 176/476 (36%), Positives = 279/476 (58%), Gaps = 25/476 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T IG G + IVR+SG AV I +VFK G+ + +H +
Sbjct: 8 FDTIAAISTPIG--EGGISIVRMSGEDAVKIANKVFK----------GADLSKVPTHTIH 55
Query: 152 YGVVLDRH-GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D H G +DE + + AP+++TRED+VE+ CHG V +L+ L GA +A+
Sbjct: 56 YGHIIDPHTGKTIDESMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQLLLSNGARMAE 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V ++ AK+ A A+ + GG + ++R + ++ L
Sbjct: 116 PGEFTKRAFVNGRIDLTQAESVMDIVRAKTDKARQVAVHQLAGGLLHKIRALRQEILDTL 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+E +D+ + + + + D + + ++ L+TA K+L++GL AIVGRPNV
Sbjct: 176 ANVEVNIDYPEYDADQVTAKQMSDTATDVIKKIDRLLKTAQEGKILRNGLATAIVGRPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ++S++AIVT++AGTTRD +E V+V GVP+ L+DTAGI T+D VEKIGVE
Sbjct: 236 GKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTEDKVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ + A T+ED L+ +S K+ I+++NK D +
Sbjct: 296 RSKKALERADLVLLLIDASQDLTAEDKALIEETKSKKR--------IIILNKSDLGQKIT 347
Query: 450 -NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
++ K+ S D + T + + + DLE I K+ + + NQRQ L +
Sbjct: 348 VDQMKKLTGS--DVISTSILQEKNLDDLEEMINKLFFAGIENSNDQIMVTNQRQASLLTK 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+ L + +++ +P+D ID A LG+I+GE +E+++ +F +FC+GK
Sbjct: 406 AKKELQDVVQAVDNGIPVDIAQIDFTGAWDTLGEITGESAPDELITQLFSQFCLGK 461
>gi|403382753|ref|ZP_10924810.1| protein MnmE [Paenibacillus sp. JC66]
Length = 458
Score = 307 bits (787), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 185/477 (38%), Positives = 271/477 (56%), Gaps = 23/477 (4%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
TIAAI T +G G + ++R+SGP A+ V ++F+ S S +H V
Sbjct: 2 NMDTIAAISTPLG--EGGISVIRVSGPDAIAGVDKIFR---------SKSRLPEAQTHTV 50
Query: 151 EYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG +++ + +DEVL M APRS+T EDVVE+ CHG + ++ VL LE G LA
Sbjct: 51 HYGHIVNPQSQEKIDEVLVTLMRAPRSFTTEDVVEIGCHGGMLSVKHVLELLLEQGLRLA 110
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V +I +KS A AL +G S + +R +EL
Sbjct: 111 EPGEFTKRAFLNGRIDLSQAEAVIDIIRSKSDRAHKMALKQAEGSLSKKIREIRHHLVEL 170
Query: 270 LTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+ IE +D+ + ++ + + +K + ++E L TA K+++ G+ AIVGRPN
Sbjct: 171 MAHIEVNIDYPEHDVEEMTSRFIQEKCEKATAEIEKLLRTAEQGKVIREGIVTAIVGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLNA ++ +AIVT+I GTTRDVIE VT+ G+P+ LLDTAGIRET D+VE+IGV
Sbjct: 231 VGKSSLLNALAQDNKAIVTDIPGTTRDVIEEYVTMNGIPLKLLDTAGIRETSDLVEQIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
E+S V AD+I++ ++A + ++ EL+ + S M+++INK D P
Sbjct: 291 EKSRNVLSDADLILLVLNANEPLHEDEMELITQF--------SDRQMLVLINKTDL-PRK 341
Query: 449 SNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ + D + +V QG+ DLE I I Q+ A + N R L
Sbjct: 342 LDYTPLLEYIEADQLIEMSVQNNQGLDDLERGISSIFFSGQLEADDSAYVSNVRHIHLLK 401
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K +L + E +P+D ID+R A LG++ G+ I E ++ IF +FC+GK
Sbjct: 402 LAKASLAEAMQAAESFVPIDMIQIDVRQAWEHLGELVGDTIGESLIDQIFSQFCLGK 458
>gi|227889160|ref|ZP_04006965.1| tRNA modification GTPase TrmE [Lactobacillus johnsonii ATCC 33200]
gi|227850389|gb|EEJ60475.1| tRNA modification GTPase TrmE [Lactobacillus johnsonii ATCC 33200]
Length = 487
Score = 307 bits (787), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 181/475 (38%), Positives = 282/475 (59%), Gaps = 23/475 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T IG G + IVRLSG AV I ++FK G+ + SH +
Sbjct: 34 FDTIAAISTPIG--EGGISIVRLSGEDAVAIANKLFK----------GADLTKVPSHTIH 81
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + +VVDE + + AP+++TRED+VE+ CHG + +L+ L GA +A
Sbjct: 82 YGHIVDPKTKDVVDETMVSVLRAPKTFTREDMVEINCHGGMIVTNDILQLLLANGARMAD 141
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V ++ AK+ + A+ + GG + ++R + ++ +
Sbjct: 142 PGEFTKRAFMNGRIDLTQAESVMDIVRAKTDKSRQVAMTQLAGGLLDKIRTMRQELLDTM 201
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
E +D+ + +M L + K +S+ ++ L+TA K++++GL AIVGRPNV
Sbjct: 202 AHEEVNIDYPEYDMDDLTSQEMKKKAQEVSKQIDQLLKTAQEGKIIRNGLATAIVGRPNV 261
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ++ ++AIVT+IAGTTRD +E V+V GVP+ L+DTAGI T+D VEKIGVE
Sbjct: 262 GKSSLLNYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTEDKVEKIGVE 321
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ + A T ED LLN + +NKK I+++NK D S
Sbjct: 322 RSKKAIAEADLVLLLLDASQDLTDEDKNLLN-LTANKKR-------IIILNKQDLGTKIS 373
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
E + N + T + + + LE AI ++ + + NQRQ L +
Sbjct: 374 QEMIREITD-NPIIVTSILKQKNMDALENAIEQLFFSGIENSQNQILVTNQRQAGLLAKA 432
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K++L + + I++ +PLD IDL++A LG+I+GE +E+++ +F +FC+GK
Sbjct: 433 KQSLEDVVNGIDDAMPLDLVQIDLKNAWDTLGEITGESAPDELITQLFSQFCLGK 487
>gi|423077484|ref|ZP_17066183.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus ATCC 21052]
gi|357554103|gb|EHJ35833.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus ATCC 21052]
Length = 531
Score = 307 bits (787), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 184/476 (38%), Positives = 275/476 (57%), Gaps = 24/476 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
+ TIAAI T G GA+ IVRLSG AV +VFK G + SH +
Sbjct: 77 YDTIAAISTPTG--EGAISIVRLSGETAVATANKVFK----------GKDLTQVKSHTIH 124
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G+++DEV+ MLAP+++TREDVVE+ CHG V R+L+ L GA +A+
Sbjct: 125 YGHIVDPETGDLIDEVMVSVMLAPKTFTREDVVEINCHGGIVATNRILQLLLGEGARMAE 184
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL++AE+V LI AK+ A A+ + G L+ +R + +E+L
Sbjct: 185 PGEFTKRAFLNGRIDLTEAESVMDLIRAKTDRAMQVAVNQLDGNLHHLIKQLRQEILEVL 244
Query: 271 TEIEARLDFDD-EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ + + + ++++K + + +E L TA+ K+L+ GL AIVGRPNV
Sbjct: 245 AQVEVNIDYPEYDTDEMTTKMLLEKAQTVKKAIEQLLTTASQGKVLREGLATAIVGRPNV 304
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ++AIVT++AGTTRDV+E V V GVP+ L+DTAGI +T D VEKIGVE
Sbjct: 305 GKSSLLNHMLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTDKVEKIGVE 364
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS AD+I++ + + T+ED +LL K+ I+V+NK D P+
Sbjct: 365 RSRQAITQADLILLVLDQSEPLTTEDKQLLAATADKKR--------IIVLNKQDL-PARL 415
Query: 450 NEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ + D + A+ T G+ L+ I K+ + G N RQ L +
Sbjct: 416 DTAALLQLVDADEIIKTAIPTSDGMDALDERIAKLFFGGIENSQGTVMVSNARQIGLLRQ 475
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L + I +P+D ID+ A LG+I+GE +E+++ +F +FC+GK
Sbjct: 476 ASKSLDAVMGGIHAGMPIDLVQIDMTAAWDKLGEITGESAPDELITQLFSQFCLGK 531
>gi|354808355|ref|ZP_09041777.1| tRNA modification GTPase TrmE [Lactobacillus curvatus CRL 705]
gi|354513158|gb|EHE85183.1| tRNA modification GTPase TrmE [Lactobacillus curvatus CRL 705]
Length = 462
Score = 307 bits (787), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 182/478 (38%), Positives = 282/478 (58%), Gaps = 28/478 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TI AI T PPG A+ IVRLSG ++ I+ RV++ G + SH
Sbjct: 8 FDTITAIST----PPGEGAISIVRLSGDESLAIIKRVYR----------GKDLDQVASHT 53
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D + VVDEV+ M AP+++TREDV+E+ CHG V R+L+ + GA +
Sbjct: 54 INYGHIIDPKTDAVVDEVMVSVMRAPKTFTREDVIEINCHGGIVATNRILQLLMSYGARM 113
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DL+QAE+V LI AK+ A A+ + G + L+ ++R + +E
Sbjct: 114 AEPGEFTKRAFLNGRIDLTQAESVMDLIRAKTDRAMQVAVDQLDGSLTHLIKNLRQEILE 173
Query: 269 LLTEIEARLDFDD-EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
+L ++E +D+ + + + ++++K + + L+TA K+L+ GL AIVGRP
Sbjct: 174 VLAQVEVNIDYPEYDTDEMTTRILLEKAELVKARIGELLQTAQQGKVLREGLATAIVGRP 233
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN ++AIVT++AGTTRDV+E V V GVP+ L+DTAGI +T+D VEKIG
Sbjct: 234 NVGKSSLLNHLLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTEDKVEKIG 293
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS A AD+I++ ++ + T ED EL+ K+ I+++NK D
Sbjct: 294 VERSRAAITKADLILLVLNQSEPLTVEDRELITATTDKKR--------IIILNKTDLPNL 345
Query: 448 AS-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
NE + N+ ++ + T +T +G+ DLE I K+ + N RQ L
Sbjct: 346 LDLNELQTLVNA-DEVIQTSILTSEGVTDLEAQIAKLFFGGIENSQSTVMITNARQIGLL 404
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ +++L + S I +P+D ID+ + LG+I+G+ +E+++ +F +FC+GK
Sbjct: 405 NQAQQSLDEVISGIAAGMPVDLVQIDMTNCWDKLGEITGDSAPDELITELFSQFCLGK 462
>gi|313124784|ref|YP_004035043.1| tRNA modification GTPase mnme [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312281347|gb|ADQ62066.1| tRNA modification GTPase mnmE [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
Length = 461
Score = 307 bits (787), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 185/478 (38%), Positives = 283/478 (59%), Gaps = 29/478 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G G + IVR+SG AV IV R+FK G + SH +
Sbjct: 8 FDTIAAISTPLG--EGGISIVRVSGEDAVAIVNRLFK----------GKDLEKVPSHTIN 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+A MLAP+++T+ED+VE+ CHG V +L+ L GA +A
Sbjct: 56 YGHIVDPATGQVIDEVMASVMLAPKTFTKEDIVEINCHGGIVVTNDILQLLLANGARMAD 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V +I AK+ A A+ + GG + + ++R + +++L
Sbjct: 116 PGEFTKRAFVNGRIDLTQAESVMDIIRAKTDKARQVAVKQLSGGLLTEIRALRQEILDVL 175
Query: 271 TEIEARLDF---DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
+E +D+ D+E + ++ A+S ++ LETA ++L++GL+ AIVGRP
Sbjct: 176 ANVEVNIDYPEYDEE--EVTAQKMLACAEAVSGKIDRLLETAQEGQILRNGLKTAIVGRP 233
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN ++S++AIVT++AGTTRD +E V+V GVP+ L+DTAGI T+D VEKIG
Sbjct: 234 NVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAGIHHTEDQVEKIG 293
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS+ AD+I++ + T ED LL K+ I+V+NK D
Sbjct: 294 VERSKKAIAQADLILLLLDGSQELTEEDRRLLELTAGKKR--------IIVLNKTDLGQK 345
Query: 448 -ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ E K S ++ + T + + + +LE I K+ + + NQRQ L
Sbjct: 346 LTAAEIAK--ESGSEVISTSIMMKENLDELEALIKKLFFKGIENSNDQVLVTNQRQAGLL 403
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K+ L + S +E +P+D ID A +LG+I+G+ +E+++++F +FC+GK
Sbjct: 404 AKAKQQLADVASGLEAGMPVDLVQIDFTGAWESLGEITGDSAPDELINDLFSQFCLGK 461
>gi|390933667|ref|YP_006391172.1| tRNA modification GTPase mnmE [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389569168|gb|AFK85573.1| tRNA modification GTPase mnmE [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 458
Score = 307 bits (787), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 183/473 (38%), Positives = 279/473 (58%), Gaps = 21/473 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T IG G + I+R+SG A+ IV +FK + ++ SH V YG
Sbjct: 5 TIAAISTPIG--EGGISIIRISGSDAIKIVSGIFKSKRNVDLRN-------VKSHTVHYG 55
Query: 154 VVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+ D + + DEVL M +P +YT+EDVVE+ CHG + +R+L L+ GA LA+PG
Sbjct: 56 FIYDAENDEIYDEVLVNVMKSPHTYTKEDVVEINCHGGYIPSKRILELVLKNGARLAEPG 115
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGRLD+SQAE V +I +K+ + AL + G +T ++ + L+
Sbjct: 116 EFTKRAFLNGRLDISQAEAVIDIIRSKTDLSNKYALMQLNGSVKEKITKIKNDLVALIAH 175
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
I A +DF ++++ LN ++D I+ ++++ L+T+ ++++ GL AI+G+PNVGK
Sbjct: 176 IFALMDFPEEDVELLNDGELIDGINNSIREIDEILKTSEKGRIVREGLNTAIIGKPNVGK 235
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLNA RAIVT++ GTTRD+IE +++ G+P+ L+DTAGIR+TD+IVEKIGVERS
Sbjct: 236 SSLLNALLNENRAIVTDVPGTTRDIIEEHLSIKGIPINLIDTAGIRQTDEIVEKIGVERS 295
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
AD+II +D E+L I++ K ++ ++NKID PSA +
Sbjct: 296 REAIDKADLIIFVFDNSRPIEKDDYEILKLIENKK--------VLYILNKIDL-PSAIDM 346
Query: 452 WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKE 511
S +V +VT +G++ LE + +V L + N R + L++ K+
Sbjct: 347 DEVYKLSGGRYVRLSSVTKEGLETLENTVYNMV-LSDGLSRDEFLLTNMRHKDALIKAKD 405
Query: 512 ALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+L+ +IE L DF +IDL A LG I+GE +E++++ IF +FC+GK
Sbjct: 406 SLMSCLKTIEGGLTEDFVSIDLNSAIDHLGLITGETANEDLINEIFERFCVGK 458
>gi|194476819|ref|YP_002048998.1| tRNA modification GTPase [Paulinella chromatophora]
gi|171191826|gb|ACB42788.1| tRNA modification GTPase [Paulinella chromatophora]
Length = 406
Score = 307 bits (787), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 173/414 (41%), Positives = 256/414 (61%), Gaps = 11/414 (2%)
Query: 152 YGVVLDR-HGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG +++ +G +DE L + M APRS+T EDV+E QCHG VC++RVL + GA A
Sbjct: 3 YGYIVNPINGERIDEALLLIMKAPRSFTAEDVIEFQCHGGLVCVQRVLELVISEGARRAL 62
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RA L+GRLD+++AE + +LI A+S A+ A+ G+ GG + R + ++ L
Sbjct: 63 PGEFTQRAVLHGRLDITRAEAISELIGARSRRASQLAMVGLGGGVQKSILGFRERLLDQL 122
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
EIEAR+DF++ + P++ + ++ ++ Q++ + ++Q GL+IA+VGRPNVG
Sbjct: 123 AEIEARVDFEENILPVDECAIKREVQSIVQELIQLVVDGRCSAIVQRGLRIALVGRPNVG 182
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLN S+ ERAIVT+I GTTRD+IE + + GVP+TLLDTAGI+ T+D VEK+G+ER
Sbjct: 183 KSSLLNRLSRRERAIVTDIPGTTRDLIETEIILNGVPITLLDTAGIQVTEDKVEKVGIER 242
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S AD I++ V+GWT D+ LL I S+ +++V NK D + S+
Sbjct: 243 SREAIASADAIVLVFDLVEGWTLADAILLKEIPSD-------VTLLIVGNKADRYSNKSH 295
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
++ + + A+TG+G + T ++ G +I A+N RQC+
Sbjct: 296 SPIQLSDPLW-AMPVSAMTGEGEASMLTELLNRCGAGEIQE--INLALNARQCDLASSAA 352
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + + E+ LP+DF+TIDLR A LGQI+G+DISE L IF +FCIGK
Sbjct: 353 SILEQGLQTFEDGLPIDFFTIDLRQAIKFLGQITGDDISESTLDRIFSRFCIGK 406
>gi|220930844|ref|YP_002507753.1| tRNA modification GTPase TrmE [Clostridium cellulolyticum H10]
gi|220001172|gb|ACL77773.1| tRNA modification GTPase TrmE [Clostridium cellulolyticum H10]
Length = 460
Score = 307 bits (787), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 189/474 (39%), Positives = 276/474 (58%), Gaps = 22/474 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAA+ T G G +G++R+SG A D ++F+ K ++ S H V YG
Sbjct: 6 TIAALSTPYG--TGGIGVIRISGGQAFDTANKIFRSSKTIEEIHS---------HTVTYG 54
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D + +VVDEVL + M P ++TREDV+E+ CHG V + RVL + G AQPG
Sbjct: 55 KIVDPKLNDVVDEVLLLKMCKPNTFTREDVIEIHCHGGIVVVNRVLELIFKNGVRPAQPG 114
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQAE + LI++K+V ++ AA++ ++G S + S+R + LL
Sbjct: 115 EFTKRAFLNGRIDLSQAEAIIDLINSKTVESSKAAVSHLEGRLSLRLKSIREVLVGLLAH 174
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IE +D+ + ++ + V++ + + +++ T K+L+ G+ I I G+PNVGK
Sbjct: 175 IEVTVDYPEHDIEEITGENVLENLIKIKEELITLAGTFERGKILREGIDIVIAGKPNVGK 234
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLN S S +AIVT+I GTTRD+IE V + G+P ++DTAGIR T+D+VE IGV R+
Sbjct: 235 SSLLNQLSGSTKAIVTDIPGTTRDIIEEYVNIKGIPAKIIDTAGIRSTEDVVETIGVNRA 294
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
AD+II +SA G T ED ++L I+ NKKS +++INK D S
Sbjct: 295 YEAIESADLIIAVLSADTGVTEEDIQILKMIK-NKKS-------LILINKTDLVEKNSIS 346
Query: 452 WNKVGNSFNDHVFTCAVTGQ-GIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
K S D V +V GI++LETAI + I + N R + R
Sbjct: 347 KIKQQLSECDIVLEASVIKDVGIEELETAISGLFIKGDISSNNEVLLTNARHKYLVDRAI 406
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + +S E +PLD TID++ A ++G+I+GE I E VL NIF +FCIGK
Sbjct: 407 NDIEQALNSFETGMPLDMVTIDIKSCADSIGEITGESIDEAVLHNIFSRFCIGK 460
>gi|254558111|ref|YP_003064528.1| tRNA modification GTPase TrmE [Lactobacillus plantarum JDM1]
gi|254047038|gb|ACT63831.1| tRNA modification GTPase TrmE [Lactobacillus plantarum JDM1]
Length = 463
Score = 307 bits (787), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 185/479 (38%), Positives = 268/479 (55%), Gaps = 28/479 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG + I+R+SG ++V ++FK G R SH
Sbjct: 7 FDTIAAIST----PPGEGGISIIRISGDQTFNVVTQIFK----------GKDLSRVQSHT 52
Query: 150 VEYGVVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D + VDEV+A M AP++YTREDVVE+ CHG V +L+ L GA +
Sbjct: 53 INYGHIVDPDTHQEVDEVMATVMRAPKTYTREDVVEINCHGGLVATNEILQLILSHGARM 112
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGRLDLSQAE V LI AK+ + AL + G S L+ +R ++
Sbjct: 113 AEPGEFTKRAFLNGRLDLSQAEAVMDLIRAKTDKSMKVALNQLDGDLSKLIRHLRQDILD 172
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L ++E +D+ D + + ++ +K ++Q + L TA K+L+ GL AI+GR
Sbjct: 173 VLAQVEVNIDYPEYDAVETMTTKMLKEKATEVAQSINQLLATAKQGKVLREGLATAIIGR 232
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN ++AIVT++AGTTRDVIE V V GVP+ L+DTAGIR+T+D VEKI
Sbjct: 233 PNVGKSSLLNHLLHEDKAIVTDVAGTTRDVIEEYVNVRGVPLKLVDTAGIRDTEDKVEKI 292
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS AD++++ + T+ED ELL +K+ I+++NK D
Sbjct: 293 GVERSRKAIGAADLVLLVLDNSQPLTAEDRELLQETDQSKR--------IVILNKTDLPA 344
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCEQ 505
+D + + G+ LE I K+ I + V N R
Sbjct: 345 RLDQAELAQLVDLSDVLSMSVLEQSGVTQLEQRIAKMFFNEGIESSQNNVMVTNARHIGL 404
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + K+AL +++ + +P+D ID+ LGQI+G+ +E+L +F +FC+GK
Sbjct: 405 LNQAKQALQDVQTGLVAGMPVDLVQIDMTRCWEFLGQITGDSYEDELLDQLFSQFCLGK 463
>gi|424756259|ref|ZP_18184089.1| tRNA modification GTPase TrmE [Enterococcus faecalis R508]
gi|402408549|gb|EJV41010.1| tRNA modification GTPase TrmE [Enterococcus faecalis R508]
Length = 465
Score = 307 bits (787), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 188/480 (39%), Positives = 284/480 (59%), Gaps = 29/480 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVRLSG AV I +V++ K K PT H
Sbjct: 8 FDTIAAIST----PPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKV-------PT-HT 55
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D ++ ++DEV+ M AP+++TREDVVE+ CHG V + ++L+ L GA +
Sbjct: 56 IHYGHIVDPQNDQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLREGARM 115
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL + G S+L+ S+R + +
Sbjct: 116 AEPGEFTKRAFLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILN 175
Query: 269 LLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L ++E +D+ D++ L L+++K + ++ L TA K+L+ GL AI+GR
Sbjct: 176 TLAQVEVNIDYPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGR 235
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+DIVE+I
Sbjct: 236 PNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERI 295
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS +D+I++ ++ + T ED +LL + K+ ++++NK+D
Sbjct: 296 GVERSRKALADSDLILLVLNQSEKLTEEDRQLLEATKGLKR--------VILLNKMDLPT 347
Query: 447 SAS-NEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCE 504
NE ++ + + + + +V + G+ LE I + Q + N R
Sbjct: 348 KLDPNELQELVPA--EEILSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIA 405
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + +L + + IE +P+D ID+ LG+I G+ + +E+++ +F +FC+GK
Sbjct: 406 LLDQAALSLQEVINGIEAGMPVDLVQIDMTRCWNYLGEIVGDSVQDELITQLFSQFCLGK 465
>gi|255994565|ref|ZP_05427700.1| tRNA modification GTPase TrmE [Eubacterium saphenum ATCC 49989]
gi|255993278|gb|EEU03367.1| tRNA modification GTPase TrmE [Eubacterium saphenum ATCC 49989]
Length = 453
Score = 307 bits (787), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 169/473 (35%), Positives = 290/473 (61%), Gaps = 25/473 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+ GA+G++++SG + I+ +FK K++ +S W+ + + YG
Sbjct: 4 TIAAISTA---GYGAIGVIKISGNRSKKILEELFKNAGKQRIESD---KWQ--NKRLYYG 55
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ ++ V+DEV+AV M AP +YTREDVVE+ HG+ VC RR+L A ++ GA LA+PGE
Sbjct: 56 TI-EQDNRVLDEVMAVYMKAPHTYTREDVVEIYTHGNAVCQRRILDAVIDEGAELAEPGE 114
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT AFLNGR+DL+QAE + ++I+AKS A D AL G+ G + + R + E+L E+
Sbjct: 115 FTKLAFLNGRIDLTQAEAIIEMINAKSEEAFDLALQGLAGQNERSIGNARVRLQEILVEM 174
Query: 274 EARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
+D+ D+++ +N ++ I + +++ ++ ++ + G+++AI+G+PN GKS
Sbjct: 175 AVNIDYPDEDIEEINYQKTIESIEDVINELDEVIDITRKRRVYRDGIRVAILGKPNAGKS 234
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLN +RAI+++I GTTRDVIE + + G+P+TL+DTAGIRE+D+++EK G++RS
Sbjct: 235 SLLNELLMEDRAIISDIEGTTRDVIEEQILLSGIPITLIDTAGIRESDNVIEKEGIDRSY 294
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
A ADV++ + + G ED ++ R++++ +++ +K D SA N+
Sbjct: 295 KAANEADVVVYLIDSTKGPDGEDENVIKRLRAD--------SLVVCFSKSDLPMSAKNKE 346
Query: 453 NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQI-PAGGRRWAVNQRQCEQLMRTKE 511
NK F+ + G+++L++ + KI + G+R R + ++ K+
Sbjct: 347 NK--GLFDKSIDISIRNKSGMEELKSELRKIAEEKNVAKTEGKR----DRTVYEAIKAKK 400
Query: 512 ALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+L K ++++ L LDF +D+++A LG I+G+ SEEV++ +F +FC+GK
Sbjct: 401 SLNEAKKALKKGLSLDFAEVDVKNAYAYLGNITGDTASEEVINKVFERFCLGK 453
>gi|284049397|ref|YP_003399736.1| tRNA modification GTPase TrmE [Acidaminococcus fermentans DSM
20731]
gi|283953618|gb|ADB48421.1| tRNA modification GTPase TrmE [Acidaminococcus fermentans DSM
20731]
Length = 457
Score = 307 bits (787), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 180/473 (38%), Positives = 274/473 (57%), Gaps = 20/473 (4%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
TI+AI T++G G++G++R+SGP ++ IV R F ++ R + + Y
Sbjct: 4 DTISAIATALG--VGSIGVIRVSGPDSLAIVRRFFAGREQ---------PGRENARKLLY 52
Query: 153 GVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
G +LD G VVDEVLAV M P SYT EDV E+QCHG L+ +LR +AGA A+PG
Sbjct: 53 GHILDGKGQVVDEVLAVYMPGPHSYTGEDVCEIQCHGGREALQEILRLTFQAGARPAEPG 112
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGRLDL++AE+V +I+A+S A AA G +GG S V ++R +L+ +
Sbjct: 113 EFTKRAFLNGRLDLAEAESVMDIINARSRQALAAANRGHEGGLSRQVKALRKTLRDLVVQ 172
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
+EA +D+ +D++ + + + + + VE + ++L+ GL+ AIVGRPNVGK
Sbjct: 173 LEACIDYPEDDIEEVTYDRTVSTLEEGKKAVETLVRRGTAGRILREGLRTAIVGRPNVGK 232
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLN+ +++RAIV+ I GTTRD+IE +T+ G+P+ L DTAG+R+T D+VEKIGVERS
Sbjct: 233 SSLLNSLLQADRAIVSNIPGTTRDIIEEQMTIGGIPLVLTDTAGLRDTSDLVEKIGVERS 292
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
A A + ++ + ED +LL ++ KK ++++NK D + E
Sbjct: 293 RAALEDAQLALVVLDGSQPLDPEDRQLLESLRDRKK--------LILVNKADLPLALDVE 344
Query: 452 WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKE 511
+ D + G+G++ +E + V + N RQ L + +
Sbjct: 345 GLRKTYGEKDVLVLSVKEGKGLEQVEQWLRDFVYGEGSDSESSSMTQNARQQNLLEKALQ 404
Query: 512 ALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+L + + LP D TIDL A LG+I+GED+ +E++ IF +FC+GK
Sbjct: 405 SLEDALAGARQHLPYDCLTIDLTQALHDLGEITGEDVPDEIIDEIFAQFCVGK 457
>gi|258509933|ref|YP_003172684.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus GG]
gi|385829548|ref|YP_005867320.1| tRNA modification GTPase [Lactobacillus rhamnosus GG]
gi|421770083|ref|ZP_16206785.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Lactobacillus
rhamnosus LRHMDP2]
gi|421771486|ref|ZP_16208145.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Lactobacillus
rhamnosus LRHMDP3]
gi|257149860|emb|CAR88833.1| tRNA modification GTPase MnmE [Lactobacillus rhamnosus GG]
gi|259651193|dbj|BAI43355.1| tRNA modification GTPase [Lactobacillus rhamnosus GG]
gi|411182891|gb|EKS50034.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Lactobacillus
rhamnosus LRHMDP2]
gi|411185075|gb|EKS52204.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Lactobacillus
rhamnosus LRHMDP3]
Length = 462
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 185/478 (38%), Positives = 277/478 (57%), Gaps = 28/478 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
+ TIAAI T PPG A+ IVRLSG AV +VFK G + SH
Sbjct: 8 YDTIAAIST----PPGEGAISIVRLSGETAVATANKVFK----------GKDLTQVKSHT 53
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D G+++DEV+ MLAP+++TREDVVE+ CHG V R+L+ L GA +
Sbjct: 54 IHYGHIVDPETGDLIDEVMVSVMLAPKTFTREDVVEINCHGGIVATNRILQLLLGEGARM 113
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DL++AE+V LI AK+ A A+ + G L+ +R + +E
Sbjct: 114 AEPGEFTKRAFLNGRIDLTEAESVMDLIRAKTDRAMQVAVNQLDGNLHHLIKQLRQEILE 173
Query: 269 LLTEIEARLDFDD-EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
+L ++E +D+ + + + ++++K + + +E L TA+ K+L+ GL AIVGRP
Sbjct: 174 VLAQVEVNIDYPEYDTDEMTTKMLLEKAQTVKKAIEQLLTTASQGKVLREGLATAIVGRP 233
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN ++AIVT++AGTTRDV+E V V GVP+ L+DTAGI +T D VEKIG
Sbjct: 234 NVGKSSLLNHMLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTDKVEKIG 293
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD+I++ + + T+ED +LL K+ I+V+NK D P+
Sbjct: 294 VERSRQAITQADLILLVLDQSEPLTTEDKQLLAATADKKR--------IIVLNKQDL-PA 344
Query: 448 ASNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ + D + A+ T G+ L+ I K+ + G N RQ L
Sbjct: 345 RLDTAALLQLVDADEIIKTAIPTSDGMDALDERIAKLFFGGIENSQGTVMVSNARQIGLL 404
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++L + + I +P+D ID+ A LG+I+GE +E+++ +F +FC+GK
Sbjct: 405 RQASKSLDAVMAGIHAGMPIDLVQIDMTAAWDKLGEITGESAPDELITQLFSQFCLGK 462
>gi|418071417|ref|ZP_12708691.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus R0011]
gi|357538911|gb|EHJ22931.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus R0011]
Length = 462
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 184/476 (38%), Positives = 275/476 (57%), Gaps = 24/476 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
+ TIAAI T G GA+ IVRLSG AV +VFK G + SH +
Sbjct: 8 YDTIAAISTPTG--EGAISIVRLSGETAVATANKVFK----------GKDLTQVKSHTIH 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G+++DEV+ MLAP+++TREDVVE+ CHG V R+L+ L GA +A+
Sbjct: 56 YGHIVDPETGDLIDEVMVSVMLAPKTFTREDVVEINCHGGIVATNRILQLLLGEGARMAE 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL++AE+V LI AK+ A A+ + G L+ +R + +E+L
Sbjct: 116 PGEFTKRAFLNGRIDLTEAESVMDLIRAKTDRAMQVAVNQLDGNLHHLIKQLRQEILEVL 175
Query: 271 TEIEARLDFDD-EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ + + + ++++K + + +E L TA+ K+L+ GL AIVGRPNV
Sbjct: 176 AQVEVNIDYPEYDTDEMTTKMLLEKAQTVKKAIEQLLTTASQGKVLREGLATAIVGRPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ++AIVT++AGTTRDV+E V V GVP+ L+DTAGI +T D VEKIGVE
Sbjct: 236 GKSSLLNHMLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTDKVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS AD+I++ + + T+ED +LL K+ I+V+NK D P+
Sbjct: 296 RSRQAITQADLILLVLDQSEPLTTEDKQLLAATADKKR--------IIVLNKQDL-PARL 346
Query: 450 NEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ + D + A+ T G+ L+ I K+ + G N RQ L +
Sbjct: 347 DTAALLQLVDADEIIKTAIPTSDGMDALDERIAKLFFGGIENSQGTVMVSNARQIGLLRQ 406
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L + I +P+D ID+ A LG+I+GE +E+++ +F +FC+GK
Sbjct: 407 ASKSLDAVMGGIHAGMPIDLVQIDMTAAWDKLGEITGESAPDELITQLFSQFCLGK 462
>gi|257417403|ref|ZP_05594397.1| tRNA modification GTPase [Enterococcus faecalis ARO1/DG]
gi|257159231|gb|EEU89191.1| tRNA modification GTPase [Enterococcus faecalis ARO1/DG]
Length = 465
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 188/480 (39%), Positives = 284/480 (59%), Gaps = 29/480 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVRLSG AV I +V++ K K PT H
Sbjct: 8 FDTIAAIST----PPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKV-------PT-HT 55
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D ++ ++DEV+ M AP+++TREDVVE+ CHG V + ++L+ L GA +
Sbjct: 56 IHYGHIVDPQNDQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLREGARM 115
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL + G S+L+ S+R + +
Sbjct: 116 AEPGEFTKRAFLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILN 175
Query: 269 LLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L ++E +D+ D++ L L+++K + ++ L TA K+L+ GL AI+GR
Sbjct: 176 TLAQVEVNIDYPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGR 235
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+DIVE+I
Sbjct: 236 PNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERI 295
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS +D+I++ ++ + T ED +LL + K+ ++++NK+D
Sbjct: 296 GVERSRKALADSDLILLVLNQSEKLTEEDRQLLEATKGLKR--------VILLNKMDLPT 347
Query: 447 SAS-NEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCE 504
NE ++ + + + + +V + G+ LE I + Q + N R
Sbjct: 348 KLDPNELQELVPA--EEILSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIA 405
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + +L + + IE +P+D ID+ LG+I G+ + +E+++ +F +FC+GK
Sbjct: 406 LLDQAALSLQEVINGIEAGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465
>gi|260437683|ref|ZP_05791499.1| tRNA modification GTPase TrmE [Butyrivibrio crossotus DSM 2876]
gi|292809909|gb|EFF69114.1| tRNA modification GTPase TrmE [Butyrivibrio crossotus DSM 2876]
Length = 456
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 181/473 (38%), Positives = 276/473 (58%), Gaps = 22/473 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T +G +GI+R+SG A ++ ++F P K KKK S SH + YG
Sbjct: 4 TIAAIATGMGS---GIGIIRISGEEAFSVIDKIFVPKKSKKKMS------EVKSHTIHYG 54
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
++ + +VDEVL + M AP +YT+ED +E+ CHG +++VL A L++GA A+PGE
Sbjct: 55 NIV-FNNEIVDEVLVMVMAAPNTYTKEDTIEINCHGGSFVMKKVLEAVLKSGARPAEPGE 113
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGR+DLSQAE V +I++K+ A ++ + G S + ++RA+ I + I
Sbjct: 114 FTKRAFLNGRIDLSQAEAVIDIINSKNKYALKNSINLLNGKLSEQIGNLRAEIIHNVAFI 173
Query: 274 EARLDFDDEMPPLNL-NLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
EA LD + + N + + + + + E L T + KL G+ I+G+PN GKS
Sbjct: 174 EAALDDPEHISLDNFGDKLENYVDKWVKTAEKLLITVDNGKLFTQGINTVILGKPNAGKS 233
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
S+LN S ERAIVT+I GTTRD+IE + + G+ + L+DTAGIR T+DIVE IGV +++
Sbjct: 234 SILNILSGRERAIVTDIEGTTRDIIEEQINLNGITLNLIDTAGIRNTEDIVENIGVNKAK 293
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
A A AD+I+ V + D E+L I++NK ++++NK D P +
Sbjct: 294 ATAEDADLIMYVVDSSRKLDENDYEILKLIKNNK--------AVVLLNKSDLEPVIT--V 343
Query: 453 NKVGNSFNDHVF-TCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKE 511
+K+ N+ VF A G+++L I+ + +I + N+R L E
Sbjct: 344 DKMKELTNNRVFLVSAKENTGLEELTDYIVDMFTEGKIDFNDEVYISNERDKAALDNALE 403
Query: 512 ALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+L +K SI E +P DF+TIDL +A LG+I GE + +++++ IF KFC+GK
Sbjct: 404 SLRLVKRSINEGMPEDFYTIDLLNAYEELGKIIGESVEDDLVNEIFSKFCMGK 456
>gi|29377753|ref|NP_816907.1| tRNA modification GTPase TrmE [Enterococcus faecalis V583]
gi|227555662|ref|ZP_03985709.1| tRNA modification GTPase TrmE [Enterococcus faecalis HH22]
gi|257418862|ref|ZP_05595856.1| tRNA modification GTPase [Enterococcus faecalis T11]
gi|422712061|ref|ZP_16768839.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0309A]
gi|422715521|ref|ZP_16772239.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0309B]
gi|46577423|sp|Q820T0.1|MNME_ENTFA RecName: Full=tRNA modification GTPase MnmE
gi|29345221|gb|AAO82977.1| tRNA modification GTPase TrmE [Enterococcus faecalis V583]
gi|227175215|gb|EEI56187.1| tRNA modification GTPase TrmE [Enterococcus faecalis HH22]
gi|257160690|gb|EEU90650.1| tRNA modification GTPase [Enterococcus faecalis T11]
gi|315576168|gb|EFU88359.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0309B]
gi|315582978|gb|EFU95169.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0309A]
Length = 465
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 188/480 (39%), Positives = 284/480 (59%), Gaps = 29/480 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVRLSG AV I +V++ K K PT H
Sbjct: 8 FDTIAAIST----PPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKV-------PT-HT 55
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D ++ ++DEV+ M AP+++TREDVVE+ CHG V + ++L+ L GA +
Sbjct: 56 IHYGHIVDPQNDQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLREGARM 115
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL + G S+L+ S+R + +
Sbjct: 116 AEPGEFTKRAFLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSTLIRSLRQEILN 175
Query: 269 LLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L ++E +D+ D++ L L+++K + ++ L TA K+L+ GL AI+GR
Sbjct: 176 TLAQVEVNIDYPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGR 235
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+DIVE+I
Sbjct: 236 PNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERI 295
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS +D+I++ ++ + T ED +LL + K+ ++++NK+D
Sbjct: 296 GVERSRKALADSDLILLVLNQSEELTEEDRQLLEATKGLKR--------VILLNKMDLPT 347
Query: 447 SAS-NEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCE 504
NE ++ + + + + +V + G+ LE I + Q + N R
Sbjct: 348 KLDPNELQELVPA--EEILSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIA 405
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + +L + + IE +P+D ID+ LG+I G+ + +E+++ +F +FC+GK
Sbjct: 406 LLDQAALSLQEVINGIEAGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465
>gi|384517085|ref|YP_005704390.1| tRNA modification GTPase TrmE [Enterococcus faecalis 62]
gi|397701431|ref|YP_006539219.1| tRNA modification GTPase TrmE [Enterococcus faecalis D32]
gi|323479218|gb|ADX78657.1| tRNA modification GTPase TrmE [Enterococcus faecalis 62]
gi|397338070|gb|AFO45742.1| tRNA modification GTPase TrmE [Enterococcus faecalis D32]
Length = 460
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 188/480 (39%), Positives = 284/480 (59%), Gaps = 29/480 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVRLSG AV I +V++ K K PT H
Sbjct: 3 FDTIAAIST----PPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKV-------PT-HT 50
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D ++ ++DEV+ M AP+++TREDVVE+ CHG V + ++L+ L GA +
Sbjct: 51 IHYGHIVDPQNDQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLREGARM 110
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL + G S+L+ S+R + +
Sbjct: 111 AEPGEFTKRAFLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILN 170
Query: 269 LLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L ++E +D+ D++ L L+++K + ++ L TA K+L+ GL AI+GR
Sbjct: 171 TLAQVEVNIDYPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGR 230
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+DIVE+I
Sbjct: 231 PNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERI 290
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS +D+I++ ++ + T ED +LL + K+ ++++NK+D
Sbjct: 291 GVERSRKALADSDLILLVLNQSEELTEEDRQLLEATKGLKR--------VILLNKMDLPT 342
Query: 447 SAS-NEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCE 504
NE ++ + + + + +V + G+ LE I + Q + N R
Sbjct: 343 KLDPNELQELVPA--EEILSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIA 400
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + +L + + IE +P+D ID+ LG+I G+ + +E+++ +F +FC+GK
Sbjct: 401 LLDQAALSLQEVINGIEAGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 460
>gi|42519903|ref|NP_965833.1| tRNA modification GTPase TrmE [Lactobacillus johnsonii NCC 533]
gi|417838387|ref|ZP_12484625.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Lactobacillus
johnsonii pf01]
gi|81832151|sp|Q74H94.1|MNME_LACJO RecName: Full=tRNA modification GTPase MnmE
gi|41584193|gb|AAS09799.1| probable tRNA modification GTPase TrmE [Lactobacillus johnsonii NCC
533]
gi|338761930|gb|EGP13199.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Lactobacillus
johnsonii pf01]
Length = 461
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 181/475 (38%), Positives = 282/475 (59%), Gaps = 23/475 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T IG G + IVRLSG AV I ++FK G+ + SH +
Sbjct: 8 FDTIAAISTPIG--EGGISIVRLSGEDAVAIANKLFK----------GADLTQVPSHTIH 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + +VVDE + + AP+++TRED+VE+ CHG + +L+ L GA +A
Sbjct: 56 YGHIVDPKTKDVVDETMVSVLRAPKTFTREDMVEINCHGGMIVTNDILQLLLANGARMAD 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V ++ AK+ + A+ + GG + ++R + ++ +
Sbjct: 116 PGEFTKRAFMNGRIDLTQAESVMDIVRAKTDKSRQVAMTQLAGGLLDKIRTMRQELLDTM 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
E +D+ + +M L + K +S+ ++ L+TA K++++GL AIVGRPNV
Sbjct: 176 AHEEVNIDYPEYDMDDLTSQEMKKKAEEVSKQIDQLLKTAQEGKIIRNGLATAIVGRPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ++ ++AIVT+IAGTTRD +E V+V GVP+ L+DTAGI T+D VEKIGVE
Sbjct: 236 GKSSLLNYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTEDKVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ + A T ED LLN + +NKK I+++NK D S
Sbjct: 296 RSKKAIAEADLVLLLLDASQDLTDEDKNLLN-LTANKKR-------IIILNKQDLGTKIS 347
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
E + N + T + + + LE AI ++ + + NQRQ L +
Sbjct: 348 QEMIREITD-NPIIVTSILKQENMAALENAIEQLFFSGIENSQNQILVTNQRQAGLLAKA 406
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K++L + + I++ +PLD IDL++A LG+I+GE +E+++ +F +FC+GK
Sbjct: 407 KQSLEDVVNGIDDAMPLDLVQIDLKNAWDTLGEITGESAPDELITQLFSQFCLGK 461
>gi|229550722|ref|ZP_04439447.1| tRNA modification GTPase TrmE [Enterococcus faecalis ATCC 29200]
gi|229304155|gb|EEN70151.1| tRNA modification GTPase TrmE [Enterococcus faecalis ATCC 29200]
Length = 465
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 188/480 (39%), Positives = 284/480 (59%), Gaps = 29/480 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVRLSG AV I +V++ K K PT H
Sbjct: 8 FDTIAAIST----PPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKV-------PT-HT 55
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D ++ ++DEV+ M AP+++TREDVVE+ CHG V + ++L+ L GA +
Sbjct: 56 IHYGHIVDPQNDQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLREGARM 115
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL + G S+L+ S+R + +
Sbjct: 116 AEPGEFTKRAFLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILN 175
Query: 269 LLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L ++E +D+ D++ L L+++K + ++ L TA K+L+ GL AI+GR
Sbjct: 176 TLAQVEVNIDYPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGR 235
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+DIVE+I
Sbjct: 236 PNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERI 295
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS +D+I++ ++ + T ED +LL + K+ ++++NK+D
Sbjct: 296 GVERSRKALADSDLILLVLNQSEELTEEDRQLLEATKGLKR--------VILLNKMDLPT 347
Query: 447 SAS-NEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCE 504
NE ++ + + + + +V + G+ LE I + Q + N R
Sbjct: 348 KLDPNELQELVPA--EEILSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIA 405
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + +L + + IE +P+D ID+ LG+I G+ + +E+++ +F +FC+GK
Sbjct: 406 LLDQAAISLQEVINGIEAGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465
>gi|241889088|ref|ZP_04776392.1| tRNA modification GTPase TrmE [Gemella haemolysans ATCC 10379]
gi|241864337|gb|EER68715.1| tRNA modification GTPase TrmE [Gemella haemolysans ATCC 10379]
Length = 460
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 184/476 (38%), Positives = 283/476 (59%), Gaps = 24/476 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI AI T++G GA+GIVRLSG A I ++ + K K +S S H + YG
Sbjct: 4 TICAISTALG--EGAIGIVRLSGDEAFSIAEKIVRLPKGKTVESLAS-------HTINYG 54
Query: 154 VVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
V+D N ++E++ V M+ PR+YT EDV+E+ CHG + +++VL CLE GA +A+PG
Sbjct: 55 NVVDPATNEKIEEIMLVKMVGPRTYTTEDVIEINCHGGIITIQKVLALCLEHGARMAEPG 114
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DL+QAE V I +K+ A+ A +QG S+L+ +RA+ +++LT
Sbjct: 115 EFTKRAFLNGRIDLTQAEAVIDFIKSKTDEASQIANNQMQGRLSTLIKRLRAEILDILTV 174
Query: 273 IEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+E +D+ D++ +++K ++ +E+ LET+ K+++ G+ AI+GRPNVG
Sbjct: 175 VEVNIDYPEYDDLEIETTKTILEKSTSIRNSLESLLETSKQGKIIKEGINTAIIGRPNVG 234
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLN + +AIVT+IAGTTRDV+E V + GVP+ L+DTAGIRETDDIVE+IGV+R
Sbjct: 235 KSSLLNNLLQENKAIVTDIAGTTRDVLEEYVNIKGVPIKLIDTAGIRETDDIVEQIGVKR 294
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS- 449
S+ AD+++ +++ + T +D ELL K TE T I+++NK+D
Sbjct: 295 SKEALEKADLVLFLLNSSEELTEDDKELL-------KLTEGKTT-IVILNKLDLETKIDI 346
Query: 450 NEWNKVGNSFNDHVF-TCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E K+ ++N + T T +GI +LE I + + N RQ + R
Sbjct: 347 AEVEKL--AYNHPIIKTSMTTYKGIDELEKNIRDLFFGGAARPKDATYLSNTRQINLIQR 404
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+L + E L +D ID + LG++ GE+ +E+++ +F +FC+GK
Sbjct: 405 ALTSLNDAIGAAEMGLEVDMVLIDYTNTFNLLGEVIGENSGDELINELFSRFCLGK 460
>gi|255657633|ref|ZP_05403042.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-23m63]
Length = 459
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 177/474 (37%), Positives = 272/474 (57%), Gaps = 23/474 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+ G G +GI+R+SG A+ + +FK + SG + YG
Sbjct: 6 TIAAIATAPG--EGGIGILRISGERALKVAEEIFKSM-------SGKSIEEYNKRTLIYG 56
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
++D+ N++DEVL M P SYT EDV+E+ CHG + ++++L L LA+ GE
Sbjct: 57 NIVDKE-NIIDEVLLAYMKGPNSYTGEDVIEINCHGGFISVKKILELILSKDVRLAEAGE 115
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGR+DLSQAE V +I AK+ A + A ++G S + +R K E+L +
Sbjct: 116 FTKRAFLNGRIDLSQAEAVIDVIKAKTDIAHEVAQNQLEGSLSKKIRELRDKVTEILAHV 175
Query: 274 EARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
E +D+ ++++ + + DK + ++++ +TA K+L+ GL+ IVG+PNVGKS
Sbjct: 176 EVAIDYPEEDIEHITYQTLKDKTDELKKEIKKLYDTAESGKILREGLKTVIVGKPNVGKS 235
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLN+ RAIVT+I GTTRDVIE V + G+P+ ++DTAGIR+TDDIVEKIGVERS+
Sbjct: 236 SLLNSILGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDIVEKIGVERSK 295
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE- 451
AD+I+M + A + ED E+L +++ + I+++NK D E
Sbjct: 296 ESFTSADLIVMVLDASRKLSEEDIEILEKLKDKQ--------TIVLLNKNDLKQEIEEEK 347
Query: 452 -WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
V N N + A+ +GI++L+ I +V I N R + L +
Sbjct: 348 ILKYVEN--NSIIKISALQQEGIEELQDKIESMVYKGSIKNNSSLVVTNSRHKDALSKAY 405
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++ ++E+ +P DF +DL++ LG I+G+ ++E++L NIF FCIGK
Sbjct: 406 KSATDALIALEQSMPFDFVEVDLKNIWDYLGYINGDTVTEDLLDNIFHNFCIGK 459
>gi|229547152|ref|ZP_04435877.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1322]
gi|255971528|ref|ZP_05422114.1| tRNA modification GTPase [Enterococcus faecalis T1]
gi|255974478|ref|ZP_05425064.1| tRNA modification GTPase [Enterococcus faecalis T2]
gi|256761833|ref|ZP_05502413.1| tRNA modification GTPase [Enterococcus faecalis T3]
gi|256854960|ref|ZP_05560321.1| tRNA modification GTPase mnmE [Enterococcus faecalis T8]
gi|256957036|ref|ZP_05561207.1| tRNA modification GTPase [Enterococcus faecalis DS5]
gi|256960899|ref|ZP_05565070.1| tRNA modification GTPase [Enterococcus faecalis Merz96]
gi|256963961|ref|ZP_05568132.1| tRNA modification GTPase [Enterococcus faecalis HIP11704]
gi|257078713|ref|ZP_05573074.1| tRNA modification GTPase [Enterococcus faecalis JH1]
gi|257081326|ref|ZP_05575687.1| tRNA modification GTPase [Enterococcus faecalis E1Sol]
gi|257083984|ref|ZP_05578345.1| tRNA modification GTPase [Enterococcus faecalis Fly1]
gi|257087814|ref|ZP_05582175.1| tRNA modification GTPase [Enterococcus faecalis D6]
gi|257088459|ref|ZP_05582820.1| tRNA modification GTPase [Enterococcus faecalis CH188]
gi|257421323|ref|ZP_05598313.1| tRNA modification GTPase trmE [Enterococcus faecalis X98]
gi|293384792|ref|ZP_06630639.1| tRNA modification GTPase TrmE [Enterococcus faecalis R712]
gi|293388148|ref|ZP_06632672.1| tRNA modification GTPase TrmE [Enterococcus faecalis S613]
gi|294781227|ref|ZP_06746574.1| tRNA modification GTPase TrmE [Enterococcus faecalis PC1.1]
gi|300861676|ref|ZP_07107760.1| tRNA modification GTPase TrmE [Enterococcus faecalis TUSoD Ef11]
gi|307268891|ref|ZP_07550256.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX4248]
gi|307273989|ref|ZP_07555199.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0855]
gi|307277334|ref|ZP_07558432.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX2134]
gi|307284016|ref|ZP_07564186.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0860]
gi|307286637|ref|ZP_07566727.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0109]
gi|307296566|ref|ZP_07576387.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0411]
gi|312901323|ref|ZP_07760604.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0470]
gi|312902969|ref|ZP_07762158.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0635]
gi|312908837|ref|ZP_07767776.1| tRNA modification GTPase TrmE [Enterococcus faecalis DAPTO 512]
gi|312952943|ref|ZP_07771799.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0102]
gi|312979521|ref|ZP_07791203.1| tRNA modification GTPase TrmE [Enterococcus faecalis DAPTO 516]
gi|384514521|ref|YP_005709614.1| tRNA modification GTPase TrmE [Enterococcus faecalis OG1RF]
gi|421513163|ref|ZP_15959947.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Enterococcus
faecalis ATCC 29212]
gi|422685173|ref|ZP_16743397.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX4000]
gi|422687174|ref|ZP_16745359.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0630]
gi|422692602|ref|ZP_16750618.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0031]
gi|422694288|ref|ZP_16752281.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX4244]
gi|422697330|ref|ZP_16755275.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1346]
gi|422699422|ref|ZP_16757287.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1342]
gi|422702847|ref|ZP_16760676.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1302]
gi|422707543|ref|ZP_16765236.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0043]
gi|422709165|ref|ZP_16766677.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0027]
gi|422719221|ref|ZP_16775869.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0017]
gi|422723349|ref|ZP_16779887.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX2137]
gi|422726345|ref|ZP_16782793.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0312]
gi|422728161|ref|ZP_16784579.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0012]
gi|422730532|ref|ZP_16786921.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0645]
gi|422741729|ref|ZP_16795752.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX2141]
gi|422867800|ref|ZP_16914368.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1467]
gi|424672348|ref|ZP_18109315.1| tRNA modification GTPase TrmE [Enterococcus faecalis 599]
gi|428768393|ref|YP_007154504.1| tRNA modification GTPase [Enterococcus faecalis str. Symbioflor 1]
gi|430362698|ref|ZP_19427175.1| tRNA modification GTPase TrmE [Enterococcus faecalis OG1X]
gi|430372480|ref|ZP_19429824.1| hypothetical protein EFM7_2611 [Enterococcus faecalis M7]
gi|229307734|gb|EEN73721.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1322]
gi|255962546|gb|EET95022.1| tRNA modification GTPase [Enterococcus faecalis T1]
gi|255967350|gb|EET97972.1| tRNA modification GTPase [Enterococcus faecalis T2]
gi|256683084|gb|EEU22779.1| tRNA modification GTPase [Enterococcus faecalis T3]
gi|256709473|gb|EEU24520.1| tRNA modification GTPase mnmE [Enterococcus faecalis T8]
gi|256947532|gb|EEU64164.1| tRNA modification GTPase [Enterococcus faecalis DS5]
gi|256951395|gb|EEU68027.1| tRNA modification GTPase [Enterococcus faecalis Merz96]
gi|256954457|gb|EEU71089.1| tRNA modification GTPase [Enterococcus faecalis HIP11704]
gi|256986743|gb|EEU74045.1| tRNA modification GTPase [Enterococcus faecalis JH1]
gi|256989356|gb|EEU76658.1| tRNA modification GTPase [Enterococcus faecalis E1Sol]
gi|256992014|gb|EEU79316.1| tRNA modification GTPase [Enterococcus faecalis Fly1]
gi|256995844|gb|EEU83146.1| tRNA modification GTPase [Enterococcus faecalis D6]
gi|256997271|gb|EEU83791.1| tRNA modification GTPase [Enterococcus faecalis CH188]
gi|257163147|gb|EEU93107.1| tRNA modification GTPase trmE [Enterococcus faecalis X98]
gi|291077923|gb|EFE15287.1| tRNA modification GTPase TrmE [Enterococcus faecalis R712]
gi|291082456|gb|EFE19419.1| tRNA modification GTPase TrmE [Enterococcus faecalis S613]
gi|294451690|gb|EFG20145.1| tRNA modification GTPase TrmE [Enterococcus faecalis PC1.1]
gi|295112327|emb|CBL30964.1| tRNA modification GTPase trmE [Enterococcus sp. 7L76]
gi|300849137|gb|EFK76890.1| tRNA modification GTPase TrmE [Enterococcus faecalis TUSoD Ef11]
gi|306495993|gb|EFM65580.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0411]
gi|306502266|gb|EFM71548.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0109]
gi|306503387|gb|EFM72636.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0860]
gi|306505968|gb|EFM75140.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX2134]
gi|306509297|gb|EFM78357.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0855]
gi|306514807|gb|EFM83357.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX4248]
gi|310625275|gb|EFQ08558.1| tRNA modification GTPase TrmE [Enterococcus faecalis DAPTO 512]
gi|310629084|gb|EFQ12367.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0102]
gi|310633637|gb|EFQ16920.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0635]
gi|311287703|gb|EFQ66259.1| tRNA modification GTPase TrmE [Enterococcus faecalis DAPTO 516]
gi|311291556|gb|EFQ70112.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0470]
gi|315026593|gb|EFT38525.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX2137]
gi|315030087|gb|EFT42019.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX4000]
gi|315033580|gb|EFT45512.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0017]
gi|315036245|gb|EFT48177.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0027]
gi|315143559|gb|EFT87575.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX2141]
gi|315148303|gb|EFT92319.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX4244]
gi|315151268|gb|EFT95284.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0012]
gi|315152698|gb|EFT96714.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0031]
gi|315155022|gb|EFT99038.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0043]
gi|315158703|gb|EFU02720.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0312]
gi|315163425|gb|EFU07442.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0645]
gi|315165648|gb|EFU09665.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1302]
gi|315172073|gb|EFU16090.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1342]
gi|315174206|gb|EFU18223.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1346]
gi|315579747|gb|EFU91938.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0630]
gi|327536410|gb|AEA95244.1| tRNA modification GTPase TrmE [Enterococcus faecalis OG1RF]
gi|329577012|gb|EGG58487.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1467]
gi|401673734|gb|EJS80108.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Enterococcus
faecalis ATCC 29212]
gi|402356002|gb|EJU90747.1| tRNA modification GTPase TrmE [Enterococcus faecalis 599]
gi|427186566|emb|CCO73790.1| tRNA modification GTPase [Enterococcus faecalis str. Symbioflor 1]
gi|429511969|gb|ELA01589.1| tRNA modification GTPase TrmE [Enterococcus faecalis OG1X]
gi|429514657|gb|ELA04195.1| hypothetical protein EFM7_2611 [Enterococcus faecalis M7]
Length = 465
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 188/480 (39%), Positives = 284/480 (59%), Gaps = 29/480 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVRLSG AV I +V++ K K PT H
Sbjct: 8 FDTIAAIST----PPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKV-------PT-HT 55
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D ++ ++DEV+ M AP+++TREDVVE+ CHG V + ++L+ L GA +
Sbjct: 56 IHYGHIVDPQNDQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLREGARM 115
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL + G S+L+ S+R + +
Sbjct: 116 AEPGEFTKRAFLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILN 175
Query: 269 LLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L ++E +D+ D++ L L+++K + ++ L TA K+L+ GL AI+GR
Sbjct: 176 TLAQVEVNIDYPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGR 235
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+DIVE+I
Sbjct: 236 PNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERI 295
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS +D+I++ ++ + T ED +LL + K+ ++++NK+D
Sbjct: 296 GVERSRKALADSDLILLVLNQSEELTEEDRQLLEATKGLKR--------VILLNKMDLPT 347
Query: 447 SAS-NEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCE 504
NE ++ + + + + +V + G+ LE I + Q + N R
Sbjct: 348 KLDPNELQELVPA--EEILSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIA 405
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + +L + + IE +P+D ID+ LG+I G+ + +E+++ +F +FC+GK
Sbjct: 406 LLDQAALSLQEVINGIEAGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465
>gi|377556343|ref|ZP_09786054.1| tRNA modification GTPase mnmE [Lactobacillus gastricus PS3]
gi|376168533|gb|EHS87292.1| tRNA modification GTPase mnmE [Lactobacillus gastricus PS3]
Length = 462
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 192/477 (40%), Positives = 276/477 (57%), Gaps = 28/477 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T +G G + I+R+SG A+ +V ++F+ G + +H + YG
Sbjct: 8 TIAAISTPVG--EGGISIIRVSGDDALPVVQKLFR----------GKDLAKVATHTINYG 55
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D + VDEV+ M APR+YTREDV+E+ CHG + R+L+ L GA LA PG
Sbjct: 56 HIVDPSNQQEVDEVMVSVMRAPRTYTREDVIEINCHGGLLATNRILQLVLSYGARLADPG 115
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAF+NGRLDLSQAE V LI AK+ + D AL + G S LV +R +++L +
Sbjct: 116 EFTQRAFINGRLDLSQAEAVMDLIRAKTDRSMDVALHQLDGDLSRLVRQLRQDILDVLAQ 175
Query: 273 IEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+E +D+ D + + ++ +K + + V L+TA K+L+ GL AI+GRPNVG
Sbjct: 176 VEVNIDYPEYDAVEEMTSQMLREKATMVKERVSGLLKTAQQGKVLRDGLATAIIGRPNVG 235
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNA ++AIVT +AGTTRDVIE V V GVP+ L+DTAGIR TDD VEKIGVER
Sbjct: 236 KSSLLNALLHEDKAIVTNVAGTTRDVIEEYVNVEGVPLKLIDTAGIRHTDDQVEKIGVER 295
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S AD+I++ + + ED EL+ +TE TP ++++NK D PS
Sbjct: 296 SRQAITTADLILLLIDQSRPLSEEDRELIT-------ATE-QTPRMVILNKTDL-PSVI- 345
Query: 451 EWNKVGNSFN-DHVFTCAVTGQ-GIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCEQLM 507
E N + N D + ++ Q G+Q+L AI I + V N R L
Sbjct: 346 ELNDLKTLVNGDPIIQTSILEQSGMQELGQAISHRFFNEGIENRQNQVMVTNARHIGLLK 405
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + AL + S ++ LP+D ID+ A LG+I+G+ +E+L+ +F +FC+GK
Sbjct: 406 QVESALTEVLSGLDAGLPVDLVQIDMTTAWNLLGEITGDSYQDELLTELFSQFCLGK 462
>gi|296452686|ref|ZP_06894377.1| tRNA modification GTPase TrmE [Clostridium difficile NAP08]
gi|296880062|ref|ZP_06904031.1| tRNA modification GTPase TrmE [Clostridium difficile NAP07]
gi|296258468|gb|EFH05372.1| tRNA modification GTPase TrmE [Clostridium difficile NAP08]
gi|296428929|gb|EFH14807.1| tRNA modification GTPase TrmE [Clostridium difficile NAP07]
Length = 462
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 177/474 (37%), Positives = 272/474 (57%), Gaps = 23/474 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+ G G +GI+R+SG A+ + +FK + SG + YG
Sbjct: 9 TIAAIATAPG--EGGIGILRISGERALKVAEEIFKSM-------SGKSIEEYNKRTLIYG 59
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
++D+ N++DEVL M P SYT EDV+E+ CHG + ++++L L LA+ GE
Sbjct: 60 NIVDKE-NIIDEVLLAYMKGPNSYTGEDVIEINCHGGFISVKKILELILSKDVRLAEAGE 118
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGR+DLSQAE V +I AK+ A + A ++G S + +R K E+L +
Sbjct: 119 FTKRAFLNGRIDLSQAEAVIDVIKAKTDIAHEVAQNQLEGSLSKKIRELRDKVTEILAHV 178
Query: 274 EARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
E +D+ ++++ + + DK + ++++ +TA K+L+ GL+ IVG+PNVGKS
Sbjct: 179 EVAIDYPEEDIEHITYQTLKDKTDELKKEIKKLYDTAESGKILREGLKTVIVGKPNVGKS 238
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLN+ RAIVT+I GTTRDVIE V + G+P+ ++DTAGIR+TDDIVEKIGVERS+
Sbjct: 239 SLLNSILGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDIVEKIGVERSK 298
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE- 451
AD+I+M + A + ED E+L +++ + I+++NK D E
Sbjct: 299 ESFTSADLIVMVLDASRKLSEEDIEILEKLKDKQ--------TIVLLNKNDLKQEIEEEK 350
Query: 452 -WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
V N N + A+ +GI++L+ I +V I N R + L +
Sbjct: 351 ILKYVEN--NSIIKISALQQEGIEELQDKIESMVYKGSIKNNSSLVVTNSRHKDALSKAY 408
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++ ++E+ +P DF +DL++ LG I+G+ ++E++L NIF FCIGK
Sbjct: 409 KSATDALIALEQSMPFDFVEVDLKNIWDYLGYINGDTVTEDLLDNIFHNFCIGK 462
>gi|258517429|ref|YP_003193651.1| tRNA modification GTPase TrmE [Desulfotomaculum acetoxidans DSM
771]
gi|257781134|gb|ACV65028.1| tRNA modification GTPase TrmE [Desulfotomaculum acetoxidans DSM
771]
Length = 461
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 185/476 (38%), Positives = 278/476 (58%), Gaps = 24/476 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSW-RPTSHVVEY 152
TIAAI T +G G +GIVR+SG ++ I ++F+ +K+K W + ++ + Y
Sbjct: 5 TIAAIATPLG--EGGIGIVRISGTESIIIAEKIFRSLKEK--------DWVKNLNYGLIY 54
Query: 153 GVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
G ++D N +VDEVL M AP SYTRE++VE+ CHG V LR+ L +GA A+P
Sbjct: 55 GYIVDPFNNSIVDEVLLSVMRAPNSYTRENIVEINCHGGLVPLRKTFELVLNSGARTAEP 114
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGRLDL+QAE+V +I AK+ + A+ ++G S +++++ K + LL
Sbjct: 115 GEFTKRAFLNGRLDLAQAESVIDVIRAKTSDSLSLAVKQLEGKLSEKISNMQDKLLYLLA 174
Query: 272 EIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+EA +DF ++++ + + +I + +++ +E A K+ + GL + I G+PNVG
Sbjct: 175 HVEAVIDFPEEDIEASTIEKIKAEIKDIIKEINKWIELARAGKIYREGLAVVIAGKPNVG 234
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNA K +RAIVTEI GTTRD IE + + G+PV + DTAG+RET D VEKIGV+
Sbjct: 235 KSSLLNALLKEKRAIVTEIPGTTRDAIEEYINIKGIPVKITDTAGLRETGDTVEKIGVQI 294
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S+ +GAD+I+ + +G+T D +L+ + + +I++INKID S
Sbjct: 295 SKEKIMGADIILYMLDVKNGFTDVDCYVLDEVINRN--------LIVIINKIDVG-SGIE 345
Query: 451 EWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
N + N + + V A+ G+ LE AI V A N R L R
Sbjct: 346 IINNISNKYENLEIVQISALKDIGLDLLEDAIASFVFSGNAAASNEIIISNTRHKSVLKR 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + IE +PLD +IDLR+A LG+I+G ++E+++ IF +FCIGK
Sbjct: 406 VVYNLQDVIEGIENAMPLDIVSIDLRNAWETLGEITGSSVTEDIIDKIFKEFCIGK 461
>gi|261410105|ref|YP_003246346.1| tRNA modification GTPase TrmE [Paenibacillus sp. Y412MC10]
gi|261286568|gb|ACX68539.1| tRNA modification GTPase TrmE [Paenibacillus sp. Y412MC10]
Length = 458
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 187/475 (39%), Positives = 281/475 (59%), Gaps = 25/475 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++G G + I+R+SGP +V V R+FK K ++ S H V YG
Sbjct: 5 TIAAISTAVG--EGGIAIIRVSGPDSVREVERIFKSKNKLTQEES---------HTVHYG 53
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D + G ++EVL M APRS+T EDVVE+ HG + ++RV+ L+ LA+PG
Sbjct: 54 HIVDPKTGENLEEVLVTVMRAPRSFTTEDVVEISAHGGVISVKRVMDLLLQLNIRLAEPG 113
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQAE V LI +KS A AL ++G S + +R +E L
Sbjct: 114 EFTKRAFLNGRIDLSQAEAVMDLIRSKSDRAFSVALKQVEGTLSRKINELRHTLVETLAH 173
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IE +D+ + ++ L + +K + +++ L+TA K+L+ G+ AIVGRPNVGK
Sbjct: 174 IEVNIDYPEHDVESLTSEFIKEKSKLVMGEIDKLLKTAQEGKILREGITTAIVGRPNVGK 233
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLN ++ RAIVT+I GTTRDVIE VT+ +P+ LLDTAGIRET D+VE+IGVERS
Sbjct: 234 SSLLNTLAQDNRAIVTDIPGTTRDVIEEFVTINNIPLKLLDTAGIRETMDVVEQIGVERS 293
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
+ AD+I++ ++A + ++ EL+ +I+ + I+++NK+D PS + +
Sbjct: 294 KHAVNEADLILLVLNASEPLHQDELELMEQIRGRQ--------CIVIMNKMDL-PS-NLD 343
Query: 452 WNKVGNSFNDHVFT-CAVTGQ-GIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+ + + D + +V Q GI LE AI + QI G + N R L ++
Sbjct: 344 LDILHRYYPDELIVPMSVKAQEGIDRLEEAISNLFFSGQIEGGDLTYVSNVRHIALLKKS 403
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K++L + E+ +P+D ID+R A L +I GE + + ++ IF +FC+GK
Sbjct: 404 KQSLQDAYDAAEQLIPIDMIQIDVRMAWEQLSEILGEAVGDSLIDQIFSQFCLGK 458
>gi|402300234|ref|ZP_10819761.1| tRNA modification GTPase TrmE [Bacillus alcalophilus ATCC 27647]
gi|401724624|gb|EJS97969.1| tRNA modification GTPase TrmE [Bacillus alcalophilus ATCC 27647]
Length = 458
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 184/475 (38%), Positives = 275/475 (57%), Gaps = 21/475 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAA+ T++G GA+GIVRLSG A+ I +++K K K+ +S H +
Sbjct: 3 FDTIAAVSTALG--EGAIGIVRLSGDEAISIADKIYKGKKPLKEVAS---------HTIV 51
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + + V+E + + AP+++TREDVVE+ CHG + + RVL+ L GA LA+
Sbjct: 52 YGHLIDPKTNDRVEEAMVSILRAPKTFTREDVVEINCHGGIMSVNRVLQLVLTNGARLAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A AL ++G S +T +R +E +
Sbjct: 112 PGEFTKRAFLNGRIDLSQAEGVMDLIRAKTDKAMSIALNQVEGRLSKKITVLRQALLETV 171
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+E +D+ + + + +L+ K + ++E L+TA K+++ GL I+GRPNV
Sbjct: 172 ANVEVNIDYPEYDAETMTHDLLKTKADFVIGEIEKLLQTAEQGKIVREGLSTVIIGRPNV 231
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ L+DTAGIRET+DIVEKIGVE
Sbjct: 232 GKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLKLVDTAGIRETEDIVEKIGVE 291
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS V A++I++ ++ D T ED L ++ +I+++NK D
Sbjct: 292 RSRQVLKEAELILLVLNYGDELTKEDEALFEAVE--------MMNVIVIVNKTDQEKKID 343
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
E K N V T + +G+++LE AI + + A + N R L +
Sbjct: 344 LEKVKKLNDGRPLVTTALIEDKGVEELEQAIADLFFSGSMEAEDVTYVSNSRHIALLEQA 403
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K + ++I+ +P+D ID+ LG+I G+ I + +L +F +FC+GK
Sbjct: 404 KSTIEDAVAAIDMGVPIDLVQIDVTRTWEILGEIIGDTIQDSLLDQLFSQFCLGK 458
>gi|167759571|ref|ZP_02431698.1| hypothetical protein CLOSCI_01928 [Clostridium scindens ATCC 35704]
gi|167662798|gb|EDS06928.1| tRNA modification GTPase TrmE [Clostridium scindens ATCC 35704]
Length = 471
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 187/477 (39%), Positives = 274/477 (57%), Gaps = 17/477 (3%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
+TIAAI T++ +GIVR+SG A DI RV+K KK KK S + SH + Y
Sbjct: 7 TTIAAISTAMSN--AGIGIVRMSGCDAFDIADRVYKG--KKNKKLS-----QQQSHTIHY 57
Query: 153 GVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
G + DR G +DEVL + M +P SYT ED +E+ CHG ++++L +E GA AQPG
Sbjct: 58 GYITDR-GKEIDEVLVMIMRSPHSYTGEDTIEINCHGGVYIVKKILELLIENGARPAQPG 116
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGRLDLSQAE V LI +++ A +++ ++G + + ++R + I
Sbjct: 117 EFTKRAFLNGRLDLSQAEAVGDLIVSQNEYALQSSINQLKGSIKNKINNIRKEIIYHTAF 176
Query: 273 IEARLDFDDEMPPLNLNLVMDKI-HAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IE LD + + ++ + + D+E L T + +L++ G+Q I+G+PN GK
Sbjct: 177 IETALDDPEHISVDEYGEELESVVRKLRNDIEKLLRTCDDGRLIKEGIQTVILGKPNAGK 236
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLN ++AIVTEIAGTTRDV+E + + G+ + ++DTAGIR+T D+VEKIGVE++
Sbjct: 237 SSLLNVLLGQDKAIVTEIAGTTRDVLEEHINLQGISLNIMDTAGIRDTKDVVEKIGVEKA 296
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKS----TESSTPMILVINKIDCAPS 447
++ A AD+II + A D E+L+ I+ K S +S MI+ K+ A
Sbjct: 297 KSHADKADLIIYVIDASTELDENDYEILSLIKG-KPSIILLNKSDLDMIVTKEKVQEAYF 355
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
ASN K G + A QGI +LE + + + + N R L
Sbjct: 356 ASNPAKKSGEPI-PIIEISAKNKQGIDELEEKLKDMFFEGNLSFNDEIYITNIRHKTALQ 414
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL R+ SI+ +P DF++IDL DA +LG I+GE I E++++ IF KFC+GK
Sbjct: 415 DAYNALERVTESIDAGMPEDFYSIDLMDAYESLGSITGETIGEDLVNEIFSKFCMGK 471
>gi|163783084|ref|ZP_02178079.1| tRNA modification GTPase TrmE [Hydrogenivirga sp. 128-5-R1-1]
gi|159881764|gb|EDP75273.1| tRNA modification GTPase TrmE [Hydrogenivirga sp. 128-5-R1-1]
Length = 448
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 192/474 (40%), Positives = 273/474 (57%), Gaps = 34/474 (7%)
Query: 95 IAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGV 154
I AI T G A+G+VRL+G + V R F+ + K + + YG
Sbjct: 5 IVAIATPFG--ESAIGVVRLTGKDVLPTVLRYFRTKSEVKPRYA------------HYGT 50
Query: 155 VLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEF 214
++D G +DE + V AP SYT ED+VEL HG+ + L+RVL L AG LA+PGEF
Sbjct: 51 LVDERGEPIDEGILVYYRAPNSYTGEDMVELSLHGNPLILKRVLELFLSAGCRLAEPGEF 110
Query: 215 TLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIE 274
T RAFLNG+LDL+QAE V +LISAK+ A A+L ++G S V S+R +EL IE
Sbjct: 111 TRRAFLNGKLDLAQAEAVAELISAKTELARRASLRQLRGELSRYVNSLRESLLELSAYIE 170
Query: 275 ARLDFDDE-MPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSS 333
A ++F +E +P L V+ + + + ++ L TA KLL+ G+++AIVGRPNVGKSS
Sbjct: 171 ADIEFSEEDIPTLTKEQVIGMVDRVLEGIDQLLSTAKTGKLLREGIKLAIVGRPNVGKSS 230
Query: 334 LLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEA 393
L NA K +RAIVT+I GTTRD IE S+ + G+PV L+DTAGIRE++D VE+IGVERS
Sbjct: 231 LFNALLKEDRAIVTDIEGTTRDYIEESLNLRGIPVRLIDTAGIRESEDPVERIGVERSME 290
Query: 394 VALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWN 453
ADV++ V A + EDS + ++ +++V NKID E
Sbjct: 291 KIEEADVVLFVVDASEELREEDSLIYEKL--------GDKDIVVVFNKIDRGEVVPLE-- 340
Query: 454 KVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKE 511
F H + A+ G G++DLE I+K G + G V+ R E L + +E
Sbjct: 341 ----KFQGHSIIKVSALKGYGLKDLEEEILKKAG--AVAHEGLNIYVSVRHEELLKKARE 394
Query: 512 ALVRLKSSI-EEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + + +E++ + +D+R+A+ LG+I G +EEVL +IF +FCIGK
Sbjct: 395 TLSKFRDRYAKEDISPEIAMLDVREASDFLGEIVGHITTEEVLGSIFSRFCIGK 448
>gi|418960547|ref|ZP_13512434.1| tRNA modification GTPase TrmE [Lactobacillus salivarius SMXD51]
gi|380344214|gb|EIA32560.1| tRNA modification GTPase TrmE [Lactobacillus salivarius SMXD51]
Length = 461
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 182/478 (38%), Positives = 278/478 (58%), Gaps = 27/478 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVRLSG AV I +VFK G + +H
Sbjct: 6 FDTIAAIST----PPGEGAISIVRLSGEDAVKIANKVFK----------GKNLEKVPTHT 51
Query: 150 VEYGVVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG +++ N +DEV+ MLAPR++TREDV+E+ CHG V ++L+ L GA L
Sbjct: 52 INYGHIVNPKTNEELDEVMVSVMLAPRTFTREDVIEINCHGGIVPTNQILQLLLSNGARL 111
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFL+GR+DL+QAE+V LI AK+ + AL + G S L+ ++R ++
Sbjct: 112 AEPGEFTKRAFLHGRIDLTQAESVMDLIRAKTDRSMKVALNQLDGNLSHLIRNLRQDILD 171
Query: 269 LLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L ++E +D+ D++ L ++ +K + + ++ L TA K+L+ GL AIVGR
Sbjct: 172 VLAQVEVNIDYPEYDDVETLTTKMLREKAIEVKKSIQQLLTTAKQGKVLREGLATAIVGR 231
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D VE+I
Sbjct: 232 PNVGKSSLLNHLLHEDKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDKVERI 291
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS AD++++ ++A + T ED EL+ K+ I+++NK D
Sbjct: 292 GVERSRKAIEQADLVMLVLNASEELTDEDKELIQATSGKKR--------IVILNKTDLPQ 343
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ + + ++ + T + G+ LE I ++ + N R L
Sbjct: 344 KLNMDEVRELVPEDELITTSVLKKTGVDKLEEKIAELFFGGIENSQSTIMVTNARHIALL 403
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ +++L + ++ +P+D ID+ +A LG+I+G+ +E+L+ +F +FC+GK
Sbjct: 404 NQAEDSLDAVLQGLDSGMPVDLCQIDMTNAWDELGEITGDSYQDELLTQLFSQFCLGK 461
>gi|385800981|ref|YP_005837385.1| tRNA modification GTPase trmE [Halanaerobium praevalens DSM 2228]
gi|309390345|gb|ADO78225.1| tRNA modification GTPase trmE [Halanaerobium praevalens DSM 2228]
Length = 464
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 173/476 (36%), Positives = 279/476 (58%), Gaps = 22/476 (4%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
TIAAI T G G G +R+SGP A I ++FK V ++ Y
Sbjct: 7 DTIAAIATPFG--TGGTGKIRISGPQAYQIGDKIFKSV------KKEKKLKEQKTYTAHY 58
Query: 153 GVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
G + D + +DEV+A+ M P S+T E+V+E CHG LR VL L+ GA +A+P
Sbjct: 59 GEIRDPKTDKTIDEVVAIMMKKPHSFTGENVLEFDCHGGMTPLRAVLELVLKQGARMAEP 118
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEF+ RAFLNGR+DL+QAE + ++I++K+ + D A+ + G S+ V ++ + +E+L
Sbjct: 119 GEFSQRAFLNGRIDLAQAEAIIEVINSKTEKSLDLAIDQLNGKLSNKVEKIKDQAVEILA 178
Query: 272 EIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+EA +D+ +DE+ + DK + + Q+ + L+++ K+ + GL+ IVG+PNVG
Sbjct: 179 HLEAAIDYPEDEIEGFRPEKLGDKFNYLKQETDKLLKSSKQGKIYKEGLKTVIVGKPNVG 238
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLN + + +RAIVT+I GTTRDVIE + + G+P+ ++DTAGIRET D VEKIGVE+
Sbjct: 239 KSSLLNYFLEEKRAIVTDIPGTTRDVIEEYINLKGIPLKIIDTAGIRETKDAVEKIGVEK 298
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
+ +A AD+++ + G T+ED E+ I++ P+I+++NK D +
Sbjct: 299 TRKLAEKADLVLFMLDINQGITAEDREIYQLIKNK--------PVIIIVNKTDLEAKITK 350
Query: 451 EWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E K+ F + ++ + +G+ L+ I+ + +I A R + L++
Sbjct: 351 E--KIKEEFPEPSLLWISILKEEGLIQLKDNILAEILDEEIEADTEAVITQSRHRDALVK 408
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ A+ R+ S E ++P DF TIDL+D LG+I+GE +++++L IF FC+GK
Sbjct: 409 AQSAIERVIVSHETKMPYDFLTIDLKDFLNGLGKITGETVADDILDRIFKDFCLGK 464
>gi|90961107|ref|YP_535023.1| tRNA modification GTPase TrmE [Lactobacillus salivarius UCC118]
gi|227892406|ref|ZP_04010211.1| tRNA modification GTPase TrmE [Lactobacillus salivarius ATCC 11741]
gi|417787308|ref|ZP_12434991.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Lactobacillus
salivarius NIAS840]
gi|417809280|ref|ZP_12455962.1| tRNA modification GTPase TrmE [Lactobacillus salivarius GJ-24]
gi|122449446|sp|Q1WVH7.1|MNME_LACS1 RecName: Full=tRNA modification GTPase MnmE
gi|90820301|gb|ABD98940.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Lactobacillus salivarius UCC118]
gi|227865813|gb|EEJ73234.1| tRNA modification GTPase TrmE [Lactobacillus salivarius ATCC 11741]
gi|334307485|gb|EGL98471.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Lactobacillus
salivarius NIAS840]
gi|335351236|gb|EGM52730.1| tRNA modification GTPase TrmE [Lactobacillus salivarius GJ-24]
Length = 464
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 182/478 (38%), Positives = 278/478 (58%), Gaps = 27/478 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVRLSG AV I +VFK G + +H
Sbjct: 9 FDTIAAIST----PPGEGAISIVRLSGEDAVKIANKVFK----------GKNLEKVPTHT 54
Query: 150 VEYGVVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG +++ N +DEV+ MLAPR++TREDV+E+ CHG V ++L+ L GA L
Sbjct: 55 INYGHIVNPKTNEELDEVMVSVMLAPRTFTREDVIEINCHGGIVPTNQILQLLLSNGARL 114
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFL+GR+DL+QAE+V LI AK+ + AL + G S L+ ++R ++
Sbjct: 115 AEPGEFTKRAFLHGRIDLTQAESVMDLIRAKTDRSMKVALNQLDGNLSHLIRNLRQDILD 174
Query: 269 LLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L ++E +D+ D++ L ++ +K + + ++ L TA K+L+ GL AIVGR
Sbjct: 175 VLAQVEVNIDYPEYDDVETLTTKMLREKAIEVKKSIQQLLTTAKQGKVLREGLATAIVGR 234
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D VE+I
Sbjct: 235 PNVGKSSLLNHLLHEDKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDKVERI 294
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS AD++++ ++A + T ED EL+ K+ I+++NK D
Sbjct: 295 GVERSRKAIEQADLVMLVLNASEELTDEDKELIQATSGKKR--------IVILNKTDLPQ 346
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ + + ++ + T + G+ LE I ++ + N R L
Sbjct: 347 KLNMDEVRELVPEDELITTSVLKKTGVDKLEEKIAELFFGGIENSQSTIMVTNARHIALL 406
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ +++L + ++ +P+D ID+ +A LG+I+G+ +E+L+ +F +FC+GK
Sbjct: 407 NQAEDSLDAVLQGLDSGMPVDLCQIDMTNAWDELGEITGDSYQDELLTQLFSQFCLGK 464
>gi|21910288|ref|NP_664556.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS315]
gi|28895865|ref|NP_802215.1| tRNA modification GTPase TrmE [Streptococcus pyogenes SSI-1]
gi|342165126|sp|P0DG22.1|MNME_STRP3 RecName: Full=tRNA modification GTPase MnmE
gi|342165127|sp|P0DG23.1|MNME_STRPQ RecName: Full=tRNA modification GTPase MnmE
gi|21904483|gb|AAM79359.1| putative thiophene degradation protein F [Streptococcus pyogenes
MGAS315]
gi|28811115|dbj|BAC64048.1| putative thiophene degradation protein F [Streptococcus pyogenes
SSI-1]
Length = 458
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 181/480 (37%), Positives = 275/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+ I VFK G + SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTDALAIAQSVFK----------GKNLEQVASHTIN 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G ++DEV+ MLAP+++TRE+VVE+ HG +L+ + GA +A+
Sbjct: 55 YGHIIDPKTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A A+ + G S L+ R + + L
Sbjct: 115 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +EN L TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 235 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D LLN Q + + I+++NK D
Sbjct: 295 ERSKKALQEADLVLLVLNASEKLTDQDRALLNLSQDSNR--------IILLNKTDLEQKI 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +D++ +T Q I +E I ++ GL + A + N R
Sbjct: 347 ELEQLP-----DDYIPISVLTNQNINLIEDRINQLFFDNAGLVEQDA---TYLSNARHIS 398
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ +T ++L + + +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 399 LIEKTVQSLEAVNDGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458
>gi|385839917|ref|YP_005863241.1| tRNA modification GTPase mnmE [Lactobacillus salivarius CECT 5713]
gi|300214038|gb|ADJ78454.1| tRNA modification GTPase mnmE [Lactobacillus salivarius CECT 5713]
Length = 464
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 182/478 (38%), Positives = 278/478 (58%), Gaps = 27/478 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVRLSG AV I +VFK G + +H
Sbjct: 9 FDTIAAIST----PPGEGAISIVRLSGEDAVKIANKVFK----------GKNLEKVPTHT 54
Query: 150 VEYGVVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG +++ N +DEV+ MLAPR++TREDV+E+ CHG V ++L+ L GA L
Sbjct: 55 INYGHIVNPKTNEELDEVMVSVMLAPRTFTREDVIEINCHGGIVPTNQILQLLLSNGARL 114
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFL+GR+DL+QAE+V LI AK+ + AL + G S L+ ++R ++
Sbjct: 115 AEPGEFTKRAFLHGRIDLTQAESVMDLIRAKTDRSMKVALNQLDGNLSHLIRNLRQDILD 174
Query: 269 LLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L ++E +D+ D++ L ++ +K + + ++ L TA K+L+ GL AIVGR
Sbjct: 175 VLAQVEVNIDYPEYDDVETLTTKMLREKAIEVKKSIQQLLTTAKQGKVLREGLATAIVGR 234
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D VE+I
Sbjct: 235 PNVGKSSLLNHLLHEDKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDKVERI 294
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS AD++++ ++A + T ED EL+ K+ I+++NK D
Sbjct: 295 GVERSRKAIEQADLVMLVLNASEELTDEDKELIQATSGKKR--------IVILNKTDLPR 346
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ + + ++ + T + G+ LE I ++ + N R L
Sbjct: 347 KLNMDEVRELVPEDELITTSVLKKTGVDKLEEKIAELFFGGIENSQSTIMVTNARHIALL 406
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ +++L + ++ +P+D ID+ +A LG+I+G+ +E+L+ +F +FC+GK
Sbjct: 407 NQAEDSLDAVLQGLDSGMPVDLCQIDMTNAWDELGEITGDSYQDELLTQLFSQFCLGK 464
>gi|15896965|ref|NP_350314.1| tRNA modification GTPase TrmE [Clostridium acetobutylicum ATCC 824]
gi|337738941|ref|YP_004638388.1| tRNA modification GTPase TrmE [Clostridium acetobutylicum DSM 1731]
gi|384460453|ref|YP_005672873.1| tRNA modification GTPase TrmE [Clostridium acetobutylicum EA 2018]
gi|21363021|sp|Q97CW2.1|MNME_CLOAB RecName: Full=tRNA modification GTPase MnmE
gi|15026841|gb|AAK81654.1|AE007868_10 Predicted GTPase, ThdF family [Clostridium acetobutylicum ATCC 824]
gi|325511142|gb|ADZ22778.1| tRNA modification GTPase TrmE [Clostridium acetobutylicum EA 2018]
gi|336292229|gb|AEI33363.1| tRNA modification GTPase TrmE [Clostridium acetobutylicum DSM 1731]
Length = 459
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 174/476 (36%), Positives = 284/476 (59%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T+IG + I+R+SG A+ IV +VFK KK G ++ +
Sbjct: 4 FDTIAAISTAIGNS--GISIIRVSGKEALSIVDKVFKGKSKK-------GIIEMNTYTMR 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG +++ +G+++DEV+ M P+S+T E+VVE+ CHG +RVL + AGA LA+
Sbjct: 55 YGNIVELSNGDIIDEVIVSFMKGPKSFTGENVVEVNCHGGMYPTKRVLEEIIRAGARLAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGRLDLSQAE V +I++K+ + +A+A +G S + +R + +E++
Sbjct: 115 PGEFTKRAFLNGRLDLSQAEAVMDIINSKTELSMKSAVAQSEGVISREINKLRQRILEII 174
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IEA +D+ +D++ + V ++ + ++++ + +A+ K+L+ GL I+G+PNV
Sbjct: 175 AHIEATVDYPEDDLEEVTAENVSKDLNDILKEIDELILSADEGKILREGLNTVIIGKPNV 234
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN +RAIVT+I GTTRDVIE + + G+P+ ++DTAGIRET+D++EK+GVE
Sbjct: 235 GKSSLLNLLLDEKRAIVTDIPGTTRDVIEEYINISGIPIKIVDTAGIRETEDVIEKMGVE 294
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD+II + + +ED E+++ I+ K I+++NK+D
Sbjct: 295 RSKEKMENADLIIFMIDSSKKIDAEDLEIIDYIKDKK--------YIVLLNKVDLKNRED 346
Query: 450 NEWNKVGNSFNDHVFTCAVTGQ-GIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ N D++ +V + G++ L+ I + + N R E L+R
Sbjct: 347 KSKLDLLNK--DNIIEFSVKEKVGLEKLKDTIENMFATGNLQHSN-TMITNTRHKEALLR 403
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+E ++++ L +D +ID+R+A ALG+I+GE + E+++ IF FC+GK
Sbjct: 404 AREHCTTSLKALQDTLAIDLASIDIRNAWTALGEITGETLQEDLIDKIFKDFCLGK 459
>gi|365906110|ref|ZP_09443869.1| tRNA modification GTPase TrmE [Lactobacillus versmoldensis KCTC
3814]
Length = 462
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 178/477 (37%), Positives = 280/477 (58%), Gaps = 26/477 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
+ TIAAI T PPG + IVR+SG AV+IV RVF+ G + SH
Sbjct: 8 YDTIAAIST----PPGEGGISIVRVSGDQAVNIVKRVFQ----------GKDLAKVASHT 53
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D +VDEV+ M AP++YTREDV+E+ HG V +VL+ + AGA +
Sbjct: 54 INYGHIVDPDTKELVDEVIVSVMRAPKTYTREDVLEVNTHGGIVPTNKVLQLLIGAGARM 113
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGRLDL+QAE+V LI AK+ A A+ + G L++ +R + ++
Sbjct: 114 AEPGEFTKRAFLNGRLDLTQAESVMDLIRAKTDKAMQVAVNQLDGNLEHLISGLRQEILD 173
Query: 269 LLTEIEARLDFDD-EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
+L ++E +D+ + + + ++++K + + ++ L+TA ++LQ GL AI+G+P
Sbjct: 174 VLAQVEVNIDYPEYDTEQMTTKMLLEKAQTVGKSIDELLKTAESGEILQHGLATAIIGKP 233
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN ++AIVT++AGTTRDV+E V + GVP+ L+DTAGIR+T+D VEKIG
Sbjct: 234 NVGKSSLLNRLLDEDKAIVTDVAGTTRDVVEQYVNIDGVPLKLIDTAGIRDTEDKVEKIG 293
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS+ AD++I+ + A ED +LL+ ++ I++ NK D +P
Sbjct: 294 VERSKKAIESADLVILVLDASRPLEEEDLQLLDATSDKRR--------IVIFNKNDLSPV 345
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
K + + + T A+ GIQ ++ I K+ + + RQ L
Sbjct: 346 LHPIDVKQLKADDIILLTSAIKNDGIQQIKDTIGKLFNAGIEDSSSNVIITSARQAGLLR 405
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K++L + S I+ +P+D ID+ + LG+I+G+ +E+++ +F +FC+GK
Sbjct: 406 QAKQSLNDVISGIDAGMPIDLVQIDMTNCWDKLGEITGDSYPDELITQLFSQFCLGK 462
>gi|336394118|ref|ZP_08575517.1| tRNA modification GTPase TrmE [Lactobacillus farciminis KCTC 3681]
Length = 463
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 184/480 (38%), Positives = 287/480 (59%), Gaps = 31/480 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
+ TIAAI T PPG A+ IVR+SG AVD+ +VFK G + SH
Sbjct: 8 YDTIAAIST----PPGEGAISIVRMSGDQAVDVAKKVFK----------GRDLAKVASHT 53
Query: 150 VEYGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG + D N ++DEV+ M AP+++TRED++E+ HG V +VL+ L GA +
Sbjct: 54 INYGHIYDPSDNSLIDEVMVSVMRAPKTFTREDIIEINTHGGIVATNKVLQLLLAYGARM 113
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DL+QAE+V LI AK+ A A+ + G L++++R + ++
Sbjct: 114 AEPGEFTKRAFLNGRIDLTQAESVMDLIRAKTDKAMQVAVNQLDGNLHHLISNLRQEILD 173
Query: 269 LLTEIEARLDFDD-EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ + + + ++++K +S+ +++ L+TA+ ++LQ GL AIVG+P
Sbjct: 174 SLAQVEVNIDYPEYDTDQMTTKMLLEKAKTVSKSIDSLLKTADSGEILQHGLATAIVGKP 233
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN E+AIVT++AGTTRDV+E V + GVP+ L+DTAGIR+T+D VEKIG
Sbjct: 234 NVGKSSLLNRLLDEEKAIVTDVAGTTRDVVEQYVNIDGVPLKLIDTAGIRDTEDKVEKIG 293
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS+A GAD++I+ + + +D ELL+ Q ++ I++ NK+D P
Sbjct: 294 VERSKAALKGADLVILVLDSSRELEEDDLELLDATQDKRR--------IVIFNKVDLMPV 345
Query: 448 ASNEWNKVGNSFNDHVF-TCAVTGQGIQDLETAIMKI--VGLHQIPAGGRRWAVNQRQCE 504
+ E + V +D + T A+ GI+ ++ I K+ G+ + RQ
Sbjct: 346 ITPE-SVVQLKADDVILKTSAIKNDGIETIKQTISKLFNAGIED-NNSSNVIITSARQAG 403
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + K +L + S IE +P+D ID+ LG+I+GE +E+++ +F +FC+GK
Sbjct: 404 LLRKAKNSLNDVISGIEAGMPIDLVQIDMTACWDTLGEITGESYQDELITQLFSQFCLGK 463
>gi|329768091|ref|ZP_08259600.1| tRNA modification GTPase mnmE [Gemella haemolysans M341]
gi|328838246|gb|EGF87858.1| tRNA modification GTPase mnmE [Gemella haemolysans M341]
Length = 460
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 184/476 (38%), Positives = 282/476 (59%), Gaps = 24/476 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI AI T++G GA+GIVRLSG A I ++ + K K +S S H + YG
Sbjct: 4 TICAISTALG--EGAIGIVRLSGDEAFSIAEKIVRLPKGKTVESLAS-------HTINYG 54
Query: 154 VVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
V+D N ++E++ V M+ PR+YT EDV+E+ CHG V +++VL CLE GA +A+PG
Sbjct: 55 NVVDPTTNEKIEEIMLVKMVGPRTYTTEDVIEINCHGGIVTIQKVLALCLEHGARMAEPG 114
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DL+QAE V I +K+ A+ A +QG S+L+ +R + +++LT
Sbjct: 115 EFTKRAFLNGRIDLTQAEAVIDFIKSKTDEASQIANNQMQGRLSTLIKRLRTEILDILTV 174
Query: 273 IEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+E +D+ D++ +++K ++ +E+ LET+ K+++ G+ AI+GRPNVG
Sbjct: 175 VEVNIDYPEYDDLEIETTKTILEKSTSIRNSLESLLETSKQGKIIKEGINTAIIGRPNVG 234
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLN + +AIVT+IAGTTRDV+E V + GVP+ L+DTAGIRETDDIVE+IGV+R
Sbjct: 235 KSSLLNNLLQENKAIVTDIAGTTRDVLEEYVNIKGVPIKLIDTAGIRETDDIVEQIGVKR 294
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS- 449
S+ AD+++ +++ + T +D ELL K TE T I+++NK+D
Sbjct: 295 SKEALEKADLVLFLLNSSEELTEDDKELL-------KLTEGKTT-IVILNKLDLETKIDI 346
Query: 450 NEWNKVGNSFNDHVF-TCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E K+ ++N + T T +GI +LE I + + N RQ + R
Sbjct: 347 AEVEKL--AYNHPIIKTSMTTYKGIDELEKNIRDLFFGGAARPKDATYLSNTRQINLIQR 404
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+L + E L +D ID + LG++ GE+ +E+++ +F +FC+GK
Sbjct: 405 ALASLNDAIGAAELGLEVDMVLIDYTNTFNLLGEVIGENSGDELINELFSRFCLGK 460
>gi|255659827|ref|ZP_05405236.1| tRNA modification GTPase TrmE [Mitsuokella multacida DSM 20544]
gi|260847902|gb|EEX67909.1| tRNA modification GTPase TrmE [Mitsuokella multacida DSM 20544]
Length = 461
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 188/474 (39%), Positives = 275/474 (58%), Gaps = 21/474 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI+AI T G G +G++R+SG A+ G+VF+ K +GS H YG
Sbjct: 6 TISAIATPQG--EGGIGVIRISGEHALKTAGKVFEAKNGKPLVLAGS-------HHAVYG 56
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
++D G VVDE LA+ MLAP SYT EDVVELQCHG + LR+ L +AGA A+ GE
Sbjct: 57 HIVDEKGQVVDEALALVMLAPHSYTVEDVVELQCHGGLMTLRKTLELTWKAGARPAERGE 116
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGRLDLS+A+ V +I A++ + A + G FS + ++R + + ++ I
Sbjct: 117 FTKRAFLNGRLDLSEAQAVMDIIQARTETSLTMAAGHLTGHFSKGIHAMRHEILGMIAHI 176
Query: 274 EARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
EA +DF +DE+ + + + + + L+TA+ ++L+ GL AI+G+PNVGKS
Sbjct: 177 EAAIDFPEDEVDDVLTYDIQKNVVEIRNKIAGLLQTAHAGRILRDGLLTAIIGKPNVGKS 236
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLN+ + ERAIVT++ GTTRD IE V G+P+ ++DTAGIR TDD+VE+IGVE++
Sbjct: 237 SLLNSLLREERAIVTDVPGTTRDSIEEYADVGGIPLRIIDTAGIRATDDVVERIGVEKAR 296
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
+ A +I+ A SED E+L ++ IL++NK D P + E
Sbjct: 297 SYVKEAALILALFDASRPLDSEDEEILKLVRGRDA--------ILLLNKDDLQPVVTAEM 348
Query: 453 NKVGNSFNDHVFTCAVTGQ-GIQDLETAIM-KIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+ V T + Q G+++L AI K+ Q G + + RQ E L +
Sbjct: 349 LQRHVKKEVPVITISTRTQDGLENLAKAITAKVYAGTQAGQEG-TFVTDARQAEVLRQAD 407
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
E L +IE ++ LDF +IDLR A LG+++GE + E++++ IF KFCIGK
Sbjct: 408 EHLAAAIRTIEADMGLDFISIDLRSAWEKLGELTGETVGEDIINEIFSKFCIGK 461
>gi|238855502|ref|ZP_04645807.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 269-3]
gi|260665206|ref|ZP_05866055.1| tRNA modification GTPase TrmE [Lactobacillus jensenii SJ-7A-US]
gi|238831868|gb|EEQ24200.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 269-3]
gi|260560943|gb|EEX26918.1| tRNA modification GTPase TrmE [Lactobacillus jensenii SJ-7A-US]
Length = 460
Score = 305 bits (782), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 178/478 (37%), Positives = 285/478 (59%), Gaps = 29/478 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T IG G + IVRLSG AV I ++FK G + SH +
Sbjct: 7 FDTIAAISTPIG--EGGISIVRLSGEDAVKIANKLFK----------GKNLSKVASHTIN 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D VVDEV+ +LAP+++T+ED+VE+ CHG V ++L+ L+ GA +A+
Sbjct: 55 YGHIVDPETSEVVDEVMVSVLLAPKTFTKEDMVEINCHGGIVVTNKILQLLLKHGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
GEFT RAF+NGR+DL+QAE+V ++ AK+ A A+ ++GG + ++R + ++ L
Sbjct: 115 AGEFTKRAFVNGRIDLTQAESVMDIVRAKTDKARQVAMNQLEGGLLVKIRTMRQEILDTL 174
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IE +D+ + + + + + ++ + + L+TA+ K+++SGL AIVGRPNV
Sbjct: 175 ANIEVNIDYPEYDADQVTAKQMQETSKSVIEKINRLLKTASEGKIMRSGLATAIVGRPNV 234
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ++ ++AIVT++AGTTRD +E V++ GVP+ L+DTAGI T+D VEKIGVE
Sbjct: 235 GKSSLLNYLTQDDKAIVTDVAGTTRDTLEEYVSIKGVPLKLVDTAGIHHTEDKVEKIGVE 294
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ ++A + T ED +L++ + K+ I+V+NK D +
Sbjct: 295 RSKKAIEQADLVLLLLNASEDLTPEDEKLIDYTKDKKR--------IVVLNKSDLGMKLN 346
Query: 450 NE-WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV--GLHQIPAGGRRWAVNQRQCEQL 506
E K N+ + V T + + + DLE AI K+ G+H + NQRQ L
Sbjct: 347 KEDLAKKTNA--EIVVTSILKEENLDDLEEAISKLFFSGIHN--SNNDVLVTNQRQAGLL 402
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K L + +++ ++P+D ID A LG+I+G+ +E+++ +F +FC+GK
Sbjct: 403 EKAKTQLTDVIDAVDNDVPVDIAQIDFTGAWDTLGEITGDSAPDELITQLFSQFCLGK 460
>gi|452992122|emb|CCQ96438.1| tRNA modification GTPase and tRNA-U34 5-formylation enzyme
[Clostridium ultunense Esp]
Length = 459
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 187/479 (39%), Positives = 274/479 (57%), Gaps = 27/479 (5%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT-SHV 149
T TIAAI T IG G + IVR+SG A+ IV +VF G R SH
Sbjct: 3 TMDTIAAISTPIG--EGGIAIVRVSGDEAISIVDKVF----------LGKKLLREVKSHT 50
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG + + G ++DE L M AP ++TREDVVE+ HG V + RVL + LEAGA +
Sbjct: 51 IHYGKIKSPKDGEIIDEALVTVMRAPHTFTREDVVEVNVHGGIVSVTRVLDSILEAGARM 110
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DL+QAE V LI +KS AA A+L+ ++G S + R IE
Sbjct: 111 AEPGEFTKRAFLNGRIDLTQAEAVIDLIRSKSDKAARASLSQLEGSLSQEIRKARQILIE 170
Query: 269 LLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L+ IE +D+ + ++ + + +K+ +++ E K+L+ G++ AI+G+P
Sbjct: 171 LMAHIEVTIDYPEHDVEEVTYAQIENKLKEALGVIKHLEERGREGKILREGVETAIIGKP 230
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLNA ++ +AIVT+I GTTRDV+E V V G+P+ L+DTAGIR+T+D+VEKIG
Sbjct: 231 NVGKSSLLNALTRQAKAIVTDIPGTTRDVVEEYVNVRGIPLKLMDTAGIRKTEDVVEKIG 290
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VE+S+ + A++I+M V+ + D +L ++ +IL++NK D
Sbjct: 291 VEKSKEIIRRAELILMVVNQGEPLEEIDYDLFTMVKGKN--------VILLLNKADLPER 342
Query: 448 ASNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
E ++ N F V + G+G+++LE AI + I + +N R
Sbjct: 343 VRIE--EIRNYFPKEPIVKLSILRGEGLEELEKAIANLFFKGGISRNDETFMLNSRHLHL 400
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++AL S E LP D IDL+ LG+I GE EE++S IF +FC+GK
Sbjct: 401 IRTGRKALEDALHSSRERLPYDMIEIDLKRGWSTLGEIIGETAGEEIISQIFSQFCLGK 459
>gi|422844744|ref|ZP_16891454.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
gi|325685111|gb|EGD27242.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
Length = 461
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 184/478 (38%), Positives = 282/478 (58%), Gaps = 29/478 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G G + IVR+SG A IV R+FK G + SH +
Sbjct: 8 FDTIAAISTPLG--EGGISIVRVSGEDAAAIVNRLFK----------GEDLEKVPSHTIN 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+A MLAP+++T+ED+VE+ CHG V +L+ L GA +A
Sbjct: 56 YGHIVDPATGQVIDEVMASVMLAPKTFTKEDIVEINCHGGIVVTNDILQLLLANGARMAD 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V +I AK+ A A+ + GG + + +R + +++L
Sbjct: 116 PGEFTKRAFVNGRIDLTQAESVMDIIRAKTDKARQVAVKQLSGGLLTEIRVLRQEILDVL 175
Query: 271 TEIEARLDF---DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
+E +D+ D+E + ++ A+S ++ LETA ++L++GL+ AIVGRP
Sbjct: 176 ANVEVNIDYPEYDEE--EVTAQKMLACAEAVSGKIDRLLETAQEGQILRNGLKTAIVGRP 233
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN ++S++AIVT++AGTTRD +E V+V GVP+ L+DTAGI T+D VEKIG
Sbjct: 234 NVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAGIHHTEDQVEKIG 293
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS+ AD+I++ + T ED LL K+ I+V+NK+D
Sbjct: 294 VERSKKAIAQADLILLLLDGSQELTEEDRRLLELTAGKKR--------IIVLNKMDLGQK 345
Query: 448 -ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ E K S ++ + T + + + +LE I K+ + + NQRQ L
Sbjct: 346 LTAAEIAK--ESGSEVISTSIMMKENLDELEALIKKLFFKGIENSNDQVLVTNQRQAGLL 403
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K+ L + S +E +P+D ID A +LG+I+G+ +E+++++F +FC+GK
Sbjct: 404 AKAKQQLADVASGLESGMPVDLVQIDFTGAWESLGEITGDSALDELINDLFSQFCLGK 461
>gi|374674315|dbj|BAL52206.1| GTP-binding protein ThdF [Lactococcus lactis subsp. lactis IO-1]
Length = 455
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 181/475 (38%), Positives = 275/475 (57%), Gaps = 28/475 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG A+ I V+K G + SH +
Sbjct: 7 FDTIAAISTPLG--EGAIAIVRLSGTDALKIAQSVYK----------GKNLTQVASHTIN 54
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG + + +VDEV+ M AP+++TRED+VE+ HG + +L+ L GA LA+P
Sbjct: 55 YGHIFEEE-RLVDEVMVSVMRAPKTFTREDIVEINTHGGIAVTQEILQLLLRNGARLAEP 113
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE+V LI AK+ AA+ A+ + G S ++ ++R + +E L
Sbjct: 114 GEFTKRAFLNGRIDLAQAESVMDLIRAKTDKAANIAVKQLDGSLSKMINNIRQEILESLA 173
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + ++++K Q +EN L TA K+L+ GL+ AI+GRPNV
Sbjct: 174 QVEVNIDYPEYDDVETMTSQMLLEKTAHFEQLLENLLSTAKRGKILREGLKTAIIGRPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+IAGTTRDVI + GVP+ L+DTAGIRETDD+VE IGVE
Sbjct: 234 GKSSLLNQLLREEKAIVTDIAGTTRDVITEFANIGGVPLELVDTAGIRETDDLVEAIGVE 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ + A + T +D ELL +++ + I+++NK D P
Sbjct: 294 RSKKALAEADLVLLVLDASNELTDKDLELLELSKNSNR--------IVLLNKTDL-PEKI 344
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+ G D++ A+ + + +E I +I +I A N R +
Sbjct: 345 DSTQISG----DYIRISALKNENLNAVEEKINQIFFAGEIEAKDATVLSNARHISIVEEA 400
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+AL S + LP+D +D+ LG+I+GE +E+++ +F +FC+GK
Sbjct: 401 LKALKEANSGLALGLPVDLIQVDVTRCWQLLGEITGEAAPDELITQLFSQFCLGK 455
>gi|255081831|ref|XP_002508134.1| hypothetical protein MICPUN_60555 [Micromonas sp. RCC299]
gi|226523410|gb|ACO69392.1| hypothetical protein MICPUN_60555 [Micromonas sp. RCC299]
Length = 662
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 187/369 (50%), Positives = 238/369 (64%), Gaps = 32/369 (8%)
Query: 90 GTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
G TI AI T + G V I+RLSGP AV+ VF+P + + ++ P+SH
Sbjct: 91 GDGDTIVAIATPVVPNAGGVAIIRLSGPRAVEAARAVFRPASRAARAAARE-GAPPSSHT 149
Query: 150 VEYGVVLD--------RHGN----------VVDEVLAVPMLAPRSYTREDVVELQCHGSE 191
YGVV+D R N VVDEVL +PML PRSYT EDVVE+ CHG
Sbjct: 150 ALYGVVVDPTSVPNGSRRVNDEDVDADALDVVDEVLVLPMLRPRSYTAEDVVEIHCHGGS 209
Query: 192 VCLRRVL-----RACLE------AGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKS 240
VC++RVL R L+ G LA+PGEFTLRAFLNGRLDL+QAE V L++A++
Sbjct: 210 VCVQRVLSLLTRRDLLDPSGDTAGGVRLARPGEFTLRAFLNGRLDLTQAEAVHSLVAART 269
Query: 241 VAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQ 300
AAD ALA ++GG +S V RA+C++LL E+EARLDF+DE+ PL+ + + ++ A+
Sbjct: 270 ERAADGALAALRGGLASPVRDARARCVDLLAELEARLDFEDELTPLDSDAIAAEVAAVRA 329
Query: 301 DVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEAS 360
DV L TA KLL +G+ +AIVG+PN GKSSLLNAWS+SERAIVT IAGTTRDV+EA
Sbjct: 330 DVAKVLATARRGKLLDTGVTVAIVGKPNAGKSSLLNAWSRSERAIVTPIAGTTRDVVEAR 389
Query: 361 VTVCGVPVTLLDTAGIRETD--DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSEL 418
V G+PVTLLDTAGIR D VE IGV+RS A A GAD +I+ V A +GWT+ D +
Sbjct: 390 VECAGLPVTLLDTAGIRRGAGVDEVEAIGVKRSVAAAAGADAVIVVVDATEGWTAADDDA 449
Query: 419 LNRIQSNKK 427
I + K+
Sbjct: 450 CAGILNRKR 458
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 85/135 (62%), Gaps = 7/135 (5%)
Query: 436 ILVINKIDCAPSASNEWN-----KVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIP 490
IL +NK D A +A + +V F V AVTG G+++LE + +IV +
Sbjct: 529 ILAVNKTD-AIAADVALDAIVPVEVSGKFAAVVRVSAVTGAGLEELERELGRIVEGGSVD 587
Query: 491 AGGRRWAVNQRQCEQLMRTKEALVRLKS-SIEEELPLDFWTIDLRDAALALGQISGEDIS 549
A G W+ NQRQ E L + AL RL++ ++ LP+DFWTIDLR+AA+ALG ++GED+S
Sbjct: 588 AEGGAWSANQRQAEALEQALGALERLEAIVVDGNLPVDFWTIDLREAAMALGAVTGEDVS 647
Query: 550 EEVLSNIFGKFCIGK 564
E+VL +F KFCIGK
Sbjct: 648 EDVLDVVFTKFCIGK 662
>gi|452991710|emb|CCQ96934.1| tRNA modification GTPase and tRNA-U34 5-formylation enzyme
[Clostridium ultunense Esp]
Length = 466
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 178/474 (37%), Positives = 281/474 (59%), Gaps = 19/474 (4%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
TIAAI T+IG +GIVR+SG ++ I R+FK K+ ++ G R + Y
Sbjct: 10 DTIAAISTAIG--EAGIGIVRMSGKKSIHIANRLFKS---KRIENLRDGENRK----LIY 60
Query: 153 GVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
G ++D ++ ++DEVL M P +YTRE++VE+ CHG + ++++L LE G+ LA+P
Sbjct: 61 GHIIDPKNNEIIDEVLIAYMQEPYTYTRENMVEIYCHGGIISVKKILELVLENGSRLAEP 120
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGRLDL+Q+E V +I AK+ + +L ++G S+ V +R +E++
Sbjct: 121 GEFTKRAFLNGRLDLAQSEAVIDMIRAKTDRSFQVSLDQLEGSLSNKVRKIRDLLLEIIA 180
Query: 272 EIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
IE +DF D+++ + + +K ++++++ LET++ K+L+ GL I+G+PNVG
Sbjct: 181 HIEVSIDFPDEDVEEVTYEELEEKARLVNREIDRLLETSDRGKILRDGLSTVILGKPNVG 240
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNA + RAIVT I GTTRD+IE V + G+P+ ++DTAGIR TDD+VEKIGV+R
Sbjct: 241 KSSLLNAILRENRAIVTNIPGTTRDIIEEYVNIDGIPLKIVDTAGIRATDDLVEKIGVDR 300
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
+ + AD+II A D T ED ++++ I+ K I+++NK D
Sbjct: 301 AREMVDKADLIIAVFDASDNLTDEDFQIIDIIKERKS--------IVLLNKTDLPSEYDE 352
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
++ K + + T ++G GI LE AI + + N R QL++ K
Sbjct: 353 DYLKRLLPDKEIIVTSIISGVGIGRLEQAIKDMFYRGNLEIESDVIVTNLRHKNQLIKAK 412
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + + I +PLD +D+++ LG+ISG+ + E++L IF +FCIGK
Sbjct: 413 KNIEDGLNGIISNVPLDCIEVDIKNCWENLGEISGDTVGEDILDKIFSEFCIGK 466
>gi|256618548|ref|ZP_05475394.1| tRNA modification GTPase [Enterococcus faecalis ATCC 4200]
gi|256598075|gb|EEU17251.1| tRNA modification GTPase [Enterococcus faecalis ATCC 4200]
Length = 465
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 187/480 (38%), Positives = 283/480 (58%), Gaps = 29/480 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVRLSG AV I +V++ K K PT H
Sbjct: 8 FDTIAAIST----PPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKV-------PT-HT 55
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D ++ ++DEV+ M AP+++TREDVVE+ CHG V + ++L+ L GA +
Sbjct: 56 IHYGHIVDPQNDQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLREGARM 115
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
+PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL + G S+L+ S+R + +
Sbjct: 116 GEPGEFTKRAFLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILN 175
Query: 269 LLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L ++E +D+ D++ L L+++K + ++ L TA K+L+ GL AI+GR
Sbjct: 176 TLAQVEVNIDYPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGR 235
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+DIVE+I
Sbjct: 236 PNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERI 295
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS +D+I++ ++ + T ED +LL + K+ ++++NK+D
Sbjct: 296 GVERSRKALADSDLILLVLNQSEELTEEDRQLLEATKGLKR--------VILLNKMDLPT 347
Query: 447 SAS-NEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCE 504
NE ++ + + + + +V + G+ LE I + Q + N R
Sbjct: 348 KLDPNELQELVPA--EEILSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIA 405
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + +L + + IE +P+D ID+ LG+I G+ + +E+++ +F +FC+GK
Sbjct: 406 LLDQAALSLQEVINGIEAGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465
>gi|301299788|ref|ZP_07206030.1| tRNA modification GTPase TrmE [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300852601|gb|EFK80243.1| tRNA modification GTPase TrmE [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 464
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 181/478 (37%), Positives = 278/478 (58%), Gaps = 27/478 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVRLSG AV I +VFK G + +H
Sbjct: 9 FDTIAAIST----PPGEGAISIVRLSGEDAVKIANKVFK----------GKNLEKVPTHT 54
Query: 150 VEYGVVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG +++ N +DEV+ MLAPR++TRED++E+ CHG V ++L+ L GA L
Sbjct: 55 INYGHIVNPKTNEELDEVMVSVMLAPRTFTREDIIEINCHGGIVPTNQILQLLLSNGARL 114
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFL+GR+DL+QAE+V LI AK+ + AL + G S L+ ++R ++
Sbjct: 115 AEPGEFTKRAFLHGRIDLTQAESVMDLIRAKTDRSMKVALNQLDGNLSHLIRNLRQDILD 174
Query: 269 LLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L ++E +D+ D++ L ++ +K + + ++ L TA K+L+ GL AIVGR
Sbjct: 175 VLAQVEVNIDYPEYDDVETLTTKMLREKAIEVKKSIQQLLTTAKQGKVLREGLATAIVGR 234
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+D VE+I
Sbjct: 235 PNVGKSSLLNHLLHEDKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDKVERI 294
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS AD++++ ++A + T ED EL+ K+ I+++NK D
Sbjct: 295 GVERSRKAIEQADLVMLVLNASEELTDEDKELIQATSGKKR--------IVILNKTDLPQ 346
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ + + ++ + T + G+ LE I ++ + N R L
Sbjct: 347 KLNMDEVRELVPEDELITTSVLKKTGVDKLEEKIAELFFGGIENSQSTIMVTNARHIALL 406
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ +++L + ++ +P+D ID+ +A LG+I+G+ +E+L+ +F +FC+GK
Sbjct: 407 NQAEDSLDAVLQGLDSGMPVDLCQIDMTNAWDELGEITGDSYQDELLTQLFSQFCLGK 464
>gi|385826716|ref|YP_005863058.1| putative tRNA modification GTPase TrmE [Lactobacillus johnsonii DPC
6026]
gi|329668160|gb|AEB94108.1| putative tRNA modification GTPase TrmE [Lactobacillus johnsonii DPC
6026]
Length = 461
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 180/477 (37%), Positives = 283/477 (59%), Gaps = 27/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T IG G + IVRLSG AV I ++FK G+ + SH +
Sbjct: 8 FDTIAAISTPIG--EGGISIVRLSGEDAVAIANKLFK----------GADLTQVPSHTIH 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + +VVDE + + AP+++TRED+VE+ CHG + +L+ L GA +A
Sbjct: 56 YGHIVDPKTKDVVDETMVSVLRAPKTFTREDMVEINCHGGMIVTNDILQLLLANGARMAD 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V ++ AK+ + A+ + GG + ++R + ++ +
Sbjct: 116 PGEFTKRAFMNGRIDLTQAESVMDIVRAKTDKSRQVAMTQLAGGLLDKIRTMRQELLDTM 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
E +D+ + +M L + K +S+ ++ L+TA K++++GL AIVGRPNV
Sbjct: 176 AHEEVNIDYPEYDMDDLTSQEMKKKAEEVSKQIDQLLKTAQEGKIIRNGLATAIVGRPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ++ ++AIVT+IAGTTRD +E V+V GVP+ L+DTAGI T++ VEKIGVE
Sbjct: 236 GKSSLLNYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTENKVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ + A T ED LLN + +NKK I+++NK D S
Sbjct: 296 RSKKAIAEADLVLLLLDASQDLTDEDKNLLN-LTANKKR-------IIILNKQDLGTKIS 347
Query: 450 NEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
E + D+ + T + + + LE AI ++ + + NQRQ L
Sbjct: 348 QEMIR---EITDNPIIVTSILKQENMAALENAIEQLFFSGIENSQNQILVTNQRQAGLLA 404
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K++L + + I++ +PLD IDL++A LG+I+GE +E+++ +F +FC+GK
Sbjct: 405 KAKQSLEDVVNGIDDAMPLDLVQIDLKNAWDTLGEITGESAPDELITQLFSQFCLGK 461
>gi|317496611|ref|ZP_07954958.1| tRNA modification GTPase TrmE [Gemella morbillorum M424]
gi|316913276|gb|EFV34775.1| tRNA modification GTPase TrmE [Gemella morbillorum M424]
Length = 460
Score = 305 bits (781), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 185/479 (38%), Positives = 286/479 (59%), Gaps = 30/479 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI AI T++G GA+GIVRLSG A I ++ + K + +S PT H + Y
Sbjct: 4 TICAISTALG--EGAIGIVRLSGDEAFSIADKIVRLPKGRTVES------LPT-HTINYA 54
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D + ++E++ V M+ PR+YT EDVVE+ CHG + +++VL CLE GA +A+PG
Sbjct: 55 NIIDPKTEEKIEEIMLVKMVGPRTYTTEDVVEINCHGGIITIQKVLALCLEYGARMAEPG 114
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DL+QAE V I +K+ A+ A +QG S+L+ +RA+ +++L
Sbjct: 115 EFTKRAFLNGRIDLTQAEAVIDFIKSKTDEASQIANNQMQGRLSTLIKRLRAEILDILAV 174
Query: 273 IEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+E +D+ D++ +++K ++ +E LET+ K+++ G+ AI+GRPNVG
Sbjct: 175 VEVNIDYPEYDDLEIETTKTILEKSTSIKNSLEALLETSKQGKIIKEGINTAIIGRPNVG 234
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLN + +AIVT+IAGTTRDV+E V + GVP+ L+DTAGIRET+D+VEKIGVER
Sbjct: 235 KSSLLNNLLQENKAIVTDIAGTTRDVLEEHVNIKGVPIKLIDTAGIRETEDVVEKIGVER 294
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS- 449
S+ AD+++ +++ + T +D ELL K TE T I+++NK+D
Sbjct: 295 SKEALEKADLVLFLLNSSEELTDDDRELL-------KLTEGKTT-IIILNKLDLETKIDI 346
Query: 450 NEWNKVGNSFNDHVF-TCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E K+ ++N + T T +GI +LE I + + N RQ +
Sbjct: 347 EEIEKL--TYNHPIIKTSMTTYKGIDELEKNIRDLFFKGAARPKDATYLSNTRQINLI-- 402
Query: 509 TKEALVRLKSSI---EEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++ALV L +I E L +D ID +A LG++ GE+ +E+++ +F +FC+GK
Sbjct: 403 -QQALVSLNEAIKAAEMGLEVDMVLIDYTNAFNLLGEVIGENSGDELINELFSRFCLGK 460
>gi|326202766|ref|ZP_08192633.1| tRNA modification GTPase TrmE [Clostridium papyrosolvens DSM 2782]
gi|325986843|gb|EGD47672.1| tRNA modification GTPase TrmE [Clostridium papyrosolvens DSM 2782]
Length = 460
Score = 305 bits (781), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 179/476 (37%), Positives = 275/476 (57%), Gaps = 26/476 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAA+ T G G +G++R+SG A ++FK K ++ SH V YG
Sbjct: 6 TIAALSTPYG--TGGIGVIRISGEKAFSTADKIFKASKAMEE---------IQSHTVTYG 54
Query: 154 VVLDRHG-NVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D+ +++DEVL + M P ++TREDV+ELQCHG V + RVL + G A+PG
Sbjct: 55 KIVDKESKDIIDEVLLLKMCKPNTFTREDVIELQCHGGIVVINRVLDLIFKNGVRPAEPG 114
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQAE + LI++K+V ++ AA++ ++G S+ + +R + LL
Sbjct: 115 EFTKRAFLNGRIDLSQAEAIIDLINSKTVESSKAAVSHLEGRLSARLKIIRKTLVGLLAH 174
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IE +D+ + ++ + V++ + + ++ T K+L+ GL I I G+PNVGK
Sbjct: 175 IEVTVDYPEHDIEEITGEKVLENLKNIKGELHTLAGTFERGKILREGLNIVIAGKPNVGK 234
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLN S + +AIVT+I GTTRD+IE V + G+P + DTAGIR T D+VEKIGV ++
Sbjct: 235 SSLLNQLSGNTKAIVTDIPGTTRDIIEEYVNINGIPAKITDTAGIRNTQDVVEKIGVNKA 294
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
AD+ I+ +SA G ED E+LN ++ NKK+ +++INK D A +
Sbjct: 295 YEAVGQADLTIVVLSAETGIDDEDIEILNLVK-NKKA-------LILINKTDLAD--KEQ 344
Query: 452 WNKVGNSFNDH---VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
N++ +H + + +GI++LE I ++ +I N R + R
Sbjct: 345 VNEIKAQLENHDIILKASVINARGIEELEATISELFVKGKISGNDEVLLTNSRHKYLVDR 404
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
E + + +S +PLD TID++ A +GQI+GE I E V+ +IF +FCIGK
Sbjct: 405 AIEDIQQALNSFSTGMPLDMVTIDIKSCADNIGQITGESIDEAVMHDIFSRFCIGK 460
>gi|81429490|ref|YP_396491.1| tRNA modification GTPase TrmE [Lactobacillus sakei subsp. sakei
23K]
gi|123563597|sp|Q38UE9.1|MNME_LACSS RecName: Full=tRNA modification GTPase MnmE
gi|78611133|emb|CAI56186.1| tRNA modification GTPase trmE [Lactobacillus sakei subsp. sakei
23K]
Length = 462
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 179/477 (37%), Positives = 279/477 (58%), Gaps = 26/477 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TI AI T PPG A+ IVRLSG ++ I+ RV++ G + SH
Sbjct: 8 FDTITAIST----PPGEGAISIVRLSGDDSLAIIKRVYR----------GKDLDKVASHT 53
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D + VVDEV+ M AP+++TREDV+E+ CHG V R+L+ + GA +
Sbjct: 54 INYGHIIDPKTDAVVDEVMVSVMRAPKTFTREDVIEINCHGGIVATNRILQLLMSYGARM 113
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DL+QAE+V LI AK+ A A+ + G + L+ ++R + +E
Sbjct: 114 AEPGEFTKRAFLNGRIDLTQAESVMDLIRAKTDRAMQVAVDQLDGSLTHLIKNLRQEILE 173
Query: 269 LLTEIEARLDFDD-EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
+L ++E +D+ + + + ++++K + + L+TA K+L+ GL AIVGRP
Sbjct: 174 VLAQVEVNIDYPEYDTDEMTTRILLEKAELVKGRIGELLQTAQQGKVLREGLATAIVGRP 233
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN ++AIVT++AGTTRDV+E V V GVP+ L+DTAGI +T+D VEKIG
Sbjct: 234 NVGKSSLLNHLLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTEDKVEKIG 293
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS A AD+I++ ++ + T ED EL+ K+ I+++NK D
Sbjct: 294 VERSRAAITKADLILLVLNQSEPLTIEDRELITATTDKKR--------IIILNKTDLPNQ 345
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ + ++ + T +T +G+ DLE I K+ + N RQ L
Sbjct: 346 LDLDELQTLVRADEVIQTSILTSEGVTDLEAQIAKLFFGGIENSQSTVMITNARQIGLLN 405
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ +++L + S I +P+D ID+ + LG+I+G+ +E+++ +F +FC+GK
Sbjct: 406 QAQQSLDEVISGIAAGMPVDLVQIDMTNCWDKLGEITGDSAPDELITELFSQFCLGK 462
>gi|300857411|ref|YP_003782395.1| tRNA modification GTPase [Clostridium ljungdahlii DSM 13528]
gi|300437526|gb|ADK17293.1| predicted tRNA modification GTPase [Clostridium ljungdahlii DSM
13528]
Length = 460
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 172/476 (36%), Positives = 289/476 (60%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAA+ T +G G + I+R+SG ++ IV +FK K + +P S +
Sbjct: 5 FDTIAAVATVLG--EGGISIIRISGCDSLKIVNSIFKG-----KSNKNLIDMKPYS--MR 55
Query: 152 YGVVLDRH-GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++++ G ++DEVL M +P+SYT ED VE+ CHG V ++VL +++GA +A+
Sbjct: 56 YGYIVEKSTGELLDEVLVSFMKSPKSYTSEDTVEINCHGGVVATKKVLEEVIKSGARIAE 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I AK+ + +A+ G S + ++R K +E++
Sbjct: 116 PGEFTKRAFLNGRIDLSQAEAVIDIIRAKTELSMKSAVQQSTGKISKEINALREKLLEVI 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IEA +D+ ++++ + + V ++ + ++ + L TA K+++ GL IVG+PNV
Sbjct: 176 AHIEATVDYPEEDLEEMTSDKVSMRLQEILDEINHILSTAEEGKIVRDGLNTVIVGKPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN+ + RAIVT++ GTTRDVIE + + G+P+ ++DTAGIRET+D+VEKIGVE
Sbjct: 236 GKSSLLNSLIRENRAIVTDVPGTTRDVIEEYMNIDGIPIKVIDTAGIRETEDLVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++I+ + + + ED E++N ++ K I+++NKID +
Sbjct: 296 RSKQKIDEADLVILMLDSSEELDDEDKEIMNYVKDKK--------YIILLNKIDINDKIN 347
Query: 450 NEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ + N + + ++ TG+G+ ++T I + ++ G + N R E L+R
Sbjct: 348 --LDDICNLDSSCIIKTSIKTGKGLDKIKTCIKDLFFKGEVKPGD-LFITNARHKEGLIR 404
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
KE+ + +++ +D +ID+R+A LG+I+G+ + E+++ IF +FC+GK
Sbjct: 405 AKESCIEALGALKNTSAIDLASIDIRNAWDNLGKITGDTLEEDIIDKIFSQFCLGK 460
>gi|255283806|ref|ZP_05348361.1| tRNA modification GTPase TrmE [Bryantella formatexigens DSM 14469]
gi|255265689|gb|EET58894.1| tRNA modification GTPase TrmE [Marvinbryantia formatexigens DSM
14469]
Length = 459
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 184/478 (38%), Positives = 278/478 (58%), Gaps = 32/478 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T G +GIVR+SG A + R+++ KS S P SH ++YG
Sbjct: 7 TIAAIST--GMTSSGIGIVRISGTDAFAVADRMYRA------KSGKRLSDMP-SHTIQYG 57
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ D ++DEVL + M APRS+T ED VE+ CHG ++R+L +++GA LA+PGE
Sbjct: 58 FIAD-GSEIIDEVLVMLMRAPRSFTAEDTVEINCHGGVYAMKRILELAVKSGARLAEPGE 116
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGR+DLSQAE V +I AK+ A ++++ ++G ++ ++R K I + I
Sbjct: 117 FTKRAFLNGRIDLSQAEAVIDVIQAKNEYALKSSVSQLKGSVLKVIRALREKIIYEVAFI 176
Query: 274 EARLDFDDEMPPLNLNL------VMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
E+ LD P +++L + ++I M +++E + +A K ++ G++ IVG+P
Sbjct: 177 ESALD-----DPEHISLDEYPERLQEQIRPMKEELEKLIASAENGKRIREGIRTVIVGKP 231
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
N GKSSLLN ERAIVTEIAGTTRD +E + + GV + ++DTAGIR+T D VEKIG
Sbjct: 232 NAGKSSLLNVLLGEERAIVTEIAGTTRDTLEEEIQIHGVSLQIIDTAGIRDTQDTVEKIG 291
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VE++ A A AD+I+ A G D ++++I+ K +I+++NK+D
Sbjct: 292 VEKALAYAEDADLILYVADAATGLDENDIRIMDKIREKK--------VIVLLNKMDLEVV 343
Query: 448 ASNEWNKVGNSFNDHVF-TCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
S E ++ N V A GI LE I ++ +I + N RQ L
Sbjct: 344 TSEE--QIREILNKPVIPVSAKEESGIDILENTIKEMFYEGKISFNDEVYITNMRQKAAL 401
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
E+L R++ SI ++P DF++IDL A LG I+GE + E++++ IFG+FC+GK
Sbjct: 402 EAALESLCRVEESIAMQMPEDFFSIDLMSAYEELGNITGESVGEDLINEIFGRFCMGK 459
>gi|338811368|ref|ZP_08623586.1| tRNA modification GTPase TrmE [Acetonema longum DSM 6540]
gi|337276658|gb|EGO65077.1| tRNA modification GTPase TrmE [Acetonema longum DSM 6540]
Length = 470
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 186/473 (39%), Positives = 280/473 (59%), Gaps = 19/473 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI+AI T+ G G +GIVRLSGP A+ I G++F+ +K ++ ++ S+ YG
Sbjct: 15 TISAIATAPG--EGGIGIVRLSGPAALVIAGKLFRGIKDRRIQA-------IKSYQAAYG 65
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D G VDE L + M P SYT+EDVVE+QCHG V LRR+L ++AGA +A+PG
Sbjct: 66 NIVDPDTGQAVDEALVLVMRNPHSYTKEDVVEIQCHGGMVPLRRILELTVQAGARIAEPG 125
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGRLDLSQAE V +I AK+ A+ A+ + G S V +R + + ++
Sbjct: 126 EFTKRAFLNGRLDLSQAEAVIDVIRAKTDASLKMAVGQLNGAVSQKVQGLRQELLAMIAH 185
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
+EA +DF ++++ + ++ V ++ + V L TA+ ++L+ GL I+G+PNVGK
Sbjct: 186 LEAAIDFPEEDIDAVAVDRVQASVNQVLVTVNAMLATASTGQILREGLATVIIGKPNVGK 245
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLNA S RAIVT+I GTTRD+IE V + G+P+ +LDTAGIR+T D VE+IGVER+
Sbjct: 246 SSLLNALSGQNRAIVTDIPGTTRDIIEEYVNIRGIPLRVLDTAGIRDTADAVEQIGVERA 305
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
+A AD+I++ + A T+ED +++ + K I+++NK D
Sbjct: 306 KASLEQADLILLVLDASTPLTTEDRQVITFLTGRKG--------IVLVNKSDLPAVWDIA 357
Query: 452 WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKE 511
+ G + G G+ LE AI+ +V + G N R L + K
Sbjct: 358 EIQTGIGGTRIISLSIQQGSGLDRLEQAIVDMVYSGSLILGEGGIVNNVRHIMILRQAKS 417
Query: 512 ALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L ++I + +PLD +ID+R A LG+I+G+ + E+++ IF +FCIGK
Sbjct: 418 HLEAALATICQGMPLDCISIDIRAAWEKLGEITGDTLGEDIIDKIFSEFCIGK 470
>gi|251782601|ref|YP_002996904.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242391231|dbj|BAH81690.1| tRNA(5-carboxymethylaminomethyl-2-thiouridylate)synthase
[Streptococcus dysgalactiae subsp. equisimilis GGS_124]
Length = 458
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 275/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+ I VFK G + SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTDALAIAQSVFK----------GKNLEQVASHTIN 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G ++DEV+ MLAP+++TRE+VVE+ HG +L+ + GA +A+
Sbjct: 55 YGHIIDPKTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A A+ + G S L+ R + + +L
Sbjct: 115 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNIL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +EN L TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 235 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D LLN Q + + I+++NK D
Sbjct: 295 ERSKKALQEADLVLLVLNASEKLTDQDRALLNLSQDSNR--------IILLNKTDLEQKI 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +D++ +T Q I +E I ++ GL + A + N R
Sbjct: 347 ELEQLP-----DDYIPISVLTNQNINLIEDRINQLFFDNAGLVEQDA---TYLSNARHIS 398
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + + +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 399 LIEKAVQSLEAVNDGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458
>gi|126701303|ref|YP_001090200.1| tRNA modification GTPase TrmE [Clostridium difficile 630]
gi|255102894|ref|ZP_05331871.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-63q42]
gi|255308714|ref|ZP_05352885.1| tRNA modification GTPase TrmE [Clostridium difficile ATCC 43255]
gi|123362962|sp|Q181S7.1|MNME_CLOD6 RecName: Full=tRNA modification GTPase MnmE
gi|115252740|emb|CAJ70585.1| transfer RNA modification GTPase MnmE [Clostridium difficile 630]
Length = 459
Score = 304 bits (779), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 176/474 (37%), Positives = 271/474 (57%), Gaps = 23/474 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+ G G +GI+R+SG A+ + +FK + SG + YG
Sbjct: 6 TIAAIATAPG--EGGIGILRISGEKALKVAEEIFKSM-------SGKSIEEYNKRTLIYG 56
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
++D N++DEVL M P SYT EDV+E+ CHG + ++++L L LA+ GE
Sbjct: 57 NIVDNE-NIIDEVLLAYMKGPNSYTGEDVIEINCHGGFISVKKILELILSKDVRLAEAGE 115
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGR+DLSQAE V +I AK+ A + A ++G S + +R K E+L +
Sbjct: 116 FTKRAFLNGRIDLSQAEAVIDVIKAKTDIAHEVAQNQLEGSLSKKIRELRDKVTEILAHV 175
Query: 274 EARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
E +D+ ++++ + + +K + +D++ +TA K+L+ GL+ IVG+PNVGKS
Sbjct: 176 EVAIDYPEEDIEHITYQTLKEKTDELKKDIKKLYDTAESGKILREGLKTVIVGKPNVGKS 235
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLN+ RAIVT+I GTTRDVIE V + G+P+ ++DTAGIR+TDDIVEKIGVE+S+
Sbjct: 236 SLLNSILGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDIVEKIGVEKSK 295
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE- 451
AD+I+M + A + ED E+L +++ + I+++NK D E
Sbjct: 296 ESFTSADLIVMVLDASRKLSEEDIEILEKLKDKQ--------TIVLLNKNDLKQEIEEEK 347
Query: 452 -WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
V N N + A+ +GI++L+ I +V I N R + L +
Sbjct: 348 ILKYVEN--NSIIKISALQQEGIEELQDKIESMVYKGSIKNNSSLVVTNSRHKDALSKAY 405
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++ ++E+ +P DF +DL++ LG I+G+ ++E++L NIF FCIGK
Sbjct: 406 KSATDALIALEQSMPFDFVEVDLKNIWDYLGYINGDTVTEDLLDNIFHNFCIGK 459
>gi|377810531|ref|YP_005005752.1| tRNA modification GTPase TrmE [Pediococcus claussenii ATCC BAA-344]
gi|361057272|gb|AEV96076.1| tRNA modification GTPase TrmE [Pediococcus claussenii ATCC BAA-344]
Length = 464
Score = 304 bits (779), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 191/483 (39%), Positives = 278/483 (57%), Gaps = 30/483 (6%)
Query: 89 AGTFSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT 146
A F TIAAI T PPG + I+R+SG A+D ++++ K +K +G
Sbjct: 5 ATEFDTIAAIST----PPGEGGISIIRISGSKAIDAASKLYRG--KDLRKVAG------- 51
Query: 147 SHVVEYGVVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAG 205
+ + YG V D + VDEV+ M APR+YT+E+++E+ CHG V R+L+ L G
Sbjct: 52 -NTINYGHVYDPDSDEEVDEVMVSVMRAPRTYTKENIIEINCHGGIVATNRILQLILGLG 110
Query: 206 ATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAK 265
LA+PGEFT RAFLNGR+DLSQAE V LI AK+ + AL + G S L+ ++R
Sbjct: 111 VRLAKPGEFTERAFLNGRIDLSQAEAVMDLIRAKTDQSMKVALNQLDGNLSHLIANLRQD 170
Query: 266 CIELLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
+++L ++E +D+ D++ + L+ +K + +V+ L+TA K+L+ GL AI
Sbjct: 171 ILDVLAQVEVNIDYPEYDDVETMTTKLLKEKAVEVKSEVQQLLKTAKQGKVLRDGLATAI 230
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383
VG PNVGKSS+LN ++AIVT++AGTTRDVIE V V GVP+ L+DTAGI ET+D V
Sbjct: 231 VGHPNVGKSSILNLLLHEDKAIVTDVAGTTRDVIEEYVNVQGVPLKLVDTAGIHETNDKV 290
Query: 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443
EKIGVERS+ AD++I+ + + ED +LL + K+ I+V+NK D
Sbjct: 291 EKIGVERSQKALEVADLVILVLDSSVELRDEDRKLLKQTSGMKR--------IVVLNKSD 342
Query: 444 CAPSA-SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQR 501
NE +S + V + AV G +DLE I K+ I G V N R
Sbjct: 343 LTSKIDQNELQSYVDS-TEIVHSSAVNPLGTKDLEERIAKLFFAGSIENSGNNIMVTNAR 401
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
L +++EAL + S IE +P+D ID+ A LG+I+G+ +E+L +F +FC
Sbjct: 402 HIGLLKQSEEALNSVLSGIEMGMPVDLLQIDMTRAWDLLGEITGDSYQDELLDQLFSQFC 461
Query: 562 IGK 564
+GK
Sbjct: 462 LGK 464
>gi|421767278|ref|ZP_16204033.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Lactococcus garvieae
DCC43]
gi|407624198|gb|EKF50979.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Lactococcus garvieae
DCC43]
Length = 454
Score = 304 bits (779), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 184/475 (38%), Positives = 275/475 (57%), Gaps = 28/475 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG AV I +VFK G SH +
Sbjct: 6 FDTIAAISTPLG--EGAIAIVRLSGSDAVAIAKKVFK----------GKDLDTVASHTIN 53
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG + D+ +VDEV+ M AP+++TRED+VE+ HG + +L+ L +GA LA+P
Sbjct: 54 YGHIFDQE-RLVDEVMLSVMRAPKTFTREDLVEINTHGGIAVTQEILQLLLRSGARLAEP 112
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE+V LI AK+ AA+ A+ + G S+L+ ++R + +E L
Sbjct: 113 GEFTKRAFLNGRIDLAQAESVMDLIRAKTDQAANIAIKQLDGSLSNLINNIRQEILESLA 172
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + ++++K Q +E L TA K+L+ GL+ AI+GRPNV
Sbjct: 173 QVEVNIDYPEYDDVETMTSQMLLEKTAHFEQLLETLLATAKRGKILREGLRTAIIGRPNV 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+IAGTTRDVI + GVP+ L+DTAGIRET+D+VEKIGVE
Sbjct: 233 GKSSLLNQLLREEKAIVTDIAGTTRDVITEFANIGGVPLELIDTAGIRETEDVVEKIGVE 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ + A T++D ELL SS+ I+++NK D
Sbjct: 293 RSQKALEEADLVLLVLDASSPLTAKDVELL--------EVSSSSNRIVLLNKTDLPEKI- 343
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
E K+ D++ A+ + + +E I + +I A N R +
Sbjct: 344 -ELEKLP---EDYIRISALKNENLDAVEKQIRTLFFSGEIEAKDATTLSNARHIGLVEEA 399
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL + + LP+D +D+ LG+I+GE +E+++ +F +FC+GK
Sbjct: 400 LGALKEANNGLAMGLPVDLIQVDVTRCWQLLGEITGEAAPDELITQLFSQFCLGK 454
>gi|423088753|ref|ZP_17077127.1| tRNA modification GTPase TrmE [Clostridium difficile 70-100-2010]
gi|357559159|gb|EHJ40619.1| tRNA modification GTPase TrmE [Clostridium difficile 70-100-2010]
Length = 462
Score = 304 bits (778), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 176/474 (37%), Positives = 271/474 (57%), Gaps = 23/474 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+ G G +GI+R+SG A+ + +FK + SG + YG
Sbjct: 9 TIAAIATAPG--EGGIGILRISGEKALKVAEEIFKSM-------SGKSIEEYNKRTLIYG 59
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
++D N++DEVL M P SYT EDV+E+ CHG + ++++L L LA+ GE
Sbjct: 60 NIVDNE-NIIDEVLLAYMKGPNSYTGEDVIEINCHGGFISVKKILELILSKDVRLAEAGE 118
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGR+DLSQAE V +I AK+ A + A ++G S + +R K E+L +
Sbjct: 119 FTKRAFLNGRIDLSQAEAVIDVIKAKTDIAHEVAQNQLEGSLSKKIRELRDKVTEILAHV 178
Query: 274 EARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
E +D+ ++++ + + +K + +D++ +TA K+L+ GL+ IVG+PNVGKS
Sbjct: 179 EVAIDYPEEDIEHITYQTLKEKTDELKKDIKKLYDTAESGKILREGLKTVIVGKPNVGKS 238
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLN+ RAIVT+I GTTRDVIE V + G+P+ ++DTAGIR+TDDIVEKIGVE+S+
Sbjct: 239 SLLNSILGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDIVEKIGVEKSK 298
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE- 451
AD+I+M + A + ED E+L +++ + I+++NK D E
Sbjct: 299 ESFTSADLIVMVLDASRKLSEEDIEILEKLKDKQ--------TIVLLNKNDLKQEIEEEK 350
Query: 452 -WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
V N N + A+ +GI++L+ I +V I N R + L +
Sbjct: 351 ILKYVEN--NSIIKISALQQEGIEELQDKIESMVYKGSIKNNSSLVVTNSRHKDALSKAY 408
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++ ++E+ +P DF +DL++ LG I+G+ ++E++L NIF FCIGK
Sbjct: 409 KSATDALIALEQSMPFDFVEVDLKNIWDYLGYINGDTVTEDLLDNIFHNFCIGK 462
>gi|329925110|ref|ZP_08280054.1| tRNA modification GTPase TrmE [Paenibacillus sp. HGF5]
gi|328940229|gb|EGG36561.1| tRNA modification GTPase TrmE [Paenibacillus sp. HGF5]
Length = 458
Score = 304 bits (778), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 186/475 (39%), Positives = 281/475 (59%), Gaps = 25/475 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++G G + I+R+SGP +V V R+FK S + + SH V YG
Sbjct: 5 TIAAISTAVG--EGGIAIIRVSGPDSVQEVERIFK---------SKNKLTQVESHTVHYG 53
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D + G ++EVL M APRS+T EDVVE+ HG + ++RV+ L+ LA+PG
Sbjct: 54 HIVDPKTGENLEEVLVTVMRAPRSFTTEDVVEISAHGGVISVKRVMDLLLQLNIRLAEPG 113
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQAE V LI +KS A AL ++G S + +R +E L
Sbjct: 114 EFTKRAFLNGRIDLSQAEAVMDLIRSKSDRAFSVALKQVEGTLSRKINELRHTLVETLAH 173
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IE +D+ + ++ L + +K + +++ L+TA K+L+ G+ AIVGRPNVGK
Sbjct: 174 IEVNIDYPEHDVESLTSEFIKEKSKLVMGEIDKLLKTAQEGKILREGITTAIVGRPNVGK 233
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLN ++ RAIVT+I GTTRDVIE VT+ +P+ LLDTAGIRET D+VE+IGVERS
Sbjct: 234 SSLLNTLAQDNRAIVTDIPGTTRDVIEEFVTINNIPLKLLDTAGIRETMDVVEQIGVERS 293
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
+ AD+I++ ++A + ++ EL+ +I+ + I+++NK+D PS + +
Sbjct: 294 KHAVNEADLILLVLNASEPLHQDELELMEQIRGRQ--------CIVIMNKMDL-PS-NLD 343
Query: 452 WNKVGNSFNDHVFT-CAVTGQ-GIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+ + + D + +V Q GI LE AI + QI G + N R L ++
Sbjct: 344 LDILHRYYPDELIVPMSVKAQEGIDRLEEAISNLFFSGQIEGGDLTYVSNVRHIALLKKS 403
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K++L + ++ +P+D ID+R A L +I GE + + ++ IF +FC+GK
Sbjct: 404 KQSLQDAYDAADQLIPIDMIQIDVRMAWEQLSEILGEAVGDSLIDQIFSQFCLGK 458
>gi|168183721|ref|ZP_02618385.1| tRNA modification GTPase TrmE [Clostridium botulinum Bf]
gi|237797100|ref|YP_002864652.1| tRNA modification GTPase TrmE [Clostridium botulinum Ba4 str. 657]
gi|182673145|gb|EDT85106.1| tRNA modification GTPase TrmE [Clostridium botulinum Bf]
gi|229263227|gb|ACQ54260.1| tRNA modification GTPase TrmE [Clostridium botulinum Ba4 str. 657]
Length = 461
Score = 304 bits (778), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 168/476 (35%), Positives = 283/476 (59%), Gaps = 21/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAA+ T +G G + I+R+SG ++DIV +FK K +P S +
Sbjct: 4 FDTIAAVATPVG--EGGISIIRISGDKSLDIVSSIFKG-----KNDRSLDDIKPYS--MR 54
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++++ ++DEVL M PRS+T ED +E+ CHG + +++L+ +++GA LA+
Sbjct: 55 YGFIIEKESKEMIDEVLVSYMKGPRSFTAEDTLEINCHGGVIPTKKILKELIKSGARLAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I +K+ + +AL +G S + S+R + I+++
Sbjct: 115 PGEFTKRAFLNGRIDLSQAEAVIDIIRSKTDLSMKSALKQAEGTLSKEINSIRNRMIKII 174
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IEA +D+ +D++ + + + + ++N + + K+L+ GL IVG+PNV
Sbjct: 175 AHIEATVDYPEDDLEEITGQKIKVDLKEIINKIDNLISASEEGKILREGLNTVIVGKPNV 234
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA +AIVTEI GTTRDVIE + + G+P+ ++DTAGIRET+D+VEKIGVE
Sbjct: 235 GKSSLLNALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAGIRETEDVVEKIGVE 294
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S+ AD++I + ED E+++ I++ K I+++NK+D +
Sbjct: 295 KSKEKIDEADLVIFMLDLSREIDEEDIEIMDFIKNKK--------YIVLLNKLDLNKDLN 346
Query: 450 NEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + + + ++ +V G+ +L+ I + +I + N R E L+R
Sbjct: 347 EENHFIKELDSKYIIKTSVKNNSGLNELKECIKNLFFSGEIKS-DELIVTNARHQEALIR 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++E+ ++ ++ +E+ +D +ID+R+A LG+I+G+ + E ++ IF +FC+GK
Sbjct: 406 SRESCIQAIETLSDEISIDLASIDIRNAWKYLGEITGDTLDENIIDKIFSEFCLGK 461
>gi|148381580|ref|YP_001256121.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. ATCC
3502]
gi|153931640|ref|YP_001385957.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. ATCC
19397]
gi|153937169|ref|YP_001389364.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. Hall]
gi|168181110|ref|ZP_02615774.1| tRNA modification GTPase TrmE [Clostridium botulinum NCTC 2916]
gi|170756593|ref|YP_001783278.1| tRNA modification GTPase TrmE [Clostridium botulinum B1 str. Okra]
gi|226951095|ref|YP_002806186.1| tRNA modification GTPase TrmE [Clostridium botulinum A2 str. Kyoto]
gi|387819923|ref|YP_005680270.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Clostridium
botulinum H04402 065]
gi|421839554|ref|ZP_16273099.1| tRNA modification GTPase TrmE [Clostridium botulinum CFSAN001627]
gi|429243932|ref|ZP_19207415.1| tRNA modification GTPase TrmE [Clostridium botulinum CFSAN001628]
gi|166200473|sp|A7FPM0.1|MNME_CLOB1 RecName: Full=tRNA modification GTPase MnmE
gi|166200474|sp|A5I816.1|MNME_CLOBH RecName: Full=tRNA modification GTPase MnmE
gi|205829143|sp|B1IHR9.1|MNME_CLOBK RecName: Full=tRNA modification GTPase MnmE
gi|148291064|emb|CAL85201.1| probable tRNA modification GTPase [Clostridium botulinum A str.
ATCC 3502]
gi|152927684|gb|ABS33184.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. ATCC
19397]
gi|152933083|gb|ABS38582.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. Hall]
gi|169121805|gb|ACA45641.1| tRNA modification GTPase TrmE [Clostridium botulinum B1 str. Okra]
gi|182668135|gb|EDT80114.1| tRNA modification GTPase TrmE [Clostridium botulinum NCTC 2916]
gi|226841162|gb|ACO83828.1| tRNA modification GTPase TrmE [Clostridium botulinum A2 str. Kyoto]
gi|322807967|emb|CBZ05542.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Clostridium
botulinum H04402 065]
gi|409734075|gb|EKN35912.1| tRNA modification GTPase TrmE [Clostridium botulinum CFSAN001627]
gi|428759060|gb|EKX81450.1| tRNA modification GTPase TrmE [Clostridium botulinum CFSAN001628]
Length = 461
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 168/476 (35%), Positives = 283/476 (59%), Gaps = 21/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAA+ T +G G + I+R+SG ++DIV +FK K +P S +
Sbjct: 4 FDTIAAVATPVG--EGGISIIRISGDKSLDIVSSIFKG-----KNDRTLDDIKPYS--MR 54
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++++ ++DEVL M PRS+T ED +E+ CHG + +++L+ +++GA LA+
Sbjct: 55 YGFIIEKESKEMIDEVLVSYMKGPRSFTAEDTLEINCHGGVIPTKKILKELIKSGARLAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I +K+ + +AL +G S + S+R + I+++
Sbjct: 115 PGEFTKRAFLNGRIDLSQAEAVIDIIRSKTDLSMKSALKQAEGTLSKEINSIRNRMIKII 174
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IEA +D+ +D++ + + + + ++N + + K+L+ GL IVG+PNV
Sbjct: 175 AHIEATVDYPEDDLEEITGQKIKVDLKEIINKIDNLISASEEGKILREGLNTVIVGKPNV 234
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA +AIVTEI GTTRDVIE + + G+P+ ++DTAGIRET+D+VEKIGVE
Sbjct: 235 GKSSLLNALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAGIRETEDVVEKIGVE 294
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S+ AD++I + ED E+++ I++ K I+++NK+D +
Sbjct: 295 KSKEKIDEADLVIFMLDLSRKIDEEDIEIMDFIKNKK--------YIVLLNKLDLNKDLN 346
Query: 450 NEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + + + ++ +V G+ +L+ I + +I + N R E L+R
Sbjct: 347 EENHFIKELDSKYIIKTSVKNNSGLNELKECIKNLFFSGEIKS-DELIVTNARHQEALIR 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++E+ ++ ++ +E+ +D +ID+R+A LG+I+G+ + E ++ IF +FC+GK
Sbjct: 406 SRESCIQAIETLSDEISIDLASIDIRNAWKYLGEITGDTLDENIIDKIFSEFCLGK 461
>gi|169832370|ref|YP_001718352.1| tRNA modification GTPase TrmE [Candidatus Desulforudis audaxviator
MP104C]
gi|205829147|sp|B1I6S2.1|MNME_DESAP RecName: Full=tRNA modification GTPase MnmE
gi|169639214|gb|ACA60720.1| tRNA modification GTPase TrmE [Candidatus Desulforudis audaxviator
MP104C]
Length = 461
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 180/449 (40%), Positives = 266/449 (59%), Gaps = 18/449 (4%)
Query: 119 AVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAVPMLAPRSYT 178
A+ I G+VF+PV +K ++ G G H V+ G G VDEVL M AP+SYT
Sbjct: 28 ALKIAGQVFRPVGEKDWRA-GPGFRMYYGHAVDPGT-----GETVDEVLVSVMRAPKSYT 81
Query: 179 REDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISA 238
REDVVE+ HG + L+R+L+ L+ GA LA PGEFT RAFLNGRLDL QAE V +I A
Sbjct: 82 REDVVEINGHGGVLPLQRILKIVLDCGARLAGPGEFTRRAFLNGRLDLVQAEAVLDVIRA 141
Query: 239 KSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDF--DDEMPPLNLNLVMDKIH 296
++ ++ AL ++GG S + ++R +++L EIEA +DF ++++P L + ++
Sbjct: 142 RTGSSLQVALGQLRGGLSERIGAMREALLQVLAEIEASIDFPEEEDVPETRLEALAGQLA 201
Query: 297 AMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDV 356
A+ LE A ++ + GL +AIVG+PNVGKSSLLNA + +RAIVT++ GTTRDV
Sbjct: 202 ALEAGCVELLEGAEAGRVYRDGLGVAIVGKPNVGKSSLLNALLREKRAIVTDVPGTTRDV 261
Query: 357 IEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDS 416
IE +V + G+PV LLDTAG+RET D VE++GV R+ GAD++++ + A G ED
Sbjct: 262 IEETVNIRGLPVRLLDTAGLRETADTVERLGVARTRDAVAGADMVLVVLDAASGLEDEDR 321
Query: 417 ELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVT-GQGIQD 475
+L + P++++INK+D AP A + + V + V A+ G+G+ +
Sbjct: 322 RVL--------ALARGKPLVVLINKVDLAP-AGIDPDAVRALVDGPVLMAAIIEGRGLNE 372
Query: 476 LETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRD 535
LE I +V ++ N R L + L +S++ +PL+ ID+R+
Sbjct: 373 LEETIAGLVLGGRVTGHHTVLISNVRHQHALEQAGRYLEEARSALVSGMPLEMAVIDIRN 432
Query: 536 AALALGQISGEDISEEVLSNIFGKFCIGK 564
A +LG I+GE E++L IF FCIGK
Sbjct: 433 ALDSLGDITGETAGEDLLDRIFSHFCIGK 461
>gi|187777372|ref|ZP_02993845.1| hypothetical protein CLOSPO_00928 [Clostridium sporogenes ATCC
15579]
gi|187774300|gb|EDU38102.1| tRNA modification GTPase TrmE [Clostridium sporogenes ATCC 15579]
Length = 461
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 170/476 (35%), Positives = 282/476 (59%), Gaps = 21/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAA+ T +G G + I+R+SG ++DIV +F+ K +P S +
Sbjct: 4 FDTIAAVATPLG--EGGISIIRISGDKSLDIVSSIFRG-----KNDRLLDDIKPYS--MR 54
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++++ ++DEVL M PRS+T ED +E+ CHG + +++L+ +++GA LA+
Sbjct: 55 YGFIIEKESKEIIDEVLVSYMKGPRSFTAEDTLEINCHGGVIPTKKILKELIKSGARLAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I +K+ + +AL +G S + S+R K I+++
Sbjct: 115 PGEFTKRAFLNGRIDLSQAEAVIDIIRSKTDLSMKSALKQAEGTLSKEINSIRNKMIKII 174
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IEA +D+ +D++ + + + + ++N + + K+L+ GL IVG+PNV
Sbjct: 175 AHIEATVDYPEDDLEEITGQKIKVDLKEIINKIDNLISASEEGKILREGLNTVIVGKPNV 234
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA +AIVTEI GTTRDVIE + + G+P+ ++DTAGIRET+D+VEKIGVE
Sbjct: 235 GKSSLLNALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAGIRETEDVVEKIGVE 294
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S+ AD++I + ED E++N I++ K I+++NK D +
Sbjct: 295 KSKEKIAEADLVIFMLDLSRKIDEEDIEIMNFIKNKK--------YIVLLNKSDLNKDLN 346
Query: 450 NEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + + + ++ +V G+ +L+ I + +I + N R E L+R
Sbjct: 347 EENHFIKGLDSKYIIRTSVKNNSGLNELKECIKDLFFSGEIKS-DEIIVTNARHQEALIR 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+KE+ ++ ++ +E+ +D +ID+R+A LG+I+G+ + E ++ IF +FC+GK
Sbjct: 406 SKESCIQAIETLSDEISIDLASIDIRNAWKYLGEITGDTLDENIIDKIFSEFCLGK 461
>gi|323141443|ref|ZP_08076333.1| tRNA modification GTPase TrmE [Phascolarctobacterium succinatutens
YIT 12067]
gi|322414099|gb|EFY04928.1| tRNA modification GTPase TrmE [Phascolarctobacterium succinatutens
YIT 12067]
Length = 459
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 191/477 (40%), Positives = 283/477 (59%), Gaps = 28/477 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI+A+ T++G GAVGIVR+SGP A+ + +FK +SG + + YG
Sbjct: 5 TISAVTTALG--EGAVGIVRISGPKALAVGETLFKA-------ASGKALGAYPVNTLAYG 55
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
V D G++VDEVLAV M APRSYT EDVVE+QCHG L+++L+ AGA A+ GE
Sbjct: 56 HVYDTDGSLVDEVLAVYMRAPRSYTAEDVVEIQCHGGVQPLQKILQLTFAAGARPAEAGE 115
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGR+DL+QAE V +I ++S A+ A QG + + S+R + ++++ +
Sbjct: 116 FTKRAFLNGRIDLTQAEAVMDIIRSRSEASLKLAARQQQGQLAGELRSLRKQLVDIVVNL 175
Query: 274 EARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
EA +D+ ++++ + V + + + +E+ L A+ K+L+ GL+ AIVGRPNVGKS
Sbjct: 176 EAVIDYPEEDIEDVTYGRVQESLSTVCSGIEHLLAHAHTGKILREGLRTAIVGRPNVGKS 235
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNA + ERAIV++ AGTTRDVIE + + GVP+ L DTAGIR TDD VEKIGVE+S
Sbjct: 236 SLLNALLREERAIVSQYAGTTRDVIEEQLLLDGVPLVLADTAGIRATDDFVEKIGVEKSR 295
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
+ ++++I + DG T ED +L + P ++++NK D +
Sbjct: 296 QLLADSELVICVIDGSDGLTDEDEAILE--------AAAGKPCVVIVNKSDLPQQV--DL 345
Query: 453 NKVGNSFN-DHVFT-CAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
++ F D V T A T GI+ + V + G + N RQ E+L+R
Sbjct: 346 AQLRERFGADKVMTLSAKTLVGIEAFTAWLKSYVYGSKGTLGDGAYIQNARQ-ERLLR-- 402
Query: 511 EALVRLKS---SIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
EAL L+ + ++ LP D ID+R A LG+I+G+ + +E+++ IF +FCIGK
Sbjct: 403 EALAGLQDAEFAAQDYLPYDCIVIDVRSAIDLLGEITGDTVQDEIINEIFERFCIGK 459
>gi|418006523|ref|ZP_12646472.1| GTPase/tRNA-U34 5-formylation enzyme [Lactobacillus casei UW1]
gi|410543430|gb|EKQ17798.1| GTPase/tRNA-U34 5-formylation enzyme [Lactobacillus casei UW1]
Length = 462
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 185/478 (38%), Positives = 278/478 (58%), Gaps = 28/478 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
+ TIAAI T PPG A+ IVRLSG AV +VFK G + SH
Sbjct: 8 YDTIAAIST----PPGEGAISIVRLSGETAVATANQVFK----------GKDLSQVKSHT 53
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D G ++DEV+ MLAP+++TREDVVE+ CHG V R+L+ L GA +
Sbjct: 54 IHYGHIVDPESGELIDEVMVSVMLAPKTFTREDVVEINCHGGIVATNRILQLLLGEGARM 113
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DL++AE+V LI AK+ A A+ + G +L+ +R + +E
Sbjct: 114 AEPGEFTKRAFLNGRIDLTEAESVRDLIRAKTDRAMQVAVNQLDGNLHTLIKRLRQEILE 173
Query: 269 LLTEIEARLDFDD-EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
+L ++E +D+ + + + ++++K + + + N L TA+ K+L+ GL AIVGRP
Sbjct: 174 VLAQVEVNIDYPEYDTDEMTTKMLLEKAQTVQKAISNLLSTASQGKVLREGLATAIVGRP 233
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN ++AIVT++AGTTRDV+E V V GVP+ L+DTAGI +T D VEKIG
Sbjct: 234 NVGKSSLLNHMLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTDKVEKIG 293
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD+I++ + + T ED +L+ + +NKK I+V+NK D P+
Sbjct: 294 VERSRQAITQADLILLVLDQSEPLTDEDKQLI-QATANKKR-------IIVLNKQDL-PA 344
Query: 448 ASNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ + D + A+ T G+ L+ I K+ + N RQ L
Sbjct: 345 QLDTTALLKLVSPDEIIKTAIPTSAGMDALDERIAKLFFGGIENSQTTVMVSNARQIGLL 404
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++L + + I +P+D ID+ A LG+I+GE +E+++ +F +FC+GK
Sbjct: 405 RQANKSLDAVIAGIHAGMPIDLVQIDMTAAWDKLGEITGESAPDELITQLFSQFCLGK 462
>gi|260685218|ref|YP_003216503.1| tRNA modification GTPase TrmE [Clostridium difficile CD196]
gi|260688877|ref|YP_003220011.1| tRNA modification GTPase TrmE [Clostridium difficile R20291]
gi|260211381|emb|CBA67036.1| putative tRNA modification GTPase [Clostridium difficile CD196]
gi|260214894|emb|CBE07700.1| putative tRNA modification GTPase [Clostridium difficile R20291]
Length = 462
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 176/474 (37%), Positives = 271/474 (57%), Gaps = 23/474 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+ G G +GI+R+SG A+ + +FK + SG + YG
Sbjct: 9 TIAAIATAPG--EGGIGILRISGERALKVAEEIFKSM-------SGKSIEEYNKRTLIYG 59
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+LD N++DEVL M P SYT EDV+E+ CHG + ++++L L LA+ GE
Sbjct: 60 NILDNE-NIIDEVLLAYMKGPNSYTGEDVIEINCHGGFISVKKILELILSKDVRLAEAGE 118
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGR+DLSQAE V +I AK+ A + A ++G S + +R K E+L +
Sbjct: 119 FTKRAFLNGRIDLSQAEAVIDVIKAKTDIAHEVAQNQLEGSLSKKIRELRDKVTEILAHV 178
Query: 274 EARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
E +D+ ++++ + + +K + ++++ +TA K+L+ GL+ IVG+PNVGKS
Sbjct: 179 EVAIDYPEEDIEHITYQTLKEKTDELKKEIKKLYDTAESGKILREGLKTVIVGKPNVGKS 238
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLN+ RAIVT+I GTTRDVIE V + G+P+ ++DTAGIR+TDDIVEKIGVE+S+
Sbjct: 239 SLLNSILGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDIVEKIGVEKSK 298
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE- 451
AD+I+M + A + ED E+L +++ + I+++NK D E
Sbjct: 299 ESFTSADLIVMVLDASRKLSEEDIEILEKLKDKQ--------TIVLLNKNDLKQEIEEEK 350
Query: 452 -WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
V N N + A+ +GI++L+ I +V I N R + L +
Sbjct: 351 ILKYVEN--NSIIKISALQQEGIEELQDKIESMVYKGSIKNNSSLVVTNSRHKDALSKAY 408
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++ ++E+ +P DF +DL++ LG I+G+ ++E++L NIF FCIGK
Sbjct: 409 KSATDALIALEQSMPFDFVEVDLKNIWDYLGYINGDTVTEDLLDNIFHNFCIGK 462
>gi|347522523|ref|YP_004780094.1| thiophene and furan oxidation protein [Lactococcus garvieae ATCC
49156]
gi|385833907|ref|YP_005871682.1| thiophene and furan oxidation protein [Lactococcus garvieae Lg2]
gi|420143096|ref|ZP_14650599.1| Thiophene and furan oxidation protein [Lactococcus garvieae IPLA
31405]
gi|343181091|dbj|BAK59430.1| thiophene and furan oxidation protein [Lactococcus garvieae ATCC
49156]
gi|343183060|dbj|BAK61398.1| thiophene and furan oxidation protein [Lactococcus garvieae Lg2]
gi|391856901|gb|EIT67435.1| Thiophene and furan oxidation protein [Lactococcus garvieae IPLA
31405]
Length = 454
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 182/475 (38%), Positives = 275/475 (57%), Gaps = 28/475 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG A+ I +VF+ G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIAIVRLSGSDALSIAKKVFQ----------GKDLDKVASHTIN 53
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG + D+ +VDEV+ M AP+++TRED+VE+ HG + +L+ L +GA LA+P
Sbjct: 54 YGHIFDKD-RLVDEVMLSVMKAPKTFTREDLVEINTHGGIAVTQEILQLLLRSGARLAEP 112
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE+V LI AK+ AA+ A+ + G S+L+ ++R + +E L
Sbjct: 113 GEFTKRAFLNGRIDLAQAESVMDLIRAKTDQAANIAVKQLDGSLSNLINNIRQEILESLA 172
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + ++++K Q +E L TA K+L+ GL+ AI+GRPNV
Sbjct: 173 QVEVNIDYPEYDDVETMTSQMLLEKTAHFEQLLETLLATAKRGKILREGLRTAIIGRPNV 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+IAGTTRDVI + GVP+ L+DTAGIRET+D+VEKIGVE
Sbjct: 233 GKSSLLNQLLREEKAIVTDIAGTTRDVITEFANIGGVPLELIDTAGIRETEDVVEKIGVE 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ + A T +D ELL S+T I+++NK D
Sbjct: 293 RSQKALEEADLVLLVLDASSPLTPKDLELL--------ELSSATNRIILLNKTDLPEKI- 343
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
E K+ F + A+ + + +E I + +I A N R + +
Sbjct: 344 -ELEKLPEDF---IRISALKNENLDAVEKQIRALFFSGEIEAKDATTLSNARHIGLVEQA 399
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+AL + LP+D +D+ LG+I+GE +E+++ +F +FC+GK
Sbjct: 400 LDALKEANRGLAMGLPVDLIQVDITRCWQLLGEITGEAAPDELITQLFSQFCLGK 454
>gi|427412761|ref|ZP_18902953.1| tRNA modification GTPase TrmE [Veillonella ratti ACS-216-V-Col6b]
gi|425715577|gb|EKU78563.1| tRNA modification GTPase TrmE [Veillonella ratti ACS-216-V-Col6b]
Length = 462
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 178/479 (37%), Positives = 280/479 (58%), Gaps = 24/479 (5%)
Query: 91 TFSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSH 148
T TIAAI T PPG VGI+R+SG +IV VFK K + RP +
Sbjct: 3 TEDTIAAIAT----PPGIGGVGIIRVSGTRCFEIVNSVFKA------KGTVPLEKRP-NR 51
Query: 149 VVEYGVVLD--RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGA 206
++YG ++D + ++DEVL + M P+S+T EDV+E+QCHG + +R +L+ L GA
Sbjct: 52 TIQYGHIIDPQKQDEILDEVLVLIMRGPQSFTAEDVIEVQCHGGIIVVREILKVLLRQGA 111
Query: 207 TLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKC 266
LA+PGEFT RAFLNGR+DL+QAE V +I AKS + A+ + G + ++ ++R +
Sbjct: 112 RLAEPGEFTKRAFLNGRIDLTQAEAVIDIIEAKSEQSLAVAVKQLDGTLAGMIRAIREQL 171
Query: 267 IELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVG 325
IEL++ +E +D+ ++++ L + D++ + ++ L TAN +LL+ G+ AIVG
Sbjct: 172 IELISHLEVAIDYPEEDIEELTMEETADRLQPILDNINKLLATANRGRLLRDGIMTAIVG 231
Query: 326 RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEK 385
RPN GKSSL+NA + RAIVT+I GTTRD IE ++T+ G+PV L+DTAGIRETDDIVEK
Sbjct: 232 RPNAGKSSLMNALLRENRAIVTDIPGTTRDSIEEAITIEGIPVRLIDTAGIRETDDIVEK 291
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445
+GV+R++ A +++ + A + +E+ +L +++ K+T I+ +NK D
Sbjct: 292 LGVDRAKDYLEKAQIVVCVIDASEPINAEEEAILR--EASHKNT------IVFLNKADKG 343
Query: 446 PSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+ + K F A G+G+ L A+ ++V + N R
Sbjct: 344 AVITADTIKAYGQFAAIAPISAANGEGMDVLADAVKELVYGGTVQNESSAMLSNVRHITL 403
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + K + + ++IE LP+DF D+R A LG I+G+ + E ++ +F +FC+GK
Sbjct: 404 MEQAKSQIEQSLNNIEAGLPVDFVVTDVRSAWEQLGDITGDSLRESMVDELFSRFCLGK 462
>gi|15674224|ref|NP_268399.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. lactis
Il1403]
gi|385831866|ref|YP_005869679.1| tRNA modification GTPase [Lactococcus lactis subsp. lactis CV56]
gi|418038277|ref|ZP_12676612.1| hypothetical protein LLCRE1631_01419 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|14195270|sp|Q9CDH8.1|MNME_LACLA RecName: Full=tRNA modification GTPase MnmE
gi|12725311|gb|AAK06340.1|AE006453_4 GTP-binding protein ThdF [Lactococcus lactis subsp. lactis Il1403]
gi|326407874|gb|ADZ64945.1| tRNA modification GTPase [Lactococcus lactis subsp. lactis CV56]
gi|354693489|gb|EHE93251.1| hypothetical protein LLCRE1631_01419 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
Length = 455
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 181/475 (38%), Positives = 274/475 (57%), Gaps = 28/475 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG A+ I V+K G + SH +
Sbjct: 7 FDTIAAISTPLG--EGAIAIVRLSGTDALKIAQSVYK----------GKNLTQVASHTIN 54
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG + + +VDEV+ M AP+++TRED+VE+ HG + +L+ L GA LA+P
Sbjct: 55 YGHIFEEK-RLVDEVMVSVMRAPKTFTREDIVEINTHGGIAVTQEILQLLLRNGARLAEP 113
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE+V LI AK+ AA+ A+ + G S ++ ++R + +E L
Sbjct: 114 GEFTKRAFLNGRIDLAQAESVMDLIRAKTDKAANIAVKQLDGSLSKMINNIRQEILESLA 173
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + ++++K Q +EN L TA K+L+ GL+ AI+GRPNV
Sbjct: 174 QVEVNIDYPEYDDVETMTSQMLLEKTAHFEQLLENLLSTAKRGKILREGLKTAIIGRPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+IAGTTRDVI + GVP+ L+DTAGIRETDD+VE IGVE
Sbjct: 234 GKSSLLNQLLREEKAIVTDIAGTTRDVITEFANIGGVPLELVDTAGIRETDDLVEAIGVE 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ + A + T +D ELL +++ + I+++NK D P
Sbjct: 294 RSKKALAEADLVLLVLDASNELTDKDLELLELSKNSNR--------IVLLNKTDL-PEKI 344
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+ G D + A+ + + +E I +I +I A N R +
Sbjct: 345 DSTQISG----DFIRISALKNENLNAVEEKINQIFFAGEIEAKDATVLSNARHISIVEEA 400
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+AL S + LP+D +D+ LG+I+GE +E+++ +F +FC+GK
Sbjct: 401 LKALKEANSGLALGLPVDLIQVDVTRCWQLLGEITGEAAPDELITQLFSQFCLGK 455
>gi|254977337|ref|ZP_05273809.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-66c26]
gi|255094668|ref|ZP_05324146.1| tRNA modification GTPase TrmE [Clostridium difficile CIP 107932]
gi|255316421|ref|ZP_05358004.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-76w55]
gi|255519081|ref|ZP_05386757.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-97b34]
gi|255652264|ref|ZP_05399166.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-37x79]
gi|306521979|ref|ZP_07408326.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-32g58]
gi|384362905|ref|YP_006200757.1| tRNA modification GTPase TrmE [Clostridium difficile BI1]
Length = 459
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 176/474 (37%), Positives = 271/474 (57%), Gaps = 23/474 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+ G G +GI+R+SG A+ + +FK + SG + YG
Sbjct: 6 TIAAIATAPG--EGGIGILRISGERALKVAEEIFKSM-------SGKSIEEYNKRTLIYG 56
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+LD N++DEVL M P SYT EDV+E+ CHG + ++++L L LA+ GE
Sbjct: 57 NILDNE-NIIDEVLLAYMKGPNSYTGEDVIEINCHGGFISVKKILELILSKDVRLAEAGE 115
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGR+DLSQAE V +I AK+ A + A ++G S + +R K E+L +
Sbjct: 116 FTKRAFLNGRIDLSQAEAVIDVIKAKTDIAHEVAQNQLEGSLSKKIRELRDKVTEILAHV 175
Query: 274 EARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
E +D+ ++++ + + +K + ++++ +TA K+L+ GL+ IVG+PNVGKS
Sbjct: 176 EVAIDYPEEDIEHITYQTLKEKTDELKKEIKKLYDTAESGKILREGLKTVIVGKPNVGKS 235
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLN+ RAIVT+I GTTRDVIE V + G+P+ ++DTAGIR+TDDIVEKIGVE+S+
Sbjct: 236 SLLNSILGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDIVEKIGVEKSK 295
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE- 451
AD+I+M + A + ED E+L +++ + I+++NK D E
Sbjct: 296 ESFTSADLIVMVLDASRKLSEEDIEILEKLKDKQ--------TIVLLNKNDLKQEIEEEK 347
Query: 452 -WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
V N N + A+ +GI++L+ I +V I N R + L +
Sbjct: 348 ILKYVEN--NSIIKISALQQEGIEELQDKIESMVYKGSIKNNSSLVVTNSRHKDALSKAY 405
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++ ++E+ +P DF +DL++ LG I+G+ ++E++L NIF FCIGK
Sbjct: 406 KSATDALIALEQSMPFDFVEVDLKNIWDYLGYINGDTVTEDLLDNIFHNFCIGK 459
>gi|170758742|ref|YP_001788985.1| tRNA modification GTPase TrmE [Clostridium botulinum A3 str. Loch
Maree]
gi|205829144|sp|B1KUB2.1|MNME_CLOBM RecName: Full=tRNA modification GTPase MnmE
gi|169405731|gb|ACA54142.1| tRNA modification GTPase TrmE [Clostridium botulinum A3 str. Loch
Maree]
Length = 461
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 167/476 (35%), Positives = 282/476 (59%), Gaps = 21/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI A+ T +G G + I+R+SG ++DIV +FK K +P S +
Sbjct: 4 FDTITAVATPVG--EGGISIIRISGDKSLDIVSSIFKG-----KNDRSLDDIKPYS--MR 54
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++++ ++DEVL M PRS+T ED +E+ CHG + +++L+ +++GA LA+
Sbjct: 55 YGFIIEKESKEIIDEVLVSYMKGPRSFTAEDTLEINCHGGVIPTKKILKELIKSGARLAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I +K+ + +AL +G S + S+R + I+++
Sbjct: 115 PGEFTKRAFLNGRIDLSQAEAVIDIIRSKTDLSMKSALKQAEGTLSKEINSIRNRMIKII 174
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IEA +D+ +D++ + + + + ++N + + K+L+ GL IVG+PNV
Sbjct: 175 AHIEATVDYPEDDLEEITGQKIKVDLKEIINKIDNLISASEEGKILREGLNTVIVGKPNV 234
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA +AIVTEI GTTRDVIE + + G+P+ ++DTAGIRET+D+VEKIGVE
Sbjct: 235 GKSSLLNALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAGIRETEDVVEKIGVE 294
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S+ AD++I + ED E+++ I++ K I+++NK+D +
Sbjct: 295 KSKEKIDEADLVIFMLDLSRKIDEEDIEIMDFIKNKK--------YIVLLNKLDLNKDLN 346
Query: 450 NEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + + + ++ +V G+ +L+ I + +I + N R E L+R
Sbjct: 347 EENHFIKELDSKYIIKTSVKNNSGLNELKECIKNLFFSGEIKS-DELIVTNARHQEALIR 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++E+ ++ ++ +E+ +D +ID+R+A LG+I+G+ + E ++ IF +FC+GK
Sbjct: 406 SRESCIQAIETLSDEISIDLASIDIRNAWKYLGEITGDTLDENIIDKIFSEFCLGK 461
>gi|19746040|ref|NP_607176.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS8232]
gi|209559376|ref|YP_002285848.1| tRNA modification GTPase TrmE [Streptococcus pyogenes NZ131]
gi|386317136|ref|YP_006013300.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|408401759|ref|YP_006859723.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Streptococcus dysgalactiae subsp. equisimilis RE378]
gi|417751337|ref|ZP_12399648.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
gi|417927145|ref|ZP_12570533.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|25009494|sp|Q8P161.1|MNME_STRP8 RecName: Full=tRNA modification GTPase MnmE
gi|166234824|sp|Q1JH22.1|MNME_STRPD RecName: Full=tRNA modification GTPase MnmE
gi|19748208|gb|AAL97675.1| putative thiophene degradation protein F [Streptococcus pyogenes
MGAS8232]
gi|94543924|gb|ABF33972.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Streptococcus pyogenes MGAS10270]
gi|209540577|gb|ACI61153.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Streptococcus
pyogenes NZ131]
gi|323127423|gb|ADX24720.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|333772881|gb|EGL49683.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
gi|340765019|gb|EGR87545.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|407967988|dbj|BAM61226.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Streptococcus dysgalactiae subsp. equisimilis RE378]
Length = 458
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 274/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+ I VFK G + SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTDALAIAQSVFK----------GKNLEQVASHTIN 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G ++DEV+ MLAP+++TRE+VVE+ HG +L+ + GA +A+
Sbjct: 55 YGHIIDPKTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A A+ + G S L+ R + + L
Sbjct: 115 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +EN L TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 235 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D LLN Q + + I+++NK D
Sbjct: 295 ERSKKALQEADLVLLVLNASEKLTDQDRALLNLSQDSNR--------IILLNKTDLEQKI 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +D++ +T Q I +E I ++ GL + A + N R
Sbjct: 347 ELEQLP-----DDYIPISVLTNQNINLIEDRINQLFFDNAGLVEQDA---TYLSNARHIS 398
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + + +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 399 LIEKAVQSLEAVNDGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458
>gi|28209869|ref|NP_780813.1| tRNA modification GTPase TrmE [Clostridium tetani E88]
gi|32171803|sp|Q899S2.1|MNME_CLOTE RecName: Full=tRNA modification GTPase MnmE
gi|28202304|gb|AAO34750.1| thiophene and furan oxidation protein thdF [Clostridium tetani E88]
Length = 459
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 175/475 (36%), Positives = 283/475 (59%), Gaps = 21/475 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G G + I+R+SG ++ IV ++FK +G + ++
Sbjct: 4 FDTIAAISTVLG--EGGISIIRISGDKSLAIVNKLFKA-------KNGKDILDMKPYTMK 54
Query: 152 YGVVLDRH-GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++++ N++DEVL M APRS+T ED VE+ CHG +++ + ++AG +A+
Sbjct: 55 YGHIIEQDTKNILDEVLISYMKAPRSFTAEDTVEINCHGGVTPTKKIFQEVIKAGVRVAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I +K+ + +A++ G S + +R IE +
Sbjct: 115 PGEFTKRAFLNGRIDLTQAEAVIDIIRSKTELSMKSAVSQSIGKVSEEINVLRENLIETI 174
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IEA +D+ ++++ + + V +KI + +++E L+T+ K+++ GL + IVG+PNV
Sbjct: 175 AHIEATVDYPEEDLEEITSSQVQEKIEKIIEELERLLDTSEEGKIIREGLDVVIVGKPNV 234
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA +RAIVTEI GTTRDVIE + + G+P+ ++DTAGIRET+D+VEKIGVE
Sbjct: 235 GKSSLLNALLSEKRAIVTEIPGTTRDVIEEYINLDGIPIKIIDTAGIRETEDLVEKIGVE 294
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++I+ + + + ED E++ I+ K I ++NK D S
Sbjct: 295 RSKEKINEADLVILVLDSSNKLNDEDYEIIEYIKDKK--------YITLLNKSDL-ESKI 345
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
N+ + + + A G G++DL+ I + I N R E L+R
Sbjct: 346 NKSDLEDLKLYNIIEISAKMGFGLEDLKEYIKDLFFKGDIQTDS-IIITNTRHKEALIRA 404
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
KE+ ++E L +D +ID+++A L+LG+I+G+ + E+++ IF +FC+GK
Sbjct: 405 KESCNTALKALENTLAIDLASIDIKNAWLSLGEITGDTLEEDIIDKIFSEFCLGK 459
>gi|422734751|ref|ZP_16791034.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1341]
gi|315168440|gb|EFU12457.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1341]
Length = 465
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 187/480 (38%), Positives = 283/480 (58%), Gaps = 29/480 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVRLSG AV I +V++ K K PT H
Sbjct: 8 FDTIAAIST----PPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKV-------PT-HT 55
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D ++ ++DEV+ M AP+++TREDVVE+ CHG V + ++L+ L GA +
Sbjct: 56 IHYGHIVDPQNDQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLREGARM 115
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL + G S+L+ S+R + +
Sbjct: 116 AEPGEFTKRAFLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILN 175
Query: 269 LLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L ++E +D+ D++ L L+++K + ++ L TA K+L+ GL AI+G
Sbjct: 176 TLAQVEVNIDYPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGP 235
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN + E+AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+DIVE+I
Sbjct: 236 PNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERI 295
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS +D+I++ ++ + T ED +LL + K+ ++++NK+D
Sbjct: 296 GVERSRKALADSDLILLVLNQSEELTEEDRQLLEATKGLKR--------VILLNKMDLPT 347
Query: 447 SAS-NEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCE 504
NE ++ + + + + +V + G+ LE I + Q + N R
Sbjct: 348 KLDPNELQELVPA--EEILSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIA 405
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + +L + + IE +P+D ID+ LG+I G+ + +E+++ +F +FC+GK
Sbjct: 406 LLDQAALSLQEVINGIEAGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465
>gi|429204210|ref|ZP_19195501.1| tRNA modification GTPase TrmE [Lactobacillus saerimneri 30a]
gi|428147416|gb|EKW99641.1| tRNA modification GTPase TrmE [Lactobacillus saerimneri 30a]
Length = 462
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 184/479 (38%), Positives = 271/479 (56%), Gaps = 28/479 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVR+SG AV I +VF+ G + SH
Sbjct: 6 FDTIAAIST----PPGEGAISIVRMSGENAVKIATKVFQ----------GKDLTQVASHT 51
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D +DEV+ + P++YTRED++E+ CHG V +L+ L+ GA L
Sbjct: 52 INYGHIIDPASRREIDEVMVSVLRGPKTYTREDIIEINCHGGIVSTNEILQLLLQNGARL 111
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFL+GR+DL+QAE+V LI AK+ + AL + G + L+ ++R ++
Sbjct: 112 AEPGEFTKRAFLHGRIDLTQAESVMDLIRAKTDRSMKVALNQLDGNLAHLINNLRQDILD 171
Query: 269 LLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L ++E +D+ D++ L ++ +K A+ ++ +TA K+L+ GL AIVGR
Sbjct: 172 VLAQVEVNIDYPEYDDVETLTTKMLKEKALAVRDRIKQLEQTAKQGKILREGLATAIVGR 231
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRETDD VEKI
Sbjct: 232 PNVGKSSLLNHLLHEDKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETDDKVEKI 291
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS AD++++ ++A + T+ED ELL K+ I+V+NK D
Sbjct: 292 GVERSRQAIDQADLVMLLLNASEPLTAEDQELLAATADKKR--------IVVLNKTDLPQ 343
Query: 447 SASN-EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
E + + + GI LE I K+ + N R
Sbjct: 344 QLDQAELQTYLKPAEEVIALSVLANAGIDQLEEQIAKLFFGGIENSQTTVIVTNARHVAL 403
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + +++L + IE +P+D ID+ A +LG+I+G+ +E+L +F +FC+GK
Sbjct: 404 LNKAEQSLTAVLQGIEAGMPVDLCQIDMTAAWDSLGEITGDSYQDELLDQLFSQFCLGK 462
>gi|373494057|ref|ZP_09584663.1| tRNA modification GTPase TrmE [Eubacterium infirmum F0142]
gi|371969191|gb|EHO86642.1| tRNA modification GTPase TrmE [Eubacterium infirmum F0142]
Length = 469
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 173/484 (35%), Positives = 285/484 (58%), Gaps = 29/484 (5%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
STIAAI TS G +GI+R+SG +++I+ ++F P K + + + + Y
Sbjct: 3 STIAAIATSPG--ESGIGIIRISGEKSLNILNKIFYPASKNL-------APKDNNRQLIY 53
Query: 153 GVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
G + D G+++DEVLAV AP++YT EDVVE+ CHG V L L L GA LA+PG
Sbjct: 54 GHIKDELGHIIDEVLAVYFPAPKTYTAEDVVEIDCHGGIVPLSNTLSLVLRCGANLAEPG 113
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGRLDL+QAE V +I++K+ ++ D A+ ++G FS + +R + ++L +
Sbjct: 114 EFTKRAFLNGRLDLTQAEAVIDVINSKTNSSFDVAMEQLRGRFSKEINEIRKEITDVLVD 173
Query: 273 IEARLDFDDEMPPLNL-NLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
I +D+ DE L L + + +++ ++ + V+ +++++ ++L+ GL +AI+GRPNVGK
Sbjct: 174 IAVNIDYPDEDIELILYDKLENELRSIKKKVDYLIDSSDTGRILREGLNVAIIGRPNVGK 233
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSL+NA + RAIVTEI GTTRD IE + V G+PV L+DTAGIR TDD++E+IG+++S
Sbjct: 234 SSLMNAMLRESRAIVTEIPGTTRDTIEELINVRGIPVNLIDTAGIRSTDDVIEQIGIDKS 293
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
+ AD++I + ++ED ++LN++ +K ++++ NK D S
Sbjct: 294 KKSLESADLVIFMIDLTSEISTEDYDILNQVDKSK--------LLILFNKADKTARISEA 345
Query: 452 WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQI---------PAGGRRWAV--NQ 500
++ T + + ++E AI + G + + AG ++ + N
Sbjct: 346 DIASFARGVRYMITSVNDSKSVDEIENAIFEKAGGNLLLGKESETDKLAGSQKSNIVTNA 405
Query: 501 RQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKF 560
R L R +L ++ +PL+F ID+R+A LG I+G+ + ++V+ +F +F
Sbjct: 406 RHKNMLERATTSLGEAINAASGGIPLEFLEIDIRNAYEELGFITGDSVQDDVIDEVFSRF 465
Query: 561 CIGK 564
C+GK
Sbjct: 466 CLGK 469
>gi|153937917|ref|YP_001392999.1| tRNA modification GTPase TrmE [Clostridium botulinum F str.
Langeland]
gi|166200475|sp|A7GJN9.1|MNME_CLOBL RecName: Full=tRNA modification GTPase MnmE
gi|152933813|gb|ABS39311.1| tRNA modification GTPase TrmE [Clostridium botulinum F str.
Langeland]
Length = 461
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 168/476 (35%), Positives = 282/476 (59%), Gaps = 21/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAA+ T +G G + I+R+SG ++DIV +FK K +P S +
Sbjct: 4 FDTIAAVATPVG--EGGISIIRISGDKSLDIVSSIFKG-----KNDRTLDDIKPYS--MR 54
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++++ ++DEVL M PRS+T ED +E+ CHG + +++L+ +++GA LA+
Sbjct: 55 YGFIIEKESKEMIDEVLVSYMKGPRSFTAEDTLEINCHGGVIPTKKILKELIKSGARLAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I +K+ + +AL +G S + S+R + I+++
Sbjct: 115 PGEFTKRAFLNGRIDLSQAEAVIDIIRSKTDLSMKSALKQAEGTLSKEINSIRNRMIKII 174
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IEA +D+ +D++ + + + + ++N + + K+L+ GL IVG+PNV
Sbjct: 175 AHIEATVDYPEDDLEEITGQKIKVDLKEIINKIDNLISASEEGKILREGLNTVIVGKPNV 234
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA +AIVTEI GTTRDVIE + + G+P ++DTAGIRET+D+VEKIGVE
Sbjct: 235 GKSSLLNALINENKAIVTEIPGTTRDVIEEYINIDGIPTKIVDTAGIRETEDVVEKIGVE 294
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S+ AD++I + ED E+++ I++ K I+++NK+D +
Sbjct: 295 KSKEKIDEADLVIFMLDLSKKIDEEDIEIMDFIKNKK--------YIVLLNKLDLNKDLN 346
Query: 450 NEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + + + ++ +V G+ +L+ I + +I + N R E L+R
Sbjct: 347 EENHFIKELDSKYIIKTSVKNNSGLNELKECIKNLFFSGEIKS-DELTVTNARHQEALIR 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++E+ ++ ++ +E+ +D +ID+R+A LG+I+G+ + E ++ IF +FC+GK
Sbjct: 406 SRESCIQAIETLSDEISIDLASIDIRNAWKYLGEITGDTLDENIIDKIFSEFCLGK 461
>gi|139473816|ref|YP_001128532.1| tRNA modification GTPase TrmE [Streptococcus pyogenes str.
Manfredo]
gi|166234826|sp|A2REM7.1|MNME_STRPG RecName: Full=tRNA modification GTPase MnmE
gi|134272063|emb|CAM30302.1| tRNA modification GTPase TrmE [Streptococcus pyogenes str.
Manfredo]
Length = 458
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 274/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+ I VFK G + SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTDALAIAQSVFK----------GKSLEQVASHTIN 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G ++DEV+ MLAP+++TRE+VVE+ HG +L+ + GA +A+
Sbjct: 55 YGHIIDPKTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A A+ + G S L+ R + + L
Sbjct: 115 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +EN L TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 235 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D LLN Q + + I+++NK D
Sbjct: 295 ERSKKALQEADLVLLVLNASEKLTDQDRALLNLSQDSNR--------IILLNKTDLEQKI 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +D++ +T Q I +E I ++ GL + A + N R
Sbjct: 347 ELEQLP-----DDYIPISVLTNQNINLIEDRINQLFFDNAGLVEQDA---TYLSNARHIS 398
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + + +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 399 LIEKAVQSLEAVNDGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458
>gi|326801518|ref|YP_004319337.1| tRNA modification GTPase mnmE [Sphingobacterium sp. 21]
gi|326552282|gb|ADZ80667.1| tRNA modification GTPase mnmE [Sphingobacterium sp. 21]
Length = 456
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 185/479 (38%), Positives = 275/479 (57%), Gaps = 26/479 (5%)
Query: 88 KAGTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTS 147
+A + TI A+ T G GA+ ++RLSGP A++IV VFK G + S
Sbjct: 2 EAESADTIVALATPTGS--GAIAVIRLSGPQAIEIVNGVFK----------GKDLSKQAS 49
Query: 148 HVVEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
H V +G + D G ++DEVLA +AP SYTRE+VVE+ HGS+ + +++ + GA
Sbjct: 50 HTVHFGTIRDEDGKILDEVLASIFIAPHSYTRENVVEVSTHGSKYIVESIIKLFIRKGAR 109
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
A+PGEFTLRAFL+G +DLSQAE V LI++ S A+ A+ ++GGFS+ + +R + I
Sbjct: 110 AAKPGEFTLRAFLHGGMDLSQAEAVADLIASNSAASHQVAMQQMRGGFSNELKQLREQLI 169
Query: 268 ELLTEIEARLDFDDE-MPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+ IE LDF +E + N + + D I + + + + + +L++G+ I I G+
Sbjct: 170 HFASMIELELDFSEEDVEFANRSQLKDLILEIIKVLHRLILSFEQGNVLKNGVPIVIAGK 229
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKS+LLNA ERAIV++IAGTTRD IE + + GV +DTAGIR+T+DI+E
Sbjct: 230 PNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDEINIQGVSFRFIDTAGIRDTEDIIEAK 289
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID-CA 445
GVER+ A ++I V VD E S IQ TP +LVINK D +
Sbjct: 290 GVERTREKMKKARLVIYLVDPVDDAFEEVS-----IQV-ADLILLRTPFVLVINKKDLLS 343
Query: 446 PSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
P A ++ + + VF A +G G++ L+ ++ V L I N R E
Sbjct: 344 PDALAQYEPL-----NPVFISAKSGDGVEALKEELLNQVSLRNINVDD-VMVTNIRHVEA 397
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L++T+ +L ++ I+ + DF +D+R A LG+I+G+ +E++L NIF KFCIGK
Sbjct: 398 LLKTQASLEKVLYGIDNPITSDFLAMDIRQALHHLGEITGQVSTEDLLDNIFSKFCIGK 456
>gi|260101882|ref|ZP_05752119.1| tRNA modification GTPase TrmE [Lactobacillus helveticus DSM 20075]
gi|417012035|ref|ZP_11946401.1| tRNA modification GTPase TrmE [Lactobacillus helveticus MTCC 5463]
gi|260084310|gb|EEW68430.1| tRNA modification GTPase TrmE [Lactobacillus helveticus DSM 20075]
gi|328463992|gb|EGF35490.1| tRNA modification GTPase TrmE [Lactobacillus helveticus MTCC 5463]
Length = 461
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 176/476 (36%), Positives = 275/476 (57%), Gaps = 25/476 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T IG G + IVR+SG AV I VFK G+ + +H +
Sbjct: 8 FDTIAAISTPIG--EGGISIVRMSGEDAVKIANEVFK----------GADLTKVPTHTIH 55
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + +DE + + AP+++TRED+VE+ CHG V +L+ L GA +A
Sbjct: 56 YGHIVDPDTDKTIDESMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQLLLSHGARMAD 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V ++ AK+ A A+ + GG + ++R + ++ L
Sbjct: 116 PGEFTKRAFVNGRIDLTQAESVMDIVRAKTDKARQVAVGQLAGGLLHKIQAMRQEILDTL 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+E +D+ + + + + D ++ + ++ L+TA K+L++GL AIVGRPNV
Sbjct: 176 ANVEVNIDYPEYDADTVTAKQMTDTAKSVIKKIDRLLKTAQEGKILRNGLATAIVGRPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ++S++AIVT++AGTTRD +E V+V GVP+ L+DTAGI TDD VEKIGVE
Sbjct: 236 GKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTDDKVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ + A T+ED L+ + K+ I+V+NK D +
Sbjct: 296 RSKKALDRADLVLLLIDASQELTAEDKALIEETKDKKR--------IIVLNKSDLGQKIT 347
Query: 450 -NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+E K S D + T + + + LE I K+ + + NQRQ L +
Sbjct: 348 VDEMKKQTGS--DVILTSILKEKNLDKLEELINKLFFAGIENSNDQVMVTNQRQTSLLTK 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+ L + ++E+ +P+D ID A LG+I+GE +E+++ +F +FC+GK
Sbjct: 406 AKKELQDVVQAVEDGIPIDIAQIDFTGAWDTLGEITGESAPDELVTQLFSQFCLGK 461
>gi|317472412|ref|ZP_07931737.1| tRNA modification GTPase TrmE [Anaerostipes sp. 3_2_56FAA]
gi|316900132|gb|EFV22121.1| tRNA modification GTPase TrmE [Anaerostipes sp. 3_2_56FAA]
Length = 457
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 176/474 (37%), Positives = 277/474 (58%), Gaps = 24/474 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T + +GI+R+SGP A+DI VF+P ++K K + ++ YG
Sbjct: 5 TIAAIATPL--SSSGIGIIRISGPEAIDIASEVFRPKREKDIK-------KAATYTAHYG 55
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ + G +DE + + M P SYT EDV E+ CHG V ++++L +EAGA A+PGE
Sbjct: 56 HAV-KDGKDIDECILLIMKGPHSYTAEDVAEINCHGGVVVMKKILSCIIEAGARPAEPGE 114
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGR+DLS+AE V LI +K+ A + +L ++G S + S+R + + + I
Sbjct: 115 FTKRAFLNGRIDLSRAEAVMDLIHSKNEFAMETSLKQLKGSLSEKIRSLRKEIVHSVAFI 174
Query: 274 EARLDFDDE---MPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
E+ LD D E + + L + HA D++ L++++ ++L+ G+ AIVG+PN G
Sbjct: 175 ESALD-DPEHYSVDGFSEQLKVQVEHA-RDDIQKYLDSSDNGRILKEGIHTAIVGKPNAG 232
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSS+LN ERAIVT+IAGTTRD +E S+ + G+P+ ++DTAGIR+TDD+VEKIGV++
Sbjct: 233 KSSILNVLLGKERAIVTDIAGTTRDTLEESIQINGIPLNVIDTAGIRDTDDVVEKIGVDK 292
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
+ + AD+++ V T ED E++ + + +I+++NK D S
Sbjct: 293 ARDSVIKADLVLYVVDTSVPLTKEDEEIMKLLNGKQ--------VIVLLNKSDLETKVS- 343
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
E + F + V A + G++DL I + ++ + N R + L K
Sbjct: 344 ESEFLDRGFQNIVPVSAKSLYGLEDLYERINDLFFNGRVSFNDEVYITNMRHKKALANAK 403
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L + SIE+ +P DF++IDL DA LG I GE + E++++ IF +FC+GK
Sbjct: 404 DSLDLVLKSIEDRMPEDFFSIDLMDAYEELGYIIGESVGEDLVNEIFAEFCMGK 457
>gi|417985313|ref|ZP_12625899.1| GTPase/tRNA-U34 5-formylation enzyme [Lactobacillus casei 32G]
gi|418006732|ref|ZP_12646650.1| GTPase/tRNA-U34 5-formylation enzyme [Lactobacillus casei UW4]
gi|410528743|gb|EKQ03590.1| GTPase/tRNA-U34 5-formylation enzyme [Lactobacillus casei 32G]
gi|410551032|gb|EKQ25110.1| GTPase/tRNA-U34 5-formylation enzyme [Lactobacillus casei UW4]
Length = 462
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 184/480 (38%), Positives = 278/480 (57%), Gaps = 32/480 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
+ TIAAI T PPG A+ IVRLSG AV +VFK G + SH
Sbjct: 8 YDTIAAIST----PPGEGAISIVRLSGETAVATANQVFK----------GKDLSQVKSHT 53
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D G ++DEV+ MLAP+++TREDVVE+ CHG V R+L+ L GA +
Sbjct: 54 IHYGHIVDPESGELIDEVMVSVMLAPKTFTREDVVEINCHGGIVATNRILQLLLGEGARM 113
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DL++AE+V LI AK+ A A+ + G +L+ +R + +E
Sbjct: 114 AEPGEFTKRAFLNGRIDLTEAESVMDLIRAKTDRAMQVAVNQLDGNLHTLIKRLRQEILE 173
Query: 269 LLTEIEARLDFDD-EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
+L ++E +D+ + + + ++++K + + + N L TA+ K+L+ GL AIVGRP
Sbjct: 174 VLAQVEVNIDYPEYDTDEMTTKMLLEKAQTVQKAISNLLSTASQGKVLREGLATAIVGRP 233
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN ++AIVT++AGTTRDV+E V V GVP+ L+DTAGI +T D VEKIG
Sbjct: 234 NVGKSSLLNHMLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTDKVEKIG 293
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD+I++ + + T ED +L+ + K+ I+V+NK D P+
Sbjct: 294 VERSRQAITQADLILLVLDQSEPLTDEDKQLIQATANKKR--------IIVLNKQDL-PA 344
Query: 448 ASNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIV--GLHQIPAGGRRWAVNQRQCE 504
+ + D + A+ T G+ L+ I K+ G+ + N RQ
Sbjct: 345 QLDTTALLKLVSPDEIIKTAIPTSAGMDALDERIAKLFFGGIEN--SQTTVMVSNARQIG 402
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + ++L + + I +P+D ID+ A LG+I+GE +E+++ +F +FC+GK
Sbjct: 403 LLRQANKSLDAVIAGIHAGMPIDLVQIDMTAAWDKLGEITGESAPDELITQLFSQFCLGK 462
>gi|78044593|ref|YP_358878.1| tRNA modification GTPase TrmE [Carboxydothermus hydrogenoformans
Z-2901]
gi|123577255|sp|Q3AG56.1|MNME_CARHZ RecName: Full=tRNA modification GTPase MnmE
gi|77996708|gb|ABB15607.1| tRNA modification GTPase TrmE [Carboxydothermus hydrogenoformans
Z-2901]
Length = 461
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 192/477 (40%), Positives = 268/477 (56%), Gaps = 26/477 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T +G G +GIVR+SGP A++ V VF P + S S P S + YG
Sbjct: 5 TIAAISTPLG--EGGIGIVRVSGPGAIEAVKNVFIP------RQSKDLSKVP-SFTLHYG 55
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D G +VDEVL M AP+SYT EDVVE+ CHG V + +VL L+ G LA+PG
Sbjct: 56 KIVDPADGKIVDEVLVSVMRAPKSYTGEDVVEINCHGGIVAVEKVLELILKQGIRLAEPG 115
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQAE V +I AK+ A+ A + G + +VR K I +L
Sbjct: 116 EFTKRAFLNGRIDLSQAEAVIDIIRAKTEASLKLAGRQLSGELREKINAVRQKIINILAF 175
Query: 273 IEARLDFD----DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
IE +D+ DE+ P + I + DV L + ++L+ G+ I G+PN
Sbjct: 176 IEVSIDYPEYEFDEVTP---ETALKNIDEIINDVRRLLSSYERGRILREGITAVIAGKPN 232
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLNA + +RAIVT+I GTTRDVIE + + G+PV ++DTAGIRET+D+VEK+GV
Sbjct: 233 VGKSSLLNALLRKKRAIVTDIPGTTRDVIEDYLNLKGIPVKIVDTAGIRETEDLVEKLGV 292
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
E++ ADV + V G +D ++L+ I +K +LVINKID
Sbjct: 293 EKTREYLNQADVTLFVVDVSIGIDEDDEKILSLINKDKS--------LLVINKIDLLQGK 344
Query: 449 SN-EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
N E V + V A +G++ LE + +I+ Q G N R L
Sbjct: 345 VNFEQYAVKTGIKNFVPFSARNFEGLEILENKLYEILIPEQEGEGESALISNLRHKNYLE 404
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ +L+ K SI P+D IDL +A LG I+G+ + +E+++ IF +FC+GK
Sbjct: 405 KALNSLLSAKESIASGEPVDLVAIDLNEALRELGAITGDALGDEIINEIFSQFCVGK 461
>gi|403516040|ref|YP_006656860.1| tRNA modification GTPase TrmE [Lactobacillus helveticus R0052]
gi|403081478|gb|AFR23056.1| tRNA modification GTPase TrmE [Lactobacillus helveticus R0052]
Length = 461
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 176/476 (36%), Positives = 276/476 (57%), Gaps = 25/476 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T IG G + IVR+SG AV I VFK G+ + +H +
Sbjct: 8 FDTIAAISTPIG--EGGISIVRMSGEDAVKIANEVFK----------GADLTKVPTHTIH 55
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + +DE + + AP+++TRED+VE+ CHG V +L+ L GA +A
Sbjct: 56 YGHIVDPDTDKTIDESMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQLLLSHGARMAD 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V ++ AK+ A A+ + GG + ++R + ++ L
Sbjct: 116 PGEFTKRAFVNGRIDLTQAESVMDIVRAKTDKARQVAVGQLAGGLLHKIQAMRQEILDTL 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+E +D+ + + + + D ++ + ++ L+TA K+L++GL AIVGRPNV
Sbjct: 176 ANVEVNIDYPEYDADAVTAKQMADTAKSVIKKIDRLLKTAQEGKILRNGLATAIVGRPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ++S++AIVT++AGTTRD +E V+V GVP+ L+DTAGI TDD VEKIGVE
Sbjct: 236 GKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTDDKVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ + A T+ED L+ ++ K+ I+V+NK D +
Sbjct: 296 RSKKALDRADLVLLLIDASQELTAEDKALIEETKNKKR--------IIVLNKSDLGQKIT 347
Query: 450 -NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+E K S D + T + + + LE I K+ + + NQRQ L +
Sbjct: 348 VDEMKKQTGS--DVILTSILKEKNLDKLEELINKLFFAGIENSNDQVMVTNQRQTSLLTK 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+ L + ++E+ +P+D ID A LG+I+GE +E+++ +F +FC+GK
Sbjct: 406 AKKELQDVVQAVEDGIPVDIAQIDFTGAWDTLGEITGESAPDELVTQLFSQFCLGK 461
>gi|167748063|ref|ZP_02420190.1| hypothetical protein ANACAC_02807 [Anaerostipes caccae DSM 14662]
gi|167652055|gb|EDR96184.1| tRNA modification GTPase TrmE [Anaerostipes caccae DSM 14662]
Length = 472
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 176/474 (37%), Positives = 277/474 (58%), Gaps = 24/474 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T + +GI+R+SGP A+DI VF+P ++K K + ++ YG
Sbjct: 20 TIAAIATPLSS--SGIGIIRISGPEAIDIASEVFRPKREKDIK-------KAATYTAHYG 70
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ + G +DE + + M P SYT EDV E+ CHG V ++++L +EAGA A+PGE
Sbjct: 71 HAV-KDGKDIDECILLIMKGPHSYTAEDVAEINCHGGVVVMKKILSCIIEAGARPAEPGE 129
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGR+DLS+AE V LI +K+ A + +L ++G S + S+R + + + I
Sbjct: 130 FTKRAFLNGRIDLSRAEAVMDLIHSKNEFAMETSLKQLKGSLSEKIRSLRKEIVHSVAFI 189
Query: 274 EARLDFDDE---MPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
E+ LD D E + + L + HA D++ L++++ ++L+ G+ AIVG+PN G
Sbjct: 190 ESALD-DPEHYSVDGFSEQLKVQVEHA-RDDIQKYLDSSDNGRILKEGIHTAIVGKPNAG 247
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSS+LN ERAIVT+IAGTTRD +E S+ + G+P+ ++DTAGIR+TDD+VEKIGV++
Sbjct: 248 KSSILNVLLGEERAIVTDIAGTTRDTLEESIQINGIPLNVIDTAGIRDTDDVVEKIGVDK 307
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
+ + AD+++ V T ED E++ + + +I+++NK D S
Sbjct: 308 ARDSVIKADLVLYVVDTSVPLTKEDEEIMKLLNGKQ--------VIVLLNKSDLETKVS- 358
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
E + F + V A + G++DL I + ++ + N R + L K
Sbjct: 359 ESEFLDRGFQNIVPVSAKSLYGLEDLYERINDLFFNGRVSFNDEVYITNMRHKKALANAK 418
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L + SIE+ +P DF++IDL DA LG I GE + E++++ IF +FC+GK
Sbjct: 419 DSLDLVLKSIEDRMPEDFFSIDLMDAYEELGYIIGESVGEDLVNEIFAEFCMGK 472
>gi|161508218|ref|YP_001578189.1| tRNA modification GTPase TrmE [Lactobacillus helveticus DPC 4571]
gi|205415770|sp|A8YTQ7.1|MNME_LACH4 RecName: Full=tRNA modification GTPase MnmE
gi|160349207|gb|ABX27881.1| Thiophene and furan oxidation protein [Lactobacillus helveticus DPC
4571]
Length = 461
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 176/476 (36%), Positives = 275/476 (57%), Gaps = 25/476 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T IG G + IVR+SG AV I VFK G+ + +H +
Sbjct: 8 FDTIAAISTPIG--EGGISIVRMSGEDAVKIANEVFK----------GADLTKVPTHTIH 55
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + +DE + + AP+++TRED+VE+ CHG V +L+ L GA +A
Sbjct: 56 YGHIVDPDTDKTIDESMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQLLLSHGARMAD 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V ++ AK+ A A+ + GG + ++R + ++ L
Sbjct: 116 PGEFTKRAFVNGRIDLTQAESVMDIVRAKTDKARQVAVGQLAGGLLHKIQAMRQEILDTL 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+E +D+ + + + + D ++ + ++ L+TA K+L++GL AIVGRPNV
Sbjct: 176 ANVEVNIDYPEYDADTVTAKQMADTAKSVIKKIDRLLKTAQEGKILRNGLATAIVGRPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ++S++AIVT++AGTTRD +E V+V GVP+ L+DTAGI TDD VEKIGVE
Sbjct: 236 GKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTDDKVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ + A T+ED L+ + K+ I+V+NK D +
Sbjct: 296 RSKKALDRADLVLLLIDASQELTAEDKALIEETKDKKR--------IIVLNKSDLGQKIT 347
Query: 450 -NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+E K S D + T + + + LE I K+ + + NQRQ L +
Sbjct: 348 VDEMKKQTGS--DVILTSILKEKNLDKLEELINKLFFAGIENSNDQVMVTNQRQTSLLTK 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+ L + ++E+ +P+D ID A LG+I+GE +E+++ +F +FC+GK
Sbjct: 406 AKKELQDVVQAVEDGIPIDIAQIDFTGAWDTLGEITGESAPDELVTQLFSQFCLGK 461
>gi|116496320|ref|YP_808054.1| tRNA modification GTPase TrmE [Lactobacillus casei ATCC 334]
gi|191639864|ref|YP_001989030.1| tRNA modification GTPase TrmE [Lactobacillus casei BL23]
gi|227533513|ref|ZP_03963562.1| tRNA modification GTPase TrmE [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|239630797|ref|ZP_04673828.1| tRNA modification GTPase TrmE [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301067924|ref|YP_003789947.1| tRNA modification GTPase, TrmE [Lactobacillus casei str. Zhang]
gi|385821651|ref|YP_005858038.1| TRNA modification GTPase TrmE:Small GTP-binding protein
[Lactobacillus casei LC2W]
gi|385824835|ref|YP_005861177.1| TRNA modification GTPase TrmE:Small GTP-binding protein
domain:GTP-binding [Lactobacillus casei BD-II]
gi|417982110|ref|ZP_12622774.1| GTPase/tRNA-U34 5-formylation enzyme [Lactobacillus casei 12A]
gi|417991172|ref|ZP_12631619.1| GTPase/tRNA-U34 5-formylation enzyme [Lactobacillus casei A2-362]
gi|417994676|ref|ZP_12634991.1| GTPase/tRNA-U34 5-formylation enzyme [Lactobacillus casei M36]
gi|417997754|ref|ZP_12637990.1| GTPase/tRNA-U34 5-formylation enzyme [Lactobacillus casei T71499]
gi|418000630|ref|ZP_12640810.1| GTPase/tRNA-U34 5-formylation enzyme [Lactobacillus casei UCD174]
gi|418012235|ref|ZP_12651974.1| GTPase/tRNA-U34 5-formylation enzyme [Lactobacillus casei Lc-10]
gi|418013776|ref|ZP_12653408.1| GTPase/tRNA-U34 5-formylation enzyme [Lactobacillus casei Lpc-37]
gi|122262283|sp|Q033L0.1|MNME_LACC3 RecName: Full=tRNA modification GTPase MnmE
gi|116106470|gb|ABJ71612.1| tRNA modification GTPase trmE [Lactobacillus casei ATCC 334]
gi|190714166|emb|CAQ68172.1| tRNA modification GTPase trmE [Lactobacillus casei BL23]
gi|227188842|gb|EEI68909.1| tRNA modification GTPase TrmE [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|239527080|gb|EEQ66081.1| tRNA modification GTPase TrmE [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300440331|gb|ADK20097.1| tRNA modification GTPase, TrmE [Lactobacillus casei str. Zhang]
gi|327383978|gb|AEA55454.1| TRNA modification GTPase TrmE:Small GTP-binding protein
[Lactobacillus casei LC2W]
gi|327387162|gb|AEA58636.1| TRNA modification GTPase TrmE:Small GTP-binding protein
domain:GTP-binding [Lactobacillus casei BD-II]
gi|410521513|gb|EKP96478.1| GTPase/tRNA-U34 5-formylation enzyme [Lactobacillus casei 12A]
gi|410532336|gb|EKQ07045.1| GTPase/tRNA-U34 5-formylation enzyme [Lactobacillus casei A2-362]
gi|410540715|gb|EKQ15226.1| GTPase/tRNA-U34 5-formylation enzyme [Lactobacillus casei M36]
gi|410542402|gb|EKQ16850.1| GTPase/tRNA-U34 5-formylation enzyme [Lactobacillus casei T71499]
gi|410549832|gb|EKQ23985.1| GTPase/tRNA-U34 5-formylation enzyme [Lactobacillus casei UCD174]
gi|410550839|gb|EKQ24924.1| GTPase/tRNA-U34 5-formylation enzyme [Lactobacillus casei Lc-10]
gi|410555471|gb|EKQ29414.1| GTPase/tRNA-U34 5-formylation enzyme [Lactobacillus casei Lpc-37]
Length = 462
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 184/480 (38%), Positives = 278/480 (57%), Gaps = 32/480 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
+ TIAAI T PPG A+ IVRLSG AV +VFK G + SH
Sbjct: 8 YDTIAAIST----PPGEGAISIVRLSGETAVATANQVFK----------GKDLSQVKSHT 53
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D G ++DEV+ MLAP+++TREDVVE+ CHG V R+L+ L GA +
Sbjct: 54 IHYGHIVDPESGELIDEVMVSVMLAPKTFTREDVVEINCHGGIVATNRILQLLLGEGARM 113
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DL++AE+V LI AK+ A A+ + G +L+ +R + +E
Sbjct: 114 AEPGEFTKRAFLNGRIDLTEAESVMDLIRAKTDRAMQVAVNQLDGNLHTLIKRLRQEILE 173
Query: 269 LLTEIEARLDFDD-EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
+L ++E +D+ + + + ++++K + + + N L TA+ K+L+ GL AIVGRP
Sbjct: 174 VLAQVEVNIDYPEYDTDEMTTKMLLEKAQTVQKAISNLLSTASQGKVLREGLATAIVGRP 233
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN ++AIVT++AGTTRDV+E V V GVP+ L+DTAGI +T D VEKIG
Sbjct: 234 NVGKSSLLNHMLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTDKVEKIG 293
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD+I++ + + T ED +L+ + K+ I+V+NK D P+
Sbjct: 294 VERSRQAITQADLILLVLDQSEPLTDEDEQLIQATANKKR--------IIVLNKQDL-PA 344
Query: 448 ASNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIV--GLHQIPAGGRRWAVNQRQCE 504
+ + D + A+ T G+ L+ I K+ G+ + N RQ
Sbjct: 345 QLDTTALLKLVSPDEIIKTAIPTSAGMDALDERIAKLFFGGIEN--SQTTVMVSNARQIG 402
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + ++L + + I +P+D ID+ A LG+I+GE +E+++ +F +FC+GK
Sbjct: 403 LLRQANKSLDAVIAGIHAGMPIDLVQIDMTAAWDKLGEITGESAPDELITQLFSQFCLGK 462
>gi|383479966|ref|YP_005388860.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS15252]
gi|383493882|ref|YP_005411558.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS1882]
gi|378927956|gb|AFC66162.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS15252]
gi|378929610|gb|AFC68027.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS1882]
Length = 458
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 274/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+ I VFK G + SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTDALAIAQSVFK----------GKNLEQVASHTIN 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G ++DEV+ MLAP+++TRE+VVE+ HG +L+ + GA +A+
Sbjct: 55 YGHIIDPKTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQGARIAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A A+ + G S L+ R + + L
Sbjct: 115 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +EN L TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 235 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D LLN Q + + I+++NK D
Sbjct: 295 ERSKKALQEADLVLLVLNASEKLTDQDRALLNLSQGSNR--------IILLNKTDLEQKI 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +D++ +T Q I +E I ++ GL + A + N R
Sbjct: 347 ELEQLP-----DDYIPISVLTNQNINLIEDRINQLFFDNAGLVEQDA---TYLSNARHIS 398
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + + +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 399 LIEKAVQSLEAVNDGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458
>gi|417643945|ref|ZP_12293967.1| tRNA modification GTPase TrmE [Staphylococcus warneri VCU121]
gi|445060704|ref|YP_007386108.1| tRNA modification GTPase TrmE [Staphylococcus warneri SG1]
gi|330685267|gb|EGG96928.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU121]
gi|443426761|gb|AGC91664.1| tRNA modification GTPase TrmE [Staphylococcus warneri SG1]
Length = 459
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 175/478 (36%), Positives = 272/478 (56%), Gaps = 26/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI +I T +G GA+GIVRLSGP AV+I +++K K + S H +
Sbjct: 3 FDTITSISTPMG--EGAIGIVRLSGPQAVEIGDKLYKGKKPLAEVDS---------HTIN 51
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V+EV+ + AP+++TRED++E+ CHG + + R+L + GA +A+
Sbjct: 52 YGHIIDPETNETVEEVMISVLRAPKTFTREDIIEINCHGGILTINRILELTMTHGARMAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGE+T RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+L
Sbjct: 112 PGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRQSILEIL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ ++ + + Q++ LET K+++ GL IVGRPN
Sbjct: 172 AQVEVNIDYPEYDDVEDATTEFLLQQSKNIKQEINQLLETGAQGKIMREGLSTVIVGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIR+T+DIVEKIGV
Sbjct: 232 VGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD+I+ ++ + T +D L + +++ +I++INK D
Sbjct: 292 ERSRKALSQADLILFVLNNNEALTEDDQTLYDVVKNE--------DVIVIINKTDLETHL 343
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ N+V D + T + +GI +LE I + + + N R L
Sbjct: 344 --DINEVKEMIGDTPLIQTSMLKQEGIDELEIQIRDLFFGGDVQNQDMTYVSNSRHISLL 401
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++++ + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 402 KQARQSIQDAIDAAESGIPMDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459
>gi|376263295|ref|YP_005150015.1| tRNA modification GTPase TrmE [Clostridium sp. BNL1100]
gi|373947289|gb|AEY68210.1| tRNA modification GTPase TrmE [Clostridium sp. BNL1100]
Length = 460
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 182/481 (37%), Positives = 274/481 (56%), Gaps = 36/481 (7%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAA+ T G G +G++R+SG A D+ ++F+ S SH V YG
Sbjct: 6 TIAALSTPYG--TGGIGVIRISGKKAFDVASKIFQ---------SSKAMEEIQSHTVTYG 54
Query: 154 VVLDRHG-NVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D +V+DEVL + M P ++TRE+V+E+ CHG V + RVL + G A+PG
Sbjct: 55 KIVDEESKDVIDEVLLLKMCKPNTFTRENVIEIHCHGGIVVINRVLELIFKNGVRPAEPG 114
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQAE + LI++K+V ++ AA++ ++G SS + S+R + LL
Sbjct: 115 EFTKRAFLNGRIDLSQAEAIIDLINSKTVESSKAAVSHLEGRLSSRLKSIREILVGLLAH 174
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IE +D+ + ++ + V++ + + ++ T K+L+ GL I I G+PNVGK
Sbjct: 175 IEVTVDYPEHDIEEITGEKVLENLINIKDELHTLAGTFERGKILREGLNIVIAGKPNVGK 234
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLN S S +AIVT+I GTTRD+IE V + G+P + DTAGIR T D+VEKIGV ++
Sbjct: 235 SSLLNQLSGSLKAIVTDIPGTTRDIIEEYVNIKGIPAKITDTAGIRSTQDVVEKIGVNKA 294
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA------ 445
AD+ I +SA G ED ++L+ I+ NKK+ +++INKID
Sbjct: 295 YEAVEHADLTIAVLSAATGIQEEDIKILDLIK-NKKA-------LILINKIDLVDNDQVI 346
Query: 446 --PSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQC 503
S E++ V N+ + +GI++LET I ++ +I N R
Sbjct: 347 EIKSQLEEYDIVLNA-------SVINARGIEELETTISELFIKGRISGNDEVLLTNSRHK 399
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
+ R E + + +S +PLD TID++ A +GQI+GE I E V+ +IF +FCIG
Sbjct: 400 YLVDRAIEDIQQALNSFNTGMPLDMVTIDIKSCADNIGQITGESIDEAVMHDIFSRFCIG 459
Query: 564 K 564
K
Sbjct: 460 K 460
>gi|354582051|ref|ZP_09000954.1| tRNA modification GTPase TrmE [Paenibacillus lactis 154]
gi|353200668|gb|EHB66128.1| tRNA modification GTPase TrmE [Paenibacillus lactis 154]
Length = 458
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 188/476 (39%), Positives = 283/476 (59%), Gaps = 27/476 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++G G + I+R+SGP AV V R+FK K+K S + SH V YG
Sbjct: 5 TIAAISTAVG--EGGIAIIRVSGPDAVTEVERIFKS----KRKLS-----QVESHTVHYG 53
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D + ++EVL M APRS+T EDVVE+ HG + ++RV+ L+ LA+PG
Sbjct: 54 HIVDPQTRENLEEVLVTVMRAPRSFTTEDVVEISAHGGVISVKRVMDLLLQLNIRLAEPG 113
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQAE V LI +KS A AL ++G S + +R +E L
Sbjct: 114 EFTKRAFLNGRIDLSQAEAVIDLIRSKSDRAFSVALKQVEGTLSRKIKELRHTLVETLAH 173
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IE +D+ + ++ L + + +K + +++ L+TA K+L+ G+ AIVGRPNVGK
Sbjct: 174 IEVNIDYPEHDVESLTADFIKEKSSQVMGEIDKLLKTAQEGKILREGITTAIVGRPNVGK 233
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLN ++ +AIVT+I GTTRDVIE VT+ +P+ LLDTAGIRET D+VE+IGVERS
Sbjct: 234 SSLLNTLAQDNKAIVTDIPGTTRDVIEEYVTINNIPLKLLDTAGIRETMDVVEQIGVERS 293
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
AD+I++ ++A + ++ EL+ +I+ + I+++NK+D PS ++
Sbjct: 294 RHAVNEADLILLVLNASEPLHQDELELMEQIRGRQ--------CIVIMNKMDL-PSQLDK 344
Query: 452 WNKVGNSF--NDHVFTCAVTGQ-GIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
V N + ++ + +V Q GI LE AI + +I G + N R L +
Sbjct: 345 --DVLNRYVPDELIVPMSVKAQEGIDRLEEAISNLFFSGRIEGGDLTYVSNVRHIALLKK 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K++L + ++ +P+D ID+R A LG+I GE + + ++ IF +FC+GK
Sbjct: 403 AKQSLQDAYEAADQLIPIDMIQIDVRLAWEQLGEILGEAVGDSLIDQIFSQFCLGK 458
>gi|304318133|ref|YP_003853278.1| tRNA modification GTPase TrmE [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|433656316|ref|YP_007300024.1| tRNA modification GTPase TrmE [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|302779635|gb|ADL70194.1| tRNA modification GTPase TrmE [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|433294505|gb|AGB20327.1| tRNA modification GTPase TrmE [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 458
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 180/475 (37%), Positives = 276/475 (58%), Gaps = 25/475 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++G + I+R+SG A+ IV +FK + K+ SH V YG
Sbjct: 5 TIAAISTAVG--EAGISIIRISGRDAIKIVSGIFKSKRNIDLKA-------VKSHTVHYG 55
Query: 154 VVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+ D N V DEVL M +P +YT+ED+VE+ CHG V +R+L L+ GA LA+PG
Sbjct: 56 FIYDSESNEVYDEVLVNVMKSPHTYTKEDIVEINCHGGYVPAKRILELVLKNGARLAEPG 115
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAF+NGR+D+SQAE V +I +K+ + A+ + G + ++ + L+
Sbjct: 116 EFTKRAFINGRIDMSQAEAVIDIIRSKTALSNKYAVMQLSGSVKDKINEIKNDLVALIAH 175
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
I A +DF D+++ N + ++D I + ++ L+++ ++++ GL I+G+PNVGK
Sbjct: 176 IFALMDFPDEDVEIFNDSELIDGIKNAIRKIDELLDSSEKGRIIREGLNTVIIGKPNVGK 235
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLNA RAIVT+I GTTRD+IE + + G+P+ L+DTAGIR+TD++VEKIGVERS
Sbjct: 236 SSLLNALLNENRAIVTDIPGTTRDIIEEYLNIKGIPIKLIDTAGIRDTDELVEKIGVERS 295
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS-- 449
+ AD+II ED E+L RI +K ++ V+NKID PS
Sbjct: 296 KEAINKADLIIFVFDNSRPLEKEDYEIL-RIIDDKN-------VLYVLNKIDL-PSMIDL 346
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+E ++ N +++ +VT +G LE + +V + + N R + L++
Sbjct: 347 DEIRRISNE--NYISLSSVTKEGFDALENTVYNMV-MENGLSNNEFLLTNMRHKDALLKA 403
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
KE L+ ++IE L DF +IDL A LG I+GE +E++++ IF +FC+GK
Sbjct: 404 KENLMSCLNTIERGLTEDFVSIDLNAAIDNLGLITGETANEDLINEIFERFCVGK 458
>gi|423082986|ref|ZP_17071568.1| tRNA modification GTPase TrmE [Clostridium difficile 002-P50-2011]
gi|423086510|ref|ZP_17074915.1| tRNA modification GTPase TrmE [Clostridium difficile 050-P50-2011]
gi|357546714|gb|EHJ28623.1| tRNA modification GTPase TrmE [Clostridium difficile 050-P50-2011]
gi|357547065|gb|EHJ28964.1| tRNA modification GTPase TrmE [Clostridium difficile 002-P50-2011]
Length = 462
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 175/474 (36%), Positives = 271/474 (57%), Gaps = 23/474 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+ G G +GI+R+SG A+ + +FK + SG + YG
Sbjct: 9 TIAAIATAPG--EGGIGILRISGERALKVAEEIFKSM-------SGKSIEEYNKRTLIYG 59
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
++D N++DEVL M P SYT EDV+E+ CHG + ++++L L LA+ GE
Sbjct: 60 NIVDNE-NIIDEVLLAYMKGPNSYTGEDVIEINCHGGFISVKKILELILSKDVRLAEAGE 118
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGR+DLSQAE V +I AK+ A + A ++G S + +R K E+L +
Sbjct: 119 FTKRAFLNGRIDLSQAEAVIDVIKAKTDIAHEVAQNQLEGSLSKKIRELRDKVTEILAHV 178
Query: 274 EARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
E +D+ ++++ + + +K + ++++ +TA K+L+ GL+ IVG+PNVGKS
Sbjct: 179 EVAIDYPEEDIEHITYQTLKEKTDELKKEIKKLYDTAESGKILREGLKTVIVGKPNVGKS 238
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLN+ RAIVT+I GTTRDVIE V + G+P+ ++DTAGIR+TDDIVEKIGVE+S+
Sbjct: 239 SLLNSILGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDIVEKIGVEKSK 298
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE- 451
AD+I+M + A + ED E+L +++ + I+++NK D E
Sbjct: 299 ESFTSADLIVMVLDASRKLSEEDIEILEKLKDKQ--------TIVLLNKNDLKQEIEEEK 350
Query: 452 -WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
V N N + A+ +GI++L+ I +V I N R + L +
Sbjct: 351 ILKYVEN--NSIIKISALQQEGIEELQDKIESMVYKGSIKNNSSLVVTNSRHKDALSKAY 408
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++ ++E+ +P DF +DL++ LG I+G+ ++E++L NIF FCIGK
Sbjct: 409 KSATDALIALEQSMPFDFVEVDLKNIWDYLGYINGDTVTEDLLDNIFHNFCIGK 462
>gi|50914157|ref|YP_060129.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS10394]
gi|73919891|sp|Q5XCB7.1|MNME_STRP6 RecName: Full=tRNA modification GTPase MnmE
gi|50903231|gb|AAT86946.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Streptococcus pyogenes MGAS10394]
Length = 458
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 274/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+ I VFK G + SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTDALAIAQSVFK----------GKNLEQVASHTIN 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G ++DEV+ MLAP+++TRE+VVE+ HG +L+ + GA +A+
Sbjct: 55 YGHIIDPKTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A A+ + G S L+ R + + L
Sbjct: 115 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +EN L TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 235 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ +D++++ ++A + T +D LLN Q + + I+++NK D
Sbjct: 295 ERSKKALQESDLVLLVLNASEKLTDQDRALLNLSQDSNR--------IILLNKTDLEQKI 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +D++ +T Q I +E I ++ GL + A + N R
Sbjct: 347 ELEQLP-----DDYIPISVLTNQNINLIEDRINQLFFDNAGLVEQDA---TYLSNARHIS 398
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + + +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 399 LIEKAVQSLEAVNDGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458
>gi|373859264|ref|ZP_09601994.1| tRNA modification GTPase TrmE [Bacillus sp. 1NLA3E]
gi|372450933|gb|EHP24414.1| tRNA modification GTPase TrmE [Bacillus sp. 1NLA3E]
Length = 461
Score = 302 bits (773), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 191/478 (39%), Positives = 284/478 (59%), Gaps = 24/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG A+ IV ++F+ V K+ S SH +
Sbjct: 3 FDTIAAISTPMG--EGAIAIVRLSGDEAISIVDKLFRGVNGKRIAS-------VQSHTIH 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + VV+EV+ M PR++T+EDVVE+ CHG V + RVL+ L GA LA+
Sbjct: 54 YGHLIDPKTEQVVEEVMVSVMKGPRTFTKEDVVEINCHGGIVSVNRVLQLVLNYGAQLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL ++G S L+ +R + +E+L
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMEGRLSKLIQKLRQEILEIL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + ++++K + ++E L+T+ K+L+ GL I+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTHVMLIEKATYVRNEIEKLLQTSQQGKILREGLSTVIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ +AIVT+I GTTRDVIE V V GVP+ LLDTAGIRET+DIVE+IGV
Sbjct: 234 VGKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLKLLDTAGIRETEDIVERIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ ++ D +T ED + ++ +I++INK D
Sbjct: 294 ERSRQVLKEADLILLVLNYSDEFTEEDRNIFRAVE--------GMDVIVIINKTDLPQQI 345
Query: 449 SNEW-NKVGNSFNDHVFTCA-VTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
E N++ + N + T + + +G+ +LE AI + I +G + N R L
Sbjct: 346 DMETVNEL--ALNHKIVTTSLLEDRGVDELEEAIASLFFSGSIESGDLTYVSNSRHIALL 403
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ A+ + I+ +P+D ID+ LG+I GE + E ++ +F +FC+GK
Sbjct: 404 NQAVHAIEEAINGIDIGIPIDIVQIDVTRTWELLGEIIGESVHESLIDQLFSQFCLGK 461
>gi|57651106|ref|YP_187524.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
COL]
gi|87160757|ref|YP_495280.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|151222824|ref|YP_001333646.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
str. Newman]
gi|161510921|ref|YP_001576580.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|258451369|ref|ZP_05699400.1| tRNA modification GTPase mnmE [Staphylococcus aureus A5948]
gi|262049467|ref|ZP_06022339.1| tRNA modification GTPase [Staphylococcus aureus D30]
gi|262051898|ref|ZP_06024113.1| tRNA modification GTPase [Staphylococcus aureus 930918-3]
gi|282920717|ref|ZP_06328436.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9765]
gi|284023035|ref|ZP_06377433.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
132]
gi|294849826|ref|ZP_06790566.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9754]
gi|415687291|ref|ZP_11451218.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CGS01]
gi|418286958|ref|ZP_12899594.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21209]
gi|418318227|ref|ZP_12929636.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21232]
gi|418322344|ref|ZP_12933677.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
VCU006]
gi|418569363|ref|ZP_13133696.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21283]
gi|418577916|ref|ZP_13142014.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418641259|ref|ZP_13203472.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-24]
gi|418648803|ref|ZP_13210840.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-88]
gi|418650109|ref|ZP_13212131.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-91]
gi|418657907|ref|ZP_13219659.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-111]
gi|418874089|ref|ZP_13428361.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418902282|ref|ZP_13456326.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418910543|ref|ZP_13464531.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG547]
gi|418924444|ref|ZP_13478349.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418927287|ref|ZP_13481177.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1612]
gi|419773360|ref|ZP_14299369.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CO-23]
gi|421148827|ref|ZP_15608486.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|422742281|ref|ZP_16796288.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
MRSA177]
gi|422745330|ref|ZP_16799273.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
MRSA131]
gi|440708238|ref|ZP_20888908.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21282]
gi|443638063|ref|ZP_21122120.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21196]
gi|73919888|sp|Q5HCI3.1|MNME_STAAC RecName: Full=tRNA modification GTPase MnmE
gi|123484183|sp|Q2FDE8.1|MNME_STAA3 RecName: Full=tRNA modification GTPase MnmE
gi|172049081|sp|A6QKK2.1|MNME_STAAE RecName: Full=tRNA modification GTPase MnmE
gi|189036213|sp|A8YYS1.1|MNME_STAAT RecName: Full=tRNA modification GTPase MnmE
gi|57285292|gb|AAW37386.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
COL]
gi|87126731|gb|ABD21245.1| tRNA modification GTPase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|150375624|dbj|BAF68884.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
str. Newman]
gi|160369730|gb|ABX30701.1| GTP-binding protein [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257860899|gb|EEV83716.1| tRNA modification GTPase mnmE [Staphylococcus aureus A5948]
gi|259160225|gb|EEW45254.1| tRNA modification GTPase [Staphylococcus aureus 930918-3]
gi|259162464|gb|EEW47034.1| tRNA modification GTPase [Staphylococcus aureus D30]
gi|282594125|gb|EFB99113.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9765]
gi|294823374|gb|EFG39803.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9754]
gi|315197916|gb|EFU28249.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CGS01]
gi|320141415|gb|EFW33258.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320144398|gb|EFW36163.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
MRSA177]
gi|365165122|gb|EHM56951.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21209]
gi|365223373|gb|EHM64662.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
VCU006]
gi|365243550|gb|EHM84224.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21232]
gi|371985758|gb|EHP02812.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21283]
gi|375019419|gb|EHS12973.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-24]
gi|375025218|gb|EHS18625.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-88]
gi|375028578|gb|EHS21921.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-91]
gi|375039851|gb|EHS32767.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-111]
gi|377699798|gb|EHT24144.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377728357|gb|EHT52459.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG547]
gi|377740997|gb|EHT64993.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377745635|gb|EHT69611.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377747648|gb|EHT71612.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377773597|gb|EHT97342.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIGC93]
gi|383972933|gb|EID88956.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CO-23]
gi|394330929|gb|EJE57017.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|436505130|gb|ELP41075.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21282]
gi|443410036|gb|ELS68515.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21196]
Length = 459
Score = 302 bits (773), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 174/479 (36%), Positives = 273/479 (56%), Gaps = 28/479 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT-SHVV 150
TI +I T +G GA+GIVRLSGP AV+I +++K G SH +
Sbjct: 3 LDTITSISTPMG--EGAIGIVRLSGPQAVEIADKLYK----------GKHLLNDVPSHTI 50
Query: 151 EYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG ++D V++EV+ + AP+++TRED++E+ CHG + + RVL + GA +A
Sbjct: 51 NYGHIIDPESKEVIEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTYGARMA 110
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+
Sbjct: 111 EPGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEI 170
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ ++++ + Q++ L+T K+++ GL IVG+P
Sbjct: 171 LAQVEVNIDYPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKP 230
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 231 NVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIG 290
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD+I+ ++ + T ED L +++ +I+++NK+D +
Sbjct: 291 VERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKNE--------DVIVIVNKMDLEQN 342
Query: 448 ASNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+ N+V + D + T + +GI +LE I + ++ + N R
Sbjct: 343 I--DINEVKDMIGDTPLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISL 400
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + ++ + + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 401 LKQARQTIQDAIDAAESGVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459
>gi|70727675|ref|YP_254591.1| tRNA modification GTPase TrmE [Staphylococcus haemolyticus
JCSC1435]
gi|82582308|sp|Q4L2Z2.1|MNME_STAHJ RecName: Full=tRNA modification GTPase MnmE
gi|68448401|dbj|BAE05985.1| possible thiophene and furan oxidation protein [Staphylococcus
haemolyticus JCSC1435]
Length = 459
Score = 302 bits (773), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 178/478 (37%), Positives = 271/478 (56%), Gaps = 26/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI +I T +G GA+GIVRLSGP AV+I +++K KK + S H +
Sbjct: 3 FDTITSISTPMG--EGAIGIVRLSGPQAVEIGDKLYKGKKKLEDVDS---------HTIN 51
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N VV+EV+ + APR++TRED++E+ CHG + + R+L + GA +A+
Sbjct: 52 YGHIVDPETNEVVEEVMISVLRAPRTFTREDIIEINCHGGILTINRILELTMTHGARMAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGE+T RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+L
Sbjct: 112 PGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRQSILEIL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ ++++ + ++ LET K+++ GL IVG+PN
Sbjct: 172 AQVEVNIDYPEYDDVEDATTEFLLEQSKKIKNEINLLLETGAQGKIMREGLSTVIVGKPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIR+T+DIVEKIGV
Sbjct: 232 VGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD+I+ ++ + T ED L I++ I+++NK D +
Sbjct: 292 ERSRKALSEADLILFVLNNNEPLTQEDRTLYEVIKNEDA--------IVIVNKTDLEQNL 343
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ N+V D + T + +GI LE I + + + N R L
Sbjct: 344 --DINEVKEMIGDTPLIQTSMLKQEGIDQLELQIRDLFFGGDVQNQDMTYVSNSRHISLL 401
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + A+ + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 402 KQARNAIQDAIDAAESGIPMDMVQIDLTRTWELLGEIIGESASDELIDQLFSQFCLGK 459
>gi|410666407|ref|YP_006918778.1| tRNA modification GTPase MnmE [Thermacetogenium phaeum DSM 12270]
gi|409104154|gb|AFV10279.1| tRNA modification GTPase MnmE [Thermacetogenium phaeum DSM 12270]
Length = 489
Score = 302 bits (773), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 180/475 (37%), Positives = 283/475 (59%), Gaps = 25/475 (5%)
Query: 95 IAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGV 154
IAA+ T++G A+GIVR+SG AV++V R F+P +K G + SH + G
Sbjct: 35 IAALGTALG--EAAIGIVRMSGRGAVELVDRFFQPFRK------GQNLLKTPSHSMRLGY 86
Query: 155 VLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEF 214
+ + G V+DEVL M P +YTREDVVE+ CHG + ++RVL L+ GA LA+PGEF
Sbjct: 87 IRNEDGEVIDEVLVSVMRGPHTYTREDVVEINCHGGILPIKRVLDLLLKNGARLAEPGEF 146
Query: 215 TLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIE 274
T RAFLNGR+DL+QAE V +I A+S A+ AL + GG S + +R + +L +E
Sbjct: 147 TKRAFLNGRIDLAQAEAVLDVIRARSEKGAEIALRQLSGGLSREIGGMRDELKSILAWVE 206
Query: 275 ARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSL 334
A +DF +++ + ++ +M++I A+ V+ +E + ++ + GL+ +VG+PNVGKS+L
Sbjct: 207 AEIDFPEDVDQIPVDKLMERIDALIARVDGYIEGSRAGRIYREGLKTVLVGKPNVGKSTL 266
Query: 335 LNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAV 394
LN ERA+VT+I GTTRD+IE ++ + G+P+ L+DTAGIR +VE++G++R+ A
Sbjct: 267 LNTLLGEERALVTDIPGTTRDIIEEAINLEGIPLILMDTAGIRGKAGVVERLGIDRTRAA 326
Query: 395 ALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE--- 451
AD+++ + ED ++L I+ + ++++NKID +
Sbjct: 327 VEEADIVLALFDVTSELSEEDRDVLELIKDKRG--------VVLLNKIDLKERRLDVDLI 378
Query: 452 WNKVGNSFNDHVF--TCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
++G+S+ VF A G G ++L A++ +VG+ ++ A +RQ E + R
Sbjct: 379 RERLGSSY---VFLEISARLGWGRKELGEAVLNVVGVSKL-APESAVLTRRRQLEVMERV 434
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+E+LV K I +P + IDL DA LGQI G+ SE+V+ IF +FCIGK
Sbjct: 435 RESLVGAKCGIRGGMPPECVAIDLWDAWTQLGQILGDTESEDVIDEIFREFCIGK 489
>gi|409387769|ref|ZP_11239929.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Lactococcus
raffinolactis 4877]
gi|399205176|emb|CCK20844.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Lactococcus
raffinolactis 4877]
Length = 455
Score = 302 bits (773), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 181/476 (38%), Positives = 277/476 (58%), Gaps = 29/476 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG A+ I +VF +G SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGSDAIAIADKVF----------TGKSLANCDSHTLN 53
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG + + + V+DEV+ M AP+++TREDVVE+ HG + +L+ L GA +A+P
Sbjct: 54 YGHITE-NTRVLDEVMVGVMKAPKTFTREDVVEINTHGGIAVMNEILQLLLRNGARMAEP 112
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DLSQAE V +I AK+ A + A+ + G S+L+ R + +E L
Sbjct: 113 GEFTKRAFLNGRMDLSQAEAVMDIIRAKTDQAMNIAVKQLDGSLSNLINKTRQEILETLA 172
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + ++ +K A +EN L+TA K+L+ GL AI+GRPNV
Sbjct: 173 QVEVNIDYPEYDDVEEMTTRMLREKTAAFQTLLENLLKTAKRGKILREGLSTAIIGRPNV 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGVE
Sbjct: 233 GKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNINGVPLKLVDTAGIRETDDIVERIGVE 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS AD++++ ++A + T +D +LL K +E S ++L +NK D + +
Sbjct: 293 RSHKALEEADLVLLVLNANEALTGQDRQLL-------KISEDSNRIVL-LNKTDLSENI- 343
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLMR 508
+ + D + + I +E I ++ + I + N R + +
Sbjct: 344 ----ETADLPEDVIKISVLEDTNIDKIEAKINELFFENAGIIEQDATYLSNSRHIALIEQ 399
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
EAL + ++ +P+D +D+ A LG+++G+ +E+++ +F +FC+GK
Sbjct: 400 ALEALKAVNDGLDAGMPVDLVQVDMTRAWEILGELTGDAAPDELITQLFSQFCLGK 455
>gi|385814789|ref|YP_005851182.1| tRNA modification GTPase mnmE [Lactobacillus helveticus H10]
gi|323467508|gb|ADX71195.1| tRNA modification GTPase mnmE [Lactobacillus helveticus H10]
Length = 467
Score = 302 bits (773), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 176/476 (36%), Positives = 275/476 (57%), Gaps = 25/476 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T IG G + IVR+SG AV I VFK G+ + +H +
Sbjct: 14 FDTIAAISTPIG--EGGISIVRMSGEDAVKIANEVFK----------GADLTKVPTHTIH 61
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + +DE + + AP+++TRED+VE+ CHG V +L+ L GA +A
Sbjct: 62 YGHIVDPDTDKTIDESMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQLLLSHGARMAD 121
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V ++ AK+ A A+ + GG + ++R + ++ L
Sbjct: 122 PGEFTKRAFVNGRIDLTQAESVMDIVRAKTDKARQVAVGQLAGGLLHKIQAMRQEILDTL 181
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+E +D+ + + + + D ++ + ++ L+TA K+L++GL AIVGRPNV
Sbjct: 182 ANVEVNIDYPEYDADAVTAKQMADTAKSVIKKIDRLLKTAQEGKILRNGLATAIVGRPNV 241
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ++S++AIVT++AGTTRD +E V+V GVP+ L+DTAGI TDD VEKIGVE
Sbjct: 242 GKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTDDKVEKIGVE 301
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ + A T+ED L+ + K+ I+V+NK D +
Sbjct: 302 RSKKALDRADLVLLLIDASQELTAEDKALIEETKDKKR--------IIVLNKSDLGQKIT 353
Query: 450 -NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+E K S D + T + + + LE I K+ + + NQRQ L +
Sbjct: 354 VDEMKKQTGS--DVILTSILKEKNLDKLEELINKLFFAGIENSNDQVMVTNQRQTSLLTK 411
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+ L + ++E+ +P+D ID A LG+I+GE +E+++ +F +FC+GK
Sbjct: 412 AKKELQDVVQAVEDGIPIDIAQIDFTGAWDTLGEITGESAPDELVTQLFRQFCLGK 467
>gi|291547599|emb|CBL20707.1| tRNA modification GTPase trmE [Ruminococcus sp. SR1/5]
Length = 458
Score = 302 bits (773), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 176/475 (37%), Positives = 280/475 (58%), Gaps = 23/475 (4%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT-SHVVE 151
+TIAAI T++ +GIVR+SGP A +I V++ G S + SH +
Sbjct: 4 TTIAAISTAMSAS--GIGIVRISGPEAFEIASGVYRS-------KGGKKSLKNVPSHTIH 54
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG + D +VDEVL + M PR+YT ED +E+ CHG + +++VL L+ GA +A+P
Sbjct: 55 YGYIYDNE-EMVDEVLVMAMRGPRTYTGEDTIEIDCHGGVLAMKKVLETVLKNGAIIAEP 113
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DLSQAE V +I +K+ + ++ ++G V +R K + +
Sbjct: 114 GEFTKRAFLNGRIDLSQAEAVMDVIQSKNEYSLKNSVGQLKGSVRKNVQQIREKLLYHIA 173
Query: 272 EIEARLDFDDEMPPLNLNLVMDKIHAMSQD-VENALETANYDKLLQSGLQIAIVGRPNVG 330
IE+ LD + + +++I A ++ ++N L+TA K++Q G++ I+G+PN G
Sbjct: 174 YIESALDDPEHYDLTGYSEELEQIVAEEKEKIQNLLKTAGDGKIIQEGIRTVILGKPNAG 233
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLN +RAIVT+IAGTTRDV+E + + G+ + + DTAGIR+T+DIVEKIGV +
Sbjct: 234 KSSLLNLLLGEDRAIVTDIAGTTRDVLEEYINLHGITLKIADTAGIRQTEDIVEKIGVSK 293
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
++ +A AD+I+ V + D E++ +Q K I++ +K D +
Sbjct: 294 AKEMAADADLILYVVDSSVPLDENDEEIIKILQEKK--------TIVLYSKTDLESAIDI 345
Query: 451 EWNKVGNSFNDHVFTCAVTGQ-GIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
E K + N V + + GI DLE I ++ +I + N+R ++L++
Sbjct: 346 EDLK--SRINQPVIPISAKEETGITDLEEKIREMFFSGEIDFNDEVYITNERHRQELLKA 403
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+E+L +++SIE +P DF++IDL DA +LG+I GE + E++++ IF KFC+GK
Sbjct: 404 QESLSLVENSIESGMPEDFYSIDLTDAYESLGRILGESLGEDLVNEIFSKFCMGK 458
>gi|424835728|ref|ZP_18260387.1| tRNA modification GTPase TrmE [Clostridium sporogenes PA 3679]
gi|365977598|gb|EHN13696.1| tRNA modification GTPase TrmE [Clostridium sporogenes PA 3679]
Length = 461
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 169/476 (35%), Positives = 279/476 (58%), Gaps = 21/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F IAA+ T +G G + I+R+SG ++DIV +FK K +P S +
Sbjct: 4 FDNIAAVATPLG--EGGISIIRISGDKSLDIVSSIFKG-----KNDRSLDDIKPYS--MR 54
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++++ ++DEVL M PRS+T ED +E+ CHG + +++L+ +++GA LA+
Sbjct: 55 YGFIIEKESKEIIDEVLVSYMKGPRSFTAEDTLEINCHGGVIPTKKILKELIKSGARLAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I +K+ + +AL +G S + S+R K I+++
Sbjct: 115 PGEFTKRAFLNGRIDLSQAEAVIDIIRSKTDLSMKSALKQAEGTLSKEINSIRNKMIKII 174
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IEA +D+ +D++ + + + + ++N + + K+L+ GL IVG+PNV
Sbjct: 175 AHIEATVDYPEDDLEEITGQKIKVDLKEIINKIDNLISASEEGKILREGLNTVIVGKPNV 234
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA +AIVTEI GTTRDVIE + + G+P+ ++DTAGIRET+D+VEKIGVE
Sbjct: 235 GKSSLLNALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAGIRETEDVVEKIGVE 294
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S+ AD++I + ED E++ I++ K I+++NK+D +
Sbjct: 295 KSKEKIDEADLVIFMLDLSRKIDEEDIEIMEFIKNKK--------YIVLLNKLDLNKDLN 346
Query: 450 NEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + + + ++ +V G+ +L+ I + +I + N R E L+R
Sbjct: 347 KENHFIKGLDSKYIIKTSVKNNSGLNELKECIKDLFFSGEIKS-DELIVTNARHQEALIR 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
KEA ++ ++ +E+ +D +ID+R+ LG+I+G+ + E ++ IF +FC+GK
Sbjct: 406 AKEACLQAIETLSDEISIDLASIDIRNGWKYLGEITGDTLDENIIDKIFSEFCLGK 461
>gi|332800542|ref|YP_004462041.1| tRNA modification GTPase mnmE [Tepidanaerobacter acetatoxydans Re1]
gi|438003951|ref|YP_007273694.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Tepidanaerobacter
acetatoxydans Re1]
gi|332698277|gb|AEE92734.1| tRNA modification GTPase mnmE [Tepidanaerobacter acetatoxydans Re1]
gi|432180745|emb|CCP27718.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Tepidanaerobacter
acetatoxydans Re1]
Length = 462
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 184/479 (38%), Positives = 280/479 (58%), Gaps = 20/479 (4%)
Query: 88 KAGTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTS 147
K + TIAAI T+IG G +GIVR+SGP A +I ++FKP KK + +
Sbjct: 2 KTDSCETIAAISTAIG--EGGIGIVRISGPRAFEIAEKIFKPRIKK-------SLFEFKN 52
Query: 148 HVVEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
+ G ++D + ++DEVL AP +YTRED+VE+ CHG V +R+L L+ GA
Sbjct: 53 RTLYLGDIVDSNDEIIDEVLLAIFKAPHTYTREDMVEINCHGGLVAQKRILALVLDNGAR 112
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
LA+PGEFT RAFLNGR+DLSQAE V +I AK+ A A + G FS ++ +R+ +
Sbjct: 113 LAEPGEFTKRAFLNGRIDLSQAEAVIDIIRAKTDRALAVANRRLTGEFSEKISKIRSNLL 172
Query: 268 ELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
++ IEA +DF +D++P + +I+ + + VE+ L +A ++L+ GL I+G
Sbjct: 173 NVIAHIEANIDFPEDDIPEAEPEYISQEINNVLKMVEDLLRSAGSGRILREGLSTLILGN 232
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
NVGKSSLLNA + ERAIVT+I GTTRD+IE + + G+P+ ++DTAGIR+T D VEKI
Sbjct: 233 TNVGKSSLLNALLQEERAIVTDIPGTTRDIIEEYIDIQGIPIKIIDTAGIRQTTDEVEKI 292
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
G+ R+ A+++++ + T +D L+ + K+T I VINK+D P
Sbjct: 293 GINRAMKHLQEAELVLLMIDVSRKLTDDDKRLIELV--GDKTT------ITVINKVDL-P 343
Query: 447 SASNEWN-KVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
A +E+ K V A+ +GI +L+T I + ++RQ
Sbjct: 344 VAVDEYEIKKLVPEAKIVKVSALKQEGIDELKTVIYDTITEKMGFTDEGLIVASERQRRI 403
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L ++E L ++ E +P++ ID+RDA LG+I+G+ +SE++++ IF KFCIGK
Sbjct: 404 LEESREFLKSALCAMAEGVPIEMVEIDIRDAWEKLGEITGDTVSEDIINTIFQKFCIGK 462
>gi|339442030|ref|YP_004708035.1| hypothetical protein CXIVA_09660 [Clostridium sp. SY8519]
gi|338901431|dbj|BAK46933.1| hypothetical protein CXIVA_09660 [Clostridium sp. SY8519]
Length = 460
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 172/464 (37%), Positives = 269/464 (57%), Gaps = 27/464 (5%)
Query: 108 AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVL 167
+GI+R+SG ++++ R+F+P+K KKK S + SH V YG + D +VDEVL
Sbjct: 17 GIGIIRISGEESLEVADRIFRPIKSKKKVS------QMDSHTVHYGYICDGE-EIVDEVL 69
Query: 168 AVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLS 227
+ M P +YTRED VE+ HG + ++R+L L+ GA A+PGE+T RAFLNGR+DL+
Sbjct: 70 LLVMRGPHTYTREDTVEIDTHGGVIVMKRILEVVLKNGARPAEPGEYTKRAFLNGRIDLT 129
Query: 228 QAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLD------FDD 281
QAE+V +I+AKS A +++ +QG +T +R + + L IE+ LD D
Sbjct: 130 QAESVIDIINAKSDNALKSSVRQLQGSIRDKITDIRGRLLYELAFIESALDDPEHYTLDG 189
Query: 282 EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKS 341
+P L M KIH+ ++++ L+ A+ ++L+ G+ IVG+PN GKSSLLNA +
Sbjct: 190 YLPELKQK--MQKIHS---ELKHLLDRADDGRILKEGINTVIVGKPNAGKSSLLNALTGE 244
Query: 342 ERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVI 401
ERAIVT+IAGTTRD ++ S+ + G+ + ++DTAGIR+T+D VE+IGVERS AD+I
Sbjct: 245 ERAIVTDIAGTTRDTLQESIQLDGIGLNIVDTAGIRDTEDTVERIGVERSRQAMEDADLI 304
Query: 402 IMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFND 461
+ + DSE+L RI + +I+++NK D S E + +
Sbjct: 305 LYVADSSTPLDENDSEILQRIAGRR--------VIVLLNKSDLKEETSAEELRAHLDPDQ 356
Query: 462 HVFTCA-VTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSI 520
V + V G G+Q + + + + N RQ L E++ ++ S+
Sbjct: 357 EVIPVSMVDGTGLQQFRDRVKDMFFHGNLSFNDEVYLTNARQKNTLTLAWESIGQVLQSM 416
Query: 521 EEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
E ++P DF TID+ DA LG++ GE + ++++ IF +FC+GK
Sbjct: 417 ENQMPEDFLTIDMMDAYQELGKMIGEAVEDDLVDEIFSEFCMGK 460
>gi|326804314|ref|YP_004322132.1| tRNA modification GTPase TrmE [Aerococcus urinae ACS-120-V-Col10a]
gi|326650573|gb|AEA00756.1| tRNA modification GTPase TrmE [Aerococcus urinae ACS-120-V-Col10a]
Length = 466
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 170/477 (35%), Positives = 274/477 (57%), Gaps = 20/477 (4%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIA + +I PG A+GIVRLSG A+ I V++ K+ SH
Sbjct: 6 FDTIADTIAAISTAPGEGAIGIVRLSGDQALAIADTVYQMGTKQLANQD--------SHT 57
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D + +DEV+ + AP++YTRED+VE+ CHG V R+L+ L GA +
Sbjct: 58 IHYGHIVDPQSEQELDEVMVTVLRAPKTYTREDIVEINCHGGMVATDRILQLVLREGARM 117
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DL+QAE V+ +I +K+ + D A+ + G S+ ++++R + +
Sbjct: 118 AEPGEFTKRAFLNGRIDLTQAEAVQDMIRSKTDRSMDQAMKQLDGKLSTKISTLRNRISD 177
Query: 269 LLTEIEARLDFDDEMPPLNLNLVMDKI-HAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
+ ++E +D+ + ++D+ + +++ L TA K+L+ G++ AI+GRP
Sbjct: 178 AMVQVEVNIDYPEYEEEEMTLELLDQTADTIQAELQRLLTTAKQGKILRDGIETAIIGRP 237
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN + ++AIVT+I GTTRD IE V + GVP+ L+DTAGIR+T+D+VEKIG
Sbjct: 238 NVGKSSLLNHLLREDKAIVTDIEGTTRDTIEEYVNLRGVPLKLVDTAGIRDTEDVVEKIG 297
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD++++ ++ + + D ELL + + + I+++NK D P+
Sbjct: 298 VERSRKAMEEADLVLLILNQSEPLQAMDRELLTMTKDSNR--------IILLNKTDLDPA 349
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
S + + + T QG+ DLE I ++ Q + N R + L
Sbjct: 350 LSLDDLADYADKEEIIKTSITQDQGVDDLEERISQLFFSGQTGDRDATYVSNTRHIDLLQ 409
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ +A+ K +I P+D ID A LG+I+GE+ +E+++ +F +FC+GK
Sbjct: 410 KASQAIAEAKEAISLGTPVDLIQIDFNRAFEFLGEITGENAPDELITKLFSQFCLGK 466
>gi|315644290|ref|ZP_07897460.1| tRNA modification GTPase TrmE [Paenibacillus vortex V453]
gi|315280665|gb|EFU43954.1| tRNA modification GTPase TrmE [Paenibacillus vortex V453]
Length = 458
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 184/475 (38%), Positives = 275/475 (57%), Gaps = 25/475 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++G G + I+R+SGP AV V R+FK K + S H V YG
Sbjct: 5 TIAAISTAVG--EGGIAIIRVSGPDAVQEVERIFKSKNKLTQVDS---------HTVHYG 53
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+ D + G ++EVL M APRS+T EDVVE+ HG + ++RV+ L LA+PG
Sbjct: 54 HIADPKTGENLEEVLVTVMRAPRSFTTEDVVEISAHGGVISVKRVMDLLLLLNIRLAEPG 113
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQAE V LI +KS A AL ++G S + +R +E L
Sbjct: 114 EFTKRAFLNGRIDLSQAEAVMDLIRSKSDRAFSVALKQVEGTLSRKINELRHTLVETLAH 173
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IE +D+ + ++ L + +K + +++ L+TA K+L+ G+ AI+GRPNVGK
Sbjct: 174 IEVNIDYPEHDVESLTSEFIKEKSQHVMHEIDKLLKTAQEGKILREGITTAIIGRPNVGK 233
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLN ++ RAIVT+I GTTRDVIE VT+ +P+ LLDTAGIRET D+VE+IGVERS
Sbjct: 234 SSLLNTLAQDNRAIVTDIPGTTRDVIEEFVTINNIPLKLLDTAGIRETMDVVEQIGVERS 293
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
+ AD+I++ ++A + ++ EL+ +I+ + I+++NK+D PS +
Sbjct: 294 KHAVNEADLILLVLNASEPLHQDELELMEQIRGRQ--------CIVIMNKMDL-PSQLD- 343
Query: 452 WNKVGNSFNDHVFT--CAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+ + + + + +GI LE AI + QI G + N R L ++
Sbjct: 344 LDILHRYYPEELIVPMSVKAEEGIDRLEEAISNLFFSGQIEGGDLTYVSNVRHIALLKKS 403
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K++L + E+ +P+D ID+R A L +I GE + + ++ IF +FC+GK
Sbjct: 404 KQSLQDAYDAAEQLIPIDMIQIDVRMAWEQLSEILGEAVGDSLIDQIFSQFCLGK 458
>gi|223043424|ref|ZP_03613470.1| tRNA modification GTPase TrmE [Staphylococcus capitis SK14]
gi|314934963|ref|ZP_07842322.1| tRNA modification GTPase TrmE [Staphylococcus caprae C87]
gi|417906763|ref|ZP_12550543.1| tRNA modification GTPase TrmE [Staphylococcus capitis VCU116]
gi|222443213|gb|EEE49312.1| tRNA modification GTPase TrmE [Staphylococcus capitis SK14]
gi|313652893|gb|EFS16656.1| tRNA modification GTPase TrmE [Staphylococcus caprae C87]
gi|341597574|gb|EGS40128.1| tRNA modification GTPase TrmE [Staphylococcus capitis VCU116]
Length = 459
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 175/478 (36%), Positives = 274/478 (57%), Gaps = 26/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI +I T +G GA+GIVRLSGP A++I ++K KKK S +H +
Sbjct: 3 FDTITSISTPMG--EGAIGIVRLSGPQAIEIGDTLYKG----KKKLS-----EVDTHTIN 51
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V+EV+ + AP+++TRED++E+ CHG + + R+L + GA +A+
Sbjct: 52 YGHIIDPETNETVEEVMISVLRAPKTFTREDIIEINCHGGILTINRILELTMTYGARMAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGE+T RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+L
Sbjct: 112 PGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEIL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ ++++ + +++ LET K+++ GL IVGRPN
Sbjct: 172 AQVEVNIDYPEYDDVEDATTEFLLEQSKNIKEEINRLLETGTQGKIMREGLSTVIVGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIR+T+DIVEKIGV
Sbjct: 232 VGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD+I+ ++ + T +D L +++ +I++INK D P
Sbjct: 292 ERSRKALSEADLILFVLNNNEPLTEDDQTLYEVVKNED--------VIVIINKTDLEPRL 343
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ ++V D + T + +GI +LE I + ++ + N R L
Sbjct: 344 --DIDEVKEMIGDMPLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLL 401
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++ + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 402 KQARHSIQDAIDAAESGVPMDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459
>gi|315659998|ref|ZP_07912856.1| tRNA modification GTPase TrmE [Staphylococcus lugdunensis M23590]
gi|315494899|gb|EFU83236.1| tRNA modification GTPase TrmE [Staphylococcus lugdunensis M23590]
Length = 471
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 176/481 (36%), Positives = 275/481 (57%), Gaps = 32/481 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT---SH 148
F TI +I T +G GA+GIVRLSGP A++I +++K G ++ SH
Sbjct: 15 FDTITSISTPMG--EGAIGIVRLSGPQAIEIGDKLYK------------GKYKLAEVDSH 60
Query: 149 VVEYGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
+ YG ++D N VV+EV+ + AP+++TRED++E+ CHG + + RVL + GA
Sbjct: 61 TINYGHIVDPETNEVVEEVMISVLRAPKTFTREDIIEINCHGGILTINRVLELTMTHGAR 120
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
+A+PGE++ RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +
Sbjct: 121 MAEPGEYSKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRKSIL 180
Query: 268 ELLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVG 325
E+L ++E +D+ D++ ++++ + +++ LET K+++ GL IVG
Sbjct: 181 EILAQVEVNIDYPEYDDVEDATTEFLLEQSKNIKAEIDKLLETGAQGKIMREGLSTVIVG 240
Query: 326 RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEK 385
+PNVGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIR+T+DIVEK
Sbjct: 241 KPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEK 300
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445
IGVERS AD+I+ ++ + T ED L I++ +I+++NK D A
Sbjct: 301 IGVERSRKALSQADLILFVLNYNEPLTKEDRTLFEVIKNE--------DVIVIVNKTDLA 352
Query: 446 PSASNE--WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQC 503
+ E +GN + T + +GI +LE I + + + N R
Sbjct: 353 QQLNIEEVQEMIGNK--PLIQTSMLKQEGIDELEIQIRDLFFGGDVQNQDMTYVSNSRHI 410
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
L + + A+ + E +P+D IDL LG+I GE S+E+++ +F +FC+G
Sbjct: 411 ALLKQARHAIQDAIDAAESGVPMDMVQIDLTRTWEILGEIIGESASDELINQLFSQFCLG 470
Query: 564 K 564
K
Sbjct: 471 K 471
>gi|418644032|ref|ZP_13206184.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-55]
gi|375027012|gb|EHS20389.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-55]
Length = 459
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 173/479 (36%), Positives = 273/479 (56%), Gaps = 28/479 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT-SHVV 150
TI +I T +G GA+GIVRLSGP A++I +++K G SH +
Sbjct: 3 LDTITSISTPMG--EGAIGIVRLSGPQAIEIADKLYK----------GKHLLNDVPSHTI 50
Query: 151 EYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG ++D V++EV+ + AP+++TRED++E+ CHG + + RVL + GA +A
Sbjct: 51 NYGHIIDPESKEVIEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTYGARMA 110
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+
Sbjct: 111 EPGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEI 170
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ ++++ + Q++ L+T K+++ GL IVG+P
Sbjct: 171 LAQVEVNIDYPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKP 230
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 231 NVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIG 290
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD+I+ ++ + T ED L +++ +I+++NK+D +
Sbjct: 291 VERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKNE--------DVIVIVNKMDLEQN 342
Query: 448 ASNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+ N+V + D + T + +GI +LE I + ++ + N R
Sbjct: 343 I--DINEVKDMIGDTPLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISL 400
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + ++ + + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 401 LKQARQTIQDAIDAAESGVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459
>gi|357637846|ref|ZP_09135719.1| tRNA modification GTPase TrmE [Streptococcus urinalis 2285-97]
gi|418416637|ref|ZP_12989836.1| tRNA modification GTPase mnmE [Streptococcus urinalis FB127-CNA-2]
gi|357586300|gb|EHJ55708.1| tRNA modification GTPase TrmE [Streptococcus urinalis 2285-97]
gi|410874455|gb|EKS22386.1| tRNA modification GTPase mnmE [Streptococcus urinalis FB127-CNA-2]
Length = 458
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 174/477 (36%), Positives = 273/477 (57%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+DI RVFK G SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTNALDIAQRVFK----------GKNLKTVDSHTIN 54
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG V+D N ++DEV+ MLAP+++TREDV+E+ HG +L+ ++ GA +A+
Sbjct: 55 YGHVIDPKTNEILDEVMVTVMLAPKTFTREDVIEINTHGGIAVTNEILQLLIKNGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE + +I AK+ A + A+ + G L+ R + + L
Sbjct: 115 PGEFTKRAFLNGRVDLTQAEAIMDIIRAKTDKAMNVAVKQLDGSLYQLINDTRQEILNTL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +EN L+TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTTQLLKEKTLEFQNLLENLLKTAKRGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+I GTTRDVIE V + GVP+ L+DTAGIR+TDD+VEKIGV
Sbjct: 235 VGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDLVEKIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ + AD++++ ++A + T +D ELL + + + I+++NK D
Sbjct: 295 ERSKKALMDADLVLLVLNASEKLTKQDKELLELSKDSNR--------IILLNKTDLPQVI 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLH-QIPAGGRRWAVNQRQCEQLM 507
E +D + + + I +E I ++ + ++ + N R +
Sbjct: 347 EKELLP-----DDLIPISVLKNENINLIEENINQLFFDNAEMIEKDATYLSNARHISLIE 401
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++L + + +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 402 QALDSLSAVNEGLAMGMPVDLLQVDLTRTWEILGEITGDAAPDELITKLFSQFCLGK 458
>gi|409998725|ref|YP_006753126.1| tRNA modification GTPase MnmE [Lactobacillus casei W56]
gi|406359737|emb|CCK24007.1| tRNA modification GTPase MnmE [Lactobacillus casei W56]
Length = 537
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 183/478 (38%), Positives = 276/478 (57%), Gaps = 28/478 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
+ TIAAI T PPG A+ IVRLSG AV +VFK G + SH
Sbjct: 83 YDTIAAIST----PPGEGAISIVRLSGETAVATANQVFK----------GKDLSQVKSHT 128
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D G ++DEV+ MLAP+++TREDVVE+ CHG V R+L+ L GA +
Sbjct: 129 IHYGHIVDPESGELIDEVMVSVMLAPKTFTREDVVEINCHGGIVATNRILQLLLGEGARM 188
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DL++AE+V LI AK+ A A+ + G +L+ +R + +E
Sbjct: 189 AEPGEFTKRAFLNGRIDLTEAESVMDLIRAKTDRAMQVAVNQLDGNLHTLIKRLRQEILE 248
Query: 269 LLTEIEARLDFDD-EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
+L ++E +D+ + + + ++++K + + + N L TA+ K+L+ GL AIVGRP
Sbjct: 249 VLAQVEVNIDYPEYDTDEMTTKMLLEKAQTVQKAISNLLSTASQGKVLREGLATAIVGRP 308
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN ++AIVT++AGTTRDV+E V V GVP+ L+DTAGI +T D VEKIG
Sbjct: 309 NVGKSSLLNHMLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTDKVEKIG 368
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD+I++ + + T ED +L+ + K+ I+V+NK D P+
Sbjct: 369 VERSRQAITQADLILLVLDQSEPLTDEDEQLIQATANKKR--------IIVLNKQDL-PA 419
Query: 448 ASNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ + D + A+ T G+ L+ I K+ + N RQ L
Sbjct: 420 QLDTTALLKLVSPDEIIKTAIPTSAGMDALDERIAKLFFGGIENSQTTVMVSNARQIGLL 479
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++L + + I +P+D ID+ A LG+I+GE +E+++ +F +FC+GK
Sbjct: 480 RQANKSLDAVIAGIHAGMPIDLVQIDMTAAWDKLGEITGESAPDELITQLFSQFCLGK 537
>gi|153854261|ref|ZP_01995560.1| hypothetical protein DORLON_01554 [Dorea longicatena DSM 13814]
gi|149753036|gb|EDM62967.1| tRNA modification GTPase TrmE [Dorea longicatena DSM 13814]
Length = 460
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 182/478 (38%), Positives = 280/478 (58%), Gaps = 30/478 (6%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
STIAAI T++ +GIVR+SGP A I RV+K K+KK SH + Y
Sbjct: 7 STIAAISTAMSNS--GIGIVRMSGPEAFQIADRVYKGKKEKK-------LCDQKSHTIHY 57
Query: 153 GVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
G ++D V+DEVL + M P SYT ED VE+ CHG ++R+L ++ GA A+PG
Sbjct: 58 GYIVDGE-QVIDEVLVMLMRGPHSYTGEDTVEINCHGGVYVVKRILEVLIKNGARPAEPG 116
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
E+T RAFLNGRLDLSQAE V LI++++ A ++++ ++G ++ +R K +
Sbjct: 117 EYTKRAFLNGRLDLSQAEAVGDLIASQNEYALQSSVSQLKGNIKDKISEMREKILYHTAF 176
Query: 273 IEARLDFDDEMPPLN-----LNLVMDKI-HAMSQDVENALETANYDKLLQSGLQIAIVGR 326
IE LD D E ++ L V+D+I AM + L++ + ++++ G++ I+G+
Sbjct: 177 IETALD-DPEHISVDGYGETLKKVVDEIMEAMKR----LLDSCDDGRIIKEGVRTVILGK 231
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PN GKSSLLN +RAIVT+IAGTTRDV+E + + G+ + ++DTAGIR+T+D+VEKI
Sbjct: 232 PNAGKSSLLNVLLGEDRAIVTDIAGTTRDVLEEHLNLKGISLNIMDTAGIRDTEDVVEKI 291
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GV+R++ A AD+I+ + A D+E+L+ I+ + I+++NK D
Sbjct: 292 GVDRAKEYADKADLILYVIDASRPLDENDAEILHLIKGKRA--------IILLNKSDLDM 343
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ E ++ F + A QGI++LE + ++ ++ + N RQ L
Sbjct: 344 QVTKEQEELPEEFP-VIEISAKNVQGIEELEDTLKEMFFQGELTFNDEIYITNVRQKTAL 402
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL R+ SI ++P DF++IDL DA ALG I+GE I E++++ IF KFC+GK
Sbjct: 403 QDAYAALERVNDSIAADMPEDFYSIDLMDAYEALGNITGETIGEDLVNEIFSKFCMGK 460
>gi|418635554|ref|ZP_13197929.1| tRNA modification GTPase TrmE [Staphylococcus lugdunensis VCU139]
gi|374841821|gb|EHS05277.1| tRNA modification GTPase TrmE [Staphylococcus lugdunensis VCU139]
Length = 459
Score = 301 bits (771), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 176/481 (36%), Positives = 276/481 (57%), Gaps = 32/481 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT---SH 148
F TI +I T +G GA+GIVRLSGP A++I +++K G ++ SH
Sbjct: 3 FDTITSISTPMG--EGAIGIVRLSGPQAIEIGDKLYK------------GKYKLAEVDSH 48
Query: 149 VVEYGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
+ YG ++D N VV+EV+ + AP+++TRED++E+ CHG + + RVL + GA
Sbjct: 49 TINYGHIVDPETNEVVEEVMISVLRAPKTFTREDIIEINCHGGILTINRVLELTMTHGAR 108
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
+A+PGE++ RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +
Sbjct: 109 MAEPGEYSKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRQSIL 168
Query: 268 ELLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVG 325
E+L ++E +D+ D++ ++++ + +++ LET K+++ GL IVG
Sbjct: 169 EILAQVEVNIDYPEYDDVEDATTEFLLEQSKNIKAEIDKLLETGAQGKIMREGLSTVIVG 228
Query: 326 RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEK 385
+PNVGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIR+T+DIVEK
Sbjct: 229 KPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEK 288
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445
IGVERS AD+I+ ++ + T ED L I++ +I+++NK D A
Sbjct: 289 IGVERSRKALSQADLILFVLNYNEPLTKEDRTLFEVIENE--------DVIVIVNKTDLA 340
Query: 446 PSASNE--WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQC 503
+ E +GN + T + +GI +LE I + + + N R
Sbjct: 341 QQLNIEEVQEMIGNK--PLIQTSMLKQEGIDELEIQIRDLFFGGDVQNQDMTYVSNSRHI 398
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
L + + A+ ++ E +P+D IDL LG+I GE S+E+++ +F +FC+G
Sbjct: 399 ALLKQARHAIQDAINAAESGVPMDMVQIDLTRTWEILGEIIGESASDELINQLFSQFCLG 458
Query: 564 K 564
K
Sbjct: 459 K 459
>gi|306827423|ref|ZP_07460709.1| tRNA modification GTPase TrmE [Streptococcus pyogenes ATCC 10782]
gi|421893439|ref|ZP_16323946.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Streptococcus
pyogenes NS88.2]
gi|304430368|gb|EFM33391.1| tRNA modification GTPase TrmE [Streptococcus pyogenes ATCC 10782]
gi|379980808|emb|CCG27668.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Streptococcus
pyogenes NS88.2]
Length = 458
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 274/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+ I VFK G + SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTDALAIAQSVFK----------GKNLEQVASHTIN 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG +++ + G ++DEV+ MLAP+++TRE+VVE+ HG +L+ + GA +A+
Sbjct: 55 YGHIINPKTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A A+ + G S L+ R + + L
Sbjct: 115 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +EN L TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 235 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D LLN Q + + I+++NK D
Sbjct: 295 ERSKKALQEADLVLLVLNASEKLTDQDRALLNLSQDSNR--------IILLNKTDLEQKI 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +D++ +T Q I +E I ++ GL + A + N R
Sbjct: 347 ELEQLP-----DDYIPISVLTNQNINLIEDRINQLFFDNAGLVEQDA---TYLSNARHIS 398
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + + +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 399 LIEKAVQSLEAVNDGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458
>gi|71903433|ref|YP_280236.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS6180]
gi|123639929|sp|Q48TS5.1|MNME_STRPM RecName: Full=tRNA modification GTPase MnmE
gi|71802528|gb|AAX71881.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Streptococcus pyogenes MGAS6180]
Length = 458
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 272/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+ I VFK G + SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTDALAIAQSVFK----------GKNLEQVASHTIN 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G ++DEV+ MLAP+++TRE+VVE+ HG +L+ + GA +A+
Sbjct: 55 YGHIIDPKTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A A+ + G S L+ R + + L
Sbjct: 115 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +EN L TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 235 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D LLN Q + + I+++NK D
Sbjct: 295 ERSKKALQEADLVLLVLNASEKLTDQDRALLNLSQGSNR--------IILLNKTDLEQKI 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E D + +T Q I +E I ++ GL + A + N R
Sbjct: 347 ELEQLPA-----DLISISVLTNQNINLIEDRINQLFFDNAGLVEQDA---TYLSNARHIS 398
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + + +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 399 LIEKAVQSLEAVNDGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458
>gi|58338215|ref|YP_194800.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus NCFM]
gi|227902598|ref|ZP_04020403.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus ATCC 4796]
gi|75357100|sp|Q5FHQ5.1|MNME_LACAC RecName: Full=tRNA modification GTPase MnmE
gi|58255532|gb|AAV43769.1| thiophene and furan oxidation protein [Lactobacillus acidophilus
NCFM]
gi|227869687|gb|EEJ77108.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus ATCC 4796]
Length = 461
Score = 301 bits (770), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 174/477 (36%), Positives = 277/477 (58%), Gaps = 27/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T IG G + IVR+SG A+ I VFK G+ + +H +
Sbjct: 8 FDTIAAISTPIG--EGGISIVRMSGEDAIKIANEVFK----------GADLAQVPTHTIH 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G +DE + + AP+++T ED+VE+ CHG V +L+ L+ GA +A
Sbjct: 56 YGHIIDPDTGKTIDESMVTVLRAPKTFTCEDIVEINCHGGIVVTNHILQLLLKHGARMAD 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V ++ AK+ A A++ ++GG + ++R + ++ L
Sbjct: 116 PGEFTKRAFVNGRIDLTQAESVMDIVRAKTDKARQVAVSQLEGGLLHKIRTMRQEILDTL 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+E +D+ + + + N + D ++ + ++ L+TA K+L++GL AIVG+PNV
Sbjct: 176 ANVEVNIDYPEYDADTVTANQMADTAKSVIEKIDRLLKTAQEGKILRNGLATAIVGQPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ++S++AIVT++AGTTRD +E V+V GVP+ L+DTAGI TDD VEKIGVE
Sbjct: 236 GKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTDDKVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ + A T+ED L+N S K+ I+++NK D +
Sbjct: 296 RSKKALERADLVLLLIDASKELTAEDKSLINETDSKKR--------IIILNKSDLGQKIT 347
Query: 450 NEWNK--VGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
E K G+ + T + + +LE I K+ + + NQRQ L
Sbjct: 348 VEQMKKLTGSEV---ISTSILKEDNMDELEELINKLFFAGIENSNDQVMVTNQRQTSLLH 404
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K L + ++++ +P+D ID A LG+I+GE +E+++ +F +FC+GK
Sbjct: 405 KAKSELEDVIQAVDDGIPVDIAQIDFTGAWDTLGEITGESAPDELITQLFSQFCLGK 461
>gi|392331590|ref|ZP_10276205.1| tRNA modification GTPase TrmE [Streptococcus canis FSL Z3-227]
gi|391419269|gb|EIQ82081.1| tRNA modification GTPase TrmE [Streptococcus canis FSL Z3-227]
Length = 458
Score = 301 bits (770), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 181/480 (37%), Positives = 273/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+ I VFK G + TSH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTEALTIAKSVFK----------GKDLEKVTSHTIN 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + +VDEV+ MLAP+++TRE+VVE+ HG +L+ + GA +A+
Sbjct: 55 YGHIVDPKTEAIVDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A A+ + G S L+ S R + + L
Sbjct: 115 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINSTRQEILNTL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +EN L TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTTALLREKTQEFQNLLENLLRTAKRGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 235 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D LLN Q + + I+++NK D
Sbjct: 295 ERSKKALQEADLVLLVLNASEKLTEQDRALLNLSQDSNR--------IILLNKADLEQKI 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +D + +T I +E I ++ GL + A + N R
Sbjct: 347 ELEQLP-----DDCISISVLTNHNIDLIEDRINQLFFDNAGLVEQDA---TYLSNARHIS 398
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + + +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 399 LIEKAVQSLKAVNEGLALGMPVDLLQVDLTRTWEILGEITGDATPDELITQLFSQFCLGK 458
>gi|302390791|ref|YP_003826612.1| tRNA modification GTPase trmE [Thermosediminibacter oceani DSM
16646]
gi|302201419|gb|ADL08989.1| tRNA modification GTPase trmE [Thermosediminibacter oceani DSM
16646]
Length = 462
Score = 301 bits (770), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 179/476 (37%), Positives = 279/476 (58%), Gaps = 19/476 (3%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
T TIAAI T +G G++GIVR+SG + I +F+P KK+ +P + +
Sbjct: 4 TGDTIAAISTPLG--EGSIGIVRISGEDSFRIASEIFRP-----KKNIDPSEMKPRTMYL 56
Query: 151 EYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
G ++D G V+DEVL V AP +YTRE++VE+ CHG RR+L L GA +A
Sbjct: 57 --GSIVDPGSGEVIDEVLLVKYKAPFTYTRENMVEINCHGGFTVQRRILEVVLGRGARVA 114
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V +I AK+ A + A+ ++GG S + VR + + +
Sbjct: 115 EPGEFTKRAFLNGRIDLSQAEAVIDIIRAKTDRALNVAVNQLKGGLSERIREVRQRILRI 174
Query: 270 LTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+ IEA +DF +D++P + + + + I + ++E L+ A K+++ GL I+GRPN
Sbjct: 175 IAHIEANIDFPEDDIPEADPDTIREDIRGIRVELEELLKKAQAGKIMREGLSTVILGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + +RAIVT+I GTTRD+IE + + G+PV ++DTAGIRET D VEKIGV
Sbjct: 235 VGKSSLLNSLLREKRAIVTDIPGTTRDIIEEYLNINGIPVKIVDTAGIRETCDAVEKIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ER+ A+++++ + A D ED ++ ++ +I+V+NK D
Sbjct: 295 ERALESLKEAELVLLMLDASDELREEDRAIMELVKDKF--------VIVVLNKTDLPEKL 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
S + K + A+ +GI++L+ AI + V P R + +
Sbjct: 347 SVDEVKSAFPGKPLIRVSALREKGIEELKEAIYRAVTEEIGPVDEGVIVTRARHSQAVKN 406
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
EAL R +S++ +P++ +++R+A LG+I+G+ + E+V++ IF FCIGK
Sbjct: 407 AVEALERAESALSSGIPMEMVAMEVREAWERLGEITGDTVREDVVNAIFENFCIGK 462
>gi|94988539|ref|YP_596640.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS9429]
gi|417856948|ref|ZP_12502007.1| tRNA modification GTPase TrmE [Streptococcus pyogenes HKU
QMH11M0907901]
gi|166234823|sp|Q1JLX3.1|MNME_STRPC RecName: Full=tRNA modification GTPase MnmE
gi|94542047|gb|ABF32096.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Streptococcus pyogenes MGAS9429]
gi|387933903|gb|EIK42016.1| tRNA modification GTPase TrmE [Streptococcus pyogenes HKU
QMH11M0907901]
Length = 458
Score = 301 bits (770), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 272/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+ I VFK G + SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTDALAIAQSVFK----------GKNLEQVASHTIN 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G ++DEV+ MLAP+++TRE+VVE+ HG +L+ + GA +A+
Sbjct: 55 YGHIIDPKTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A A+ + G S L+ R + + L
Sbjct: 115 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +EN L TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 235 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D LLN Q + + I+++NK D
Sbjct: 295 ERSKKALQEADLVLLVLNASEKLTDQDRALLNLSQDSNR--------IILLNKTDLEQKI 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E D + +T Q I +E I ++ GL + A + N R
Sbjct: 347 ELEQLPA-----DLIPISVLTNQNINLIEDRINQLFFDNAGLVEQDA---TYLSNARHIS 398
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + + +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 399 LIEKAVQSLEAVNDGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458
>gi|366163648|ref|ZP_09463403.1| tRNA modification GTPase TrmE [Acetivibrio cellulolyticus CD2]
Length = 460
Score = 300 bits (769), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 183/476 (38%), Positives = 274/476 (57%), Gaps = 27/476 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI AI T G G +GI+RLSG A +I +F+ K K +H + YG
Sbjct: 7 TITAISTPHGN--GGIGIIRLSGERAFEISEGIFQGKKDFDK---------VKTHTINYG 55
Query: 154 VVLDRH-GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D G V+DEVL M P ++TREDVVE+ CHG V L+ +L L+ GA LA+PG
Sbjct: 56 KIIDSSTGEVLDEVLISKMCKPNTFTREDVVEINCHGGTVVLKNILELILKKGARLAEPG 115
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQAE V LI+AK+ ++ AA+ ++G S + R+K IEL+
Sbjct: 116 EFTKRAFLNGRIDLSQAEAVIDLINAKTNESSKAAVDQLEGKLSVKLKEARSKLIELIAH 175
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IE +D+ + ++ + + +I + + + + +E ++++ G+ IVGRPNVGK
Sbjct: 176 IEVTVDYPEHDIEEITGQKIYTEIKDIKEKLSSIIEGFEKGRIIREGINAVIVGRPNVGK 235
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLN + RAIVT+I GTTRD+IE + + GVPV ++DTAGIRET+D+VEKIGVE++
Sbjct: 236 SSLLNELTGKSRAIVTDIPGTTRDIIEDYINLNGVPVRIIDTAGIRETEDVVEKIGVEKT 295
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS-- 449
AD+IIM + A G ED ++LN I+++NKID
Sbjct: 296 HKEVDSADLIIMMIDADQGVNQEDIDILN--------KIKEKKAIIILNKIDMVSEDKIL 347
Query: 450 NEWNKVGNSFNDHVFTCAVTGQ-GIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ NK+GN +V ++ G DL A++++ ++ N R + +
Sbjct: 348 DIENKLGNK---NVIRMSLKEDVGTADLGNAVVELFMKGEVSINNEVLITNIRHKNLIDK 404
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
E++ + E +PLD TID+ ++A LG+I+GE +SE+V+ IF +FC+GK
Sbjct: 405 AIESIDFAIGAHESGMPLDMITIDIVNSAQYLGEITGESVSEDVMHEIFSRFCLGK 460
>gi|399889382|ref|ZP_10775259.1| tRNA modification GTPase TrmE [Clostridium arbusti SL206]
Length = 459
Score = 300 bits (769), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 182/482 (37%), Positives = 281/482 (58%), Gaps = 35/482 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++G G + I+R+SG +V+IV +F P SG + +
Sbjct: 4 FDTIAAIATALG--EGGISIIRISGKNSVNIVDSIFVP-------KSGDSILNIKPYTMR 54
Query: 152 YGVVLDR-HGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG +++ + +DEV+ M PRS+T E+V+E+ CHG +R+L L+AGA +A+
Sbjct: 55 YGNIVESGTKDNIDEVIISFMKGPRSFTAENVIEINCHGGIFSTKRILEEVLKAGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I+AK+ A+ AA+ +G S + ++R + +EL+
Sbjct: 115 PGEFTKRAFLNGRIDLSQAEAVMDIITAKTDASMKAAVMQSEGRISKEINTLREELLELI 174
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IEA +D+ +D++ L + K+ + +E + +A+ K+L+ GL AIVG+PNV
Sbjct: 175 AHIEATVDYPEDDLEELTSENTVKKLKIILYKIELLINSADEGKILRDGLSTAIVGKPNV 234
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA + +RAIVTEI GTTRDVIE + V G+P+ L+DTAGIR+T+DIVEKIGVE
Sbjct: 235 GKSSLLNALLEEKRAIVTEIEGTTRDVIEEYINVSGIPIKLIDTAGIRQTEDIVEKIGVE 294
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S+ AD++I + + +D +++ I++ K I+++NKID P
Sbjct: 295 KSKKKIDEADLVIFILDSSRNLDEKDLDIIRYIKNKK--------YIILLNKIDL-PKKI 345
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
N + G + A G GI L+ + ++ +I + Q R
Sbjct: 346 NREDLKGLDSKYIIDISAKNGFGIDRLKKLVKELFFNGEIKS--------QDLIITNTRH 397
Query: 510 KEALVRLKSSIEEEL-------PLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCI 562
K AL++ KS+ EE + +D +ID+R+A LG I+G+ + E+++ IF FC+
Sbjct: 398 KAALIKAKSNCEEAINALKNTSAIDLASIDIRNAWYDLGYITGDTMEEDLIEKIFKNFCL 457
Query: 563 GK 564
GK
Sbjct: 458 GK 459
>gi|373456070|ref|ZP_09547875.1| tRNA modification GTPase TrmE [Dialister succinatiphilus YIT 11850]
gi|371934225|gb|EHO62029.1| tRNA modification GTPase TrmE [Dialister succinatiphilus YIT 11850]
Length = 459
Score = 300 bits (769), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 181/473 (38%), Positives = 273/473 (57%), Gaps = 19/473 (4%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
+TIAAI T+ G G +GIVR+SG A D+ +F KK + P + + +
Sbjct: 5 TTIAAIATAPG--EGGIGIVRISGSQAADVADALFHT-----KKIASFHEAEP--YRLYF 55
Query: 153 GVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
G V+ R VDE LAV M AP SYT EDVVE+Q HGS LR L LE GA A G
Sbjct: 56 GHVV-RKDQRVDEGLAVYMKAPHSYTGEDVVEIQIHGSTEALRETLELALENGALPASRG 114
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGRLDL+QAE V +I A+ AA A + + G S V R + +L+T+
Sbjct: 115 EFTKRAFLNGRLDLTQAEAVMDIIEARGSAALSQAESHLSGALSRFVKMSRDELTDLITK 174
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
+E +D+ ++++ L + + + + + + + L+ + ++++ GL+ AIVGRPN GK
Sbjct: 175 LEVTIDYPEEDLEDLTNEQIGEGLDGIEKSLSSLLKRSEEGRIIKDGLRTAIVGRPNAGK 234
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLNA + +RAIVT+I GTTRD IE S+ + GVP+ L+DTAG+RETD+ VEKIG+ER+
Sbjct: 235 SSLLNALLQEDRAIVTDIPGTTRDTIEESIKIGGVPLVLMDTAGLRETDNKVEKIGIERA 294
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
+ AD+++ + ED ELL+ ++ K ++++NK D E
Sbjct: 295 KKSMEQADLVLAVIDGSHALEKEDKELLSSLKGRKS--------MVILNKYDLPQEVDEE 346
Query: 452 WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKE 511
K V A G G+++LE A+ ++ AG R + N R + + + E
Sbjct: 347 EIKALAGDAPVVSLSARYGSGMEELEEALRRLTETQDRDAGRRLFLTNLRHVDLVKKALE 406
Query: 512 ALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
A+ R + S+++ +P D T+DL +A +G+I+GE + E+++ IF +FC+GK
Sbjct: 407 AVRRAQQSLKDGMPADCITVDLVEAWNRMGEITGETVDNELINKIFERFCVGK 459
>gi|310659884|ref|YP_003937605.1| GTPase [[Clostridium] sticklandii]
gi|308826662|emb|CBH22700.1| GTPase [[Clostridium] sticklandii]
Length = 459
Score = 300 bits (769), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 184/479 (38%), Positives = 269/479 (56%), Gaps = 33/479 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAA+ T+ G +GIVRLSGP A+DI ++FKP+K G+ + YG
Sbjct: 6 TIAAVATAPG--EAGIGIVRLSGPKALDIANKIFKPIK-------GNTDLSMQVRKLVYG 56
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
V D+ V+DEVL M P ++TREDVVE+ CHG + +R++L A + GA LA GE
Sbjct: 57 HVYDQD-KVIDEVLISYMKKPHTFTREDVVEINCHGGYISVRKILEAVIRNGARLADRGE 115
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGR+DLSQAE + +I+AK+ A+ D A ++G S+ + +R K L +I
Sbjct: 116 FTKRAFLNGRIDLSQAEAIIDIINAKTNASFDIAQKHLEGNLSASIKQIRDKLTMDLAKI 175
Query: 274 EARLDFDDEMPP--------LNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVG 325
+DF +E P ++L VM I + E K+L+ GL+ IVG
Sbjct: 176 TVAIDFPEEDEPEVTYEELSVDLREVMTSIKGLIASFETG-------KILRDGLKTVIVG 228
Query: 326 RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEK 385
+PNVGKSSLLNA K RAIVTEI GTTRD+IE V + G+P+ ++DTAGIRETDD+VEK
Sbjct: 229 KPNVGKSSLLNAILKESRAIVTEIEGTTRDIIEEYVNIGGIPLKIVDTAGIRETDDLVEK 288
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445
IGV++S+ AD++IM + + +++D ++L+ + K I+++NK D
Sbjct: 289 IGVQKSKESFESADLVIMMLDSSRHLSNQDQDILSLLGDKK--------AIILVNKTDLP 340
Query: 446 PSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+++ + A+ +GI LE I +V + N R
Sbjct: 341 SMVTDDEIHNYAKGKPIIRISALEKKGIDLLEKEIENMVLEGSLKTQNDIMVTNARHKMA 400
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L R EA +++ + +PLD D ++A LG I+G+ +SE++L IF +FCIGK
Sbjct: 401 LERAFEACSDALTALADNIPLDIAETDFKNAWNELGHITGDTVSEDLLDTIFREFCIGK 459
>gi|357238961|ref|ZP_09126297.1| tRNA modification GTPase TrmE [Streptococcus ictaluri 707-05]
gi|356752683|gb|EHI69808.1| tRNA modification GTPase TrmE [Streptococcus ictaluri 707-05]
Length = 458
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 274/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+ I VFK G + SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGSQALAIANSVFK----------GKALDKVASHTIN 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++ ++DEV+ MLAP+++TREDV+E+ HG +L+ L GA +A+
Sbjct: 55 YGHIIDPKNNQIIDEVMVTVMLAPKTFTREDVIEINTHGGIAVTNEILQLLLRQGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V LI AK+ A A+ + G + L+ + R + + L
Sbjct: 115 PGEFTKRAFLNGRVDLTQAEAVMDLIRAKTDKAMAIAVKQLDGSLAQLINNTRQEILNTL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +EN L TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTTALMREKTKVFQSLLENLLRTAKRGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+IAGTTRDVIE V + GVP+ L+DTAGIR+TDDIVEKIGV
Sbjct: 235 VGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D LL Q + + I+++NK D P
Sbjct: 295 ERSKKALQEADLVLLVLNASEALTEQDRLLLELSQGSNR--------IILLNKTDL-PQL 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
+ N+ V + + I +E I ++ GL + A + N R
Sbjct: 346 IEKEQLPENTIEISV----IQNKNIDQIEDRINQLFFDNAGLVEHDA---TYLSNARHIS 398
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + ++ +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 399 LIEQAVQSLQAVNEGLDLGMPVDLLQVDMTRTWQILGEITGDAAPDELITQLFSQFCLGK 458
>gi|260425018|ref|ZP_05733999.2| tRNA modification GTPase TrmE [Dialister invisus DSM 15470]
gi|260403939|gb|EEW97486.1| tRNA modification GTPase TrmE [Dialister invisus DSM 15470]
Length = 485
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 187/503 (37%), Positives = 282/503 (56%), Gaps = 40/503 (7%)
Query: 68 NTLVFKKDERLVADNGESEEKAGTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVF 127
NTL F K++ + + +TIAAI T+ G G +GI+RLSG A +I ++F
Sbjct: 17 NTLYFMKEQSMYEE-----------TTIAAIATAPG--EGGIGIIRLSGVSAAEIADKIF 63
Query: 128 KPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQC 187
K K K + +++ +G V D + DE LAV M AP SYT EDVVE+Q
Sbjct: 64 HTGKIKTFKEA-------VPYMMYFGHVTDGEKRI-DEGLAVYMKAPHSYTGEDVVEIQI 115
Query: 188 HGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAA 247
HGS LR L L +GA A GEFT RAFLNGRLDL+QAE V +ISAK AA A
Sbjct: 116 HGSAEALRETLALALRSGAVPAMRGEFTKRAFLNGRLDLAQAEAVMDIISAKGEAALTQA 175
Query: 248 LAGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAL 306
+ + G S V V + +L+T++E +D+ ++++ L + D + + + + L
Sbjct: 176 ESHLSGALSGFVHGVMEELKDLITKLEVTIDYPEEDLEDLTMEETGDALEKIDKSLSALL 235
Query: 307 ETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV 366
+ + ++++ GL+ AI+GRPN GKSSLLNA + ERAIVT++ GTTRD IE +V + GV
Sbjct: 236 KRSEEGRVIREGLRTAIIGRPNAGKSSLLNALLQEERAIVTDVPGTTRDTIEEAVRISGV 295
Query: 367 PVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNK 426
+ L+DTAG+RETD+ VE+IG+ER+ A AD+I+ + ED E+L+ + K
Sbjct: 296 SLLLMDTAGLRETDNKVEQIGIERARASMEKADLILAVIDGSSPLDEEDKEILHSLVGKK 355
Query: 427 KSTESSTPMILVINKIDCAPSASNE--WNKVGNSFNDHVFTCAVT---GQGIQDLETAIM 481
I+++NK D P E W G HV +++ G G+ +L +
Sbjct: 356 A--------IVILNKYDLTPEVKAEDIWEIAG-----HVPVVSLSARYGSGMDELREELR 402
Query: 482 KIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALG 541
KI AG + N R E + + + ++R ++S+ E L DF IDL +A +G
Sbjct: 403 KITEKQDTDAGRILFLTNLRHVELVRKALDNVLRARASVREGLQADFIVIDLTEAWKTMG 462
Query: 542 QISGEDISEEVLSNIFGKFCIGK 564
+I+G+ + +E++ +IF +FC+GK
Sbjct: 463 EITGDTMDDELIHSIFSRFCVGK 485
>gi|219856806|ref|YP_002473928.1| hypothetical protein CKR_3463 [Clostridium kluyveri NBRC 12016]
gi|219570530|dbj|BAH08514.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 465
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 168/476 (35%), Positives = 284/476 (59%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G G + I+R+SG ++ I +F+ K +P S +
Sbjct: 10 FDTITAIATVLG--EGGISIIRISGENSLSIANSIFRG-----KNHRDLLDIKPYS--MR 60
Query: 152 YGVVLDRH-GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++++ G ++DEVL M P+SYT ED+VE+ CHG + R+V+ ++AGA LA+
Sbjct: 61 YGFIIEKDTGEILDEVLVSFMKGPKSYTAEDIVEINCHGGVLATRKVMEEVIKAGARLAE 120
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I AKS + +A+ QG S + +R + +E++
Sbjct: 121 PGEFTKRAFLNGRIDLSQAEAVIDIIRAKSHISVKSAVQQSQGKISKEINLLREELLEII 180
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IEA +++ ++++ + + + KI+ + ++ L A K+++ GL + IVG+PNV
Sbjct: 181 AHIEATVNYPEEDLEEMTSDQIYLKINKILDEINYILSNAEEGKIVREGLSVVIVGKPNV 240
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN+ + +AIVT+I GTTRDVIE + + G+P+ ++DTAGIR+TDDIVEKIGVE
Sbjct: 241 GKSSLLNSLIEENKAIVTDIPGTTRDVIEEYMNIGGIPIKIVDTAGIRKTDDIVEKIGVE 300
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S+ +D++I+ + + ED E++N + K I+++NK D
Sbjct: 301 KSKEKIDESDLVILMLDSSKELDEEDKEIINYVNHRK--------YIILLNKTDIGDKI- 351
Query: 450 NEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ N + N + + ++ G+G+ ++ I ++ +I + + N R E L+R
Sbjct: 352 -DLNDICNLNSRFIIKTSIKNGEGLDKIKNCIKELFFKGEIKSED-LFITNTRHKEGLIR 409
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
KE+ + +++ L +D +ID+++A + LG+I+G+ + E+++ IF +FC+GK
Sbjct: 410 AKESCIEALQTLKSTLSIDLVSIDIKNAWINLGKITGDTLEEDIIDKIFSQFCLGK 465
>gi|34763011|ref|ZP_00143987.1| THIOPHENE AND FURAN OXIDATION PROTEIN THDF [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|27887312|gb|EAA24406.1| THIOPHENE AND FURAN OXIDATION PROTEIN THDF [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
Length = 455
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 175/480 (36%), Positives = 281/480 (58%), Gaps = 34/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T G G + IVR+SG +++I+ ++FKP K KK S ++ +
Sbjct: 3 LDTIAAISTPRG--EGGISIVRMSGQDSLNILEKIFKP---KNKKVSELKNYS-----IN 52
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG ++D ++VDEVL M AP +YTRED++E+ CHG + +VL L+ GA +A+
Sbjct: 53 YGHIIDNE-HIVDEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVVLKNGARIAEI 111
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V +I K+ + +L ++G + +++ ++L
Sbjct: 112 GEFTKRAFLNGRIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAA 171
Query: 272 EIEARLDF-----DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
I LD+ DD +P NLV D + S ++ + + + N K+++ G++ AI+G+
Sbjct: 172 HINVVLDYPEEGIDDPVPE---NLV-DNLKKASAEIRDLVSSYNKGKIIKDGIKTAIIGK 227
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSS+LN+ + +RAIVT I GTTRD+IE + + G+P+ L+DTAGIR TDDIVE I
Sbjct: 228 PNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLIDTAGIRNTDDIVENI 287
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVE+S+ + AD+I+ + ED + + I ++K +I ++NKID
Sbjct: 288 GVEKSKELINSADLILYVIDTSREIDEEDYRIYDIINTDK--------VIGILNKIDIKR 339
Query: 447 SAS-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCE 504
+ +E+ K+ + A++ GI +LE I K + + ++ + N R
Sbjct: 340 NTDLSEFPKI----EKWIEISALSKTGIDNLENEIYKYIMKENVEDSSQKLVITNVRHKS 395
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L +T EAL+ + +I+ LP+D +D++DA +L +++GE SE++L +IF FC+GK
Sbjct: 396 ALEKTNEALLNIIETIDMGLPMDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455
>gi|94994338|ref|YP_602436.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS10750]
gi|166234825|sp|Q1J6U1.1|MNME_STRPF RecName: Full=tRNA modification GTPase MnmE
gi|94547846|gb|ABF37892.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Streptococcus pyogenes MGAS10750]
Length = 458
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 181/480 (37%), Positives = 271/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+ I VFK G + SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTDALAIAQSVFK----------GKNLEQVASHTIN 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G +VDEV+ MLAP+++TRE+VVE+ HG +L+ + GA +A+
Sbjct: 55 YGHIIDPNTGTIVDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A A+ + G S L+ R + + L
Sbjct: 115 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +EN L TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 235 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D LLN Q + + I+++NK D
Sbjct: 295 ERSKKALQEADLVLLVLNASEKLTDQDRALLNLSQDSNR--------IILLNKTDLEQKI 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E D + +T Q I +E I ++ GL + A + N R
Sbjct: 347 ELEQLPA-----DLISISVLTNQNINLIEDRINQLFFDNAGLVEQDA---TYLSNARHIS 398
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + + +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 399 LIEKAVQSLEAVNDGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458
>gi|414564203|ref|YP_006043164.1| tRNA modification GTPase TrmE [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
gi|338847268|gb|AEJ25480.1| tRNA modification GTPase TrmE [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
Length = 458
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 178/477 (37%), Positives = 270/477 (56%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG A+DI +FK G SH +
Sbjct: 7 FDTIAAISTPLG--EGAIGIVRLSGTKALDIAKSIFK----------GKDLTTVASHTLN 54
Query: 152 YG-VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++ G V+DEV+ MLAP+++TREDV+E+ HG +L+ ++ GA +A+
Sbjct: 55 YGHIIRPSTGEVIDEVMVSVMLAPKTFTREDVIEINTHGGIAVTNDILQLLIKQGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V LI AK+ A A+ + G S L+T+ R + + L
Sbjct: 115 PGEFTKRAFLNGRIDLTQAEAVMDLIRAKTDKAMSIAIKQLDGSLSQLITNTRQEILNTL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ DK +E L TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTTALLRDKTQEFQALLEQLLRTAKRGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + G+P+ L+DTAGIRETDD+VE+IGV
Sbjct: 235 VGKSSLLNTLLREDKAIVTDIAGTTRDVIEEYVNIKGIPLKLVDTAGIRETDDLVEQIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D LL Q + + I+++NK D
Sbjct: 295 ERSKKALQEADLVLLVLNASEKLTEQDKALLALSQDSNR--------IILLNKTDLKQVI 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
+ + + + Q I +E I ++ H + + N R +
Sbjct: 347 EKDQLP-----EEAIPISVLQNQNIDLIEDRINQLFFDHTGLIEQDATYLSNARHISLIE 401
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++L + + +P+D IDL A LG+I+G+ +E+++ +F +FC+GK
Sbjct: 402 QAVQSLEAVNEGLALGMPVDLLQIDLTRAWEILGEITGDAAPDELITQLFSQFCLGK 458
>gi|225868377|ref|YP_002744325.1| tRNA modification GTPase TrmE [Streptococcus equi subsp.
zooepidemicus]
gi|225701653|emb|CAW98957.1| tRNA modification GTPase TrmE [Streptococcus equi subsp.
zooepidemicus]
Length = 458
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 178/477 (37%), Positives = 270/477 (56%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG A+DI +FK G SH +
Sbjct: 7 FDTIAAISTPLG--EGAIGIVRLSGTKALDIAKSIFK----------GKDLTTVASHTLN 54
Query: 152 YG-VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++ G V+DEV+ MLAP+++TREDV+E+ HG +L+ ++ GA +A+
Sbjct: 55 YGHIIRPSTGEVIDEVMVSVMLAPKTFTREDVIEINTHGGIAVTNDILQLLIKQGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V LI AK+ A A+ + G S L+T+ R + + L
Sbjct: 115 PGEFTKRAFLNGRIDLTQAEAVMDLIRAKTDKAMSIAIKQLDGSLSQLITNTRQEILNTL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ DK +E L TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTTALLRDKTQEFQALLEQLLRTAKRGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + G+P+ L+DTAGIRETDD+VE+IGV
Sbjct: 235 VGKSSLLNTLLREDKAIVTDIAGTTRDVIEEYVNIKGIPLKLVDTAGIRETDDLVEQIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D LL Q + + I+++NK D
Sbjct: 295 ERSKKALQEADLVLLVLNASEKLTEQDKALLALSQDSNR--------IILLNKTDLEQVI 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
+ + + + Q I +E I ++ H + + N R +
Sbjct: 347 EKDQLP-----EEAIPISVLQNQNIDLIEDRINQLFFDHTGLIEQDATYLSNARHISLIE 401
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++L + + +P+D IDL A LG+I+G+ +E+++ +F +FC+GK
Sbjct: 402 QAVQSLEAVNEGLALGMPVDLLQIDLTRAWEILGEITGDAAPDELITQLFSQFCLGK 458
>gi|408789714|ref|ZP_11201359.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Lactobacillus florum
2F]
gi|408520992|gb|EKK21002.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Lactobacillus florum
2F]
Length = 463
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 189/480 (39%), Positives = 281/480 (58%), Gaps = 31/480 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
+ TIAAI T PPG + IVR+SG A+ +V +VF SG + +H
Sbjct: 8 YDTIAAIST----PPGVGGIAIVRVSGSTAIALVEKVF----------SGPDLTKVATHT 53
Query: 150 VEYGVVLDR--HGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
+ YG ++D H VDEV+ M AP++YT+ED+VE+ CHG +VL+ L GA
Sbjct: 54 INYGHLIDAGAHRETVDEVMVTVMRAPQTYTKEDIVEINCHGGIEVTNQVLQLVLRQGAR 113
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
LA+PGEFT RAFLNGR+DLSQ+E V LI AK+ A AAL + G S +V +R + +
Sbjct: 114 LAEPGEFTKRAFLNGRIDLSQSEAVMDLIDAKTATAQKAALNQLDGSLSRVVKRLRQELV 173
Query: 268 ELLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVG 325
+LL +E +D+ D + L+ K + + Q+++ L+T K+L+ GL+ AIVG
Sbjct: 174 DLLANVEVNIDYPEYDGAETVTTKLMQTKTNKIMQELDELLQTEQQGKILRDGLETAIVG 233
Query: 326 RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEK 385
RPNVGKSSLLN +AIVT++ GTTRDV++ V V GVP+ L+DTAGIR+TD+ VEK
Sbjct: 234 RPNVGKSSLLNCLLHENKAIVTDVPGTTRDVLDEYVNVRGVPLHLIDTAGIRKTDNQVEK 293
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445
IGV+RS+A AD++++ ++A + T+ D ELL Q +K+ I+++NK D
Sbjct: 294 IGVDRSKAALKKADLVLLVLNASEKLTAGDRELLAATQDSKR--------IILLNKTDLP 345
Query: 446 PSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCE 504
E +++ + T AV G + LE A+ K+ + + V N RQ
Sbjct: 346 ELI--ELDQLDVPKATLIKTSAVAENGTRALEAALAKLFFEEGVTSTQLDVMVTNARQAS 403
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + + AL + +++ LP+D IDL+ A LG+I+G++ +E++ +F KFCIGK
Sbjct: 404 LLEQARSALQAVLEGLKQGLPVDIVQIDLQRAWEFLGEITGDNYDDELMDQLFKKFCIGK 463
>gi|56965874|ref|YP_177608.1| tRNA modification GTPase TrmE [Bacillus clausii KSM-K16]
gi|81821939|sp|Q5WAG3.1|MNME_BACSK RecName: Full=tRNA modification GTPase MnmE
gi|56912120|dbj|BAD66648.1| tRNA modification GTPase [Bacillus clausii KSM-K16]
Length = 458
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 179/475 (37%), Positives = 269/475 (56%), Gaps = 21/475 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T++G GA+GIVRLSG A+ I ++FK K+ + SH +
Sbjct: 3 MDTIAAISTALG--EGAIGIVRLSGDQAIAIGDKLFKGTKRLED---------TPSHTIV 51
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++E + M APR+YTRED+VE+ CHG V + RVL+A L GA LA+
Sbjct: 52 YGHLMDDASEEAIEEAMVTVMRAPRTYTREDIVEINCHGGLVSVNRVLQAVLAKGARLAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI +K+ A + AL ++G S + +R +E +
Sbjct: 112 PGEFTKRAFLNGRIDLSQAEGVIDLIRSKTDRAMNVALRQVEGRLSKKIGKLRQALLETI 171
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IE +D+ + + + L+ +K+ + ++E L TA K+L+ GL AI+GRPNV
Sbjct: 172 ASIEVNIDYPEYDAETMTAKLINEKMTIVLAEIEALLATAKQGKVLREGLATAIIGRPNV 231
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSL+N+ +AIVT+I GTTRD +E V V GVP+ L+DTAGIRET+DIVE+IGVE
Sbjct: 232 GKSSLMNSLVHEAKAIVTDIPGTTRDTLEEYVNVRGVPLRLIDTAGIRETEDIVERIGVE 291
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS AD+I++ ++ + + ED L ++ +++++NKID
Sbjct: 292 RSRQALKEADLILLVLNYAEKLSKEDEALFEAVK--------GLDVVVIVNKIDQTGRID 343
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
E + N V T + +G+ LE AI ++ + + N R L +
Sbjct: 344 MERVRQLAGENPVVATSFLQEEGVDQLEEAISRLFFAGGVEGADLTYVSNARHIGLLNQA 403
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K ++ ++P+D ID+ LG+I GED+ + ++ +F +FC+GK
Sbjct: 404 KAHAEEAIAASLTDVPVDLIQIDVTRTWELLGEIIGEDVQDSLIDQLFSQFCLGK 458
>gi|295108622|emb|CBL22575.1| tRNA modification GTPase trmE [Ruminococcus obeum A2-162]
Length = 457
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 183/478 (38%), Positives = 278/478 (58%), Gaps = 29/478 (6%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
+TIAAI T++ +GIVR+SG A+D++ +++ K KK GS H + Y
Sbjct: 3 ATIAAISTAM--SASGIGIVRISGEKAMDVIANIYRS-KNGKKDIREVGS-----HTIHY 54
Query: 153 GVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
G + D VVDEVL + M P +YT ED VE+ CHG ++RVL L+ GA +A+PG
Sbjct: 55 GFIYDGE-EVVDEVLVMIMKGPHTYTGEDTVEIDCHGGVYAMKRVLETVLKNGAIIAEPG 113
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGRLDLSQAE V +I AK+ A +++ ++G + +RA+ + +
Sbjct: 114 EFTKRAFLNGRLDLSQAEAVMDVIQAKNSMALKSSVEQLKGSVQKAIREIRARLLHQIAY 173
Query: 273 IEARLD----FDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
IE LD FD P L +++K S+++ N L+TA+ +++Q G++ I+G+PN
Sbjct: 174 IETALDDPEHFDLTGYPQELLEIVEK---ESENISNLLKTADDGRMIQEGIKTVILGKPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
GKSSLLN +RAIVTEIAGTTRD++E +++ G+ + ++DTAGIRET+DIVEKIGV
Sbjct: 231 AGKSSLLNFLVGEDRAIVTEIAGTTRDILEEYISLNGITLRMIDTAGIRETEDIVEKIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
+++ +A AD+I+ V + D E++ + S +KS I++ NK D +
Sbjct: 291 GKAKQMAEDADLILYVVDSSLPLDENDREIM-ELLSGRKS-------IVIYNKTDLEAAV 342
Query: 449 SNEW--NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
S E K G+ + V G++ LE I ++ ++ + N R L
Sbjct: 343 SIEELKEKTGSPV---IPVSVVEETGLRQLEDEIRRMFFHGELSFNDEVYITNARHKAAL 399
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
KE+L +K SI + DF++IDL A +LG+I GE + E++++ IF KFC+GK
Sbjct: 400 EEAKESLKLVKESINMGMAEDFFSIDLMSAYESLGRIVGESVGEDLVNEIFSKFCVGK 457
>gi|239637283|ref|ZP_04678270.1| tRNA modification GTPase TrmE [Staphylococcus warneri L37603]
gi|239597120|gb|EEQ79630.1| tRNA modification GTPase TrmE [Staphylococcus warneri L37603]
Length = 459
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 174/478 (36%), Positives = 271/478 (56%), Gaps = 26/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI +I T +G GA+GIVRLSGP AV+I +++K K + S H +
Sbjct: 3 FDTITSISTPMG--EGAIGIVRLSGPQAVEIGDKLYKGKKPLAEVDS---------HTIN 51
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D V+EV+ + AP+++TRED++E+ CHG + + R+L + GA +A+
Sbjct: 52 YGHIIDPETSETVEEVMISVLRAPKTFTREDIIEINCHGGILTINRILELTMTHGARMAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGE+T RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+L
Sbjct: 112 PGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRQSILEIL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ ++ + + Q++ LET K+++ GL IVGRPN
Sbjct: 172 AQVEVNIDYPEYDDVEDATTEFLLQQSKNIKQEINQLLETGAQGKIMREGLSTVIVGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIR+T+DIVEKIGV
Sbjct: 232 VGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD+I+ ++ + T +D L + +++ +I++INK D
Sbjct: 292 ERSRKALSQADLILFVLNNNEALTEDDQTLYDVVKNE--------DVIVIINKTDLETHL 343
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ N+V D + T + +GI +LE I + + + N R L
Sbjct: 344 --DINEVKAMIGDTPLIQTSMLKQEGIDELEIQIRDLFFGGDVQNQDMTYVSNSRHISLL 401
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++++ + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 402 KQARQSIQDAIDAAESGIPMDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459
>gi|55822936|ref|YP_141377.1| tRNA modification GTPase TrmE [Streptococcus thermophilus CNRZ1066]
gi|116627781|ref|YP_820400.1| tRNA modification GTPase TrmE [Streptococcus thermophilus LMD-9]
gi|386086625|ref|YP_006002499.1| tRNA modification GTPase mnmE [Streptococcus thermophilus ND03]
gi|387909718|ref|YP_006340024.1| trNA modification GTPase TrmE [Streptococcus thermophilus
MN-ZLW-002]
gi|81559421|sp|Q5LZW3.1|MNME_STRT1 RecName: Full=tRNA modification GTPase MnmE
gi|122267622|sp|Q03KR8.1|MNME_STRTD RecName: Full=tRNA modification GTPase MnmE
gi|55738921|gb|AAV62562.1| thiophene and furan oxidation protein [Streptococcus thermophilus
CNRZ1066]
gi|116101058|gb|ABJ66204.1| tRNA modification GTPase trmE [Streptococcus thermophilus LMD-9]
gi|312278338|gb|ADQ62995.1| tRNA modification GTPase mnmE [Streptococcus thermophilus ND03]
gi|387574653|gb|AFJ83359.1| tRNA modification GTPase TrmE [Streptococcus thermophilus
MN-ZLW-002]
Length = 456
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 177/479 (36%), Positives = 275/479 (57%), Gaps = 35/479 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+ I +VFK G SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTDAIAIANKVFK----------GKNLETVDSHTIN 54
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ + ++DEV+ M AP+++TREDVVE+ HG +L+ + +GA +A+P
Sbjct: 55 YGHIVE-NNEIIDEVMVSVMRAPKTFTREDVVEINTHGGVAVTNEILQLLIRSGARMAEP 113
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A++ + G +L+ + R + + L
Sbjct: 114 GEFTKRAFLNGRIDLTQAEAVMDLIRAKTDKAMTVAVSQLDGSLKNLINNTRQEILNTLA 173
Query: 272 EIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + NLV +K +EN L TA K+L+ GL AI+GRPNV
Sbjct: 174 QVEVNIDYPEYDDVEEVTTNLVREKTQEFQALLENLLATAKRGKILREGLSTAIIGRPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIR+TDD+VEKIGVE
Sbjct: 234 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVE 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL+ Q++ + I+++NK D +
Sbjct: 294 RSKKALEEADLVLLVLNSSEPLTDQDRTLLDISQNSNR--------IILLNKTDLPQAIQ 345
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCEQ 505
E D + + + I +E I ++ GL + A + N R
Sbjct: 346 TEELP-----EDLIPISVLKNENIDKIEDRINQLFFDNAGLVEKDA---TYLSNARHISL 397
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 IEKALESLEAVNQGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 456
>gi|153956503|ref|YP_001397268.1| tRNA modification GTPase TrmE [Clostridium kluyveri DSM 555]
gi|189036197|sp|A5N451.1|MNME_CLOK5 RecName: Full=tRNA modification GTPase MnmE
gi|146349361|gb|EDK35897.1| TrmE [Clostridium kluyveri DSM 555]
Length = 459
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 168/476 (35%), Positives = 284/476 (59%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G G + I+R+SG ++ I +F+ K +P S +
Sbjct: 4 FDTITAIATVLG--EGGISIIRISGENSLSIANSIFRG-----KNHRDLLDIKPYS--MR 54
Query: 152 YGVVLDRH-GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++++ G ++DEVL M P+SYT ED+VE+ CHG + R+V+ ++AGA LA+
Sbjct: 55 YGFIIEKDTGEILDEVLVSFMKGPKSYTAEDIVEINCHGGVLATRKVMEEVIKAGARLAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I AKS + +A+ QG S + +R + +E++
Sbjct: 115 PGEFTKRAFLNGRIDLSQAEAVIDIIRAKSHISVKSAVQQSQGKISKEINLLREELLEII 174
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IEA +++ ++++ + + + KI+ + ++ L A K+++ GL + IVG+PNV
Sbjct: 175 AHIEATVNYPEEDLEEMTSDQIYLKINKILDEINYILSNAEEGKIVREGLSVVIVGKPNV 234
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN+ + +AIVT+I GTTRDVIE + + G+P+ ++DTAGIR+TDDIVEKIGVE
Sbjct: 235 GKSSLLNSLIEENKAIVTDIPGTTRDVIEEYMNIGGIPIKIVDTAGIRKTDDIVEKIGVE 294
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S+ +D++I+ + + ED E++N + K I+++NK D
Sbjct: 295 KSKEKIDESDLVILMLDSSKELDEEDKEIINYVNHRK--------YIILLNKTDIGDKI- 345
Query: 450 NEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ N + N + + ++ G+G+ ++ I ++ +I + + N R E L+R
Sbjct: 346 -DLNDICNLNSRFIIKTSIKNGEGLDKIKNCIKELFFKGEIKSED-LFITNTRHKEGLIR 403
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
KE+ + +++ L +D +ID+++A + LG+I+G+ + E+++ IF +FC+GK
Sbjct: 404 AKESCIEALQTLKSTLSIDLVSIDIKNAWINLGKITGDTLEEDIIDKIFSQFCLGK 459
>gi|366051957|ref|ZP_09449679.1| tRNA modification GTPase TrmE [Lactobacillus suebicus KCTC 3549]
Length = 462
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 178/477 (37%), Positives = 267/477 (55%), Gaps = 24/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G G + IVR+SG A+ + ++ G + +H +
Sbjct: 6 FDTIAAISTPVG--EGGISIVRISGEGALAVASEIYH----------GKDLNKVATHTIN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N VDEV+ M AP++YT EDV+E+ CHG V R+L+ L GA LA+
Sbjct: 54 YGHIIDPETNNEVDEVMVSVMRAPKTYTLEDVIEINCHGGLVATNRILQLALSYGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ + AL + G S L+ S+R +++L
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRSMKVALNQLDGDLSRLIKSLRQDILDVL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D + + L+ +K + ++ L+TA K+L+ GL AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDAVEEMTTKLLKEKSAELKTQIDALLKTAKQGKVLRDGLATAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN ++AIVT IAGTTRDVIE V V GVP+ L+DTAGIR+T+D +E+IGV
Sbjct: 234 VGKSSLLNNLLHEDKAIVTNIAGTTRDVIEEYVNVNGVPLKLIDTAGIRKTNDQIEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD++++ + + T ED ELL + +++ I+++NK D
Sbjct: 294 ERSHQAIETADLVLLLLDNSEALTQEDQELLGETEDSQR--------IILLNKTDLPAQL 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCEQLM 507
+ + S ++ + T V G+ L I + I + V N R L
Sbjct: 346 DRDQLRQFVSDDEIIETSIVHNDGMDQLADKINHLFFEEGIESNQNNVMVTNARHIALLH 405
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ +AL +++ I +P+D ID+ LG+I+G+ +E+L +F +FC+GK
Sbjct: 406 QASDALKDVQTGIAAGMPVDLVQIDMTRCWDLLGEITGDSYQDELLDQLFSQFCLGK 462
>gi|390562156|ref|ZP_10244401.1| tRNA modification GTPase [Nitrolancetus hollandicus Lb]
gi|390173279|emb|CCF83702.1| tRNA modification GTPase [Nitrolancetus hollandicus Lb]
Length = 507
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 184/474 (38%), Positives = 278/474 (58%), Gaps = 16/474 (3%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T +G G +G++R+SG + +I R+F+ + K+ + + R SH + YG
Sbjct: 47 TIAAIATPVGD--GGIGVIRISGDRSPEIASRLFQ--RGKRFRPVDVRALR--SHHLYYG 100
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D VVDEVL M APRSYT E+VVE+ CHG LR +LR L GA A+PG
Sbjct: 101 HIVDPSTARVVDEVLLARMGAPRSYTSEEVVEISCHGGPAALREILRLILSHGARQAEPG 160
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFTLRAFLNGR+DLSQAE V ++SA++ + A+ ++G + + R IE L
Sbjct: 161 EFTLRAFLNGRIDLSQAEAVMAVVSARTSESLHLAVEELRGRLTGRLGPARDALIEALAF 220
Query: 273 IEARLDF-DDEMPPLNLNLVMDK-IHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
++A DF +DE+PP++L + + I A+ E + + L + G+QIAIVGRPNVG
Sbjct: 221 LDASADFPEDEIPPMDLTTTLGQAITAL----ERVVSASRIGVLYREGIQIAIVGRPNVG 276
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLN ++ERAIVT+IAGTTRDVI ++ + G+P TL+DTAGI ET D++E+IG++R
Sbjct: 277 KSSLLNTLLRTERAIVTDIAGTTRDVITETINLRGIPATLVDTAGIAETADVIERIGIDR 336
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S A +I+ + T +D + + ++ + + + +I+V NK D ++
Sbjct: 337 SRRAVDTAGMILFVLDGSQPVTDDDRRVADLLEPCAR--DDAGRIIIVFNKRDLPAKQTH 394
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+ + + V VT GI LE + + + + V RQ + L R
Sbjct: 395 QEIRERLPGSPVVEISTVTRAGIDRLEDVLYACL-IARAGEAAEPAMVTMRQQQALRRAL 453
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
E+ ++ E +PLD +D+R+A A+G+++GE +SE VL+ IF +FCIGK
Sbjct: 454 ESTQAALRALGEAVPLDLVAVDVREALDAIGEVTGERVSESVLNEIFSRFCIGK 507
>gi|23100946|ref|NP_694413.1| tRNA modification GTPase TrmE [Oceanobacillus iheyensis HTE831]
gi|32171820|sp|Q8CX54.1|MNME_OCEIH RecName: Full=tRNA modification GTPase MnmE
gi|22779181|dbj|BAC15447.1| tRNA modification GTPase [Oceanobacillus iheyensis HTE831]
Length = 459
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 179/477 (37%), Positives = 268/477 (56%), Gaps = 27/477 (5%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
TI AI T +G GA+ IVRLSG A+ I ++F+ G SH ++Y
Sbjct: 5 DTITAISTPVG--EGAIAIVRLSGSEAITITSQIFE----------GKNLQEVPSHTIQY 52
Query: 153 GVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
G ++D N V +EV+ M P+++TREDVVE+ CHG V + RVL L G LA+P
Sbjct: 53 GKIIDPGTNEVAEEVMVSIMRGPKTFTREDVVEINCHGGMVAVNRVLEIVLAKGVRLAEP 112
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFL+GR+DLSQAE V LI AK+ A AL + G S L+ +R + +E +
Sbjct: 113 GEFTKRAFLHGRIDLSQAEAVMDLIRAKTDKAMSVALKQMDGRLSKLIQKLRQELLETVA 172
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+E +D+ D++ ++ ++ +K + +++ L+ A K+L+ GL AI+GRPNV
Sbjct: 173 HVEVNIDYPEYDDVEEMSHAMMKEKSKEVRDELDKLLQIAQQGKILREGLSTAIIGRPNV 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSL+N + +AIVTEI GTTRD+IE V V GVP+ L+DTAGIRET+DIVE+IGV+
Sbjct: 233 GKSSLMNTLVQENKAIVTEIPGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVD 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS V +D+I+ ++ + + +D +L + I++INK D
Sbjct: 293 RSRQVLKESDLILFVLNYNEPLSEDDKKLFEAV--------DGLEYIVIINKTDLEQQL- 343
Query: 450 NEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ ++V D V T + QG+ +LE AI I G + N R + L
Sbjct: 344 -DLDEVREFAKDRPVVTTALLEEQGVDELEKAIADTFFTGDIDTGDMTYVSNVRHIQLLK 402
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K+AL IE +P+D ID+ + +G+I G+ S+ ++ +F +FC+GK
Sbjct: 403 QAKQALEDAMEGIELGMPMDIVQIDVTRSWEFMGEIIGDTASDSLIDQLFSQFCLGK 459
>gi|407478664|ref|YP_006792541.1| tRNA modification GTPase MnmE [Exiguobacterium antarcticum B7]
gi|407062743|gb|AFS71933.1| tRNA modification GTPase MnmE [Exiguobacterium antarcticum B7]
Length = 460
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 188/476 (39%), Positives = 263/476 (55%), Gaps = 22/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSGP AV RV++ + PT H +
Sbjct: 4 FDTIAAISTPMG--EGAIAIVRLSGPQAVATADRVYRGANRLNDV--------PT-HTIH 52
Query: 152 YGVVLDRHG-NVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEA-GATLA 209
YG ++++ VVDEV+ M AP+++TREDVVEL CHG V + RVL LE LA
Sbjct: 53 YGKLVEQTTEQVVDEVMVSVMRAPKTFTREDVVELNCHGGIVAVNRVLELILEQPDVRLA 112
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V LI AK+ A A+ I+G S LV +R + ++
Sbjct: 113 EPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMTVAVGQIEGRLSKLVQDLREQLLQT 172
Query: 270 LTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+ IE +D+ + + + +V + Q + L TA K+L+ GL AI+GRPN
Sbjct: 173 IASIEVNIDYPEYDAEEMTQQIVQTNAGEVRQILTELLATARQGKILREGLSTAIIGRPN 232
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + +AIVT+IAGTTRD IE V V GVP+ L+DTAGIRET+DIVE++GV
Sbjct: 233 VGKSSLLNTLVQEAKAIVTDIAGTTRDTIEEYVNVRGVPLKLIDTAGIRETEDIVERMGV 292
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
E+S AD+I++ ++ D T ED L I+ I+++NK D
Sbjct: 293 EKSRQALNSADLILLVLNGNDELTEEDVLLFEAIRGMNA--------IIIVNKSDLPQQI 344
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E K V T + G+ DLE AI + + + N R + + +
Sbjct: 345 DLERVKQLADDRPIVTTSLLEEAGVMDLEAAIAALFFEQGVEGQDMTYVSNARHIQLIKQ 404
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + + E +P+D IDLR A LG+I+G+ + +L +F +FC+GK
Sbjct: 405 ASQMIEDALGAAEASMPIDMVQIDLRRAWDTLGEINGDTAQDSLLDKLFSQFCLGK 460
>gi|293380887|ref|ZP_06626923.1| tRNA modification GTPase TrmE [Lactobacillus crispatus 214-1]
gi|290922560|gb|EFD99526.1| tRNA modification GTPase TrmE [Lactobacillus crispatus 214-1]
Length = 461
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 175/476 (36%), Positives = 271/476 (56%), Gaps = 25/476 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T IG G + IVR+SG A+ I VFK G + +H +
Sbjct: 8 FDTIAAISTPIG--EGGISIVRMSGEDAIKIADEVFK----------GEDLSKVPTHTIH 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G +DE + + AP+++TRED+VE+ CHG V +L+ L GA +A
Sbjct: 56 YGHIIDPDTGKTIDEAMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQLLLSHGARMAD 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V ++ AK+ A A+ + GG + ++R + + L
Sbjct: 116 PGEFTKRAFVNGRIDLTQAESVMDIVRAKTDKARQVAIGQLAGGLLHKIQAMRQEILNTL 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+E +D+ + + + + D ++ + L+TA K+L++GL AIVGRPNV
Sbjct: 176 ANVEVNIDYPEYDADTVTAKQMADTSKSVIDKINRLLKTAQEGKILRNGLATAIVGRPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ++S++AIVT++AGTTRD +E V+V GVP+ L+DTAGI T+D VEKIGVE
Sbjct: 236 GKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTEDKVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS-A 448
RS+ AD++++ + A T+ED L+ + K+ I+++NK D
Sbjct: 296 RSKKALERADLVLLLIDASQALTAEDQALIEATKDKKR--------IVILNKSDLGQKIT 347
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ E K+ S D + T + Q + LE I K+ + + NQRQ L +
Sbjct: 348 TTEMEKLTGS--DVISTSILKEQNLDALEELINKLFFAGIENSNDQIMVTNQRQASLLHK 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+ L + ++E+ +P+D ID A LG+I+GE +E+++ +F +FC+GK
Sbjct: 406 AKKELEDVIQAVEDGVPVDIAQIDFTGAWDTLGEITGESAPDELITQLFSQFCLGK 461
>gi|125625274|ref|YP_001033757.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. cremoris
MG1363]
gi|389855662|ref|YP_006357906.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. cremoris
NZ9000]
gi|205415771|sp|A2RP37.1|MNME_LACLM RecName: Full=tRNA modification GTPase MnmE
gi|124494082|emb|CAL99083.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. cremoris
MG1363]
gi|300072084|gb|ADJ61484.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 455
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 178/475 (37%), Positives = 273/475 (57%), Gaps = 28/475 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG A+ I V+K G + SH +
Sbjct: 7 FDTIAAISTPLG--EGAIAIVRLSGTDALKIAQSVYK----------GKNLAQVASHTIN 54
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG + + +VDEV+ M AP+++TRED+VE+ HG + +L+ L GA LA+P
Sbjct: 55 YGHIFEEE-RLVDEVMVSVMRAPKTFTREDIVEINTHGGIAVTQEILQLLLRNGARLAEP 113
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE+V LI AK+ AA+ A+ + G S ++ ++R + +E L
Sbjct: 114 GEFTKRAFLNGRIDLAQAESVMDLIRAKTDKAANIAVKQLDGSLSKMINNIRQEILESLA 173
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + ++++K Q +EN L TA K+L+ GL+ AI+GRPNV
Sbjct: 174 QVEVNIDYPEYDDVETMTSQMLLEKTAHFEQLLENLLSTAKRGKILREGLKTAIIGRPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+IAGTTRDVI + GVP+ L+DTAGIRETDD+VE IG+E
Sbjct: 234 GKSSLLNQLLREEKAIVTDIAGTTRDVITEFANIGGVPLELVDTAGIRETDDLVEAIGIE 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ + A T +D ELL ++ + I+++NK D
Sbjct: 294 RSKKALAEADLVLLVLDASLELTDKDLELLELSKNANR--------IVLLNKTDLPEKL- 344
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+ N++ F + A+ + + +E I +I +I A N R +
Sbjct: 345 -DINQISGDF---IRISALKNENLSAVEEKINQIFFAGEIEAKDATVLSNARHISLVEEA 400
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+AL + + LP+D +D+ LG+I+GE +E+++ +F +FC+GK
Sbjct: 401 LKALKEANNGLALGLPVDLIQVDVTRCWQLLGEITGEAAPDELITQLFSQFCLGK 455
>gi|347534966|ref|YP_004841636.1| tRNA modification GTPase mnmE [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345505022|gb|AEN99704.1| tRNA modification GTPase mnmE [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 465
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 183/481 (38%), Positives = 275/481 (57%), Gaps = 31/481 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
+ TIAAI T+ G G + IVR+SG A+ I ++++ G + + +
Sbjct: 8 YDTIAAISTAPG--VGGISIVRISGSDAMKIAKKIYR----------GKDLDKVATDTIN 55
Query: 152 YGVVLD--RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG ++D + VDEV+ M AP++YT+ED++E+ CHG +VL+ L GA +A
Sbjct: 56 YGHIVDPANDDSRVDEVMVSVMRAPKTYTKEDIIEINCHGGIQVTNKVLQLVLRNGARMA 115
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQ+E V LI AK+ A AAL + G S+ + +R K +++
Sbjct: 116 EPGEFTKRAFLNGRIDLSQSEAVMDLIDAKTDEARKAALNQLDGNLSAAIRKMRQKIVDV 175
Query: 270 LTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L +E +D+ D + L++DK + ++E L TA K+L+ GL AIVGRP
Sbjct: 176 LANVEVNIDYPEYDGAEVVTSKLMLDKAQEIKAEIEKLLATAQQGKVLRDGLNTAIVGRP 235
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN E+AIVT++ GTTRDV++ V V GVP+ L+DTAGIRET+D VEKIG
Sbjct: 236 NVGKSSLLNRLLHEEKAIVTDVPGTTRDVLDEYVNVAGVPLHLIDTAGIRETEDKVEKIG 295
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKS---TESSTPMILVINKIDC 444
V+RS A AD++++ +++ + T ED +LL+ + +K+ ++ PM L I KI
Sbjct: 296 VDRSRAAIKKADLVLLVLNSSEPLTDEDRQLLDLTRDSKRVILLNKTDLPMKLDIEKIKA 355
Query: 445 APSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQC 503
+ GNS D + T A+ G + LE I ++ I + V N R
Sbjct: 356 ---------EYGNS--DMIKTSAMAENGTKTLEDTISQMFFTKGIASTQNSVMVTNARHI 404
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
L + +++ + I LP+D IDL+ A LG I+G+ +E++ +F +FCIG
Sbjct: 405 SLLQQALDSVQTVIDGIGAGLPVDIVQIDLQSAWDDLGAITGDSYDDELMDQLFDQFCIG 464
Query: 564 K 564
K
Sbjct: 465 K 465
>gi|402835677|ref|ZP_10884240.1| tRNA modification GTPase TrmE [Mogibacterium sp. CM50]
gi|402273959|gb|EJU23149.1| tRNA modification GTPase TrmE [Mogibacterium sp. CM50]
Length = 459
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 182/477 (38%), Positives = 279/477 (58%), Gaps = 27/477 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
T AAI T +G G VGIVR+SGP +++I+ VFK K + V YG
Sbjct: 4 TFAAIATPLG--EGGVGIVRVSGPGSLNIMKVVFKECPDKVEPRH-----------VYYG 50
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
LD GNV+DE++ + M AP ++T EDVVE Q HGS V LR ++ + + AGA +A PGE
Sbjct: 51 HALDASGNVIDEMICIYMRAPHTFTGEDVVEFQAHGSNVSLRLIVMSAISAGARIADPGE 110
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT AFLNG+LDLSQAE V LI A+S A + G + ++R ++L ++
Sbjct: 111 FTKLAFLNGKLDLSQAEAVIDLIKARSEKPLSIASDQLNGSLGQEIVAIRNNIKDVLAQM 170
Query: 274 EARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
+DF D+++ ++ + + ++ + +++ ++++ + K+ + G++IA+VGR NVGKS
Sbjct: 171 AVNIDFPDEDIEQVSCDEFITELKRQNDRLQSLIKSSEFGKIAREGIKIALVGRTNVGKS 230
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLN RAIVT+I GTTRD IE S ++ G P+ ++DTAGIR+TDD++E+IG+ERS+
Sbjct: 231 SLLNGLLGENRAIVTDIPGTTRDTIEESSSIGGYPIVVVDTAGIRDTDDVIEQIGIERSK 290
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS-NE 451
AD+++M +ED E+ + +NKK ++LVINK D +A+ ++
Sbjct: 291 NEIEEADLVVMVADGSTELAAEDFEIAEHV-ANKK-------VMLVINKEDLGMTAAQSD 342
Query: 452 WNK----VGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+K +G D V+T T +GI + AI + + I + G N+R + L+
Sbjct: 343 IDKLKSIIGCDTGDIVYTSVKTVKGIGKVRDAIERNLARGFIKSDGGNIVTNERHKDALV 402
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
R K ALV +E PL+ I++ D+ LG+I GE SEE+L +F KFC+GK
Sbjct: 403 RAKAALVHGIELLEMREPLEVAEIEVHDSFQILGEIIGETASEEILDTVFSKFCLGK 459
>gi|295693883|ref|YP_003602493.1| tRNA modification GTPase mnme [Lactobacillus crispatus ST1]
gi|295031989|emb|CBL51468.1| tRNA modification GTPase mnmE [Lactobacillus crispatus ST1]
Length = 461
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 175/476 (36%), Positives = 271/476 (56%), Gaps = 25/476 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T IG G + IVR+SG A+ I VFK G + +H +
Sbjct: 8 FDTIAAISTPIG--EGGISIVRMSGEDAIKIADEVFK----------GEDLSKVPTHTIH 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G +DE + + AP+++TRED+VE+ CHG V +L+ L GA +A
Sbjct: 56 YGHIIDPDTGKTIDEAMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQLLLSHGARMAD 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V ++ AK+ A A+ + GG + ++R + + L
Sbjct: 116 PGEFTKRAFVNGRIDLTQAESVMDIVRAKTDKARQVAIGQLAGGLLHKIQAMRQEILNTL 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+E +D+ + + + + D ++ + L+TA K+L++GL AIVGRPNV
Sbjct: 176 ANVEVNIDYPEYDADTVTAKQMADTSRSVIDKINRLLKTAQEGKILRNGLATAIVGRPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ++S++AIVT++AGTTRD +E V+V GVP+ L+DTAGI T+D VEKIGVE
Sbjct: 236 GKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTEDKVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS-A 448
RS+ AD++++ + A T+ED L+ + K+ I+++NK D
Sbjct: 296 RSKKALERADLVLLLIDASQALTAEDQALIEATKDKKR--------IVILNKSDLGQKIT 347
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ E K+ S D + T + Q + LE I K+ + + NQRQ L +
Sbjct: 348 TTEMEKLTGS--DVISTSILKEQNLDALEELINKLFFAGIENSNDQIMVTNQRQASLLHK 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+ L + ++E+ +P+D ID A LG+I+GE +E+++ +F +FC+GK
Sbjct: 406 AKKELEDVIQAVEDGVPVDIAQIDFTGAWDTLGEITGESAPDELITQLFSQFCLGK 461
>gi|375086755|ref|ZP_09733153.1| tRNA modification GTPase TrmE [Megamonas funiformis YIT 11815]
gi|374564294|gb|EHR35593.1| tRNA modification GTPase TrmE [Megamonas funiformis YIT 11815]
Length = 465
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 162/419 (38%), Positives = 251/419 (59%), Gaps = 8/419 (1%)
Query: 147 SHVVEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGA 206
SH V YG ++D GNV+DE L + M AP SYT+E+VVE+Q HG + +RR+L L+ GA
Sbjct: 54 SHKVVYGKIVDEKGNVIDEALCIAMWAPNSYTKENVVEIQSHGGALVVRRILELALQNGA 113
Query: 207 TLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKC 266
+A+PGEFT RAFLNGRLDLSQA++V +I A++ A+ A +QG FS + ++R
Sbjct: 114 RMAEPGEFTKRAFLNGRLDLSQAQSVMDIIKARTDASLRMAAGHLQGKFSDEIKAMRHDI 173
Query: 267 IELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVG 325
+E++ +EA +DF +D++ + + K+ ++ +E L T N ++L+ GL AI+G
Sbjct: 174 LEVIAHLEASIDFPEDDIEDVAKDEASAKVRSIKNRIEEMLSTFNTGRILRDGLVTAIIG 233
Query: 326 RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEK 385
+PNVGKSSLLN + +RAIVT+I GTTRD +E + GVP+ ++DTAGIRET+D VE+
Sbjct: 234 KPNVGKSSLLNTLLREDRAIVTDIPGTTRDSLEEYANIGGVPLKIIDTAGIRETEDKVEQ 293
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445
IGVE+S + AD+I+ T ED E++N +Q + ++L N + C
Sbjct: 294 IGVEKSMSYVQKADLILALFDTSSDLTKEDEEIINLLQGKE------GIVLLTKNDLSCV 347
Query: 446 PSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+ ++ +F ++ GI++LE I+ V + + N RQ
Sbjct: 348 LDIEDLQKRLQGNFK-YMQISTFNNDGIKELEQEIVNRVYSGTVKQAEGVFVNNVRQANA 406
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L ++ L ++IE ++ DF ID+R A LG+I+G+ + E+++ IF +FCIGK
Sbjct: 407 LKEAQKYLEDCLNTIEMDMAEDFIVIDIRSAWEKLGEITGDTVDEDIIDQIFSQFCIGK 465
>gi|377832532|ref|ZP_09815490.1| tRNA modification GTP-binding protein TrmE [Lactobacillus mucosae
LM1]
gi|377553724|gb|EHT15445.1| tRNA modification GTP-binding protein TrmE [Lactobacillus mucosae
LM1]
Length = 463
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 184/479 (38%), Positives = 274/479 (57%), Gaps = 27/479 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G G + I+R+SG AV + +++ K K ++ + +
Sbjct: 6 FDTIAAISTPVG--EGGISIIRISGEEAVAVAKKLYHGSKDLAKVATNT---------IN 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G VDEV+ M AP +YTREDVVE+ CHG + R+L+ L GA LA+
Sbjct: 55 YGHIIDPDSGAEVDEVMVSIMRAPHTYTREDVVEINCHGGLLATNRILQLTLSHGARLAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGRLDLSQ+E V LI AK+ + AL + G S L+ ++R +++L
Sbjct: 115 PGEFTKRAFLNGRLDLSQSEAVMDLIRAKTDKSMKVALNQLDGDLSRLIKALRKDILDVL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D + + ++ +K + Q ++ L+TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDAVEEMTTKMLKEKAQEVQQRIQALLKTAKQGKVLRDGLATAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN ++AIVT +AGTTRDVIE V V GVP+ L+DTAGIR T+D VEKIGV
Sbjct: 235 VGKSSLLNTLLHEDKAIVTNVAGTTRDVIEEYVNVEGVPLKLIDTAGIRHTEDTVEKIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD++++ + + + T ED EL+ ++ + K P I+++NK D
Sbjct: 295 ERSRQAIDTADLVLLLIDSSNALTDEDRELI-KLTAGK-------PRIVILNKTDLPNRI 346
Query: 449 S-NEWNKVGNSFNDHVF-TCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCEQ 505
NE ++ + D V T V +G+++L I + I + V N R
Sbjct: 347 DLNELRQL--TAGDRVIKTSIVEHEGMEELGRTISHMFFDEGIESSQNTVMVTNARHIGL 404
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + +AL + S I +P+D ID+ LG+I+G+ +E+L +F +FC+GK
Sbjct: 405 LHQANDALNDVLSGIAAGMPVDLVQIDMTRCWELLGEITGDSYQDELLDQLFSQFCLGK 463
>gi|55821017|ref|YP_139459.1| tRNA modification GTPase TrmE [Streptococcus thermophilus LMG
18311]
gi|81560616|sp|Q5M4H3.1|MNME_STRT2 RecName: Full=tRNA modification GTPase MnmE
gi|55737002|gb|AAV60644.1| thiophene and furan oxidation protein [Streptococcus thermophilus
LMG 18311]
Length = 456
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 177/479 (36%), Positives = 275/479 (57%), Gaps = 35/479 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+ I +VFK G SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTDAIAIANKVFK----------GKNLETVDSHTIN 54
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ + ++DEV+ M AP+++TREDVVE+ HG +L+ + +GA +A+P
Sbjct: 55 YGHIVE-NNEIIDEVMVSVMRAPKTFTREDVVEVNTHGGVAVTNEILQLLIRSGARMAEP 113
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A++ + G +L+ + R + + L
Sbjct: 114 GEFTKRAFLNGRIDLTQAEAVMDLIRAKTDKAMTVAVSQLDGSLKNLINNTRQEILNTLA 173
Query: 272 EIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + NLV +K +EN L TA K+L+ GL AI+GRPNV
Sbjct: 174 QVEVNIDYPEYDDVEEVTTNLVREKTQEFQALLENLLATAKRGKILREGLSTAIIGRPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIR+TDD+VEKIGVE
Sbjct: 234 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVE 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL+ Q++ + I+++NK D +
Sbjct: 294 RSKKALEEADLVLLVLNSSEPLTDQDRTLLDISQNSNR--------IILLNKTDLPQAIQ 345
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCEQ 505
E D + + + I +E I ++ GL + A + N R
Sbjct: 346 TEELP-----EDLIPISVLKNENIDKIEDRINQLFFDNAGLVEKDA---TYLSNARHISL 397
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 IEKALESLEAVNQGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 456
>gi|227878343|ref|ZP_03996300.1| tRNA modification GTP-binding protein TrmE [Lactobacillus crispatus
JV-V01]
gi|256843835|ref|ZP_05549322.1| tRNA modification GTPase TrmE [Lactobacillus crispatus 125-2-CHN]
gi|256849610|ref|ZP_05555042.1| thiophene and furan oxidation protein [Lactobacillus crispatus
MV-1A-US]
gi|262046278|ref|ZP_06019241.1| tRNA modification GTPase TrmE [Lactobacillus crispatus MV-3A-US]
gi|312984011|ref|ZP_07791359.1| tRNA modification GTPase TrmE [Lactobacillus crispatus CTV-05]
gi|423322324|ref|ZP_17300194.1| tRNA modification GTPase mnmE [Lactobacillus crispatus FB077-07]
gi|227862079|gb|EEJ69641.1| tRNA modification GTP-binding protein TrmE [Lactobacillus crispatus
JV-V01]
gi|256613740|gb|EEU18942.1| tRNA modification GTPase TrmE [Lactobacillus crispatus 125-2-CHN]
gi|256713726|gb|EEU28715.1| thiophene and furan oxidation protein [Lactobacillus crispatus
MV-1A-US]
gi|260573608|gb|EEX30165.1| tRNA modification GTPase TrmE [Lactobacillus crispatus MV-3A-US]
gi|310894513|gb|EFQ43587.1| tRNA modification GTPase TrmE [Lactobacillus crispatus CTV-05]
gi|405589176|gb|EKB62754.1| tRNA modification GTPase mnmE [Lactobacillus crispatus FB077-07]
Length = 461
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 175/476 (36%), Positives = 271/476 (56%), Gaps = 25/476 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T IG G + IVR+SG A+ I VFK G + +H +
Sbjct: 8 FDTIAAISTPIG--EGGISIVRMSGEDAIKIADEVFK----------GEDLSKVPTHTIH 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G +DE + + AP+++TRED+VE+ CHG V +L+ L GA +A
Sbjct: 56 YGHIIDPDTGKTIDEAMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQLLLSHGARMAD 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V ++ AK+ A A+ + GG + ++R + + L
Sbjct: 116 PGEFTKRAFVNGRIDLTQAESVMDIVRAKTDKARQVAVGQLAGGLLHKIQAMRQEILNTL 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+E +D+ + + + + D ++ + L+TA K+L++GL AIVGRPNV
Sbjct: 176 ANVEVNIDYPEYDADTVTAKQMADTSRSVIDKINRLLKTAQEGKILRNGLATAIVGRPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ++S++AIVT++AGTTRD +E V+V GVP+ L+DTAGI T+D VEKIGVE
Sbjct: 236 GKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTEDKVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS-A 448
RS+ AD++++ + A T+ED L+ + K+ I+++NK D
Sbjct: 296 RSKKALERADLVLLLIDASQALTAEDQALIEATKDKKR--------IVILNKSDLGQKIT 347
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ E K+ S D + T + Q + LE I K+ + + NQRQ L +
Sbjct: 348 TTEMEKLTGS--DVISTSILKEQNLDALEELINKLFFAGIENSNDQIMVTNQRQASLLHK 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+ L + ++E+ +P+D ID A LG+I+GE +E+++ +F +FC+GK
Sbjct: 406 AKKELEDVIQAVEDGVPVDIAQIDFTGAWDTLGEITGESAPDELITQLFSQFCLGK 461
>gi|150019907|ref|YP_001312161.1| tRNA modification GTPase TrmE [Clostridium beijerinckii NCIMB 8052]
gi|189036196|sp|A6M3M5.1|MNME_CLOB8 RecName: Full=tRNA modification GTPase MnmE
gi|149906372|gb|ABR37205.1| tRNA modification GTPase TrmE [Clostridium beijerinckii NCIMB 8052]
Length = 462
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 182/479 (37%), Positives = 280/479 (58%), Gaps = 26/479 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T IG G V I+R+SG + I ++F P K +S ++ ++
Sbjct: 4 FDTICAIATPIG--EGGVSIIRISGENVLKIASKIFTPRNKYDIES-------MKTYTMK 54
Query: 152 YGVVLDRHGN--VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG ++D ++DEV+ M APRSYT E+VVE+ CHG + VL ++AGA LA
Sbjct: 55 YGNIVDLENKKEIIDEVILSYMKAPRSYTGENVVEINCHGGVISTNSVLDQVIKAGARLA 114
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V +I+AK+ + AA+ +G S + +R + +
Sbjct: 115 EPGEFTKRAFLNGRIDLSQAEAVMDIITAKTELSMKAAMIQSKGALSKEINELRGYLLNV 174
Query: 270 LTEIEARLDF-DDEMPPLNLNLVM---DKIHAMSQDVENALETANYDKLLQSGLQIAIVG 325
L IE +DF +D+ ++ NL++ D I + +E L A+ K+++ GL I IVG
Sbjct: 175 LALIEYAVDFTEDDEDIVDDNLILQIKDGIENTNSKIETLLSNADAGKIVRDGLNIVIVG 234
Query: 326 RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEK 385
+PNVGKSSLLNA + RAIVT++ GTTRD+IE + + G+PV + DTAGIR+T+D+VEK
Sbjct: 235 KPNVGKSSLLNALLRENRAIVTDVPGTTRDIIEEYINLDGIPVKITDTAGIRDTEDVVEK 294
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445
IGVE+S+ AD+II+ + A EDS ++N+I++ K I+++NK+D
Sbjct: 295 IGVEKSKEKIEEADLIILMLDASRYIDEEDSRIINKIKNRK--------YIVLLNKMDLK 346
Query: 446 PSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
E ++ + ++ + A TGQGI L+ + K+ +I + + N R +
Sbjct: 347 DIKIQE--EILKNLSNIINISAKTGQGIDILKDEVKKLFFNGEISSESLIIS-NARHKQA 403
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L ++ E I LD +I + A ALG+I+G+++ E++L+ IF +FC+GK
Sbjct: 404 LYKSLENCKMALDKINANEYLDLISIYITAAMKALGEITGDELEEDLLNKIFSEFCVGK 462
>gi|116513181|ref|YP_812088.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. cremoris
SK11]
gi|414075238|ref|YP_007000455.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. cremoris
UC509.9]
gi|123025076|sp|Q02VP7.1|MNME_LACLS RecName: Full=tRNA modification GTPase MnmE
gi|116108835|gb|ABJ73975.1| tRNA modification GTPase trmE [Lactococcus lactis subsp. cremoris
SK11]
gi|413975158|gb|AFW92622.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. cremoris
UC509.9]
Length = 455
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 179/475 (37%), Positives = 272/475 (57%), Gaps = 28/475 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG A+ I V+K G + SH +
Sbjct: 7 FDTIAAISTPLG--EGAIAIVRLSGTDALKIAQSVYK----------GKNLAQVASHTIN 54
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG + + +VDEV+ M AP+++TRED+VE+ HG + +L+ L GA LA+P
Sbjct: 55 YGHIFEEE-RLVDEVMVSVMRAPKTFTREDIVEINTHGGIAVTQEILQLLLRNGARLAEP 113
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE+V LI AK+ AA+ A+ + G S ++ ++R +E L
Sbjct: 114 GEFTKRAFLNGRIDLAQAESVMDLIRAKTDKAANIAVKQLDGSLSKMINNIRQDILESLA 173
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + ++++K Q +EN L TA K+L+ GL+ AI+GRPNV
Sbjct: 174 QVEVNIDYPEYDDVETMTSQMLLEKTAHFEQLLENLLSTAKRGKILREGLKTAIIGRPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+IAGTTRDVI + GVP+ L+DTAGIRETDD+VE IGVE
Sbjct: 234 GKSSLLNQLLREEKAIVTDIAGTTRDVITEFANIGGVPLELVDTAGIRETDDLVEAIGVE 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ + A T +D ELL ++ + I+++NK D
Sbjct: 294 RSKKALAEADLVLLVLDASLELTDKDLELLELSKNANR--------IVLLNKTDLPEKL- 344
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+ N++ F + A+ + + +E I +I +I A N R +
Sbjct: 345 -DINQISGDF---IRISALKNENLSAVEEKINQIFFAGEIEAKDATVLSNARHISLVEEA 400
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+AL + + LP+D +D+ LG+I+GE +E+++ +F +FC+GK
Sbjct: 401 LKALKEANNGLALGLPVDLIQVDVTRCWQLLGEITGEAAPDELITQLFSQFCLGK 455
>gi|343525637|ref|ZP_08762592.1| tRNA modification GTPase TrmE [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
gi|343395907|gb|EGV08445.1| tRNA modification GTPase TrmE [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
Length = 457
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 175/477 (36%), Positives = 275/477 (57%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTESFAIAQKIFK----------GKDLSKVASHTLN 53
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D H N V+DEV+ M +P+++TREDV+E+ HG +L+ + GA +A
Sbjct: 54 YGHIIDPHSNQVLDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNGILQLAIREGARMAD 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE + +I AK+ A + A+ + G S L+ ++R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAIMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + + L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTKLLYEKTAEFEELLTQLLKTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIR+TDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q T IL++NK D
Sbjct: 294 ERSKKALKDADLVLLVLNANEPLTEQDHKLLEISQ--------DTNRILLLNKTDL---- 341
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
+E + +D + A+ Q I +E I ++ + I + N R +
Sbjct: 342 -DEKIETTQLPDDFIKISALQNQNIDKIEERINQLFFENAGIAEQDATYLSNYRHISLIE 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + ++ +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 401 KAIESLHAVNEGLDLGMPVDLVQVDLTQTWRILGEITGDAAPDELITQLFSQFCLGK 457
>gi|421234003|ref|ZP_15690624.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2061617]
gi|421249313|ref|ZP_15705774.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2082239]
gi|395601759|gb|EJG61905.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2061617]
gi|395614425|gb|EJG74445.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2082239]
Length = 457
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 181/480 (37%), Positives = 277/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + IV ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIVQKIFK----------GKDLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ ++R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 346 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|253573863|ref|ZP_04851205.1| tRNA modification GTPase TrmE [Paenibacillus sp. oral taxon 786
str. D14]
gi|251846340|gb|EES74346.1| tRNA modification GTPase TrmE [Paenibacillus sp. oral taxon 786
str. D14]
Length = 459
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 179/474 (37%), Positives = 278/474 (58%), Gaps = 22/474 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++G + ++R+SGP A+ VGR+F+ S + SH V YG
Sbjct: 5 TIAAISTAVG--ESGIAVIRVSGPEAISEVGRLFR---------SKTALPEAESHTVHYG 53
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEA-GATLAQP 211
++D G ++EVL APRS+T EDVVE+ HG + ++RV+ L+ G LA+P
Sbjct: 54 FIVDPATGEKLEEVLVSVFRAPRSFTTEDVVEISTHGGIISVKRVMDLLLQQRGIRLAEP 113
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DLSQAE V LI +KS A AL ++G S ++ +R IE L
Sbjct: 114 GEFTKRAFLNGRIDLSQAEAVIDLIRSKSDRAFSVALKQVEGQLSRQISKLRHTLIETLA 173
Query: 272 EIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
IE +D+ + ++ + + + +K +S+ ++ L+TAN K+L+ G+ AIVGRPNVG
Sbjct: 174 HIEVNIDYPEHDVESMTMAFIKEKCAEVSEGIDALLKTANQGKILREGITTAIVGRPNVG 233
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSL+NA ++ +AIVT+I GTTRDVIE VT+ +P+ LLDTAGIRET D+VE+IGVER
Sbjct: 234 KSSLMNALARENKAIVTDIPGTTRDVIEEYVTINNIPLKLLDTAGIRETMDVVEQIGVER 293
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S+A AD+I++ +++ + ++ L+ +++ +ST I+++NKID
Sbjct: 294 SKAAVSEADLILLVLNSAEALHEDEIALMEQLKG--RST------IVLLNKIDLPQQLDR 345
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
E + V T +G+ LE AI ++ ++ + + N R L + K
Sbjct: 346 EVVRRYFPEESIVELSVKTEEGLDHLEDAIARMFFGGELESNDLTYVSNVRHIALLKKAK 405
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L + + +P+D ID+R A LG++ G+ + ++ IF +FC+GK
Sbjct: 406 QSLADAYEAADSGIPIDILQIDVRLAWEQLGEVIGDSAPDALIDQIFSQFCLGK 459
>gi|315039281|ref|YP_004032849.1| tRNA modification GTPase TrmE [Lactobacillus amylovorus GRL 1112]
gi|325957755|ref|YP_004293167.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus 30SC]
gi|385818450|ref|YP_005854840.1| tRNA modification GTPase TrmE [Lactobacillus amylovorus GRL1118]
gi|312277414|gb|ADQ60054.1| tRNA modification GTPase TrmE [Lactobacillus amylovorus GRL 1112]
gi|325334320|gb|ADZ08228.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus 30SC]
gi|327184388|gb|AEA32835.1| tRNA modification GTPase TrmE [Lactobacillus amylovorus GRL1118]
Length = 461
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 172/475 (36%), Positives = 275/475 (57%), Gaps = 23/475 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T IG G + IVR+SG AV I VFK G+ + +H +
Sbjct: 8 FDTIAAISTPIG--EGGISIVRMSGEDAVKIANEVFK----------GANLAKVPTHTIH 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G +DE + + AP+++TRED+VE+ CHG V R+L+ L GA +A
Sbjct: 56 YGHIIDPDTGETIDEAMVTVLRAPKTFTREDIVEINCHGGIVVTNRILQLLLSHGARMAD 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V ++ AK+ A A ++GG + ++R + ++ L
Sbjct: 116 PGEFTKRAFVNGRIDLTQAESVMDIVRAKTDKARKVAEKQLEGGLLHKIRAMRQEILDTL 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+E +D+ + + + + D +++ + ++ L TA K+L++GL AIVG+PNV
Sbjct: 176 ANVEVNIDYPEYDADTVTAKQMADTANSVIKKIDRLLSTAQEGKILRNGLATAIVGQPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ++S++AIVT++AGTTRD +E V+V GVP+ L+DTAGI TDD VEKIGVE
Sbjct: 236 GKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTDDKVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ + A T ED L++ + K+ I+++NK D +
Sbjct: 296 RSKKALERADLVLLLIDASQELTDEDKALIDETKDKKR--------IIILNKSDLGQKLT 347
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+ K + ++ + T + + + LE I K+ + + NQRQ L +
Sbjct: 348 VDQMK-QMTGSEVISTSILKEKNLDQLEEVISKLFFSGIENSNDQVMVTNQRQTSLLQKA 406
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+ L + ++ + +P+D ID A LG+I+GE +E+++ +F +FC+GK
Sbjct: 407 KKELQDVVQAVNDGVPVDIAQIDFTGAWDTLGEITGESAPDELITTLFSQFCLGK 461
>gi|289551831|ref|YP_003472735.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus
lugdunensis HKU09-01]
gi|385785379|ref|YP_005761552.1| tRNA modification GTPase [Staphylococcus lugdunensis N920143]
gi|418415565|ref|ZP_12988770.1| tRNA modification GTPase mnmE [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|289181362|gb|ADC88607.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus
lugdunensis HKU09-01]
gi|339895635|emb|CCB54965.1| probable tRNA modification GTPase [Staphylococcus lugdunensis
N920143]
gi|410875021|gb|EKS22951.1| tRNA modification GTPase mnmE [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 459
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 175/481 (36%), Positives = 274/481 (56%), Gaps = 32/481 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT---SH 148
F TI +I T +G GA+GIVRLSGP A++I +++K G ++ SH
Sbjct: 3 FDTITSISTPMG--EGAIGIVRLSGPQAIEIGDKLYK------------GKYKLAEVDSH 48
Query: 149 VVEYGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
+ YG ++D N VV+EV+ + AP+++TRED++E+ CHG + + RVL + GA
Sbjct: 49 TINYGHIVDPETNEVVEEVMISVLRAPKTFTREDIIEINCHGGILTINRVLELTMTHGAR 108
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
+A+PGE++ RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +
Sbjct: 109 MAEPGEYSKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRQSIL 168
Query: 268 ELLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVG 325
E+L ++E +D+ D++ ++++ + +++ LET K+++ GL IVG
Sbjct: 169 EILAQVEVNIDYPEYDDVEDATTEFLLEQSKNIKAEIDKLLETGAQGKIMREGLSTVIVG 228
Query: 326 RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEK 385
+PNVGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIR+T+DIVEK
Sbjct: 229 KPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEK 288
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445
IGVERS AD+I+ ++ + T ED L I++ +I+++NK D
Sbjct: 289 IGVERSRKALSQADLILFVLNYNEPLTKEDRTLFEVIENE--------DVIVIVNKTDLV 340
Query: 446 PSASNE--WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQC 503
+ E +GN + T + +GI +LE I + + + N R
Sbjct: 341 QQLNIEEVQEMIGNK--PLIQTSMLKQEGIDELEIQIRDLFFGGDVQNQDMTYVSNSRHI 398
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
L + + A+ + E +P+D IDL LG+I GE S+E+++ +F +FC+G
Sbjct: 399 ALLKQARHAIQDAIDAAESGVPMDMVQIDLTRTWEILGEIIGESASDELINQLFSQFCLG 458
Query: 564 K 564
K
Sbjct: 459 K 459
>gi|315284189|ref|ZP_07872091.1| tRNA modification GTPase TrmE [Listeria marthii FSL S4-120]
gi|313612167|gb|EFR86407.1| tRNA modification GTPase TrmE [Listeria marthii FSL S4-120]
Length = 425
Score = 299 bits (766), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 170/410 (41%), Positives = 246/410 (60%), Gaps = 10/410 (2%)
Query: 157 DRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTL 216
D G V++EV+A M APR++TREDVVE+ HG V + RVL+ L GA LA+PGEFT
Sbjct: 24 DEDGEVIEEVMATVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLRNGANLAEPGEFTK 83
Query: 217 RAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEAR 276
RAFLNGR+DLSQAE V LI AK+ A A+ + G S L+ ++R + ++ L ++E
Sbjct: 84 RAFLNGRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVN 143
Query: 277 LDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSL 334
+D+ D++ + ++++K + VE L+TA+ K+L+ GL AI+GRPNVGKSSL
Sbjct: 144 IDYPEYDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSL 203
Query: 335 LNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAV 394
LN + E+AIVT+IAGTTRD+IE V V GVP+ L+DTAGIRET+DIVEKIGVERS
Sbjct: 204 LNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKA 263
Query: 395 ALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNK 454
AD I++ ++ + T+ED L + ++V+NK D E +
Sbjct: 264 LADADFILLVLNQNEELTAEDEALF--------EAAAGHNYVVVLNKTDLETKLDIEKVR 315
Query: 455 VGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALV 514
N V T V +G++ LE AI + I AG + N R L + +AL
Sbjct: 316 EIAGENPIVATSLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALDALN 375
Query: 515 RLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + I+ +P+D ID+ A LG+I+G+ + +E+L +F +FC+GK
Sbjct: 376 AVTTGIQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 425
>gi|291532561|emb|CBL05674.1| tRNA modification GTPase trmE [Megamonas hypermegale ART12/1]
Length = 465
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 168/442 (38%), Positives = 260/442 (58%), Gaps = 10/442 (2%)
Query: 124 GRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVV 183
G V + K KK G++ SH V YG ++D GNV+DE L + M AP SYT+E+VV
Sbjct: 33 GIVASKLFKCAKKDLTVGNFE--SHKVVYGKIVDEKGNVIDEALCIAMWAPNSYTKENVV 90
Query: 184 ELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAA 243
E+Q HG + +RR+L L+ GA +A+PGEFT RAFLNGRLDLSQA++V +I A++ A+
Sbjct: 91 EIQSHGGALVVRRILELALQNGARMAEPGEFTKRAFLNGRLDLSQAQSVMDIIKARTDAS 150
Query: 244 ADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDV 302
A +QG FS + ++R +E++ +EA +DF +D++ + + K+ ++ +
Sbjct: 151 LRMAAGHLQGKFSDEIKAMRHDILEVIAHLEASIDFPEDDIEDVAKDEASAKVRSIKNRI 210
Query: 303 ENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVT 362
E L T N ++L+ GL AI+G+PNVGKSSLLN + +RAIVT+I GTTRD +E
Sbjct: 211 EEMLSTFNTGRILRDGLVTAIIGKPNVGKSSLLNTLLREDRAIVTDIPGTTRDSLEEYAN 270
Query: 363 VCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRI 422
+ GVP+ ++DTAGIRET+D VE+IGVE+S + AD+I+ T ED E++N +
Sbjct: 271 IGGVPLKIIDTAGIRETEDKVEQIGVEKSMSYVQKADLILALFDTSSDLTKEDEEIINLL 330
Query: 423 QSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMK 482
Q + ++L N + C + ++ +F ++ GI++LE I+
Sbjct: 331 QGKE------GIVLLTKNDLSCVLDIEDLQKRLQGNFK-YMQISTFNNDGIKELEQEIVN 383
Query: 483 IVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQ 542
V + + N RQ L ++ L ++IE ++ DF ID+R A LG+
Sbjct: 384 RVYSGTVKQTEGVFVNNVRQANALKEAQKYLEDCLNTIEMDMAEDFIVIDIRSAWEKLGE 443
Query: 543 ISGEDISEEVLSNIFGKFCIGK 564
I+G+ + E+++ IF +FCIGK
Sbjct: 444 ITGDTVDEDIIDQIFSQFCIGK 465
>gi|242372605|ref|ZP_04818179.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis
M23864:W1]
gi|242349660|gb|EES41261.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis
M23864:W1]
Length = 459
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 173/478 (36%), Positives = 272/478 (56%), Gaps = 26/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI +I T +G GA+GIVRLSGP A++I ++K KK + + H +
Sbjct: 3 FDTITSISTPMG--EGAIGIVRLSGPQAIEIGDTLYKGKKKLAEVDT---------HTIN 51
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V+EV+ + AP+++T+ED++E+ CHG + + R+L + GA +A+
Sbjct: 52 YGHIVDPETNETVEEVMISVLRAPKTFTKEDIIEINCHGGILTINRILELTMTYGARMAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGE+T RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+L
Sbjct: 112 PGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKGQRQSILEIL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ ++++ + +++ LET K+++ GL IVGRPN
Sbjct: 172 AQVEVNIDYPEYDDVEDATTEFLLEQSKNIKEEINRLLETGTQGKIMREGLSTVIVGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIR+T+DIVEKIGV
Sbjct: 232 VGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD+I+ ++ + T +D L I++ +I++INK D
Sbjct: 292 ERSRKALSEADLILFVLNNNEPLTEDDQTLYEVIKNE--------DVIVIINKTDLEQRL 343
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ N+V D + T + +GI +LE I + ++ + N R L
Sbjct: 344 --DMNEVKEMIGDMPLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLL 401
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++ + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 402 KQARHSIQDAIDAAESGVPMDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459
>gi|15675063|ref|NP_269237.1| tRNA modification GTPase TrmE [Streptococcus pyogenes SF370]
gi|71910607|ref|YP_282157.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS5005]
gi|386362636|ref|YP_006071967.1| tRNA modification GTPase TrmE [Streptococcus pyogenes Alab49]
gi|410680467|ref|YP_006932869.1| tRNA modification GTPase TrmE [Streptococcus pyogenes A20]
gi|21363025|sp|Q99ZU0.1|MNME_STRP1 RecName: Full=tRNA modification GTPase MnmE
gi|13622217|gb|AAK33958.1| putative thiophene degradation protein F [Streptococcus pyogenes M1
GAS]
gi|71853389|gb|AAZ51412.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Streptococcus pyogenes MGAS5005]
gi|350277045|gb|AEQ24413.1| tRNA modification GTPase TrmE [Streptococcus pyogenes Alab49]
gi|395453845|dbj|BAM30184.1| tRNA modification GTPase [Streptococcus pyogenes M1 476]
gi|409693056|gb|AFV37916.1| tRNA modification GTPase TrmE [Streptococcus pyogenes A20]
Length = 458
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 178/480 (37%), Positives = 274/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+ I VFK G + SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTDALAIAQSVFK----------GKNLEQVASHTIN 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG +++ + G ++DEV+ MLAP+++TRE+VVE+ HG +L+ + GA +A+
Sbjct: 55 YGHIINPKTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A A+ + G S L+ R + + L
Sbjct: 115 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +E+ L TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTTALLREKTQEFQSLLESLLRTAKRGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 235 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D LLN Q + + I+++NK D
Sbjct: 295 ERSKKALQEADLVLLVLNASEKLTDQDRALLNLSQDSNR--------IILLNKTDLEQKI 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +D++ +T Q I +E I ++ GL + A + N R
Sbjct: 347 ELEQLP-----DDYIPISVLTNQNINLIEDRINQLFFDNAGLVEQDA---TYLSNARHIS 398
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + + +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 399 LIEKAVQSLEAVNDGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458
>gi|225870695|ref|YP_002746642.1| tRNA modification GTPase TrmE [Streptococcus equi subsp. equi 4047]
gi|225700099|emb|CAW94188.1| tRNA modification GTPase TrmE [Streptococcus equi subsp. equi 4047]
Length = 458
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 178/477 (37%), Positives = 269/477 (56%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG A+DI +FK G SH +
Sbjct: 7 FDTIAAISTPLG--EGAIGIVRLSGTKALDIAKSIFK----------GKDLTTVASHTLN 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++ G V+DEV+ MLAP+++TREDV+E+ HG +L+ ++ GA +A+
Sbjct: 55 YGHIIKPSTGEVIDEVMVSVMLAPKTFTREDVIEINTHGGIAVTNDILQLLIKQGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V LI AK+ A A+ + G S L++ R + + L
Sbjct: 115 PGEFTKRAFLNGRIDLTQAEAVMDLIRAKTDKAMSIAIKQLDGSLSQLISDTRQEILNTL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ DK +E L TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTTALLRDKTREFQTLLEQLLRTAKRGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + G+P+ L+DTAGIRETDD+VE+IGV
Sbjct: 235 VGKSSLLNTLLREDKAIVTDIAGTTRDVIEEYVNIKGIPLKLVDTAGIRETDDLVEQIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D LL Q + + I+++NK D
Sbjct: 295 ERSKKALQEADLVLLVLNASEKLTEQDKALLALSQDSNR--------IILLNKTDLEQVI 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
+ + + + Q I +E I +I H + + N R +
Sbjct: 347 EKDQLP-----EEAIPISVLQNQNIDLIEDRINQIFFDHTGLIEQDATYLSNARHISLIE 401
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++L + + +P+D IDL A LG+I+G+ +E+++ +F +FC+GK
Sbjct: 402 QAVQSLEAVNEGLALGMPVDLLQIDLTRAWEILGEITGDAAPDELITQLFSQFCLGK 458
>gi|385839577|ref|YP_005877207.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Lactococcus lactis
subsp. cremoris A76]
gi|358750805|gb|AEU41784.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Lactococcus lactis
subsp. cremoris A76]
Length = 455
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 179/475 (37%), Positives = 272/475 (57%), Gaps = 28/475 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVRLSG A+ I V+K G + SH +
Sbjct: 7 FDTIAAISTPLG--EGAIAIVRLSGTDALKIAQSVYK----------GKNLAQVASHTIN 54
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG + + +VDEV+ M AP+++TRED+VE+ HG + +L+ L GA LA+P
Sbjct: 55 YGHIFEEE-RLVDEVMVSVMRAPKTFTREDIVEINTHGGIAVTQEILQLLLRNGARLAEP 113
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE+V LI AK+ AA+ A+ + G S ++ ++R +E L
Sbjct: 114 GEFTKRAFLNGRIDLAQAESVMDLIRAKTDKAANIAVKQLDGSLSKMINNIRQDILESLA 173
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + ++++K Q +EN L TA K+L+ GL+ AI+GRPNV
Sbjct: 174 QVEVNIDYPEYDDVETMTSQMLIEKTAHFEQLLENLLSTAKRGKILREGLKTAIIGRPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+IAGTTRDVI + GVP+ L+DTAGIRETDD+VE IGVE
Sbjct: 234 GKSSLLNQLLREEKAIVTDIAGTTRDVITEFANIGGVPLELVDTAGIRETDDLVEAIGVE 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ + A T +D ELL ++ + I+++NK D
Sbjct: 294 RSKKALAEADLVLLVLDASLELTDKDLELLELSKNANR--------IVLLNKTDLPEKL- 344
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+ N++ F + A+ + + +E I +I +I A N R +
Sbjct: 345 -DINQISGDF---IRISALKNENLSAVEEKINQIFFAGEIEAKDATVLSNARHISLVEEA 400
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+AL + + LP+D +D+ LG+I+GE +E+++ +F +FC+GK
Sbjct: 401 LKALKEANNGLALGLPVDLIQVDVTRCWQLLGEITGEAAPDELITQLFSQFCLGK 455
>gi|51858159|dbj|BAD42317.1| Thiophene and furan oxidation protein [Symbiobacterium thermophilum
IAM 14863]
Length = 437
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 186/458 (40%), Positives = 256/458 (55%), Gaps = 26/458 (5%)
Query: 112 VRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAVPM 171
+R+SG A+ + R+F+P ++ G R SH V YG V+ G+ +DE LA+ M
Sbjct: 1 MRISGADALQVAERIFRP-----RRGRPLGCRR--SHTVTYGWVVTPGGDRIDEALALVM 53
Query: 172 LAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAEN 231
P SYT EDVVELQCHG ++ +RRVL L+AGA LA+PGEFT RAFLNGRLDLSQAE
Sbjct: 54 RGPHSYTGEDVVELQCHGGQLAVRRVLEQALQAGARLAEPGEFTRRAFLNGRLDLSQAEA 113
Query: 232 VEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLV 291
V LI AK+ A AA+A ++G + +R + +E++ +EA +DF P L L +
Sbjct: 114 VVDLIRAKTDRAMAAAVAHLRGSLRQAIGRIRERLMEMMAHLEADIDF----PELELEVQ 169
Query: 292 MDKIHAMS-----QDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIV 346
+ A +VE L A ++L+ GL+ + GRPNVGKSSLLN + RAIV
Sbjct: 170 TREEVAAGCAWCLGEVERLLGGARTGRILREGLRAVLAGRPNVGKSSLLNRLVRENRAIV 229
Query: 347 TEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVS 406
T I GTTRDVI V + GVPV L DTAG+R TDD VE+IGV R+ A ++++ V
Sbjct: 230 TPIPGTTRDVIAEWVELGGVPVQLFDTAGLRPTDDPVERIGVARTHEALAQAHLVLVVVD 289
Query: 407 AVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTC 466
A G ED E ++++ + V NKID P+ + V
Sbjct: 290 AAAGLGPEDREWISQLPQGAAR-------VGVANKIDLNPAFELSALREALGGAPVVGVS 342
Query: 467 AVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPL 526
A TG+G LE + ++ G VN RQ E + R + L ++++E L
Sbjct: 343 AETGEGFDALEAEVARVAGAFD---ASEELLVNARQAEAIRRARNHLRDAQATLESGLGD 399
Query: 527 DFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ IDLR A +ALG+++GE EE+L IF +FCIGK
Sbjct: 400 ELVAIDLRAAWMALGEVTGETAGEELLDQIFSRFCIGK 437
>gi|298243558|ref|ZP_06967365.1| tRNA modification GTPase TrmE [Ktedonobacter racemifer DSM 44963]
gi|297556612|gb|EFH90476.1| tRNA modification GTPase TrmE [Ktedonobacter racemifer DSM 44963]
Length = 474
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 185/483 (38%), Positives = 270/483 (55%), Gaps = 25/483 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T G G VGI+R+SG A +V + + ++ P +H + Y
Sbjct: 5 TIAAIATPQG--VGGVGIIRVSGSDAFSLVAPLLRRPSREDIPPV------PPTHQLTYR 56
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
V++D ++DEVL M AP +YT EDVVE+Q HG + LRR+LR+ L GA +A PG
Sbjct: 57 VIIDPATQEILDEVLVAFMRAPHTYTCEDVVEIQGHGGPLILRRILRSVLAQGARMANPG 116
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFTLRAFLNGRLDL+QAE V LI +++ A+ ++G S V R + +
Sbjct: 117 EFTLRAFLNGRLDLAQAEAVMDLIGSQTEVGQRLAMQQLRGKLSDQVEHARTSMLGAIAR 176
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IEA +DF +D++P ++ I + + L + +L + GL+ AI+GRPNVGK
Sbjct: 177 IEASIDFPEDDIPTPQAEELLPFIEEAQRQIARLLAGSEQGRLYRQGLRTAIIGRPNVGK 236
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLNA + ERAIVT IAGTTRD +E + G+P+ L+DTAGI T D VE++GV+RS
Sbjct: 237 SSLLNALLRIERAIVTPIAGTTRDTVEEIANLRGIPLHLIDTAGITPTQDPVEQLGVQRS 296
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQS-----NKKSTESSTPMILVINKIDC-- 444
A ADVI+ T +D ++ +++ ++ + P+++VINK DC
Sbjct: 297 RLAAETADVILHVFDGATALTEQDWQVAQELRAMGYGEKREGQAARRPVVVVINKADCEQ 356
Query: 445 ---APSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQR 501
+ + W V T +TG+G++ LE + ++V + + R
Sbjct: 357 VIDVAAIQSFWQDA-----SLVQTSTLTGEGLEALENTLAELVQAGNVSGNESVLITSAR 411
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
E L R E L S+ +++PLDF +IDLR A ALG+++GE SE++L IF +FC
Sbjct: 412 HQEALRRGAEHLNAAILSLGQKVPLDFVSIDLRAAYDALGEVTGETASEDLLDRIFSEFC 471
Query: 562 IGK 564
IGK
Sbjct: 472 IGK 474
>gi|251811361|ref|ZP_04825834.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis
BCM-HMP0060]
gi|282874718|ref|ZP_06283597.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis SK135]
gi|418629060|ref|ZP_13191575.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU127]
gi|251805110|gb|EES57767.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis
BCM-HMP0060]
gi|281296434|gb|EFA88949.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis SK135]
gi|374834793|gb|EHR98428.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU127]
Length = 459
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 175/478 (36%), Positives = 274/478 (57%), Gaps = 26/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI +I T +G GA+GIVRLSGP A++I ++K KKK S +H +
Sbjct: 3 FDTITSISTPMG--EGAIGIVRLSGPQAIEIGDILYKG---KKKLSE------VETHTIN 51
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V+EV+ + AP+++TRED++E+ CHG + + R+L + GA +A+
Sbjct: 52 YGHIIDPETNETVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRILELTMTYGARMAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGE+T RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+L
Sbjct: 112 PGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEIL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + ++++ + +++ LET K+++ GL IVGRPN
Sbjct: 172 AQVEVNIDYPEYDDVEDATTDFLLEQSKRIKEEINQLLETGAQGKIMREGLSTVIVGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIR+T+DIVEKIGV
Sbjct: 232 VGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP-- 446
ERS AD+I+ ++ + T +D L I++ +I++INK D
Sbjct: 292 ERSRKALSEADLILFVLNNNEPLTEDDQTLFEVIKNE--------DVIVIINKTDLEQRL 343
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
S +G+ + T + +GI +LE I + ++ + N R L
Sbjct: 344 DVSELREMIGDM--PLIQTSMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLL 401
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++++ + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 402 KQARQSIQDAIDAAESGIPMDMVQIDLTRTWEILGEILGESASDELIDQLFSQFCLGK 459
>gi|237741002|ref|ZP_04571483.1| thiophene and furan oxidation protein thdf [Fusobacterium sp.
4_1_13]
gi|229431046|gb|EEO41258.1| thiophene and furan oxidation protein thdf [Fusobacterium sp.
4_1_13]
Length = 455
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 174/480 (36%), Positives = 282/480 (58%), Gaps = 34/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T G G + IVR+SG +++I+ ++FKP K KK S ++ +
Sbjct: 3 LDTIAAISTPRG--EGGISIVRMSGQDSLNILEKIFKP---KNKKVSELKNYS-----IN 52
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG ++D ++VDEVL M AP +YTRED++E+ CHG + +VL L+ GA +A+
Sbjct: 53 YGHIIDNE-HIVDEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVILKNGARIAEI 111
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V +I K+ + +L ++G + +++ ++L
Sbjct: 112 GEFTKRAFLNGRIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAA 171
Query: 272 EIEARLDF-----DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
I LD+ DD +P NLV D + S ++++ + + + K+++ G++ AI+G+
Sbjct: 172 HINVVLDYPEEGIDDPVPE---NLV-DNLKKASAEIKDLVSSYDKGKIIKDGIKTAIIGK 227
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSS+LN+ + +RAIVT I GTTRD+IE + + G+P+ L+DTAGIR TDDIVE I
Sbjct: 228 PNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLIDTAGIRNTDDIVENI 287
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVE+S+ + AD+I+ + ED + + I ++K +I ++NKID
Sbjct: 288 GVEKSKELINSADLILYVIDTSREIDEEDYRIYDIINTDK--------VIGILNKIDIKR 339
Query: 447 SAS-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCE 504
+ +E+ K+ + A++ GI +LE I K + + ++ + N R
Sbjct: 340 NTDLSEFPKI----EKWIEISALSKTGIDNLENEIYKYIMKENVEDSSQKLVITNVRHKS 395
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L +T EAL+ + +I+ LP+D +D++DA +L +++GE SE++L +IF FC+GK
Sbjct: 396 ALEKTNEALLNIIETIDMGLPMDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455
>gi|386344673|ref|YP_006040837.1| tRNA modification GTPase mnmE [Streptococcus thermophilus JIM 8232]
gi|339278134|emb|CCC19882.1| tRNA modification GTPase mnmE [Streptococcus thermophilus JIM 8232]
Length = 456
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 177/479 (36%), Positives = 274/479 (57%), Gaps = 35/479 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+ I +VFK G SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTDAIAIANKVFK----------GKNLETVDSHTIN 54
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ + ++DEV+ M AP+++TREDVVE+ HG L+ + +GA +A+P
Sbjct: 55 YGHIVE-NNEIIDEVMVSVMRAPKTFTREDVVEINTHGGVAVTNETLQLLIRSGARMAEP 113
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A++ + G +L+ + R + + L
Sbjct: 114 GEFTKRAFLNGRIDLTQAEAVMDLIRAKTDKAMTVAVSQLDGSLKNLINNTRQEILNTLA 173
Query: 272 EIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + NLV +K +EN L TA K+L+ GL AI+GRPNV
Sbjct: 174 QVEVNIDYPEYDDVEEVTTNLVREKTQEFQALLENLLATAKRGKILREGLSTAIIGRPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIR+TDD+VEKIGVE
Sbjct: 234 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVE 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL+ Q++ + I+++NK D +
Sbjct: 294 RSKKALEEADLVLLVLNSSEPLTDQDRTLLDISQNSNR--------IILLNKTDLPQAIQ 345
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCEQ 505
E D + + + I +E I ++ GL + A + N R
Sbjct: 346 TEELP-----EDLIPISVLKNENIDKIEDRINQLFFDNAGLVEKDA---TYLSNARHISL 397
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 IEKALESLEAVNQGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 456
>gi|253581093|ref|ZP_04858353.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847629|gb|EES75599.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 474
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 183/488 (37%), Positives = 280/488 (57%), Gaps = 34/488 (6%)
Query: 85 SEEKAGTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWR 144
SEEK +TIAAI T++ +GI+R+SG A+D++ R+++ KKK
Sbjct: 13 SEEKK-METTIAAISTAMSAS--GIGIIRISGENAMDVISRIYRSKGGKKKIKE-----V 64
Query: 145 PTSHVVEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEA 204
PT H + YG + D ++DEVL + M APR++T ED VE+ CHG ++RVL L+
Sbjct: 65 PT-HTIHYGYIYDGE-ELIDEVLVMIMHAPRTFTGEDTVEIDCHGGVYAMQRVLDTVLKN 122
Query: 205 GATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRA 264
GA +A+PGEFT RAFLNGR+DLSQAE V +I AK+ A +++ ++G + +R
Sbjct: 123 GAEIAEPGEFTKRAFLNGRMDLSQAEAVMDVIQAKNEYALRSSMDQLRGSVQKAIRDIRE 182
Query: 265 KCIELLTEIEARLDFDDEMPPLNLNL------VMDKIHAMSQDVENALETANYDKLLQSG 318
K I + IE+ LD P +++L +++ + ++V+ L+T++ K++Q G
Sbjct: 183 KLIYHIAYIESALD-----DPEHISLDGYPQELLEVVDNEQKEVKRLLKTSSDGKMIQEG 237
Query: 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRE 378
+Q I+G+PN GKSSLLN RAIVT+IAGTTRD++E +T+ G+ + ++DTAGIRE
Sbjct: 238 IQTVILGKPNAGKSSLLNLLIGENRAIVTDIAGTTRDILEEYITLHGISLKIIDTAGIRE 297
Query: 379 TDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILV 438
T DIVEKIGV+R+ +A AD+I+ V + D E++ + K I++
Sbjct: 298 TKDIVEKIGVDRAREMAQKADLILYVVDSSVPLDENDEEIMEMLTGKKA--------IIL 349
Query: 439 INKIDCAPSASNEW--NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRW 496
NK D P E K G+ + A +GI +LE I + +I +
Sbjct: 350 YNKTDLQPEIQPEILKEKTGHPV---IPISAKEEKGITELEEQIKDMFFGGEISFNDEVY 406
Query: 497 AVNQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNI 556
N R L +L +++SIE +P DF++IDL +A LG+I GE + E++++ I
Sbjct: 407 ITNARHKAALEEADRSLDLVRNSIEMGMPEDFFSIDLMNAYENLGKILGESVGEDLVNEI 466
Query: 557 FGKFCIGK 564
F KFC+GK
Sbjct: 467 FSKFCMGK 474
>gi|172059049|ref|YP_001815509.1| tRNA modification GTPase TrmE [Exiguobacterium sibiricum 255-15]
gi|205829139|sp|B1YGA8.1|MNME_EXIS2 RecName: Full=tRNA modification GTPase MnmE
gi|171991570|gb|ACB62492.1| tRNA modification GTPase TrmE [Exiguobacterium sibiricum 255-15]
Length = 460
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 187/481 (38%), Positives = 269/481 (55%), Gaps = 32/481 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT---SH 148
F TIAAI T +G GA+ IVRLSGP AV+ RV++ G+ R T +H
Sbjct: 4 FDTIAAISTPMG--EGAIAIVRLSGPKAVETADRVYR------------GANRLTDVPTH 49
Query: 149 VVEYGVVLDRHG-NVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEA-GA 206
+ YG ++++ VVDEV+ M AP+++TREDVVEL CHG V + RVL LE
Sbjct: 50 TIHYGKLVEQTTEQVVDEVMVSVMRAPKTFTREDVVELNCHGGIVAVNRVLELILEQPDV 109
Query: 207 TLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKC 266
LA+PGEFT RAFLNGR+DLSQAE V LI AK+ A A+ I+G S LV +R +
Sbjct: 110 RLAEPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMTVAVGQIEGRLSKLVQDLREQL 169
Query: 267 IELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVG 325
++ + IE +D+ + + + +V + + + L TA K+L+ GL AI+G
Sbjct: 170 LQTIASIEVNIDYPEYDAEEMTQQIVQKDAGEVRRILTELLATARQGKILREGLSTAIIG 229
Query: 326 RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEK 385
RPNVGKSSLLN + +AIVT+IAGTTRD IE V V GVP+ L+DTAGIRET+DIVE+
Sbjct: 230 RPNVGKSSLLNTLVQEAKAIVTDIAGTTRDTIEEYVNVRGVPLKLIDTAGIRETEDIVER 289
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445
+GVE+S AD+I++ ++ D T ED L I+ I+++NK D
Sbjct: 290 MGVEKSRQALNSADLILLVLNGNDALTEEDVLLFEAIRGMNA--------IIIVNKSDLT 341
Query: 446 PSASNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQC 503
+ + +V + V T + G+ DLE AI + + + N R
Sbjct: 342 QAI--DLTRVSELADGRPVVTTSLLEEAGVTDLEAAIASLFFEQGVEGQDMTYVSNARHI 399
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
+ + + + + + E +P+D IDLR A LG+I+G+ + +L +F +FC+G
Sbjct: 400 QLIKQASQMIEDALGAAEASMPIDMVQIDLRRAWDTLGEINGDTAQDSLLDKLFSQFCLG 459
Query: 564 K 564
K
Sbjct: 460 K 460
>gi|27469335|ref|NP_765972.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis ATCC
12228]
gi|57865942|ref|YP_187603.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis RP62A]
gi|293367584|ref|ZP_06614237.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417656847|ref|ZP_12306526.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU028]
gi|417909226|ref|ZP_12552965.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU037]
gi|417912696|ref|ZP_12556382.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU109]
gi|418604543|ref|ZP_13167890.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU041]
gi|418608943|ref|ZP_13172115.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU065]
gi|418612361|ref|ZP_13175405.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU117]
gi|418617389|ref|ZP_13180287.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU120]
gi|418624177|ref|ZP_13186854.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU125]
gi|418626526|ref|ZP_13189124.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU126]
gi|418664960|ref|ZP_13226420.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU081]
gi|419769963|ref|ZP_14296051.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-250]
gi|419770819|ref|ZP_14296885.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-K]
gi|420166079|ref|ZP_14672767.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM088]
gi|420170946|ref|ZP_14677501.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM070]
gi|420172902|ref|ZP_14679399.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM067]
gi|420181849|ref|ZP_14688008.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM049]
gi|420188878|ref|ZP_14694879.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM039]
gi|420194339|ref|ZP_14700154.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM021]
gi|420197587|ref|ZP_14703310.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM020]
gi|420202673|ref|ZP_14708263.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM018]
gi|420207792|ref|ZP_14713278.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM008]
gi|420209616|ref|ZP_14715052.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM003]
gi|420215366|ref|ZP_14720635.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIH05005]
gi|420216534|ref|ZP_14721741.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIH05001]
gi|420219938|ref|ZP_14724931.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIH04008]
gi|420222769|ref|ZP_14727684.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIH08001]
gi|420224642|ref|ZP_14729482.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIH06004]
gi|420227726|ref|ZP_14732490.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIH05003]
gi|420230703|ref|ZP_14735382.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIH04003]
gi|420233025|ref|ZP_14737647.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis
NIH051668]
gi|421608625|ref|ZP_16049841.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis AU12-03]
gi|32171815|sp|Q8CMN5.1|MNME_STAES RecName: Full=tRNA modification GTPase MnmE
gi|81675521|sp|Q5HS36.1|MNME_STAEQ RecName: Full=tRNA modification GTPase MnmE
gi|27316885|gb|AAO06060.1|AE016752_93 putative thiophene and furan oxidation protein [Staphylococcus
epidermidis ATCC 12228]
gi|57636600|gb|AAW53388.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis RP62A]
gi|291318297|gb|EFE58690.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329735775|gb|EGG72056.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU028]
gi|341653817|gb|EGS77583.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU037]
gi|341657188|gb|EGS80881.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU109]
gi|374404766|gb|EHQ75734.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU041]
gi|374409412|gb|EHQ80206.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU065]
gi|374409741|gb|EHQ80516.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU081]
gi|374818682|gb|EHR82832.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU120]
gi|374819663|gb|EHR83783.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU117]
gi|374827901|gb|EHR91751.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU125]
gi|374831596|gb|EHR95333.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU126]
gi|383357645|gb|EID35112.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-250]
gi|383362646|gb|EID39993.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-K]
gi|394234134|gb|EJD79719.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM088]
gi|394239316|gb|EJD84761.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM070]
gi|394241168|gb|EJD86586.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM067]
gi|394250956|gb|EJD96087.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM049]
gi|394253837|gb|EJD98827.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM039]
gi|394264916|gb|EJE09584.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM021]
gi|394265688|gb|EJE10339.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM020]
gi|394269214|gb|EJE13752.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM018]
gi|394275025|gb|EJE19417.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM008]
gi|394278513|gb|EJE22828.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM003]
gi|394282342|gb|EJE26543.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIH05005]
gi|394287208|gb|EJE31173.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIH04008]
gi|394288723|gb|EJE32627.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIH08001]
gi|394291795|gb|EJE35581.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIH05001]
gi|394294492|gb|EJE38171.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIH06004]
gi|394296125|gb|EJE39755.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIH04003]
gi|394296577|gb|EJE40202.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIH05003]
gi|394300585|gb|EJE44079.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis
NIH051668]
gi|406655785|gb|EKC82208.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis AU12-03]
Length = 459
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 175/478 (36%), Positives = 274/478 (57%), Gaps = 26/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI +I T +G GA+GIVRLSGP A++I ++K KKK S +H +
Sbjct: 3 FDTITSISTPMG--EGAIGIVRLSGPQAIEIGDILYKG---KKKLSE------VETHTIN 51
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V+EV+ + AP+++TRED++E+ CHG + + R+L + GA +A+
Sbjct: 52 YGHIIDPETNETVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRILELTMTYGARMAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGE+T RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+L
Sbjct: 112 PGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEIL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + ++++ + +++ LET K+++ GL IVGRPN
Sbjct: 172 AQVEVNIDYPEYDDVEDATTDFLLEQSKRIKEEINQLLETGAQGKIMREGLSTVIVGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIR+T+DIVEKIGV
Sbjct: 232 VGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP-- 446
ERS AD+I+ ++ + T +D L I++ +I++INK D
Sbjct: 292 ERSRKALSEADLILFVLNNNEPLTEDDQTLFEVIKNE--------DVIVIINKTDLEQRL 343
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
S +G+ + T + +GI +LE I + ++ + N R L
Sbjct: 344 DVSELREMIGDM--PLIQTSMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLL 401
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++++ + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 402 KQARQSIQDAIDAAESGIPMDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459
>gi|410723298|ref|ZP_11362542.1| tRNA modification GTPase TrmE [Clostridium sp. Maddingley MBC34-26]
gi|410603344|gb|EKQ57779.1| tRNA modification GTPase TrmE [Clostridium sp. Maddingley MBC34-26]
Length = 460
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 189/483 (39%), Positives = 278/483 (57%), Gaps = 36/483 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI+AI T IG G V I+R+SG A+ I ++FKP + + ++ ++
Sbjct: 4 FDTISAIATPIG--EGGVAIIRISGEKALKIASKIFKP-------KNSYDIEKMETYTMK 54
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N ++DEV+ M AP SYT E+VVE+ CHG V VL ++AGA LA+
Sbjct: 55 YGNIIDLESNEIIDEVILSYMKAPNSYTGENVVEINCHGGIVSTNSVLNEVIKAGARLAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I+AK+ A AA+ G S+ + ++R + +L
Sbjct: 115 PGEFTKRAFLNGRIDLSQAEAVMDIITAKTELAMKAAMLQSNGALSNEIANLRRYLLNVL 174
Query: 271 TEIEARLDF-DDEMPPLNLNL---VMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
IE +DF +D+ ++ NL V D I V+ L A+ K+++ GL + IVG+
Sbjct: 175 ALIEYAVDFTEDDEDVIDANLLTEVKDGISKTIVKVKGLLANADEGKIIREGLNMVIVGK 234
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLNA K RAIVT+I GTTRDVIE + V G+P+ ++DTAGIRET+DIVEKI
Sbjct: 235 PNVGKSSLLNALLKERRAIVTDIPGTTRDVIEEYINVDGIPIRIIDTAGIRETEDIVEKI 294
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVE+S+ AD+II+ + A + +D ++++I+ K I ++NK+D
Sbjct: 295 GVEKSKEKIEEADLIILMLDASREISEDDQLIIDKIKHKK--------YITLLNKVDLDI 346
Query: 447 SAS-----NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQR 501
S N NK+G S A TG+GI DL+ I + +I + + N R
Sbjct: 347 KISRDIIDNLGNKIGIS--------AKTGEGIDDLKREIKNLFFNGEISSESLIIS-NTR 397
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
+ L + + LD +I + A ALG+I+G+++ E++L+ IF +FC
Sbjct: 398 HKQALYKALDNCNIALDKFNANEYLDLISIYITAAMKALGEITGDELEEDLLNKIFSEFC 457
Query: 562 IGK 564
+GK
Sbjct: 458 VGK 460
>gi|293374951|ref|ZP_06621247.1| tRNA modification GTPase TrmE [Turicibacter sanguinis PC909]
gi|325844341|ref|ZP_08168117.1| tRNA modification GTPase TrmE [Turicibacter sp. HGF1]
gi|292646428|gb|EFF64442.1| tRNA modification GTPase TrmE [Turicibacter sanguinis PC909]
gi|325489208|gb|EGC91590.1| tRNA modification GTPase TrmE [Turicibacter sp. HGF1]
Length = 452
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 171/474 (36%), Positives = 277/474 (58%), Gaps = 29/474 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIA I T++G GA+ I+RLSG A+DI ++F+ G SH + YG
Sbjct: 5 TIAGISTAMG--EGAISIIRLSGDEALDIANKIFR----------GKDLKSVASHTINYG 52
Query: 154 VVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+ D + VDEVL M AP+++T ED+VE+ CHG + ++L L AGA LA+PG
Sbjct: 53 FIYDPETDRKVDEVLVSVMRAPKTFTAEDIVEINCHGGILVTNKILELILLAGARLAEPG 112
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DL+QAE++ +I AKS + AL G+ G S L+ +R + + +L
Sbjct: 113 EFTKRAFLNGRIDLAQAESIMDIIHAKSEQSLSLALNGLDGRVSRLIKEMREEILNILAN 172
Query: 273 IEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
IE +D+ D++ + ++++ + + + + L+TA K+L+ G++ I+GRPNVG
Sbjct: 173 IEVNIDYPEYDDVEEMTNDILLPRSIDIHEKMLKLLDTAKTGKILRDGIKTVIIGRPNVG 232
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLN + E+AIVT IAGTTRD +E + + G+ + L+DTAGIR+T+DIVE IGVE+
Sbjct: 233 KSSLLNQLMREEKAIVTNIAGTTRDTVEGYINIGGLTLNLIDTAGIRDTEDIVEAIGVEK 292
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S+ + A+++++ ++ + T++D ELL S + I+++NK D
Sbjct: 293 SKKLINEAELVLLVLNNNEKLTADDRELL--------SLTNDKNRIIILNKTDLETQIER 344
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+ +++ T V +GI+ LE I K+ + I A + N R +L +
Sbjct: 345 D------ELPNYIETSMVLEKGIEVLENQIKKMFEIGDIGAKDMTYLSNARHIAKLKQAI 398
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++ S+++ + +D ID+++A +LG+I GED+ + +L +F KFC+GK
Sbjct: 399 NSINDAISAMQLGMLVDMVEIDIKNAWYSLGEIIGEDMGDSLLDELFSKFCLGK 452
>gi|168494446|ref|ZP_02718589.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC3059-06]
gi|221231770|ref|YP_002510922.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae ATCC
700669]
gi|225854518|ref|YP_002736030.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae JJA]
gi|415698360|ref|ZP_11457133.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 459-5]
gi|415749416|ref|ZP_11477360.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SV35]
gi|415752100|ref|ZP_11479211.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SV36]
gi|417686512|ref|ZP_12335789.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41301]
gi|418073803|ref|ZP_12711061.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA11184]
gi|418078508|ref|ZP_12715731.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 4027-06]
gi|418080472|ref|ZP_12717684.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 6735-05]
gi|418089411|ref|ZP_12726568.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA43265]
gi|418098386|ref|ZP_12735485.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 6901-05]
gi|418105085|ref|ZP_12742143.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44500]
gi|418114514|ref|ZP_12751504.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 5787-06]
gi|418116752|ref|ZP_12753723.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 6963-05]
gi|418123289|ref|ZP_12760223.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44378]
gi|418127875|ref|ZP_12764771.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae NP170]
gi|418135077|ref|ZP_12771934.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA11426]
gi|418173389|ref|ZP_12810003.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41277]
gi|418178052|ref|ZP_12814636.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41565]
gi|418182779|ref|ZP_12819339.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA43380]
gi|418216467|ref|ZP_12843191.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae
Netherlands15B-37]
gi|419431552|ref|ZP_13971692.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae EU-NP05]
gi|419433526|ref|ZP_13973644.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA40183]
gi|419440295|ref|ZP_13980346.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA40410]
gi|419463937|ref|ZP_14003830.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA04175]
gi|419468882|ref|ZP_14008753.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA06083]
gi|419473082|ref|ZP_14012933.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13430]
gi|419497200|ref|ZP_14036910.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47522]
gi|419534487|ref|ZP_14073990.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17457]
gi|421281001|ref|ZP_15731799.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA04672]
gi|421309452|ref|ZP_15760079.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA62681]
gi|183575548|gb|EDT96076.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC3059-06]
gi|220674230|emb|CAR68765.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae ATCC
700669]
gi|225724002|gb|ACO19855.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae JJA]
gi|332075364|gb|EGI85833.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41301]
gi|353747699|gb|EHD28355.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 4027-06]
gi|353750650|gb|EHD31288.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA11184]
gi|353753012|gb|EHD33636.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 6735-05]
gi|353762097|gb|EHD42660.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA43265]
gi|353769746|gb|EHD50262.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 6901-05]
gi|353777150|gb|EHD57623.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44500]
gi|353787256|gb|EHD67663.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 5787-06]
gi|353789729|gb|EHD70121.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 6963-05]
gi|353797376|gb|EHD77711.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44378]
gi|353800336|gb|EHD80650.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae NP170]
gi|353840088|gb|EHE20162.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41277]
gi|353844826|gb|EHE24869.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41565]
gi|353848920|gb|EHE28930.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA43380]
gi|353873518|gb|EHE53379.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae
Netherlands15B-37]
gi|353902314|gb|EHE77844.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA11426]
gi|379539156|gb|EHZ04335.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA04175]
gi|379546985|gb|EHZ12123.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA06083]
gi|379552589|gb|EHZ17678.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13430]
gi|379565221|gb|EHZ30214.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17457]
gi|379576527|gb|EHZ41451.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA40183]
gi|379579727|gb|EHZ44626.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA40410]
gi|379601193|gb|EHZ65969.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47522]
gi|379630119|gb|EHZ94709.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae EU-NP05]
gi|381309796|gb|EIC50629.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SV36]
gi|381317012|gb|EIC57748.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 459-5]
gi|381317710|gb|EIC58435.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SV35]
gi|395882162|gb|EJG93209.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA04672]
gi|395910873|gb|EJH21742.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA62681]
Length = 457
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 181/480 (37%), Positives = 276/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + IV ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIVQKIFK----------GKDLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEADLVLLVLNASEQLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 346 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|417940470|ref|ZP_12583758.1| tRNA modification GTPase TrmE [Streptococcus oralis SK313]
gi|343389351|gb|EGV01936.1| tRNA modification GTPase TrmE [Streptococcus oralis SK313]
Length = 457
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 181/480 (37%), Positives = 274/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPQTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V DK Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVRDKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD++++ ++A + T++D +LL Q T I+++NK D P A
Sbjct: 294 ERSRKALKEADLVLLVLNASEPLTAQDRQLLKISQ--------DTNRIILLNKTDL-PEA 344
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKI----VGLHQIPAGGRRWAVNQRQCE 504
+ D + + Q I +E I ++ GL + A + N R
Sbjct: 345 I----ETSELPEDVIRISVLKNQNIDKIEERINELFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|340759249|ref|ZP_08695821.1| tRNA modification GTPase mnmE [Fusobacterium varium ATCC 27725]
gi|340577301|gb|EES63984.2| tRNA modification GTPase mnmE [Fusobacterium varium ATCC 27725]
Length = 456
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 180/483 (37%), Positives = 278/483 (57%), Gaps = 39/483 (8%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T G G +GIVR+SG A++I+G++F+P KK G + S +
Sbjct: 3 FDTIAAISTPRG--EGGIGIVRISGNHALEILGKIFRPKSKKV-----IGDLKNFS--IN 53
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG + D N++DEVL M AP +YT+ED+VE+ CHG V +VL L+ GA L++
Sbjct: 54 YGHLYDGE-NLIDEVLVSVMKAPNTYTKEDMVEINCHGGFVITEKVLETVLKNGARLSES 112
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGRLDL+QAE V +I K+ + +L ++G + ++ +++
Sbjct: 113 GEFTRRAFLNGRLDLTQAEAVMDIIHGKTEKSVSLSLEQLRGDLKEQIEHLKKLVLDVAA 172
Query: 272 EIEARLDFDDEM--PPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
I LD+ +E PL NLV D + + + +++ + K+++ G++ AIVG+PNV
Sbjct: 173 HINVVLDYPEEGIDDPLPENLV-DNLKEVMDTTDALIKSYDKGKMIKEGIKTAIVGKPNV 231
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSS+LN+ K ERAIVT +AGTTRDVIE V + G+P+ L+DTAGIR+TDD+VE IGVE
Sbjct: 232 GKSSILNSVLKEERAIVTHVAGTTRDVIEEVVNLKGIPLVLVDTAGIRKTDDLVENIGVE 291
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S+ + AD+I+ V ED + I++ K +I ++NKID
Sbjct: 292 KSKKLIESADLILFVVDGSRPLDDEDMRIHEAIKAEK--------VIGILNKIDIREDID 343
Query: 450 -------NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQR 501
N+W ++ A+ QGI ++E I K + + ++ + N R
Sbjct: 344 LSPLTKINKWLEI----------SAIKNQGIDEMEEEIYKHIIEENVEDSSQKITITNIR 393
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
L +TK+++ + +IE LP+D +D++ A +L +++GE SE++L +IF FC
Sbjct: 394 HKSALEKTKQSVENIFETIENGLPMDLMAVDIKGALDSLSEVTGEISSEDLLDHIFSNFC 453
Query: 562 IGK 564
+GK
Sbjct: 454 VGK 456
>gi|340357095|ref|ZP_08679723.1| tRNA modification GTPase TrmE [Sporosarcina newyorkensis 2681]
gi|339618773|gb|EGQ23364.1| tRNA modification GTPase TrmE [Sporosarcina newyorkensis 2681]
Length = 461
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 181/477 (37%), Positives = 279/477 (58%), Gaps = 22/477 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+ IVR+SG A I R+F+ ++ + S +P SH +
Sbjct: 3 FDTIAAISTPMG--EGAIAIVRISGEDAWTIADRIFR------SPAALALSEQP-SHTIH 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG + + +V+EV+ M P+++TRED+VE+ CHG + RVL L GA LA+
Sbjct: 54 YGHLHNPATAEIVEEVMVSIMKGPKTFTREDIVEINCHGGITSVNRVLELVLTEGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI AK+ A + AL ++G S L+ +R +E L
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDKAMNVALNQMEGKLSHLIGDLRQALLETL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + + L+++K + +++ L T++ K+L+ GL IVGRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEVTIPLMIEKGEWVRDEIDQLLRTSSQGKILREGLSTVIVGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + +AIVT+IAGTTRD+IE V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 234 VGKSSLLNSLVQENKAIVTDIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS V AD+I++ V++ + T ED L + + +++++NK D P+
Sbjct: 294 ERSRQVLKEADLILLMVNSSEPLTDEDERLFEAV--------AGMDVLVIVNKTDL-PAK 344
Query: 449 SNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ + + V T ++ QGI +LE AI + I + + N R L
Sbjct: 345 IDLQRVYEVAGKERVITTSILQEQGITELEEAIASLFFEGSIESNDMTYVSNARHIALLK 404
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + + + + +P+D ID+ LG+I G+ + + +++ +F KFC+GK
Sbjct: 405 QARNTIEDAVMAAQTGVPIDMIQIDVTRTWEILGEIIGDTVQDSLITELFSKFCLGK 461
>gi|423320005|ref|ZP_17297880.1| tRNA modification GTPase mnmE [Lactobacillus crispatus FB049-03]
gi|405586223|gb|EKB60013.1| tRNA modification GTPase mnmE [Lactobacillus crispatus FB049-03]
Length = 461
Score = 298 bits (763), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 175/476 (36%), Positives = 270/476 (56%), Gaps = 25/476 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T IG G + IVR+SG A+ I VFK G + +H +
Sbjct: 8 FDTIAAISTPIG--EGGISIVRMSGEDAIKIADEVFK----------GEDLSKVPTHTIH 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G +DE + + AP+++TRED+VE+ CHG V +L+ L GA +A
Sbjct: 56 YGHIIDPDTGKTIDEAMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQLLLSHGARMAD 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF NGR+DL+QAE+V ++ AK+ A A+ + GG + ++R + + L
Sbjct: 116 PGEFTKRAFANGRIDLTQAESVMDIVRAKTDKARQVAVGQLAGGLLHKIQAMRQEILNTL 175
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+E +D+ + + + + D ++ + L+TA K+L++GL AIVGRPNV
Sbjct: 176 ANVEVNIDYPEYDADTVTAKQMADTSRSVIDKINRLLKTAQEGKILRNGLATAIVGRPNV 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ++S++AIVT++AGTTRD +E V+V GVP+ L+DTAGI T+D VEKIGVE
Sbjct: 236 GKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTEDKVEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS-A 448
RS+ AD++++ + A T+ED L+ + K+ I+++NK D
Sbjct: 296 RSKKALERADLVLLLIDASQALTAEDQALIEATKDKKR--------IVILNKSDLGQKIT 347
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ E K+ S D + T + Q + LE I K+ + + NQRQ L +
Sbjct: 348 TTEMEKLTGS--DVISTSILKEQNLDALEELINKLFFAGIENSNDQIMVTNQRQASLLHK 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K+ L + ++E+ +P+D ID A LG+I+GE +E+++ +F +FC+GK
Sbjct: 406 AKKELEDVIQAVEDGVPVDIAQIDFTGAWDTLGEITGESAPDELITQLFSQFCLGK 461
>gi|418634789|ref|ZP_13197180.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU129]
gi|420190641|ref|ZP_14696582.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM037]
gi|374836331|gb|EHR99918.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU129]
gi|394258574|gb|EJE03454.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM037]
Length = 459
Score = 298 bits (763), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 175/477 (36%), Positives = 274/477 (57%), Gaps = 24/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI +I T +G GA+GIVRLSGP A++I ++K KKK S +H +
Sbjct: 3 FDTITSISTPMG--EGAIGIVRLSGPQAIEIGDILYKG---KKKLSE------VETHTIN 51
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V+EV+ + AP+++TRED++E+ CHG + + R+L + GA +A+
Sbjct: 52 YGHIIDPETNETVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRILELTMTYGARMAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGE+T RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+L
Sbjct: 112 PGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRQSILEIL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + ++++ + +++ LET K+++ GL IVGRPN
Sbjct: 172 AQVEVNIDYPEYDDVEDATTDFLLEQSKRIKEEINRLLETGAQGKIMREGLSTVIVGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIR+T+DIVEKIGV
Sbjct: 232 VGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD+I+ ++ + T +D L I++ +I++INK D
Sbjct: 292 ERSRKALSEADLILFVLNNNEPLTEDDQTLFEVIKNE--------DVIVIINKTDLEQRL 343
Query: 449 S-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+E K+ + T + +GI +LE I + ++ + N R L
Sbjct: 344 DVSELRKMIGDMP-LIQTSMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLLK 402
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++++ + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 403 QARQSIQDAIDAAESGIPMDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459
>gi|195978293|ref|YP_002123537.1| tRNA modification GTPase TrmE [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|195974998|gb|ACG62524.1| tRNA modification GTPase TrmE [Streptococcus equi subsp.
zooepidemicus MGCS10565]
Length = 458
Score = 298 bits (763), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 177/477 (37%), Positives = 269/477 (56%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG A+DI +FK G SH +
Sbjct: 7 FDTIAAISTPLG--EGAIGIVRLSGTKALDIAKSIFK----------GKDLTTVASHTLN 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++ G V+DEV+ MLAP+++TREDV+E+ HG +L+ ++ GA +A+
Sbjct: 55 YGHIIKPSTGEVIDEVMVSVMLAPKTFTREDVIEINTHGGIAVTNDILQLLIKQGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V LI AK+ A A+ + G S L++ R + + L
Sbjct: 115 PGEFTKRAFLNGRIDLTQAEAVMDLIRAKTDKAMSIAIKQLDGSLSQLISDTRQEILNTL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ DK +E L TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTTALLRDKTQEFQALLEQLLRTAKRGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + G+P+ L+DTAGIRETDD+VE+IGV
Sbjct: 235 VGKSSLLNTLLREDKAIVTDIAGTTRDVIEEYVNIKGIPLKLVDTAGIRETDDLVEQIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D LL Q + + I+++NK D
Sbjct: 295 ERSKKALQEADLVLLVLNASEKLTEQDKALLALSQDSNR--------IILLNKTDLDQVI 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
+ + + + Q I +E I ++ H + + N R +
Sbjct: 347 EKDQLP-----EEAIPISVLQNQNIDLIEDRINQLFFDHTGLIEQDATYLSNARHISLIE 401
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++L + + +P+D IDL A LG+I+G+ +E+++ +F +FC+GK
Sbjct: 402 QAVQSLEAVNEGLALGMPVDLLQIDLTRAWEILGEITGDAAPDELITQLFSQFCLGK 458
>gi|322391875|ref|ZP_08065340.1| thiophene and furan oxidation protein ThdF [Streptococcus peroris
ATCC 700780]
gi|321145355|gb|EFX40751.1| thiophene and furan oxidation protein ThdF [Streptococcus peroris
ATCC 700780]
Length = 457
Score = 298 bits (763), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 277/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPQTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTLEFEQLLTNLLKTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN+ + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNSLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D P A
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDL-PEA 344
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
+ +D + + Q I +E I + GL + A + N R
Sbjct: 345 I----ETAELPDDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|417911925|ref|ZP_12555622.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU105]
gi|418621971|ref|ZP_13184733.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU123]
gi|341651682|gb|EGS75479.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU105]
gi|374828041|gb|EHR91888.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU123]
Length = 459
Score = 298 bits (763), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 175/478 (36%), Positives = 274/478 (57%), Gaps = 26/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI +I T +G GA+GIVRLSGP A++I ++K KKK S +H +
Sbjct: 3 FDTITSISTPMG--EGAIGIVRLSGPQAIEIGDILYKG---KKKLSE------VETHTIN 51
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V+EV+ + AP+++TRED++E+ CHG + + R+L + GA +A+
Sbjct: 52 YGHIIDPETNETVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRILELTMTYGARMAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGE+T RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+L
Sbjct: 112 PGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEIL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + ++++ + +++ LET K+++ GL IVGRPN
Sbjct: 172 AQVEVNIDYPEYDDVEDATTDFLLEQSKRIKEEINQLLETGAQGKIMREGLSTVIVGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIR+T+DIVEKIGV
Sbjct: 232 VGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP-- 446
ERS AD+I+ ++ + T +D L I++ +I++INK D
Sbjct: 292 ERSRKALNEADLILFVLNNNEPLTEDDQTLFEVIKNE--------DVIVIINKTDLEQRL 343
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
S +G+ + T + +GI +LE I + ++ + N R L
Sbjct: 344 DVSELREMIGDM--PLIQTSMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLL 401
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++++ + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 402 KQARQSIQDAIDAAESGIPMDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459
>gi|406658230|ref|ZP_11066370.1| tRNA modification GTPase TrmE [Streptococcus iniae 9117]
gi|405578445|gb|EKB52559.1| tRNA modification GTPase TrmE [Streptococcus iniae 9117]
Length = 458
Score = 298 bits (763), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 181/480 (37%), Positives = 272/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A++I +VFK G SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTDALNIAKKVFK----------GKDLASVASHTIN 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG + D V+DEV+ MLAP+++TRE+VVE+ HG +L+ ++ GA +A+
Sbjct: 55 YGHICDPMTQKVIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNDILQLLIKHGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ S R + + L
Sbjct: 115 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSQLINSTRQEILNTL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K H +EN L TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTTALMREKTHEFQTLLENLLRTAKRGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGV
Sbjct: 235 VGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEKIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ +++ + T +D LL + + + I+++NK D +
Sbjct: 295 ERSKKALGEADLVLLVLNSSEPLTEQDKALLELSKGSNR--------IVLLNKTDLPQAI 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKI----VGLHQIPAGGRRWAVNQRQCE 504
E D + + I +E I ++ GL + A + N R
Sbjct: 347 ETEQLP-----EDCIHISVLNNDNIDLIEDRINQLFFDNTGLVEQDA---TYLSNARHIS 398
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + + +P+D +DL LG+I+GE +E+++ +F +FC+GK
Sbjct: 399 LIEKAVESLQAVNEGLALGMPVDLLQVDLTRTWEILGEITGEAAPDELITQLFSQFCLGK 458
>gi|242243258|ref|ZP_04797703.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis W23144]
gi|418412801|ref|ZP_12986052.1| tRNA modification GTPase mnmE [Staphylococcus epidermidis BVS058A4]
gi|418631666|ref|ZP_13194118.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU128]
gi|420164551|ref|ZP_14671279.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM095]
gi|420169300|ref|ZP_14675902.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM087]
gi|420176472|ref|ZP_14682892.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM061]
gi|420205721|ref|ZP_14711244.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM015]
gi|242233207|gb|EES35519.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis W23144]
gi|374834334|gb|EHR97982.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU128]
gi|394231445|gb|EJD77074.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM095]
gi|394231508|gb|EJD77135.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM087]
gi|394241016|gb|EJD86437.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM061]
gi|394269406|gb|EJE13940.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM015]
gi|410883862|gb|EKS31694.1| tRNA modification GTPase mnmE [Staphylococcus epidermidis BVS058A4]
Length = 459
Score = 298 bits (763), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 175/478 (36%), Positives = 274/478 (57%), Gaps = 26/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI +I T +G GA+GIVRLSGP A++I ++K KKK S +H +
Sbjct: 3 FDTITSISTPMG--EGAIGIVRLSGPQAIEIGDILYKG---KKKLSE------VETHTIN 51
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V+EV+ + AP+++TRED++E+ CHG + + R+L + GA +A+
Sbjct: 52 YGHIIDPETNETVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRILELTMTYGARMAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGE+T RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+L
Sbjct: 112 PGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEIL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + ++++ + +++ LET K+++ GL IVGRPN
Sbjct: 172 AQVEVNIDYPEYDDVEDATTDFLLEQSKRIKEEINRLLETGAQGKIMREGLSTVIVGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIR+T+DIVEKIGV
Sbjct: 232 VGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP-- 446
ERS AD+I+ ++ + T +D L I++ +I++INK D
Sbjct: 292 ERSRKALSEADLILFVLNNNEPLTEDDQTLFEVIKNE--------DVIVIINKTDLEQRL 343
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
S +G+ + T + +GI +LE I + ++ + N R L
Sbjct: 344 DVSELREMIGDM--PLIQTSMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLL 401
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++++ + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 402 KQARQSIQDAIDAAESGIPMDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459
>gi|417659194|ref|ZP_12308804.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU045]
gi|329736122|gb|EGG72395.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU045]
Length = 459
Score = 298 bits (763), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 175/478 (36%), Positives = 274/478 (57%), Gaps = 26/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI +I T +G GA+GIVRLSGP A++I ++K KKK S +H +
Sbjct: 3 FDTITSISTPMG--EGAIGIVRLSGPQAIEIGDILYKG---KKKLSE------VETHTIN 51
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V+EV+ + AP+++TRED++E+ CHG + + R+L + GA +A+
Sbjct: 52 YGHIIDPETNETVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRILELTMTYGARMAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGE+T RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+L
Sbjct: 112 PGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEIL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + ++++ + +++ LET K+++ GL IVGRPN
Sbjct: 172 AQVEVNIDYPEYDDVEDATTDFLLEQSKRIKEEINQLLETGAQGKIMREGLSTVIVGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIR+T+DIVEKIGV
Sbjct: 232 VGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP-- 446
ERS AD+I+ ++ + T +D L I++ +I++INK D
Sbjct: 292 ERSRNALSEADLILFVLNNNEPLTEDDQTLFEVIKNE--------DVIVIINKTDLEQRL 343
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
S +G+ + T + +GI +LE I + ++ + N R L
Sbjct: 344 DVSELREMIGDM--PLIQTSMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLL 401
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++++ + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 402 KQARQSIQDAIDAAESGIPMDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459
>gi|322376714|ref|ZP_08051207.1| tRNA modification GTPase TrmE [Streptococcus sp. M334]
gi|321282521|gb|EFX59528.1| tRNA modification GTPase TrmE [Streptococcus sp. M334]
Length = 457
Score = 298 bits (763), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 273/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTESFAIAQKIFK----------GKDLSKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPQTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------ETNRIILLNKTDLPEAI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKI----VGLHQIPAGGRRWAVNQRQCE 504
E D + + Q I +E I + GL + A + N R
Sbjct: 346 ETEELP-----EDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|414158442|ref|ZP_11414736.1| tRNA modification GTPase mnmE [Streptococcus sp. F0441]
gi|410870987|gb|EKS18944.1| tRNA modification GTPase mnmE [Streptococcus sp. F0441]
Length = 457
Score = 298 bits (762), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 273/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + DI ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFDIAQKIFK----------GKDLSKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPQTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTAQRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIR+TDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD++++ ++A + T++D +LL Q T I+++NK D
Sbjct: 294 ERSRKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLP--- 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E + D + + Q I +E I + GL + A + N R
Sbjct: 343 --ETIETSELPEDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|421227183|ref|ZP_15683891.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2072047]
gi|395596010|gb|EJG56234.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2072047]
Length = 457
Score = 298 bits (762), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 181/480 (37%), Positives = 276/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + IV ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIVQKIFK----------GKDLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 346 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|445377381|ref|ZP_21426662.1| tRNA modification GTPase TrmE [Streptococcus thermophilus MTCC
5460]
gi|445391520|ref|ZP_21428382.1| tRNA modification GTPase TrmE [Streptococcus thermophilus MTCC
5461]
gi|444749869|gb|ELW74737.1| tRNA modification GTPase TrmE [Streptococcus thermophilus MTCC
5461]
gi|444749963|gb|ELW74822.1| tRNA modification GTPase TrmE [Streptococcus thermophilus MTCC
5460]
Length = 456
Score = 298 bits (762), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 176/479 (36%), Positives = 275/479 (57%), Gaps = 35/479 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+ I +VFK G SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTDAIAIANKVFK----------GKNLETVDSHTIN 54
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ + ++DEV+ M AP+++TREDVVE+ HG +L+ + +GA +A+P
Sbjct: 55 YGHIVE-NNEIIDEVMVSVMRAPKTFTREDVVEINTHGGVAVTNEILQLLIRSGARMAEP 113
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A++ + G +L+ + R + + L
Sbjct: 114 GEFTKRAFLNGRIDLTQAEAVMDLIRAKTDKAMTVAVSQLDGSLKNLINNTRQEILNTLA 173
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + NLV +K +E+ L TA K+L+ GL AI+GRPNV
Sbjct: 174 QVEVNIDYPEYDDVEEVTTNLVREKTQEFQTLLEHLLATAKRGKILREGLSTAIIGRPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIR+TDD+VEKIGVE
Sbjct: 234 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVE 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL+ Q++ + I+++NK D +
Sbjct: 294 RSKKALEEADLVLLVLNSSEPLTDQDRTLLDISQNSNR--------IILLNKTDLPQAIQ 345
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCEQ 505
E D + + + I +E I ++ GL + A + N R
Sbjct: 346 TEELP-----EDLIPISVLKNENIDKIEDRINQLFFDNAGLVEKDA---TYLSNARHISL 397
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 IEKALESLEAVNQGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 456
>gi|418328449|ref|ZP_12939561.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis
14.1.R1.SE]
gi|365231974|gb|EHM72990.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis
14.1.R1.SE]
Length = 459
Score = 298 bits (762), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 175/478 (36%), Positives = 274/478 (57%), Gaps = 26/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI +I T +G GA+GIVRLSGP A++I ++K KKK S +H +
Sbjct: 3 FDTITSISTPMG--EGAIGIVRLSGPQAIEIGDILYKG---KKKLSE------VETHTIN 51
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V+EV+ + AP+++TRED++E+ CHG + + R+L + GA +A+
Sbjct: 52 YGHIIDPETNETVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRILELTMTYGARMAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGE+T RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+L
Sbjct: 112 PGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRQSILEIL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + ++++ + +++ LET K+++ GL IVGRPN
Sbjct: 172 AQVEVNIDYPEYDDVEDATTDFLLEQSKRIKEEINRLLETGAQGKIMREGLSTVIVGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIR+T+DIVEKIGV
Sbjct: 232 VGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP-- 446
ERS AD+I+ ++ + T +D L I++ +I++INK D
Sbjct: 292 ERSRKALSEADLILFVLNNNEPLTEDDQTLFEVIKNE--------DVIVIINKTDLEQRL 343
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
S +G+ + T + +GI +LE I + ++ + N R L
Sbjct: 344 DVSELREMIGDM--PLIQTSMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLL 401
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++++ + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 402 KQARQSIQDAIDAAESGIPMDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459
>gi|406577036|ref|ZP_11052656.1| tRNA modification GTPase TrmE [Streptococcus sp. GMD6S]
gi|404460396|gb|EKA06662.1| tRNA modification GTPase TrmE [Streptococcus sp. GMD6S]
Length = 457
Score = 298 bits (762), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 272/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPQTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSRKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLQEAI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E D + + + I +E I + GL + A + N R
Sbjct: 346 ETEELP-----EDIIRISVLKNRNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|404329026|ref|ZP_10969474.1| tRNA modification GTPase TrmE [Sporolactobacillus vineae DSM 21990
= SL153]
Length = 461
Score = 298 bits (762), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 181/479 (37%), Positives = 272/479 (56%), Gaps = 31/479 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFK---PVKKKKKKSSGSGSWRPTSHVV 150
TIAAI T +G GA+ IVR+SGP A+ + R+F+ P+ + K +H +
Sbjct: 6 TIAAISTPVG--EGAISIVRMSGPEAIQVGDRLFRGKRPLSQVK------------THTI 51
Query: 151 EYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG ++D +G V+ V+ M P SYTRED+VE+ CHG + R+L L+ +A
Sbjct: 52 HYGKMIDPENGKAVETVMVSVMKKPNSYTREDIVEINCHGGLNSVNRILGLILDQDVRMA 111
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V LI AK+ A D A++ ++G S+LV +R + +++
Sbjct: 112 EPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMDVAMSQMEGRLSTLVRGLRKQLLDI 171
Query: 270 LTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L +E +D+ D+ + ++ D+ A+ ++ L TA K+L+ GL AI+GRP
Sbjct: 172 LAAVEVNIDYPEYDDAEVVTGEILRDRSAAVRNHIDQVLSTARQGKILREGLSTAIIGRP 231
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN +AIVT+I GTTRD+IE V + GVP+ L+DTAGIRET D VEKIG
Sbjct: 232 NVGKSSLLNHLIHENKAIVTDIPGTTRDIIEDYVNIRGVPLKLIDTAGIRETTDEVEKIG 291
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
V RS + AD+I+ ++A + +D L I +TP I+++NK D
Sbjct: 292 VARSRSALANADLILFLLNAHEPLADDDRRLFQAI--------GNTPAIILLNKTDLPQK 343
Query: 448 AS-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRR-WAVNQRQCEQ 505
E N++ + + QG++ LE AI + + A + N R
Sbjct: 344 IEIEEVNRLA-AHRSVIRLSLKNEQGVEKLEDAINTLFFDRNLSANHEEAYVSNVRHIAL 402
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + AL ++ ++ LP+D ID++ A LG+I GE +S+ +++ +F KFC+GK
Sbjct: 403 LKTARSALSDAITAADQGLPVDLAQIDVKRAWDTLGEIIGETVSDSLINELFSKFCLGK 461
>gi|256851670|ref|ZP_05557058.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 27-2-CHN]
gi|260661613|ref|ZP_05862525.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 115-3-CHN]
gi|256615628|gb|EEU20817.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 27-2-CHN]
gi|260547670|gb|EEX23648.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 115-3-CHN]
Length = 460
Score = 298 bits (762), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 182/481 (37%), Positives = 288/481 (59%), Gaps = 35/481 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T IG G + IVRLSG AV I ++FK G + SH +
Sbjct: 7 FDTIAAISTPIG--EGGISIVRLSGEDAVKIANKLFK----------GKDLSKVASHTIN 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D VVDEV+ +LAP+++T+ED+VE+ CHG V ++L+ L+ GA +A+
Sbjct: 55 YGHIIDPETSKVVDEVMVSVLLAPKTFTKEDMVEINCHGGIVVTNKILQLLLKHGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
GEFT RAF+NGR+DL+QAE+V ++ AK+ A A+ ++GG + ++R + ++ L
Sbjct: 115 AGEFTKRAFVNGRIDLTQAESVMDIVRAKTDKARQVAMNQLEGGLLDKIRNMRQEILDTL 174
Query: 271 TEIEARLDFDDEMPPLNLNLVM-DKIHAMSQDVENA----LETANYDKLLQSGLQIAIVG 325
+E +D+ P + + V ++ S+ V A L+TAN K++++GL AIVG
Sbjct: 175 ANVEVNIDY----PEYDADQVTATQMQETSKKVIEAINRLLKTANQGKIMRNGLATAIVG 230
Query: 326 RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEK 385
RPNVGKSSLLN ++ ++AIVT++AGTTRD +E V++ GVP+ L+DTAGI T+D VEK
Sbjct: 231 RPNVGKSSLLNYLTQDDKAIVTDVAGTTRDTLEEYVSIRGVPLKLIDTAGIHHTEDKVEK 290
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445
IGVERS+ AD++++ ++A + T+ED +L++ ++ K+ I+V+NK D
Sbjct: 291 IGVERSKKAIEQADLVLLLLNASEALTTEDEKLIDYTKNKKR--------IVVLNKADLG 342
Query: 446 PSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV--GLHQIPAGGRRWAVNQRQC 503
+ E KV + V T + + + +LE AI K+ G+H + NQRQ
Sbjct: 343 IKLNKEDLKVQTQAS-IVVTSILKEENLNELEEAISKLFFSGIHN--SNDEVLVTNQRQA 399
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
L + K+ L + +++ ++PLD ID A LG+I+G+ +E+++ +F +FC+G
Sbjct: 400 GLLEKAKDQLTDVVDAVDNDVPLDIAQIDFTGAWDTLGEITGDSAPDELITQLFSQFCLG 459
Query: 564 K 564
K
Sbjct: 460 K 460
>gi|313890071|ref|ZP_07823706.1| tRNA modification GTPase TrmE [Streptococcus pseudoporcinus SPIN
20026]
gi|416852297|ref|ZP_11909442.1| tRNA modification GTPase TrmE [Streptococcus pseudoporcinus LQ
940-04]
gi|313121432|gb|EFR44536.1| tRNA modification GTPase TrmE [Streptococcus pseudoporcinus SPIN
20026]
gi|356739786|gb|EHI65018.1| tRNA modification GTPase TrmE [Streptococcus pseudoporcinus LQ
940-04]
Length = 458
Score = 298 bits (762), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 176/480 (36%), Positives = 275/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+ I VFK G SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTDALKIANTVFK----------GKNLHEVASHTIN 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG +++ + ++DEV+ MLAP+++TRE+V+E+ HG +L+ ++ GA +A+
Sbjct: 55 YGHIINPDNQEILDEVMVTVMLAPKTFTRENVIEINTHGGIAVTNEILQLLIKQGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 115 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSQLINNTRQEILNTL 174
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +EN L TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTTALLREKTQQFQALLENLLRTAKRGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGV
Sbjct: 235 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ V AD++++ ++A + T++D LL Q + ++++NK D
Sbjct: 295 ERSKKVLKEADLVLLVLNASEPLTTQDRLLLELSQETNR--------LILLNKTDLPEKI 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
+ +D V + + I +E I ++ GL + A + N R
Sbjct: 347 ETDQLP-----SDLVPISVLQNKNIDMIEDRINQLFFDNAGLVEQDA---TYLSNARHIS 398
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + +E ++P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 399 LIEQALQSLQAVNDGLEMDMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458
>gi|383939144|ref|ZP_09992331.1| tRNA modification GTPase TrmE [Streptococcus pseudopneumoniae
SK674]
gi|418972471|ref|ZP_13520596.1| tRNA modification GTPase TrmE [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383351988|gb|EID29742.1| tRNA modification GTPase TrmE [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383713990|gb|EID70009.1| tRNA modification GTPase TrmE [Streptococcus pseudopneumoniae
SK674]
Length = 457
Score = 298 bits (762), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 275/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTESFAIAQKIFK----------GKYLSQVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPQNGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ ++R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------ETNRIILLNKTDLP--- 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E + D + + Q I +E I + GL + A + N R
Sbjct: 343 --EVIETSELPEDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|419780106|ref|ZP_14305956.1| tRNA modification GTPase TrmE [Streptococcus oralis SK100]
gi|383185265|gb|EIC77761.1| tRNA modification GTPase TrmE [Streptococcus oralis SK100]
Length = 471
Score = 298 bits (762), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 274/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 20 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSKVASHTLN 67
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 68 YGHIIDPQTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 127
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 128 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 187
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 188 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 247
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 248 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 307
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD++++ ++A + T++D +LL+ Q T I+++NK D P A
Sbjct: 308 ERSRKALKEADLVLLVLNASEPLTAQDRQLLDISQ--------DTNRIILLNKTDL-PEA 358
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
+ D + + Q I +E I + GL + A + N R
Sbjct: 359 I----ETSELPEDLIRISVLKNQNIDKIEERINDLFFENDGLVEQDA---TYLSNARHIS 411
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 412 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 471
>gi|222153198|ref|YP_002562375.1| tRNA modification GTPase TrmE [Streptococcus uberis 0140J]
gi|222114011|emb|CAR42339.1| tRNA modification GTPase TrmE [Streptococcus uberis 0140J]
Length = 458
Score = 297 bits (761), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 183/480 (38%), Positives = 276/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+ I +VFK G SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTEALAIAKKVFK----------GKDLEAVASHTIN 54
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG +LD N ++DEV+ M P+++TREDVVE+ HG +L+ ++ GA +A+
Sbjct: 55 YGHILDPEKNEILDEVMVTVMKEPKTFTREDVVEINTHGGIAVTNEILQLLIKNGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G L+ S R + + L
Sbjct: 115 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLKELINSTRQEILNTL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +E L TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTTALMREKTQEFQNLLEQLLRTAKRGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+IAGTTRDVIE V + GVP+ L+DTAGIR+TDDIVEKIGV
Sbjct: 235 VGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D LL+ S ES+ I+++NK D P A
Sbjct: 295 ERSKKALNEADLVLLVLNASESLTEQDRVLLDL------SKESNR--IILLNKTDL-PQA 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +++ D++ + + I +E I + GL + A + N R
Sbjct: 346 I-EKDQIP---EDYIEISVLKNENIDQIEDRINDLFFENAGLVEQDA---TYLSNARHIS 398
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 399 LIEQAVQSLQAVNEGLEMGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458
>gi|149006299|ref|ZP_01830011.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP18-BS74]
gi|307127434|ref|YP_003879465.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 670-6B]
gi|417676771|ref|ZP_12326182.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17545]
gi|418096137|ref|ZP_12733252.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA16531]
gi|418132858|ref|ZP_12769731.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA11304]
gi|418155052|ref|ZP_12791783.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA16242]
gi|418225443|ref|ZP_12852072.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae NP112]
gi|419466459|ref|ZP_14006342.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA05248]
gi|419512410|ref|ZP_14052044.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA05578]
gi|419516689|ref|ZP_14056307.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA02506]
gi|147762076|gb|EDK69038.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP18-BS74]
gi|306484496|gb|ADM91365.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 670-6B]
gi|332075631|gb|EGI86099.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17545]
gi|353771124|gb|EHD51635.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA16531]
gi|353806814|gb|EHD87087.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA11304]
gi|353823344|gb|EHE03519.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA16242]
gi|353882751|gb|EHE62562.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae NP112]
gi|379544582|gb|EHZ09726.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA05248]
gi|379636880|gb|EIA01438.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA05578]
gi|379640692|gb|EIA05231.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA02506]
Length = 457
Score = 297 bits (761), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 277/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + IV ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIVQKIFK----------GKDLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ ++R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ A+++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEANLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 346 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|417647473|ref|ZP_12297311.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU144]
gi|329724170|gb|EGG60688.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU144]
Length = 459
Score = 297 bits (761), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 175/478 (36%), Positives = 273/478 (57%), Gaps = 26/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI +I T +G GA+GIVRLSGP A++I ++K KKK S +H +
Sbjct: 3 FDTITSISTPMG--EGAIGIVRLSGPQAIEIGDILYKG---KKKLSE------VETHTIN 51
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V+EV+ + AP+++TRED+ E+ CHG + + R+L + GA +A+
Sbjct: 52 YGHIIDPETNETVEEVMVSVLRAPKTFTREDITEINCHGGILTINRILELTMTYGARMAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGE+T RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+L
Sbjct: 112 PGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEIL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + ++++ + +++ LET K+++ GL IVGRPN
Sbjct: 172 AQVEVNIDYPEYDDVEDATTDFLLEQSKRIKEEINQLLETGAQGKIMREGLSTVIVGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIR+T+DIVEKIGV
Sbjct: 232 VGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP-- 446
ERS AD+I+ ++ + T +D L I++ +I++INK D
Sbjct: 292 ERSRKALSEADLILFVLNNNEPLTEDDQTLFEVIKNE--------DVIVIINKTDLEQRL 343
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
S +G+ + T + +GI +LE I + ++ + N R L
Sbjct: 344 DVSELREMIGDM--PLIQTSMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLL 401
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++++ + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 402 KQARQSIQDAIDAAESGIPMDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459
>gi|166032899|ref|ZP_02235728.1| hypothetical protein DORFOR_02620 [Dorea formicigenerans ATCC
27755]
gi|166027256|gb|EDR46013.1| tRNA modification GTPase TrmE [Dorea formicigenerans ATCC 27755]
Length = 470
Score = 297 bits (761), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 180/485 (37%), Positives = 278/485 (57%), Gaps = 35/485 (7%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++ +GIVR+SG AV+I R++K +KK S +PT H + YG
Sbjct: 7 TIAAISTAMSNS--GIGIVRMSGEEAVEIAERIYKGKNEKKL------SKQPT-HTIHYG 57
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
++D + +DEVL + M P SYT ED VE+ CHG +RR+L ++ GA A PGE
Sbjct: 58 YIVDGE-DTIDEVLVMLMRGPHSYTGEDTVEINCHGGVYVVRRILETVIKYGARPADPGE 116
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNG++DLSQAE V LIS+K+ A ++++ ++G + +R + + I
Sbjct: 117 FTKRAFLNGKMDLSQAEAVGDLISSKNEYALRSSVSQLKGNIKKEIQKIREEILYHTAFI 176
Query: 274 EARLDFDDEMPPLNLNLVMDKIHAMSQD----VENALETANYDKLLQSGLQIAIVGRPNV 329
E LD + ++++ +K+ + +D +++ L T + ++++ G++ IVG+PN
Sbjct: 177 ETALD---DPEHISVDGYGEKLEVVVEDHMKSLKHLLSTCDDGRMIKEGIKTVIVGKPNA 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ERAIVTEIAGTTRDV+E + + G+ + ++DTAGIR+T+D+VEKIGV+
Sbjct: 234 GKSSLLNVLLGEERAIVTEIAGTTRDVLEEHMNLQGISLNIVDTAGIRDTEDVVEKIGVD 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
R++ A AD+I+ + A D +++ I K I+++NK D
Sbjct: 294 RAKENAKDADLIMYVIDASAPLDENDDDIMRMIYGRK--------AIILLNKADLNTILG 345
Query: 450 NEWNKVGNSFNDHVFTC----------AVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVN 499
+ K S + + +C A GQGI +LE + ++ +I + N
Sbjct: 346 KDEIKKKYSEINQLESCDIFPAIIEISAKNGQGISELEQTLKEMFFEGKISFNDEIYITN 405
Query: 500 QRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGK 559
R L EAL ++K SI+ +P DF++IDL DA LG I+GE I E++++ IF K
Sbjct: 406 VRHKTALNNAYEALKKVKESIDMGMPEDFYSIDLMDAYEELGSITGETIGEDLVNEIFSK 465
Query: 560 FCIGK 564
FC+GK
Sbjct: 466 FCMGK 470
>gi|419814462|ref|ZP_14339248.1| tRNA modification GTPase TrmE, partial [Streptococcus sp. GMD2S]
gi|404471806|gb|EKA16280.1| tRNA modification GTPase TrmE, partial [Streptococcus sp. GMD2S]
Length = 461
Score = 297 bits (761), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 275/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 10 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSKVASHTLN 57
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 58 YGHIIDPQTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 117
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 118 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 177
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 178 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 237
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 238 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 297
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL+ Q T I+++NK D P A
Sbjct: 298 ERSKKALKEADLVLLVLNASEPLTAQDRQLLDISQ--------DTNRIILLNKTDL-PEA 348
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
+ D + + Q I +E I + GL + A + N R
Sbjct: 349 I----ETSELPEDLIRISVLKNQNIDKIEERINDLFFENAGLVEQDA---TYLSNARHIS 401
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 402 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 461
>gi|406586534|ref|ZP_11061463.1| tRNA modification GTPase TrmE [Streptococcus sp. GMD1S]
gi|404473992|gb|EKA18314.1| tRNA modification GTPase TrmE [Streptococcus sp. GMD1S]
Length = 457
Score = 297 bits (761), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 275/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPQTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL+ Q T I+++NK D P A
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLDISQ--------DTNRIILLNKTDL-PEA 344
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
+ D + + Q I +E I + GL + A + N R
Sbjct: 345 I----ETSELPEDLIRISVLKNQNIDKIEERINDLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|153811977|ref|ZP_01964645.1| hypothetical protein RUMOBE_02370 [Ruminococcus obeum ATCC 29174]
gi|149831876|gb|EDM86962.1| tRNA modification GTPase TrmE [Ruminococcus obeum ATCC 29174]
Length = 486
Score = 297 bits (761), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 179/478 (37%), Positives = 276/478 (57%), Gaps = 29/478 (6%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
+TIAAI T++ +GIVR+SG A+D++ ++++ KK + SH + Y
Sbjct: 32 ATIAAISTAM--SASGIGIVRISGENAMDVIAKIYRSKNGKKDIRT------VVSHTIHY 83
Query: 153 GVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
G + D VVDEVL + M P +YT ED VE+ CHG ++RVL L+ GA +A+PG
Sbjct: 84 GFIYDGE-EVVDEVLVMIMRGPHTYTGEDTVEIDCHGGVYAMKRVLETVLKNGAVIAEPG 142
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGRLDLSQAE V +I AK+ A +++ ++G V +RA+ + +
Sbjct: 143 EFTKRAFLNGRLDLSQAEAVMDVIQAKNSMALKSSVEQLKGSVQRAVKEIRARLLHQIAY 202
Query: 273 IEARLD----FDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
IE LD FD P L +++K S+++ L+TA+ +++Q G++ I+G+PN
Sbjct: 203 IETALDDPEHFDLTDYPQELQKIVEK---ESENISELLKTADDGRMIQEGIKTVILGKPN 259
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
GKSSLLN +RAIVTEIAGTTRD++E +++ G+ + ++DTAGIRET+D+VEKIGV
Sbjct: 260 AGKSSLLNFLVGEDRAIVTEIAGTTRDILEEYISLNGITLRVIDTAGIRETEDVVEKIGV 319
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
+++ +A AD+I+ V + D E++ + S +KS I++ NK D +
Sbjct: 320 GKAKQMAENADLILYVVDSSLPLDDNDREIM-ELLSGRKS-------IVIYNKTDLEAAV 371
Query: 449 SNEW--NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
E K G+ + V GI LE I ++ ++ + N R L
Sbjct: 372 DIEELKEKTGSPV---IPVSVVEETGISQLEDEIKRMFFHGELSFNDEVYITNARHKAAL 428
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+KE+L + SI + DF++IDL +A +LG+I GE + E++++ IF KFC+GK
Sbjct: 429 EESKESLKLVMDSIAMGMSEDFFSIDLMNAYESLGRIVGESVGEDLVNEIFSKFCVGK 486
>gi|419706980|ref|ZP_14234486.1| tRNA modification GTPase mnmE [Streptococcus salivarius PS4]
gi|383283220|gb|EIC81178.1| tRNA modification GTPase mnmE [Streptococcus salivarius PS4]
Length = 456
Score = 297 bits (761), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 178/479 (37%), Positives = 278/479 (58%), Gaps = 35/479 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+ I +VFK G SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTDAIAIANKVFK----------GKNLETVYSHTIN 54
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ + +++DEV+ M AP+++TREDVVE+ HG +L+ + +GA +A+P
Sbjct: 55 YGHIVE-NDDIIDEVMVSVMRAPKTFTREDVVEINTHGGVAVTNEILQLLIRSGARMAEP 113
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A++ + G +L+ + R + + L
Sbjct: 114 GEFTKRAFLNGRVDLTQAEAVMDLIRAKTDKAMAVAVSQLDGSLKNLINNTRQEILNTLA 173
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + NLV +K +EN L TA K+L+ GL AI+GRPNV
Sbjct: 174 QVEVNIDYPEYDDVEEVTTNLVREKTKEFQALLENLLATAKRGKILREGLSTAIIGRPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIR+TDD+VEKIGVE
Sbjct: 234 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVE 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL+ Q++ + I+++NK D P A
Sbjct: 294 RSKKALEEADLVLLVLNSSEPLTEQDRTLLDISQNSNR--------IILLNKADL-PQAI 344
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCEQ 505
++ D + + + I +E I ++ GL + A + N R
Sbjct: 345 ----QLEELPEDIIPISVLKNENIDKIEDRINQLFFDNAGLVEKDA---TYLSNARHISL 397
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 IEKALESLEAVNQGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 456
>gi|387761272|ref|YP_006068249.1| tRNA modification GTPase TrmE [Streptococcus salivarius 57.I]
gi|339292039|gb|AEJ53386.1| tRNA modification GTPase TrmE [Streptococcus salivarius 57.I]
Length = 456
Score = 297 bits (761), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 178/479 (37%), Positives = 273/479 (56%), Gaps = 35/479 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG AV I +VFK G SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGSDAVAIANKVFK----------GKNLETVASHTIN 54
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ + +DEV+ M AP+++TREDVVE+ HG +L+ + +GA +A+P
Sbjct: 55 YGHIVE-NDETIDEVMVSVMRAPKTFTREDVVEINTHGGVAVTNEILQLLIRSGARMAEP 113
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A++ + G L+ + R + + L
Sbjct: 114 GEFTKRAFLNGRVDLTQAEAVMDLIRAKTDKAMAVAVSQLDGSLKDLINNTRQEILNTLA 173
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + NLV +K +EN L TA K+L+ GL AI+GRPNV
Sbjct: 174 QVEVNIDYPEYDDVEEVTTNLVREKTQEFQALLENLLATAKRGKILREGLSTAIIGRPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIR+TDD+VEKIGVE
Sbjct: 234 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVE 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL Q++ + I+++NK D + +
Sbjct: 294 RSKKALEEADLVLLVLNSSEPLTEQDRTLLEVSQNSNR--------IILLNKTDLSQAIQ 345
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKI----VGLHQIPAGGRRWAVNQRQCEQ 505
E D + + + I +E I ++ GL + A + N R
Sbjct: 346 MEELP-----EDVIPISVLKNENIDKIEDRINQLFFDNAGLVEKDA---TYLSNARHISL 397
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 IEKALESLEAVNQGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 456
>gi|297205279|ref|ZP_06922675.1| tRNA modification GTPase TrmE [Lactobacillus jensenii JV-V16]
gi|297149857|gb|EFH30154.1| tRNA modification GTPase TrmE [Lactobacillus jensenii JV-V16]
Length = 483
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 182/481 (37%), Positives = 288/481 (59%), Gaps = 35/481 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T IG G + IVRLSG AV I ++FK G + SH +
Sbjct: 30 FDTIAAISTPIG--EGGISIVRLSGEDAVKIANKLFK----------GKDLSKVASHTIN 77
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D VVDEV+ +LAP+++T+ED+VE+ CHG V ++L+ L+ GA +A+
Sbjct: 78 YGHIIDPETSKVVDEVMVSVLLAPKTFTKEDMVEINCHGGIVVTNKILQLLLKHGARMAE 137
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
GEFT RAF+NGR+DL+QAE+V ++ AK+ A A+ ++GG + ++R + ++ L
Sbjct: 138 AGEFTKRAFVNGRIDLTQAESVMDIVRAKTDKARQVAMNQLEGGLLDKIRNMRQEILDTL 197
Query: 271 TEIEARLDFDDEMPPLNLNLVM-DKIHAMSQDVENA----LETANYDKLLQSGLQIAIVG 325
+E +D+ P + + V ++ S+ V A L+TAN K++++GL AIVG
Sbjct: 198 ANVEVNIDY----PEYDADQVTATQMQETSKKVIEAINRLLKTANQGKIMRNGLATAIVG 253
Query: 326 RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEK 385
RPNVGKSSLLN ++ ++AIVT++AGTTRD +E V++ GVP+ L+DTAGI T+D VEK
Sbjct: 254 RPNVGKSSLLNYLTQDDKAIVTDVAGTTRDTLEEYVSIRGVPLKLIDTAGIHHTEDKVEK 313
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445
IGVERS+ AD++++ ++A + T+ED +L++ ++ K+ I+V+NK D
Sbjct: 314 IGVERSKKAIEQADLVLLLLNASEALTTEDEKLIDYTKNKKR--------IVVLNKADLG 365
Query: 446 PSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV--GLHQIPAGGRRWAVNQRQC 503
+ E KV + V T + + + +LE AI K+ G+H + NQRQ
Sbjct: 366 IKLNKEDLKVQTQAS-IVVTSILKEENLNELEEAISKLFFSGIHN--SNDEVLVTNQRQA 422
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
L + K+ L + +++ ++PLD ID A LG+I+G+ +E+++ +F +FC+G
Sbjct: 423 GLLEKAKDQLTDVVDAVDNDVPLDIAQIDFTGAWDTLGEITGDSAPDELITQLFSQFCLG 482
Query: 564 K 564
K
Sbjct: 483 K 483
>gi|315613122|ref|ZP_07888032.1| tRNA modification GTPase TrmE [Streptococcus sanguinis ATCC 49296]
gi|315314684|gb|EFU62726.1| tRNA modification GTPase TrmE [Streptococcus sanguinis ATCC 49296]
Length = 471
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 274/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 20 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSKVASHTLN 67
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 68 YGHIIDPQTGKVMDEVMVGVMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 127
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 128 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 187
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 188 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 247
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIR+TDDIVE+IGV
Sbjct: 248 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGV 307
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A D T++D +LL Q T I+++NK D P A
Sbjct: 308 ERSKKALKEADLVLLVLNASDPLTAQDRQLLEISQ--------DTNRIILLNKTDL-PEA 358
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKI----VGLHQIPAGGRRWAVNQRQCE 504
+ D + + Q I +E I + GL + A + N R
Sbjct: 359 I----ETSELPEDVIRISVLKNQNIDKIEDRINNLFFENAGLVEQDA---TYLSNARHIS 411
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 412 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 471
>gi|289167974|ref|YP_003446243.1| tRNA modification GTPase TrmE [Streptococcus mitis B6]
gi|288907541|emb|CBJ22378.1| tRNA modification GTPase TrmE [Streptococcus mitis B6]
Length = 457
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 273/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTESFSIAQKIFK----------GKDLSQVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPQTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q T I+++NK D P A
Sbjct: 294 ERSKKALKEADLVLLVLNASESLTVQDRQLLEISQ--------ETNRIILLNKTDL-PEA 344
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
+ D + + Q I +E I + GL + A + N R
Sbjct: 345 I----ETSELPEDLIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|420200875|ref|ZP_14706514.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM031]
gi|394267471|gb|EJE12061.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM031]
Length = 459
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 172/478 (35%), Positives = 272/478 (56%), Gaps = 26/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI +I T +G GA+GIVRLSGP A++I ++K KK + + H +
Sbjct: 3 FDTITSISTPMG--EGAIGIVRLSGPQAIEIGDILYKGTKKLSEVET---------HTIN 51
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D V+EV+ + AP+++TRED++E+ CHG + + R+L + GA +A+
Sbjct: 52 YGHIIDPETDETVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRILELTMTYGARMAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGE+T RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+L
Sbjct: 112 PGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEIL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + ++++ + +++ LET K+++ GL IVGRPN
Sbjct: 172 AQVEVNIDYPEYDDVEDATTDFLLEQSKRIKEEINRLLETGAQGKIMREGLSTVIVGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIR+T+DIVEKIGV
Sbjct: 232 VGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP-- 446
ERS AD+I+ ++ + T +D L I++ +I++INK D
Sbjct: 292 ERSRKALSEADLILFVLNNNEPLTEDDQTLFEVIKNE--------DVIVIINKTDLEQRL 343
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
S +G+ + T + +GI +LE I + ++ + N R L
Sbjct: 344 DVSELREMIGDM--PLIQTSMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLL 401
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++++ + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 402 KQARQSIQDAIDAAESGIPMDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459
>gi|423137803|ref|ZP_17125446.1| tRNA modification GTPase mnmE [Fusobacterium nucleatum subsp.
animalis F0419]
gi|371959272|gb|EHO76964.1| tRNA modification GTPase mnmE [Fusobacterium nucleatum subsp.
animalis F0419]
Length = 455
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 174/480 (36%), Positives = 284/480 (59%), Gaps = 34/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T G G + IVR+SG +++I+ ++F+P K KK+S ++ +
Sbjct: 3 LDTIAAISTPRG--EGGISIVRMSGQDSLNILEKIFRP---KNKKASELKNYS-----IN 52
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG ++D ++VDEVL M AP +YTRED+VE+ CHG + +VL L+ GA +A+
Sbjct: 53 YGHIIDNE-HIVDEVLVSIMKAPNTYTREDIVEINCHGGFLVTEKVLEVVLKNGARIAEI 111
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V +I K+ + +L ++G +T+++ ++L
Sbjct: 112 GEFTKRAFLNGRIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKITTIKKSVLDLAA 171
Query: 272 EIEARLDF-----DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
I LD+ DD +P NLV + + S ++++ + + + K+++ G++ AI+G+
Sbjct: 172 HINVVLDYPEEGIDDPVPE---NLVKN-LKKASAEIKDLVSSYDKGKIIKDGIKTAIIGK 227
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSS+LN+ + +RAIVT I GTTRD+IE + + G+P+ L+DTAGIR TDDI+E I
Sbjct: 228 PNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIIENI 287
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVE+S+ + AD+I+ + ED + + I ++K +I ++NKID
Sbjct: 288 GVEKSKELINSADLILYVIDTSRKIDEEDFRIYDIINTDK--------VIGILNKIDIKK 339
Query: 447 SAS-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCE 504
+++ K+ V A++ GI +LE I K + I ++ + N R
Sbjct: 340 DIDLSKFPKI----EKWVEISALSKIGIDNLENEIYKFIMNENIEDSSQKLVITNVRHKS 395
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L +T EAL+ + +I++ LP+D +D++DA +L +++GE SE++L +IF FC+GK
Sbjct: 396 ALEKTNEALLNIIETIDKGLPMDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455
>gi|295425821|ref|ZP_06818502.1| tRNA modification GTPase TrmE [Lactobacillus amylolyticus DSM
11664]
gi|295064514|gb|EFG55441.1| tRNA modification GTPase TrmE [Lactobacillus amylolyticus DSM
11664]
Length = 461
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 175/481 (36%), Positives = 273/481 (56%), Gaps = 35/481 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T IG G + IVR+SG AV I +VFK G+ + +H +
Sbjct: 8 FDTIAAISTPIG--EGGISIVRMSGEDAVKIANQVFK----------GADLTKVPTHTIH 55
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N +DE + + AP+++TRED++E+ CHG V VL+ L GA +A
Sbjct: 56 YGHIIDPDTNKTIDEAMVTVLRAPKTFTREDIIEINCHGGIVVTNHVLQLLLAHGARMAD 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V ++ AK+ A A+ + GG + ++R + ++ L
Sbjct: 116 PGEFTKRAFVNGRIDLTQAESVMDIVRAKTDKARQVAVGQLAGGLMHKIRAMRKEILDTL 175
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMS-----QDVENALETANYDKLLQSGLQIAIVG 325
+E +D+ P + + V K A + Q ++ L+TA +L++GL AIVG
Sbjct: 176 ANVEVNIDY----PEYDADQVTAKQMADTSKNVIQKIDRLLKTAQEGTILRNGLATAIVG 231
Query: 326 RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEK 385
RPNVGKSSLLN ++S++AIVT++AGTTRD +E ++V VP+ L+DTAGI TDD VEK
Sbjct: 232 RPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYISVNSVPLKLIDTAGIHHTDDKVEK 291
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445
IGVERS+ AD++++ + T ED LL ++ K+ I+++NK+D
Sbjct: 292 IGVERSQKALKQADLVLLLLDGSQELTDEDKTLLKETENKKR--------IIILNKMDLG 343
Query: 446 P--SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQC 503
+A + G+ V T + + +LE I K+ + + NQRQ
Sbjct: 344 QKLTAKGMHDSTGSEV---VSTSILKETNLDELEDLIKKMFFSGITNSNDQIMVTNQRQA 400
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
L + K+ L + ++E+ +P+D ID A LG+I+G+ +E+++ +F +FC+G
Sbjct: 401 GLLAKAKKQLQDVVKAVEDGVPVDIAQIDFNGAWDTLGEITGDSAPDELVNALFSQFCLG 460
Query: 564 K 564
K
Sbjct: 461 K 461
>gi|417924330|ref|ZP_12567776.1| tRNA modification GTPase TrmE [Streptococcus mitis SK569]
gi|418968124|ref|ZP_13519751.1| tRNA modification GTPase TrmE [Streptococcus mitis SK616]
gi|342836117|gb|EGU70340.1| tRNA modification GTPase TrmE [Streptococcus mitis SK569]
gi|383341250|gb|EID19514.1| tRNA modification GTPase TrmE [Streptococcus mitis SK616]
Length = 457
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 182/480 (37%), Positives = 277/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFTIAQKIFK----------GKDLSQVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPQTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D P A
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDLQLLEISQ--------DTNRIILLNKTDL-PEA 344
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 345 I-ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|421894667|ref|ZP_16325153.1| tRNA modification GTPase TrmE [Pediococcus pentosaceus IE-3]
gi|385272426|emb|CCG90525.1| tRNA modification GTPase TrmE [Pediococcus pentosaceus IE-3]
Length = 464
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 184/481 (38%), Positives = 271/481 (56%), Gaps = 32/481 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG + I+R+SG A+ ++++ G + SH
Sbjct: 8 FDTIAAIST----PPGEGGISIIRISGVDALKTASQIYR----------GKDLNKVNSHT 53
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D +GN VDEV+ M AP +YT+ED+VE+ CHG V R+L+ L A L
Sbjct: 54 INYGHIIDPENGNEVDEVMVSVMRAPHTYTKEDIVEINCHGGIVATNRILQIILGLDARL 113
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQAE V LI AK+ + AL + G S L+T++R ++
Sbjct: 114 AKPGEFTERAFLNGRIDLSQAEAVMDLIRAKTDQSMKVALDQLDGNLSHLITNLRQNILD 173
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L ++E +D+ D++ + L+ +K + ++ L TA K+L+ GL AI+G
Sbjct: 174 VLAQVEVNIDYPEYDDVETMTARLLKEKAIEVKVKIQQLLSTAKQGKVLRDGLATAIIGH 233
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSS+LN ++AIVT++AGTTRDVIE V V GVP+ L+DTAGI ET+D VEKI
Sbjct: 234 PNVGKSSILNHLLHEDKAIVTDVAGTTRDVIEEYVNVQGVPLKLVDTAGIHETEDKVEKI 293
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GV+RS L AD++I+ + + ED ELL ++ I+V+NK D
Sbjct: 294 GVDRSRKALLQADLVILVLDSSVPLRDEDRELLRETNHMQR--------IVVLNKSDLEV 345
Query: 447 SASNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQC 503
+ N++ +D + + AV+ G +DLE I + I V N R
Sbjct: 346 KIN--LNELQEYVDDKEIIKSSAVSPLGTKDLEDRIAAMFFAGSIENTSNNIMVTNARHI 403
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
L + + AL + IE +P+D ID+ A LG+I+G+ +E+L +F +FC+G
Sbjct: 404 GLLKQAETALDAVLEGIETGMPVDLVQIDMTRAWDLLGEITGDSYQDELLDQLFSQFCLG 463
Query: 564 K 564
K
Sbjct: 464 K 464
>gi|167629165|ref|YP_001679664.1| tRNA modification GTPase trme [Heliobacterium modesticaldum Ice1]
gi|205829157|sp|B0TAB6.1|MNME_HELMI RecName: Full=tRNA modification GTPase MnmE
gi|167591905|gb|ABZ83653.1| tRNA modification GTPase trme [Heliobacterium modesticaldum Ice1]
Length = 466
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 190/483 (39%), Positives = 281/483 (58%), Gaps = 33/483 (6%)
Query: 94 TIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAA+ T PPG +GIVR+SGP A D++ VF+P + G W SH +
Sbjct: 5 TIAAVAT----PPGEGGIGIVRVSGPGARDVLKAVFRP-----RYGRGVDDW--ASHTLH 53
Query: 152 YGVVL--DRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
G ++ D H V+DE L M+APR++T EDVVE CHG V +R L A L AGA LA
Sbjct: 54 LGTIIHPDDH-RVIDEALVAWMVAPRTFTTEDVVEFHCHGGSVPVRETLGAVLRAGARLA 112
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFL GRLDL+QAE + ++I AK+ AA++ ++G S + VR + L
Sbjct: 113 EPGEFTRRAFLGGRLDLAQAEAIIEVIRAKTRDGLGAAVSQLEGQLSRRIRKVRDDLLAL 172
Query: 270 LTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
L +EA +DF ++++P + + + + + + + LE + ++L+ G + IVGRPN
Sbjct: 173 LAHLEAMIDFPEEDLPDIGSERICTDLMQIQRQIGDMLERSRTGRVLREGWRTVIVGRPN 232
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSL+NA +RAIVTEI GTTRD IE + + G+P+ ++DTAGIRET+D+VE+IGV
Sbjct: 233 VGKSSLMNALLDEQRAIVTEIPGTTRDAIEEYIDLGGIPLRIVDTAGIRETEDVVERIGV 292
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
E++ AD+ ++ + D T+ED LL + + P ++++NK D A
Sbjct: 293 EKTREYLEKADLALVVLDGSDSLTAEDETLLLSL--------AGRPAVVLVNKSDLAVRR 344
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQ-R 501
+E ++ + + + A G G+++L I ++V GL P GGR V Q R
Sbjct: 345 LDE-KRLRSLVGEMPIISVSAKEGWGLKELTELIRRMVYGDDGLGYAPDGGRLALVTQAR 403
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
E L R+ L + ++ DF TIDL+ A ALG+I+G+ + E++L IF FC
Sbjct: 404 HREALERSYAHLRQALDAVAHGASPDFLTIDLKAAWEALGEITGDTVGEDILDKIFSSFC 463
Query: 562 IGK 564
IGK
Sbjct: 464 IGK 466
>gi|227543714|ref|ZP_03973763.1| tRNA modification GTP-binding protein TrmE [Lactobacillus reuteri
CF48-3A]
gi|338203502|ref|YP_004649647.1| tRNA modification GTPase TrmE [Lactobacillus reuteri SD2112]
gi|227186282|gb|EEI66353.1| tRNA modification GTP-binding protein TrmE [Lactobacillus reuteri
CF48-3A]
gi|336448742|gb|AEI57357.1| tRNA modification GTPase TrmE [Lactobacillus reuteri SD2112]
Length = 477
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 177/476 (37%), Positives = 268/476 (56%), Gaps = 24/476 (5%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
TIAAI T +G G + I+R+SG AV + R++K G + +H + Y
Sbjct: 22 DTIAAISTPVG--EGGISIIRISGDDAVKVAQRIYK----------GKDLAKVATHTINY 69
Query: 153 GVVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
G ++D + VDEV+ M AP +YTREDV+E+ CHG + R+L+ L GA +A+P
Sbjct: 70 GHIVDPDTDQEVDEVMVSVMRAPHTYTREDVIEINCHGGLLATNRILQLVLSFGARMAEP 129
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGRLDLSQ+E V LI AK+ + AL + G S L+ ++R +++L
Sbjct: 130 GEFTKRAFLNGRLDLSQSEAVMDLIRAKTDKSMKVALNQLDGDLSRLIRNLRQDILDVLA 189
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D + + L+ +K + Q ++ L+TA K+L+ GL AI+G+PNV
Sbjct: 190 QVEVNIDYPEYDAVEEMTTKLLKEKAEDIQQRIQGLLKTAKQGKVLRDGLATAIIGQPNV 249
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN+ ++AIVT +AGTTRDVIE V V GVP+ L+DTAGIR+T+D VEKIGVE
Sbjct: 250 GKSSLLNSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAGIRDTNDQVEKIGVE 309
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS AD++++ + + + T ED +LL + ++ I+++NK D
Sbjct: 310 RSRKALGAADLVLLLIDSSNELTDEDRQLLEATKDKQR--------IIILNKTDLPRKVD 361
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCEQLMR 508
E K + + T V +G+ L I + I + V N R L +
Sbjct: 362 LEELKSLAGKSAVIETSIVNHEGMDQLGEQIGHMFFNKGIESNQNNVMVTNARHIGLLHQ 421
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+AL + I + +P+D ID+ LG+I+G+ +E+L +F +FC+GK
Sbjct: 422 ANDALSDVLKGINDGMPVDLVQIDMTRCWELLGEITGDSYQDELLDQLFSQFCLGK 477
>gi|154483917|ref|ZP_02026365.1| hypothetical protein EUBVEN_01623 [Eubacterium ventriosum ATCC
27560]
gi|149735408|gb|EDM51294.1| tRNA modification GTPase TrmE [Eubacterium ventriosum ATCC 27560]
Length = 459
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 171/481 (35%), Positives = 276/481 (57%), Gaps = 35/481 (7%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
TIAAI ++ G +GI+R+SG A+++V ++F+P K KK ++ SH V Y
Sbjct: 5 DTIAAISSAAGNS--GIGIIRVSGDEAIEVVDKIFRPANKNKKLAN------VESHTVHY 56
Query: 153 GVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
G ++D +D+VL + M P SYT ED VE+ CHG + L++VL L+ GA A+PG
Sbjct: 57 GHIMDGD-KTLDQVLVIVMKNPHSYTGEDTVEIDCHGGMLILKKVLDLVLKNGARTAEPG 115
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQAE V LI++K+ A ++++ ++GG S + +R I +
Sbjct: 116 EFTKRAFLNGRIDLSQAEAVMDLINSKNDFALNSSIEQLKGGVSDAIKDIRKDIIYHIAF 175
Query: 273 IEARLD---------FDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
IE+ LD +D+E+ + LN ++KI + +N ++++ G++ I
Sbjct: 176 IESALDDPEHISLDGYDEEITEM-LNENINKISKLVNSFDNG-------RIMKEGIKTVI 227
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383
+G+PN GKSSLLN +RAIVT+I GTTRD +E ++ G+ + ++DTAGIR+T+D+V
Sbjct: 228 LGKPNAGKSSLLNLMLGEDRAIVTDIEGTTRDTLEENINFNGLSLKIIDTAGIRDTEDLV 287
Query: 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443
E+IGV +++ +A D+II V D E++ I + I+++NK D
Sbjct: 288 ERIGVNKAKEIAKEGDLIIYVVDGSRELDDNDREIIKLINDKQ--------AIILVNKSD 339
Query: 444 CAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQC 503
+ N + +S D + G+G+ LE I + ++ + + N R
Sbjct: 340 M-DTVINIDDLKKDSNRDVILFSVKNGEGMDQLEEEIRNMFYSGKVTYNDQVYITNARHK 398
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
E L E+L ++K+S++ +P DF++IDL DA LG I GE + +++++ IF KFC+G
Sbjct: 399 EALENALESLKQVKNSVDAGMPEDFYSIDLMDAYTDLGLIIGESVEDDLVNEIFSKFCMG 458
Query: 564 K 564
K
Sbjct: 459 K 459
>gi|322372979|ref|ZP_08047515.1| tRNA modification GTPase TrmE [Streptococcus sp. C150]
gi|321278021|gb|EFX55090.1| tRNA modification GTPase TrmE [Streptococcus sp. C150]
Length = 456
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 178/479 (37%), Positives = 277/479 (57%), Gaps = 35/479 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+ I +VFK G SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTDAIAIANKVFK----------GKNLETVDSHTIN 54
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ + +++DEV+ M AP+++TREDVVE+ HG +L+ + +GA +A+P
Sbjct: 55 YGHIVE-NDDIIDEVMVSVMRAPKTFTREDVVEINTHGGVAVTNEILQLLIRSGARMAEP 113
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A++ + G +L+ + R + + L
Sbjct: 114 GEFTKRAFLNGRVDLTQAEAVMDLIRAKTDKAMAVAVSQLDGSLKNLINNTRQEILNTLA 173
Query: 272 EIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + NLV +K +EN L TA K+L+ GL AI+GRPNV
Sbjct: 174 QVEVNIDYPEYDDVEEVTTNLVREKTQEFQVLLENLLATAKRGKILREGLSTAIIGRPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIR+TDD+VEKIGVE
Sbjct: 234 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVE 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ ++ + T +D LL+ Q++ + I+++NK D P A
Sbjct: 294 RSKKALEEADLVLLVLNNSEPLTEQDRTLLDISQNSNR--------IILLNKTDL-PQAI 344
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCEQ 505
++ D + + + I +E I ++ GL + A + N R
Sbjct: 345 ----QLEELPEDVIPISVLKNENIDKIEERINQLFFDNAGLVEKDA---TYLSNARHISL 397
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 IEKALESLEAVNQGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 456
>gi|260495366|ref|ZP_05815493.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_33]
gi|260197144|gb|EEW94664.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_33]
Length = 455
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 172/480 (35%), Positives = 284/480 (59%), Gaps = 34/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T G G + IVR+SG +++I+ ++F+P K KK+S ++ +
Sbjct: 3 LDTIAAISTPRG--EGGISIVRMSGQDSLNILEKIFRP---KNKKASELKNYS-----IN 52
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG ++D ++VDEVL M AP +YTRED+VE+ CHG + +VL L+ GA +A+
Sbjct: 53 YGHIIDNE-HIVDEVLVSIMKAPNTYTREDIVEINCHGGFLVTEKVLEVVLKNGARIAEI 111
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V +I K+ + +L ++G +T+++ ++L
Sbjct: 112 GEFTKRAFLNGRIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKITTIKKSVLDLAA 171
Query: 272 EIEARLDF-----DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
I LD+ DD +P NLV D + S ++++ + + + K+++ G++ AI+G+
Sbjct: 172 HINVVLDYPEEGIDDPVPE---NLV-DNLKKASAEIKDLVLSYDKGKIIKDGIKTAIIGK 227
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSS+LN+ + +RAIVT I GTTRD+IE + + G+P+ L+DTAGIR TDDI+E I
Sbjct: 228 PNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIIENI 287
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVE+S+ + AD+I+ + ED + + I ++K +I ++NKID
Sbjct: 288 GVEKSKELINSADLILYVIDISREIDEEDFRIYDIINTDK--------VIGILNKIDIKK 339
Query: 447 SAS-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCE 504
++++K+ + A++ GI +LE I K + + ++ + N R
Sbjct: 340 DIDLSKFSKI----EKWIEISALSKIGIDNLENEIYKFIMNENVEDSSQKLVITNVRHKS 395
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L +T EAL+ + +I++ P+D +D++DA +L +++GE SE++L +IF FC+GK
Sbjct: 396 ALEKTNEALLNIIETIDKGFPMDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455
>gi|228477467|ref|ZP_04062103.1| tRNA modification GTPase TrmE [Streptococcus salivarius SK126]
gi|228250902|gb|EEK10090.1| tRNA modification GTPase TrmE [Streptococcus salivarius SK126]
Length = 456
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 178/479 (37%), Positives = 273/479 (56%), Gaps = 35/479 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG AV I +VFK G SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTDAVAIANKVFK----------GKNLETVASHTIN 54
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ + +DEV+ M AP+++TREDVVE+ HG +L+ + +GA +A+P
Sbjct: 55 YGHIVE-NDETIDEVMVSVMRAPKTFTREDVVEINTHGGVAVTNEILQLLIRSGARMAEP 113
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A++ + G L+ + R + + L
Sbjct: 114 GEFTKRAFLNGRVDLTQAEAVMDLIRAKTDKAMAVAVSQLDGSLKDLINNTRQEILNTLA 173
Query: 272 EIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + NLV +K +EN L TA K+L+ GL AI+GRPNV
Sbjct: 174 QVEVNIDYPEYDDVEEVTTNLVREKTQEFQALLENLLATAKRGKILREGLSTAIIGRPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIR+TDD+VEKIGVE
Sbjct: 234 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVE 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL +++ + I+++NK D +
Sbjct: 294 RSKKALEEADLVLLVLNSSEPLTEQDRTLLEISKNSNR--------IILLNKTDLPQAIQ 345
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKI----VGLHQIPAGGRRWAVNQRQCEQ 505
E D + + + I +E I ++ GL + A + N R
Sbjct: 346 MEELP-----EDVIPISVLKNENIDKIEDRINQLFFDNAGLVEKDA---TYLSNARHISL 397
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L +K +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 IEKALESLEAVKQGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 456
>gi|159899958|ref|YP_001546205.1| tRNA modification GTPase TrmE [Herpetosiphon aurantiacus DSM 785]
gi|159892997|gb|ABX06077.1| tRNA modification GTPase TrmE [Herpetosiphon aurantiacus DSM 785]
Length = 454
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 181/475 (38%), Positives = 261/475 (54%), Gaps = 30/475 (6%)
Query: 94 TIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAA+ T PPG VGI+R+SGP ++ I + KP +K G WR S+ +
Sbjct: 6 TIAALAT----PPGVGGVGIIRVSGPQSLAIAQALIKPRRK--------GVWR--SYQMR 51
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG VLD HG +VDEVLAV PRS+T ED++E+ CHG + LRR L L GA LA P
Sbjct: 52 YGHVLDEHGQIVDEVLAVFFKGPRSFTGEDILEIHCHGGPLPLRRTLTLALAHGARLANP 111
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEF+LRAF NGR+DL QAE +I A++ AL + GG S + ++R + + L
Sbjct: 112 GEFSLRAFANGRIDLVQAEATLDVIEAQTNLGLSLALDQLGGGLSRDLRTLREQLMYPLA 171
Query: 272 EIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+ A DF +D++P L + + ++ + L A+ +++ G + A+VGRPN G
Sbjct: 172 YVTALTDFPEDDVPSEELQQPLQQAQSL---LSQLLAGADQGVVVREGARAALVGRPNAG 228
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSL+NA ++ERAIVT I GTTRD +E + + G+PV L+DTAGI ETDD+VE+IGVER
Sbjct: 229 KSSLMNALLRTERAIVTAIPGTTRDTLEETANLGGIPVVLIDTAGITETDDVVERIGVER 288
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS- 449
S A AD++++ + + ED + P I++ K D A
Sbjct: 289 SRAALSKADLVLLLIDGSQPLSPEDLAIAQLTHER--------PTIVIATKADLGQHADL 340
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+ + + G G+ L T + + + L +P R N R E L R
Sbjct: 341 TALTQTHPKLRGSIAISSQAGTGLDYLGTMVAEQL-LGGLPLSDARLVTNPRHREALRRA 399
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL + + E P+D IDL +A +LG+I+GE + ++L+ IF +FCIGK
Sbjct: 400 NAALEQAIQGLREGRPVDLIAIDLHEAIASLGEITGETVEHDLLNMIFSRFCIGK 454
>gi|358051211|ref|ZP_09145429.1| tRNA modification GTPase TrmE [Staphylococcus simiae CCM 7213]
gi|357259287|gb|EHJ09126.1| tRNA modification GTPase TrmE [Staphylococcus simiae CCM 7213]
Length = 459
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 174/481 (36%), Positives = 272/481 (56%), Gaps = 32/481 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFK---PVKKKKKKSSGSGSWRPTSH 148
F TI +I T +G GA+GIVRLSGP AV I +++K P+++ SH
Sbjct: 3 FDTITSISTPMG--EGAIGIVRLSGPQAVTIADKLYKGKVPLEE------------VPSH 48
Query: 149 VVEYGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
+ YG ++D N V+EV+ + AP+++TRED++E+ CHG + + RVL + GA
Sbjct: 49 TINYGHIIDPDTNETVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTHGAR 108
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
+A+PGEFT RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ + R +
Sbjct: 109 MAEPGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKAQRQSIL 168
Query: 268 ELLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVG 325
++L ++E +D+ D++ ++++ A+ + + L+T K+++ GL IVG
Sbjct: 169 QILAQVEVNIDYPEYDDVEDATTEFLLEQSKAIKEQINRLLDTGAQGKIMREGLSTVIVG 228
Query: 326 RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEK 385
+PNVGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIR+T+DIVEK
Sbjct: 229 KPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEK 288
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445
IGVERS AD+I+ ++ + T ED L I++ I+++NK D
Sbjct: 289 IGVERSRKALSQADLILFVLNNNEALTDEDRTLYEVIKNEDA--------IVIVNKTDLE 340
Query: 446 PSASNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQC 503
+ ++V D + T + +GI +LE I + + + N R
Sbjct: 341 QHIN--IDEVKQMIGDTPLIQTSMLKQEGIDELELQIRDLFFGGDVQNQDMTYVSNSRHI 398
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
L + ++ + + E +P+D IDL LG+I GE S+E++ +F +FC+G
Sbjct: 399 SLLKQARQTIQDAIDAAEAGIPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLG 458
Query: 564 K 564
K
Sbjct: 459 K 459
>gi|444388286|ref|ZP_21186273.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PCS125219]
gi|444389852|ref|ZP_21187767.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PCS70012]
gi|444392405|ref|ZP_21190136.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PCS81218]
gi|444395454|ref|ZP_21192998.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0002]
gi|444397476|ref|ZP_21194959.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0006]
gi|444400077|ref|ZP_21197499.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0007]
gi|444403303|ref|ZP_21200407.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0008]
gi|444405123|ref|ZP_21202045.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0009]
gi|444408691|ref|ZP_21205324.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0010]
gi|444411183|ref|ZP_21207643.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0076]
gi|444413191|ref|ZP_21209507.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0153]
gi|444414337|ref|ZP_21210618.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0199]
gi|444417320|ref|ZP_21213365.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0360]
gi|444419498|ref|ZP_21215357.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0427]
gi|444422691|ref|ZP_21218338.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0446]
gi|444249900|gb|ELU56385.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PCS125219]
gi|444256315|gb|ELU62653.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PCS70012]
gi|444258097|gb|ELU64427.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0002]
gi|444260133|gb|ELU66441.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0006]
gi|444263454|gb|ELU69622.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PCS81218]
gi|444264687|gb|ELU70744.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0008]
gi|444267337|gb|ELU73243.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0007]
gi|444269518|gb|ELU75325.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0010]
gi|444273350|gb|ELU79023.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0153]
gi|444275063|gb|ELU80691.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0076]
gi|444275482|gb|ELU81108.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0009]
gi|444282523|gb|ELU87779.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0199]
gi|444283971|gb|ELU89139.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0360]
gi|444286727|gb|ELU91690.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0427]
gi|444287974|gb|ELU92879.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PNI0446]
Length = 479
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 275/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 28 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLNKVASHTLN 75
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 76 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 135
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 136 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 195
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 196 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 255
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 256 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 315
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 316 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 367
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 368 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 419
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 420 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 479
>gi|418086745|ref|ZP_12723915.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47033]
gi|418202285|ref|ZP_12838715.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA52306]
gi|419455415|ref|ZP_13995375.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae EU-NP04]
gi|421236158|ref|ZP_15692759.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2071004]
gi|421285385|ref|ZP_15736162.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA60190]
gi|421307285|ref|ZP_15757929.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA60132]
gi|353759006|gb|EHD39592.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47033]
gi|353868088|gb|EHE47978.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA52306]
gi|379629872|gb|EHZ94466.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae EU-NP04]
gi|395605077|gb|EJG65209.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2071004]
gi|395887364|gb|EJG98379.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA60190]
gi|395907892|gb|EJH18777.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA60132]
Length = 457
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 275/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 346 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLIEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|395241366|ref|ZP_10418378.1| tRNA modification GTPase TrmE [Lactobacillus pasteurii CRBIP 24.76]
gi|394481287|emb|CCI84618.1| tRNA modification GTPase TrmE [Lactobacillus pasteurii CRBIP 24.76]
Length = 461
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 276/480 (57%), Gaps = 33/480 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T IG G + IVR+SG A+ I RVFK G SH +
Sbjct: 8 FDTIAAISTPIG--EGGISIVRMSGEDAIKIANRVFK----------GKDLEAVDSHTIH 55
Query: 152 YGVVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + +DE + + AP+++TRED+VE+ CHG V +L+ L GA +A
Sbjct: 56 YGHIVDPAKKMTIDEAMVSVLRAPKTFTREDIVEINCHGGIVVTNHILQLLLANGARMAD 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V ++ AK+ A A+ + GG + + +R + ++ L
Sbjct: 116 PGEFTKRAFVNGRIDLTQAESVMDIVRAKTDKARQVAVGQLAGGLLTKIRQMRQEILDTL 175
Query: 271 TEIEARLDFDDEMPPLNLNLVMDK-IHAMSQDV----ENALETANYDKLLQSGLQIAIVG 325
+E +D+ P + + + K + SQ V + L+TA +L++GL AIVG
Sbjct: 176 ANVEVNIDY----PEYDADQITAKQMTETSQKVIDQIDQLLQTAQEGTILRNGLATAIVG 231
Query: 326 RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEK 385
+PNVGKSSLLN ++S++AIVT++AGTTRD +E V+V GVP+ L+DTAGI +T+D VEK
Sbjct: 232 QPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVRGVPLKLIDTAGIHDTEDKVEK 291
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445
IGVERS+ AD++++ + A T ED +LL K+ I+V+NK+D
Sbjct: 292 IGVERSQKALSQADLVLLLIDASHDLTEEDRKLLEMTADKKR--------IIVLNKMDLG 343
Query: 446 PSASNEWNKVGNSFNDHVFTCAVTGQ-GIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCE 504
+ + V V T ++ Q + DLE I K+ + + NQRQ
Sbjct: 344 QVLT--VDAVKELTGSEVVTTSILKQKNMADLEDMIKKLFFAGIENSNDQILVTNQRQTG 401
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L ++K+ L+ + ++E+E+P+D ID A LG+I+G+ +E+++ +F +FC+GK
Sbjct: 402 LLNKSKQELLDVIKALEDEVPVDIAQIDFTGAWETLGEITGDSAPDELVNALFSQFCLGK 461
>gi|389576825|ref|ZP_10166853.1| tRNA modification GTPase TrmE [Eubacterium cellulosolvens 6]
gi|389312310|gb|EIM57243.1| tRNA modification GTPase TrmE [Eubacterium cellulosolvens 6]
Length = 460
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 185/476 (38%), Positives = 270/476 (56%), Gaps = 28/476 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI AI T++ P +GIVRLSGP A+ I RV+ V K KK SG + + YG
Sbjct: 8 TIVAISTAM--APSGIGIVRLSGPDAIKIADRVY--VNPKGKKLSGQNGY-----TIHYG 58
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
V + +G V+DE LA+ M AP SYT ED VE CHG + +R+L A + AGA A+PGE
Sbjct: 59 NVCE-NGEVIDETLAMLMRAPHSYTGEDTVEFDCHGGVLATKRILEAIVHAGARPAEPGE 117
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
F+ RAFLNGR+DL+QAE V +I+AK+ A +A ++G S ++ +R K + I
Sbjct: 118 FSRRAFLNGRIDLTQAEAVMDIIAAKNDHALRSAQHQLKGSVSGKISDIRQKLLHETAHI 177
Query: 274 EARLDFDDEMPPLNLNLVMDK---IHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
EA LD D E L+ V D I A + +E LE+A+ K + G++ IVG+PN G
Sbjct: 178 EAALD-DPEHMSLD-GYVEDMRQVIMAQRKALERLLESADSGKFMTEGIKTVIVGKPNAG 235
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLN E+AIVT+IAGTTRD++E + + G+ + LLDTAGIR+ D++EKIGVER
Sbjct: 236 KSSLLNLLIGEEKAIVTDIAGTTRDILEEQINIKGITLRLLDTAGIRDASDVIEKIGVER 295
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
++ AD+++ V D E++ I+ K ++++NK D + ++
Sbjct: 296 AKEQVKDADLVLYVVDGSVALDDNDFEIMKLIKDRK--------FVVILNKNDLSTIVTS 347
Query: 451 E--WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E G + A +GI +LE I K+ I + N R +
Sbjct: 348 EELEQATGTPV---ISMSAKHSEGIDELEDQIEKMFFHGGISFNDEIYITNVRHKTCIEE 404
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+L + S+++++P DFW+IDL A +LGQI+GE SE++++ IF FC+GK
Sbjct: 405 AIRSLGLVLQSMDDDMPEDFWSIDLMGACDSLGQITGETTSEDLVNEIFSSFCMGK 460
>gi|225856671|ref|YP_002738182.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae P1031]
gi|225725175|gb|ACO21027.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae P1031]
Length = 457
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 275/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 346 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|320546578|ref|ZP_08040893.1| tRNA modification GTPase TrmE [Streptococcus equinus ATCC 9812]
gi|320448963|gb|EFW89691.1| tRNA modification GTPase TrmE [Streptococcus equinus ATCC 9812]
Length = 457
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 176/478 (36%), Positives = 272/478 (56%), Gaps = 31/478 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG A+DI +V++ G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDALDIAKKVYR----------GKDLSKVDSHTIN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + ++DEV+ ML+P+++TREDV+E+ HG +L+ L GA LA+
Sbjct: 54 YGHIVDPDNDEILDEVMVSVMLSPKTFTREDVIEINTHGGVAVTNEILQLVLRHGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSKLINDTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +EN L TA K+L+ GL AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTALIHEKTQEFQSLLENLLRTARRGKILREGLSTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDVVEKIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ +++ + T +D LL + + + I+++NK D
Sbjct: 294 ERSKKALEEADLVLLVLNSSEPLTDQDRALLELSKDSNR--------IILLNKTDLPEKI 345
Query: 449 SNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQL 506
+ D V +V + I +E I ++ + I + N R +
Sbjct: 346 E------ADQLPDDVIRISVLKNENINLIEERINQLFFDNAGIVEKDATYLSNARHISLI 399
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++L + +E +P+D IDL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 400 EKAVQSLQSVNEGLEMGMPVDLLQIDLTRCWEILGEITGDAAPDELINQLFTQFCLGK 457
>gi|416127540|ref|ZP_11596948.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis FRI909]
gi|418615301|ref|ZP_13178246.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU118]
gi|420178311|ref|ZP_14684643.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM057]
gi|420180882|ref|ZP_14687091.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM053]
gi|420186251|ref|ZP_14692323.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM040]
gi|420192462|ref|ZP_14698321.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM023]
gi|420211490|ref|ZP_14716849.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM001]
gi|420235733|ref|ZP_14740269.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis
NIH051475]
gi|319399917|gb|EFV88163.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis FRI909]
gi|374817475|gb|EHR81655.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU118]
gi|394246501|gb|EJD91757.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM057]
gi|394248361|gb|EJD93599.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM053]
gi|394252616|gb|EJD97645.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM040]
gi|394261192|gb|EJE05992.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM023]
gi|394280825|gb|EJE25096.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis NIHLM001]
gi|394302402|gb|EJE45847.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis
NIH051475]
Length = 459
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 174/478 (36%), Positives = 273/478 (57%), Gaps = 26/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI +I T +G GA+GIVRLSGP A++I ++K KKK S +H +
Sbjct: 3 FDTITSISTPMG--EGAIGIVRLSGPQAIEIGDILYKG---KKKLSE------VETHTIN 51
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D V+EV+ + AP+++TRED++E+ CHG + + R+L + GA +A+
Sbjct: 52 YGHIIDPETDETVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRILELTMTYGARMAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGE+T RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+L
Sbjct: 112 PGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEIL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + ++++ + +++ LET K+++ GL IVGRPN
Sbjct: 172 AQVEVNIDYPEYDDVEDATTDFLLEQSKRIKEEINRLLETGAQGKIMREGLSTVIVGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIR+T+DIVEKIGV
Sbjct: 232 VGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP-- 446
ERS AD+I+ ++ + T +D L I++ +I++INK D
Sbjct: 292 ERSRKALSEADLILFVLNNNEPLTEDDQTLFEVIKNE--------DVIVIINKTDLEQRL 343
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
S +G+ + T + +GI +LE I + ++ + N R L
Sbjct: 344 DVSELREMIGDM--PLIQTSMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLL 401
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++++ + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 402 KQARQSIQDAIDAAESGIPMDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459
>gi|227498804|ref|ZP_03928944.1| thiophene and furan oxidation protein thdF [Acidaminococcus sp.
D21]
gi|352685796|ref|YP_004897781.1| thiophene and furan oxidation protein thdF [Acidaminococcus
intestini RyC-MR95]
gi|226904256|gb|EEH90174.1| thiophene and furan oxidation protein thdF [Acidaminococcus sp.
D21]
gi|350280451|gb|AEQ23641.1| thiophene and furan oxidation protein thdF [Acidaminococcus
intestini RyC-MR95]
Length = 455
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 186/476 (39%), Positives = 277/476 (58%), Gaps = 29/476 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI+AI T++G GAVGI+R+SGP ++ +V R+F+ K+ SS RP ++YG
Sbjct: 4 TISAIATALG--VGAVGIIRVSGPESLRLVNRIFRA--KEPLSSS-----RP--RYLQYG 52
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ D G VDEVLAV M P SYT EDVVE+QCHG L+ +LR GA A+PGE
Sbjct: 53 HIHDGKGVDVDEVLAVYMPGPHSYTGEDVVEIQCHGGREALKEILRLTFSEGARPAEPGE 112
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGRLDL++AE V +I+AKS A AA G +G S + +R + +L+ +
Sbjct: 113 FTKRAFLNGRLDLTEAEAVMDIINAKSRRALVAAGRGHKGALSRSIREIRGRLRDLVVHL 172
Query: 274 EARLDF-DDEMPPLNLNLVMDKIHAMSQDVENAL----ETANYDKLLQSGLQIAIVGRPN 328
EA +D+ +D++ ++ D+ + Q +A+ + ++L+ GL+IAIVGRPN
Sbjct: 173 EAIIDYPEDDIE----DVTYDETEGVLQQCYDAVMQLRKKGETGQILREGLRIAIVGRPN 228
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN +++RAIV+ I GTTRD+IE +T+ G+P+ L DTAG+R+T+D VE+IGV
Sbjct: 229 VGKSSLLNRLLQTDRAIVSNIPGTTRDIIEEQMTLDGIPLVLTDTAGLRDTEDYVEQIGV 288
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
+RS A+ A+++++ + + T ED +LL +++ P ++++NK D AP+
Sbjct: 289 KRSRAILEDAELVLVVLDSASPLTDEDRKLLAAVKNR--------PHLVLLNKSDLAPAL 340
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
S E + S D + G G+ + + V A N RQ L +
Sbjct: 341 SREEVE-ALSGGDVLSLSVKDGAGMDQVGIHLRHFVMGEGSDAEMGLMTQNARQGMLLEQ 399
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L LP D TIDL LG+I+G+D+ EE+++ IF +FC+GK
Sbjct: 400 AAHHLAETLRDARAHLPYDCLTIDLTQVLHELGEITGDDVPEEIINEIFAQFCVGK 455
>gi|336401750|ref|ZP_08582508.1| tRNA modification GTPase mnmE [Fusobacterium sp. 21_1A]
gi|336160461|gb|EGN63507.1| tRNA modification GTPase mnmE [Fusobacterium sp. 21_1A]
Length = 455
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 173/480 (36%), Positives = 283/480 (58%), Gaps = 34/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T G G + IVR+SG +++I+ ++F+P K KK+S ++ +
Sbjct: 3 LDTIAAISTPRG--EGGISIVRMSGQDSLNILEKIFRP---KNKKASELKNYS-----IN 52
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG ++D ++VDEVL M AP +YTRED+VE+ CHG + +VL L+ GA +A+
Sbjct: 53 YGHIIDNE-HIVDEVLVSIMKAPNTYTREDIVEINCHGGFLVTEKVLEVVLKNGARIAEI 111
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V +I K+ + +L ++G + +++ ++L
Sbjct: 112 GEFTKRAFLNGRIDLTQAEAVIDVIHGKTEISLSLSLNQLRGDLRDKIATIKKSVLDLAA 171
Query: 272 EIEARLDF-----DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
I LD+ DD +P NLV D + S ++++ + + + K+++ G++ AI+G+
Sbjct: 172 HINVVLDYPEEGIDDPVPE---NLV-DNLKKASAEIKDLVLSYDKGKIIKDGIKTAIIGK 227
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSS+LN+ + +RAIVT I GTTRD+IE + + G+P+ L+DTAGIR TDDI+E I
Sbjct: 228 PNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIIENI 287
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVE+S+ + AD+I+ + ED + + I ++K +I ++NKID
Sbjct: 288 GVEKSKELINSADLILYVIDTSRKIDEEDFRIYDIINTDK--------VIGILNKIDIKK 339
Query: 447 SAS-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCE 504
++++K+ V A++ GI +LE I K + I ++ + N R
Sbjct: 340 DIDLSKFSKI----EKWVEISALSKIGIDNLENEIYKFIMNENIEDSSQKLVITNVRHKS 395
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L +T EAL+ + +I++ P+D +D++DA +L +++GE SE++L +IF FC+GK
Sbjct: 396 ALEKTNEALLNIIETIDKGFPMDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455
>gi|293365349|ref|ZP_06612066.1| thiophene and furan oxidation protein ThdF [Streptococcus oralis
ATCC 35037]
gi|307703891|ref|ZP_07640832.1| tRNA modification GTPase TrmE [Streptococcus oralis ATCC 35037]
gi|291316799|gb|EFE57235.1| thiophene and furan oxidation protein ThdF [Streptococcus oralis
ATCC 35037]
gi|307622726|gb|EFO01722.1| tRNA modification GTPase TrmE [Streptococcus oralis ATCC 35037]
Length = 457
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 178/480 (37%), Positives = 272/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPQTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSRKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLQEAI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E D + + + I +E I + GL + A + N R
Sbjct: 346 ETEELP-----EDIIRISVLKNRNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|251800245|ref|YP_003014976.1| tRNA modification GTPase TrmE [Paenibacillus sp. JDR-2]
gi|247547871|gb|ACT04890.1| tRNA modification GTPase TrmE [Paenibacillus sp. JDR-2]
Length = 459
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 180/476 (37%), Positives = 277/476 (58%), Gaps = 26/476 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++G G + I+R+SGP A++ R+F+ S + +H V+YG
Sbjct: 5 TIAAISTAVG--EGGIAIIRVSGPDAIEGTARIFR---------SRTDLRDAATHTVQYG 53
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVL-RACLEAGATLAQP 211
++D ++G V+EV+ M PRS+T EDVVE+ HG V +++VL + L+ G LA+P
Sbjct: 54 HIIDPKNGEQVEEVIVTVMRGPRSFTAEDVVEINAHGGVVAVKKVLDQVLLQDGMRLAEP 113
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL QAE V LI +KS A A +G S + ++R IELL
Sbjct: 114 GEFTKRAFLNGRIDLMQAEAVIDLIRSKSDRAFSVARKQAEGTLSKRIKALRQTVIELLA 173
Query: 272 EIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
IE +D+ + ++ L + ++ + +++ L+TAN K+L+ G+ AIVGRPNVG
Sbjct: 174 HIEVNIDYPEHDVEDLTSAYIREQSGSALEEIGKLLKTANEGKILREGIMTAIVGRPNVG 233
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLN ++ +AIVT+I GTTRDVIE VT+ +P+ LLDTAGIRET+D+VE+IGVER
Sbjct: 234 KSSLLNMLAQENKAIVTDIPGTTRDVIEEYVTLNHIPLRLLDTAGIRETNDVVERIGVER 293
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S AD+I+ ++ + +D LL +++ + +IL+INK D
Sbjct: 294 SHNALEEADLILFVLNNNEPIHEDDRALLEKVKDRQ--------LILIINKSDLESKL-- 343
Query: 451 EWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E ++ ++ V G+ LE AI K+ Q+ +G + N R L R
Sbjct: 344 EMAEIEALIDEERIVRMSVREEDGLDRLEKAISKLFFEGQLDSGDLTYVSNVRHISLLKR 403
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+++L+ + +P+D ID+R A +LG+I G+++ + ++ IF +FC+GK
Sbjct: 404 AQQSLIDAIDASNAGIPIDLIQIDVRSAWESLGEILGDEVGDSLIDQIFSQFCLGK 459
>gi|418325318|ref|ZP_12936525.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU071]
gi|365228567|gb|EHM69748.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU071]
Length = 459
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 174/478 (36%), Positives = 273/478 (57%), Gaps = 26/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI +I T +G GA+GIVRLSGP A++I ++K KKK S +H +
Sbjct: 3 FDTITSISTPMG--EGAIGIVRLSGPQAIEIGDILYKG---KKKLSE------VETHTIN 51
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D V+EV+ + AP+++TRED++E+ CHG + + R+L + GA +A+
Sbjct: 52 YGHIIDPETKETVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRILELTMTYGARMAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGE+T RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+L
Sbjct: 112 PGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEIL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + ++++ + +++ LET K+++ GL IVGRPN
Sbjct: 172 AQVEVNIDYPEYDDVEDATTDFLLEQSKRIKEEINRLLETGAQGKIMREGLSTVIVGRPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIR+T+DIVEKIGV
Sbjct: 232 VGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP-- 446
ERS AD+I+ ++ + T +D L I++ +I++INK D
Sbjct: 292 ERSRKALSEADLILFVLNNNEPLTEDDQTLFEVIKNE--------DVIVIINKTDLEQRL 343
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
S +G+ + T + +GI +LE I + ++ + N R L
Sbjct: 344 DVSELREMIGDM--PLIQTSMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLL 401
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++++ + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 402 KQARQSIQDAIDAAESGIPMDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459
>gi|303255573|ref|ZP_07341624.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae BS455]
gi|303260461|ref|ZP_07346429.1| tRNA modification GTPase [Streptococcus pneumoniae SP-BS293]
gi|303262818|ref|ZP_07348755.1| tRNA modification GTPase [Streptococcus pneumoniae SP14-BS292]
gi|303265288|ref|ZP_07351198.1| tRNA modification GTPase [Streptococcus pneumoniae BS397]
gi|303266495|ref|ZP_07352382.1| tRNA modification GTPase [Streptococcus pneumoniae BS457]
gi|303268386|ref|ZP_07354182.1| tRNA modification GTPase [Streptococcus pneumoniae BS458]
gi|387759262|ref|YP_006066240.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae INV200]
gi|418112379|ref|ZP_12749381.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41538]
gi|418180190|ref|ZP_12816762.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41688]
gi|418199968|ref|ZP_12836413.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47976]
gi|419514571|ref|ZP_14054198.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae
England14-9]
gi|419523236|ref|ZP_14062816.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13723]
gi|421268599|ref|ZP_15719469.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SPAR95]
gi|421295991|ref|ZP_15746703.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA58581]
gi|301801851|emb|CBW34569.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae INV200]
gi|302597429|gb|EFL64524.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae BS455]
gi|302636016|gb|EFL66514.1| tRNA modification GTPase [Streptococcus pneumoniae SP14-BS292]
gi|302638373|gb|EFL68840.1| tRNA modification GTPase [Streptococcus pneumoniae SP-BS293]
gi|302642107|gb|EFL72458.1| tRNA modification GTPase [Streptococcus pneumoniae BS458]
gi|302643946|gb|EFL74206.1| tRNA modification GTPase [Streptococcus pneumoniae BS457]
gi|302645153|gb|EFL75390.1| tRNA modification GTPase [Streptococcus pneumoniae BS397]
gi|353784245|gb|EHD64666.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41538]
gi|353846156|gb|EHE26191.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41688]
gi|353865015|gb|EHE44924.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47976]
gi|379557967|gb|EHZ23004.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13723]
gi|379637667|gb|EIA02220.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae
England14-9]
gi|395870094|gb|EJG81208.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SPAR95]
gi|395897204|gb|EJH08168.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA58581]
Length = 457
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 275/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTESFAIAQKIFK----------GKDLSQVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 346 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|306829480|ref|ZP_07462670.1| tRNA modification GTPase TrmE [Streptococcus mitis ATCC 6249]
gi|304428566|gb|EFM31656.1| tRNA modification GTPase TrmE [Streptococcus mitis ATCC 6249]
Length = 457
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 178/480 (37%), Positives = 274/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + IV ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIVQKIFK----------GKDLSKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G ++DEV+ M +P+++TRED++E+ HG +L+ + GA +A+
Sbjct: 54 YGHIVDPQTGEIMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLVIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD++++ ++A + T++D +LL Q + I+++NK D P A
Sbjct: 294 ERSRKALKEADLVLLVLNASEPLTAQDRQLLEISQDTNR--------IILLNKTDL-PEA 344
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
+ D + + Q I +E I + GL + A + N R
Sbjct: 345 I----ETSELPEDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|417935023|ref|ZP_12578343.1| tRNA modification GTPase TrmE [Streptococcus mitis bv. 2 str.
F0392]
gi|340771593|gb|EGR94108.1| tRNA modification GTPase TrmE [Streptococcus mitis bv. 2 str.
F0392]
Length = 457
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 273/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPQTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVRKKTKEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D P A
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDL-PEA 344
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKI----VGLHQIPAGGRRWAVNQRQCE 504
+ D + + Q I +E I + GL + A + N R
Sbjct: 345 I----ETSELPEDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|374298380|ref|YP_005048571.1| tRNA modification GTPase trmE [Clostridium clariflavum DSM 19732]
gi|359827874|gb|AEV70647.1| tRNA modification GTPase trmE [Clostridium clariflavum DSM 19732]
Length = 460
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 162/422 (38%), Positives = 256/422 (60%), Gaps = 14/422 (3%)
Query: 147 SHVVEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAG 205
+H + YG +++ G ++DEVL M P ++TREDVVE+ CHG V L+ +L L+ G
Sbjct: 49 THTINYGKIINPETGEILDEVLLSKMKKPNTFTREDVVEINCHGGTVVLKNILELVLKKG 108
Query: 206 ATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAK 265
A +A+PGEFT RAFLNGRLDLSQAE V LI+AK+ ++ AA+ ++G S + R K
Sbjct: 109 ARIAEPGEFTKRAFLNGRLDLSQAEAVIDLINAKTSESSKAAMNQLEGKLSVKLKEARKK 168
Query: 266 CIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIV 324
IE+L IE +D+ + ++ + V +I + + + N ++ ++++ G+ IV
Sbjct: 169 LIEVLAHIEVTVDYPEHDIEEITGEKVYSEIKDIREKLNNIIKGFEKGRIIREGVNAVIV 228
Query: 325 GRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVE 384
GRPNVGKSSLLN + RAIVT+I GTTRD+IE + + GVPV ++DTAGIRETDD+VE
Sbjct: 229 GRPNVGKSSLLNELTGKNRAIVTDIPGTTRDIIEEYINLNGVPVRIIDTAGIRETDDLVE 288
Query: 385 KIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDC 444
KIGVE++ AD+IIM + + G ED+E+L++++ K +I+++NKID
Sbjct: 289 KIGVEKTNKELESADLIIMMIDSYKGIEKEDTEILDKVKDKK--------VIVILNKIDL 340
Query: 445 APSASNEWNKVGNSFNDHVFTCAVTGQGI--QDLETAIMKIVGLHQIPAGGRRWAVNQRQ 502
A + ++ + D QGI +L A++++ ++ N R
Sbjct: 341 AN--EEKLAEIESKIEDKKVIRMSLKQGIGTDELADAVVELFVKGEVILNNEVIITNVRH 398
Query: 503 CEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCI 562
+ + E++ ++ + +PLD TID+ ++A LG+I+GE +SE+V++ IF +FC+
Sbjct: 399 KNLIDKAIESIDYAINAYKSGMPLDMITIDIVNSAQYLGEITGESVSEDVMNEIFSRFCL 458
Query: 563 GK 564
GK
Sbjct: 459 GK 460
>gi|256846684|ref|ZP_05552140.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_36A2]
gi|256717904|gb|EEU31461.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_36A2]
Length = 455
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 173/486 (35%), Positives = 278/486 (57%), Gaps = 46/486 (9%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T G G + IVR+SG +++I+ ++FKP K KK S ++ +
Sbjct: 3 LDTIAAISTPRG--EGGISIVRMSGQDSLNILEKIFKP---KNKKVSELKNYS-----IN 52
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG ++D ++VDEVL M AP +YTRED++E+ CHG + +VL L+ GA +A+
Sbjct: 53 YGHIIDNE-HIVDEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVVLKNGARIAEI 111
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V +I K+ + +L ++G + +++ ++L
Sbjct: 112 GEFTKRAFLNGRIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAA 171
Query: 272 EIEARLDF-----DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
I LD+ DD +P NLV D + S ++ + + + + K+++ G++ AI+G+
Sbjct: 172 HINVVLDYPEEGIDDPVPE---NLV-DNLKKASAEIRDLVSSYDKGKIIKDGIKTAIIGK 227
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSS+LN+ + +RAIVT I GTTRD+IE + + G+P+ L+DTAGIR TDDIVE I
Sbjct: 228 PNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLIDTAGIRNTDDIVENI 287
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVE+S+ + AD+I+ + ED + + I ++K +I ++NKID
Sbjct: 288 GVEKSKELINSADLILYVIDTSREIDEEDFRIYDIINTDK--------VIGILNKIDIKK 339
Query: 447 SAS-------NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV- 498
+W ++ A++ GI +LE I K + + ++ +
Sbjct: 340 DIDLSRFPKIEKWIEI----------SALSKMGIDNLENEIYKYIMNENVEDSSQKLVIT 389
Query: 499 NQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFG 558
N R L +T EAL+ + +I+ LP+D +D++DA +L +++GE SE++L +IF
Sbjct: 390 NVRHKSALEKTNEALLNIIETIDMGLPMDLMAVDIKDALDSLSEVTGEISSEDLLDHIFS 449
Query: 559 KFCIGK 564
FC+GK
Sbjct: 450 NFCVGK 455
>gi|418017794|ref|ZP_12657350.1| tRNA modification GTPase TrmE [Streptococcus salivarius M18]
gi|345526643|gb|EGX29954.1| tRNA modification GTPase TrmE [Streptococcus salivarius M18]
Length = 456
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 178/479 (37%), Positives = 272/479 (56%), Gaps = 35/479 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG AV I +VFK G SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGSDAVAIANKVFK----------GKNLETVASHTIN 54
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ + +DEV+ M AP+++TREDVVE+ HG +L+ + +GA +A+P
Sbjct: 55 YGHIVE-NDETIDEVMVSVMRAPKTFTREDVVEINTHGGVAVTNEILQLLIRSGARMAEP 113
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A++ + G L+ + R + + L
Sbjct: 114 GEFTKRAFLNGRVDLTQAEAVMDLIRAKTDKAMAVAVSQLDGSLKDLINNTRQEILNTLA 173
Query: 272 EIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + NLV +K +EN L TA K+L+ GL AI+GRPNV
Sbjct: 174 QVEVNIDYPEYDDVEEVTTNLVREKTQEFQALLENLLATAKRGKILREGLSTAIIGRPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIR+TDD+VEKIGVE
Sbjct: 234 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVE 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL Q++ + I+++NK D +
Sbjct: 294 RSKKALEEADLVLLVLNSSEPLTEQDRTLLEISQNSNR--------IILLNKTDLPQAIQ 345
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCEQ 505
E D + + + I +E I ++ GL + A + N R
Sbjct: 346 MEELP-----EDVIPISVLKNENIDKIEDCINQLFFDNAGLVEKDA---TYLSNARHISL 397
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 IEKALESLEAVNQGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 456
>gi|307704774|ref|ZP_07641670.1| tRNA modification GTPase TrmE [Streptococcus mitis SK597]
gi|307621683|gb|EFO00724.1| tRNA modification GTPase TrmE [Streptococcus mitis SK597]
Length = 457
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 272/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTESFAIAQKIFK----------GKDLSQVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPLTGKVMDEVMMGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + TS+D +LL Q + I+++NK D
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTSQDRQLLEISQDTNR--------IILLNKTDLP--- 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E + D + + Q I +E I + GL + A + N R
Sbjct: 343 --ETIETSELPEDIIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|402814447|ref|ZP_10864041.1| tRNA modification GTPase MnmE [Paenibacillus alvei DSM 29]
gi|402508294|gb|EJW18815.1| tRNA modification GTPase MnmE [Paenibacillus alvei DSM 29]
Length = 458
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 180/475 (37%), Positives = 271/475 (57%), Gaps = 21/475 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
+ IAA+ T +G G + I+R+SG + V R+F+ K + S H +
Sbjct: 3 YEPIAAVSTPLG--EGGIAIIRVSGEGSFAEVDRIFRSKTKLTEAES---------HTIH 51
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V+EVL M PRS+T EDVVE+ HG + +R+V+ L+ G LA+
Sbjct: 52 YGHIVDPKSGERVEEVLVSVMRGPRSFTTEDVVEINTHGGIISVRKVMDILLQQGIRLAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI +KS A A+ QG S+ + S+R IE L
Sbjct: 112 PGEFTKRAFLNGRIDLSQAEAVIDLIRSKSDRAFSIAMKQAQGQLSNRIKSLRHTLIETL 171
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IE +D+ + ++ L + DK + ++V L+TA+ K+L+ G+ AI+GRPNV
Sbjct: 172 AHIEVNIDYPEHDVEELTSAFIQDKCGHVMEEVMRLLKTASEGKILREGIVTAIIGRPNV 231
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ++ +AIVT+I GTTRDV+E VT+ G+P+ LLDTAGIRET D+VE+IGVE
Sbjct: 232 GKSSLLNTLAQDNKAIVTDIPGTTRDVVEQFVTINGIPLRLLDTAGIRETTDVVERIGVE 291
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS + AD+I+ V+ D ++ E + +I + +I+++NK+D
Sbjct: 292 RSRSALQEADLILFVVNNNDELHPDEREWMEQITGRQ--------VIVIVNKMDLPTVLD 343
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+ K N V A +G+ LE I ++ I AG + N R L ++
Sbjct: 344 DAPLKEAFGENQIVRMSAKEQEGVDALEKVISELFISGGIEAGDMTYVSNVRHIALLKKS 403
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+AL + ++ +P+D ID+R A LG+I G+ + + ++ IF +FC+GK
Sbjct: 404 LQALKDAVGASQQGIPIDMIQIDVRTAWELLGEIIGDAVGDSLIDQIFSQFCLGK 458
>gi|365838857|ref|ZP_09380114.1| tRNA modification GTPase TrmE [Anaeroglobus geminatus F0357]
gi|364566367|gb|EHM44059.1| tRNA modification GTPase TrmE [Anaeroglobus geminatus F0357]
Length = 458
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 177/477 (37%), Positives = 274/477 (57%), Gaps = 31/477 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAA+ T +G +GI+R+SGP A ++ +VF+P K+ G + +G
Sbjct: 7 TIAAVATPLG--ESGIGIIRISGPEAYEVGAKVFRPKGKQ-------GIKEYKDRTIHFG 57
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
++D G +DEVL + M P SYT E+++E+QCHG + +L+ L GA LA+PGE
Sbjct: 58 TIVDEGGEEIDEVLVLIMKEPHSYTAENILEIQCHGGRQPIASILQLVLRNGARLAEPGE 117
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGR+DL+QAE V +I AKS AA++ ++G S LV +R +L+T +
Sbjct: 118 FTQRAFLNGRIDLAQAEAVMDIIQAKSRQGLSAAVSQLEGKLSKLVRKMRTDLTDLITRL 177
Query: 274 EARLDFDDEMPPLNLNLVMDKIHA---MSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
E +D+ +E L +V D I A M + + L + ++++ G+ +AIVG PN G
Sbjct: 178 EVTVDYPEE--DLEDIVVRDMIGALTEMKEKIRIMLAQSVKGRIIRDGVTVAIVGAPNAG 235
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLN ERAIVT+I GTTRD++E V++ G+P L+DTAGIRET D+VE IGV +
Sbjct: 236 KSSLLNYLLSEERAIVTDIPGTTRDILEEWVSIQGIPFQLVDTAGIRETIDVVETIGVTK 295
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
+ AD++++ V T ED LL ++ + + LV+NKID A +
Sbjct: 296 AREYLERADIVLVVVDRSKALTKEDKCLLQSVKGKQVA--------LVLNKIDLADGIKH 347
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV---NQRQCEQLM 507
E ++ + A G+G+++LE ++ + G + V N R E +
Sbjct: 348 E--ELSEFSYPLILVSAKNGEGMEELEQFLVD----RSLQGGMNGYDVLITNTRHIELVR 401
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++ AL R + +I++ +PLDF ID+R+A LG I+G+ I ++++ IF +FC+GK
Sbjct: 402 QSLAALERAEETIKKGMPLDFAIIDIREAWDLLGSITGDTIHDDIVGEIFNRFCLGK 458
>gi|429764088|ref|ZP_19296417.1| tRNA modification GTPase TrmE [Clostridium celatum DSM 1785]
gi|429188774|gb|EKY29641.1| tRNA modification GTPase TrmE [Clostridium celatum DSM 1785]
Length = 459
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 181/477 (37%), Positives = 277/477 (58%), Gaps = 25/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T++G G + I+R+SG A+DIV ++FKP S S+ ++
Sbjct: 4 FDTICAIATALG--EGGIAIIRISGDKALDIVSKIFKP-------KSNDDIKNMKSYTMK 54
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG + D N ++DEV+ M PRS+T EDV+E+ CHG V +VL ++AGA LA+
Sbjct: 55 YGHIYDVETNELIDEVIISFMKGPRSFTAEDVIEINCHGGVVSTNKVLETVIKAGARLAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I AK+ A +AL G S + +R + +L
Sbjct: 115 PGEFTKRAFLNGRIDLSQAEAVMDIIKAKTDLAMKSALMQSTGHLSKEINKLREYMLNVL 174
Query: 271 TEIEARLDF---DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
+E +DF D+E+ P V + + +++ L+ A+ KL++ GL +AIVG+P
Sbjct: 175 ALVEFAVDFTEDDEEVDPSIPLRVGESLEKAINEMKVLLKGADEGKLIREGLSLAIVGKP 234
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLNA + +RAIVT+IAGTTRD+IE + + G+PV ++DTAGIRET+D+VEKIG
Sbjct: 235 NVGKSSLLNALLREKRAIVTDIAGTTRDIIEEYINLDGIPVKIIDTAGIRETEDVVEKIG 294
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS+ AD++++ + + ED E+++ + K ++++NKID
Sbjct: 295 VERSKEKIEEADLVLLVLDSSRELDDEDREIIDAVGDKK--------CVVILNKIDLESK 346
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ N + N F + + A G+ DL+ I ++ +I A + N R + L
Sbjct: 347 I--DENIISN-FENIIKISAKEEIGLGDLKNTIKELFFSGKIDAESLIIS-NSRHKQALF 402
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
R E S + LD +I + + AL +I+G+++ E++++ IFG FC+GK
Sbjct: 403 RALENAENALSRVRMNEYLDLISIFVTSSLRALNEITGDELEEDLVNKIFGDFCVGK 459
>gi|418965031|ref|ZP_13516818.1| tRNA modification GTPase TrmE [Streptococcus constellatus subsp.
constellatus SK53]
gi|383343864|gb|EID22036.1| tRNA modification GTPase TrmE [Streptococcus constellatus subsp.
constellatus SK53]
Length = 457
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 175/477 (36%), Positives = 275/477 (57%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTESFAIAQKIFK----------GKDLSKVASHTLN 53
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D H N V+DEV+ M +P+++TREDV+E+ HG +L+ + GA +A
Sbjct: 54 YGHIIDPHSNQVLDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNGILQLAIREGARMAD 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE + +I AK+ A + A+ + G S L+ ++R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAIMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + + L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTAKLLCEKTADFEELLTQLLKTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIR+TDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLCEDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q +T IL++NK D
Sbjct: 294 ERSKKALKDADLVLLVLNANEPLTEQDHKLLEISQ--------NTNRILLLNKTDL---- 341
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
+E + +D + A+ Q I +E I ++ + I + N R +
Sbjct: 342 -DEKIETTQLPDDFIKISALQNQNIDKIEERINQLFFENAGIAEQDATYLSNSRHISLIE 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + ++ +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 401 KAIESLHAVNEGLDLGMPVDLVQVDLTQTWRILGEITGDAAPDELITQLFSQFCLGK 457
>gi|194398466|ref|YP_002037652.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae G54]
gi|418121082|ref|ZP_12758028.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44194]
gi|419490929|ref|ZP_14030669.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47179]
gi|419532361|ref|ZP_14071877.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47794]
gi|421275782|ref|ZP_15726609.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA52612]
gi|194358133|gb|ACF56581.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae G54]
gi|353793909|gb|EHD74268.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44194]
gi|379594508|gb|EHZ59318.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47179]
gi|379606145|gb|EHZ70894.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47794]
gi|395872202|gb|EJG83301.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA52612]
Length = 457
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 275/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTNSFAIAQKIFK----------GKDLSQVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPLTGKVMDEVMIGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 346 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|395238940|ref|ZP_10416841.1| tRNA modification GTPase TrmE [Lactobacillus gigeriorum CRBIP
24.85]
gi|394477044|emb|CCI86818.1| tRNA modification GTPase TrmE [Lactobacillus gigeriorum CRBIP
24.85]
Length = 461
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 180/479 (37%), Positives = 277/479 (57%), Gaps = 31/479 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T IG G + IVR+SG AV I RVFK G + SH +
Sbjct: 8 FDTIAAISTPIG--EGGISIVRMSGEEAVQIANRVFK----------GKDLEKVPSHTIH 55
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + +++DE + + AP+++TRED+VE+ CHG V +L+ L GA +A
Sbjct: 56 YGYIVDPANDSMIDEAMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQLLLANGARMAD 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE+V ++ AK+ A A+ + GG S + +R ++ L
Sbjct: 116 PGEFTKRAFVNGRIDLTQAESVMDIVRAKTDKARQVAVGQLVGGLHSKINELRQNLLDTL 175
Query: 271 TEIEARLDFDDEMPPLNLNLVMDK-IHAMSQ----DVENALETANYDKLLQSGLQIAIVG 325
+E +D+ P + + V K + A S+ ++ L++A +L++GL AIVG
Sbjct: 176 ANVEVNIDY----PEYDADQVTAKQMRAASETIIAKIDKLLQSAQEGTILRNGLATAIVG 231
Query: 326 RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEK 385
+PNVGKSSLLN ++S++AIVT++AGTTRD +E V+V GVP+ L+DTAGI +TDD VEK
Sbjct: 232 QPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVRGVPLKLIDTAGIHDTDDKVEK 291
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445
IGV RS+ AD++++ + A ED LL + +NKK I+V+NK D
Sbjct: 292 IGVARSQKALEQADLVLLLIDASQELNDEDRALL-ELTANKKR-------IIVLNKSDLG 343
Query: 446 PSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+ E K S ++ V T + + LE I ++ + + NQRQ
Sbjct: 344 QKVTPEEMK-AISGSEVVATSILKEDNLSSLEDLIKQLFFSGIENSQDQILVTNQRQVGL 402
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + K+ L + ++++E+P+D IDL A LG+I+G+ +E+++ +F +FC+GK
Sbjct: 403 LNKAKQQLKDVIQAVDDEVPVDIAQIDLTGAWETLGEITGDSAPDELINALFSQFCLGK 461
>gi|385260363|ref|ZP_10038511.1| tRNA modification GTPase TrmE [Streptococcus sp. SK140]
gi|385191627|gb|EIF39040.1| tRNA modification GTPase TrmE [Streptococcus sp. SK140]
Length = 457
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 180/482 (37%), Positives = 276/482 (57%), Gaps = 39/482 (8%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFTIAQKIFK----------GKDLTKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G ++DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPQTGKIMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTLEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D P A
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDL-PEA 344
Query: 449 --SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQ 502
+ E + D + + Q I +E I + GL + A + N R
Sbjct: 345 IETTELPE------DVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARH 395
Query: 503 CEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCI 562
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+
Sbjct: 396 ISLIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCL 455
Query: 563 GK 564
GK
Sbjct: 456 GK 457
>gi|309800286|ref|ZP_07694459.1| tRNA modification GTPase TrmE [Streptococcus infantis SK1302]
gi|308116070|gb|EFO53573.1| tRNA modification GTPase TrmE [Streptococcus infantis SK1302]
Length = 457
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 179/481 (37%), Positives = 275/481 (57%), Gaps = 37/481 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V+DEV+ M +P+++TRED++E+ HG +L+ + GA +A+
Sbjct: 54 YGHIVDPQTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTLEFEQLLTNLLKTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPEAI 345
Query: 449 SNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKI----VGLHQIPAGGRRWAVNQRQC 503
+ D V +V Q I +E I + GL + A + N R
Sbjct: 346 ET------SELPDAVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHI 396
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+G
Sbjct: 397 SLIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLG 456
Query: 564 K 564
K
Sbjct: 457 K 457
>gi|336429174|ref|ZP_08609142.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336003090|gb|EGN33181.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 462
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 175/478 (36%), Positives = 277/478 (57%), Gaps = 28/478 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT-SHVVEY 152
TIAAI T++ +GIVR+SG A++I RV++ +G S + SH + Y
Sbjct: 6 TIAAIATAL--SDSGIGIVRISGDDAIEIGSRVYRS-------KNGCHSLKDYGSHTIHY 56
Query: 153 GVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
G ++D ++DEV+A M AP SYT+ED VE+ CHG + +++VL L GA LA+PG
Sbjct: 57 GFIMDGE-EILDEVMAAVMKAPNSYTKEDTVEINCHGGVLIVQKVLETVLRNGARLAEPG 115
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DL++AE V +I +++ A +++ ++G S + +R + + +
Sbjct: 116 EFTKRAFLNGRIDLAKAEAVMDIIHSRNEFALKSSMKQLKGSISDCIRQMREEILYEIAF 175
Query: 273 IEARLD----FDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
IE+ LD E P L + KI + +++A+ K+L+ G+ IVG+PN
Sbjct: 176 IESALDDPEHISTEGYPEKL---LPKIGDLLLRCNKLIDSADDGKVLKEGINTVIVGKPN 232
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
GKSSL+N E+AIVTE+AGTTRDV+E S+ + G+ + ++DTAGIR T+D+VEKIGV
Sbjct: 233 AGKSSLMNLLVGEEKAIVTEVAGTTRDVLEESIRLHGIGLNIIDTAGIRSTEDVVEKIGV 292
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ER+ +A AD+I+ V + D E+L+ I+ K I+++NK D P
Sbjct: 293 ERALKIASDADLILYVVDSSVALDESDEEILDLIRGKK--------CIVLLNKTDLVPVV 344
Query: 449 SNE--WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
E K+ ++ + T GI++ E I ++ + N R + L
Sbjct: 345 EEEELRKKLRDAEISVIRTSTRDNTGIEEFENTIKEMFFSGALSMNEEVIITNMRHKQAL 404
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+++L+ +K S+E+E+P DF++IDL A +LG I GE++ E++++ IF KFC+GK
Sbjct: 405 EEARDSLLMVKKSLEDEMPEDFYSIDLMSAYASLGYIIGEEVGEDLVNEIFSKFCMGK 462
>gi|419482037|ref|ZP_14021830.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA40563]
gi|379580911|gb|EHZ45800.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA40563]
Length = 457
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 275/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ ++R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 346 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAAESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|160882059|ref|YP_001561027.1| tRNA modification GTPase TrmE [Clostridium phytofermentans ISDg]
gi|189036198|sp|A9KLX9.1|MNME_CLOPH RecName: Full=tRNA modification GTPase MnmE
gi|160430725|gb|ABX44288.1| tRNA modification GTPase TrmE [Clostridium phytofermentans ISDg]
Length = 458
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 185/478 (38%), Positives = 268/478 (56%), Gaps = 31/478 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T G + IVR+SG A ++ ++F+ K K+ S SH V YG
Sbjct: 5 TIAAIAT--GLSNAGISIVRISGDQAFAVIDKIFQTKSKAKRLS------EMDSHTVHYG 56
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
++D ++DEV+ + M APRSYT ED +E+ CHG ++VL A L+AGA +A+PGE
Sbjct: 57 YIVDEE-EIIDEVMVIIMRAPRSYTMEDSIEIDCHGGITVTKKVLEAVLKAGARIAEPGE 115
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGR+DLSQAE V +I A + A ++ ++G V VR I I
Sbjct: 116 FTKRAFLNGRIDLSQAEAVIDVIHANNELALKNSMKQLKGNVLHKVKDVRHSIILDTAYI 175
Query: 274 EARLDFDDEMPPLNLNL------VMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
EA LD P +++L + D + +++ + T+ ++++ G++ I+GRP
Sbjct: 176 EAALD-----DPEHISLEGFSDKLRDNVIGSIKELSELINTSENGRMIKEGIRTVILGRP 230
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
N GKSSLLN ERAIVTEIAGTTRD IE +V + G+ + L+DTAGIRET D+VEK+G
Sbjct: 231 NAGKSSLLNLMVGEERAIVTEIAGTTRDTIEETVFLNGLCLNLIDTAGIRETSDLVEKLG 290
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VE+S A AD+II + A +D E+L I+ K I+++NK D
Sbjct: 291 VEKSLKSAKEADLIICVIDASTPLNQDDKEILEFIKDRKA--------IVLLNKSDLDSV 342
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQ-GIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
E K+ N + + Q GI+DLE I ++ I + N R L
Sbjct: 343 IEEE--KINLLTNKPILKISAIDQTGIKDLEQTITEMFFEGNISFNDEIYITNMRHKNAL 400
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K +L ++ SIE E+P DF++IDL +A LG I GE + E++++ IF +FC+GK
Sbjct: 401 VEAKVSLEQVIVSIENEMPEDFFSIDLMNAYEILGTIIGESVDEDLVNTIFKEFCMGK 458
>gi|419442502|ref|ZP_13982533.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13224]
gi|379554469|gb|EHZ19549.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13224]
Length = 457
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 275/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSQVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 346 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|332522452|ref|ZP_08398704.1| tRNA modification GTPase TrmE [Streptococcus porcinus str.
Jelinkova 176]
gi|332313716|gb|EGJ26701.1| tRNA modification GTPase TrmE [Streptococcus porcinus str.
Jelinkova 176]
Length = 458
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 175/480 (36%), Positives = 278/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A++I +VFK G SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTDALNIANKVFK----------GKNLHEVASHTIN 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG +++ + ++DEV+ MLAP+++TREDV+E+ HG +L+ ++ GA +A+
Sbjct: 55 YGHIINPANQEILDEVMVTVMLAPKTFTREDVIEINTHGGIAVTNEILQLLIKQGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 115 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSELINNTRQEILNTL 174
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +EN L TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTTALLREKTQEFQALLENLLRTARRGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIR+TDD+VEKIGV
Sbjct: 235 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDLVEKIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D LL Q + + ++++NK D
Sbjct: 295 ERSKKALKEADLVLLVLNASEPLTLQDRTLLELSQESNR--------LILLNKTDLPERI 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +++ + F + + + I +E I ++ GL + A + N R
Sbjct: 347 --ETDQLPSDF---IPISVLHHKNIDMIEDRINQLFFDNAGLVEQDA---TYLSNARHIS 398
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 399 LIEQALQSLQAVNDGLEMGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458
>gi|254302386|ref|ZP_04969744.1| thiophene/furan oxidation protein ThdF [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
gi|148322578|gb|EDK87828.1| thiophene/furan oxidation protein ThdF [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
Length = 455
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 173/480 (36%), Positives = 281/480 (58%), Gaps = 34/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI TS G G + IVR+SG +++I+ ++F+P K KK S ++ +
Sbjct: 3 LDTIAAISTSRG--EGGISIVRMSGQDSLNILEKIFRP---KNKKVSELKNYS-----IN 52
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG ++D ++VDEVL M AP +YTRED++E+ CHG + +VL L+ GA +A+
Sbjct: 53 YGHIIDNE-HIVDEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVVLKNGARIAEI 111
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V +I K+ + +L ++G + +++ ++L
Sbjct: 112 GEFTKRAFLNGRIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAA 171
Query: 272 EIEARLDF-----DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
I LD+ DD +P NLV D + S +++ + + + K+++ G++ AI+G+
Sbjct: 172 HINVVLDYPEEGIDDPVPE---NLV-DNLKKASAEIKELVSSYDKGKIIKDGIKTAIIGK 227
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSS+LN+ + +RAIVT I GTTRD+IE + + G+P+ L+DTAGIR TDDIVE I
Sbjct: 228 PNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENI 287
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVE+S+ + AD+I+ + ED + + I ++K +I ++NKID
Sbjct: 288 GVEKSKELINSADLILYVIDTSREIDEEDYRIYDIINTDK--------VIGILNKIDIKQ 339
Query: 447 SAS-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCE 504
+++ K+ + A++ GI +LE I K + + ++ + N R
Sbjct: 340 DIDLSKFPKI----EKWIEISALSKIGIDNLENEIYKYIMNENVEDSSQKLVITNVRHKS 395
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L +T EAL+ + +I+ LP+D +D++DA +L +++GE SE++L +IF FC+GK
Sbjct: 396 ALEKTNEALLNIIETIDMGLPMDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455
>gi|331702698|ref|YP_004399657.1| tRNA modification GTPase mnmE [Lactobacillus buchneri NRRL B-30929]
gi|329130041|gb|AEB74594.1| tRNA modification GTPase mnmE [Lactobacillus buchneri NRRL B-30929]
Length = 464
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 175/479 (36%), Positives = 272/479 (56%), Gaps = 28/479 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG + I+R+SG A+D+ ++++ G + S+
Sbjct: 8 FDTIAAIST----PPGEGGISIIRISGEEALDVAKKLYR----------GKDLDKVASNT 53
Query: 150 VEYGVVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D N VDEV+ M AP +YT ED+VE+ CHG V R+L+ L GA +
Sbjct: 54 INYGHIIDPDTNEEVDEVMLSVMRAPHTYTEEDIVEINCHGGIVATNRILQLALSHGARM 113
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQ+E V LI AK+ + AA+ + G S L+ +R ++
Sbjct: 114 AEPGEFTKRAFLNGRIDLSQSEAVMDLIEAKTDRSMKAAINQLDGNLSHLIKHLRQDILD 173
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L ++E +D+ D++ + L+ +K + + L+TA K+L+ GL +I+GR
Sbjct: 174 VLAQVEVNIDYPEYDDVETMTSKLLREKATDVHARIVQLLKTAKQGKILREGLATSIIGR 233
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN ++AIVT++ GTTRDV+E V V GVP+ L+DTAGIR+T D VEKI
Sbjct: 234 PNVGKSSLLNNLLHEDKAIVTDVPGTTRDVLEEYVNVHGVPLKLVDTAGIRDTTDKVEKI 293
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GV+RS AD++++ ++A + T ED +LL+ Q ++ I+++NK D
Sbjct: 294 GVDRSRKAINSADLVLLVLNASEPLTDEDKKLLSATQDKQR--------IIILNKTDLPT 345
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCEQ 505
+ K + + T A+ G+ LE I K+ I + V N R
Sbjct: 346 KIDQDQIKSLADGQNVISTSAIKADGLTQLEELIAKMFFDEGIESSQNDIMVTNARHIGL 405
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + K+AL + +++ +P+D ID+ LG+I+G+ +E++ +F +FC+GK
Sbjct: 406 LNQAKQALEDVVKGLDDGMPVDLVQIDMTRCWDFLGEITGDSYQDELIDQLFSQFCLGK 464
>gi|421145158|ref|ZP_15605050.1| tRNA modification GTPase TrmE [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
gi|395488432|gb|EJG09295.1| tRNA modification GTPase TrmE [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
Length = 455
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 172/486 (35%), Positives = 278/486 (57%), Gaps = 46/486 (9%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T G G + IVR+SG +++I+ ++FKP K KK S ++ +
Sbjct: 3 LDTIAAISTPRG--EGGISIVRMSGQDSLNILEKIFKP---KNKKVSELKNYS-----IN 52
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG ++D ++VDEVL M AP +YTRED++E+ CHG + +VL L+ GA +A+
Sbjct: 53 YGHIIDNE-HIVDEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVVLKNGARIAEI 111
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V +I K+ + +L ++G + +++ ++L
Sbjct: 112 GEFTKRAFLNGRIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAA 171
Query: 272 EIEARLDF-----DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
I LD+ DD +P NLV D + S ++ + + + + K+++ G++ AI+G+
Sbjct: 172 HINVVLDYPEEGIDDPVPE---NLV-DNLKKASAEIRDLVSSYDKGKIIKDGIKTAIIGK 227
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSS+LN+ + +RAIVT I GTTRD+IE + + G+P+ L+DTAGIR TDDIVE I
Sbjct: 228 PNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLIDTAGIRNTDDIVENI 287
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVE+S+ + AD+I+ + ED + + I ++K +I ++NKID
Sbjct: 288 GVEKSKELINSADLILYVIDTSREIDEEDFRIYDIINTDK--------VIGILNKIDIKK 339
Query: 447 SAS-------NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV- 498
+W ++ A++ GI +LE I K + + ++ +
Sbjct: 340 DIDLSRFPKIEKWIEI----------SALSKMGIDNLENEIYKYIMNENVEDSSQKLVIT 389
Query: 499 NQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFG 558
N R L +T EAL+ + +I++ P+D +D++DA +L +++GE SE++L +IF
Sbjct: 390 NVRHKSALEKTNEALLNIIETIDKGFPMDLMAVDIKDALDSLSEVTGEISSEDLLDHIFS 449
Query: 559 KFCIGK 564
FC+GK
Sbjct: 450 NFCVGK 455
>gi|387784177|ref|YP_006070260.1| tRNA modification GTPase trmE [Streptococcus salivarius JIM8777]
gi|338745059|emb|CCB95425.1| tRNA modification GTPase trmE [Streptococcus salivarius JIM8777]
Length = 456
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 179/479 (37%), Positives = 274/479 (57%), Gaps = 35/479 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG AV I +VFK G SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTDAVAIANKVFK----------GKNLETVASHTIN 54
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ + +DEV+ M AP+++TREDVVE+ HG +L+ + +GA +A+P
Sbjct: 55 YGHIVE-NDETIDEVMVSVMRAPKTFTREDVVEINTHGGVAVTNEILQLLIRSGARMAEP 113
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A++ + G L+ + R + + L
Sbjct: 114 GEFTKRAFLNGRVDLTQAEAVMDLIRAKTDKAMAVAVSQLDGSLKDLINNTRQEILNTLA 173
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + NLV +K +EN L TA K+L+ GL AI+GRPNV
Sbjct: 174 QVEVNIDYPEYDDVEEVTTNLVREKTQEFQVLLENLLATAKRGKILREGLSTAIIGRPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIR+TDD+VEKIGVE
Sbjct: 234 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVE 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL Q++ + I+++NK D P A
Sbjct: 294 RSKKALEEADLVLLVLNSSEPLTEQDRTLLEISQNSNR--------IILLNKTDL-PQAI 344
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCEQ 505
++ D + + + I +E I ++ GL + A + N R
Sbjct: 345 ----QLEELPEDVIPISVLKNENIDKIEDRINQLFFDNAGLVEKDA---TYLSNARHISL 397
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 IEKALESLEAVNQGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 456
>gi|296328796|ref|ZP_06871310.1| tRNA modification GTPase TrmE [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|296154131|gb|EFG94935.1| tRNA modification GTPase TrmE [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 455
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 173/480 (36%), Positives = 282/480 (58%), Gaps = 34/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T G G + IVR+SG +++I+ ++FKP K KK S ++ +
Sbjct: 3 LDTIAAISTPRG--EGGISIVRMSGQDSLNILEKIFKP---KNKKVSELKNYS-----IN 52
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG ++D ++VDEVL M AP +YTRED++E+ CHG + +VL L+ GA +A+
Sbjct: 53 YGHIIDNE-HIVDEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVVLKNGARIAEI 111
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V +I K+ + +L ++G + +++ ++L
Sbjct: 112 GEFTKRAFLNGRIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAA 171
Query: 272 EIEARLDF-----DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
I LD+ DD +P NLV + + S ++++ + + + K+++ G++ AI+G+
Sbjct: 172 HINVVLDYPEEGIDDPVPE---NLV-ENLKKASAEIKDLVSSYDKGKIIKDGIKTAIIGK 227
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSS+LN+ + +RAIVT I GTTRD+IE + + G+P+ L+DTAGIR TDDIVE I
Sbjct: 228 PNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENI 287
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVE+S+ + AD+I+ + ED + + I ++K +I ++NKID
Sbjct: 288 GVEKSKELINSADLILYVIDTSREIDEEDFRIYDIINTDK--------VIGILNKIDIKK 339
Query: 447 SAS-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCE 504
+ +++ K+ + A++ GI +LE I K + I ++ + N R
Sbjct: 340 EINLSKFPKI----EKWIEISALSKLGIDNLENEIYKYIMNENIEDSSQKLVITNVRHKS 395
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L +T EAL+ + +I+ LP+D +D++DA +L +++GE SE++L +IF FC+GK
Sbjct: 396 ALEKTNEALLNIIETIDMRLPMDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455
>gi|418146236|ref|ZP_12783018.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13637]
gi|353815032|gb|EHD95254.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13637]
Length = 457
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 275/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + IV ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIVQKIFK----------GKDLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 346 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|406028169|ref|YP_006727001.1| GTPase TrmE [Lactobacillus buchneri CD034]
gi|405126658|gb|AFS01419.1| GTPase TrmE [Lactobacillus buchneri CD034]
Length = 464
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 175/479 (36%), Positives = 272/479 (56%), Gaps = 28/479 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG + I+R+SG A+D+ ++++ G + S+
Sbjct: 8 FDTIAAIST----PPGEGGISIIRISGEEALDVAKKLYR----------GKDLDKVASNT 53
Query: 150 VEYGVVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D N VDEV+ M AP +YT ED+VE+ CHG V R+L+ L GA +
Sbjct: 54 INYGHIIDPDTNEEVDEVMLSVMRAPHTYTEEDIVEINCHGGIVATNRILQLALSHGARM 113
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQ+E V LI AK+ + AA+ + G S L+ +R ++
Sbjct: 114 AEPGEFTKRAFLNGRIDLSQSEAVMDLIEAKTDRSMKAAINQLDGNLSHLIKHLRQDILD 173
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L ++E +D+ D++ + L+ +K + + L+TA K+L+ GL +I+GR
Sbjct: 174 VLAQVEVNIDYPEYDDVETMTSKLLREKATDVHARIVQLLKTAKQGKILREGLATSIIGR 233
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN ++AIVT++ GTTRDV+E V V GVP+ L+DTAGIR+T D VEKI
Sbjct: 234 PNVGKSSLLNNLLHEDKAIVTDVPGTTRDVLEEYVNVRGVPLKLVDTAGIRDTTDKVEKI 293
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GV+RS AD++++ ++A + T ED +LL+ Q ++ I+++NK D
Sbjct: 294 GVDRSRKAINSADLVLLVLNASEPLTDEDKKLLSATQDKQR--------IIILNKTDLPT 345
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCEQ 505
+ K + + T A+ G+ LE I K+ I + V N R
Sbjct: 346 KIDQDQIKSLADGQNVISTSAIKADGLTQLEELIAKMFFDEGIESSQNDIMVTNARHIGL 405
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + K+AL + +++ +P+D ID+ LG+I+G+ +E++ +F +FC+GK
Sbjct: 406 LNQAKQALEDVVKGLDDGMPVDLVQIDMTRCWDFLGEITGDSYQDELIDQLFSQFCLGK 464
>gi|419766715|ref|ZP_14292892.1| tRNA modification GTPase TrmE [Streptococcus mitis SK579]
gi|383353755|gb|EID31358.1| tRNA modification GTPase TrmE [Streptococcus mitis SK579]
Length = 457
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 273/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D P A
Sbjct: 294 ERSKKALKEADLVLLVINASESLTAQDRQLLEISQ--------DTNRIILLNKTDL-PEA 344
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
+ D + + Q I +E I + GL + A + N R
Sbjct: 345 I----ETVELPEDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|417916060|ref|ZP_12559652.1| tRNA modification GTPase TrmE [Streptococcus mitis bv. 2 str. SK95]
gi|342831367|gb|EGU65684.1| tRNA modification GTPase TrmE [Streptococcus mitis bv. 2 str. SK95]
Length = 457
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 178/480 (37%), Positives = 274/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G ++DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPQTGKIMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFINGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTKEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D P A
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDL-PEA 344
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKI----VGLHQIPAGGRRWAVNQRQCE 504
+ D + + Q I +E I + GL + A + N R
Sbjct: 345 I----ETSELPEDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|346309529|ref|ZP_08851614.1| tRNA modification GTPase TrmE [Dorea formicigenerans 4_6_53AFAA]
gi|345898734|gb|EGX68596.1| tRNA modification GTPase TrmE [Dorea formicigenerans 4_6_53AFAA]
Length = 470
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 180/485 (37%), Positives = 277/485 (57%), Gaps = 35/485 (7%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++ +GIVR+SG AV+I R++K +KK S +PT H + YG
Sbjct: 7 TIAAISTAMSNS--GIGIVRMSGEEAVEIAERIYKGKNEKKL------SKQPT-HTIHYG 57
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
++D + +DEVL + M P SYT ED VE+ CHG +RR+L ++ GA A PGE
Sbjct: 58 YIVDGE-DTIDEVLVMLMRGPHSYTGEDTVEINCHGGVYVVRRILETVIKYGARPADPGE 116
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNG++DLSQAE V LIS+K+ A ++++ ++G + +R + + I
Sbjct: 117 FTKRAFLNGKMDLSQAEAVGDLISSKNEYALRSSVSQLKGNIKKEIQKIRVEILYHTAFI 176
Query: 274 EARLDFDDEMPPLNLNLVMDKIHAMSQD----VENALETANYDKLLQSGLQIAIVGRPNV 329
E LD + ++++ +K+ + +D +++ L T + ++++ G++ IVG+PN
Sbjct: 177 ETALD---DPEHISVDGYGEKLEVVVEDHMKSLKHLLSTCDDGRMIKEGIKTVIVGKPNA 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ERAIVTEIAGTTRDV+E + + G+ + ++DTAGIR+T+D+VEKIGV+
Sbjct: 234 GKSSLLNVLLGEERAIVTEIAGTTRDVLEEHMNLQGISLNIVDTAGIRDTEDVVEKIGVD 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
R++ A AD+I+ + A D +++ I K I+++NK D
Sbjct: 294 RAKENAKDADLIMYVIDASAPLDENDDDIMRMIYGRKA--------IILLNKADLNIILG 345
Query: 450 NEWNKVGNSFNDHVFTC----------AVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVN 499
+ K S + + +C A GQGI +LE + ++ +I + N
Sbjct: 346 KDEIKKKYSEINQLESCDIFPAIIEISAKNGQGIGELEQTLKEMFFEGKISFNDEIYITN 405
Query: 500 QRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGK 559
R L EAL ++K SI+ +P DF++IDL DA LG I+GE I E+++ IF K
Sbjct: 406 VRHKTALNNAYEALKKVKESIDMGMPEDFYSIDLMDAYEELGSITGETIGEDLVHEIFSK 465
Query: 560 FCIGK 564
FC+GK
Sbjct: 466 FCMGK 470
>gi|417793393|ref|ZP_12440671.1| tRNA modification GTPase TrmE [Streptococcus oralis SK255]
gi|334273121|gb|EGL91472.1| tRNA modification GTPase TrmE [Streptococcus oralis SK255]
Length = 457
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 273/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIA+I T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIASISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPQTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V LI AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDLIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDVVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD+++ ++A + T++D +LL Q T I+++NK D P A
Sbjct: 294 ERSKKALKEADLVLFVLNASEPLTAQDRQLLEVSQ--------DTNRIILLNKTDL-PEA 344
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
+ D + + Q I +E I + GL + A + N R
Sbjct: 345 I----ETSELPEDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|373498786|ref|ZP_09589287.1| tRNA modification GTPase mnmE [Fusobacterium sp. 12_1B]
gi|404367400|ref|ZP_10972767.1| tRNA modification GTPase mnmE [Fusobacterium ulcerans ATCC 49185]
gi|313690298|gb|EFS27133.1| tRNA modification GTPase mnmE [Fusobacterium ulcerans ATCC 49185]
gi|371960397|gb|EHO78055.1| tRNA modification GTPase mnmE [Fusobacterium sp. 12_1B]
Length = 456
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 180/489 (36%), Positives = 275/489 (56%), Gaps = 51/489 (10%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T G G +GIVR+SG A++I+G++FKP KK + + S +
Sbjct: 3 FDTIAAISTPRG--EGGIGIVRISGNNALEILGKIFKPKSKKNIEELKNFS-------IN 53
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG + D N+VDEVL M AP +YT+ED+VE+ CHG V +VL L+ GA +++
Sbjct: 54 YGHLYDGK-NLVDEVLVSIMKAPNTYTKEDIVEINCHGGFVITEKVLETVLKNGARISES 112
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGRLDL+QAE V +I K+ + +L ++G + ++ +++
Sbjct: 113 GEFTRRAFLNGRLDLTQAEAVMDIIHGKTEKSVSLSLDQLRGDLKEQIGHLKKLVLDVAA 172
Query: 272 EIEARLDF-----DDEMPPL---NLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
I LD+ DD +P NL VMD + + + + K+++ G++ AI
Sbjct: 173 HINVVLDYPEEGIDDPLPENLVGNLREVMDTTDIL-------IRSYDKGKMIKEGIKTAI 225
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383
VG+PNVGKSS+LN+ K ERAIVT +AGTTRDVIE V + G+P+ L+DTAGIR+TDD+V
Sbjct: 226 VGKPNVGKSSILNSVLKEERAIVTHVAGTTRDVIEEVVNLKGIPLVLVDTAGIRKTDDLV 285
Query: 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443
E IGVE+S+ + AD+I+ V ED + I++ K +I ++NKID
Sbjct: 286 ENIGVEKSKQLIESADLILFVVDGSRALDEEDMRIHEAIKAEK--------VIGILNKID 337
Query: 444 CAPSAS-------NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRW 496
N+W ++ A+ QGI ++E I + + ++
Sbjct: 338 IREDIDLSPLTKINKWLEI----------SAIKNQGIDEMEEEIYNHIIEENVEDSSQKI 387
Query: 497 AV-NQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSN 555
+ N R L +TK+++ + +IE LP+D +D++ A +L +++GE SE++L +
Sbjct: 388 TITNIRHKSALEKTKQSIENIFETIENGLPMDLMAVDIKGALDSLSEVTGEISSEDLLDH 447
Query: 556 IFGKFCIGK 564
IF FC+GK
Sbjct: 448 IFSNFCVGK 456
>gi|418139369|ref|ZP_12776199.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13338]
gi|353905612|gb|EHE81035.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13338]
Length = 457
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 274/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTESFAIAQKIFK----------GKDLSQVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I GL + A + N R
Sbjct: 346 --ETSKLP---EDVIRISVLKNQNIDKIEERINNFFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|419782757|ref|ZP_14308555.1| tRNA modification GTPase TrmE [Streptococcus oralis SK610]
gi|383182970|gb|EIC75518.1| tRNA modification GTPase TrmE [Streptococcus oralis SK610]
Length = 457
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 274/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGADSFAIAQKIFK----------GKDLSQVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPQTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D P A
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------YTNRIILLNKTDL-PEA 344
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
+ D + + Q I +E I + GL + A + N R
Sbjct: 345 I----ETSELPEDVIRISVLKNQNIDKIEERINDLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|148545139|ref|YP_001272509.1| tRNA modification GTPase TrmE [Lactobacillus reuteri DSM 20016]
gi|184154471|ref|YP_001842812.1| tRNA modification GTPase TrmE [Lactobacillus reuteri JCM 1112]
gi|148532173|gb|ABQ84172.1| tRNA modification GTPase trmE [Lactobacillus reuteri DSM 20016]
gi|183225815|dbj|BAG26332.1| thiophene and furan oxidation protein ThdF [Lactobacillus reuteri
JCM 1112]
Length = 462
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 176/476 (36%), Positives = 268/476 (56%), Gaps = 24/476 (5%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
TIAAI T +G G + I+R+SG AV + R++K G + +H + Y
Sbjct: 7 DTIAAISTPVG--EGGISIIRISGDDAVKVAQRIYK----------GKNLAKVATHTINY 54
Query: 153 GVVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
G ++D + VDEV+ M AP +YTREDV+E+ CHG + R+L+ L GA +A+P
Sbjct: 55 GHIVDPDTDQEVDEVMVSVMRAPHTYTREDVIEINCHGGLLATNRILQLVLSFGARMAEP 114
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGRLDLSQ+E V LI AK+ + AL + G S L+ ++R +++L
Sbjct: 115 GEFTKRAFLNGRLDLSQSEAVMDLIRAKTDKSMKVALNQLDGDLSRLIRNLRQDILDVLA 174
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D + + L+ +K + Q ++ L+TA K+L+ GL AI+G+PNV
Sbjct: 175 QVEVNIDYPEYDAVEEMTTKLLKEKAADIQQRIQGLLKTAKQGKVLRDGLATAIIGQPNV 234
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN+ ++AIVT +AGTTRDVIE V V GVP+ L+DTAGIR+T+D VEKIGVE
Sbjct: 235 GKSSLLNSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAGIRDTNDQVEKIGVE 294
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS AD++++ + + + T ED +LL + ++ I+++NK D
Sbjct: 295 RSRKALGAADLVLLLIDSSNKLTDEDRQLLEATKDKQR--------IIILNKTDLPRKVD 346
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCEQLMR 508
K+ + + T V +G+ L I + I + V N R L +
Sbjct: 347 LAELKLLAGKSAVIETSIVNYEGMDQLGEQIGHMFFNEGIESNQNNVMVTNARHIGLLHQ 406
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+AL + I + +P+D ID+ LG+I+G+ +E+L +F +FC+GK
Sbjct: 407 ANDALSDVLKGINDGMPVDLVQIDMTRCWELLGEITGDSYQDELLDQLFSQFCLGK 462
>gi|404369605|ref|ZP_10974939.1| tRNA modification GTPase mnmE [Clostridium sp. 7_2_43FAA]
gi|226914451|gb|EEH99652.1| tRNA modification GTPase mnmE [Clostridium sp. 7_2_43FAA]
Length = 459
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 189/482 (39%), Positives = 284/482 (58%), Gaps = 35/482 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T+IG G + I+R+SG A++IV ++F+ SG ++ +
Sbjct: 4 FDTICAISTAIG--EGGIAIIRVSGDEALEIVSKIFRA-------KSGKDIRDMKTYTMR 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D +++DEV+ M P+S+T ED VE+ CHG +VL ++AGA +A+
Sbjct: 55 YGHIVDIDKEDLIDEVIISYMKGPKSFTAEDTVEINCHGGVTSTNKVLEMVIKAGARIAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI+AK+ A +AL G S + +R + +L
Sbjct: 115 PGEFTKRAFLNGRIDLSQAEAVMDLITAKTELAMKSALMQSTGSLSKKINKLREYLLNVL 174
Query: 271 TEIEARLDF---DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
IE +DF D+E+ P V D + D+ L+ A+ K+++ GL +AIVG+P
Sbjct: 175 ALIEYAVDFTEDDEEVDPTIPLRVKDSLEKACDDMSKLLKGADEGKIIRDGLSLAIVGKP 234
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN K +RAIVT+IAGTTRDVIE + + G+PV ++DTAGIRET+DIVEKIG
Sbjct: 235 NVGKSSLLNVLLKEKRAIVTDIAGTTRDVIEEYINLDGIPVKIIDTAGIRETEDIVEKIG 294
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VE+S+ AD++++ + + ED E++ I+ NK S I+++NKID
Sbjct: 295 VEKSKEKINEADLVLLVLDSSRELDKEDIEIIEAIK-NKNS-------IVLLNKIDL--- 343
Query: 448 ASNEWNK-VGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
N+ +K + N+F + + A GI L+ I + +I + N R + L
Sbjct: 344 -ENKLDKSLLNNFENIIKISAKEDVGIDGLKNEIKNMFFNGKIDSES-LIVSNSRHKQAL 401
Query: 507 MRTKE----ALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCI 562
+R KE AL+R+K++ E LD +I + A ALG+I+G ++ E++++ IF +FC
Sbjct: 402 IRAKENCDDALIRVKNN---EF-LDLISIYVTAALKALGEITGSELEEDLVNKIFKEFCC 457
Query: 563 GK 564
GK
Sbjct: 458 GK 459
>gi|223937602|ref|ZP_03629505.1| tRNA modification GTPase TrmE [bacterium Ellin514]
gi|223893765|gb|EEF60223.1| tRNA modification GTPase TrmE [bacterium Ellin514]
Length = 457
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 185/472 (39%), Positives = 272/472 (57%), Gaps = 21/472 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T +G G + ++RLSG A+ I + F+PV K SS + S PT H + YG
Sbjct: 6 TIAAIATPLG--EGGLAVIRLSGREALSIADKSFQPVGK----SSINPSAAPT-HTIHYG 58
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
++ RHG VDEVL M APR+ TREDVVE+ CHG + + VL LE GA LA+PGE
Sbjct: 59 RII-RHGQSVDEVLLAVMRAPRTLTREDVVEITCHGGLLPAKLVLDTVLENGARLAEPGE 117
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGR+DL+QAE V LI A++ A AA + G S + ++R ++ L +
Sbjct: 118 FTKRAFLNGRIDLAQAEAVADLIHARTELALTAANEQLAGKLSQRINALRDDMVKTLAHV 177
Query: 274 EARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
EA +DF D+++ P ++ ++ + +E L T+N ++L+ G++ AI+GRPN GKS
Sbjct: 178 EAHIDFPDEDISPDTKVKLIGRLERGLEFMEELLRTSNEGQILRRGIRAAIIGRPNAGKS 237
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLN +RAIV+ I GTTRD IE + V G+P+ +DTAG+RE D +E G+ RS
Sbjct: 238 SLLNQLLGRDRAIVSHIPGTTRDTIEETANVRGLPIVFVDTAGLREAGDEIEVEGIRRSR 297
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
A+ I+ + A + T D L K+ ILV NK+D P+ +
Sbjct: 298 ETLSKAEFILHVLDASEPLTMADENYLAEFSDKKR--------ILVRNKMDL-PAKLDLQ 348
Query: 453 NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEA 512
+ V C ++G+GI+ L+ AI +V +I A + +N R E L R + A
Sbjct: 349 TGIHAPV---VEVCCLSGKGIETLKDAIKSMVWAGEIRAEMLQVMINSRHQEALNRARSA 405
Query: 513 LVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
R ++++ + L+ +DLR A A+G+I G+ +E++L +IF +FCIGK
Sbjct: 406 TQRTITALKGDETLELVAMDLRIAVNAVGEIVGKTTTEDILDSIFSQFCIGK 457
>gi|450078461|ref|ZP_21851008.1| tRNA modification GTPase TrmE [Streptococcus mutans N3209]
gi|449210004|gb|EMC10492.1| tRNA modification GTPase TrmE [Streptococcus mutans N3209]
Length = 455
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 173/476 (36%), Positives = 271/476 (56%), Gaps = 29/476 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVR+SG A+ I+ ++FK G SH +
Sbjct: 6 FDTITAIATPLG--EGAIGIVRISGSKALAIIKKIFK----------GKNLDDVPSHTIN 53
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ +G ++DEV+ M AP+++TREDV+E+ HG +L+ L +GA +A P
Sbjct: 54 YGHIVE-NGAIIDEVMVSVMRAPKTFTREDVIEINTHGGVAVTNEILQLVLRSGARMADP 112
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A+ + G S+L+ + R + + L
Sbjct: 113 GEFTKRAFLNGRVDLAQAEAVMDLIRAKTDKAMAVAVQQLDGSLSNLINNTRQEILNTLA 172
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + L+ +K + N L+TA K+L+ GL AI+GRPNV
Sbjct: 173 QVEVNIDYPEYDDVEEMTTALMREKTQEFETLLTNLLKTARRGKILREGLSTAIIGRPNV 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGVE
Sbjct: 233 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVE 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL Q++ + ++++NK D
Sbjct: 293 RSKKALEEADLVLLVLNSAEKLTDQDRTLLEISQNSNR--------LILLNKTDLPEQIE 344
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLH-QIPAGGRRWAVNQRQCEQLMR 508
E D + + Q I +E I K+ + I + N R + +
Sbjct: 345 TEQLP-----EDCIKISVIKNQNIDVIEERINKLFFDNAAIVEKDATYLSNARHISLIEK 399
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 400 ALKSLQAVNDGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 455
>gi|270292694|ref|ZP_06198905.1| thiophene and furan oxidation protein ThdF [Streptococcus sp. M143]
gi|270278673|gb|EFA24519.1| thiophene and furan oxidation protein ThdF [Streptococcus sp. M143]
Length = 475
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 273/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 24 FDTIVAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSKVASHTLN 71
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 72 YGHIVDPQTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 131
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 132 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 191
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 192 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 251
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 252 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 311
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D P A
Sbjct: 312 ERSKKALKEADLVLLVLNASEQLTAQDRQLLEISQ--------DTNRIILLNKTDL-PEA 362
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
+ D + + Q I +E I + GL + A + N R
Sbjct: 363 I----ETSELPEDVIRISVLKNQNIDKIEERINDLFFENAGLVEQDA---TYLSNARHIS 415
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 416 LIKKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 475
>gi|331266427|ref|YP_004326057.1| tRNA modification GTPase TrmE [Streptococcus oralis Uo5]
gi|326683099|emb|CBZ00717.1| tRNA modification GTPase TrmE [Streptococcus oralis Uo5]
Length = 457
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 276/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPQTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTREFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + ++D +LL Q T I+++NK D P A
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLAAQDRQLLEISQ--------DTNRIILLNKTDL-PEA 344
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKI----VGLHQIPAGGRRWAVNQRQCE 504
E +++ D + + Q I +E I + GL + A + N R
Sbjct: 345 I-ETSEIP---EDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|418166801|ref|ZP_12803457.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17971]
gi|353830397|gb|EHE10527.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17971]
Length = 457
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 276/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + IV ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIVQKIFK----------GKDLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ ++R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 346 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + ++ +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLKLGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|168483087|ref|ZP_02708039.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC1873-00]
gi|418162069|ref|ZP_12798756.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17328]
gi|418175834|ref|ZP_12812431.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41437]
gi|418218760|ref|ZP_12845427.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae NP127]
gi|418238588|ref|ZP_12865143.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419459859|ref|ZP_13999792.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA02270]
gi|419462177|ref|ZP_14002087.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA02714]
gi|419525764|ref|ZP_14065327.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA14373]
gi|172043445|gb|EDT51491.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC1873-00]
gi|353828452|gb|EHE08592.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17328]
gi|353842402|gb|EHE22449.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41437]
gi|353875415|gb|EHE55267.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae NP127]
gi|353894338|gb|EHE74080.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|379532885|gb|EHY98109.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA02270]
gi|379533023|gb|EHY98246.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA02714]
gi|379558457|gb|EHZ23491.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA14373]
Length = 457
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 275/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSQVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPLTGKVMDEVMIGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 346 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|227364302|ref|ZP_03848395.1| tRNA modification GTPase TrmE [Lactobacillus reuteri MM2-3]
gi|325683501|ref|ZP_08163017.1| tRNA modification GTPase TrmE [Lactobacillus reuteri MM4-1A]
gi|227070615|gb|EEI08945.1| tRNA modification GTPase TrmE [Lactobacillus reuteri MM2-3]
gi|324977851|gb|EGC14802.1| tRNA modification GTPase TrmE [Lactobacillus reuteri MM4-1A]
Length = 477
Score = 295 bits (755), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 176/475 (37%), Positives = 268/475 (56%), Gaps = 24/475 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T +G G + I+R+SG AV + R++K G + +H + YG
Sbjct: 23 TIAAISTPVG--EGGISIIRISGDDAVKVAQRIYK----------GKNLAKVATHTINYG 70
Query: 154 VVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D + VDEV+ M AP +YTREDV+E+ CHG + R+L+ L GA +A+PG
Sbjct: 71 HIVDPDTDQEVDEVMVSVMRAPHTYTREDVIEINCHGGLLATNRILQLVLSFGARMAEPG 130
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGRLDLSQ+E V LI AK+ + AL + G S L+ ++R +++L +
Sbjct: 131 EFTKRAFLNGRLDLSQSEAVMDLIRAKTDKSMKVALNQLDGDLSRLIRNLRQDILDVLAQ 190
Query: 273 IEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+E +D+ D + + L+ +K + Q ++ L+TA K+L+ GL AI+G+PNVG
Sbjct: 191 VEVNIDYPEYDAVEEMTTKLLKEKAADIQQRIQGLLKTAKQGKVLRDGLATAIIGQPNVG 250
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLN+ ++AIVT +AGTTRDVIE V V GVP+ L+DTAGIR+T+D VEKIGVER
Sbjct: 251 KSSLLNSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAGIRDTNDQVEKIGVER 310
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S AD++++ + + + T ED +LL + ++ I+++NK D
Sbjct: 311 SRKALGAADLVLLLIDSSNKLTDEDRQLLEATKDKQR--------IIILNKTDLPRKVDL 362
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCEQLMRT 509
K+ + + T V +G+ L I + I + V N R L +
Sbjct: 363 AELKLLAGKSAVIETSIVNYEGMDQLGEQIGHMFFNEGIESNQNNVMVTNARHIGLLHQA 422
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+AL + I + +P+D ID+ LG+I+G+ +E+L +F +FC+GK
Sbjct: 423 NDALSDVLKGINDGMPVDLVQIDMTRCWELLGEITGDSYQDELLDQLFSQFCLGK 477
>gi|419448659|ref|ZP_13988656.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 4075-00]
gi|379623717|gb|EHZ88350.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 4075-00]
Length = 457
Score = 295 bits (755), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 274/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPQTEKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLKTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I++INK D P A
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILINKTDL-PEA 344
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
+ D + + Q I +E I + GL + A + N R
Sbjct: 345 I----ETSELPEDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|405761134|ref|YP_006701730.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SPNA45]
gi|404278023|emb|CCM08597.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SPNA45]
Length = 457
Score = 295 bits (755), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 275/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ ++R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKTLKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 346 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|457095196|gb|EMG25691.1| GTPase and tRNA-U34 5-formylation enzyme [Streptococcus parauberis
KRS-02083]
Length = 488
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 176/480 (36%), Positives = 271/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+DI VFK G SH +
Sbjct: 37 FDTITAISTPLG--EGAIGIVRLSGSQALDIAKSVFK----------GKDLASVASHTIN 84
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG +LD ++DEV+ M P+++TREDVVE+ HG +L+ ++ GA +A+
Sbjct: 85 YGHILDPDKDEILDEVMVSVMREPKTFTREDVVEINTHGGIAVTNEILQLLIKHGARMAE 144
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G L+ + R + + L
Sbjct: 145 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLKQLIDATRQEILNTL 204
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +EN L TA K+L+ GL AI+GRPN
Sbjct: 205 AQVEVNIDYPEYDDVEEMTTALMREKTQEFQTLLENLLRTARRGKILREGLSTAIIGRPN 264
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+IAGTTRDVIE V + GVP+ L+DTAGIR+T+DIVEKIGV
Sbjct: 265 VGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRDTEDIVEKIGV 324
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D LL+ Q + + I+++NK D
Sbjct: 325 ERSKKALNEADLVLLVLNASEKLTDQDHILLDLSQDSNR--------IILLNKTDLEVQI 376
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
+ +D++ + + I +E I ++ GL + A + N R
Sbjct: 377 EKDQLP-----SDYIEISVLNNENIDQIEDRINQLFFDNAGLVEHDA---TYLSNARHIS 428
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + + +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 429 LIEKAVQSLQAVNDGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 488
>gi|421488706|ref|ZP_15936094.1| tRNA modification GTPase TrmE [Streptococcus oralis SK304]
gi|400367923|gb|EJP20938.1| tRNA modification GTPase TrmE [Streptococcus oralis SK304]
Length = 457
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 178/481 (37%), Positives = 275/481 (57%), Gaps = 37/481 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPQTGKVMDEVMIGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFINGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTKEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKI----VGLHQIPAGGRRWAVNQRQC 503
+ ++V +V Q I +E I + GL + A + N R
Sbjct: 346 ET------SELPENVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHI 396
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+G
Sbjct: 397 SLIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLG 456
Query: 564 K 564
K
Sbjct: 457 K 457
>gi|373464835|ref|ZP_09556347.1| tRNA modification GTPase TrmE [Lactobacillus kisonensis F0435]
gi|371761840|gb|EHO50427.1| tRNA modification GTPase TrmE [Lactobacillus kisonensis F0435]
Length = 464
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 175/479 (36%), Positives = 269/479 (56%), Gaps = 28/479 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG + IVR+SG A+D+ ++++ G + S+
Sbjct: 8 FDTIAAIST----PPGEGGISIVRISGEEALDVAKKIYR----------GKNLDKVASNT 53
Query: 150 VEYGVVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D N +DEV+ M AP +YT ED+VE+ CHG V R+L+ L GA +
Sbjct: 54 INYGHIVDPETNEEIDEVMLSVMRAPHTYTEEDIVEINCHGGIVATNRILQLVLSTGARM 113
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQ+E V LI AK+ + AA++ + G S L+ +R ++
Sbjct: 114 AEPGEFTKRAFLNGRIDLSQSEAVMDLIEAKTDRSMKAAISQLDGNLSHLIKHLRKDILD 173
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L ++E +D+ D++ + L+ +K + + L TA K+L+ GL +I+GR
Sbjct: 174 VLAQVEVNIDYPEYDDVETMTSKLLREKATDVHARIVQLLSTAKQGKILREGLATSIIGR 233
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN ++AIVT++ GTTRDV+E V V GVP+ L+DTAGIR+T D VEKI
Sbjct: 234 PNVGKSSLLNNLLHEDKAIVTDVPGTTRDVLEEYVNVRGVPLKLVDTAGIRDTQDKVEKI 293
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GV+RS AD++++ ++A + T ED +LL ++ ++ I+V+NK D
Sbjct: 294 GVDRSRKAIDSADLVLLVLNASEALTDEDKKLLAATKAKQR--------IIVLNKTDLPT 345
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCEQ 505
K + + + T A+ G+ LE I + I V N R
Sbjct: 346 KIELTQLKAITNGKNIISTSAIKANGLSQLEELIANMFFNEGIETSQNDIMVTNARHIGL 405
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + K AL + ++ E+P+D ID+ LG+I+G+ +E++ +F +FC+GK
Sbjct: 406 LNQAKSALEDVIKGLDAEMPVDLVQIDMTRCWDFLGEITGDSYQDELIDQLFSQFCLGK 464
>gi|222152198|ref|YP_002561358.1| tRNA modification GTPase TrmE [Macrococcus caseolyticus JCSC5402]
gi|222121327|dbj|BAH18662.1| tRNA modification GTPase TrmE [Macrococcus caseolyticus JCSC5402]
Length = 454
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 180/459 (39%), Positives = 264/459 (57%), Gaps = 24/459 (5%)
Query: 111 IVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGN-VVDEVLAV 169
IVRLSG A+ I +++K K + S SH + YG ++D N +++EV+
Sbjct: 15 IVRLSGNDAISIADKLYKG---KHQLSD------VASHTINYGHIIDPASNEIIEEVMVA 65
Query: 170 PMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQA 229
M APR+YTRED+VE+ CHG + + RVL L GA LA+PGEFT RAFLNGR+DLSQA
Sbjct: 66 VMRAPRTYTREDIVEINCHGGIMTVNRVLELALTNGARLAEPGEFTKRAFLNGRIDLSQA 125
Query: 230 ENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDF--DDEMPPLN 287
E I +K+ A+ A+ I+G S L+ +R +E+L ++E +D+ D++
Sbjct: 126 EATMDFIRSKTDRASRVAMQQIEGRLSVLIKGLRQSILEILAQVEVNIDYPEYDDVEEAT 185
Query: 288 LNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVT 347
+M++ + + N L+TAN K+L+ GL IVG+PNVGKSS+LN + +AIVT
Sbjct: 186 NTFLMEEARKIEGSITNLLQTANQGKILREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVT 245
Query: 348 EIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSA 407
EIAGTTRDV+E V V GVP+ L+DTAGIRET+DIVEKIGVERS AD+I+ ++
Sbjct: 246 EIAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSREALKKADLILYVLNN 305
Query: 408 VDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNK--VGNSFNDHVFT 465
+ T ED +L I++ +I++INK D E K VGN+ V T
Sbjct: 306 NEILTEEDYKLAEIIKNE--------DVIVIINKTDLETKLDLEEVKTMVGNA--PIVRT 355
Query: 466 CAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELP 525
++ QGI++LE I + ++ + N R L K ++ S+ E +P
Sbjct: 356 SMLSQQGIEELEEQIRTLFFAGEVSNQDMTYVSNARHISLLKSAKTSIGDAISAAELGVP 415
Query: 526 LDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+D IDL LG++ GE + + ++ +F +FC+GK
Sbjct: 416 VDMIQIDLIKTWELLGEVIGESVDDGLIDQLFSQFCLGK 454
>gi|419778442|ref|ZP_14304333.1| tRNA modification GTPase TrmE [Streptococcus oralis SK10]
gi|383187281|gb|EIC79736.1| tRNA modification GTPase TrmE [Streptococcus oralis SK10]
Length = 457
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 274/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLNQVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPQTGKVMDEVMIGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D P A
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDL-PEA 344
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
+ D + + Q I +E I + GL + A + N R
Sbjct: 345 I----ETSELPEDIIRISVLKNQNIDKIEERINDLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|421277307|ref|ZP_15728127.1| tRNA modification GTPase TrmE [Streptococcus mitis SPAR10]
gi|395876588|gb|EJG87664.1| tRNA modification GTPase TrmE [Streptococcus mitis SPAR10]
Length = 457
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 178/480 (37%), Positives = 275/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA +A+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLKTARRGKILREGIATAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDVVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D P A
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDL-PEA 344
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKI----VGLHQIPAGGRRWAVNQRQCE 504
+ +D + + Q I +E I + GL + A + N R
Sbjct: 345 I----ETSELPDDIIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|307706532|ref|ZP_07643339.1| tRNA modification GTPase TrmE [Streptococcus mitis SK321]
gi|307617987|gb|EFN97147.1| tRNA modification GTPase TrmE [Streptococcus mitis SK321]
Length = 457
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 273/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTESFAIAQKIFK----------GKDLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSELINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTIEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D P A
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------ETNRIILLNKTDL-PEA 344
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
+ D + + Q I +E I + GL + A + N R
Sbjct: 345 I----ETSELPEDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|168487704|ref|ZP_02712212.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC1087-00]
gi|169834150|ref|YP_001694460.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae
Hungary19A-6]
gi|225861000|ref|YP_002742509.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae
Taiwan19F-14]
gi|298230463|ref|ZP_06964144.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298255333|ref|ZP_06978919.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298502963|ref|YP_003724903.1| tRNA modification GTP-binding protein TrmE [Streptococcus
pneumoniae TCH8431/19A]
gi|387788201|ref|YP_006253269.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae ST556]
gi|410476574|ref|YP_006743333.1| thiophene and furan oxidation GTP-binding protein ThdF
[Streptococcus pneumoniae gamPNI0373]
gi|417312691|ref|ZP_12099403.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA04375]
gi|417696213|ref|ZP_12345392.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47368]
gi|417698568|ref|ZP_12347740.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41317]
gi|418082944|ref|ZP_12720145.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44288]
gi|418085088|ref|ZP_12722272.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47281]
gi|418091510|ref|ZP_12728653.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44452]
gi|418093964|ref|ZP_12731092.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA49138]
gi|418100850|ref|ZP_12737935.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 7286-06]
gi|418107423|ref|ZP_12744461.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41410]
gi|418109989|ref|ZP_12747014.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA49447]
gi|418119562|ref|ZP_12756514.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA18523]
gi|418141722|ref|ZP_12778535.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13455]
gi|418150489|ref|ZP_12787239.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA14798]
gi|418152876|ref|ZP_12789615.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA16121]
gi|418157373|ref|ZP_12794089.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA16833]
gi|418164462|ref|ZP_12801133.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17371]
gi|418169129|ref|ZP_12805773.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA19077]
gi|418171230|ref|ZP_12807856.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA19451]
gi|418184843|ref|ZP_12821390.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47283]
gi|418196052|ref|ZP_12832531.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47688]
gi|418197846|ref|ZP_12834309.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47778]
gi|418221075|ref|ZP_12847729.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47751]
gi|418223198|ref|ZP_12849839.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 5185-06]
gi|418227721|ref|ZP_12854339.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 3063-00]
gi|419422859|ref|ZP_13963074.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA43264]
gi|419425043|ref|ZP_13965242.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 7533-05]
gi|419426997|ref|ZP_13967180.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 5652-06]
gi|419429177|ref|ZP_13969344.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA11856]
gi|419435889|ref|ZP_13975981.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 8190-05]
gi|419438124|ref|ZP_13978194.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13499]
gi|419444763|ref|ZP_13984778.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA19923]
gi|419446907|ref|ZP_13986912.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 7879-04]
gi|419451359|ref|ZP_13991345.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae EU-NP02]
gi|419453417|ref|ZP_13993390.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae EU-NP03]
gi|419489054|ref|ZP_14028804.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44386]
gi|419501774|ref|ZP_14041459.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47628]
gi|419505948|ref|ZP_14045609.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA49194]
gi|419510643|ref|ZP_14050286.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae NP141]
gi|419518813|ref|ZP_14058420.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA08825]
gi|419528437|ref|ZP_14067979.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17719]
gi|419530375|ref|ZP_14069904.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA40028]
gi|421212887|ref|ZP_15669848.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070108]
gi|421215248|ref|ZP_15672176.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070109]
gi|421272679|ref|ZP_15723523.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SPAR55]
gi|421288235|ref|ZP_15738998.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA58771]
gi|205415808|sp|B1IBH5.1|MNME_STRPI RecName: Full=tRNA modification GTPase MnmE
gi|168996652|gb|ACA37264.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae
Hungary19A-6]
gi|183569534|gb|EDT90062.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC1087-00]
gi|225727603|gb|ACO23454.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae
Taiwan19F-14]
gi|298238558|gb|ADI69689.1| tRNA modification GTP-binding protein TrmE [Streptococcus
pneumoniae TCH8431/19A]
gi|327389399|gb|EGE87744.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA04375]
gi|332200613|gb|EGJ14685.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41317]
gi|332201488|gb|EGJ15558.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47368]
gi|353756857|gb|EHD37456.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44288]
gi|353758783|gb|EHD39371.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47281]
gi|353765188|gb|EHD45735.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44452]
gi|353765312|gb|EHD45857.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA49138]
gi|353771529|gb|EHD52037.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 7286-06]
gi|353779606|gb|EHD60070.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41410]
gi|353782901|gb|EHD63331.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA49447]
gi|353789589|gb|EHD69982.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA18523]
gi|353805973|gb|EHD86247.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13455]
gi|353815621|gb|EHD95836.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA14798]
gi|353817427|gb|EHD97629.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA16121]
gi|353823821|gb|EHE03995.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA16833]
gi|353831474|gb|EHE11602.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17371]
gi|353834971|gb|EHE15067.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA19077]
gi|353835962|gb|EHE16051.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA19451]
gi|353851379|gb|EHE31375.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47283]
gi|353861503|gb|EHE41440.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47688]
gi|353864002|gb|EHE43921.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47778]
gi|353875998|gb|EHE55848.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47751]
gi|353879324|gb|EHE59150.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 5185-06]
gi|353881949|gb|EHE61761.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 3063-00]
gi|379137943|gb|AFC94734.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae ST556]
gi|379538129|gb|EHZ03310.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13499]
gi|379551125|gb|EHZ16220.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA11856]
gi|379564460|gb|EHZ29456.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17719]
gi|379572456|gb|EHZ37413.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA19923]
gi|379573894|gb|EHZ38841.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA40028]
gi|379587385|gb|EHZ52233.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA43264]
gi|379587947|gb|EHZ52794.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44386]
gi|379601009|gb|EHZ65786.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47628]
gi|379607862|gb|EHZ72608.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA49194]
gi|379614447|gb|EHZ79157.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 7879-04]
gi|379615731|gb|EHZ80436.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 8190-05]
gi|379618450|gb|EHZ83125.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 5652-06]
gi|379620372|gb|EHZ85031.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 7533-05]
gi|379623064|gb|EHZ87698.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae EU-NP02]
gi|379627126|gb|EHZ91742.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae EU-NP03]
gi|379632696|gb|EHZ97268.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae NP141]
gi|379641792|gb|EIA06327.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA08825]
gi|395580474|gb|EJG40955.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070108]
gi|395581381|gb|EJG41853.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070109]
gi|395875788|gb|EJG86866.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SPAR55]
gi|395886798|gb|EJG97814.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA58771]
gi|406369519|gb|AFS43209.1| thiophene and furan oxidation GTP-binding protein ThdF
[Streptococcus pneumoniae gamPNI0373]
Length = 457
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 275/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ ++R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 346 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|306825270|ref|ZP_07458612.1| tRNA modification GTPase TrmE [Streptococcus sp. oral taxon 071
str. 73H25AP]
gi|304432706|gb|EFM35680.1| tRNA modification GTPase TrmE [Streptococcus sp. oral taxon 071
str. 73H25AP]
Length = 457
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 178/480 (37%), Positives = 272/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPQTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTAQRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIR+TDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD++++ ++A + T++D +LL Q T I+++NK D
Sbjct: 294 ERSRKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLP--- 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E + D + + Q I +E I + GL + A + N R
Sbjct: 343 --ETIETSELPEDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|449866061|ref|ZP_21779352.1| tRNA modification GTPase TrmE [Streptococcus mutans U2B]
gi|449873364|ref|ZP_21781707.1| tRNA modification GTPase TrmE [Streptococcus mutans 8ID3]
gi|449154118|gb|EMB57733.1| tRNA modification GTPase TrmE [Streptococcus mutans 8ID3]
gi|449263952|gb|EMC61307.1| tRNA modification GTPase TrmE [Streptococcus mutans U2B]
Length = 455
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 173/476 (36%), Positives = 273/476 (57%), Gaps = 29/476 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVR+SG A+ I+ ++FK G +SH +
Sbjct: 6 FDTITAIATPLG--EGAIGIVRISGSKALAIIKKIFK----------GKNLDDVSSHTIN 53
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ +G ++DEV+ M AP+++TREDV+E+ HG +L+ L +GA +A P
Sbjct: 54 YGHIVE-NGAIIDEVMVSVMRAPKTFTREDVIEINTHGGVAVTNEILQLVLRSGARMADP 112
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A+ + G S+L+ + R + + L
Sbjct: 113 GEFTKRAFLNGRVDLAQAEAVMDLIRAKTDKAMAVAVQQLDGSLSNLINNTRQEILNTLA 172
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + L+ +K + N L+TA K+L+ GL AI+GRPNV
Sbjct: 173 QVEVNIDYPEYDDVEEMTTALMREKTQEFETLLTNLLKTARRGKILREGLSTAIIGRPNV 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGVE
Sbjct: 233 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVE 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL Q++ + ++++NK D
Sbjct: 293 RSKKALEEADLVLLVLNSAEKLTDQDRTLLEISQNSNR--------LILLNKTDLP---- 340
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLH-QIPAGGRRWAVNQRQCEQLMR 508
E + D + + Q I +E I K+ + I + N R + +
Sbjct: 341 -EQIETDQLPEDCIKISVIKNQNIDVIEERINKLFFDNAAIVEKDATYLSNARHISLIEK 399
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 400 ALKSLQAVNDGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 455
>gi|417935893|ref|ZP_12579210.1| tRNA modification GTPase TrmE [Streptococcus infantis X]
gi|343402802|gb|EGV15307.1| tRNA modification GTPase TrmE [Streptococcus infantis X]
Length = 457
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 177/480 (36%), Positives = 272/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA +A+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLKTARRGKILREGIATAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDVVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTDQDRQLLEISQ--------DTNRIILLNKTDLPEAI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E D + + Q I +E I + GL + A + N R
Sbjct: 346 ETEELP-----EDIIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|410594432|ref|YP_006951159.1| tRNA modification GTPase MnmE [Streptococcus agalactiae SA20-06]
gi|421532049|ref|ZP_15978422.1| tRNA modification GTPase TrmE [Streptococcus agalactiae STIR-CD-17]
gi|403642772|gb|EJZ03589.1| tRNA modification GTPase TrmE [Streptococcus agalactiae STIR-CD-17]
gi|410518071|gb|AFV72215.1| tRNA modification GTPase MnmE [Streptococcus agalactiae SA20-06]
Length = 458
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 180/481 (37%), Positives = 276/481 (57%), Gaps = 37/481 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVR+SG A+ I ++++ G SH +
Sbjct: 7 FDTIAAISTPLG--EGAIGIVRISGTDALKIASKIYR----------GKDLSAIQSHTLN 54
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N ++DEV+ MLAP+++TREDV+E+ HG +L+ L GA +A+
Sbjct: 55 YGHIVDPDKNEILDEVMLGVMLAPKTFTREDVIEINTHGGIAVTNEILQLILRHGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V LI AK+ A D A+ + G +L+ + R + + L
Sbjct: 115 PGEFTKRAFLNGRVDLTQAEAVMDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQEILNTL 174
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + + L+ +K +EN L TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTITLMREKTQEFQALMENLLRTARRGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIR+TDDIVEKIGV
Sbjct: 235 VGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ +++ + T +D LL + S ES+ I+++NK D
Sbjct: 295 ERSKKALEEADLVLLVLNSSEPLTLQDRSLL------ELSKESNR--IVLLNKTDLPQKI 346
Query: 449 SNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQC 503
N ++V +V + I +E I I G+ + A + N R
Sbjct: 347 E------VNELPENVIPISVLENENIDKIEERINDIFFDNAGMVEHDA---TYLSNARHI 397
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
+ + ++L + +E +P+D +D+ LG+I+G+ EE+++ +F +FC+G
Sbjct: 398 SLIEKAVDSLKAVNEGLELGMPVDLLQVDMTRTWEILGEITGDAAPEELITQLFSQFCLG 457
Query: 564 K 564
K
Sbjct: 458 K 458
>gi|227523332|ref|ZP_03953381.1| tRNA modification GTPase TrmE [Lactobacillus hilgardii ATCC 8290]
gi|227089523|gb|EEI24835.1| tRNA modification GTPase TrmE [Lactobacillus hilgardii ATCC 8290]
Length = 464
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 175/479 (36%), Positives = 272/479 (56%), Gaps = 28/479 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG + IVR+SG A+D+ V++ G + S+
Sbjct: 8 FDTIAAIST----PPGEGGISIVRISGEEALDVAKNVYR----------GKNLDKVASNT 53
Query: 150 VEYGVVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D N VDEV+ M AP +YT+ED++E+ CHG V R+L+ L GA +
Sbjct: 54 INYGHIVDPSTNQEVDEVMLSIMRAPHTYTKEDIIEINCHGGIVATNRILQLVLSNGARM 113
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQ+E V LI AK+ + AA++ + G S L+ +R ++
Sbjct: 114 AEPGEFTKRAFLNGRIDLSQSEAVMDLIEAKTDRSMKAAISQLDGNLSHLIKHLRKDILD 173
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L ++E +D+ D++ + L+ +K + + + L+TA K+L+ GL +I+GR
Sbjct: 174 VLAQVEVNIDYPEYDDVETMTSKLLREKATDVHKRIVQLLQTAKQGKILRDGLATSIIGR 233
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN ++AIVT++ GTTRDV+E V GVP+ L+DTAGIR+T+D VEKI
Sbjct: 234 PNVGKSSLLNHLLHEDKAIVTDVPGTTRDVLEEYANVSGVPLKLIDTAGIRDTNDKVEKI 293
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GV+RS AD++++ ++A + T ED +L++ K+ I+V+NK D
Sbjct: 294 GVDRSRKAINSADLVLLVLNASEPLTEEDRQLIDATNKKKR--------IVVLNKTDLPI 345
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCEQ 505
+ K + + T A+ G++ LE I + I + V N R
Sbjct: 346 KLNLSEIKRLTKAQNIISTSAIKADGLKGLEELISTMFFNEGIASSQNDVVVTNARHIGL 405
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + K AL + ++E +P+D ID+ LG+I+G+ +E++ +F +FC+GK
Sbjct: 406 LNQAKSALEDVLKGLDEGMPVDLVQIDMTRCWDFLGEITGDSYQDELIDQLFSQFCLGK 464
>gi|410494873|ref|YP_006904719.1| tRNA modification GTPase mnmE [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|410440033|emb|CCI62661.1| tRNA modification GTPase mnmE [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
Length = 458
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 177/480 (36%), Positives = 270/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+ I VFK + SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTDALAIAQSVFKE----------KNLEQVASHTIN 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G ++DEV+ MLAP+++TRE+VVE+ HG +L+ + GA +A+
Sbjct: 55 YGHIIDPKTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A A+ + G S L+ R + + L
Sbjct: 115 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +EN L TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 235 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D LL+ Q + + I+++NK D
Sbjct: 295 ERSKKALQEADLVLLVLNASEPLTDQDRSLLHLSQDSNR--------IILLNKTDLEQKI 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E D + +T I +E I ++ GL + A + N R
Sbjct: 347 ELEQLPT-----DLISISVLTNHNIDLIEDRINQLFFDNAGLVEQDA---TYLSNARHIS 398
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + + +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 399 LIEKAVQSLEAVNDGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458
>gi|307709441|ref|ZP_07645898.1| tRNA modification GTPase TrmE [Streptococcus mitis SK564]
gi|307619755|gb|EFN98874.1| tRNA modification GTPase TrmE [Streptococcus mitis SK564]
Length = 457
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 276/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++F+ G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTESFAIAQKIFE----------GKDLNQVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPQTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMKIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + G+P+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGIPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D P A
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------ETNRIILLNKTDL-PEA 344
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 345 I-ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|450132105|ref|ZP_21869844.1| tRNA modification GTPase TrmE [Streptococcus mutans NLML8]
gi|449153426|gb|EMB57104.1| tRNA modification GTPase TrmE [Streptococcus mutans NLML8]
Length = 455
Score = 294 bits (753), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 173/476 (36%), Positives = 272/476 (57%), Gaps = 29/476 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVR+SG A+ I+ ++FK G SH +
Sbjct: 6 FDTITAIATPLG--EGAIGIVRISGSKALAIIKKIFK----------GKNLDDVPSHTIN 53
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ +G ++DEV+ M AP+++TREDV+E+ HG +L+ L +GA +A P
Sbjct: 54 YGHIVE-NGAIIDEVMVSVMRAPKTFTREDVIEINTHGGVAVTNEILQLVLRSGARMADP 112
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A+ + G S+L+ + R + + L
Sbjct: 113 GEFTKRAFLNGRVDLAQAEAVMDLIRAKTDKAMAVAVQQLDGSLSNLINNTRQEILNTLA 172
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + L+ +K + N L+TA K+L+ GL AI+GRPNV
Sbjct: 173 QVEVNIDYPEYDDVEEMTTALMREKTQEFETLLTNLLKTARRGKILREGLSTAIIGRPNV 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGVE
Sbjct: 233 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVE 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL Q++ + ++++NK D
Sbjct: 293 RSKKALEEADLVLLVLNSAEKLTDQDRTLLEISQNSNR--------LILLNKTDLP---- 340
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLH-QIPAGGRRWAVNQRQCEQLMR 508
E + D + + Q I +E I K+ + I + N R + +
Sbjct: 341 -EQIETDQLPEDCIKISVIKNQNIDVIEERINKLFFDNASIVEKDATYLSNTRHISLIEK 399
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 400 ALKSLQAVNDGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 455
>gi|342163676|ref|YP_004768315.1| tRNA modification GTPase TrmE [Streptococcus pseudopneumoniae
IS7493]
gi|341933558|gb|AEL10455.1| tRNA modification GTPase TrmE [Streptococcus pseudopneumoniae
IS7493]
Length = 457
Score = 294 bits (753), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 272/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLRQVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------ETNRIILLNKTDLP--- 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E + D + + Q I +E I + GL + A + N R
Sbjct: 343 --EVIETSELPEDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|421526674|ref|ZP_15973281.1| tRNA modification GTPase TrmE [Fusobacterium nucleatum ChDC F128]
gi|402257231|gb|EJU07706.1| tRNA modification GTPase TrmE [Fusobacterium nucleatum ChDC F128]
Length = 455
Score = 294 bits (753), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 172/480 (35%), Positives = 281/480 (58%), Gaps = 34/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T G G + IVR+SG +++I+ ++FKP K KK S ++ +
Sbjct: 3 LDTIAAISTPRG--EGGISIVRMSGQDSLNILEKIFKP---KNKKVSELKNYS-----IN 52
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG ++D ++VDEVL M AP +YTRED++E+ CHG + +VL L+ GA +A+
Sbjct: 53 YGHIIDNE-HIVDEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVVLKNGARIAEI 111
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V +I K+ + +L ++G + +++ ++L
Sbjct: 112 GEFTKRAFLNGRIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAA 171
Query: 272 EIEARLDF-----DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
I LD+ DD +P NLV D + S ++++ + + + K+++ G++ AI+G+
Sbjct: 172 HINVVLDYPEEGIDDPVPE---NLV-DNLKKASAEIKDLVSSYDKGKIIKDGIKTAIIGK 227
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSS+LN+ + +RAIVT I GTTRD+IE + + G+P+ L+DTAGIR TDDIVE I
Sbjct: 228 PNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENI 287
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVE+S+ + AD+I+ + ED + + I ++K +I ++NKID
Sbjct: 288 GVEKSKELINSADLILYVIDTSREIDEEDFRIYDIINTDK--------VIGILNKIDIKK 339
Query: 447 SAS-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCE 504
+++K+ + A++ GI +LE I K + + ++ + N R
Sbjct: 340 DIDLTKFSKI----EKWIEISALSKIGIDNLENEIYKYIMNENVEDSSQKLVITNVRHKS 395
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L +T +AL+ + +I+ LP+D +D++DA +L +++GE SE++L +IF FC+GK
Sbjct: 396 ALEKTNDALLNIIETIDMGLPMDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455
>gi|15458528|gb|AAK99724.1| Thiophene and furan oxidation protein [Streptococcus pneumoniae R6]
Length = 479
Score = 294 bits (753), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 274/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 28 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLNKVASHTLN 75
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 76 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 135
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 136 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 195
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + L TA K+L+ G+ AI+GRPN
Sbjct: 196 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPN 255
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 256 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 315
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 316 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 367
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 368 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 419
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 420 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDATPDELITQLFSQFCLGK 479
>gi|257127029|ref|YP_003165143.1| tRNA modification GTPase TrmE [Leptotrichia buccalis C-1013-b]
gi|257050968|gb|ACV40152.1| tRNA modification GTPase TrmE [Leptotrichia buccalis C-1013-b]
Length = 455
Score = 294 bits (753), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 173/476 (36%), Positives = 276/476 (57%), Gaps = 26/476 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T G G + I+R+SG + +I+ ++F KK ++ G ++ +
Sbjct: 3 FDTIAAISTPKG--EGGIAIIRISGDKSFEILDKIFI----KKNPNADLGFYK-----LN 51
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG + D +DEV+AV + APRSYT ED+VE+ CHG + +VL L GA A+
Sbjct: 52 YGFIKDGK-KTIDEVMAVRLKAPRSYTCEDIVEINCHGGTLVSEKVLELVLRNGARHAES 110
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAF+NGR+DLSQAE V +I K+ + +L ++G V + +++
Sbjct: 111 GEFTKRAFMNGRIDLSQAEAVMDIIQGKTEKSVSLSLDQLRGDLRDKVNEFKKALLDITA 170
Query: 272 EIEARLDFDDEM--PPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+ LD+ +E PL + L D + + ++ +++ N K ++ G++ IVG+PNV
Sbjct: 171 HVNVVLDYPEEGIDDPLPVEL-RDNLEKVYEEANRLIDSYNTGKKIKEGIKTVIVGKPNV 229
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKS+LLNA ERAIVT IAGTTRDVIE + + G+P+ L+DTAGIR+TDDIVE IGVE
Sbjct: 230 GKSTLLNALLHEERAIVTHIAGTTRDVIEEIINIKGIPLVLVDTAGIRKTDDIVENIGVE 289
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S+ AD++++ + A +ED E++ +I+ N K +I+++NKID +
Sbjct: 290 KSKQFIEKADLVLLVLDASKKLETEDIEVITKIKENNK------KVIVLLNKIDL----N 339
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCEQLMR 508
+ N G + + V A GI+D++ I + + + + N R L +
Sbjct: 340 KKINLEGYNLENIVEISAKDNIGIEDMQEKIYSYIVEEDVENSSEKLIITNIRHKTALEK 399
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
TK+A+ + +I+ LP+D ++DL++A +L +I+GE SE++L ++F FC+GK
Sbjct: 400 TKDAIRNIFETIDMGLPMDLISVDLKEALDSLSEITGEISSEDILDHVFANFCVGK 455
>gi|148988468|ref|ZP_01819915.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP6-BS73]
gi|147926149|gb|EDK77223.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP6-BS73]
Length = 457
Score = 294 bits (753), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 275/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSQVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ ++R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 346 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLIEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|449924165|ref|ZP_21799476.1| tRNA modification GTPase TrmE [Streptococcus mutans 4SM1]
gi|450094568|ref|ZP_21857058.1| tRNA modification GTPase TrmE [Streptococcus mutans W6]
gi|450149580|ref|ZP_21876203.1| tRNA modification GTPase TrmE [Streptococcus mutans 14D]
gi|449163252|gb|EMB66364.1| tRNA modification GTPase TrmE [Streptococcus mutans 4SM1]
gi|449216289|gb|EMC16421.1| tRNA modification GTPase TrmE [Streptococcus mutans W6]
gi|449234418|gb|EMC33430.1| tRNA modification GTPase TrmE [Streptococcus mutans 14D]
Length = 455
Score = 294 bits (753), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 173/476 (36%), Positives = 272/476 (57%), Gaps = 29/476 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVR+SG A+ I+ ++FK G SH +
Sbjct: 6 FDTITAIATPLG--EGAIGIVRISGSKALAIIKKIFK----------GKNLDDVPSHTIN 53
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ +G ++DEV+ M AP+++TREDV+E+ HG +L+ L +GA +A P
Sbjct: 54 YGHIVE-NGAIIDEVMVSVMRAPKTFTREDVIEINTHGGVAVTNEILQLVLRSGARMADP 112
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A+ + G S+L+ + R + + L
Sbjct: 113 GEFTKRAFLNGRVDLAQAEAVMDLIRAKTDKAMAVAVQQLDGSLSNLINNTRQEILNTLA 172
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + L+ +K + N L+TA K+L+ GL AI+GRPNV
Sbjct: 173 QVEVNIDYPEYDDVEEMTTALMREKTQEFENLLTNLLKTARRGKILREGLSTAIIGRPNV 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGVE
Sbjct: 233 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVE 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL Q++ + ++++NK D
Sbjct: 293 RSKKALEEADLVLLVLNSAEKLTDQDRTLLEISQNSNR--------LILLNKTDLP---- 340
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLH-QIPAGGRRWAVNQRQCEQLMR 508
E + D + + Q I +E I K+ + I + N R + +
Sbjct: 341 -EQIETDQLPEDCIKISVIKNQNIDVIEERINKLFFDNAAIVEKDATYLSNARHISLIEK 399
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 400 ALKSLQAVNDGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 455
>gi|19703358|ref|NP_602920.1| tRNA modification GTPase TrmE [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|25009491|sp|Q8RHA2.1|MNME_FUSNN RecName: Full=tRNA modification GTPase MnmE
gi|19713420|gb|AAL94219.1| Thiophene and furan oxidation protein THDF [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 455
Score = 294 bits (753), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 173/480 (36%), Positives = 282/480 (58%), Gaps = 34/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T G G + IVR+SG +++I+ ++FKP K KK S ++ +
Sbjct: 3 LDTIAAISTPRG--EGGISIVRMSGQDSLNILEKIFKP---KNKKVSELKNYS-----IN 52
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG ++D ++VDEVL M AP +YTRED++E+ CHG + +VL L+ GA +A+
Sbjct: 53 YGHIIDNE-HIVDEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVVLKNGARIAEI 111
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V +I K+ + +L ++G + +++ ++L
Sbjct: 112 GEFTKRAFLNGRIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSILDLAA 171
Query: 272 EIEARLDF-----DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
I LD+ DD +P NLV + + S ++++ + + + K+++ G++ AI+G+
Sbjct: 172 HINVVLDYPEEGIDDPVPE---NLV-ENLKKASAEIKDLVSSYDKGKIIKDGIKTAIIGK 227
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSS+LN+ + +RAIVT I GTTRD+IE + + G+P+ L+DTAGIR TDDIVE I
Sbjct: 228 PNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENI 287
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVE+S+ + AD+I+ + ED + + I ++K +I ++NKID
Sbjct: 288 GVEKSKELINSADLILYVIDTSREIDEEDFRIYDIINTDK--------VIGILNKIDIKK 339
Query: 447 SAS-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCE 504
+ +++ K+ + A++ GI +LE I K + I ++ + N R
Sbjct: 340 EINLSKFPKI----EKWIEISALSKLGIDNLENEIYKYIMNENIEDSSQKLVITNVRHKS 395
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L +T EAL+ + +I+ LP+D +D++DA +L +++GE SE++L +IF FC+GK
Sbjct: 396 ALEKTNEALLNIIETIDMGLPMDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455
>gi|449910687|ref|ZP_21794826.1| tRNA modification GTPase TrmE [Streptococcus mutans OMZ175]
gi|450129367|ref|ZP_21869188.1| tRNA modification GTPase TrmE [Streptococcus mutans U2A]
gi|449228405|gb|EMC27775.1| tRNA modification GTPase TrmE [Streptococcus mutans U2A]
gi|449259285|gb|EMC56824.1| tRNA modification GTPase TrmE [Streptococcus mutans OMZ175]
Length = 455
Score = 294 bits (753), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 173/476 (36%), Positives = 272/476 (57%), Gaps = 29/476 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVR+SG A+ I+ ++FK G SH +
Sbjct: 6 FDTITAIATPLG--EGAIGIVRISGSKALAIIKKIFK----------GKNLNDVPSHTIN 53
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ +G ++DEV+ M AP+++TREDV+E+ HG +L+ L +GA +A P
Sbjct: 54 YGHIVE-NGAIIDEVMVSVMRAPKTFTREDVIEINTHGGVAVTNEILQLVLRSGARMADP 112
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A+ + G S+L+ + R + + L
Sbjct: 113 GEFTKRAFLNGRVDLAQAEAVMDLIRAKTDKAMAVAVQQLDGSLSNLINNTRQEILNTLA 172
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + L+ +K + N L+TA K+L+ GL AI+GRPNV
Sbjct: 173 QVEVNIDYPEYDDVEEMTTALMREKTQEFETLLTNLLKTARRGKILREGLSTAIIGRPNV 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGVE
Sbjct: 233 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVE 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL Q++ + ++++NK D
Sbjct: 293 RSKKALEEADLVLLVLNSAEKLTDQDRTLLEISQNSNR--------LILLNKTDLP---- 340
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLH-QIPAGGRRWAVNQRQCEQLMR 508
E + D + + Q I +E I K+ + I + N R + +
Sbjct: 341 -EQIETDQLPEDCIKISVIKNQNIDVIEERINKLFFDNAAIVEKDATYLSNARHISLIEK 399
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 400 ALKSLQAVNDGLEVGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 455
>gi|116516848|ref|YP_816380.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae D39]
gi|161410748|ref|NP_358514.2| tRNA modification GTPase TrmE [Streptococcus pneumoniae R6]
gi|168491911|ref|ZP_02716054.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC0288-04]
gi|421266038|ref|ZP_15716921.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SPAR27]
gi|421298479|ref|ZP_15749167.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA60080]
gi|32171825|sp|Q8DPZ8.2|MNME_STRR6 RecName: Full=tRNA modification GTPase MnmE
gi|122278734|sp|Q04KR8.1|MNME_STRP2 RecName: Full=tRNA modification GTPase MnmE
gi|116077424|gb|ABJ55144.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae D39]
gi|183573804|gb|EDT94332.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC0288-04]
gi|395868774|gb|EJG79891.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SPAR27]
gi|395902435|gb|EJH13368.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA60080]
Length = 457
Score = 294 bits (753), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 274/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 346 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDATPDELITQLFSQFCLGK 457
>gi|450044651|ref|ZP_21837987.1| tRNA modification GTPase TrmE [Streptococcus mutans N34]
gi|449201375|gb|EMC02374.1| tRNA modification GTPase TrmE [Streptococcus mutans N34]
Length = 455
Score = 294 bits (753), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 173/476 (36%), Positives = 272/476 (57%), Gaps = 29/476 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVR+SG A+ I+ ++FK G SH +
Sbjct: 6 FDTITAIATPLG--EGAIGIVRISGSKALAIIKKIFK----------GKNLDDVPSHTIN 53
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ +G ++DEV+ M AP+++TREDV+E+ HG +L+ L +GA +A P
Sbjct: 54 YGHIVE-NGAIIDEVMVSVMRAPKTFTREDVIEINTHGGVAVTNEILQLVLRSGARMADP 112
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A+ + G S+L+ + R + + L
Sbjct: 113 GEFTKRAFLNGRVDLAQAEAVMDLIRAKTDKAMAVAVQQLDGSLSNLINNTRQEILNTLA 172
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + L+ +K + N L+TA K+L+ GL AI+GRPNV
Sbjct: 173 QVEVNIDYPEYDDVEEMTTALMREKTQEFETLLTNLLKTARRGKILREGLSTAIIGRPNV 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGVE
Sbjct: 233 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVE 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL Q++ + ++++NK D
Sbjct: 293 RSKKALEEADLVLLVLNSAEKLTDQDRTLLEISQNSNR--------LILLNKTDLP---- 340
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLH-QIPAGGRRWAVNQRQCEQLMR 508
E + D + + Q I +E I K+ + I + N R + +
Sbjct: 341 -EQIETDQLPEDCIKISVIKNQNIDVIEERINKLFFDNASIVEKDATYLSNARHISLIEK 399
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 400 ALKSLQAVNDGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 455
>gi|387785999|ref|YP_006251095.1| tRNA modification GTPase TrmE [Streptococcus mutans LJ23]
gi|450117731|ref|ZP_21865087.1| tRNA modification GTPase TrmE [Streptococcus mutans ST1]
gi|379132400|dbj|BAL69152.1| tRNA modification GTPase TrmE [Streptococcus mutans LJ23]
gi|449225816|gb|EMC25390.1| tRNA modification GTPase TrmE [Streptococcus mutans ST1]
Length = 455
Score = 294 bits (753), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 173/476 (36%), Positives = 272/476 (57%), Gaps = 29/476 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVR+SG A+ I+ ++FK G SH +
Sbjct: 6 FDTITAIATPLG--EGAIGIVRISGSKALAIIKKIFK----------GKNLDDVPSHTIN 53
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ +G ++DEV+ M AP+++TREDV+E+ HG +L+ L +GA +A P
Sbjct: 54 YGHIVE-NGAIIDEVMVSVMRAPKTFTREDVIEINTHGGVAVTNEILQLVLRSGARMADP 112
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A+ + G S+L+ + R + + L
Sbjct: 113 GEFTKRAFLNGRVDLAQAEAVMDLIRAKTDKAMAVAVQQLDGSLSNLINNTRQEILNTLA 172
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + L+ +K + N L+TA K+L+ GL AI+GRPNV
Sbjct: 173 QVEVNIDYPEYDDVEEMTTALMREKTQEFETLLTNLLKTARRGKILREGLSTAIIGRPNV 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGVE
Sbjct: 233 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVE 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL Q++ + ++++NK D
Sbjct: 293 RSKKALEEADLVLLVLNSAEKLTDQDRTLLEISQNSNR--------LILLNKTDLP---- 340
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLH-QIPAGGRRWAVNQRQCEQLMR 508
E + D + + Q I +E I K+ + I + N R + +
Sbjct: 341 -EQIETDQLPEDCIKISVIKNQNIDVIEERINKLFFDNAAIVEKDATYLSNTRHISLIEK 399
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 400 ALKSLQAVNDGLEFGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 455
>gi|357637644|ref|ZP_09135519.1| tRNA modification GTPase TrmE [Streptococcus macacae NCTC 11558]
gi|357586098|gb|EHJ53301.1| tRNA modification GTPase TrmE [Streptococcus macacae NCTC 11558]
Length = 455
Score = 294 bits (753), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 177/476 (37%), Positives = 273/476 (57%), Gaps = 29/476 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVR+SG A+ I ++FK G SH +
Sbjct: 6 FDTITAIATPLG--EGAIGIVRISGSKALAITKKIFK----------GKNLDDLPSHTIN 53
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG ++++ G ++DEV+ M AP+++TREDV+E+ HG +L+ + +GA +A+P
Sbjct: 54 YGHIVEK-GEIIDEVMVSVMRAPKTFTREDVIEINTHGGVAVTNEILQLVIRSGARMAEP 112
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A+ + G S+L+ + R + + L
Sbjct: 113 GEFTKRAFLNGRVDLAQAEAVMDLIRAKTDKAMAVAVQQLDGSLSNLIHNTRQEILNTLA 172
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + L+ +K + + N L+TA K+L+ GL AI+GRPNV
Sbjct: 173 QVEVNIDYPEYDDVEEMTTALMREKTEQFERLLTNLLQTAKRGKILREGLSTAIIGRPNV 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGVE
Sbjct: 233 GKSSLLNNLLREEKAIVTNIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVE 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL + +++S +IL +NK D
Sbjct: 293 RSKKALEEADLVLLVLNSAEKLTEQDRMLL-------EISKNSNRLIL-LNKTDLPEQIE 344
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLMR 508
+E D + + Q I +E I I + I + N R + +
Sbjct: 345 SEQLP-----EDCLKISVLHNQNIDLIEERINGIFFDNTGIVEKDATYLSNARHISLIEK 399
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
E+L + +E +P+D +D+ A LG+I+GE +E+++ +F +FC+GK
Sbjct: 400 ALESLHAVTEGLELGMPVDLLQVDMTRAWEILGEITGEAAPDELITQLFSQFCLGK 455
>gi|294784390|ref|ZP_06749681.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_27]
gi|294487962|gb|EFG35317.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_27]
Length = 455
Score = 294 bits (753), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 172/486 (35%), Positives = 278/486 (57%), Gaps = 46/486 (9%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T G G + IVR+SG +++I+ ++F+P K KK S ++ +
Sbjct: 3 LDTIAAISTPRG--EGGISIVRMSGQDSLNILEKIFRP---KNKKVSELKNYS-----IN 52
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG ++D ++VDEVL M AP +YTRED++E+ CHG + +VL L+ GA +A+
Sbjct: 53 YGHIIDNE-HIVDEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVVLKNGARIAEI 111
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V +I K+ + +L ++G + +++ ++L
Sbjct: 112 GEFTKRAFLNGRIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAA 171
Query: 272 EIEARLDF-----DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
I LD+ DD +P NLV D + S ++++ + + + K+++ G++ AI+G+
Sbjct: 172 HINVVLDYPEEGIDDPVPE---NLV-DNLKKASAEIKDLVSSYDKGKIIKDGIKTAIIGK 227
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSS+LN+ + +RAIVT I GTTRD+IE + + G+P+ L+DTAGIR TDDIVE I
Sbjct: 228 PNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENI 287
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVE+S+ + AD+I+ + ED + + I ++K +I ++NKID
Sbjct: 288 GVEKSKELINSADLILYVIDTSREIDEEDYRIYDIINTDK--------VIGILNKIDIKK 339
Query: 447 SAS-------NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV- 498
+W + A++ GI +LE I K + + ++ +
Sbjct: 340 DIDLTKFPKIEKW----------IEISALSKLGIDNLENEIYKYIMNENVEDSSQKLVIT 389
Query: 499 NQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFG 558
N R L +T EAL+ + +I+ LP+D +D++DA +L +++GE SE++L +IF
Sbjct: 390 NVRHKSALEKTNEALLNIIETIDMGLPMDLMAVDIKDALDSLSEVTGEISSEDLLDHIFS 449
Query: 559 KFCIGK 564
FC+GK
Sbjct: 450 NFCVGK 455
>gi|390454467|ref|ZP_10239995.1| tRNA modification GTPase trmE [Paenibacillus peoriae KCTC 3763]
Length = 458
Score = 294 bits (753), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 187/481 (38%), Positives = 267/481 (55%), Gaps = 37/481 (7%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI TS+G G + ++R+SGP AV V +F+ S S PT H V YG
Sbjct: 5 TIAAIATSVG--EGGIAVIRVSGPEAVTEVEALFR--------SKTPLSKAPT-HTVHYG 53
Query: 154 VVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D H V+EVL M APRS+T EDVVE+ HG V ++RV+ L LA+PG
Sbjct: 54 HIIDPHNQEKVEEVLVTVMRAPRSFTTEDVVEISTHGGVVAVKRVMDLLLLQNIRLAEPG 113
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQAE V LI +KS A AL + G S + +R +E L
Sbjct: 114 EFTKRAFLNGRIDLSQAEGVIDLIRSKSDKAFSVALKQVDGQLSQNIRRLRNVLVETLAH 173
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IE +D+ + ++ L+ DK + +++ L TA K+L+ GL AIVGRPNVGK
Sbjct: 174 IEVNIDYPEHDVESFTSELIKDKSSQVMAEIDRLLHTAEQGKILREGLTTAIVGRPNVGK 233
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLN + ERAIVT+I GTTRDVIE VTV +P+ LLDTAGIRET D+VE+IGVERS
Sbjct: 234 SSLLNTLAHGERAIVTDIPGTTRDVIEEYVTVNNIPLKLLDTAGIRETMDVVERIGVERS 293
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN- 450
AD++++ ++A + ++ LL +I+ + I+++NK+D
Sbjct: 294 RTAVSEADLLLVVINANEPLHEDEMALLEQIRGRQA--------IVIMNKMDLPAQVDRD 345
Query: 451 -------EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQC 503
E V S +H +G LE AI + ++ + + N R
Sbjct: 346 LLLRYVPEELIVPMSVKEH--------EGADRLEQAISNLFFSGKLESADMTYVSNVRHI 397
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
L + +++LV + ++ +P+D ID+R A LG+I G+ + ++ IF +FC+G
Sbjct: 398 ALLKKARQSLVDAYEAADQFVPIDMIQIDVRLAWEHLGEIVGDTAHDALIDQIFSQFCLG 457
Query: 564 K 564
K
Sbjct: 458 K 458
>gi|450006790|ref|ZP_21827392.1| tRNA modification GTPase TrmE [Streptococcus mutans NMT4863]
gi|449187320|gb|EMB89113.1| tRNA modification GTPase TrmE [Streptococcus mutans NMT4863]
Length = 455
Score = 294 bits (753), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 173/476 (36%), Positives = 271/476 (56%), Gaps = 29/476 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVR+SG A+ I+ ++FK G SH +
Sbjct: 6 FDTITAIATPLG--EGAIGIVRISGSKALAIIKKIFK----------GKNLDDVPSHTIN 53
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ +G ++DEV+ M AP+++TREDV+E+ HG +L L +GA +A P
Sbjct: 54 YGHIVE-NGAIIDEVMVSVMRAPKTFTREDVIEINTHGGVAVTNEILHLVLRSGARMADP 112
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A+ + G S+L+ + R + + L
Sbjct: 113 GEFTKRAFLNGRVDLAQAEAVMDLIRAKTDKAMAVAVQQLDGSLSNLINNTRQEILNTLA 172
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + L+ +K + N L+TA K+L+ GL AI+GRPNV
Sbjct: 173 QVEVNIDYPEYDDVEEMTTALMREKTQEFENLLTNLLKTARRGKILREGLSTAIIGRPNV 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGVE
Sbjct: 233 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVE 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL Q++ + ++++NK D
Sbjct: 293 RSKKALEEADLVLLVLNSAEKLTDQDRTLLEISQNSNR--------LILLNKTDLP---- 340
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLH-QIPAGGRRWAVNQRQCEQLMR 508
E + D + + Q I +E I K+ + I + N R + +
Sbjct: 341 -EQIETDQLPEDCIKISVIKNQNIDVIEERINKLFFDNAAIVEKDATYLSNARHISLIEK 399
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 400 ALKSLQAVNDGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 455
>gi|456371113|gb|EMF50009.1| GTPase and tRNA-U34 5-formylation enzyme [Streptococcus parauberis
KRS-02109]
Length = 488
Score = 294 bits (752), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 175/480 (36%), Positives = 271/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+DI VFK G SH +
Sbjct: 37 FDTITAISTPLG--EGAIGIVRLSGSQALDIAKSVFK----------GKDLASVASHTIN 84
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG +LD ++DEV+ M P+++TREDVVE+ HG +L+ ++ GA +A+
Sbjct: 85 YGHILDPDKDEILDEVMVSVMREPKTFTREDVVEINTHGGIAVTNEILQLLIKHGARMAE 144
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G L+ + R + + L
Sbjct: 145 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLKQLIDATRQEILNTL 204
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +EN L TA K+L+ GL AI+GRPN
Sbjct: 205 AQVEVNIDYPEYDDVEEMTTALMREKTQEFQTLLENLLRTARRGKILREGLSTAIIGRPN 264
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+IAGTTRDVIE V + GVP+ L+DTAGIR+T+D+VEKIGV
Sbjct: 265 VGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRDTEDVVEKIGV 324
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D LL+ Q + + I+++NK D
Sbjct: 325 ERSKKALNEADLVLLVLNASEKLTEQDHILLDLSQDSNR--------IILLNKTDLEVQI 376
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
+ +D++ + + I +E I ++ GL + A + N R
Sbjct: 377 EKDQLP-----SDYIEISVLNNENIDQIEDRINQLFFDNAGLVEHDA---TYLSNARHIS 428
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + + +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 429 LIEKAVQSLQAVNDGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 488
>gi|227508120|ref|ZP_03938169.1| tRNA modification GTPase TrmE [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227511145|ref|ZP_03941194.1| tRNA modification GTPase TrmE [Lactobacillus buchneri ATCC 11577]
gi|227085627|gb|EEI20939.1| tRNA modification GTPase TrmE [Lactobacillus buchneri ATCC 11577]
gi|227192349|gb|EEI72416.1| tRNA modification GTPase TrmE [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 464
Score = 294 bits (752), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 177/479 (36%), Positives = 273/479 (56%), Gaps = 28/479 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG + IVR+SG A+D+ V++ G + S+
Sbjct: 8 FDTIAAIST----PPGEGGISIVRISGEEALDVAKNVYR----------GKNLDKVASNT 53
Query: 150 VEYGVVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D N VDEV+ M AP +YT+ED++E+ CHG V R+L+ L GA +
Sbjct: 54 INYGHIVDPSTNQEVDEVMLSIMRAPHTYTKEDIIEINCHGGIVATNRILQLVLSNGARM 113
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQ+E V LI AK+ + AA++ + G S L+ +R ++
Sbjct: 114 AEPGEFTKRAFLNGRIDLSQSEAVMDLIEAKTDRSMKAAISQLDGNLSHLIKHLRKDILD 173
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L ++E +D+ D++ + L+ +K + + + L+TA K+L+ GL +I+GR
Sbjct: 174 VLAQVEVNIDYPEYDDVETMTSKLLREKATDVHKRIVQLLQTAKQGKILRDGLATSIIGR 233
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN ++AIVT++ GTTRDV+E V GVP+ L+DTAGIR+T+D VEKI
Sbjct: 234 PNVGKSSLLNHLLHEDKAIVTDVPGTTRDVLEEYANVSGVPLKLIDTAGIRDTNDKVEKI 293
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GV+RS AD++++ ++A + T ED +L+ +NKK I+V+NK D
Sbjct: 294 GVDRSRKAINSADLVLLVLNASEPLTEEDRQLIE--ATNKKKR------IVVLNKTDLPI 345
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCEQ 505
+ K + + T A+ G++ LE I + I + V N R
Sbjct: 346 KLNLSEIKRLTKAQNIISTSAIKADGLKGLEELISTMFFNEGIASSQNDVVVTNARHIGL 405
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + K AL + ++E +P+D ID+ LG+I+G+ +E++ +F +FC+GK
Sbjct: 406 LNQAKSALEDVLKGLDEGMPVDLVQIDMTRCWDFLGEITGDSYQDELIDQLFSQFCLGK 464
>gi|225858807|ref|YP_002740317.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 70585]
gi|225720545|gb|ACO16399.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 70585]
Length = 457
Score = 294 bits (752), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 274/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDD VE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDTVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 346 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|401683482|ref|ZP_10815368.1| tRNA modification GTPase TrmE [Streptococcus sp. BS35b]
gi|418975259|ref|ZP_13523168.1| tRNA modification GTPase TrmE [Streptococcus oralis SK1074]
gi|383348630|gb|EID26589.1| tRNA modification GTPase TrmE [Streptococcus oralis SK1074]
gi|400187560|gb|EJO21754.1| tRNA modification GTPase TrmE [Streptococcus sp. BS35b]
Length = 457
Score = 294 bits (752), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 272/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLP--- 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E + D + + Q I +E I + GL + A + N R
Sbjct: 343 --EVIETSELPEDIIRISVLKNQNIDKIEDRINDLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|450088095|ref|ZP_21854633.1| tRNA modification GTPase TrmE [Streptococcus mutans NV1996]
gi|449216904|gb|EMC16986.1| tRNA modification GTPase TrmE [Streptococcus mutans NV1996]
Length = 455
Score = 294 bits (752), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 173/476 (36%), Positives = 272/476 (57%), Gaps = 29/476 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVR+SG A+ I+ ++FK G SH +
Sbjct: 6 FDTITAIATPLG--EGAIGIVRISGSKALAIIKKIFK----------GKNLDDVPSHTIN 53
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ +G ++DEV+ M AP+++TREDV+E+ HG +L+ L +GA +A P
Sbjct: 54 YGHIVE-NGAIIDEVMVSVMRAPKTFTREDVIEINTHGGVAVTNEILQLVLRSGARMADP 112
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A+ + G S+L+ + R + + L
Sbjct: 113 GEFTKRAFLNGRVDLAQAEAVMDLIRAKTDKAMAVAVQQLDGSLSNLINNTRQEILNTLA 172
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + L+ +K + N L+TA K+L+ GL AI+GRPNV
Sbjct: 173 QVEVNIDYPEYDDVEEMTTALMREKTQEFETLLTNLLKTARRGKILREGLSTAIIGRPNV 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGVE
Sbjct: 233 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVE 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL Q++ + ++++NK D
Sbjct: 293 RSKKALEEADLVLLVLNSAEKLTDQDRTLLEISQNSNR--------LILLNKTDLP---- 340
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLH-QIPAGGRRWAVNQRQCEQLMR 508
E + D + + Q I +E I K+ + I + N R + +
Sbjct: 341 -EQIETDQLPEDCIKISVIKNQNIDVIEELINKLFFDNAAIVEKDATYLSNARHISLIEK 399
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 400 ALKSLQAVNDGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 455
>gi|306831214|ref|ZP_07464375.1| tRNA modification GTPase TrmE [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|304426780|gb|EFM29891.1| tRNA modification GTPase TrmE [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
Length = 457
Score = 294 bits (752), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 178/478 (37%), Positives = 273/478 (57%), Gaps = 31/478 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG A+ I +V++ G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTEALAIAQKVYR----------GKDLNKVASHTIN 53
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + + V+DEV+ MLAP+++T E+VVE+ HG +LR L GA LA+
Sbjct: 54 YGHIVDPNTDEVLDEVMVSVMLAPKTFTCENVVEINTHGGVAVTNEILRLVLRQGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSQLINDTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + +EN L TA K+L+ GL AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTALIREKTQEFQELLENLLRTAKRGKILREGLSTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDVVEKIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ +++ + T++D LL + + + I+++NK D
Sbjct: 294 ERSKKALEEADLVLLVLNSSEPLTNQDRALLELSKDSNR--------IILLNKTDLPEKI 345
Query: 449 SNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQL 506
+ D V +V Q I +E I ++ + I + N R +
Sbjct: 346 E------ADQLPDDVIRISVLKNQNIDVIEERINQLFFDNAGIVEKDATYLSNARHISLI 399
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++L + +E +P+D IDL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 400 EKAVQSLQAVNEGLELGMPVDLLQIDLTRCWEILGEITGDAAPDELITKLFSQFCLGK 457
>gi|194467398|ref|ZP_03073385.1| tRNA modification GTPase TrmE [Lactobacillus reuteri 100-23]
gi|194454434|gb|EDX43331.1| tRNA modification GTPase TrmE [Lactobacillus reuteri 100-23]
Length = 462
Score = 294 bits (752), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 176/475 (37%), Positives = 267/475 (56%), Gaps = 24/475 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T +G G + I+R+SG AV + R++K G + +H + YG
Sbjct: 8 TIAAISTPVG--EGGISIIRISGDDAVKVAQRIYK----------GKNLAKVATHTINYG 55
Query: 154 VVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D + VDEV+ M AP +YTREDV+E+ CHG + R+L+ L GA +A+PG
Sbjct: 56 HIVDPDTDQEVDEVMVSVMRAPHTYTREDVIEINCHGGLLATNRILQLVLSFGARMAEPG 115
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGRLDLSQ+E V LI AK+ + AL + G S L+ ++R +++L +
Sbjct: 116 EFTKRAFLNGRLDLSQSEAVMDLIRAKTDKSMKVALNQLDGDLSRLIRNLRQDILDVLAQ 175
Query: 273 IEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+E +D+ D + + L+ +K + Q ++ L+TA K+L+ GL AI+G+PNVG
Sbjct: 176 VEVNIDYPEYDAVEEMTTKLLKEKAEDIQQRIQGLLKTAKQGKVLRDGLATAIIGQPNVG 235
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLN+ ++AIVT +AGTTRDVIE V V GVP+ L+DTAGIR+T+D VEKIGVER
Sbjct: 236 KSSLLNSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAGIRDTNDQVEKIGVER 295
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S AD++++ + + + T ED +LL + ++ I+++NK D
Sbjct: 296 SRKALGAADLVLLLIDSSNELTEEDYQLLEATKDKQR--------IIILNKTDLPRKVDL 347
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCEQLMRT 509
K + + T V +G+ L I + I + V N R L +
Sbjct: 348 AELKSLAGKSAVIETSIVNHEGMDQLGEQIGYMFFNEGIESNQNNVMVTNARHIGLLHQA 407
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+AL + I + +P+D ID+ LG+I+G+ +E+L +F +FC+GK
Sbjct: 408 NDALSDVLKGINDGMPVDLVQIDMTRCWELLGEITGDSYQDELLDQLFSQFCLGK 462
>gi|449931911|ref|ZP_21802537.1| tRNA modification GTPase TrmE [Streptococcus mutans 3SN1]
gi|449940935|ref|ZP_21805284.1| tRNA modification GTPase TrmE [Streptococcus mutans 11A1]
gi|449980131|ref|ZP_21817020.1| tRNA modification GTPase TrmE [Streptococcus mutans 5SM3]
gi|450122796|ref|ZP_21866936.1| tRNA modification GTPase TrmE [Streptococcus mutans ST6]
gi|449152631|gb|EMB56333.1| tRNA modification GTPase TrmE [Streptococcus mutans 11A1]
gi|449161970|gb|EMB65135.1| tRNA modification GTPase TrmE [Streptococcus mutans 3SN1]
gi|449177306|gb|EMB79611.1| tRNA modification GTPase TrmE [Streptococcus mutans 5SM3]
gi|449227543|gb|EMC26960.1| tRNA modification GTPase TrmE [Streptococcus mutans ST6]
Length = 455
Score = 294 bits (752), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 173/476 (36%), Positives = 272/476 (57%), Gaps = 29/476 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVR+SG A+ I+ ++FK G SH +
Sbjct: 6 FDTITAIATPLG--EGAIGIVRISGSKALAIIKKIFK----------GKNLDDVPSHTIN 53
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ +G ++DEV+ M AP+++TREDV+E+ HG +L+ L +GA +A P
Sbjct: 54 YGHIVE-NGAIIDEVMVSVMRAPKTFTREDVIEINTHGGVAVTNEILQLVLRSGARMADP 112
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A+ + G S+L+ + R + + L
Sbjct: 113 GEFTKRAFLNGRVDLAQAEAVMDLIRAKTDKAMAVAVQQLDGSLSNLINNTRQEILNTLA 172
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + L+ +K + N L+TA K+L+ GL AI+GRPNV
Sbjct: 173 QVEVNIDYPEYDDVEEMTTALMREKTQEFETLLTNLLKTARRGKILREGLSTAIIGRPNV 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGVE
Sbjct: 233 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVE 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL Q++ + ++++NK D
Sbjct: 293 RSKKALEEADLVLLVLNSAEKLTDQDRTLLEISQNSNR--------LILLNKTDLP---- 340
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLH-QIPAGGRRWAVNQRQCEQLMR 508
E + D + + Q I +E I K+ + I + N R + +
Sbjct: 341 -EQIETDQLPEDCIKISVIKNQNIDVIEERINKLFFDNAAIVEKDATYLSNTRHISLIEK 399
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 400 ALKSLQAVNDGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 455
>gi|423335786|ref|ZP_17313558.1| thiophene and furan oxidation protein ThdF [Lactobacillus reuteri
ATCC 53608]
gi|337729010|emb|CCC04130.1| thiophene and furan oxidation protein ThdF [Lactobacillus reuteri
ATCC 53608]
Length = 462
Score = 294 bits (752), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 176/476 (36%), Positives = 267/476 (56%), Gaps = 24/476 (5%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
TIAAI T +G G + I+R+SG AV + R++K G + +H + Y
Sbjct: 7 DTIAAISTPVG--EGGISIIRISGDDAVKVAQRIYK----------GKDLAKVATHTINY 54
Query: 153 GVVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
G ++D + VDEV+ M AP +YTREDV+E+ CHG + R+L+ L GA +A+P
Sbjct: 55 GHIVDPDTDQEVDEVMVSVMRAPHTYTREDVIEINCHGGLLATNRILQLVLSFGARIAEP 114
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGRLDLSQ+E V LI AK+ + AL + G S L+ ++R +++L
Sbjct: 115 GEFTKRAFLNGRLDLSQSEAVMDLIRAKTDKSMKVALNQLDGDLSRLIRNLRQDILDVLA 174
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D + + L+ +K + Q ++ L+TA K+L+ GL AI+G+PNV
Sbjct: 175 QVEVNIDYPEYDAVEEMTTKLLKEKAEDIQQRIQGLLKTAKQGKVLRDGLATAIIGQPNV 234
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN+ ++AIVT +AGTTRDVIE V V GVP+ L+DTAGIR+T+D VEKIGVE
Sbjct: 235 GKSSLLNSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAGIRDTNDQVEKIGVE 294
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS AD++++ + + + T ED +LL + ++ I+++NK D
Sbjct: 295 RSRKALGAADLVLLLIDSSNELTEEDHQLLEATKDKQR--------IIILNKTDLPRKVD 346
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCEQLMR 508
K + + T V +G+ L I + I + V N R L +
Sbjct: 347 LAELKSLAGKSAVIETSIVNHEGMDQLGEQIGHMFFNEGIESNQNNVMVTNARHIGLLHQ 406
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+AL + I + +P+D ID+ LG+I+G+ +E+L +F +FC+GK
Sbjct: 407 ANDALSDVLKGINDGMPVDLVQIDMTRCWELLGEITGDSYQDELLDQLFSQFCLGK 462
>gi|148984971|ref|ZP_01818214.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP3-BS71]
gi|182683965|ref|YP_001835712.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CGSP14]
gi|147922669|gb|EDK73786.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP3-BS71]
gi|182629299|gb|ACB90247.1| tRNA modification GTPase [Streptococcus pneumoniae CGSP14]
gi|429316019|emb|CCP35672.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SPN034156]
Length = 479
Score = 294 bits (752), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 274/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 28 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLNKVASHTLN 75
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 76 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 135
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 136 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 195
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + L TA K+L+ G+ AI+GRPN
Sbjct: 196 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPN 255
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 256 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 315
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 316 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 367
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 368 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 419
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 420 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 479
>gi|322374354|ref|ZP_08048868.1| tRNA modification GTPase TrmE [Streptococcus sp. C300]
gi|321279854|gb|EFX56893.1| tRNA modification GTPase TrmE [Streptococcus sp. C300]
Length = 457
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 273/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPQTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIR+TDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD++++ ++A + T++D +LL Q T I+++NK D P A
Sbjct: 294 ERSRKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------VTNRIILLNKTDL-PEA 344
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
+ D + + Q I +E I + GL + A + N R
Sbjct: 345 I----ETSELPEDIIRISVLKNQNIDKIEERINDLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|148994246|ref|ZP_01823539.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP9-BS68]
gi|168488838|ref|ZP_02713037.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP195]
gi|417678970|ref|ZP_12328367.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17570]
gi|418234211|ref|ZP_12860790.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA08780]
gi|419508084|ref|ZP_14047737.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA49542]
gi|421220163|ref|ZP_15677012.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070425]
gi|421223493|ref|ZP_15680270.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070531]
gi|421278789|ref|ZP_15729597.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17301]
gi|421294119|ref|ZP_15744842.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA56113]
gi|147927387|gb|EDK78418.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP9-BS68]
gi|183572349|gb|EDT92877.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP195]
gi|332073349|gb|EGI83828.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17570]
gi|353888456|gb|EHE68230.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA08780]
gi|379611802|gb|EHZ76524.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA49542]
gi|395585952|gb|EJG46330.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070531]
gi|395588167|gb|EJG48500.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070425]
gi|395880222|gb|EJG91275.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17301]
gi|395894409|gb|EJH05389.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA56113]
Length = 457
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 275/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ ++R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+IE +D+ D++ +V +K Q + L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQIEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ A+++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEANLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 346 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLIEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|418125641|ref|ZP_12762551.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44511]
gi|418191561|ref|ZP_12828065.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47388]
gi|418214190|ref|ZP_12840925.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA54644]
gi|419484120|ref|ZP_14023896.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA43257]
gi|421300880|ref|ZP_15751550.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA19998]
gi|353797607|gb|EHD77940.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44511]
gi|353857462|gb|EHE37425.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47388]
gi|353871473|gb|EHE51344.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA54644]
gi|379583631|gb|EHZ48508.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA43257]
gi|395898440|gb|EJH09384.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA19998]
Length = 457
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 275/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ ++R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+IE +D+ D++ +V +K Q + L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQIEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ A+++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEANLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 346 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|418307305|ref|ZP_12919030.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21194]
gi|365245874|gb|EHM86478.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21194]
Length = 459
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 176/479 (36%), Positives = 273/479 (56%), Gaps = 28/479 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT-SHVV 150
TI +I T +G GA+GIVRLSGP AV+IV +++K G SH +
Sbjct: 3 LDTITSISTPMG--EGAIGIVRLSGPQAVEIVDKLYK----------GKHLLNDVPSHTI 50
Query: 151 EYGVVLDRHGNVVDEVLAVPML-APRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG ++D V E + V +L AP+++TRED++E+ CHG + + RVL + GA +A
Sbjct: 51 NYGHIIDPESKEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTYGARMA 110
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+
Sbjct: 111 EPGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEI 170
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ ++++ + Q++ L+T K+++ GL IVG+P
Sbjct: 171 LAQVEVNIDYPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKP 230
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 231 NVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIG 290
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD+I+ ++ + T ED L +++ +I+++NK+D +
Sbjct: 291 VERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKNE--------DVIVIVNKMDLEQN 342
Query: 448 ASNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+ N+V + D + T + +GI +LE I + ++ + N R
Sbjct: 343 I--DINEVKDMIGDTPLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISL 400
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + ++ + + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 401 LKQARQTIQDAIDAAESGVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459
>gi|24379659|ref|NP_721614.1| tRNA modification GTPase TrmE [Streptococcus mutans UA159]
gi|290580346|ref|YP_003484738.1| thiophene and furan degradation protein [Streptococcus mutans
NN2025]
gi|397649873|ref|YP_006490400.1| tRNA modification GTPase TrmE [Streptococcus mutans GS-5]
gi|449875107|ref|ZP_21782037.1| tRNA modification GTPase TrmE [Streptococcus mutans S1B]
gi|449880808|ref|ZP_21784086.1| tRNA modification GTPase TrmE [Streptococcus mutans SA38]
gi|449894389|ref|ZP_21789236.1| tRNA modification GTPase TrmE [Streptococcus mutans SF12]
gi|449900183|ref|ZP_21791387.1| tRNA modification GTPase TrmE [Streptococcus mutans R221]
gi|449903169|ref|ZP_21791990.1| tRNA modification GTPase TrmE [Streptococcus mutans M230]
gi|449947293|ref|ZP_21807304.1| tRNA modification GTPase TrmE [Streptococcus mutans 11SSST2]
gi|449985325|ref|ZP_21819593.1| tRNA modification GTPase TrmE [Streptococcus mutans NFSM2]
gi|449989036|ref|ZP_21820879.1| tRNA modification GTPase TrmE [Streptococcus mutans NVAB]
gi|449997929|ref|ZP_21824157.1| tRNA modification GTPase TrmE [Streptococcus mutans A9]
gi|450029127|ref|ZP_21832576.1| tRNA modification GTPase TrmE [Streptococcus mutans G123]
gi|450035357|ref|ZP_21834972.1| tRNA modification GTPase TrmE [Streptococcus mutans M21]
gi|450062991|ref|ZP_21844687.1| tRNA modification GTPase TrmE [Streptococcus mutans NLML5]
gi|450068881|ref|ZP_21847378.1| tRNA modification GTPase TrmE [Streptococcus mutans NLML9]
gi|450070536|ref|ZP_21847624.1| tRNA modification GTPase TrmE [Streptococcus mutans M2A]
gi|450082498|ref|ZP_21852397.1| tRNA modification GTPase TrmE [Streptococcus mutans N66]
gi|450101499|ref|ZP_21859090.1| tRNA modification GTPase TrmE [Streptococcus mutans SF1]
gi|450112314|ref|ZP_21863170.1| tRNA modification GTPase TrmE [Streptococcus mutans SM6]
gi|450146024|ref|ZP_21874814.1| tRNA modification GTPase TrmE [Streptococcus mutans 1ID3]
gi|450170308|ref|ZP_21883443.1| tRNA modification GTPase TrmE [Streptococcus mutans SM4]
gi|450176602|ref|ZP_21885898.1| tRNA modification GTPase TrmE [Streptococcus mutans SM1]
gi|32171828|sp|Q8DTT8.1|MNME_STRMU RecName: Full=tRNA modification GTPase MnmE
gi|24377614|gb|AAN58920.1|AE014960_1 putative thiophene and furan degradation protein [Streptococcus
mutans UA159]
gi|254997245|dbj|BAH87846.1| putative thiophene and furan degradation protein [Streptococcus
mutans NN2025]
gi|392603442|gb|AFM81606.1| tRNA modification GTPase TrmE [Streptococcus mutans GS-5]
gi|449148702|gb|EMB52549.1| tRNA modification GTPase TrmE [Streptococcus mutans 1ID3]
gi|449168827|gb|EMB71628.1| tRNA modification GTPase TrmE [Streptococcus mutans 11SSST2]
gi|449179255|gb|EMB81476.1| tRNA modification GTPase TrmE [Streptococcus mutans NFSM2]
gi|449181343|gb|EMB83448.1| tRNA modification GTPase TrmE [Streptococcus mutans A9]
gi|449183079|gb|EMB85076.1| tRNA modification GTPase TrmE [Streptococcus mutans NVAB]
gi|449194783|gb|EMB96128.1| tRNA modification GTPase TrmE [Streptococcus mutans G123]
gi|449195472|gb|EMB96788.1| tRNA modification GTPase TrmE [Streptococcus mutans M21]
gi|449205139|gb|EMC05899.1| tRNA modification GTPase TrmE [Streptococcus mutans NLML5]
gi|449206101|gb|EMC06817.1| tRNA modification GTPase TrmE [Streptococcus mutans NLML9]
gi|449213762|gb|EMC14089.1| tRNA modification GTPase TrmE [Streptococcus mutans M2A]
gi|449214373|gb|EMC14650.1| tRNA modification GTPase TrmE [Streptococcus mutans N66]
gi|449220028|gb|EMC19958.1| tRNA modification GTPase TrmE [Streptococcus mutans SF1]
gi|449222251|gb|EMC21981.1| tRNA modification GTPase TrmE [Streptococcus mutans SM6]
gi|449245004|gb|EMC43357.1| tRNA modification GTPase TrmE [Streptococcus mutans SM1]
gi|449245972|gb|EMC44291.1| tRNA modification GTPase TrmE [Streptococcus mutans SM4]
gi|449252376|gb|EMC50357.1| tRNA modification GTPase TrmE [Streptococcus mutans SA38]
gi|449254304|gb|EMC52219.1| tRNA modification GTPase TrmE [Streptococcus mutans S1B]
gi|449255379|gb|EMC53235.1| tRNA modification GTPase TrmE [Streptococcus mutans SF12]
gi|449257512|gb|EMC55163.1| tRNA modification GTPase TrmE [Streptococcus mutans R221]
gi|449261496|gb|EMC58969.1| tRNA modification GTPase TrmE [Streptococcus mutans M230]
Length = 455
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 173/476 (36%), Positives = 272/476 (57%), Gaps = 29/476 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVR+SG A+ I+ ++FK G SH +
Sbjct: 6 FDTITAIATPLG--EGAIGIVRISGSKALAIIKKIFK----------GKNLDDVPSHTIN 53
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ +G ++DEV+ M AP+++TREDV+E+ HG +L+ L +GA +A P
Sbjct: 54 YGHIVE-NGAIIDEVMVSVMRAPKTFTREDVIEINTHGGVAVTNEILQLVLRSGARMADP 112
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A+ + G S+L+ + R + + L
Sbjct: 113 GEFTKRAFLNGRVDLAQAEAVMDLIRAKTDKAMAVAVQQLDGSLSNLINNTRQEILNTLA 172
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + L+ +K + N L+TA K+L+ GL AI+GRPNV
Sbjct: 173 QVEVNIDYPEYDDVEEMTTALMREKTQEFETLLTNLLKTARRGKILREGLSTAIIGRPNV 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGVE
Sbjct: 233 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVE 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL Q++ + ++++NK D
Sbjct: 293 RSKKALEEADLVLLVLNSAEKLTDQDRTLLEISQNSNR--------LILLNKTDLP---- 340
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLH-QIPAGGRRWAVNQRQCEQLMR 508
E + D + + Q I +E I K+ + I + N R + +
Sbjct: 341 -EQIETDQLPEDCIKISVIKNQNIDVIEERINKLFFDNAAIVEKDATYLSNARHISLIEK 399
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 400 ALKSLQAVNDGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 455
>gi|322387781|ref|ZP_08061390.1| thiophene and furan oxidation protein ThdF [Streptococcus infantis
ATCC 700779]
gi|419843863|ref|ZP_14367168.1| tRNA modification GTPase TrmE [Streptococcus infantis ATCC 700779]
gi|321141648|gb|EFX37144.1| thiophene and furan oxidation protein ThdF [Streptococcus infantis
ATCC 700779]
gi|385702287|gb|EIG39432.1| tRNA modification GTPase TrmE [Streptococcus infantis ATCC 700779]
Length = 457
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 178/480 (37%), Positives = 275/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSQVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA +A+
Sbjct: 54 YGHIVDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSELINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLKTARRGKILREGIATAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDVVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D P A
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDL-PEA 344
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
+ +D + + Q I +E I + GL + A + N R
Sbjct: 345 I----ETSELPDDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|149003876|ref|ZP_01828699.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP14-BS69]
gi|237650073|ref|ZP_04524325.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CCRI 1974]
gi|237822158|ref|ZP_04598003.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CCRI
1974M2]
gi|387757394|ref|YP_006064373.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae OXC141]
gi|418076122|ref|ZP_12713361.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47502]
gi|418143834|ref|ZP_12780634.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13494]
gi|418232084|ref|ZP_12858671.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA07228]
gi|418236524|ref|ZP_12863092.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA19690]
gi|419457398|ref|ZP_13997343.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA02254]
gi|419479843|ref|ZP_14019650.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA19101]
gi|419499535|ref|ZP_14039233.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47597]
gi|421206472|ref|ZP_15663532.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2090008]
gi|421229664|ref|ZP_15686335.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2061376]
gi|421291890|ref|ZP_15742628.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA56348]
gi|421311825|ref|ZP_15762430.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA58981]
gi|147758106|gb|EDK65110.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP14-BS69]
gi|301799983|emb|CBW32573.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae OXC141]
gi|353749911|gb|EHD30554.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47502]
gi|353809575|gb|EHD89835.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13494]
gi|353886811|gb|EHE66591.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA07228]
gi|353892756|gb|EHE72504.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA19690]
gi|379532396|gb|EHY97625.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA02254]
gi|379571009|gb|EHZ35968.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA19101]
gi|379601423|gb|EHZ66197.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47597]
gi|395576111|gb|EJG36669.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2090008]
gi|395596072|gb|EJG56295.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2061376]
gi|395894107|gb|EJH05088.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA56348]
gi|395911214|gb|EJH22082.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA58981]
gi|429319363|emb|CCP32625.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SPN034183]
gi|429321179|emb|CCP34599.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SPN994039]
gi|429322999|emb|CCP30640.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SPN994038]
Length = 457
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 274/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 346 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|418193650|ref|ZP_12830142.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47439]
gi|353859630|gb|EHE39580.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47439]
Length = 457
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 275/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGIDSFAIAQKIFK----------GKDLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ ++R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 346 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|326793316|ref|YP_004311137.1| tRNA modification GTPase mnmE [Clostridium lentocellum DSM 5427]
gi|326544080|gb|ADZ85939.1| tRNA modification GTPase mnmE [Clostridium lentocellum DSM 5427]
Length = 460
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 171/455 (37%), Positives = 264/455 (58%), Gaps = 20/455 (4%)
Query: 113 RLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAVPML 172
R+SG ++IV +VF+ KK K + SH + YG ++ G V+DEVL + M
Sbjct: 23 RVSGKETIEIVDKVFRAANKKSLK-------KVDSHTITYGHIVSDSGKVLDEVLIMLMK 75
Query: 173 APRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENV 232
PR++TRED++E+ CHG V L VL ++AGA +A GEFT RAFLNGR+DL+Q E +
Sbjct: 76 GPRTFTREDIIEINCHGGPVPLNAVLMEVIKAGARMADNGEFTKRAFLNGRIDLAQVEAI 135
Query: 233 EKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDF---DDEMPPLNLN 289
+I +K+ + A+ ++G S + + I+++ IE +D+ DD+ P N
Sbjct: 136 MDIIESKTELSLSQAVGQLEGNLSKKIKEYQDTLIQVIARIEVSIDYPEYDDDEPITND- 194
Query: 290 LVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEI 349
++ + +++ L TA+ K+++ G++ AIVGRPNVGKSSLLNA + +AIVT+I
Sbjct: 195 -FEAELKDLLEELRELLRTADTGKMIREGVKTAIVGRPNVGKSSLLNALLEENKAIVTDI 253
Query: 350 AGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVD 409
GTTRDV+EA + + G+P LLDTAGIRET+DIVEKIGVERS++ AD+++M V +
Sbjct: 254 PGTTRDVVEAYLNIDGIPFQLLDTAGIRETEDIVEKIGVERSKSSIEEADLVLMLVDSHV 313
Query: 410 GWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVT 469
G +D E+L ++++ +I + NK D + + E + S + + A
Sbjct: 314 GLLDKDQEILEQVKNKH--------VIYIFNKTDLENNITQEMLETHFSNGEVIKVSAKE 365
Query: 470 GQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFW 529
G+ +L A+ V NQRQ + L+ ++L ++ +IE LP D
Sbjct: 366 QSGLNELRQAMKHFVIKGSAAVHNEATISNQRQKQSLINAIKSLEKVIDAIELGLPEDCL 425
Query: 530 TIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
IDL DA LG I GE + EE+++ +F +FC+GK
Sbjct: 426 AIDLHDAFGHLGMIVGESLKEEIINQLFSRFCLGK 460
>gi|449936614|ref|ZP_21804073.1| tRNA modification GTPase TrmE [Streptococcus mutans 2ST1]
gi|450154736|ref|ZP_21877906.1| tRNA modification GTPase TrmE [Streptococcus mutans 21]
gi|449165462|gb|EMB68469.1| tRNA modification GTPase TrmE [Streptococcus mutans 2ST1]
gi|449237591|gb|EMC36415.1| tRNA modification GTPase TrmE [Streptococcus mutans 21]
Length = 455
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 173/476 (36%), Positives = 272/476 (57%), Gaps = 29/476 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVR+SG A+ I+ ++FK G SH +
Sbjct: 6 FDTITAIATPLG--EGAIGIVRISGSKALAIIKKIFK----------GKNLDDVPSHTIN 53
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ +G ++DEV+ M AP+++TREDV+E+ HG +L+ L +GA +A P
Sbjct: 54 YGHIVE-NGAIIDEVMVSVMRAPKTFTREDVIEINTHGGVAVTNEILQLVLRSGARMADP 112
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A+ + G S+L+ + R + + L
Sbjct: 113 GEFTKRAFLNGRVDLAQAEAVMDLIRAKTDKAMAVAVQQLDGSLSNLINNTRQEILNTLA 172
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + L+ +K + N L+TA K+L+ GL AI+GRPNV
Sbjct: 173 QVEVNIDYPEYDDVEEMTTALMREKTQEFETLLTNLLKTARRGKILREGLSTAIIGRPNV 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGVE
Sbjct: 233 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVE 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL Q++ + ++++NK D
Sbjct: 293 RSKKALEEADLVLLVLNSAEKLTDQDRTLLEISQNSNR--------LILLNKTDLP---- 340
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLH-QIPAGGRRWAVNQRQCEQLMR 508
E + D + + Q I +E I K+ + I + N R + +
Sbjct: 341 -EQIETDQLPEDCIKISVIKNQNIDIIEERINKLFFDNAAIVEKDATYLSNARHISLIEK 399
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 400 ALKSLQAVNDGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 455
>gi|329115888|ref|ZP_08244605.1| tRNA modification GTPase TrmE [Streptococcus parauberis NCFD 2020]
gi|326906293|gb|EGE53207.1| tRNA modification GTPase TrmE [Streptococcus parauberis NCFD 2020]
Length = 458
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 176/480 (36%), Positives = 270/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+DI VFK G SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGSQALDIAKSVFK----------GKDLASVASHTIN 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG +LD ++DEV+ M P+++TREDVVE+ HG +L+ ++ GA +A+
Sbjct: 55 YGHILDPDKDEILDEVMVSVMREPKTFTREDVVEINTHGGIAVTNEILQLLIKHGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G L+ R + + L
Sbjct: 115 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLKQLIDDTRQEILNTL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +EN L TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTTALMREKTQEFQTLLENLLRTARRGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+IAGTTRDVIE V + GVP+ L+DTAGIR+T+DIVEKIGV
Sbjct: 235 VGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRDTEDIVEKIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D LL+ Q + + I+++NK D
Sbjct: 295 ERSKKALNEADLVLLVLNASEKLTEQDHILLDLSQDSNR--------IILLNKTDLEVQI 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
+ +D++ + + I +E I ++ GL + A + N R
Sbjct: 347 EKDQLP-----SDYIEISVLNNENIDQIEDRINQLFFDNAGLVEHDA---TYLSNARHIS 398
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + + +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 399 LIEKAVQSLQAVNDGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458
>gi|312862786|ref|ZP_07723026.1| tRNA modification GTPase TrmE [Streptococcus vestibularis F0396]
gi|311101646|gb|EFQ59849.1| tRNA modification GTPase TrmE [Streptococcus vestibularis F0396]
Length = 456
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 177/479 (36%), Positives = 272/479 (56%), Gaps = 35/479 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG AV I +VFK G TSH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTDAVAIANKVFK----------GKNLESVTSHTIN 54
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ + +DEV+ M +P+++TREDVVE+ HG +L+ + +GA +A+P
Sbjct: 55 YGHIVE-NDETIDEVMVSVMRSPKTFTREDVVEINTHGGVAVTNEILQLLIRSGARMAEP 113
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A++ + G L+ + R + + L
Sbjct: 114 GEFTKRAFLNGRVDLTQAEAVMDLIRAKTDKAMAVAVSQLDGSLKDLINNTRQEILNTLA 173
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + LV +K +EN L TA K+L+ GL AI+GRPNV
Sbjct: 174 QVEVNIDYPEYDDVEEVTTALVREKTQDFQALLENLLATAKRGKILREGLSTAIIGRPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIR+TDD+VEKIGVE
Sbjct: 234 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVE 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL +++ + I+++NK D +
Sbjct: 294 RSKKALEEADLVLLVLNSSEPLTEQDRTLLEISKNSNR--------IILLNKTDLPQAIQ 345
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKI----VGLHQIPAGGRRWAVNQRQCEQ 505
E D + + + I +E I ++ GL + A + N R
Sbjct: 346 MEELP-----EDVIPISVLKNENIDKIEDRINQLFFDNAGLVEKDA---TYLSNARHISL 397
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ R E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 IERALESLEAVNQGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 456
>gi|270289896|ref|ZP_06196122.1| tRNA modification GTPase TrmE [Pediococcus acidilactici 7_4]
gi|418070131|ref|ZP_12707408.1| tRNA modification GTPase TrmE [Pediococcus acidilactici MA18/5M]
gi|270281433|gb|EFA27265.1| tRNA modification GTPase TrmE [Pediococcus acidilactici 7_4]
gi|357536662|gb|EHJ20693.1| tRNA modification GTPase TrmE [Pediococcus acidilactici MA18/5M]
Length = 464
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 185/480 (38%), Positives = 270/480 (56%), Gaps = 30/480 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG + I+R+SG A+ + ++++ G + SH
Sbjct: 8 FDTIAAIST----PPGEGGISIIRISGVNALKVASQIYR----------GKDLAKVASHT 53
Query: 150 VEYGVVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG V+D + +DEV+ M AP +YT+EDVVE+ CHG V R+L+ L A L
Sbjct: 54 INYGHVVDPATDEEIDEVMVSVMRAPHTYTKEDVVEINCHGGIVATNRILQLILGLDARL 113
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQAE V LI AK+ + AL + G S L+ ++R ++
Sbjct: 114 AKPGEFTERAFLNGRIDLSQAEAVMDLIRAKTDQSMKVALDQLDGNLSHLIKNLRQDILD 173
Query: 269 LLTEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L ++E +D+ D++ + L+ +K + V L TA K+L+ GL AI+G
Sbjct: 174 VLAQVEVNIDYPEYDDVETMTTRLLKEKAIEVKAKVNQLLATAKQGKVLRDGLATAIIGH 233
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSS+LN ++AIVT++AGTTRDVIE V V GVP+ L+DTAGI ET+D VEKI
Sbjct: 234 PNVGKSSILNHLLHEDKAIVTDVAGTTRDVIEEYVNVQGVPLKLVDTAGIHETEDKVEKI 293
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GV+RS AD++I+ + + ED +LL++ + ++ I+V+NK D
Sbjct: 294 GVDRSRKALQQADLVILVLDSSVPLRDEDRQLLDQTANMQR--------IVVLNKTDLPT 345
Query: 447 SAS-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCE 504
+ NE K S + + + AV G +DLE I K+ I V N R
Sbjct: 346 KINLNELQKYA-SEAEIIKSSAVAPLGTKDLEDRIAKLFFAGSIENSSNNVMVTNARHIG 404
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L +T AL + IE +P+D ID+ A LG+I+G+ +E+L +F +FC+GK
Sbjct: 405 LLQQTVTALDSVLDGIEAGMPVDLVQIDMTRAWDLLGEITGDSYQDELLDQLFSQFCLGK 464
>gi|77407969|ref|ZP_00784719.1| tRNA modification GTPase TrmE [Streptococcus agalactiae COH1]
gi|421146881|ref|ZP_15606584.1| tRNA modification GTPase TrmE [Streptococcus agalactiae GB00112]
gi|77173427|gb|EAO76546.1| tRNA modification GTPase TrmE [Streptococcus agalactiae COH1]
gi|401686588|gb|EJS82565.1| tRNA modification GTPase TrmE [Streptococcus agalactiae GB00112]
Length = 458
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 179/481 (37%), Positives = 276/481 (57%), Gaps = 37/481 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVR+SG A+ I ++++ G SH +
Sbjct: 7 FDTIAAISTPLG--EGAIGIVRISGTDALKIASKIYR----------GKDLSAIQSHTLN 54
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N ++DEV+ MLAP+++TREDV+E+ HG +L+ L GA +A+
Sbjct: 55 YGHIVDPDKNEILDEVMLGVMLAPKTFTREDVIEINTHGGIAVTNEILQLILRHGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V LI AK+ A D A+ + G +L+ + R + + L
Sbjct: 115 PGEFTKRAFLNGRVDLTQAEAVMDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQEILNTL 174
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +EN L TA + K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTTTLMREKTQEFQALMENLLRTARHGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIR+TDDIVEKIGV
Sbjct: 235 VGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ +++ + T +D LL + S ES+ I+++NK D
Sbjct: 295 ERSKKALEEADLVLLVLNSSEPLTLQDRSLL------ELSKESNR--IVLLNKTDLPQKI 346
Query: 449 SNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQC 503
N ++V +V + I +E I I G+ + A + N R
Sbjct: 347 E------VNELPENVIPISVLENENIDKIEERINDIFFDNAGMVEHDA---TYLSNARHI 397
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
+ + ++L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+G
Sbjct: 398 SLIEKAVDSLKAVNEGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLG 457
Query: 564 K 564
K
Sbjct: 458 K 458
>gi|449999766|ref|ZP_21824681.1| tRNA modification GTPase TrmE [Streptococcus mutans N29]
gi|449186552|gb|EMB88376.1| tRNA modification GTPase TrmE [Streptococcus mutans N29]
Length = 455
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 172/476 (36%), Positives = 272/476 (57%), Gaps = 29/476 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVR+SG A+ I+ ++FK G SH +
Sbjct: 6 FDTITAIATPLG--EGAIGIVRISGSKALAIIKKIFK----------GKNLDDVPSHTIN 53
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ +G ++DEV+ M AP+++TREDV+E+ HG +L+ L +GA +A P
Sbjct: 54 YGHIIE-NGAIIDEVMVSVMRAPKTFTREDVIEINTHGGVAVTNEILQLVLRSGARMADP 112
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A+ + G S+L+ + R + + L
Sbjct: 113 GEFTKRAFLNGRVDLAQAEAVMDLIRAKTDKAMAVAVQQLDGSLSNLINNTRQEILNTLA 172
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + L+ +K + N L+TA K+L+ GL AI+GRPNV
Sbjct: 173 QVEVNIDYPEYDDVEEMTTALMREKTQEFETLLTNLLKTARRGKILREGLSTAIIGRPNV 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGVE
Sbjct: 233 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVE 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL Q++ + ++++NK D
Sbjct: 293 RSKKALEEADLVLLVLNSAEKLTDQDRTLLEISQNSNR--------LILLNKTDLP---- 340
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLH-QIPAGGRRWAVNQRQCEQLMR 508
E + D + + Q I +E I K+ + + + N R + +
Sbjct: 341 -EQIETDQLPEDCIKISVIKNQNIDVIEERINKLFFDNAAVVEKDATYLSNARHISLIEK 399
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 400 ALKSLQAVNDGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 455
>gi|323694902|ref|ZP_08109052.1| tRNA modification GTPase TrmE [Clostridium symbiosum WAL-14673]
gi|323500992|gb|EGB16904.1| tRNA modification GTPase TrmE [Clostridium symbiosum WAL-14673]
Length = 462
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 176/480 (36%), Positives = 276/480 (57%), Gaps = 29/480 (6%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
T TIAAI T++ +GI+R+SG A DIV R+F+P K+KK ++ V
Sbjct: 6 TSDTIAAIATAL--TNSGIGIIRVSGNEAFDIVDRIFRPKNKRKKLK------EEKTYTV 57
Query: 151 EYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG + D ++DEVLA+ M P SYT ED VE+ CHG + ++++L ++ GA +A+
Sbjct: 58 HYGHIQD-GDEIIDEVLAIVMRGPHSYTAEDTVEIDCHGGVLVMKKILETVIKYGARMAE 116
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I++K+ A ++++ + G S V +R K + +
Sbjct: 117 PGEFTKRAFLNGRIDLSQAEAVIDVINSKNNYALKSSVSQLSGSMSKKVKELREKLLFEI 176
Query: 271 TEIEARLDFDDEMP----PLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
IE+ LD + + P L + ++ M +++ A+ T + ++L G++ I+G+
Sbjct: 177 AFIESALDDPEHISLDGYPEKLKVT---VNDMQEELNRAISTFDSGRVLSEGIRTVILGK 233
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PN GKSSL+N ERAIVT+IAGTTRD +E ++ + G+ + ++DTAGIRET+D+VEKI
Sbjct: 234 PNAGKSSLMNVLVGEERAIVTDIAGTTRDTLEENIRLHGISLNIVDTAGIRETEDVVEKI 293
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GV+++ A A AD++I V D +++N I+ K I+++NK D
Sbjct: 294 GVDKARANADDADLLIYVVDGSCPLDENDYQIMNLIEGRKS--------IVLLNKTDLEM 345
Query: 447 SASNEW--NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCE 504
+ E K G V A +GI LE I ++ +I N R
Sbjct: 346 VLTPEEIKEKTGKEV---VAVSAKEQRGIDLLEEKIKELFLSGEIDFNDEVMITNVRHKT 402
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++L +K SIE+++P DF++IDL +A LG I GE + +++++ IF KFC+GK
Sbjct: 403 AMSEALKSLSLVKQSIEDQMPEDFYSIDLMNAYEQLGTIIGESLEDDLVNEIFNKFCMGK 462
>gi|422759100|ref|ZP_16812862.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322411935|gb|EFY02843.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 458
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 177/480 (36%), Positives = 271/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+ I VFK G + SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTDALAIAQSVFK----------GKNLEQVASHTIN 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G +VDEV+ MLAP+++TRE+V+E+ HG +L+ + GA +A+
Sbjct: 55 YGHIVDPKTGTIVDEVMVSVMLAPKTFTRENVIEINTHGGIAVTNEILQLLIRQGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A A+ + G S L+ R + + L
Sbjct: 115 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTL 174
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + ++N L TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTTALLREKTQEFQKLLKNLLRTAKRGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 235 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D LL Q + + I+++NK D
Sbjct: 295 ERSKKALQEADLVLLVLNASEPLTDQDRSLLYLSQDSNR--------IILLNKTDLEQKI 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E D + +T I +E I ++ GL + A + N R
Sbjct: 347 ELEQLPA-----DLIPISVLTNHNIDLIEDRINQLFFDNAGLVEQDA---TYLSNARHIS 398
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + + +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 399 LIEKAVQSLEAVNDGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458
>gi|414155417|ref|ZP_11411729.1| tRNA modification GTPase mnmE [Streptococcus sp. F0442]
gi|410873390|gb|EKS21325.1| tRNA modification GTPase mnmE [Streptococcus sp. F0442]
Length = 457
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 174/480 (36%), Positives = 273/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSKVASHTLN 53
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N ++DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPDKNEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQLVIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQELLNTL 173
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ ++ +K + N L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTEIIREKTTEFEALLTNLLKTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 234 VGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAGIRETEDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q + + I+++NK+D
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTDQDRQLLEISQDSNR--------IILLNKVDLP--- 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLE----TAIMKIVGLHQIPAGGRRWAVNQRQCE 504
E ++ DH+ + Q I +E T + GL + A + N R
Sbjct: 343 --EKIEIDQLPEDHIKISVLKNQNIDQIEDRINTLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + + +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|154503056|ref|ZP_02040116.1| hypothetical protein RUMGNA_00878 [Ruminococcus gnavus ATCC 29149]
gi|153796297|gb|EDN78717.1| tRNA modification GTPase TrmE [Ruminococcus gnavus ATCC 29149]
Length = 458
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 174/475 (36%), Positives = 273/475 (57%), Gaps = 25/475 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI S G +GIVR+SG A I+ R++K K++ S + SH + YG
Sbjct: 5 TIAAI--STGMTNSGIGIVRISGEEAFAIIDRIYKG----KEQLS-----QAESHTIHYG 53
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ DR +DEVL M APR++T ED VE+ CHG +R+VL ++ GA A+PGE
Sbjct: 54 FIKDRE-ETIDEVLVSVMRAPRTFTGEDTVEINCHGGTFVVRKVLETVIKNGARPAEPGE 112
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNG++DLSQAE V +I++++ A ++++ ++G + +R + + I
Sbjct: 113 FTKRAFLNGKMDLSQAEAVIDVITSQNEYALKSSMSQLKGSVKRKIEEMRKEILYHTAFI 172
Query: 274 EARLDFDDEMPPLNLNLVMDKI-HAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
E LD + + + + + +++E+ + +++ ++L+ G+Q IVG+PN GKS
Sbjct: 173 ETALDDPEHISVDGYGETLQTVTEGILRELEDLIRSSDDGRILKEGIQTVIVGKPNAGKS 232
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLN S ERAIVT+I GTTRDV+E + + G+ + ++DTAGIR+T+D++EK+GVE+++
Sbjct: 233 SLLNVLSGRERAIVTDIEGTTRDVLEEQIHLQGLSLNIIDTAGIRDTEDVIEKMGVEKAK 292
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
A AD++I V A D ++LN + K I+++NK D S E
Sbjct: 293 EYAKSADLVIYVVDASRSLDENDQKILNLVLDKK--------AIILLNKTDLETVVSKEM 344
Query: 453 ---NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+G + A GIQ+LE + K+ + + N RQ L
Sbjct: 345 LAEQLLGREI-PMIEISAKEELGIQELEKTLEKMFLKGSLSFNDEIYITNIRQKAALQSA 403
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+E+L ++ SIE E+P DF++IDL DA +LG I+GE I E++++ IF KFC+GK
Sbjct: 404 RESLHKVIESIENEMPEDFYSIDLMDAYESLGSITGETIGEDLVNEIFSKFCMGK 458
>gi|421452450|ref|ZP_15901811.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Streptococcus salivarius K12]
gi|400182881|gb|EJO17143.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Streptococcus salivarius K12]
Length = 456
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 176/479 (36%), Positives = 271/479 (56%), Gaps = 35/479 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+ I +VFK G TSH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTDAIAIANKVFK----------GKNLESVTSHTIN 54
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ +DEV+ M AP+++TREDVVE+ HG +L+ + +GA +A+P
Sbjct: 55 YGHIVENE-ETIDEVMVSVMRAPKTFTREDVVEINTHGGVAVTNEILQLLIRSGARMAEP 113
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A++ + G L+ + R + + L
Sbjct: 114 GEFTKRAFLNGRVDLTQAEAVMDLIRAKTDKAMAVAVSQLDGSLKDLINNTRQEILNTLA 173
Query: 272 EIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + LV +K +EN L TA K+L+ GL AI+GRPNV
Sbjct: 174 QVEVNIDYPEYDDVEEVTTALVREKTQEFQALLENLLATAKRGKILREGLSTAIIGRPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIR+TDD+VEKIGVE
Sbjct: 234 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVE 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL +++ + I+++NK D +
Sbjct: 294 RSKKALEEADLVLLVLNSSEPLTEQDRTLLEISKNSNR--------IILLNKTDLPQAIQ 345
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCEQ 505
E D + + + I +E I ++ GL + A + N R
Sbjct: 346 MEELP-----EDIIPISVLKNENIDKIEDRINQLFFDNAGLVEKDA---TYLSNARHISL 397
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 IEKALESLEAVNQGLELGMPVDLLQVDMTRTWEVLGEITGDAAPDELITQLFSQFCLGK 456
>gi|237743154|ref|ZP_04573635.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. 7_1]
gi|229433450|gb|EEO43662.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. 7_1]
Length = 455
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 171/480 (35%), Positives = 279/480 (58%), Gaps = 34/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T G G + IVR+SG +++I+ ++F+P KK + +
Sbjct: 3 LDTIAAISTPRG--EGGISIVRMSGQDSLNILEKIFRPKNKKVSELKNCS--------IN 52
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG ++D ++VDEVL M AP +YTRED+VE+ CHG + +VL L+ GA +A+
Sbjct: 53 YGHIIDNE-HIVDEVLVSIMKAPNTYTREDIVEINCHGGFLVTEKVLEVVLKNGARIAEI 111
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V +I K+ + +L ++G + +++ ++L
Sbjct: 112 GEFTKRAFLNGRIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAA 171
Query: 272 EIEARLDF-----DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
I LD+ DD +P NLV D + S ++++ + + + K+++ G++ AI+G+
Sbjct: 172 HINVVLDYPEEGIDDPVPE---NLV-DNLKKASAEIKDLVSSYDKGKIIKDGIKTAIIGK 227
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSS+LN+ + +RAIVT I GTTRD+IE + + G+P+ L+DTAGIR TDDI+E I
Sbjct: 228 PNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIIENI 287
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVE+S+ + AD+I+ + ED + + I ++K +I ++NKID
Sbjct: 288 GVEKSKELINSADLILYVIDTSRKIDEEDFRIYDIINTDK--------VIGILNKIDIKK 339
Query: 447 SAS-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCE 504
++++K+ V A++ GI +LE I K + I ++ + N R
Sbjct: 340 DIDLSKFSKI----EKWVEISALSKIGIDNLENEIYKFIMNENIEDSSQKLVITNVRHKS 395
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L +T EAL+ + +I++ P+D +D++DA +L +++GE SE++L +IF FC+GK
Sbjct: 396 ALEKTNEALLNIIETIDKGFPMDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455
>gi|365852799|ref|ZP_09393145.1| tRNA modification GTPase TrmE [Lactobacillus parafarraginis F0439]
gi|363714012|gb|EHL97565.1| tRNA modification GTPase TrmE [Lactobacillus parafarraginis F0439]
Length = 464
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 176/479 (36%), Positives = 273/479 (56%), Gaps = 28/479 (5%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG + IVR+SG A D+ ++++ G + S+
Sbjct: 8 FDTIAAIST----PPGEGGISIVRISGEEAFDVAKKLYR----------GKNLDKVASNT 53
Query: 150 VEYGVVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D + +DEV+ M AP +YT+ED++E+ CHG V R+L+ L GA +
Sbjct: 54 INYGHIVDPDTHEEIDEVMLSVMRAPHTYTKEDIIEINCHGGIVATNRILQLILSHGARM 113
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQ+E V LI AK+ + AA++ + G S L+ +R ++
Sbjct: 114 AEPGEFTKRAFLNGRIDLSQSEAVMDLIEAKTDRSMKAAISQLDGNLSHLIKHLRKDILD 173
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L ++E +D+ D++ + L+ +K + ++ LETA K+L+ GL +I+GR
Sbjct: 174 VLAQVEVNIDYPEYDDVETMTSKLLREKATDVHARIDQLLETAKQGKILRDGLATSIIGR 233
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN ++AIVT++ GTTRDV+E V GVP+ L+DTAGIRET D VEKI
Sbjct: 234 PNVGKSSLLNHLLHEDKAIVTDVPGTTRDVLEEYANVRGVPLKLVDTAGIRETTDKVEKI 293
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GV+RS AD++++ ++A + T ED +L IQ+ K I+++NK D
Sbjct: 294 GVDRSRKAIDSADLVLLVLNASEALTDEDRQL---IQATDKKQR-----IVILNKTDLPV 345
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCEQ 505
+ K ++ + T A+ G++ LE I K+ I V N R
Sbjct: 346 KLDVDEVKRLTKPSNIISTSAIKADGLKGLEEIIAKMFFGEGIANSQNDVVVTNARHIGL 405
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + K+AL + ++E +P+D ID+ LG+I+G+ +E++ +F +FC+GK
Sbjct: 406 LNQAKQALEDVIKGLDEGMPVDLVQIDMTRCWDFLGEITGDSYQDELIDQLFSQFCLGK 464
>gi|333905163|ref|YP_004479034.1| tRNA modification GTPase TrmE [Streptococcus parauberis KCTC 11537]
gi|333120428|gb|AEF25362.1| tRNA modification GTPase TrmE [Streptococcus parauberis KCTC 11537]
Length = 488
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 175/480 (36%), Positives = 271/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A+DI VFK G SH +
Sbjct: 37 FDTITAISTPLG--EGAIGIVRLSGGQALDIAKSVFK----------GKDLASVASHTIN 84
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG +LD ++DEV+ M P+++TREDVVE+ HG +L+ ++ GA +A+
Sbjct: 85 YGHILDPDKDEILDEVMVSVMREPKTFTREDVVEINTHGGIAVTNEILQLLIKHGARMAE 144
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G L+ + R + + L
Sbjct: 145 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLKQLIDATRQEILNTL 204
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +EN L TA K+L+ GL AI+GRPN
Sbjct: 205 AQVEVNIDYPEYDDVEEMTTALMREKTQEFQTLLENLLRTARRGKILREGLSTAIIGRPN 264
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+IAGTTRDVIE V + GVP+ L+DTAGIR+T+D+VEKIGV
Sbjct: 265 VGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRDTEDVVEKIGV 324
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D LL+ Q + + I+++NK D
Sbjct: 325 ERSKKALNEADLVLLVLNASEKLTEQDHILLDLSQDSNR--------IILLNKTDLEVQI 376
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
+ +D++ + + I +E I ++ GL + A + N R
Sbjct: 377 EKDQLP-----SDYIEISVLNNENIDQIEDRINQLFFDNAGLVEHDA---TYLSNARHIS 428
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + + +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 429 LIEKAVQSLQAVNDGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 488
>gi|444383767|ref|ZP_21181949.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PCS8106]
gi|444386411|ref|ZP_21184468.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PCS8203]
gi|444247754|gb|ELU54285.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PCS8203]
gi|444248421|gb|ELU54929.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae PCS8106]
Length = 479
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 178/480 (37%), Positives = 275/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 28 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLNKVASHTLN 75
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 76 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 135
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ ++R + + L
Sbjct: 136 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTL 195
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + L TA K+L+ G+ AI+GRPN
Sbjct: 196 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPN 255
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 256 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 315
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ A+++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 316 ERSKKALKEANLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 367
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 368 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLIEQDA---TYLSNARHIS 419
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 420 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 479
>gi|419495438|ref|ZP_14035156.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47461]
gi|421303228|ref|ZP_15753892.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17484]
gi|379595520|gb|EHZ60328.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47461]
gi|395901850|gb|EJH12786.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17484]
Length = 457
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 178/480 (37%), Positives = 275/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ ++R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ A+++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEANLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 346 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLIEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITKLFSQFCLGK 457
>gi|418976741|ref|ZP_13524597.1| tRNA modification GTPase TrmE [Streptococcus mitis SK575]
gi|383351074|gb|EID28905.1| tRNA modification GTPase TrmE [Streptococcus mitis SK575]
Length = 457
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 273/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIVAISTPLG--EGAIGIVRLSGTESFAIAQKIFK----------GKVLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLKTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D P A
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDL-PEA 344
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
+ D + + Q I +E I + GL + A + N R
Sbjct: 345 I----ETSELPEDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|149019612|ref|ZP_01834931.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP23-BS72]
gi|387626368|ref|YP_006062543.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae INV104]
gi|417693942|ref|ZP_12343130.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47901]
gi|418102879|ref|ZP_12739953.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae NP070]
gi|418189253|ref|ZP_12825768.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47373]
gi|419475409|ref|ZP_14015249.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA14688]
gi|419486566|ref|ZP_14026331.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44128]
gi|421208837|ref|ZP_15665858.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070005]
gi|421224886|ref|ZP_15681629.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070768]
gi|421240573|ref|ZP_15697119.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2080913]
gi|147930987|gb|EDK81967.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP23-BS72]
gi|301794153|emb|CBW36563.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae INV104]
gi|332202879|gb|EGJ16947.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47901]
gi|353775512|gb|EHD55992.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae NP070]
gi|353856395|gb|EHE36364.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47373]
gi|379560954|gb|EHZ25975.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA14688]
gi|379587199|gb|EHZ52048.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA44128]
gi|395575175|gb|EJG35745.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070005]
gi|395590364|gb|EJG50671.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070768]
gi|395608364|gb|EJG68458.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2080913]
Length = 457
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 178/480 (37%), Positives = 275/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ ++R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ A+++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEANLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 346 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLIEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|337288150|ref|YP_004627622.1| tRNA modification GTPase mnmE [Thermodesulfobacterium sp. OPB45]
gi|334901888|gb|AEH22694.1| tRNA modification GTPase mnmE [Thermodesulfobacterium geofontis
OPF15]
Length = 466
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 189/491 (38%), Positives = 286/491 (58%), Gaps = 42/491 (8%)
Query: 88 KAGTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRP-- 145
K T TIAAI T G GA+G++++SG +++ I+ ++F+P +RP
Sbjct: 4 KLYTEDTIAAIATPPGK--GAIGVIKISGDLSLSILKKIFRP-------------FRPRS 48
Query: 146 --TSHVVEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACL 202
SH + YG ++D R V+DEVL V M P++YTREDVVE+ H LR++L L
Sbjct: 49 EFESHKLYYGFIVDPRDEKVIDEVLVVYMKKPKTYTREDVVEIYAHSGYYILRKILELVL 108
Query: 203 EAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSV 262
AGA A+PGEFTLRA+LNGR+DLSQAE +++L+SAK+ A + AL + G S+ + ++
Sbjct: 109 MAGARPAEPGEFTLRAYLNGRIDLSQAEAIQELVSAKTETALNLALNTLLGKLSNKINAL 168
Query: 263 RAKCIELLTEIEARLDFDDE----MPPLNLNL-VMDKIHAMSQDVENALETANYDKLLQS 317
+ +E+L +E+ +DF +E M P L+ + +KI + +E ++ K+ +
Sbjct: 169 KNDLLEILVLVESAIDFPEEDIEIMEPEKLSQKIKEKILPV---IEELIKNYEEGKIYKE 225
Query: 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIR 377
G+ + I G+PNVGKSSL+NA K ERAIVT I GTTRD +E T+ G+PV L+DTAG+R
Sbjct: 226 GISLVIAGKPNVGKSSLMNALLKEERAIVTPIPGTTRDFLEEEATIEGLPVKLIDTAGLR 285
Query: 378 ETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMIL 437
ET+DIVEKIGVER++ AD+I+ V + +SED ++ ++ + ++
Sbjct: 286 ETEDIVEKIGVERAKKKFKEADLILFLVDVSEHPSSEDYKIYQEVK--------NFSHLV 337
Query: 438 VINKIDCAPSASNEWNKVGNSFN-DHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRW 496
++NKID P+ EW +V + D V +V + I +L+ KI G
Sbjct: 338 ILNKIDIQPNHIKEWKEVLLKWGIDEVLEISVK-ENI-NLDKLCKKIFEKITSEKGAHVP 395
Query: 497 AV--NQRQCEQLMRTKEALVRLKSSIEEELPL-DFWTIDLRDAALALGQISGEDISEEVL 553
V N RQ L KE L+ +E++ PL + I++R A +L +I GE +E++L
Sbjct: 396 EVVPNLRQKIALENAKEYLLNALRELEKKDPLPELIAIEIRSAISSLSEIIGEVTTEDLL 455
Query: 554 SNIFGKFCIGK 564
+ IF FCIGK
Sbjct: 456 TQIFSTFCIGK 466
>gi|403045142|ref|ZP_10900620.1| tRNA modification GTPase TrmE [Staphylococcus sp. OJ82]
gi|402765206|gb|EJX19290.1| tRNA modification GTPase TrmE [Staphylococcus sp. OJ82]
Length = 460
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 171/476 (35%), Positives = 264/476 (55%), Gaps = 22/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TI +I T +G GA+GIVRLSG AV++ ++FK +K TSH +
Sbjct: 4 LDTITSISTPMG--EGAIGIVRLSGADAVNVADKLFKGKQK---------LVDVTSHTIN 52
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D V++EV+ + AP+++TRED+VE+ CHG + + RVL + GA +A+
Sbjct: 53 YGHIIDPESEEVIEEVMVSVLRAPKTFTREDIVEINCHGGILTINRVLELTMSNGARMAE 112
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S ++ R +E+L
Sbjct: 113 PGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDMIKRQRQSILEIL 172
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ ++ K + +++ LET K+++ GL IVG+PN
Sbjct: 173 AQVEVNIDYPEYDDVEDATTEFLLGKSSEIKEEINKLLETGTQGKIMREGLSTVIVGKPN 232
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSS+LN + +AIVTE+ GTTRD +E V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 233 VGKSSMLNNLIQDNKAIVTEVPGTTRDTLEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 292
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD+I+ ++ + + ED +L I++ I+++NK+D
Sbjct: 293 ERSRKALGEADLILFVLNYNEALSEEDRKLYEVIKNEDA--------IVIVNKMDLDKQL 344
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ KV + T + +GI LE I + + + N R L
Sbjct: 345 DIDEVKVMVGDMPLIQTSMLKQEGIDQLEIQIRDLFFGGDVQNQDMTYVSNSRHISLLKE 404
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + + E ++P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 405 ARNTIQDAIDAAESDIPMDMIQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 460
>gi|419799690|ref|ZP_14325022.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis F0449]
gi|385697436|gb|EIG27861.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis F0449]
Length = 457
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 174/480 (36%), Positives = 273/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSKVASHTLN 53
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N ++DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPDKNEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQLVIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ ++ +K + N L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTEIIREKTSEFEALLTNLLKTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 234 VGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAGIRETEDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q + + I+++NK+D
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTDQDRQLLEISQDSNR--------IILLNKVDLP--- 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E ++ DH+ + Q I +E I + GL + A + N R
Sbjct: 343 --EKIEIDQLPEDHIKISVLKNQNIDQIEDRINALFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + + +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|160893418|ref|ZP_02074203.1| hypothetical protein CLOL250_00967 [Clostridium sp. L2-50]
gi|156864813|gb|EDO58244.1| tRNA modification GTPase TrmE [Clostridium sp. L2-50]
Length = 459
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 182/478 (38%), Positives = 276/478 (57%), Gaps = 29/478 (6%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
TIAAI T +G VGI+R+SG AV++ +VF+P K+KK S S+ +
Sbjct: 5 DTIAAIATGMGNA--GVGIIRISGKNAVEVASKVFRPANKEKKIES------MKSYTAAF 56
Query: 153 GVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
G V D + DE + + M AP +YT EDV ELQCHG V LR VL A ++ GA LA+PG
Sbjct: 57 GQVYDGDKEL-DEGILLLMRAPHTYTCEDVCELQCHGGMVVLRNVLAAVIKNGARLAEPG 115
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQAE+V LISAK+ A ++L ++G + + +R + + +
Sbjct: 116 EFTKRAFLNGRIDLSQAESVMDLISAKNDFAVKSSLMQLRGDLKNQIIDMREQILYNVAF 175
Query: 273 IEARLD----FDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
IE+ LD + + P L ++DK + +V+ L T + ++L+ G++ IVG+PN
Sbjct: 176 IESALDDPEHYSLDGYPQKLQTIVDK---LGDNVDKLLRTFDNGRILKEGIKTVIVGKPN 232
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
GKSSLLN + RAIVT+IAGTTRD +E V + G+ + ++DTAGIR+T+DIVEK+GV
Sbjct: 233 AGKSSLLNMFLGENRAIVTDIAGTTRDTLEEVVNINGIILNIVDTAGIRDTEDIVEKMGV 292
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
+++ A AD+I+ + D ++++ I+ +I V+NK D
Sbjct: 293 DKALEFASQADLILYVIDGSVPLDDNDKQIISEIKGKN--------VIAVMNKNDLQTVV 344
Query: 449 SNEW--NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
W ++G D V A TG G + L + ++ + + N R E+L
Sbjct: 345 DKMWITCELG---CDIVELSASTGDGKEKLYDLLNDKFFSGELDYNDQLYITNARHKEEL 401
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
M+T+E+L++++ SI+ + DF++IDL DA LG I GE +++ IF +FC+GK
Sbjct: 402 MKTEESLLKVRESIDMGMEEDFFSIDLMDAYEHLGLIIGETNRDDLADKIFEEFCMGK 459
>gi|400290457|ref|ZP_10792484.1| tRNA modification GTPase TrmE [Streptococcus ratti FA-1 = DSM
20564]
gi|399921248|gb|EJN94065.1| tRNA modification GTPase TrmE [Streptococcus ratti FA-1 = DSM
20564]
Length = 455
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 175/476 (36%), Positives = 272/476 (57%), Gaps = 29/476 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVR+SG A+ I ++FK G SH +
Sbjct: 6 FDTITAIATPLG--EGAIGIVRISGSEALAITKKIFK----------GKNLDNVPSHTIN 53
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ +G ++DEV+ M AP+++TREDV+E+ HG +L+ + +GA +A+P
Sbjct: 54 YGHIVE-NGEIIDEVMVSVMRAPKTFTREDVIEINTHGGVAVTNEILQLVIRSGARMAEP 112
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A+ + G S+L+ + R + + L
Sbjct: 113 GEFTKRAFLNGRVDLAQAEAVMDLIRAKTDKAMAIAVQQLDGSLSNLINNTRQEILNTLA 172
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + L+ +K + N L+TA K+L+ GL AI+GRPNV
Sbjct: 173 QVEVNIDYPEYDDVEEMTTALMREKTQEFETLLTNLLKTARRGKILREGLSTAIIGRPNV 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGVE
Sbjct: 233 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVE 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL+ +++S +IL +NK D
Sbjct: 293 RSKKALEEADLVLLVLNSAEKLTDQDRALLD-------ISKNSNRLIL-LNKTDLP---- 340
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPA-GGRRWAVNQRQCEQLMR 508
E + ND + + Q I +E I I + + N R + +
Sbjct: 341 -EQIETDQLPNDCIKISVLNNQNIDAIEERINDIFFDNAASVEKDATYLSNARHISLIEQ 399
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 400 ALESLHAVNEGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 455
>gi|336434148|ref|ZP_08613951.1| tRNA modification GTPase mnmE [Lachnospiraceae bacterium 2_1_58FAA]
gi|336014527|gb|EGN44374.1| tRNA modification GTPase mnmE [Lachnospiraceae bacterium 2_1_58FAA]
Length = 458
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 174/475 (36%), Positives = 273/475 (57%), Gaps = 25/475 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI S G +GIVR+SG A I+ R++K K++ S + SH + YG
Sbjct: 5 TIAAI--STGMTNSGIGIVRISGEEAFAIIDRIYKG----KEQLS-----QAESHTIHYG 53
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ DR +DEVL M APR++T ED VE+ CHG +R+VL ++ GA A+PGE
Sbjct: 54 FIKDRE-ETIDEVLVSVMRAPRTFTGEDTVEINCHGGTFVVRKVLETVIKNGARPAEPGE 112
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNG++DLSQAE V +I++++ A ++++ ++G + +R + + I
Sbjct: 113 FTKRAFLNGKMDLSQAEAVIDVITSQNEYALRSSMSQLKGSVKRKIEEMRKEILYHTAFI 172
Query: 274 EARLDFDDEMPPLNLNLVMDKI-HAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
E LD + + + + + +++E+ + +++ ++L+ G+Q IVG+PN GKS
Sbjct: 173 ETALDDPEHISVDGYGETLQTVTEGILRELEDLIRSSDDGRILKEGIQTVIVGKPNAGKS 232
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLN S ERAIVT+I GTTRDV+E + + G+ + ++DTAGIR+T+D++EK+GVE+++
Sbjct: 233 SLLNVLSGRERAIVTDIEGTTRDVLEEQIHLQGLSLNIIDTAGIRDTEDVIEKMGVEKAK 292
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
A AD++I V A D ++LN + K I+++NK D S E
Sbjct: 293 EYAKSADLVIYVVDASRSLDENDQKILNLVLDKK--------AIILLNKTDLETVVSKEM 344
Query: 453 ---NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+G + A GIQ+LE + K+ + + N RQ L
Sbjct: 345 LAEQLLGREI-PMIEISAKEELGIQELEKTLEKMFLKGSLSFNDEIYITNIRQKAALQSA 403
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+E+L ++ SIE E+P DF++IDL DA +LG I+GE I E++++ IF KFC+GK
Sbjct: 404 RESLHKVIESIENEMPEDFYSIDLMDAYESLGSITGETIGEDLVNEIFSKFCMGK 458
>gi|260588823|ref|ZP_05854736.1| tRNA modification GTPase TrmE [Blautia hansenii DSM 20583]
gi|331083514|ref|ZP_08332626.1| tRNA modification GTPase mnmE [Lachnospiraceae bacterium 6_1_63FAA]
gi|260540602|gb|EEX21171.1| tRNA modification GTPase TrmE [Blautia hansenii DSM 20583]
gi|330404207|gb|EGG83755.1| tRNA modification GTPase mnmE [Lachnospiraceae bacterium 6_1_63FAA]
Length = 457
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 173/475 (36%), Positives = 279/475 (58%), Gaps = 25/475 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAA+ T++ +GI+R+SGP + +I G++++ KK+ + SH ++YG
Sbjct: 4 TIAAVATAM--TASGIGIIRISGPKSREIAGKIYRSKGGKKRIEN------VPSHTIQYG 55
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ D ++DEVL + M APRSYT E+ VE+ CHG + ++RVL ++ GA A+PGE
Sbjct: 56 FICDED-EIIDEVLVMVMDAPRSYTGENTVEIDCHGGVLAMKRVLETVVKYGARPAEPGE 114
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGR+DLSQAE V +I+AK+ A ++++ ++G ++ +R I + I
Sbjct: 115 FTKRAFLNGRIDLSQAEAVIDVINAKNEYALKSSISQLRGNIQRVIKEIRQGIIYQIAYI 174
Query: 274 EARLDFDDEMPPLNL--NLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
E+ LD D E ++ + + +I + + + L+T KL++ G++ IVG+PN GK
Sbjct: 175 ESALD-DPEHISIDGYGDTLKGEISLLKEKLNGLLDTVREGKLMKEGIKTVIVGKPNAGK 233
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLN ERAIVT+IAGTTRD++E ++ + G+ + ++DTAGIR+TDD+VEKIGV+++
Sbjct: 234 SSLLNLLVGEERAIVTDIAGTTRDILEETIVLHGISLRMIDTAGIRDTDDVVEKIGVKKA 293
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
A AD+I+ V + D E++ ++ K I+++NK+D + E
Sbjct: 294 VENAKDADLILYVVDSSVPLDENDKEIIELLKDKK--------AIVILNKMDLQQQVTEE 345
Query: 452 WNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
K +H V A +GI+ LE I ++ + + N R +
Sbjct: 346 DLK---EKTNHPVVAVSAKEEEGIEFLEAKIKEMFFEGNLSFNDEIYITNMRHKAAIEDA 402
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K +L +++SIE ++P DF++IDL +A ALG I GE + E++++ IF KFC GK
Sbjct: 403 KRSLELVENSIEMQMPEDFFSIDLMNAYEALGSIIGESVGEDLVNEIFSKFCTGK 457
>gi|325104167|ref|YP_004273821.1| tRNA modification GTPase trmE [Pedobacter saltans DSM 12145]
gi|324973015|gb|ADY51999.1| tRNA modification GTPase trmE [Pedobacter saltans DSM 12145]
Length = 455
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 175/474 (36%), Positives = 275/474 (58%), Gaps = 29/474 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI A+ T +G GA+G++RLSGP A+ I +VFK G + SH V +G
Sbjct: 8 TIVALATPVGA--GAIGVIRLSGPDAIKITNKVFK----------GKDLEKQDSHTVHFG 55
Query: 154 VVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+ R G+ ++DEVL +AP+SYT+E++VE+ CHGS + +++ + GA A+PG
Sbjct: 56 TI--REGDLIIDEVLVSLFVAPKSYTKENIVEISCHGSSYIIENIIKLMIRNGARGAKPG 113
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFTLRAFLNG LDLSQAE V LI++ S + A+ ++GGFSS + ++R + I +
Sbjct: 114 EFTLRAFLNGGLDLSQAEAVADLIASSSETSHQLAMKQMRGGFSSELKNLRDQLIHFASM 173
Query: 273 IEARLDFDDE-MPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IE LDF +E + N + I + + ++ + + + +L++G+ + I G+PNVGK
Sbjct: 174 IELELDFSEEDVEFANRGQLKQLILDIQKVLDKLITSFDQGNVLKNGVPVVIAGKPNVGK 233
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
S+LLNA ERAIV++IAGTTRD IE + V GV +DTAGIRET D++E GVER+
Sbjct: 234 STLLNALLNEERAIVSDIAGTTRDTIEDEINVKGVIFRFIDTAGIRETQDVIEAKGVERT 293
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
A +++ + + E L+ +++ + P +LV+NK D + E
Sbjct: 294 LEKIKQARLLVYLADPIQDDFAAVKEQLDEVKA------YNIPYLLVVNKKDLLSAEQIE 347
Query: 452 -WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
++++ +F A G+ +L+ +++IV L + + + N R E L +T
Sbjct: 348 AYSQLS-----PLFISAKNNLGVDELKDRLLEIVNLANLNSEDVMVS-NIRHVEALQKTH 401
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
EALVR+ I+ + DF +D+R + LG+I+GE ++++L NIF KFCIGK
Sbjct: 402 EALVRVLYGIDNPVASDFLAMDIRQSLYHLGEITGEVTTDDLLDNIFSKFCIGK 455
>gi|323486760|ref|ZP_08092079.1| hypothetical protein HMPREF9474_03830 [Clostridium symbiosum
WAL-14163]
gi|323399899|gb|EGA92278.1| hypothetical protein HMPREF9474_03830 [Clostridium symbiosum
WAL-14163]
Length = 462
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 176/480 (36%), Positives = 276/480 (57%), Gaps = 29/480 (6%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
T TIAAI T++ +GI+R+SG A DIV R+F+P K+KK ++ V
Sbjct: 6 TSDTIAAIATAL--TNSGIGIIRVSGNEAFDIVDRIFRPKNKRKKLK------EEKTYTV 57
Query: 151 EYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG + D ++DEVLA+ M P SYT ED VE+ CHG + ++++L ++ GA +A+
Sbjct: 58 HYGHIQD-GDEIIDEVLAIIMRGPHSYTAEDTVEIDCHGGVLVMKKILETVIKYGARMAE 116
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I++K+ A ++++ + G S V +R K + +
Sbjct: 117 PGEFTKRAFLNGRIDLSQAEAVIDVINSKNNYALKSSVSQLSGSMSKKVKELREKLLFEI 176
Query: 271 TEIEARLDFDDEMP----PLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
IE+ LD + + P L + ++ M +++ A+ T + ++L G++ I+G+
Sbjct: 177 AFIESALDDPEHISLDGYPEKLKVT---VNDMQEELNRAISTFDSGRVLSEGIRTVILGK 233
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PN GKSSL+N ERAIVT+IAGTTRD +E ++ + G+ + ++DTAGIRET+D+VEKI
Sbjct: 234 PNAGKSSLMNVLVGEERAIVTDIAGTTRDTLEENIRLHGISLNIVDTAGIRETEDVVEKI 293
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GV+++ A A AD++I V D +++N I+ K I+++NK D
Sbjct: 294 GVDKARANADDADLLIYVVDGSCPLDENDYQIMNLIEGRKS--------IVLLNKTDLEM 345
Query: 447 SASNEW--NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCE 504
+ E K G V A +GI LE I ++ +I N R
Sbjct: 346 VLTPEEIKEKTGKEV---VAVSAKEQRGIDLLEEKIKELFLSGEIDFNDEVMITNVRHKT 402
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++L +K SIE+++P DF++IDL +A LG I GE + +++++ IF KFC+GK
Sbjct: 403 AMSEALKSLSLVKQSIEDQMPEDFYSIDLMNAYEQLGTIIGESLEDDLVNEIFNKFCMGK 462
>gi|449965274|ref|ZP_21811807.1| tRNA modification GTPase TrmE [Streptococcus mutans 15VF2]
gi|449171525|gb|EMB74185.1| tRNA modification GTPase TrmE [Streptococcus mutans 15VF2]
Length = 455
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 172/476 (36%), Positives = 272/476 (57%), Gaps = 29/476 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVR+SG A+ I+ ++FK G SH +
Sbjct: 6 FDTITAIATPLG--EGAIGIVRISGSKALAIIKKIFK----------GKNLDDVPSHTIN 53
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ +G ++DEV+ M AP+++TREDV+E+ HG +L+ L +GA +A P
Sbjct: 54 YGHIVE-NGAIIDEVMVSVMRAPKTFTREDVIEINTHGGVTVTNEILQLVLRSGARMADP 112
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A+ + G S+L+ + R + + L
Sbjct: 113 GEFTKRAFLNGRVDLAQAEAVMDLIRAKTDKAMAVAVQQLDGSLSNLINNTRQEILNTLA 172
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + L+ +K + N L+T+ K+L+ GL AI+GRPNV
Sbjct: 173 QVEVNIDYPEYDDVEEMTTALMREKTQEFETLLTNLLKTSRRGKILREGLSTAIIGRPNV 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGVE
Sbjct: 233 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVE 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL Q++ + ++++NK D
Sbjct: 293 RSKKALEEADLVLLVLNSAEKLTDQDRTLLEISQNSNR--------LILLNKTDLP---- 340
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLH-QIPAGGRRWAVNQRQCEQLMR 508
E + D + + Q I +E I K+ + I + N R + +
Sbjct: 341 -EQIETDQLPEDCIKISVIKNQNIDVIEERINKLFFDNATIVEKDATYLSNARHISLIEK 399
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 400 ALKSLQAVNDGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 455
>gi|392961586|ref|ZP_10327042.1| tRNA modification GTPase mnmE [Pelosinus fermentans DSM 17108]
gi|421055500|ref|ZP_15518463.1| tRNA modification GTPase TrmE [Pelosinus fermentans B4]
gi|421060334|ref|ZP_15522829.1| tRNA modification GTPase mnmE [Pelosinus fermentans B3]
gi|421067274|ref|ZP_15528772.1| tRNA modification GTPase mnmE [Pelosinus fermentans A12]
gi|421072382|ref|ZP_15533493.1| tRNA modification GTPase mnmE [Pelosinus fermentans A11]
gi|392439883|gb|EIW17584.1| tRNA modification GTPase TrmE [Pelosinus fermentans B4]
gi|392446019|gb|EIW23321.1| tRNA modification GTPase mnmE [Pelosinus fermentans A11]
gi|392450042|gb|EIW27096.1| tRNA modification GTPase mnmE [Pelosinus fermentans A12]
gi|392453594|gb|EIW30466.1| tRNA modification GTPase mnmE [Pelosinus fermentans DSM 17108]
gi|392457359|gb|EIW34035.1| tRNA modification GTPase mnmE [Pelosinus fermentans B3]
Length = 461
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 183/475 (38%), Positives = 286/475 (60%), Gaps = 23/475 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI+ I T+ G GA+GI+R+SG + + I F+ + +G + + S V YG
Sbjct: 6 TISTIATAPG--EGAIGIIRMSGSLTIKIAETFFRGI-------NGKNAGQIASQQVAYG 56
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D +G V+DEVL + M P+SYTREDVVE+ CHG V ++++L L+ GA L++PG
Sbjct: 57 HIIDPDNGLVIDEVLLLVMHGPKSYTREDVVEIHCHGGPVPMKKILALTLQYGARLSEPG 116
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGRLDLSQAE V +I AK+ A+ A+ + G S + +R + + ++
Sbjct: 117 EFTKRAFLNGRLDLSQAEAVMDIIRAKTDASLRMAVGHLSGALSDQIRKMRYEILRMIAN 176
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
+EA +DF ++++ L V + + D+ + L T ++L+ GL+ I+G+PNVGK
Sbjct: 177 LEATIDFPEEDIEVLAAQDVRAAVVLLLADINHLLLTKETGRILREGLETVILGKPNVGK 236
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLNA K +RAIVT+I GTTRDVIE V + GVP+ ++DTAGIRET DI+E++GVE++
Sbjct: 237 SSLLNALLKEKRAIVTDIPGTTRDVIEEFVNLSGVPLKIVDTAGIRETSDIIEQMGVEKA 296
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
+ + AD+I++ + A ++ED E+L + S I+++NK D P+ N
Sbjct: 297 KEFVVTADLILLLLDASLPLSAEDREVLTML--------SGKQAIVLVNKTDL-PALLN- 346
Query: 452 WNKVGNSFND-HVFTCAVT-GQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
++V D V +V G G+ +LE I+ +V +I + N RQ L +
Sbjct: 347 LDEVYTYIADTKVLKISVMEGTGLAELEQMIVDMVYGGEITQKEGAFLTNLRQANLLEQA 406
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K L ++I+E +P D IDL+++ LG+I+G+ + E+++ IF +FCIGK
Sbjct: 407 KYHLEATIATIDEGMPSDCIVIDLKESWDKLGEITGDTVGEDIIDQIFTQFCIGK 461
>gi|417925182|ref|ZP_12568609.1| tRNA modification GTPase TrmE [Finegoldia magna
SY403409CC001050417]
gi|341592479|gb|EGS35365.1| tRNA modification GTPase TrmE [Finegoldia magna
SY403409CC001050417]
Length = 452
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 181/478 (37%), Positives = 278/478 (58%), Gaps = 38/478 (7%)
Query: 95 IAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGV 154
IAAI ++ G +GIVR++G VD++ VFK + + + + YG
Sbjct: 5 IAAISSATG--EAGIGIVRMTGEGCVDVLDSVFKRANE---------NADLINRKMTYGH 53
Query: 155 VLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEF 214
++D + +VDEVL M AP +YTREDVVE+ HG V +R+VL L GA LA+ GEF
Sbjct: 54 IVDDN-EIVDEVLVCYMKAPHTYTREDVVEIYTHGGVVAVRKVLEVLLNNGARLAEAGEF 112
Query: 215 TLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIE 274
T RAFLNGR+DLSQAE + +I AK+ A ++ ++G + + +R K +++L+ +E
Sbjct: 113 TKRAFLNGRIDLSQAEAIIDMIKAKTDKAYSVSMKQLEGSVNRNIKQLRDKLLDMLSHVE 172
Query: 275 ARLDFDDEM-------PPLNL-NLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
++F ++M P LN N V+DK+ +S E+AN ++++ G+ I+G+
Sbjct: 173 YSINFTEDMQDELDNTPVLNEGNEVLDKLKKLS-------ESANRGRIIRDGINTTIIGK 225
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLNA K RAIVT+I GTTRDVIE + + G+ + + DTAGIR+T+DIVEKI
Sbjct: 226 PNVGKSSLLNALLKENRAIVTDIPGTTRDVIEEYIDLDGISLKINDTAGIRDTEDIVEKI 285
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVE+S + +D+II + + ED ++L+ I+ +KKS I+++NKID
Sbjct: 286 GVEKSVSFISDSDLIIAIFDSSREFDDEDRKILDLIR-DKKS-------IVLLNKIDLDG 337
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ N G + T +GI+DLE I+++ I A N R + +
Sbjct: 338 GFDVDENLEGIEV---IHTSIKNNEGIEDLENKIIEMFNDGYIEANNDNIITNIRHRDII 394
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++L +E +P+D + +DLR+A LG+I+GE + ++VL+ IF FCIGK
Sbjct: 395 NKAIKSLESSLHDMEAGVPIDCFEVDLRNAWEILGEITGETVDDDVLNKIFSDFCIGK 452
>gi|449914764|ref|ZP_21795797.1| tRNA modification GTPase TrmE [Streptococcus mutans 15JP3]
gi|449157543|gb|EMB60981.1| tRNA modification GTPase TrmE [Streptococcus mutans 15JP3]
Length = 455
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 173/476 (36%), Positives = 272/476 (57%), Gaps = 29/476 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVR+SG A+ I+ ++FK G SH +
Sbjct: 6 FDTITAIATPLG--EGAIGIVRISGSKALAIIKKIFK----------GKNLDDVPSHTIN 53
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ +G ++DEV+ M AP+++TREDV+E+ HG +L+ L +GA +A P
Sbjct: 54 YGHIVE-NGAIIDEVMVSVMRAPKTFTREDVIEINTHGGVAVTNEILQLVLRSGARMADP 112
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A+ + G S+L+ + R + + L
Sbjct: 113 GEFTKRAFLNGRVDLAQAEAVMDLIRAKTDKAMAVAVQQLDGSLSNLINNTRQEILNTLA 172
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + L+ +K + N L+TA K+L+ GL AI+GRPNV
Sbjct: 173 QVEVNIDYPEYDDVEEMTTALMREKTQEFETLLTNLLKTACRGKILREGLSTAIIGRPNV 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGVE
Sbjct: 233 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVE 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL Q++ + ++++NK D
Sbjct: 293 RSKKALEEADLVLLVLNSAEKLTDQDRTLLEISQNSNR--------LILLNKTDLP---- 340
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLH-QIPAGGRRWAVNQRQCEQLMR 508
E + D + + Q I +E I K+ + I + N R + +
Sbjct: 341 -EQIETDQLPEDCIKISVIKNQNIDVIEERINKLFFDNAAIVEKDATYLSNTRHISLIEK 399
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 400 ALKSLQAVNDGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 455
>gi|289765520|ref|ZP_06524898.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. D11]
gi|289717075|gb|EFD81087.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. D11]
Length = 455
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 173/480 (36%), Positives = 282/480 (58%), Gaps = 34/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T G G + IVR+SG +++I+ ++F+P K KK S ++ +
Sbjct: 3 LDTIAAISTPRG--EGGISIVRMSGQDSLNILEKIFRP---KNKKVSELKNYS-----IN 52
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG ++D ++VDEVL M AP +YTRED+VE+ CHG + +VL L+ GA +A+
Sbjct: 53 YGHIIDNE-HIVDEVLVSIMKAPNTYTREDIVEINCHGGFLVTEKVLEVVLKNGARIAEI 111
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V +I K+ + +L ++G +T+++ ++L
Sbjct: 112 GEFTKRAFLNGRIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKITTIKKSVLDLAA 171
Query: 272 EIEARLDF-----DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
I LD+ DD +P NLV + + S ++++ + + + K+++ G++ AI+G+
Sbjct: 172 HINVVLDYPEEGIDDPVPE---NLV-ENLKKASAEIKDLVLSYDKGKIIKDGIKTAIIGK 227
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSS+LN+ + +RAIVT I GTTRD+IE + + G+P+ L+DTAGIR TDDI+E I
Sbjct: 228 PNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIIENI 287
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVE+S+ + AD+I+ + ED + + I ++K +I ++NKID
Sbjct: 288 GVEKSKELINSADLILYVIDISREIDEEDFRIYDIINTDK--------VIGILNKIDIKK 339
Query: 447 SAS-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCE 504
+++ K+ V A++ GI +LE I K + I ++ + N R
Sbjct: 340 DIDLSKFPKI----EKWVEISALSKIGIDNLENEIYKFIMNENIEDSSQKLVITNVRHKS 395
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L +T EAL+ + +I++ P+D +D++DA +L +++GE SE++L +IF FC+GK
Sbjct: 396 ALEKTNEALLNIIETIDKGFPMDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455
>gi|225028844|ref|ZP_03718036.1| hypothetical protein EUBHAL_03131 [Eubacterium hallii DSM 3353]
gi|224953840|gb|EEG35049.1| tRNA modification GTPase TrmE [Eubacterium hallii DSM 3353]
Length = 471
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 180/483 (37%), Positives = 275/483 (56%), Gaps = 32/483 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T++ +GI+R+SG A++I+ ++F+P KK + ++ +H +
Sbjct: 11 FDTIAAIATAVSN--AGIGIIRISGSEAMEILVKIFEPYNKK------ADVYQLENHRIY 62
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG + D VVDE + + M P SYT+EDVVE+ CHG + +VL L+ GA A+P
Sbjct: 63 YGNIKDGE-EVVDECIVLIMKGPHSYTKEDVVEIDCHGGVTVVYKVLNLVLKNGARAAEP 121
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DLSQAE V LI +K+ A ++ ++GG S + +R + I +
Sbjct: 122 GEFTKRAFLNGRIDLSQAEAVMDLIDSKNEMARKNSMTQLKGGLSDKIKQLREEIIYQIA 181
Query: 272 EIEARLDFDDEMPPLNLNLVMDKIHAMSQD------VENALETANYDKLLQSGLQIAIVG 325
IE+ LD P + +L + +D + L++ + +++ G++ IVG
Sbjct: 182 FIESALD-----DPEHYSLDGFPEKLLEEDKKWITIAKEMLDSYDNGRIIAEGIRTCIVG 236
Query: 326 RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEK 385
+PN GKSS LNA ERAIVT+IAGTTRD +E SVT+ G+ + ++DTAGIR+T+D VE
Sbjct: 237 KPNAGKSSFLNALLGEERAIVTDIAGTTRDTLEESVTIDGITLNIVDTAGIRDTEDKVES 296
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445
IGVER++ AD+I+ + + ED E+L RI+ KK I+++NK D A
Sbjct: 297 IGVERAKKEIESADLILFLMDTSVQISEEDIEILQRIRDKKK--------IILLNKSDKA 348
Query: 446 PSASN-EWNKVGNSFNDH---VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQR 501
S E + + ++ + A G GI + + ++ +I + N R
Sbjct: 349 TEESGFEQSALKEYISEETPVISISAKYGDGIDNFIMELKNMMFHGRIDVNQEVYITNAR 408
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
+ L +T E+L ++ SIE +P DF+TIDL +A LG I GE + E++++ IF KFC
Sbjct: 409 HKDALAKTYESLECVERSIEAGMPEDFFTIDLMNAYEKLGLIIGESVEEDLVNEIFSKFC 468
Query: 562 IGK 564
GK
Sbjct: 469 TGK 471
>gi|355629823|ref|ZP_09050594.1| tRNA modification GTPase TrmE [Clostridium sp. 7_3_54FAA]
gi|354818971|gb|EHF03429.1| tRNA modification GTPase TrmE [Clostridium sp. 7_3_54FAA]
Length = 459
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 176/480 (36%), Positives = 276/480 (57%), Gaps = 29/480 (6%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
T TIAAI T++ +GI+R+SG A DIV R+F+P K+KK ++ V
Sbjct: 3 TSDTIAAIATAL--TNSGIGIIRVSGNEAFDIVDRIFRPKNKRKKLK------EEKTYTV 54
Query: 151 EYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG + D ++DEVLA+ M P SYT ED VE+ CHG + ++++L ++ GA +A+
Sbjct: 55 HYGHIQD-GDEIIDEVLAIVMRGPHSYTAEDTVEIDCHGGVLVMKKILETVIKYGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I++K+ A ++++ + G S V +R K + +
Sbjct: 114 PGEFTKRAFLNGRIDLSQAEAVIDVINSKNNYALKSSVSQLSGSMSKKVKELREKLLFEI 173
Query: 271 TEIEARLDFDDEMP----PLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
IE+ LD + + P L + ++ M +++ A+ T + ++L G++ I+G+
Sbjct: 174 AFIESALDDPEHISLDGYPEKLKVT---VNDMQEELNRAISTFDSGRVLSEGIRTVILGK 230
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PN GKSSL+N ERAIVT+IAGTTRD +E ++ + G+ + ++DTAGIRET+D+VEKI
Sbjct: 231 PNAGKSSLMNVLVGEERAIVTDIAGTTRDTLEENIRLHGISLNIVDTAGIRETEDVVEKI 290
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GV+++ A A AD++I V D +++N I+ K I+++NK D
Sbjct: 291 GVDKARANADDADLLIYVVDGSCPLDENDYQIMNLIEGRKS--------IVLLNKTDLEM 342
Query: 447 SASNEW--NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCE 504
+ E K G V A +GI LE I ++ +I N R
Sbjct: 343 VLTPEEIKEKTGKEV---VAVSAKEQRGIDLLEEKIKELFLSGEINFNDEVMITNVRHKT 399
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++L +K SIE+++P DF++IDL +A LG I GE + +++++ IF KFC+GK
Sbjct: 400 AMSEALKSLSLVKQSIEDQMPEDFYSIDLMNAYEQLGTIIGESLEDDLVNEIFNKFCMGK 459
>gi|375311481|ref|ZP_09776736.1| tRNA modification GTPase trmE [Paenibacillus sp. Aloe-11]
gi|375076661|gb|EHS54914.1| tRNA modification GTPase trmE [Paenibacillus sp. Aloe-11]
Length = 458
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 184/481 (38%), Positives = 267/481 (55%), Gaps = 37/481 (7%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++G G + ++R+SGP AV V +F S + + SH V YG
Sbjct: 5 TIAAIATAVG--EGGIAVIRVSGPEAVTEVEALFH---------SKTPLSKAPSHTVHYG 53
Query: 154 VVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D H V+EVL M APRS+T EDVVE+ HG V ++RV+ L LA+PG
Sbjct: 54 HIIDPHNQEKVEEVLVTVMRAPRSFTTEDVVEISTHGGVVAVKRVMDLLLLQNIRLAEPG 113
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQAE V LI +KS A AL + G S + +R +E L
Sbjct: 114 EFTKRAFLNGRIDLSQAEGVIDLIRSKSDKAFSVALKQVDGQLSQNIRRLRNVLVETLAH 173
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IE +D+ + ++ L+ DK + +++ L TA K+L+ GL AIVGRPNVGK
Sbjct: 174 IEVNIDYPEHDVESFTSELIKDKSSQVMAEIDRLLHTAEQGKILREGLTTAIVGRPNVGK 233
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLN ++ ERAIVT+I GTTRDVIE VTV +P+ LLDTAGIRET D+VE+IGVERS
Sbjct: 234 SSLLNTLAQGERAIVTDIPGTTRDVIEEYVTVNNIPLKLLDTAGIRETMDVVERIGVERS 293
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN- 450
AD++++ ++A + ++ LL +I+ + I+++NK+D
Sbjct: 294 RTAVSEADLLLVVINANEPLHEDEMALLEQIRGRQA--------IVIMNKMDLPAQVDRD 345
Query: 451 -------EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQC 503
E V S +H +G LE AI + ++ + + N R
Sbjct: 346 LLLRYVPEELIVPMSVKEH--------EGADRLEQAISNLFFSGKLESADMTYVSNVRHI 397
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
L + +++LV + ++ +P+D ID+R A LG+I G+ + ++ IF +FC+G
Sbjct: 398 ALLKKARQSLVDAYEAADQFVPIDMIQIDVRLAWEHLGEIVGDTAHDALIDQIFSQFCLG 457
Query: 564 K 564
K
Sbjct: 458 K 458
>gi|423070593|ref|ZP_17059369.1| tRNA modification GTPase mnmE [Streptococcus intermedius F0413]
gi|424787489|ref|ZP_18214255.1| tRNA modification GTPase TrmE [Streptococcus intermedius BA1]
gi|355365679|gb|EHG13401.1| tRNA modification GTPase mnmE [Streptococcus intermedius F0413]
gi|422113784|gb|EKU17511.1| tRNA modification GTPase TrmE [Streptococcus intermedius BA1]
Length = 457
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 172/477 (36%), Positives = 273/477 (57%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTESFAIAQKIFK----------GKDLSTVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++DEV+ M +P+++TREDV+E+ HG +L+ + GA +A+
Sbjct: 54 YGHIVDPAKDEILDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEILQLVIREGARIAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE + +I AK+ A + A+ + G S L+ ++R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAIMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + + L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTKLLYEKTAEFEELLTQLLKTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIR+TDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q T IL++NK D
Sbjct: 294 ERSKKALKDADLVLLVLNANEPLTEQDHKLLEISQ--------DTNRILLLNKTDL---- 341
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
+E + +D + A+ Q I +E I ++ + I + N R +
Sbjct: 342 -DEKIETTQLPDDFIKISALQNQNIDKIEERINQLFFENAGIAEQDATYLSNSRHISLIE 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + ++ +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 401 KAIESLHAVNEGLDLGMPVDLVQVDLTQTWRILGEITGDAAPDELITQLFSQFCLGK 457
>gi|419493318|ref|ZP_14033044.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47210]
gi|421289642|ref|ZP_15740393.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA54354]
gi|421304960|ref|ZP_15755616.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA62331]
gi|379593493|gb|EHZ58305.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47210]
gi|395888883|gb|EJG99893.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA54354]
gi|395905622|gb|EJH16527.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA62331]
Length = 457
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 272/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIVAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D P A
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDL-PEA 344
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
+ D + + Q I +E I + GL + A + N R
Sbjct: 345 I----ETSELPEDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|418159686|ref|ZP_12796385.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17227]
gi|419520943|ref|ZP_14060539.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA05245]
gi|353821419|gb|EHE01595.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17227]
gi|379539957|gb|EHZ05134.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA05245]
Length = 457
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 274/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+IE +D+ D++ +V +K Q + L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQIEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ A+++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEANLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 346 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|319938848|ref|ZP_08013212.1| tRNA modification GTPase mnmE [Streptococcus anginosus 1_2_62CV]
gi|319811898|gb|EFW08164.1| tRNA modification GTPase mnmE [Streptococcus anginosus 1_2_62CV]
Length = 457
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 174/477 (36%), Positives = 273/477 (57%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSTVASHTLN 53
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N ++DEV+ M +P+++TREDV+E+ HG +L+ + GA +A+
Sbjct: 54 YGHIIDPEKNEILDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEILQLAIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE + +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAIMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + + L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTKLLREKTAEFEKLLTQLLKTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIR+TDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q T IL++NK D
Sbjct: 294 ERSKKALQDADLVLLVLNASEPLTEQDRKLLEISQ--------DTNRILLLNKTDLEEKI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
E +K+ + F + + Q I +E I ++ + I + N R +
Sbjct: 346 --EVDKLPDDF---IKISVLQNQNIDKIEERINQLFFENAGIIEQDATYLSNARHISLIE 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + ++ +P+D +DL LG+I+G+ +E++S +F +FC+GK
Sbjct: 401 KAVESLQAVNEGLDLGMPVDLVQVDLTRTWEILGEITGDAAPDELISQLFSQFCLGK 457
>gi|421211119|ref|ZP_15668102.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070035]
gi|421231787|ref|ZP_15688431.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2080076]
gi|395573077|gb|EJG33668.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2070035]
gi|395595816|gb|EJG56042.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2080076]
Length = 457
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 178/480 (37%), Positives = 275/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSQVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ ++R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ A+++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEANLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ D + + Q I +E I + GL + A + N R
Sbjct: 346 --ETSKLP---EDVIRISVLKNQNIDKIEERINNLFFENAGLIEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|334342404|ref|YP_004547384.1| tRNA modification GTPase TrmE [Desulfotomaculum ruminis DSM 2154]
gi|334093758|gb|AEG62098.1| tRNA modification GTPase TrmE [Desulfotomaculum ruminis DSM 2154]
Length = 461
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 182/476 (38%), Positives = 285/476 (59%), Gaps = 24/476 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWR-PTSHVVEY 152
TI AI T +G G++G++R+SGP A++ +VF+P K +W ++ + Y
Sbjct: 5 TIVAIATPLG--EGSIGVIRISGPGAIEAGRKVFRPKKNI--------NWHIKDNYRLVY 54
Query: 153 GVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
G +++ + ++DEVL M P S+T EDVVE+ CHG V LRRVL+ L GA LA+P
Sbjct: 55 GYIVNPQQEEIIDEVLLSVMRGPHSFTAEDVVEISCHGGIVPLRRVLQLLLRQGARLAEP 114
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEF+ RAFLNGRLDLSQAE++ +I AK+ A A A+A + G S+ + +++ K + LL
Sbjct: 115 GEFSKRAFLNGRLDLSQAESIIDIIRAKTDAGAQIAMAQLGGSLSNKIFTLQDKLLSLLA 174
Query: 272 EIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+IEA +DF ++++ NL + + ++ E L A K+ + GLQ IVG+PNVG
Sbjct: 175 QIEAVIDFPEEDIGEANLQEMSRNCSEIIKETEQLLANAQTGKIYREGLQTVIVGKPNVG 234
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNA + +RAIVTEI GTTRD+IE + + G+P+ ++DTAG+RET D+VE++GVE+
Sbjct: 235 KSSLLNALLREQRAIVTEIPGTTRDIIEEVINIRGIPIKIMDTAGLRETRDLVEQLGVEK 294
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S + AD+I+ + A G ++ED +L ++ K +IL+INKID A S
Sbjct: 295 SRELLNQADLILFVLDATTGLSAEDYRVLELVRDKK--------VILLINKIDVA-SIGF 345
Query: 451 EWNKVGNSF-NDHVFTCAVTGQ-GIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ + F + + + G++ LE IM ++ ++ + + + N R + L R
Sbjct: 346 DTEALKEFFPKSPILKISAKKEIGLETLEQVIMDLILEGKVTSTDQVFISNTRHKQALER 405
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + L ++ +P D +ID+R A LG+I+G + E+++ IF FCIGK
Sbjct: 406 SMDHLQEALQGMKALVPPDLISIDIRSAWEILGEITGNTVGEDLIDRIFSDFCIGK 461
>gi|422932965|ref|ZP_16965890.1| tRNA modification GTPase TrmE [Fusobacterium nucleatum subsp.
animalis ATCC 51191]
gi|339891887|gb|EGQ80806.1| tRNA modification GTPase TrmE [Fusobacterium nucleatum subsp.
animalis ATCC 51191]
Length = 455
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 172/480 (35%), Positives = 281/480 (58%), Gaps = 34/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T G G + IVR+SG +++I+ ++F+P K KK S ++ +
Sbjct: 3 LDTIAAISTPRG--EGGISIVRMSGQDSLNILEKIFRP---KNKKVSELKNYS-----IN 52
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG ++D ++VDEVL M AP +YTRED+VE+ CHG + +VL L+ GA +A+
Sbjct: 53 YGHIIDNE-HIVDEVLVSIMKAPNTYTREDIVEINCHGGFLVTEKVLEVVLKNGARIAEI 111
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V +I K+ + +L ++G + ++ ++L
Sbjct: 112 GEFTKRAFLNGRIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIAIIKKSVLDLAA 171
Query: 272 EIEARLDF-----DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
I LD+ DD +P NLV D + S ++++ + + + K+++ G++ AI+G+
Sbjct: 172 HINVVLDYPEEGIDDPVPE---NLV-DNLKKASAEIKDLVLSYDKGKIIKDGIKTAIIGK 227
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSS+LN+ + +RAIVT I GTTRD+IE + + G+P+ L+DTAGIR TDD++E I
Sbjct: 228 PNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDVIENI 287
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVE+S+ + AD+I+ + ED + + I ++K +I ++NKID
Sbjct: 288 GVEKSKELINSADLILYVIDTSREIDEEDFRIYDIINTDK--------VIGILNKIDIKK 339
Query: 447 SAS-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCE 504
++++K+ V A++ GI +LE I K + I ++ + N R
Sbjct: 340 DIDLSKFSKI----EKWVEISALSKIGIDNLENEIYKFIMNENIEDSSQKLVITNVRHKS 395
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L +T EAL+ + +I++ P+D +D++DA +L +++GE SE++L +IF FC+GK
Sbjct: 396 ALEKTNEALLNIIETIDKGFPMDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455
>gi|386730443|ref|YP_006196826.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Staphylococcus aureus subsp. aureus 71193]
gi|418980533|ref|ZP_13528312.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Staphylococcus aureus subsp. aureus DR10]
gi|379991703|gb|EIA13169.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Staphylococcus aureus subsp. aureus DR10]
gi|384231736|gb|AFH70983.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
[Staphylococcus aureus subsp. aureus 71193]
Length = 466
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 175/479 (36%), Positives = 272/479 (56%), Gaps = 28/479 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT-SHVV 150
TI +I T +G GA+GIVRLSGP AV+I +++K G SH +
Sbjct: 10 LDTITSISTPMG--EGAIGIVRLSGPQAVEIADKLYK----------GKHLLNDVPSHTI 57
Query: 151 EYGVVLDRHGNVVDEVLAVPML-APRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG ++D V E + V +L AP+++TRED++E+ CHG + + RVL + GA +A
Sbjct: 58 NYGHIIDPESKEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTYGARMA 117
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+
Sbjct: 118 EPGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEI 177
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ ++++ + Q++ L+T K+++ GL IVG+P
Sbjct: 178 LAQVEVNIDYPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKP 237
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 238 NVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIG 297
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD+I+ ++ + T ED L +++ +I+++NK+D +
Sbjct: 298 VERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKNE--------DVIVIVNKMDLEQN 349
Query: 448 ASNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+ N+V + D + T + +GI +LE I + ++ + N R
Sbjct: 350 I--DINEVKDMIGDTPLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISL 407
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + ++ + + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 408 LKQARQTIQDAIDAAESGVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 466
>gi|417849222|ref|ZP_12495147.1| tRNA modification GTPase TrmE [Streptococcus mitis SK1080]
gi|339456849|gb|EGP69431.1| tRNA modification GTPase TrmE [Streptococcus mitis SK1080]
Length = 457
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 178/480 (37%), Positives = 271/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSQVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++ + T++D +LL Q T I+++NK D
Sbjct: 294 ERSKKALKEADLVLLVLNVSEPLTAQDRQLLEISQ--------ETNRIILLNKTDLP--- 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E + D + + Q I +E I + GL + A + N R
Sbjct: 343 --EVIETSELPEDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|379022401|ref|YP_005299063.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus
aureus subsp. aureus M013]
gi|418949675|ref|ZP_13501912.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-160]
gi|359831710|gb|AEV79688.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus
aureus subsp. aureus M013]
gi|375378284|gb|EHS81690.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-160]
Length = 459
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 175/479 (36%), Positives = 273/479 (56%), Gaps = 28/479 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT-SHVV 150
TI +I T +G GA+GIVRLSGP AV+I +++K G SH +
Sbjct: 3 LDTITSISTPMG--EGAIGIVRLSGPQAVEIADKLYK----------GKHLLNDVPSHTI 50
Query: 151 EYGVVLDRHGNVVDEVLAVPML-APRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG ++D V E + V +L AP+++TRED++E+ CHG + + RVL + GA +A
Sbjct: 51 NYGHIIDPESKEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTYGARMA 110
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+
Sbjct: 111 EPGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEI 170
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ ++++ + Q++ + L+T K+++ GL IVG+P
Sbjct: 171 LAQVEVNIDYPEYDDVEDATTEFLLEQSKEIKQEINHLLDTGAQGKIMREGLSTVIVGKP 230
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 231 NVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIG 290
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD+I+ ++ + T ED L +++ +I+++NK+D +
Sbjct: 291 VERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKNE--------DVIVIVNKMDLEQN 342
Query: 448 ASNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+ N+V + D + T + +GI +LE I + ++ + N R
Sbjct: 343 I--DINEVKDMIGDTPLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISL 400
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + ++ + + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 401 LKQARQTIQDAIDAAESGVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459
>gi|357236768|ref|ZP_09124111.1| putative tRNA modification GTPase MnmE [Streptococcus criceti HS-6]
gi|356884750|gb|EHI74950.1| putative tRNA modification GTPase MnmE [Streptococcus criceti HS-6]
Length = 456
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 177/479 (36%), Positives = 274/479 (57%), Gaps = 35/479 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG AV I VFK G + SH +
Sbjct: 7 FDTIAAISTPLG--EGAIGIVRLSGSQAVTIAKSVFK----------GKDLEKVPSHTIN 54
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ + ++DEV+ M AP+++TREDVVE+ HG +L+ L +GA +A+P
Sbjct: 55 YGHIIE-NDEIIDEVMVSVMRAPKTFTREDVVEINTHGGVAVTNEILQLLLRSGARMAEP 113
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A + A++ + G +L+ + R + + L
Sbjct: 114 GEFTKRAFLNGRVDLTQAEAVMDLIRAKTDKAMNIAVSQLDGSLKNLINNTRQEILNTLA 173
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + L+ +K + L TA K+L+ G+ AI+GRPNV
Sbjct: 174 QVEVNIDYPEYDDVEEMTTALMREKTQEFEALLTRLLATAKRGKILREGISTAIIGRPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + ++AIVT++ GTTRDVIE V + GVP+ L+DTAGIR+TDDIVEKIGVE
Sbjct: 234 GKSSLLNNLLREDKAIVTDVEGTTRDVIEEYVNIKGVPLKLIDTAGIRKTDDIVEKIGVE 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ ++ + T +D LL+ + +K+ I++INK D
Sbjct: 294 RSKRALAEADLVLLVLNGSESLTDQDRALLDISKDSKR--------IILINKTDLPQKI- 344
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCEQ 505
E +++ +D + + Q I +E I + GL + A + N R
Sbjct: 345 -ELDQLP---DDVIQISVLKNQNIDLIEERINDLFFDNAGLVEKDA---TYLSNSRHISL 397
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ R +L + +E +P+D ID+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 IERALASLKDVNKGLEAGMPVDLLQIDMTRCWEILGEITGDAAPDELITQLFSQFCLGK 456
>gi|421491160|ref|ZP_15938527.1| tRNA modification GTPase TrmE [Streptococcus anginosus SK1138]
gi|400372157|gb|EJP25106.1| tRNA modification GTPase TrmE [Streptococcus anginosus SK1138]
Length = 457
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 173/477 (36%), Positives = 272/477 (57%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTNSFAIAQKIFK----------GKDLSTVASHTLN 53
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N ++DEV+ M +P+++TREDV+E+ HG +L+ + GA +A+
Sbjct: 54 YGHIIDPEKNEILDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEILQLAIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE + +I AK+ + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAIMDIIRAKTDKVMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + + L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTKLLREKTAEFEKLLTQLLKTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIR+TDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q T IL++NK D
Sbjct: 294 ERSKKALQDADLVLLVLNASEPLTEQDRKLLEISQ--------DTNRILLLNKTDLEEKI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
E N++ + F + + Q I +E I ++ + I + N R +
Sbjct: 346 --EVNQLPDDF---IKISVLQNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIE 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + ++ +P+D +DL LG+I+G+ +E++S +F +FC+GK
Sbjct: 401 KAVESLQSVNEGLDLGMPVDLVQVDLTRTWEILGEITGDAAPDELISQLFSQFCLGK 457
>gi|350565178|ref|ZP_08933966.1| tRNA modification GTPase TrmE [Peptoniphilus indolicus ATCC 29427]
gi|348664043|gb|EGY80568.1| tRNA modification GTPase TrmE [Peptoniphilus indolicus ATCC 29427]
Length = 458
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 181/474 (38%), Positives = 273/474 (57%), Gaps = 24/474 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+ G +GIVR+SG ++ I + F+P+ KK + S + + YG
Sbjct: 6 TIAAISTATG--QAGIGIVRMSGDESIRIADKFFRPISKKTIEDS-------KNRTMMYG 56
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ D +VDEVL M P SYTRED+VE+ CHG V +R++L L AGA LA GE
Sbjct: 57 HIYDSE-KLVDEVLVCKMQGPHSYTREDIVEIYCHGGIVSVRKILNLLLSAGARLADRGE 115
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGRLDLSQAE V +I++KS + D ++ ++G S + S++ K + + I
Sbjct: 116 FTKRAFLNGRLDLSQAEAVIDVINSKSEISYDMSIKQLEGNLSGAIRSMKEKIMRMTALI 175
Query: 274 EARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
A +DF +DE+ N + ++ + D++ L +N +L++ G+ I+G+PNVGKS
Sbjct: 176 VANIDFPEDEIDMANYRRLEEEAIDVIGDIDGLLANSNRGRLIRDGINTVILGKPNVGKS 235
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNA K ERAIVT+I GTTRD+I V + GV + + DTAGIRETDD VEKIGV+R++
Sbjct: 236 SLLNAMLKDERAIVTDIPGTTRDIITDYVNLEGVLLKITDTAGIRETDDAVEKIGVDRAK 295
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
+D+II S+D E+L ++ NKK I+++NKID S++
Sbjct: 296 QSIEESDLIITIFDLSRELESDDYEIL-KLVDNKKH-------IILLNKIDLDRKVSDKE 347
Query: 453 NK--VGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+ +G+ +V G + LE ++++ +I + N R E L K
Sbjct: 348 LREFLGDR---EAIEISVERDGAKVLEDKVVEMFFDGEIKETSDIYVNNVRHIESLKAAK 404
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+++ + ++ E+ +D +DL DA +L I+GE +E+VL +F +FCIGK
Sbjct: 405 KSMEDALTGVKNEVFMDLIEVDLEDAISSLSNITGETTTEDVLDVVFSEFCIGK 458
>gi|406838506|ref|ZP_11098100.1| tRNA modification GTPase TrmE [Lactobacillus vini DSM 20605]
Length = 463
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 182/485 (37%), Positives = 263/485 (54%), Gaps = 40/485 (8%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVRLSG AV I ++FK G + SH
Sbjct: 7 FDTIAAIST----PPGEGAISIVRLSGQAAVIIAQKIFK----------GKNLTKVPSHT 52
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D + +DEV+ M AP+++TRED+VE+ CHG V ++L+ L GA L
Sbjct: 53 INYGHIVDPENRQEIDEVMVSVMRAPKTFTREDIVEINCHGGIVATNQILQLVLSNGARL 112
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFL+GR+DLSQAE V LI AK+ + AL + G L+ R +
Sbjct: 113 AEPGEFTKRAFLHGRIDLSQAEAVMDLIRAKTDRSMKVALNQLDGNLGHLIKHFRQDILN 172
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L ++E +D+ D+ + L+ +K + + L TA K+L+ GL AIVGR
Sbjct: 173 VLAQVEVNIDYPEYDDAEVMTAKLLREKATDLRTRITQLLATAKQGKVLREGLSTAIVGR 232
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN E+AIVT++AGTTRDVIE V GVP+ L+DTAGIR+T+D VEKI
Sbjct: 233 PNVGKSSLLNHLLHEEKAIVTDVAGTTRDVIEEYANVNGVPLKLIDTAGIRQTEDKVEKI 292
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GV+RS+ AD++++ + T+ED +LL K+ ++++NK D
Sbjct: 293 GVQRSKKAIDQADLVMVILDGSQSLTTEDRQLLALTADKKR--------LIIVNKADLPQ 344
Query: 447 SASNEWNKVGNSFNDHVFTCA-------VTGQGIQDLETAIMKIVGLHQIPAGGRRWAVN 499
+ G + + V T + QG+ LETAI + + N
Sbjct: 345 KLT------GTALEELVGTSTTILQASVLKNQGLDQLETAIANLFFAGIENSQTTVLVTN 398
Query: 500 QRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGK 559
R L + K+AL + + +P+D DL LG+I+G+ +E+L +F +
Sbjct: 399 ARHIALLQQAKQALNDVLHGLAAGMPVDLVQTDLTTCWELLGEITGDSYQDELLDQLFSQ 458
Query: 560 FCIGK 564
FC+GK
Sbjct: 459 FCLGK 463
>gi|304385851|ref|ZP_07368195.1| tRNA modification GTPase TrmE [Pediococcus acidilactici DSM 20284]
gi|427441383|ref|ZP_18925256.1| tRNA modification GTPase TrmE [Pediococcus lolii NGRI 0510Q]
gi|304328355|gb|EFL95577.1| tRNA modification GTPase TrmE [Pediococcus acidilactici DSM 20284]
gi|425787067|dbj|GAC46044.1| tRNA modification GTPase TrmE [Pediococcus lolii NGRI 0510Q]
Length = 486
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 185/480 (38%), Positives = 269/480 (56%), Gaps = 30/480 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG + I+R+SG A+ + ++++ G + SH
Sbjct: 30 FDTIAAIST----PPGEGGISIIRISGVNALKVASQIYR----------GKDLAKVASHT 75
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG V+D +DEV+ M AP +YT+EDVVE+ CHG V R+L+ L A L
Sbjct: 76 INYGHVVDPATDEEIDEVMVSVMRAPHTYTKEDVVEINCHGGIVATNRILQLILGLDARL 135
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQAE V LI AK+ + AL + G S L+ ++R ++
Sbjct: 136 AKPGEFTERAFLNGRIDLSQAEAVMDLIRAKTDQSMKVALDQLDGNLSHLIKNLRQDILD 195
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L ++E +D+ D++ + L+ +K + V L TA K+L+ GL AI+G
Sbjct: 196 VLAQVEVNIDYPEYDDVETMTTRLLKEKAIEVKAKVNQLLATAKQGKVLRDGLATAIIGH 255
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSS+LN ++AIVT++AGTTRDVIE V V GVP+ L+DTAGI ET+D VEKI
Sbjct: 256 PNVGKSSILNHLLHEDKAIVTDVAGTTRDVIEEYVNVQGVPLKLVDTAGIHETEDKVEKI 315
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GV+RS AD++I+ + + ED +LL++ + ++ I+V+NK D
Sbjct: 316 GVDRSRKALQQADLVILVLDSSVPLRDEDRQLLDQTANMQR--------IVVLNKTDLPT 367
Query: 447 SAS-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCE 504
+ NE K S + + + AV G +DLE I K+ I V N R
Sbjct: 368 KINLNELQKYA-SEAEIIKSSAVAPLGTKDLEDRIAKLFFAGSIENSSNNVMVTNARHIG 426
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L +T AL + IE +P+D ID+ A LG+I+G+ +E+L +F +FC+GK
Sbjct: 427 LLQQTVTALDSVLDGIEAGMPVDLVQIDMTRAWDLLGEITGDSYQDELLDQLFSQFCLGK 486
>gi|116493570|ref|YP_805305.1| tRNA modification GTPase TrmE [Pediococcus pentosaceus ATCC 25745]
gi|122264966|sp|Q03D59.1|MNME_PEDPA RecName: Full=tRNA modification GTPase MnmE
gi|116103720|gb|ABJ68863.1| tRNA modification GTPase trmE [Pediococcus pentosaceus ATCC 25745]
Length = 464
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 182/481 (37%), Positives = 268/481 (55%), Gaps = 32/481 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG + I+R+SG A+ ++++ G + SH
Sbjct: 8 FDTIAAIST----PPGEGGISIIRISGVDALKTASQIYR----------GKDLNKVNSHT 53
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D +GN VDEV+ M AP +YT+ED+VE+ CHG V R+L+ L A L
Sbjct: 54 INYGHIIDPENGNEVDEVMVSVMRAPHTYTKEDIVEINCHGGIVATNRILQIILGLDARL 113
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQAE V LI AK+ + AL + G S L+T++R ++
Sbjct: 114 AKPGEFTERAFLNGRIDLSQAEAVMDLIRAKTDQSMKVALDQLDGNLSHLITNLRQNILD 173
Query: 269 LLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L ++E +D+ D++ + L+ +K + ++ L TA K+L+ GL AI+G
Sbjct: 174 VLAQVEVNIDYPEYDDVETMTARLLKEKAIEVKAKIQQLLSTAKQGKVLRDGLATAIIGH 233
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSS+LN ++AIVT++AGTTRDVIE V V GVP+ L+DTAGI ET+D VEKI
Sbjct: 234 PNVGKSSILNHLLHEDKAIVTDVAGTTRDVIEEYVNVQGVPLKLVDTAGIHETEDKVEKI 293
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GV+RS AD++I+ + + ED ELL ++ I+V+NK D
Sbjct: 294 GVDRSRKALSQADLVILVLDSSVPLRDEDRELLRETNHMQR--------IVVLNKSDLEV 345
Query: 447 SASNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQC 503
+ N++ +D + + AV+ G +DLE I + I V N R
Sbjct: 346 KIN--LNELQEYVDDKEIIKSSAVSPLGTKDLEDRIAAMFFAGSIENTSNNIMVTNARHI 403
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
L + AL + IE +P+D ID+ LG+I+G+ +E+L +F +FC+G
Sbjct: 404 GLLKQADTALDAVLEGIETGMPVDLVQIDMTRTWDLLGEITGDSYQDELLDQLFSQFCLG 463
Query: 564 K 564
K
Sbjct: 464 K 464
>gi|15900887|ref|NP_345491.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae TIGR4]
gi|111658245|ref|ZP_01408937.1| hypothetical protein SpneT_02000559 [Streptococcus pneumoniae
TIGR4]
gi|418130180|ref|ZP_12767064.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA07643]
gi|418187025|ref|ZP_12823553.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47360]
gi|418229763|ref|ZP_12856368.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae EU-NP01]
gi|419477679|ref|ZP_14017504.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA18068]
gi|421242962|ref|ZP_15699482.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2081074]
gi|421247280|ref|ZP_15703766.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2082170]
gi|421270376|ref|ZP_15721232.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SPAR48]
gi|21363022|sp|Q97R24.1|MNME_STRPN RecName: Full=tRNA modification GTPase MnmE
gi|14972489|gb|AAK75131.1| thiophene and furan oxidation protein ThdF [Streptococcus
pneumoniae TIGR4]
gi|353803472|gb|EHD83764.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA07643]
gi|353852255|gb|EHE32244.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47360]
gi|353888661|gb|EHE68434.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae EU-NP01]
gi|379567061|gb|EHZ32048.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA18068]
gi|395609155|gb|EJG69244.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2081074]
gi|395614101|gb|EJG74122.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2082170]
gi|395868171|gb|EJG79289.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SPAR48]
Length = 457
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 178/480 (37%), Positives = 271/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------ETNRIILLNKTDLP--- 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E + D + + Q I +E I + GL + A + N R
Sbjct: 343 --ETIETSELPEDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|379705057|ref|YP_005203516.1| tRNA modification GTPaseTrmE:Small GTP-bindingprotein domain
protein [Streptococcus infantarius subsp. infantarius
CJ18]
gi|374681756|gb|AEZ62045.1| tRNA modification GTPaseTrmE:Small GTP-bindingprotein domain
protein [Streptococcus infantarius subsp. infantarius
CJ18]
Length = 457
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 176/478 (36%), Positives = 271/478 (56%), Gaps = 31/478 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG A+ I +V++ G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDALAIAQKVYR----------GKDLSKVASHTIN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + ++DEV+ MLAP+++TRE+V+E+ HG +L+ L GA LA+
Sbjct: 54 YGHIVDPDNDEILDEVMVSVMLAPKTFTRENVIEINTHGGVAVTNEILQLLLRQGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSKLINDTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +EN L TA K+L+ GL AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTALIREKTQEFQTLLENLLATAKRGKILREGLSTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDVVEKIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ +++ + T +D LL + + + I+++NK D
Sbjct: 294 ERSKKALEEADLVLLVLNSSEPLTDQDRALLELSKDSNR--------IILLNKTDLPEKI 345
Query: 449 SNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQL 506
+ D V +V Q I +E I ++ + I + N R +
Sbjct: 346 E------ADELPDDVIRISVLKNQNIDLIEERINQLFFDNAGIVEKDATYLSNARHIGLI 399
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++L + ++ +P+D IDL LG+I+GE +E+++ +F +FC+GK
Sbjct: 400 EKAVQSLQSVNEGLKAGMPVDLLQIDLTRCWEILGEITGEAAPDELITKLFTQFCLGK 457
>gi|385262620|ref|ZP_10040724.1| tRNA modification GTPase TrmE [Streptococcus sp. SK643]
gi|385190521|gb|EIF37968.1| tRNA modification GTPase TrmE [Streptococcus sp. SK643]
Length = 457
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 176/481 (36%), Positives = 274/481 (56%), Gaps = 37/481 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLTKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G ++DEV+ M +P+++TRED++E+ HG +L+ + GA +A+
Sbjct: 54 YGHIVDPLTGKIMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDLVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPEAI 345
Query: 449 SNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQC 503
+ ++V +V Q I +E I + GL + A + N R
Sbjct: 346 ET------SELPENVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHI 396
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+G
Sbjct: 397 SLIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLG 456
Query: 564 K 564
K
Sbjct: 457 K 457
>gi|358466038|ref|ZP_09175906.1| hypothetical protein HMPREF9093_00367 [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357069454|gb|EHI79364.1| hypothetical protein HMPREF9093_00367 [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 455
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 173/480 (36%), Positives = 282/480 (58%), Gaps = 34/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T G G + IVR+SG +++I+ ++F+ K KK S ++ +
Sbjct: 3 LDTIAAISTPRG--EGGISIVRMSGQDSLNILEKIFRA---KNKKVSELKNYS-----IN 52
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG ++D ++VDEVL M AP +YTRED+VE+ CHG + +VL+ L+ GA +A+
Sbjct: 53 YGNIIDNE-HIVDEVLVSIMKAPNTYTREDIVEINCHGGFLVTEQVLQVVLKNGARIAEI 111
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V +I K+ + +L ++G + +++ ++L
Sbjct: 112 GEFTKRAFLNGRIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAA 171
Query: 272 EIEARLDF-----DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
I LD+ DD +P NLV D + S ++++ + + + K+++ G++ AI+G+
Sbjct: 172 HINVVLDYPEEGIDDPVPE---NLV-DNLKKASAEIKDLISSYDKGKIIKDGIKTAIIGK 227
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSS+LN+ + +RAIVT I GTTRD+IE + + G+P+ L+DTAGIR TDDIVE I
Sbjct: 228 PNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENI 287
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVE+S+ + AD+I+ + ED + + I ++K +I ++NKID
Sbjct: 288 GVEKSKELINSADLILYVIDTSREIDEEDFRIYDIINTDK--------VIGILNKIDIKK 339
Query: 447 SAS-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCE 504
+++ K+ N + A++ GI +LE I K + + ++ + N R
Sbjct: 340 EIDLSKFPKI----NKWIEISALSKIGIDNLEDEIYKYIMNENVEDSSQKLVITNVRHKS 395
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L +T EAL+ + +I+ LP+D +D++DA +L +++GE SE++L +IF FC+GK
Sbjct: 396 ALEKTNEALLNIIETIDMGLPMDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455
>gi|325978110|ref|YP_004287826.1| tRNA modification GTPase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|325178038|emb|CBZ48082.1| tRNA modification GTPase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
Length = 457
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 177/478 (37%), Positives = 273/478 (57%), Gaps = 31/478 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG A+ I +V++ G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTEALAIAQKVYR----------GKDLNKVASHTIN 53
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + + V+DEV+ MLAP+++T E+VVE+ HG +L+ L GA LA+
Sbjct: 54 YGHIVDPNTDEVLDEVMVSVMLAPKTFTCENVVEINTHGGVAVTNEILQLVLRQGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSQLINDTRQEILNTL 173
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + +EN L TA K+L+ GL AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTALIREKTQEFQELLENLLRTAKRGKILREGLSTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDVVEKIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ +++ + T++D LL + + + I+++NK D
Sbjct: 294 ERSKKALEEADLVLLVLNSSEPLTNQDRALLELSKDSNR--------IILLNKTDLPEKI 345
Query: 449 SNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQL 506
+ D V +V Q I +E I ++ + I + N R +
Sbjct: 346 E------ADQLPDDVIRISVLKNQNIDVIEERINQLFFDNAGIVEKDATYLSNARHISLI 399
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++L + +E +P+D IDL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 400 EKAVQSLQAVNEGLELGMPVDLLQIDLTRCWEILGEITGDAAPDELITKLFSQFCLGK 457
>gi|417848429|ref|ZP_12494374.1| tRNA modification GTPase TrmE [Streptococcus mitis SK1073]
gi|339452643|gb|EGP65266.1| tRNA modification GTPase TrmE [Streptococcus mitis SK1073]
Length = 457
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 178/481 (37%), Positives = 273/481 (56%), Gaps = 37/481 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTESFAIAQKIFK----------GKDLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPLTSKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------ETNRIILLNKTDLPEAI 345
Query: 449 SNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQC 503
+ ++V +V Q I +E +I + GL + A + N R
Sbjct: 346 ET------SELPENVIRISVLKNQNIDKIEESINNLFFENAGLVEQDA---TYLSNARHI 396
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
+ + E L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+G
Sbjct: 397 SLIEKAVENLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLG 456
Query: 564 K 564
K
Sbjct: 457 K 457
>gi|422339814|ref|ZP_16420771.1| tRNA modification GTPase TrmE [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|355370657|gb|EHG18037.1| tRNA modification GTPase TrmE [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 455
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 171/480 (35%), Positives = 281/480 (58%), Gaps = 34/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T G G + IVR+SG +++I+ ++F+P K KK S ++ +
Sbjct: 3 LDTIAAISTPRG--EGGISIVRMSGQDSLNILEKIFRP---KNKKVSELKNYS-----IN 52
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG ++D ++VDEVL M AP +YT+ED++E+ CHG + +VL L+ GA +A+
Sbjct: 53 YGHIIDNE-HIVDEVLVSIMKAPNTYTKEDIIEINCHGGYLVTEKVLEVVLKNGARIAEI 111
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V +I K+ + +L ++G + +++ ++L
Sbjct: 112 GEFTKRAFLNGRIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAA 171
Query: 272 EIEARLDF-----DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
I LD+ DD +P NLV D + S ++++ + + + K+++ G++ AI+G+
Sbjct: 172 HINVVLDYPEEGIDDPVPE---NLV-DNLKKASAEIKDLVSSYDKGKIIKDGIKTAIIGK 227
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSS+LN+ + +RAIVT I GTTRD+IE + + G+P+ L+DTAGIR TDDIVE I
Sbjct: 228 PNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENI 287
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVE+S+ + AD+I+ + ED + + I ++K +I ++NKID
Sbjct: 288 GVEKSKELINSADLILYVIDTSREIDEEDFRIYDIINTDK--------VIGILNKIDIKK 339
Query: 447 SAS-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCE 504
+++ K+ + A++ GI +LE I K + + ++ + N R
Sbjct: 340 DIDLSKFPKI----EKWIEISALSKIGIDNLENEIYKYIMNENVEDSSQKLVITNVRHKS 395
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L +T EAL+ + +I+ LP+D +D++DA +L +++GE SE++L +IF FC+GK
Sbjct: 396 ALEKTNEALLNIIETIDMGLPMDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455
>gi|82752290|ref|YP_418031.1| tRNA modification GTPase TrmE [Staphylococcus aureus RF122]
gi|123549492|sp|Q2YZB8.1|MNME_STAAB RecName: Full=tRNA modification GTPase MnmE
gi|82657821|emb|CAI82276.1| tRNA modification GTPase [Staphylococcus aureus RF122]
Length = 459
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 175/479 (36%), Positives = 272/479 (56%), Gaps = 28/479 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT-SHVV 150
TI +I T +G GA+GIVRLSGP AV+I +++K G SH +
Sbjct: 3 LDTITSISTPMG--EGAIGIVRLSGPQAVEIADKLYK----------GKHLLNDVPSHTI 50
Query: 151 EYGVVLDRHGNVVDEVLAVPML-APRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG ++D V E + V +L AP+++TRED++E+ CHG + + RVL + GA LA
Sbjct: 51 NYGHIIDPESKEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTYGARLA 110
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V + +K+ A+ A+ I+G S L+ R +E+
Sbjct: 111 EPGEFTKRAFLNGRIDLSQAEAVMDFVRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEI 170
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ ++++ + Q++ L+T K+++ GL IVG+P
Sbjct: 171 LAQVEVNIDYPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKP 230
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 231 NVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIG 290
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD+I+ ++ + T ED L +++ +I+++NK+D +
Sbjct: 291 VERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKNE--------DVIVIVNKMDLEQN 342
Query: 448 ASNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+ N+V + D + T + +GI +LE I + ++ + N R
Sbjct: 343 I--DINEVKDMIGDTPLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISL 400
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + ++ + + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 401 LKQARQTIQDAIDAAESGVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459
>gi|312864738|ref|ZP_07724969.1| tRNA modification GTPase TrmE [Streptococcus downei F0415]
gi|311099865|gb|EFQ58078.1| tRNA modification GTPase TrmE [Streptococcus downei F0415]
Length = 456
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 174/479 (36%), Positives = 273/479 (56%), Gaps = 35/479 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG AV I VFK G SH +
Sbjct: 7 FDTIAAISTPLG--EGAIGIVRLSGSQAVSIAKSVFK----------GKDLESVPSHTIN 54
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ ++DEV+ M +P+++TREDVVE+ HG +L+ L +GA +A+P
Sbjct: 55 YGHIME-DSEIIDEVMVSVMRSPKTFTREDVVEINTHGGLAVTNEILQLLLRSGARMAEP 113
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A + A++ + G +L+ + R + + L
Sbjct: 114 GEFTKRAFLNGRVDLTQAEAVMDLIRAKTDKAMNIAVSQLDGSLKNLINNTRQEILNTLA 173
Query: 272 EIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + L+ +K + + L TA K+L+ GL AI+GRPNV
Sbjct: 174 QVEVNIDYPEYDDVEEMTTALMCEKTQEFEELLTRLLATAKRGKILREGLSTAIIGRPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + ++AIVT++AGTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGVE
Sbjct: 234 GKSSLLNNLLREDKAIVTDVAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVE 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS AD++++ ++ + + +D +LL+ + K+ I++INK D
Sbjct: 294 RSRKALAEADLVLLVLNGSENLSQQDRDLLDISKEAKR--------IILINKTDLPQKI- 344
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCEQ 505
E +++ D + + Q ++ +E I + GL + A + N R
Sbjct: 345 -ELDQLP---TDAIPISVLNNQNMEAIEERINDLFFDNAGLVEKDA---TYLSNSRHISL 397
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + +L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 IEKALASLQEVNQGLEAGMPVDLLQVDMTRCWEILGEITGDAAPDELITQLFSQFCLGK 456
>gi|148998838|ref|ZP_01826274.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP11-BS70]
gi|168576255|ref|ZP_02722149.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae MLV-016]
gi|307067807|ref|YP_003876773.1| putative GTPase [Streptococcus pneumoniae AP200]
gi|418148440|ref|ZP_12785205.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13856]
gi|419470967|ref|ZP_14010826.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA07914]
gi|419503825|ref|ZP_14043494.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47760]
gi|421244834|ref|ZP_15701335.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2081685]
gi|421314187|ref|ZP_15764777.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47562]
gi|147755265|gb|EDK62316.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP11-BS70]
gi|183577997|gb|EDT98525.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae MLV-016]
gi|306409344|gb|ADM84771.1| Predicted GTPase [Streptococcus pneumoniae AP200]
gi|353813115|gb|EHD93348.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA13856]
gi|379545683|gb|EHZ10822.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA07914]
gi|379606502|gb|EHZ71249.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47760]
gi|395609334|gb|EJG69421.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2081685]
gi|395914687|gb|EJH25531.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47562]
Length = 457
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 178/480 (37%), Positives = 273/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ + + Q I +E I + GL + A + N R
Sbjct: 346 --ETSKLPEEV---IRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|340398807|ref|YP_004727832.1| tRNA modification GTPase trmE [Streptococcus salivarius CCHSS3]
gi|338742800|emb|CCB93308.1| tRNA modification GTPase trmE [Streptococcus salivarius CCHSS3]
Length = 456
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 178/479 (37%), Positives = 269/479 (56%), Gaps = 35/479 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG AV I +VFK G SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTDAVAIANKVFK----------GKNLETVASHTIN 54
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ + +DEV+ M AP+++TREDVVE+ HG +L+ + +GA +A+P
Sbjct: 55 YGHIVE-NDETIDEVMVSVMCAPKTFTREDVVEINTHGGVAVTNEILQLLIRSGARMAEP 113
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEF+ RAFLNGR+DL+QAE V LI AK+ A A++ + G L+ + R + + L
Sbjct: 114 GEFSKRAFLNGRVDLTQAEAVMDLIRAKTDKAMAVAVSQLDGSLKDLINNTRQEILNTLA 173
Query: 272 EIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + NLV +K +EN L TA K+L+ GL AI+GRPNV
Sbjct: 174 QVEVNIDYPEYDDVEEVTTNLVREKTQEFQALLENLLATAKRGKILREGLSTAIIGRPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIR+TDD+VEKIGVE
Sbjct: 234 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVE 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ ++ + T +D LL I N I+++NK D +
Sbjct: 294 RSKKALEEADLVLLVLNNSEPLTEQDRTLL-EISKNSNR-------IILLNKTDLPQAIQ 345
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCEQ 505
E D + + + I +E I ++ GL + A + N R
Sbjct: 346 MEELP-----EDVIPISVLNNENIDKIEDRINQLFFDNAGLVEKDA---TYLSNARHISL 397
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 IEKALESLEAVNQGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 456
>gi|337281892|ref|YP_004621363.1| thiophene and furan oxidation protein ThdF [Streptococcus
parasanguinis ATCC 15912]
gi|335369485|gb|AEH55435.1| thiophene and furan oxidation protein ThdF [Streptococcus
parasanguinis ATCC 15912]
Length = 466
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 174/480 (36%), Positives = 272/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G SH +
Sbjct: 15 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLTSVASHTLN 62
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N ++DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 63 YGHIVDPDKNEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQLVIREGARLAE 122
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 123 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 182
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ ++ +K + N L+TA K+L+ G+ AI+GRPN
Sbjct: 183 AQVEVNIDYPEYDDVEEATTEIIREKTSEFEALLTNLLKTARRGKILREGISTAIIGRPN 242
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 243 VGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAGIRETEDIVEQIGV 302
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q + + I+++NK+D
Sbjct: 303 ERSKKALKEADLVLLVLNASEPLTDQDRQLLEISQDSNR--------IILLNKVDLP--- 351
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E ++ DH+ + Q I +E I + GL + A + N R
Sbjct: 352 --EKIEIDQLPEDHIKISVLKNQNIDQIEDRINALFFENAGLVEQDA---TYLSNARHIS 406
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + + +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 407 LIEKAVESLQAVNEGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 466
>gi|258423240|ref|ZP_05686132.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9635]
gi|257846569|gb|EEV70591.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9635]
Length = 459
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 175/479 (36%), Positives = 272/479 (56%), Gaps = 28/479 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT-SHVV 150
TI +I T +G GA+GIVRLSGP AV+I +++K G SH +
Sbjct: 3 LDTITSISTPMG--EGAIGIVRLSGPQAVEIADKLYK----------GKHLLNDVPSHTI 50
Query: 151 EYGVVLDRHGNVVDEVLAVPML-APRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG ++D V E + V +L AP+++TRED++E+ CHG + + RVL + GA +A
Sbjct: 51 NYGHIIDPESKEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTYGARMA 110
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+
Sbjct: 111 EPGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEI 170
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ ++++ + Q++ L+T K+++ GL IVG+P
Sbjct: 171 LAQVEVNIDYPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKP 230
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 231 NVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIG 290
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD+I+ ++ + T ED L +++ +I+++NK+D +
Sbjct: 291 VERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKNE--------DVIVIVNKMDLEQN 342
Query: 448 ASNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+ N+V + D + T + +GI +LE I + ++ + N R
Sbjct: 343 I--DINEVKDMIGDTPLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISL 400
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + ++ + + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 401 LKQARQTIQDAIDAAESGVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459
>gi|449888432|ref|ZP_21787282.1| tRNA modification GTPase TrmE [Streptococcus mutans SA41]
gi|449919409|ref|ZP_21797930.1| tRNA modification GTPase TrmE [Streptococcus mutans 1SM1]
gi|449970178|ref|ZP_21813667.1| tRNA modification GTPase TrmE [Streptococcus mutans 2VS1]
gi|450039966|ref|ZP_21836507.1| tRNA modification GTPase TrmE [Streptococcus mutans T4]
gi|450050953|ref|ZP_21840553.1| tRNA modification GTPase TrmE [Streptococcus mutans NFSM1]
gi|450057159|ref|ZP_21842408.1| tRNA modification GTPase TrmE [Streptococcus mutans NLML4]
gi|450105968|ref|ZP_21860199.1| tRNA modification GTPase TrmE [Streptococcus mutans SF14]
gi|450165180|ref|ZP_21881723.1| tRNA modification GTPase TrmE [Streptococcus mutans B]
gi|450182262|ref|ZP_21888247.1| tRNA modification GTPase TrmE [Streptococcus mutans 24]
gi|449159524|gb|EMB62858.1| tRNA modification GTPase TrmE [Streptococcus mutans 1SM1]
gi|449173587|gb|EMB76150.1| tRNA modification GTPase TrmE [Streptococcus mutans 2VS1]
gi|449199642|gb|EMC00699.1| tRNA modification GTPase TrmE [Streptococcus mutans T4]
gi|449202255|gb|EMC03189.1| tRNA modification GTPase TrmE [Streptococcus mutans NFSM1]
gi|449205688|gb|EMC06423.1| tRNA modification GTPase TrmE [Streptococcus mutans NLML4]
gi|449223667|gb|EMC23339.1| tRNA modification GTPase TrmE [Streptococcus mutans SF14]
gi|449240886|gb|EMC39540.1| tRNA modification GTPase TrmE [Streptococcus mutans B]
gi|449244949|gb|EMC43303.1| tRNA modification GTPase TrmE [Streptococcus mutans 24]
gi|449251373|gb|EMC49387.1| tRNA modification GTPase TrmE [Streptococcus mutans SA41]
Length = 455
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 172/476 (36%), Positives = 272/476 (57%), Gaps = 29/476 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVR+SG A+ I+ ++FK G SH +
Sbjct: 6 FDTITAIATPLG--EGAIGIVRISGSKALAIIKKIFK----------GKNLDDVPSHTIN 53
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ +G ++DEV+ M AP+++TREDV+E+ HG +L+ L +GA +A P
Sbjct: 54 YGHIVE-NGAIIDEVMVSVMRAPKTFTREDVIEINTHGGVAVTNEILQLVLRSGARMADP 112
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A+ + G S+L+ + R + + L
Sbjct: 113 GEFTKRAFLNGRVDLAQAEAVMDLIRAKTDKAMAVAVQQLDGSLSNLINNTRQEILNTLA 172
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + L+ +K + N L+TA K+L+ GL AI+GRPNV
Sbjct: 173 QVEVNIDYPEYDDVEEMTTALMREKTQEFETLLTNLLKTARRGKILREGLSTAIIGRPNV 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGVE
Sbjct: 233 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVE 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL Q++ + ++++NK D
Sbjct: 293 RSKKALEEADLVLLVLNSAEKLTDQDRTLLEISQNSNR--------LILLNKTDLP---- 340
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLH-QIPAGGRRWAVNQRQCEQLMR 508
E + + + + Q I +E I K+ + I + N R + +
Sbjct: 341 -EQIETDQLPENCIKISVIKNQNIDVIEERINKLFFDNAAIVEKDATYLSNARHISLIEK 399
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 400 ALKSLQAVNDGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 455
>gi|418653180|ref|ZP_13215125.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-99]
gi|375019485|gb|EHS13038.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-99]
Length = 459
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 175/479 (36%), Positives = 272/479 (56%), Gaps = 28/479 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT-SHVV 150
TI +I T +G GA+GIVRLSGP AV+I +++K G SH +
Sbjct: 3 LDTITSISTPMG--EGAIGIVRLSGPQAVEIADKLYK----------GKHLLNDVPSHTI 50
Query: 151 EYGVVLDRHGNVVDEVLAVPML-APRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG ++D V E + V +L AP+++TRED++E+ CHG + + RVL + GA +A
Sbjct: 51 NYGHIIDPESKEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTYGARMA 110
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+
Sbjct: 111 EPGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQYILEI 170
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ ++++ + Q++ L+T K+++ GL IVG+P
Sbjct: 171 LAQVEVNIDYPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKP 230
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 231 NVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIG 290
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD+I+ ++ + T ED L +++ +I+++NK+D +
Sbjct: 291 VERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKNE--------DVIVIVNKMDLEQN 342
Query: 448 ASNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+ N+V + D + T + +GI +LE I + ++ + N R
Sbjct: 343 I--DINEVKDMIGDTPLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISL 400
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + ++ + + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 401 LKQARQTIQDAIDAAESGVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459
>gi|15928297|ref|NP_375830.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
N315]
gi|21284359|ref|NP_647447.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
MW2]
gi|49484907|ref|YP_042131.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
MRSA252]
gi|88196667|ref|YP_501498.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|148269143|ref|YP_001248086.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
JH9]
gi|150395225|ref|YP_001317900.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
JH1]
gi|221141513|ref|ZP_03566006.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
str. JKD6009]
gi|253316838|ref|ZP_04840051.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
str. CF-Marseille]
gi|253730397|ref|ZP_04864562.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253733841|ref|ZP_04868006.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
TCH130]
gi|257424194|ref|ZP_05600623.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
55/2053]
gi|257426871|ref|ZP_05603273.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus
65-1322]
gi|257429507|ref|ZP_05605894.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus
68-397]
gi|257432154|ref|ZP_05608517.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus
E1410]
gi|257435115|ref|ZP_05611166.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
M876]
gi|257793536|ref|ZP_05642515.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9781]
gi|258411158|ref|ZP_05681437.1| tRNA modification GTPase trmE [Staphylococcus aureus A9763]
gi|258420938|ref|ZP_05683872.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9719]
gi|258438577|ref|ZP_05689800.1| tRNA modification GTPase trmE [Staphylococcus aureus A9299]
gi|258443967|ref|ZP_05692305.1| tRNA modification GTPase mnmE [Staphylococcus aureus A8115]
gi|258446217|ref|ZP_05694377.1| tRNA modification GTPase mnmE [Staphylococcus aureus A6300]
gi|258449124|ref|ZP_05697230.1| tRNA modification GTPase trmE [Staphylococcus aureus A6224]
gi|258454398|ref|ZP_05702366.1| tRNA modification GTPase TrmE [Staphylococcus aureus A5937]
gi|269204349|ref|YP_003283618.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
ED98]
gi|282894277|ref|ZP_06302507.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8117]
gi|282907045|ref|ZP_06314893.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282910024|ref|ZP_06317832.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282912272|ref|ZP_06320068.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282912912|ref|ZP_06320704.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
M899]
gi|282918066|ref|ZP_06325816.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
D139]
gi|282921288|ref|ZP_06329006.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
C427]
gi|282922540|ref|ZP_06330230.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
C101]
gi|282927748|ref|ZP_06335362.1| tRNA modification GTPase TrmE [Staphylococcus aureus A10102]
gi|283767788|ref|ZP_06340703.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus
H19]
gi|283959482|ref|ZP_06376923.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
A017934/97]
gi|293497965|ref|ZP_06665819.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
58-424]
gi|293511555|ref|ZP_06670249.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
M809]
gi|293550164|ref|ZP_06672836.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
M1015]
gi|295406862|ref|ZP_06816666.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8819]
gi|295429295|ref|ZP_06821917.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|296275689|ref|ZP_06858196.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
MR1]
gi|297209454|ref|ZP_06925852.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|297245897|ref|ZP_06929759.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8796]
gi|297589203|ref|ZP_06947844.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
MN8]
gi|300911478|ref|ZP_07128927.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
TCH70]
gi|304379946|ref|ZP_07362675.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|379015831|ref|YP_005292067.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
VC40]
gi|384551476|ref|YP_005740728.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
JKD6159]
gi|384863360|ref|YP_005746080.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|384865883|ref|YP_005751242.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|384866356|ref|YP_005746552.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
TCH60]
gi|384871297|ref|YP_005754011.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus
T0131]
gi|385782929|ref|YP_005759100.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
11819-97]
gi|387144414|ref|YP_005732808.1| tRNA modification GTPase [Staphylococcus aureus subsp. aureus TW20]
gi|387151836|ref|YP_005743400.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus
aureus 04-02981]
gi|387603988|ref|YP_005735509.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
ST398]
gi|404480035|ref|YP_006711465.1| tRNA modification GTPase [Staphylococcus aureus 08BA02176]
gi|415683071|ref|ZP_11448337.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CGS00]
gi|415693115|ref|ZP_11454969.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CGS03]
gi|416840832|ref|ZP_11904006.1| tRNA modification GTPase TrmE [Staphylococcus aureus O11]
gi|416845651|ref|ZP_11906106.1| tRNA modification GTPase TrmE [Staphylococcus aureus O46]
gi|417648026|ref|ZP_12297856.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21189]
gi|417651829|ref|ZP_12301585.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21172]
gi|417653827|ref|ZP_12303555.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21193]
gi|417796913|ref|ZP_12444115.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21305]
gi|417801497|ref|ZP_12448585.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21318]
gi|417888889|ref|ZP_12532989.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21195]
gi|417891094|ref|ZP_12535161.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21200]
gi|417894152|ref|ZP_12538175.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21201]
gi|417897254|ref|ZP_12541191.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21235]
gi|417899907|ref|ZP_12543807.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21259]
gi|417900778|ref|ZP_12544657.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21266]
gi|418281327|ref|ZP_12894140.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21178]
gi|418281871|ref|ZP_12894669.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21202]
gi|418309609|ref|ZP_12921161.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21331]
gi|418312334|ref|ZP_12923844.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21334]
gi|418314856|ref|ZP_12926322.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21340]
gi|418425897|ref|ZP_12998974.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus
VRS1]
gi|418428774|ref|ZP_13001754.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus
VRS2]
gi|418431662|ref|ZP_13004552.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus
VRS3a]
gi|418435574|ref|ZP_13007414.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus
VRS4]
gi|418438329|ref|ZP_13010100.1| trmE- tRNA modification GTPase [Staphylococcus aureus subsp. aureus
VRS5]
gi|418441278|ref|ZP_13012951.1| trmE- tRNA modification GTPase [Staphylococcus aureus subsp. aureus
VRS6]
gi|418441559|ref|ZP_13013186.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus
VRS7]
gi|418447225|ref|ZP_13018682.1| trmE- tRNA modification GTPase [Staphylococcus aureus subsp. aureus
VRS8]
gi|418450323|ref|ZP_13021691.1| trmE- tRNA modification GTPase [Staphylococcus aureus subsp. aureus
VRS9]
gi|418453171|ref|ZP_13024486.1| trmE- tRNA modification GTPase [Staphylococcus aureus subsp. aureus
VRS10]
gi|418456108|ref|ZP_13027354.1| trmE- tRNA modification GTPase [Staphylococcus aureus subsp. aureus
VRS11a]
gi|418458984|ref|ZP_13030169.1| trmE- tRNA modification GTPase [Staphylococcus aureus subsp. aureus
VRS11b]
gi|418561802|ref|ZP_13126280.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21262]
gi|418565275|ref|ZP_13129685.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21264]
gi|418567624|ref|ZP_13131988.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21272]
gi|418573962|ref|ZP_13138142.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21333]
gi|418580675|ref|ZP_13144761.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418596807|ref|ZP_13160355.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21342]
gi|418598715|ref|ZP_13162224.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21343]
gi|418601041|ref|ZP_13164487.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21345]
gi|418640101|ref|ZP_13202337.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-3]
gi|418661985|ref|ZP_13223545.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-122]
gi|418872274|ref|ZP_13426618.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-125]
gi|418876913|ref|ZP_13431155.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418879705|ref|ZP_13433928.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418882666|ref|ZP_13436870.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418885313|ref|ZP_13439469.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1150]
gi|418887931|ref|ZP_13442070.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1524]
gi|418890515|ref|ZP_13444640.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1176]
gi|418893484|ref|ZP_13447589.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418896373|ref|ZP_13450450.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|418899307|ref|ZP_13453371.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418905559|ref|ZP_13459586.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418907682|ref|ZP_13461700.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG149]
gi|418913286|ref|ZP_13467260.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418915839|ref|ZP_13469804.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1267]
gi|418918772|ref|ZP_13472721.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIGC348]
gi|418921583|ref|ZP_13475507.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418930149|ref|ZP_13484001.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1750]
gi|418933008|ref|ZP_13486834.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418947124|ref|ZP_13499512.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-157]
gi|418953130|ref|ZP_13505136.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-189]
gi|418981967|ref|ZP_13529677.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418984490|ref|ZP_13532185.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1500]
gi|418986983|ref|ZP_13534659.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1835]
gi|418989915|ref|ZP_13537579.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1096]
gi|419783684|ref|ZP_14309467.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-M]
gi|424786723|ref|ZP_18213507.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus
aureus CN79]
gi|440736065|ref|ZP_20915666.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
DSM 20231]
gi|443636310|ref|ZP_21120425.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21236]
gi|448740846|ref|ZP_21722820.1| tRNA modification GTPase TrmE [Staphylococcus aureus KT/314250]
gi|448744193|ref|ZP_21726093.1| tRNA modification GTPase TrmE [Staphylococcus aureus KT/Y21]
gi|54039754|sp|P66973.1|MNME_STAAW RecName: Full=tRNA modification GTPase MnmE
gi|54042258|sp|P66972.1|MNME_STAAN RecName: Full=tRNA modification GTPase MnmE
gi|73919889|sp|Q6GD92.1|MNME_STAAR RecName: Full=tRNA modification GTPase MnmE
gi|122538496|sp|Q2FUQ2.1|MNME_STAA8 RecName: Full=tRNA modification GTPase MnmE
gi|189036211|sp|A6U595.1|MNME_STAA2 RecName: Full=tRNA modification GTPase MnmE
gi|189036212|sp|A5IWD7.1|MNME_STAA9 RecName: Full=tRNA modification GTPase MnmE
gi|13702669|dbj|BAB43809.1| possible thiophene and furan oxidation protein [Staphylococcus
aureus subsp. aureus N315]
gi|21205803|dbj|BAB96495.1| possible thiophene and furan oxidation protein [Staphylococcus
aureus subsp. aureus MW2]
gi|49243036|emb|CAG41770.1| probable tRNA modification GTPase [Staphylococcus aureus subsp.
aureus MRSA252]
gi|87204225|gb|ABD32035.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147742212|gb|ABQ50510.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus
JH9]
gi|149947677|gb|ABR53613.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
JH1]
gi|253725877|gb|EES94606.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253728144|gb|EES96873.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
TCH130]
gi|257273212|gb|EEV05314.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
55/2053]
gi|257276502|gb|EEV07953.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus
65-1322]
gi|257279988|gb|EEV10575.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus
68-397]
gi|257283033|gb|EEV13165.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus
E1410]
gi|257285711|gb|EEV15827.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
M876]
gi|257787508|gb|EEV25848.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9781]
gi|257840043|gb|EEV64508.1| tRNA modification GTPase trmE [Staphylococcus aureus A9763]
gi|257843128|gb|EEV67543.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9719]
gi|257848136|gb|EEV72128.1| tRNA modification GTPase trmE [Staphylococcus aureus A9299]
gi|257850851|gb|EEV74795.1| tRNA modification GTPase mnmE [Staphylococcus aureus A8115]
gi|257855043|gb|EEV77986.1| tRNA modification GTPase mnmE [Staphylococcus aureus A6300]
gi|257857557|gb|EEV80452.1| tRNA modification GTPase trmE [Staphylococcus aureus A6224]
gi|257863492|gb|EEV86252.1| tRNA modification GTPase TrmE [Staphylococcus aureus A5937]
gi|262076639|gb|ACY12612.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
ED98]
gi|269942298|emb|CBI50713.1| probable tRNA modification GTPase [Staphylococcus aureus subsp.
aureus TW20]
gi|282314761|gb|EFB45147.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
C101]
gi|282315703|gb|EFB46087.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
C427]
gi|282318351|gb|EFB48711.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
D139]
gi|282323012|gb|EFB53331.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
M899]
gi|282323968|gb|EFB54284.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282326090|gb|EFB56395.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282329944|gb|EFB59465.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282590508|gb|EFB95586.1| tRNA modification GTPase TrmE [Staphylococcus aureus A10102]
gi|282763322|gb|EFC03452.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8117]
gi|283461667|gb|EFC08751.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus
H19]
gi|283471926|emb|CAQ51137.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
ST398]
gi|283789074|gb|EFC27901.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
A017934/97]
gi|285818375|gb|ADC38862.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus
aureus 04-02981]
gi|290919211|gb|EFD96287.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
M1015]
gi|291096896|gb|EFE27154.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
58-424]
gi|291465513|gb|EFF08045.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
M809]
gi|294968327|gb|EFG44352.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8819]
gi|295127054|gb|EFG56698.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|296885915|gb|EFH24850.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|297177262|gb|EFH36515.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8796]
gi|297577714|gb|EFH96427.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
MN8]
gi|300887657|gb|EFK82853.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
TCH70]
gi|302334326|gb|ADL24519.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302752589|gb|ADL66766.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|304341526|gb|EFM07436.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|312436861|gb|ADQ75932.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
TCH60]
gi|312831050|emb|CBX35892.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315129541|gb|EFT85533.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CGS03]
gi|315195224|gb|EFU25612.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CGS00]
gi|323439701|gb|EGA97419.1| tRNA modification GTPase TrmE [Staphylococcus aureus O11]
gi|323443274|gb|EGB00891.1| tRNA modification GTPase TrmE [Staphylococcus aureus O46]
gi|329315432|gb|AEB89845.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus
T0131]
gi|329725659|gb|EGG62138.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21172]
gi|329731690|gb|EGG68050.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21189]
gi|329732386|gb|EGG68736.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21193]
gi|334267951|gb|EGL86402.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21305]
gi|334276541|gb|EGL94795.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21318]
gi|341839754|gb|EGS81308.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21235]
gi|341843970|gb|EGS85190.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21259]
gi|341847092|gb|EGS88278.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21266]
gi|341852961|gb|EGS93844.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21200]
gi|341853659|gb|EGS94540.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21201]
gi|341853821|gb|EGS94700.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21195]
gi|364523918|gb|AEW66668.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
11819-97]
gi|365165428|gb|EHM57215.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21178]
gi|365172159|gb|EHM62889.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21202]
gi|365238415|gb|EHM79251.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21331]
gi|365238682|gb|EHM79514.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21334]
gi|365244459|gb|EHM85118.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21340]
gi|371974430|gb|EHO91762.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21264]
gi|371975296|gb|EHO92591.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21262]
gi|371980663|gb|EHO97865.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21333]
gi|371982269|gb|EHO99429.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21272]
gi|374364528|gb|AEZ38633.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
VC40]
gi|374396608|gb|EHQ67839.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21342]
gi|374399492|gb|EHQ70633.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21343]
gi|374400032|gb|EHQ71155.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21345]
gi|375015501|gb|EHS09156.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-3]
gi|375037474|gb|EHS30508.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-122]
gi|375367328|gb|EHS71291.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-125]
gi|375375647|gb|EHS79217.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-189]
gi|375376809|gb|EHS80323.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-157]
gi|377699230|gb|EHT23577.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377701331|gb|EHT25664.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377705399|gb|EHT29704.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377708092|gb|EHT32384.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377710089|gb|EHT34341.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377713867|gb|EHT38075.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377718575|gb|EHT42747.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377719149|gb|EHT43320.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377720995|gb|EHT45140.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377726366|gb|EHT50478.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1096]
gi|377729255|gb|EHT53351.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377734866|gb|EHT58903.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1213]
gi|377735382|gb|EHT59415.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377737686|gb|EHT61696.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377753666|gb|EHT77583.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1267]
gi|377756544|gb|EHT80441.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG1524]
gi|377759329|gb|EHT83210.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377760512|gb|EHT84391.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG149]
gi|377763100|gb|EHT86957.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|377764859|gb|EHT88709.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|377769058|gb|EHT92836.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIGC348]
gi|377773182|gb|EHT96928.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIGC128]
gi|383364772|gb|EID42078.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-M]
gi|387714919|gb|EIK03030.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus
VRS1]
gi|387715088|gb|EIK03194.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus
VRS3a]
gi|387715273|gb|EIK03376.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus
VRS2]
gi|387722707|gb|EIK10493.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus
VRS4]
gi|387724421|gb|EIK12078.1| trmE- tRNA modification GTPase [Staphylococcus aureus subsp. aureus
VRS5]
gi|387726662|gb|EIK14210.1| trmE- tRNA modification GTPase [Staphylococcus aureus subsp. aureus
VRS6]
gi|387732601|gb|EIK19816.1| trmE- tRNA modification GTPase [Staphylococcus aureus subsp. aureus
VRS8]
gi|387733958|gb|EIK21116.1| trmE- tRNA modification GTPase [Staphylococcus aureus subsp. aureus
VRS9]
gi|387740830|gb|EIK27753.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus
VRS7]
gi|387741245|gb|EIK28102.1| trmE- tRNA modification GTPase [Staphylococcus aureus subsp. aureus
VRS10]
gi|387741722|gb|EIK28555.1| trmE- tRNA modification GTPase [Staphylococcus aureus subsp. aureus
VRS11a]
gi|387742957|gb|EIK29759.1| trmE- tRNA modification GTPase [Staphylococcus aureus subsp. aureus
VRS11b]
gi|404441524|gb|AFR74717.1| putative tRNA modification GTPase [Staphylococcus aureus 08BA02176]
gi|421955099|gb|EKU07442.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus
aureus CN79]
gi|436429832|gb|ELP27196.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
DSM 20231]
gi|443408226|gb|ELS66754.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21236]
gi|445548377|gb|ELY16629.1| tRNA modification GTPase TrmE [Staphylococcus aureus KT/314250]
gi|445562470|gb|ELY18641.1| tRNA modification GTPase TrmE [Staphylococcus aureus KT/Y21]
Length = 459
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 175/479 (36%), Positives = 272/479 (56%), Gaps = 28/479 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT-SHVV 150
TI +I T +G GA+GIVRLSGP AV+I +++K G SH +
Sbjct: 3 LDTITSISTPMG--EGAIGIVRLSGPQAVEIADKLYK----------GKHLLNDVPSHTI 50
Query: 151 EYGVVLDRHGNVVDEVLAVPML-APRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG ++D V E + V +L AP+++TRED++E+ CHG + + RVL + GA +A
Sbjct: 51 NYGHIIDPESKEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTYGARMA 110
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+
Sbjct: 111 EPGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEI 170
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ ++++ + Q++ L+T K+++ GL IVG+P
Sbjct: 171 LAQVEVNIDYPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKP 230
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 231 NVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIG 290
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD+I+ ++ + T ED L +++ +I+++NK+D +
Sbjct: 291 VERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKNE--------DVIVIVNKMDLEQN 342
Query: 448 ASNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+ N+V + D + T + +GI +LE I + ++ + N R
Sbjct: 343 I--DINEVKDMIGDTPLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISL 400
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + ++ + + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 401 LKQARQTIQDAIDAAESGVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459
>gi|315222529|ref|ZP_07864418.1| tRNA modification GTPase TrmE [Streptococcus anginosus F0211]
gi|315188215|gb|EFU21941.1| tRNA modification GTPase TrmE [Streptococcus anginosus F0211]
Length = 457
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 173/477 (36%), Positives = 272/477 (57%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTNSFAIAQKIFK----------GKDLSTVASHTLN 53
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N ++DEV+ M +P+++TREDV+E+ HG +L+ + GA +A+
Sbjct: 54 YGHIIDPEKNEILDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEILQLAIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE + +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAIMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + + L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTKLLREKTAEFEKLLTQLLKTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIR+TDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q T IL++NK D
Sbjct: 294 ERSKKALQDADLVLLVLNASEPLTEQDRKLLEISQ--------DTNRILLLNKTDL---- 341
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
E +V +D + + Q I +E I ++ + I + N R +
Sbjct: 342 -EEKIEVDQLPDDFIKISVLQNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIE 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + ++ +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 401 KAVESLHAVNEGLDLGMPVDLVQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|171779779|ref|ZP_02920735.1| hypothetical protein STRINF_01616 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281881|gb|EDT47315.1| tRNA modification GTPase TrmE [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 457
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 175/478 (36%), Positives = 271/478 (56%), Gaps = 31/478 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG A+ I +V++ G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDALAIAQKVYR----------GKDLSKVASHTIN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + ++DEV+ MLAP+++TRE+V+E+ HG +L+ L GA LA+
Sbjct: 54 YGHIVDPDNDEILDEVMVSVMLAPKTFTRENVIEINTHGGVAVTNEILQLLLRQGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE + +I AK+ A + A+ + G S L+ R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAIMDIIRAKTDKAMNIAVKQLDGSLSKLINDTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +EN L TA K+L+ GL AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTALIREKTQEFQTLLENLLATAKRGKILREGLSTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDVVEKIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ +++ + T +D LL + + + I+++NK D
Sbjct: 294 ERSKKALEEADLVLLVLNSSEPLTDQDRALLELSKDSNR--------IILLNKTDLPEKI 345
Query: 449 SNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQL 506
+ D V +V Q I +E I ++ + I + N R +
Sbjct: 346 E------ADELPDDVIRISVLKNQNIDLIEERINQLFFDNAGIVEKDATYLSNARHIGLI 399
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++L + ++ +P+D IDL LG+I+GE +E+++ +F +FC+GK
Sbjct: 400 EKAVQSLQSVNEGLKAGMPVDLLQIDLTRCWEILGEITGEAAPDELITKLFTQFCLGK 457
>gi|335028981|ref|ZP_08522494.1| tRNA modification GTPase TrmE [Streptococcus infantis SK1076]
gi|334269682|gb|EGL88096.1| tRNA modification GTPase TrmE [Streptococcus infantis SK1076]
Length = 457
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 177/480 (36%), Positives = 274/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++F+ K SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGSDSFTIAQKIFRDKDLSK----------VASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPQTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ ++ +K + N L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVIREKTLEFEHLLTNLLKTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D P A
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDL-PEA 344
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
+ +D + + Q I +E I + GL + A + N R
Sbjct: 345 I----ETAELPDDVIRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|295697832|ref|YP_003591070.1| tRNA modification GTPase TrmE [Kyrpidia tusciae DSM 2912]
gi|295413434|gb|ADG07926.1| tRNA modification GTPase TrmE [Kyrpidia tusciae DSM 2912]
Length = 461
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 184/478 (38%), Positives = 272/478 (56%), Gaps = 22/478 (4%)
Query: 92 FSTIAA-IVTSIGGPPGAVGI--VRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSH 148
+T+A ++ ++G PG GI +R+SGP +V R+F+ + + SH
Sbjct: 1 MATVAEDVIAAVGTAPGEAGIAVIRVSGPGCARVVERIFRGRQSLQD---------APSH 51
Query: 149 VVEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
+ YG V+D V+DEVLAV M APRSYT EDVVE+ HG + RVL A + AGA
Sbjct: 52 RMVYGAVVDPDTAEVLDEVLAVRMQAPRSYTGEDVVEIHTHGGSAVVGRVLNAVVRAGAR 111
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
A+PGEFT RAFLNGRLDLSQAE V LI +K+ AA AL ++GG S+ V +R +
Sbjct: 112 PAEPGEFTKRAFLNGRLDLSQAEAVIDLIRSKTDAARRLALEQLKGGLSTRVKQMREILL 171
Query: 268 ELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+++ +IE +D+ + ++ + + + + + + + ++ L ++ +L++ G++ AIVGR
Sbjct: 172 DVMAQIEVTIDYPEHDVEDVTIEQIREAVDQVREQIDELLASSRVGRLVREGVRTAIVGR 231
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLNA + ERAIVT I GTTRDV++ + V GV +LDTAGIR T+D VE+I
Sbjct: 232 PNVGKSSLLNALAGRERAIVTAIPGTTRDVVDEWIHVRGVAFQILDTAGIRTTEDEVERI 291
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS AD+++ + ED ELL+RI+ P ++V+NKID
Sbjct: 292 GVERSLKWVAEADLVLCVLDGSSPLEKEDLELLDRIKDR--------PFLVVVNKIDLPG 343
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ + + V A TG G+Q+L + ++V + + N R L
Sbjct: 344 RLAGDGRLEKLPQHRMVRVSARTGDGVQELADRMAQVVLKGEGVSASSCMVTNVRHMALL 403
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+E L + ++ E +D +DLR A LG I GE EE+L+ IF +FC+GK
Sbjct: 404 EEAREDLDAAERAVSEGWTVDVAAVDLRAAWEHLGDILGERAGEELLNRIFSQFCLGK 461
>gi|25010947|ref|NP_735342.1| tRNA modification GTPase TrmE [Streptococcus agalactiae NEM316]
gi|77413158|ref|ZP_00789357.1| tRNA modification GTPase TrmE [Streptococcus agalactiae 515]
gi|32171831|sp|Q8E5T7.1|MNME_STRA3 RecName: Full=tRNA modification GTPase MnmE
gi|23095326|emb|CAD46537.1| unknown [Streptococcus agalactiae NEM316]
gi|77160776|gb|EAO71888.1| tRNA modification GTPase TrmE [Streptococcus agalactiae 515]
Length = 458
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 179/481 (37%), Positives = 275/481 (57%), Gaps = 37/481 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVR+SG A+ I ++++ G SH +
Sbjct: 7 FDTIAAISTPLG--EGAIGIVRISGTDALKIASKIYR----------GKDLSAIQSHTLN 54
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N ++DEV+ MLAP+++TREDV+E+ HG +L+ L GA +A+
Sbjct: 55 YGHIVDPDKNEILDEVMLGVMLAPKTFTREDVIEINTHGGIAVTNEILQLILRHGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V LI AK+ A D A+ + G +L+ + R + + L
Sbjct: 115 PGEFTKRAFLNGRVDLTQAEAVMDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQEILNTL 174
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +EN L TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTTTLMREKTQEFQALMENLLRTARRGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIR+TDDIVEKIGV
Sbjct: 235 VGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ +++ + T +D LL + S ES+ I+++NK D
Sbjct: 295 ERSKKALEEADLVLLVLNSSEPLTLQDRSLL------ELSKESNR--IVLLNKTDLPQKI 346
Query: 449 SNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQC 503
N ++V +V + I +E I I G+ + A + N R
Sbjct: 347 E------VNELPENVIPISVLENENIDKIEERINDIFFDNAGMVEHDA---TYLSNARHI 397
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
+ + ++L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+G
Sbjct: 398 SLIEKAVDSLKAVNEGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLG 457
Query: 564 K 564
K
Sbjct: 458 K 458
>gi|322389428|ref|ZP_08062982.1| thiophene and furan oxidation protein ThdF [Streptococcus
parasanguinis ATCC 903]
gi|321143916|gb|EFX39340.1| thiophene and furan oxidation protein ThdF [Streptococcus
parasanguinis ATCC 903]
Length = 466
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 173/480 (36%), Positives = 272/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 15 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSKVASHTLN 62
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 63 YGHIVDPDKDEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQLVIREGARLAE 122
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 123 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 182
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ ++ +K + N L+TA K+L+ G+ AI+GRPN
Sbjct: 183 AQVEVNIDYPEYDDVEEATTEIIREKTSEFEALLTNLLKTARRGKILREGISTAIIGRPN 242
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 243 VGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAGIRETEDIVEQIGV 302
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q + + I+++NK+D
Sbjct: 303 ERSKKALKEADLVLLVLNASEPLTDQDRQLLEISQDSNR--------IILLNKVDLP--- 351
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E ++ DH+ + Q I +E I + GL + A + N R
Sbjct: 352 --EKIEIDQLPEDHIKISVLKNQNIDQIEDRINALFFENAGLVEQDA---TYLSNARHIS 406
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + + +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 407 LIEKAVESLQAVNEGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 466
>gi|417917546|ref|ZP_12561105.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis SK236]
gi|342830183|gb|EGU64522.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis SK236]
Length = 457
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 173/480 (36%), Positives = 273/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSKVASHTLN 53
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N ++DEV+ M +P+++TRED++E+ HG +++ + GA LA+
Sbjct: 54 YGHIIDPDKNEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEIMQLVIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ ++ +K + N L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTEIIREKTSEFEVLLTNLLKTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 234 VGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAGIRETEDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q + + I+++NK+D
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTDQDRQLLEISQDSNR--------IILLNKVDLP--- 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E ++ DH+ + Q I +E I + GL + A + N R
Sbjct: 343 --EKIEIDQLPEDHIKISVLKNQNIDQIEDRINALFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + + +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|336437714|ref|ZP_08617417.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 1_4_56FAA]
gi|336004723|gb|EGN34782.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 1_4_56FAA]
Length = 458
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 178/476 (37%), Positives = 272/476 (57%), Gaps = 28/476 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI S G +GIVR+SG A I+ R++K KKK S SH + YG
Sbjct: 6 TIAAI--STGMSNSGIGIVRISGDDAFQIIDRIYKG---KKKLSEAD------SHTIHYG 54
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ D G VDEVL M APR++T ED VE+ CHG ++RVL L+ GA A+PGE
Sbjct: 55 FIKD-GGETVDEVLVSVMRAPRTFTGEDTVEINCHGGVYVVQRVLETVLKNGARPAEPGE 113
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNG++DLSQAE V +I++K+ A ++++ ++G + ++R + I
Sbjct: 114 FTKRAFLNGKMDLSQAEAVIDVITSKNEYALQSSVSQLRGSVKKKIETMRETLLYHTAFI 173
Query: 274 EARLDFDDEMPPLNLNLVMDK-IHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
E LD + + ++K + + ++++ +++A ++++ G+Q I+G+PN GKS
Sbjct: 174 ETALDDPEHISVDGYGETLEKELIPIREELKKLIDSAGNGRIIKEGIQTVILGKPNAGKS 233
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLN S ERAIVTEI GTTRDV+E + + G+ + ++DTAGIR+T+D+VEKIGVE++
Sbjct: 234 SLLNVLSGRERAIVTEIEGTTRDVLEEQIHLNGLNLNMIDTAGIRQTEDVVEKIGVEKAR 293
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
A AD+II A D E+ I K +++++NK D P + E
Sbjct: 294 EYAESADLIIYVADASRKLDENDREIAQIIAGKK--------VVVLLNKSDLEPVLTREE 345
Query: 453 NKVGNSFNDHVF----TCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ +F + F A +GI++LE + + + N RQ L
Sbjct: 346 LR---TFLEDEFPVIEVSAKEEKGIRELEQQLKTMFLSGDLSFNDEVMITNMRQKSALQD 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+L +++ SIE+++P DF++IDL DA ALG I+GE I E++++ IF KFC+GK
Sbjct: 403 AYMSLRKVQESIEDQMPEDFYSIDLMDAYEALGSITGETIGEDLVNEIFSKFCMGK 458
>gi|417937401|ref|ZP_12580701.1| tRNA modification GTPase TrmE [Streptococcus infantis SK970]
gi|343391665|gb|EGV04238.1| tRNA modification GTPase TrmE [Streptococcus infantis SK970]
Length = 457
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 178/482 (36%), Positives = 276/482 (57%), Gaps = 39/482 (8%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIVAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G ++DEV+ M +P+++TRED++E+ HG +L+ + GA +A+
Sbjct: 54 YGHIVDPLTGKIMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTLEFEQLLTNLLKTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D P A
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDL-PEA 344
Query: 449 --SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQ 502
++E + D + + Q I +E I + GL + A + N R
Sbjct: 345 IETDELPE------DVIRISVLKNQNIDKIEERINDLFFENAGLVEQDA---TYLSNARH 395
Query: 503 CEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCI 562
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+
Sbjct: 396 ISLIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCL 455
Query: 563 GK 564
GK
Sbjct: 456 GK 457
>gi|392970931|ref|ZP_10336329.1| tRNA modification GTPase mnmE [Staphylococcus equorum subsp.
equorum Mu2]
gi|392510933|emb|CCI59588.1| tRNA modification GTPase mnmE [Staphylococcus equorum subsp.
equorum Mu2]
Length = 460
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 171/478 (35%), Positives = 266/478 (55%), Gaps = 26/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TI +I T +G GA+GIVRLSG AV++ ++FK +K TSH +
Sbjct: 4 LDTITSISTPMG--EGAIGIVRLSGADAVNVADKLFKGKQK---------LVDVTSHTIN 52
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D V++EV+ + AP+++TRED+VE+ CHG + + RVL + GA +A+
Sbjct: 53 YGHIIDPESEEVIEEVMVSVLRAPKTFTREDIVEINCHGGILTINRVLELTMSNGARMAE 112
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S ++ R +E+L
Sbjct: 113 PGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDMIKRQRQSILEIL 172
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ ++ K + +++ LET K+++ GL IVG+PN
Sbjct: 173 AQVEVNIDYPEYDDVEDATTEFLLGKSSEIKEEINKLLETGTQGKIMREGLSTVIVGKPN 232
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSS+LN + +AIVTE+ GTTRD +E V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 233 VGKSSMLNNLIQDNKAIVTEVPGTTRDTLEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 292
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD+I+ ++ + + ED +L I++ I+++NK+D
Sbjct: 293 ERSRKALGEADLILFVLNYNEALSEEDRKLYEVIKNEDA--------IVIVNKMDLDKQL 344
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ ++V D + T + +GI LE I + + + N R L
Sbjct: 345 --DIDEVKAMVGDMPLIQTSMLKQEGIDQLEIQIRDLFFGGDVQNQDMTYVSNSRHISLL 402
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + + E ++P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 403 KEARNTIQDAIDAAESDIPMDMIQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 460
>gi|339301636|ref|ZP_08650730.1| tRNA modification GTPase TrmE [Streptococcus agalactiae ATCC 13813]
gi|319744919|gb|EFV97251.1| tRNA modification GTPase TrmE [Streptococcus agalactiae ATCC 13813]
Length = 469
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 179/481 (37%), Positives = 275/481 (57%), Gaps = 37/481 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVR+SG A+ I ++++ G SH +
Sbjct: 18 FDTIAAISTPLG--EGAIGIVRISGTDALKIASKIYR----------GKDLSAIQSHTLN 65
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N ++DEV+ MLAP+++TREDV+E+ HG +L+ L GA +A+
Sbjct: 66 YGHIVDPDKNEILDEVMLGVMLAPKTFTREDVIEINTHGGIAVTNEILQLILRHGARMAE 125
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V LI AK+ A D A+ + G +L+ + R + + L
Sbjct: 126 PGEFTKRAFLNGRVDLTQAEAVMDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQEILNTL 185
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +EN L TA K+L+ GL AI+GRPN
Sbjct: 186 AQVEVNIDYPEYDDVEEMTTTLMREKTQEFQALMENLLRTARRGKILREGLSTAIIGRPN 245
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIR+TDDIVEKIGV
Sbjct: 246 VGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGV 305
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ +++ + T +D LL + S ES+ I+++NK D
Sbjct: 306 ERSKKALEEADLVLLVLNSSEPLTLQDRSLL------ELSKESNR--IVLLNKTDLPQKI 357
Query: 449 SNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQC 503
N ++V +V + I +E I I G+ + A + N R
Sbjct: 358 E------VNELPENVIPISVLENENIDKIEERINDIFFDNAGMVEHDAT---YLSNARHI 408
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
+ + ++L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+G
Sbjct: 409 SLIEKAVDSLKAVNEGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLG 468
Query: 564 K 564
K
Sbjct: 469 K 469
>gi|422878762|ref|ZP_16925228.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK1059]
gi|422928610|ref|ZP_16961552.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
ATCC 29667]
gi|422931585|ref|ZP_16964516.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK340]
gi|332366815|gb|EGJ44556.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK1059]
gi|339616252|gb|EGQ20904.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
ATCC 29667]
gi|339619885|gb|EGQ24460.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK340]
Length = 479
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 170/477 (35%), Positives = 274/477 (57%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 28 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKNLSKVESHTLN 75
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++ ++DEV+ M +P+++TRED++E+ HG +L+ + GA +A+
Sbjct: 76 YGHIVDPQNQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARMAE 135
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S+L+ + R K + L
Sbjct: 136 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQKILNTL 195
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + N L+TA K+L+ G+ AI+GRPN
Sbjct: 196 AQVEVNIDYPEYDDVEEMTTQLMREKTAEFEALLSNLLDTARRGKILREGISTAIIGRPN 255
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 256 VGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGV 315
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q + + I+++NK D
Sbjct: 316 ERSKKALQEADLVLLVLNASEPLTDQDRQLLEISQDSNR--------IVLLNKTDL---- 363
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
E ++ D + + Q I +E I ++ + I + N R +
Sbjct: 364 -EEKIELDQLPTDVIKISVLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIE 422
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 423 KALESLQAVNQGLEMGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 479
>gi|386337588|ref|YP_006033757.1| tRNA modification GTPase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|334280224|dbj|BAK27798.1| tRNA modification GTPase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
Length = 457
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 177/478 (37%), Positives = 272/478 (56%), Gaps = 31/478 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG A+ I +V++ G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTEALAIAQKVYR----------GKDLNKVASHTIN 53
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + + V+DEV+ MLAP+++T E+VVE+ HG +L+ L GA LA+
Sbjct: 54 YGHIVDPNTDEVLDEVMVSVMLAPKTFTCENVVEINTHGGVAVTNEILQLVLRQGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSQLINDTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + +EN L TA K+L+ GL AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTALIREKTQEFQELLENLLRTAKRGKILREGLSTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDVVEKIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ +++ + T +D LL + + + I+++NK D
Sbjct: 294 ERSKKALEEADLVLLVLNSSEPLTDQDRALLELSKDSNR--------IILLNKTDLPEKI 345
Query: 449 SNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQL 506
+ D V +V Q I +E I ++ + I + N R +
Sbjct: 346 E------ADQLPDDVIRISVLKNQNIDVIEERINQLFFDNAGIVEKDATYLSNARHISLI 399
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++L + +E +P+D IDL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 400 EKAVQSLQAVNEGLELGMPVDLLQIDLTRCWEILGEITGDAAPDELITKLFSQFCLGK 457
>gi|389856987|ref|YP_006359230.1| tRNA modification GTPase TrmE [Streptococcus suis ST1]
gi|353740705|gb|AER21712.1| tRNA modification GTPase TrmE [Streptococcus suis ST1]
Length = 457
Score = 291 bits (746), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 181/480 (37%), Positives = 267/480 (55%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A I +VFK G SH +
Sbjct: 6 FDTITAISTPLG--EGAIGIVRLSGTDAFAIASKVFK----------GKDLATVPSHSLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TREDV+E+ HG +L+ + GA +A+
Sbjct: 54 YGHIIDPATGQVLDEVMLGVMRSPKTFTREDVIEINTHGGIAVTNEILQLLIRQGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDVIRAKTDKAMHNAVRQLDGSLSQLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ LV +K +EN L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTELVREKTLQFQALLENLLRTARRGKILREGIATAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVEKIGV
Sbjct: 234 VGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDIVEKIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD+I++ ++A + T +D LL + I+++NK D
Sbjct: 294 ERSKKALEEADLILLVLNASEPLTEQDRNLL--------AISDMANRIVLLNKTDL---- 341
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E + D + + Q I +E I ++ GL + A + N R
Sbjct: 342 -EEQIEADQLPEDVIRISVLKNQNIDQIEEKINQLFFENAGLVEQDA---TYLSNSRHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEQAVQSLQAVNDGLEMSMPVDLLQVDLTRCWQILGEITGDAAPDELITQLFSQFCLGK 457
>gi|442806178|ref|YP_007374327.1| tRNA modification GTPase MnmE [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442742028|gb|AGC69717.1| tRNA modification GTPase MnmE [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 416
Score = 291 bits (746), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 166/424 (39%), Positives = 250/424 (58%), Gaps = 18/424 (4%)
Query: 147 SHVVEYGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAG 205
SH + YG ++D N V+DEVL M AP++YT EDVVE+ CHG V RR+L G
Sbjct: 5 SHTIRYGKIVDPETNEVIDEVLVSKMAAPKTYTTEDVVEINCHGGFVTARRILDLLFRLG 64
Query: 206 ATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAK 265
A A+PGEFT RAF+NGR+DL QAE + LI A + ++ AA+ ++G S + +R
Sbjct: 65 ARPAEPGEFTKRAFINGRIDLVQAEAIMDLIGAVTEKSSKAAVMQLEGRLSEKLNKIRES 124
Query: 266 CIELLTEIEARLDFDDEMPPLNLNLVMDK-----IHAMSQDVENALETANYDKLLQSGLQ 320
+ +L +IE LD+ P + V + I+++ D++ +E+ +Y K+L+ GL
Sbjct: 125 LVNILAKIEVNLDY----PEYDFEEVTTRECVQVINSIKGDLKTLIESFDYGKVLREGLN 180
Query: 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD 380
+AI+G+PN GKSSLLN S RAIVT+I GTTRD++E V + G+PV LLDTAG+RET
Sbjct: 181 VAIIGKPNAGKSSLLNRLSGKNRAIVTDIPGTTRDILEEYVNIQGLPVRLLDTAGLRETT 240
Query: 381 DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVIN 440
D+VEKIGVE++ V AD+II + A G+ ED ++L +I+ + ++ V+N
Sbjct: 241 DVVEKIGVEKALEVIDTADLIIFMLDAQTGFEKEDRDILEKIRR------YYSKVLYVVN 294
Query: 441 KIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQ 500
K D P + ++ + + + GI +LE AI++ V +I + N
Sbjct: 295 KTD-RPDKE-KLEEIRRIIPETIEISVLEDYGIDNLEKAILEFVNKARIDTDNQIIVTNA 352
Query: 501 RQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKF 560
R + L E L S+ E + LD ++D+++AA +G I+G +++EEV+ NIF F
Sbjct: 353 RHKKLLNEALENLNSAVSAAENGMTLDLISMDIKNAAEKIGFITGHEVTEEVVMNIFENF 412
Query: 561 CIGK 564
CIGK
Sbjct: 413 CIGK 416
>gi|358464986|ref|ZP_09174944.1| tRNA modification GTPase TrmE [Streptococcus sp. oral taxon 058
str. F0407]
gi|357066515|gb|EHI76665.1| tRNA modification GTPase TrmE [Streptococcus sp. oral taxon 058
str. F0407]
Length = 457
Score = 291 bits (746), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 178/480 (37%), Positives = 274/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSQVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +V +K Q + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIR+T+DIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTEDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D P A
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDL-PEA 344
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
+ +D + + Q I +E I + GL + A + N R
Sbjct: 345 I----ETSELPDDVIRISVLKNQNIDKIEERINDLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|49487489|ref|YP_044710.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
MSSA476]
gi|73919890|sp|Q6G5W4.1|MNME_STAAS RecName: Full=tRNA modification GTPase MnmE
gi|49245932|emb|CAG44413.1| probable tRNA modification GTPase [Staphylococcus aureus subsp.
aureus MSSA476]
Length = 459
Score = 291 bits (746), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 175/479 (36%), Positives = 272/479 (56%), Gaps = 28/479 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT-SHVV 150
TI +I T +G GA+GIVRLSGP AV+I +++K G SH +
Sbjct: 3 LDTITSISTPMG--EGAIGIVRLSGPQAVEIADKLYK----------GKHLLNDVPSHTI 50
Query: 151 EYGVVLDRHGNVVDEVLAVPML-APRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG ++D V E + V +L AP+++TRED++E+ CHG + + RVL + GA +A
Sbjct: 51 NYGHIIDPESKEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTYGARMA 110
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+
Sbjct: 111 EPGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEI 170
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ ++++ + Q++ L+T K+++ GL IVG+P
Sbjct: 171 LAQVEVNIDYPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKP 230
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 231 NVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIG 290
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD+I+ ++ + T ED L +++ +I+++NK+D +
Sbjct: 291 VERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKNE--------DVIVIVNKMDLEQN 342
Query: 448 ASNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+ N+V + D + T + +GI +LE I + ++ + N R
Sbjct: 343 I--DINEVKDMIGDTPLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISL 400
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + ++ + + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 401 LKQARQTIQDAIDAAESGVPMDMVQIDLTRIWEILGEIIGETASDELIDQLFSQFCLGK 459
>gi|22537039|ref|NP_687890.1| tRNA modification GTPase TrmE [Streptococcus agalactiae 2603V/R]
gi|76788077|ref|YP_329621.1| tRNA modification GTPase TrmE [Streptococcus agalactiae A909]
gi|77410695|ref|ZP_00787054.1| tRNA modification GTPase TrmE [Streptococcus agalactiae CJB111]
gi|406709365|ref|YP_006764091.1| tRNA modification GTPase TrmE [Streptococcus agalactiae
GD201008-001]
gi|417005149|ref|ZP_11943742.1| tRNA modification GTPase TrmE [Streptococcus agalactiae FSL S3-026]
gi|424049561|ref|ZP_17787112.1| tRNA modification GTPase TrmE [Streptococcus agalactiae ZQ0910]
gi|32171818|sp|Q8CX13.1|MNME_STRA5 RecName: Full=tRNA modification GTPase MnmE
gi|123601915|sp|Q3K1I2.1|MNME_STRA1 RecName: Full=tRNA modification GTPase MnmE
gi|22533896|gb|AAM99762.1|AE014231_20 tRNA modification GTPase TrmE [Streptococcus agalactiae 2603V/R]
gi|76563134|gb|ABA45718.1| tRNA modification GTPase TrmE [Streptococcus agalactiae A909]
gi|77163231|gb|EAO74183.1| tRNA modification GTPase TrmE [Streptococcus agalactiae CJB111]
gi|341576962|gb|EGS27370.1| tRNA modification GTPase TrmE [Streptococcus agalactiae FSL S3-026]
gi|389648834|gb|EIM70323.1| tRNA modification GTPase TrmE [Streptococcus agalactiae ZQ0910]
gi|406650250|gb|AFS45651.1| tRNA modification GTPase TrmE [Streptococcus agalactiae
GD201008-001]
Length = 458
Score = 291 bits (746), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 179/481 (37%), Positives = 275/481 (57%), Gaps = 37/481 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVR+SG A+ I ++++ G SH +
Sbjct: 7 FDTIAAISTPLG--EGAIGIVRISGTDALKIASKIYR----------GKDLSAIQSHTLN 54
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N ++DEV+ MLAP+++TREDV+E+ HG +L+ L GA +A+
Sbjct: 55 YGHIVDPDKNEILDEVMLGVMLAPKTFTREDVIEINTHGGIAVTNEILQLILRHGARMAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V LI AK+ A D A+ + G +L+ + R + + L
Sbjct: 115 PGEFTKRAFLNGRVDLTQAEAVMDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQEILNTL 174
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K +EN L TA K+L+ GL AI+GRPN
Sbjct: 175 AQVEVNIDYPEYDDVEEMTTTLMREKTQEFQALMENLLRTARRGKILREGLSTAIIGRPN 234
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIR+TDDIVEKIGV
Sbjct: 235 VGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGV 294
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ +++ + T +D LL + S ES+ I+++NK D
Sbjct: 295 ERSKKALEEADLVLLVLNSSEPLTLQDRSLL------ELSKESNR--IVLLNKTDLPQKI 346
Query: 449 S-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQC 503
NE K + + + + I +E I I G+ + A + N R
Sbjct: 347 EVNELPK------NVIPISVLENENIDKIEERINDIFFDNAGMVEHDA---TYLSNARHI 397
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
+ + ++L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+G
Sbjct: 398 SLIEKAVDSLKAVNEGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLG 457
Query: 564 K 564
K
Sbjct: 458 K 458
>gi|288905136|ref|YP_003430358.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain
[Streptococcus gallolyticus UCN34]
gi|288731862|emb|CBI13427.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain
[Streptococcus gallolyticus UCN34]
Length = 457
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 177/478 (37%), Positives = 272/478 (56%), Gaps = 31/478 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG A+ I +V++ G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTEALAIAQKVYR----------GKDLNKVASHTIN 53
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + V+DEV+ MLAP+++T E+VVE+ HG +L+ L GA LA+
Sbjct: 54 YGHIVDPDTDEVLDEVMVSVMLAPKTFTCENVVEINTHGGVAVTNEILQLVLRQGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSQLINDTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + +EN L TA K+L+ GL AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTALIREKTQEFQELLENLLRTAKRGKILREGLSTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDVVEKIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ +++ + T++D LL + + + I+++NK D
Sbjct: 294 ERSKKALEEADLVLLVLNSSEPLTNQDRALLELSKDSNR--------IILLNKTDLPEKI 345
Query: 449 SNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQL 506
+ D V +V Q I +E I ++ + I + N R +
Sbjct: 346 E------ADQLPDDVIRISVLKNQNIDVIEERINQLFFDNAGIVEKDATYLSNARHISLI 399
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++L + +E +P+D IDL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 400 EKAVQSLQAVNEGLELGMPVDLLQIDLTRCWEILGEITGDAAPDELITKLFSQFCLGK 457
>gi|421075121|ref|ZP_15536136.1| tRNA modification GTPase mnmE [Pelosinus fermentans JBW45]
gi|392526563|gb|EIW49674.1| tRNA modification GTPase mnmE [Pelosinus fermentans JBW45]
Length = 461
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 184/475 (38%), Positives = 284/475 (59%), Gaps = 23/475 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI+ I T+ G GA+GI+R+SG + + I F+ + +G + S V YG
Sbjct: 6 TISTIATAPG--EGAIGIIRMSGSLTIKIAETFFRGI-------NGKSARHIASQQVAYG 56
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D +G V+DEVL + M P+SYTREDVVE+ CHG V ++++L L+ GA L++PG
Sbjct: 57 HIIDPDNGLVIDEVLLLVMHGPKSYTREDVVEIHCHGGPVPMKKILALTLQYGARLSEPG 116
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGRLDLSQAE V +I AK+ A+ A+ + G S + +R + + ++
Sbjct: 117 EFTKRAFLNGRLDLSQAEAVMDIIRAKTDASLRMAVGHLSGALSDEIRKMRYEILRMIAN 176
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
+EA +DF ++++ L V + + DV + L T ++L+ GL+ I+G+PNVGK
Sbjct: 177 LEATIDFPEEDIEVLAAQDVRAAVELLLADVNHLLLTKETGRILREGLETVILGKPNVGK 236
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLNA K +RAIVT+I GTTRDVIE V + GVP+ ++DTAGIRET DI+E++GVE++
Sbjct: 237 SSLLNALLKEKRAIVTDIPGTTRDVIEEFVNLSGVPLKIVDTAGIRETSDIIEQMGVEKA 296
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
+ + AD+I++ + A ++ED E+L + S I+++NK D P N
Sbjct: 297 KEFVVTADLILLLLDASLPLSAEDREVLAML--------SGKQAIVLVNKTDL-PVLLN- 346
Query: 452 WNKVGNSFND-HVFTCAVT-GQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
++V D V +V G G+ +LE I+ +V +I + N RQ L +
Sbjct: 347 LDEVYTYIADTKVLKISVMEGTGLPELEQMIVDMVYGGEIAQKEGAFLTNLRQANLLEQA 406
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K L ++I+E +P D IDL+++ LG+I+G+ + E+++ IF +FCIGK
Sbjct: 407 KYHLEATIATIDEGMPSDCIVIDLKESWDKLGEITGDTVGEDIIDQIFTQFCIGK 461
>gi|308071639|ref|YP_003873244.1| tRNA modification GTPase trmE [Paenibacillus polymyxa E681]
gi|305860918|gb|ADM72706.1| Probable tRNA modification GTPase trmE [Paenibacillus polymyxa
E681]
Length = 458
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 182/474 (38%), Positives = 272/474 (57%), Gaps = 23/474 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++G G + +VR+SGP AV V +F+ S S PT H V YG
Sbjct: 5 TIAAIATAVG--EGGIAVVRISGPEAVTEVEALFR--------SKTPLSKAPT-HTVHYG 53
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D + V+EVL M APRS+T EDVVE+ HG V ++RV+ L LA+PG
Sbjct: 54 HIIDPQSQEKVEEVLVTVMRAPRSFTTEDVVEISTHGGVVAVKRVMDLLLLQNIRLAEPG 113
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQAE V LI +KS A AL + G S + +R +E L
Sbjct: 114 EFTKRAFLNGRIDLSQAEGVIDLIRSKSDKAFSVALKQVDGQLSQNIRRLRHVLVETLAH 173
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IE +D+ + ++ +L+ DK + +++ L TA K+L+ GL AIVGRPNVGK
Sbjct: 174 IEVNIDYPEHDVESFTSDLIKDKSSQVMTEIDRLLHTAEQGKILREGLTTAIVGRPNVGK 233
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLN ++ ERAIVT+I GTTRDVIE VT+ +P+ LLDTAGIRET D+VE+IGVERS
Sbjct: 234 SSLLNTLAQGERAIVTDIPGTTRDVIEEYVTINSIPLKLLDTAGIRETMDVVERIGVERS 293
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
AD++++ ++A + ++ L+ +I+ + I+++NK+D P+ +
Sbjct: 294 RTAVSEADLLLIVINANEPLHEDEMALMEQIRGRQA--------IVIMNKMDL-PAQVDR 344
Query: 452 WNKVGNSFNDHVFTCAVT-GQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+ + + +V +G LE AI + ++ + + N R L + +
Sbjct: 345 DLLLRYVPEELIVPMSVKENEGADRLEQAISNLFFSGKLESADMTYVSNVRHIALLKKAR 404
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++LV + ++ +P+D ID+R A LG+I G+ + ++ IF +FC+GK
Sbjct: 405 QSLVDAYEAADQFVPIDMIQIDVRLAWEHLGEIVGDTAHDALIDQIFSQFCLGK 458
>gi|302877170|ref|YP_003845803.1| tRNA modification GTPase TrmE [Clostridium cellulovorans 743B]
gi|307687869|ref|ZP_07630315.1| tRNA modification GTPase TrmE [Clostridium cellulovorans 743B]
gi|302580027|gb|ADL54039.1| tRNA modification GTPase TrmE [Clostridium cellulovorans 743B]
Length = 459
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 171/476 (35%), Positives = 277/476 (58%), Gaps = 23/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T IG G + I+R+SG A+ + ++F+ ++G + +
Sbjct: 4 FDTIAAIATPIG--EGGISIIRISGNSALSVASKLFRS-------ANGKDLMDIKPYTMR 54
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + ++DEV+ M AP+S+T ED VE+ CHG + +R+L L+ G +A
Sbjct: 55 YGNIIDLENEEIIDEVIVSYMKAPKSFTAEDTVEINCHGGLISTKRILEVVLKQGVRIAD 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V +I+AK+ A +A+A G S + +R + + ++
Sbjct: 115 PGEFTKRAFLNGRIDLSQAEAVMDIITAKTDLAMKSAVAQSGGRVSREIKVLREELLAMI 174
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IEA +D+ +D++ + ++ ++ + + +E L+TA K+L+ GL IVG+PNV
Sbjct: 175 AHIEATVDYPEDDLEEMTAEKTINDLNKLQERIEYLLKTAEEGKILREGLSTVIVGKPNV 234
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + RAIVT++AGTTRDVIE + + GVP+ ++DTAGIRETDD+VEKIGVE
Sbjct: 235 GKSSLLNLLTNENRAIVTDVAGTTRDVIEEYINMDGVPIKVIDTAGIRETDDLVEKIGVE 294
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
+S+ AD+II+ + + ED ++ + I+ K I++ NK D
Sbjct: 295 KSKEKIEEADLIILMLDSSRELDEEDLKIADYIKDKK--------YIVLFNKSDLKGKLK 346
Query: 450 NEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + NS ++ +V G+GI+ L+ I ++ +I + N R + L R
Sbjct: 347 KEDIQCLNS--KYMIDVSVFNGEGIERLKEIIKELFFSGEIKS-QEILITNSRHKDVLYR 403
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + +++ +D +IDLR+A G+I+G+ ++E+++ IF +FC+GK
Sbjct: 404 ANDNISNAIEALKNTSAIDLASIDLRNAWSNFGEITGDTLAEDLIDKIFKEFCLGK 459
>gi|422821166|ref|ZP_16869359.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK353]
gi|324991080|gb|EGC23014.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK353]
Length = 457
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 169/477 (35%), Positives = 274/477 (57%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKNLSKVESHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++ ++DEV+ M +P+++TRED++E+ HG +L+ + GA +A+
Sbjct: 54 YGHIVDPQNQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S+L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + N L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTQLMREKTAEFEALLSNLLDTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q + + I+++NK D
Sbjct: 294 ERSKKALQEADLVLLVLNASESLTEQDRQLLEISQDSNR--------IVLLNKTDL---- 341
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
E ++ D + + Q I +E I ++ + I + N R +
Sbjct: 342 -EEKIELDQLPADAIKISVLHNQNIDKIEERINQLFFENAGIVEQDATYLSNTRHISLIE 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 401 KALESLQAVNQGLEMGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|374321351|ref|YP_005074480.1| tRNA modification GTPase trmE [Paenibacillus terrae HPL-003]
gi|357200360|gb|AET58257.1| tRNA modification GTPase trmE [Paenibacillus terrae HPL-003]
Length = 458
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 180/474 (37%), Positives = 272/474 (57%), Gaps = 23/474 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++G G + +VR+SGP AV V +F+ S + + SH V YG
Sbjct: 5 TIAAIATAVG--EGGIAVVRVSGPEAVTEVETLFR---------SKTPLSKAPSHTVHYG 53
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D + V+EVL M APRS+T EDVVE+ HG V ++RV+ L LA+PG
Sbjct: 54 HIIDPQSQEKVEEVLVTVMRAPRSFTTEDVVEISTHGGVVAVKRVMDLLLLQNIRLAEPG 113
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQAE V LI +KS A AL + G S + +R +E L
Sbjct: 114 EFTKRAFLNGRIDLSQAEGVIDLIRSKSDKAFSVALKQVDGQLSQNIRRLRHVLVETLAH 173
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IE +D+ + ++ L+ DK + +++ L TA K+L+ GL AIVGRPNVGK
Sbjct: 174 IEVNIDYPEHDVESFTSELIKDKSSQVMAEIDRLLHTAEQGKILREGLTTAIVGRPNVGK 233
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLN ++ ERAIVT+I GTTRDVIE VT+ +P+ LLDTAGIRET D+VE+IGVERS
Sbjct: 234 SSLLNTLAQGERAIVTDIPGTTRDVIEEYVTINSIPLKLLDTAGIRETMDVVERIGVERS 293
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
AD++++ ++A + ++ L+ +I+ + I+++NK+D P+ +
Sbjct: 294 RTAVSEADLLLIVINANEPLHEDEMALMEQIRGRQA--------IVIMNKMDL-PAQVDR 344
Query: 452 WNKVGNSFNDHVFTCAVT-GQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+ + + +V +G LE AI ++ ++ + + N R L + +
Sbjct: 345 DLLLRYVPEELIVPMSVKENEGADRLEQAISQLFFSGKLESADMTYVSNVRHIALLKKAR 404
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++LV + ++ +P+D ID+R A LG+I G+ + ++ IF +FC+GK
Sbjct: 405 QSLVDAYEAADQFVPIDMIQIDVRLAWEHLGEIVGDTAHDALIDQIFSQFCLGK 458
>gi|291539801|emb|CBL12912.1| tRNA modification GTPase trmE [Roseburia intestinalis XB6B4]
Length = 457
Score = 291 bits (745), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 179/476 (37%), Positives = 274/476 (57%), Gaps = 28/476 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++ +GI+R+SG AV IV R+F +K KK S PT H + YG
Sbjct: 5 TIAAIATAM--SSSGIGIIRISGDEAVGIVDRIF-SMKNGKKLSD-----MPT-HTIHYG 55
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ D V+DEV+ V M AP+SYT+ED VE+ CHG ++RVL ++ GA A+PGE
Sbjct: 56 HIKD-GDEVIDEVMVVLMRAPKSYTKEDTVEIDCHGGVYVMKRVLETVIKYGARPAEPGE 114
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGR+DL+QAE+V +I AK+ A ++ + G S+ V VR K + + I
Sbjct: 115 FTKRAFLNGRIDLAQAESVIDIIHAKNEFALKSSEQQLSGSLSAAVRKVREKLLHEIAFI 174
Query: 274 EARLDFDDEMPPLNLNLVMDKIHAMSQDVENALET--ANYD--KLLQSGLQIAIVGRPNV 329
E+ LD + ++L+ + +H + ++ + ++ AN D K+L+ G+ I+G+PN
Sbjct: 175 ESALD---DPEHISLDGYPETLHGIVEEAQKEIQKLLANSDNGKILKEGISTVIIGKPNA 231
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ERAIVT+IAGTTRDV+E + + G+ + ++DTAGIRETDD+VEKIGV+
Sbjct: 232 GKSSLLNTLVGEERAIVTDIAGTTRDVLEEQINLNGIILNVIDTAGIRETDDVVEKIGVD 291
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
R++ AD+ I V D E++ ++ K I+++NK D P
Sbjct: 292 RAKKYLNEADLAIYVVDTSTQLDENDFEIMELLKDRKA--------IVLLNKSDLTPVTD 343
Query: 450 NEWNKVGNSFNDHVFTCAVTGQ-GIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+E + + + + Q GI++LE I ++ ++ + N R L
Sbjct: 344 SE--SIRKHLDKKMIAISAKEQTGIEELEETIREMFFTGEVTFNDEVYITNIRHKTALQE 401
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ +L + SI + +P DF++IDL +A LG I GE + +++++ IF KFC+GK
Sbjct: 402 ARNSLNLVVQSILDGMPEDFYSIDLMNAYEELGSIVGEAVEDDLVNEIFSKFCMGK 457
>gi|240145748|ref|ZP_04744349.1| tRNA modification GTPase TrmE [Roseburia intestinalis L1-82]
gi|257202164|gb|EEV00449.1| tRNA modification GTPase TrmE [Roseburia intestinalis L1-82]
Length = 457
Score = 291 bits (745), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 179/476 (37%), Positives = 274/476 (57%), Gaps = 28/476 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++ +GI+R+SG AV IV R+F +K KK S PT H + YG
Sbjct: 5 TIAAIATAM--SSSGIGIIRISGDEAVGIVDRIF-SMKNGKKLSD-----MPT-HTIHYG 55
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ D V+DEV+ V M AP+SYT+ED VE+ CHG ++RVL ++ GA A+PGE
Sbjct: 56 HIKDV-DEVIDEVMVVLMRAPKSYTKEDTVEIDCHGGVYVMKRVLETVIKYGARPAEPGE 114
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGR+DL+QAE+V +I AK+ A ++ + G S+ V VR K + + I
Sbjct: 115 FTKRAFLNGRIDLAQAESVIDIIHAKNEFALKSSEQQLSGSLSAAVRKVREKLLHEIAFI 174
Query: 274 EARLDFDDEMPPLNLNLVMDKIHAMSQDVENALET--ANYD--KLLQSGLQIAIVGRPNV 329
E+ LD + ++L+ + +H + ++ + ++ AN D K+L+ G+ I+G+PN
Sbjct: 175 ESALD---DPEHISLDGYPETLHGIVEEAQKEIQKLLANSDNGKILKEGISTVIIGKPNA 231
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ERAIVT+IAGTTRDV+E + + G+ + ++DTAGIRETDD+VEKIGV+
Sbjct: 232 GKSSLLNTLVGEERAIVTDIAGTTRDVLEEQINLNGIILNVIDTAGIRETDDVVEKIGVD 291
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
R++ AD+ I V D E++ ++ K I+++NK D P
Sbjct: 292 RAKKYLNEADLAIYVVDTSTQLDENDFEIMELLKDRKA--------IVLLNKSDLTPVTD 343
Query: 450 NEWNKVGNSFNDHVFTCAVTGQ-GIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+E + + + + Q GI++LE I ++ ++ + N R L
Sbjct: 344 SE--SIRKHLDKKMIAISAKEQTGIEELEETIREMFFTGEVTFNDEVYITNIRHKTALQE 401
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ +L + SI + +P DF++IDL +A LG I GE + +++++ IF KFC+GK
Sbjct: 402 ARNSLNLVVQSILDGMPEDFYSIDLMNAYEELGSIVGEAVEDDLVNEIFSKFCMGK 457
>gi|306833320|ref|ZP_07466448.1| tRNA modification GTPase TrmE [Streptococcus bovis ATCC 700338]
gi|336064106|ref|YP_004558965.1| tRNA modification GTPase [Streptococcus pasteurianus ATCC 43144]
gi|304424517|gb|EFM27655.1| tRNA modification GTPase TrmE [Streptococcus bovis ATCC 700338]
gi|334282306|dbj|BAK29879.1| tRNA modification GTPase [Streptococcus pasteurianus ATCC 43144]
Length = 457
Score = 291 bits (745), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 178/478 (37%), Positives = 269/478 (56%), Gaps = 31/478 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG A+ I +V+ G SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTEALAIAQKVY----------HGKDLNEVASHTIN 53
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + V+DEV+ MLAP+++T E+VVE+ HG +L+ L GA LA+
Sbjct: 54 YGHIVDPDTDEVLDEVMVSVMLAPKTFTCENVVEINTHGGVAVTNEILQLVLRQGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSQLINDTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + +EN L TA K+L+ GL AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTALIREKTQEFQELLENLLRTAKRGKILREGLSTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGV
Sbjct: 234 VGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDVVEKIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ +++ + T +D LL + + + I+++NK D
Sbjct: 294 ERSKKALEEADLVLLVLNSSEPLTDQDRALLELSKDSNR--------IILLNKTDLPEKI 345
Query: 449 SNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQL 506
+ D V +V Q I +E I ++ + I + N R +
Sbjct: 346 E------ADQLPDDVIRISVLKNQNIDVIEERINQLFFANAGIVEKDATYLSNARHISLI 399
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++L + +E +P+D IDL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 400 EKAVQSLQAVNEGLELGMPVDLLQIDLTRCWEILGEITGDAAPDELITKLFSQFCLGK 457
>gi|328952573|ref|YP_004369907.1| tRNA modification GTPase mnmE [Desulfobacca acetoxidans DSM 11109]
gi|328452897|gb|AEB08726.1| tRNA modification GTPase mnmE [Desulfobacca acetoxidans DSM 11109]
Length = 456
Score = 291 bits (744), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 180/476 (37%), Positives = 274/476 (57%), Gaps = 29/476 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T G G +GIVRLSGP + I R+F+P + + +W P ++
Sbjct: 5 TIAAISTPPG--EGGIGIVRLSGPDSRAIADRIFRPARPH------TPTW-PARRLILGQ 55
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+V G VDEVL M P SYTREDV+E+QCH L+R+L+ L+AGA LA PGE
Sbjct: 56 IVSPEDGQAVDEVLLAFMPRPHSYTREDVIEIQCHSGYAVLQRILQLTLQAGARLADPGE 115
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FTLRAFL+GRLDL+QAE V ++I A+S A+ A A + GG +T +R ++LL +
Sbjct: 116 FTLRAFLSGRLDLTQAEAVLEVIQARSDASLRVAAAHLAGGLGRHLTRLRDDLLDLLALV 175
Query: 274 EARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSS 333
EA LDF +E+P ++L ++ ++ A+ ++ ++ ++L+ GLQ+ + GRPNVGKSS
Sbjct: 176 EADLDFGEEVPEIDLAALVHQLEALESEITALCQSYAQGRMLRQGLQVVLAGRPNVGKSS 235
Query: 334 LLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEA 393
LLN +++RAIVT+I GTTRDVI ++ + G+PV LLDTAG+R ++VE+IG++R++
Sbjct: 236 LLNRLLQTDRAIVTDIPGTTRDVIAENLVIQGLPVCLLDTAGLRPAQNLVEEIGIQRTQE 295
Query: 394 VALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID----CAPSAS 449
AD+++ + A W ED L ++ +++V+NKID P+A
Sbjct: 296 HLQQADLVLYLLDASQPWQVEDEPQLQALRDQS--------ILVVLNKIDLPRVLQPAA- 346
Query: 450 NEWNKVGNSFNDHVF-TCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ +++ H+ A+TG+GI L+ AI + P G + R C L
Sbjct: 347 -----IPSAWPHHLIEISALTGEGIPALKEAIFQAGMGGASPLDG-QIVTQARHCRHLEH 400
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ L I+ P + ++LR A L I G ++ +EVL +F +FC+GK
Sbjct: 401 CRHHLQGAWKIIQTAQPRELLALELRSALQELSAILGLEVDDEVLDRVFARFCLGK 456
>gi|417090142|ref|ZP_11955812.1| tRNA modification GTPase TrmE [Streptococcus suis R61]
gi|353533722|gb|EHC03367.1| tRNA modification GTPase TrmE [Streptococcus suis R61]
Length = 457
Score = 291 bits (744), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 181/480 (37%), Positives = 266/480 (55%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A I +VFK G SH +
Sbjct: 6 FDTITAISTPLG--EGAIGIVRLSGTDAFAIASKVFK----------GKDLATVPSHSLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TREDV+E+ HG +L+ + GA +A+
Sbjct: 54 YGHIIDPATGQVLDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEILQLLIRQGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A A+ + G S L+ R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDVIRAKTDKAMHNAVRQLDGSLSQLINDTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ LV +K +EN L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTELVREKTLQFQALLENLLRTARRGKILREGIATAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVEKIGV
Sbjct: 234 VGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDIVEKIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD+I++ ++A + T +D LL + I+++NK D
Sbjct: 294 ERSKKALEEADLILLVLNASEPLTEQDRNLL--------AVSDMANRIVLLNKTDL---- 341
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E + D + + Q I +E I ++ GL + A + N R
Sbjct: 342 -EEQIEADQLPEDVIRISVLKNQNIDQIEEKINQLFFENAGLVEQDA---TYLSNSRHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEQAVQSLQAVNDGLEMGMPVDLLQVDLTRCWQILGEITGDAAPDELITQLFSQFCLGK 457
>gi|392427886|ref|YP_006468880.1| tRNA modification GTPase trmE [Desulfosporosinus acidiphilus SJ4]
gi|391357849|gb|AFM43548.1| tRNA modification GTPase trmE [Desulfosporosinus acidiphilus SJ4]
Length = 452
Score = 291 bits (744), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 179/472 (37%), Positives = 265/472 (56%), Gaps = 24/472 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI A T++G ++ I+RLSGP + I+G F P K++ W + Y
Sbjct: 4 TIVAPATAMG--EASIHIIRLSGPDSARIIGECFVPKSKER--------WSLQGNFTLYL 53
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
V+DEVL M AP S+T EDV E+ CHG +R+L CL GA LA+PGE
Sbjct: 54 GTFKDGERVLDEVLISKMSAPNSFTGEDVYEINCHGGPFIAQRILNTCLRHGAHLAEPGE 113
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
F+ RAFLNG+LDL QAE + LI++K+ ++AD AL+ + GG S + +R K +E+L I
Sbjct: 114 FSKRAFLNGKLDLVQAEAIIDLITSKTESSADLALSQLSGGLSKQIMDLREKILEILAFI 173
Query: 274 EARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
EA +DF +D++ L+ N + +I + L+ + K+L+ GL I GRPNVGKS
Sbjct: 174 EAGIDFPEDDVESLDRNALNYRIEKAISITNDLLKGSKTGKILREGLLTVIAGRPNVGKS 233
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNA K ERAIVT+I GTTRD I SV V G+ + L+DTAGI E++D VE+IG+ER+
Sbjct: 234 SLLNALLKEERAIVTDIPGTTRDEIRESVNVGGILLQLVDTAGIWESEDTVERIGIERTW 293
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
A AD+II+ + A ++ E+ + + +I+++NKID +NE
Sbjct: 294 AALKKADLIILVIQANVPFSEEELTIFQTY---------AEKVIVLVNKIDL---LNNEI 341
Query: 453 NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEA 512
+ N+ + + QG LE I + V ++ N RQ L + A
Sbjct: 342 LSI-NNIEHWIPFSVLLHQGFDKLEEEIKRRVYQGEVKNYSEPLLSNARQISSLEHSYTA 400
Query: 513 LVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + KSS+ +P D +ID+R A + +++G ++ E +L +IF +FCIGK
Sbjct: 401 LQQAKSSLNSLMPWDIISIDIRQALQYISELTGHNVQESLLEDIFSRFCIGK 452
>gi|262066862|ref|ZP_06026474.1| tRNA modification GTPase TrmE [Fusobacterium periodonticum ATCC
33693]
gi|291379413|gb|EFE86931.1| tRNA modification GTPase TrmE [Fusobacterium periodonticum ATCC
33693]
Length = 455
Score = 291 bits (744), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 172/480 (35%), Positives = 282/480 (58%), Gaps = 34/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T G G + IVR+SG +++I+ ++F+ K KK S ++ +
Sbjct: 3 LDTIAAISTPRG--EGGISIVRMSGQDSLNILEKIFRA---KNKKVSELKNYS-----IN 52
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG ++D ++VDEVL M AP +YTRED+VE+ CHG + +VL+ L+ GA +A+
Sbjct: 53 YGHIIDNE-HIVDEVLVSIMKAPNTYTREDIVEINCHGGFLVTEQVLQVVLKNGARIAEI 111
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V +I K+ + +L ++G + +++ ++L
Sbjct: 112 GEFTKRAFLNGRIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAA 171
Query: 272 EIEARLDF-----DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
I LD+ DD +P NLV D + S ++++ + + + K+++ G++ AI+G+
Sbjct: 172 HINVVLDYPEEGIDDPVPE---NLV-DNLKKASAEIKDLISSYDKGKIIKDGIKTAIIGK 227
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSS+LN+ + +RAIVT I GTTRD+IE + + G+P+ L+DTAGIR TDDIVE I
Sbjct: 228 PNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENI 287
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVE+S+ + AD+I+ + ED + + I ++K +I ++NKID
Sbjct: 288 GVEKSKELINSADLILYVIDTSREIDEEDFRIYDIINTDK--------VIGILNKIDIKK 339
Query: 447 SAS-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCE 504
+++ K+ + + A++ GI +LE I K + + ++ + N R
Sbjct: 340 EIDLSKFPKI----DKWIEISALSKIGIDNLEDQIYKYIMNENVEDSSQKLVITNVRHKS 395
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L +T EAL+ + +I+ LP+D +D++DA +L +++GE SE++L +IF FC+GK
Sbjct: 396 ALEKTNEALLNIIETIDMGLPMDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455
>gi|383755649|ref|YP_005434552.1| putative tRNA modification GTPase MnmE [Selenomonas ruminantium
subsp. lactilytica TAM6421]
gi|381367701|dbj|BAL84529.1| putative tRNA modification GTPase MnmE [Selenomonas ruminantium
subsp. lactilytica TAM6421]
Length = 458
Score = 291 bits (744), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 181/473 (38%), Positives = 269/473 (56%), Gaps = 21/473 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI+AI T+ G G +GI+RLSG A++I ++F+PV ++ S SH YG
Sbjct: 5 TISAIATAQG--EGGIGIIRLSGDKAIEIAAKLFQPVSGRELTSY-------ESHRAVYG 55
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
++D G ++DE + + M AP SYT+EDVVELQCHG + LR+ L + GA A+ GE
Sbjct: 56 RIVDADGRIIDEAIVLLMKAPHSYTKEDVVELQCHGGVMPLRKALALTYDYGARPAEGGE 115
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGRLDLSQA+ V +I+AK+ A + G FS + R + + + +
Sbjct: 116 FTKRAFLNGRLDLSQAQAVMDIITAKTDRTLKMASGHLTGQFSRQIKEWRHEILGQIAHL 175
Query: 274 EARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
EA +DF +DE+ + + V K+ + ++ L TA ++L+ GL AIVG+PNVGKS
Sbjct: 176 EAAIDFPEDEVDDIVMEEVAKKVVEVRNYIQKLLRTAGTGRILREGLMTAIVGKPNVGKS 235
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNA + ERAIVT+I GTTRD IE V GVP+ ++DTAGIR T+D+VE+IGVE+S
Sbjct: 236 SLLNALLQEERAIVTDIPGTTRDSIEEYANVGGVPLRIIDTAGIRATEDVVERIGVEKSR 295
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
+ A +++ ED E+++ + + I+++NK D A + E
Sbjct: 296 RMIDQATLVLALFDGSRPLDHEDEEIISLLAGQEA--------IVLLNKSDLAAVVTAE- 346
Query: 453 NKVGNSFNDHVFTCAVTG-QGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKE 511
++ + V + G+ L AI V ++ A + ++RQ L
Sbjct: 347 -ELSDKAAVPVIEISTKDYSGMDKLTEAIKAKVYGGEVLADEGSFVSDERQANLLRNADR 405
Query: 512 ALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L ++I+ L LDF +IDLR A LG+I+G+ + E+++ IF KFCIGK
Sbjct: 406 HLAAAITTIDAGLGLDFISIDLRSAWETLGEITGDTVGEDIIDEIFSKFCIGK 458
>gi|225848361|ref|YP_002728524.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644654|gb|ACN99704.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 447
Score = 291 bits (744), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 168/464 (36%), Positives = 274/464 (59%), Gaps = 36/464 (7%)
Query: 106 PGAVGIVRLSGPMAVDIVGRVFK-PVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVD 164
P AVGIVR+SG A+ I ++F P + +++K+ +G +LD G+V+D
Sbjct: 15 PSAVGIVRISGEDALKIGKQIFTLPQEIQERKAY-------------FGKILDLDGSVLD 61
Query: 165 EVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRL 224
E L + AP+S+T EDVVE+ HGS +++++ + G LA PGEFT RAFLNG++
Sbjct: 62 EGLFIYFKAPKSFTGEDVVEIYPHGSVPVIKKIIENVITLGGRLANPGEFTYRAFLNGKI 121
Query: 225 DLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMP 284
DL+QAE + LISAK+ A+ AA+ ++G S + S+R + L++ IEA ++F +++
Sbjct: 122 DLTQAEAIADLISAKTEKASKAAVRLLEGKLSEKINSLRETLLNLISLIEAEINFPEDVE 181
Query: 285 PLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERA 344
++ L+++ + + + ++ + + L++ G+++AIVGRPNVGKSSL NA ER+
Sbjct: 182 EIDSQLIVENLLKVKKSIDKLVGSYKKGSLIKEGIKLAIVGRPNVGKSSLFNAMVGYERS 241
Query: 345 IVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMT 404
IV+ GTTRD IE ++ + +P+ LLDTAGIRET + VEK+G+ERS+ AD+I+
Sbjct: 242 IVSSYQGTTRDFIEETLKIKDIPIILLDTAGIRETAEYVEKLGIERSKQKIEEADIILFV 301
Query: 405 VSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVF 464
+ G+T ED ++ + I++ I+VINK D + + K N ++
Sbjct: 302 IDGSQGFTDEDKKIYDEIKNK--------IHIIVINKADLITKPLDIFEKSDNI----IY 349
Query: 465 TCAVTGQGIQDLETAIMKIVGL----HQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSI 520
T +VT QGI+DLE I++I+G+ +I R + + ++ E++ + E + L +
Sbjct: 350 TSSVTFQGIKDLEEKIIEILGITETEDEIIINLRHYTLLKQAIEKIEKVVENIDFLIENK 409
Query: 521 EEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
E +DL++ L +I G +E+VL NIF KFCIGK
Sbjct: 410 E------ILMLDLQEVLNYLEEIVGHITTEDVLGNIFSKFCIGK 447
>gi|379797032|ref|YP_005327033.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356874025|emb|CCE60364.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 459
Score = 291 bits (744), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 173/477 (36%), Positives = 270/477 (56%), Gaps = 24/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT-SHVV 150
TI +I T +G GA+GIVRLSGP AV+I +++K G + SH +
Sbjct: 3 LDTITSISTPMG--EGAIGIVRLSGPQAVEIADKLYK----------GKHLLKDVPSHTI 50
Query: 151 EYGVVLDRHGNVVDEVLAVPML-APRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG ++D V E + V +L AP+++TRED++E+ CHG + + RVL + GA +A
Sbjct: 51 NYGHIIDPDTKEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTHGARIA 110
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+
Sbjct: 111 EPGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEI 170
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ ++++ + Q++ L+T K+++ GL IVG+P
Sbjct: 171 LAQVEVNIDYPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKP 230
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 231 NVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIG 290
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD+I+ ++ + T ED L +++ +I+++NK+D +
Sbjct: 291 VERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKNE--------DVIVIVNKMDLEQN 342
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ + K + T + +GI +LE I + ++ + N R L
Sbjct: 343 INIDEVKEMIGTTPLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLK 402
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++ + + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 403 QARQTIQDAIDAAESGVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459
>gi|450009475|ref|ZP_21828098.1| tRNA modification GTPase TrmE [Streptococcus mutans A19]
gi|450022981|ref|ZP_21830281.1| tRNA modification GTPase TrmE [Streptococcus mutans U138]
gi|449190953|gb|EMB92492.1| tRNA modification GTPase TrmE [Streptococcus mutans A19]
gi|449194069|gb|EMB95435.1| tRNA modification GTPase TrmE [Streptococcus mutans U138]
Length = 455
Score = 291 bits (744), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 171/476 (35%), Positives = 272/476 (57%), Gaps = 29/476 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVR+SG A+ I+ ++FK G SH +
Sbjct: 6 FDTITAIATPLG--EGAIGIVRISGSKALAIIKKIFK----------GKNLDDVPSHTIN 53
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ +G ++DEV+ M AP+++TREDV+E+ HG +L+ L +GA +A P
Sbjct: 54 YGHIVE-NGAIIDEVMVSVMRAPKTFTREDVIEINTHGGVAVTNEILQLVLRSGARMADP 112
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A+ + G S+L+ + R + + L
Sbjct: 113 GEFTKRAFLNGRVDLAQAEAVMDLIRAKTDKAMAVAVQQLDGSLSNLINNTRQEILNTLA 172
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + L+ +K + N L+TA K+L+ GL AI+GRPNV
Sbjct: 173 QVEVNIDYPEYDDVEEMTTALMREKTQEFETLLTNLLKTARRGKILREGLSTAIIGRPNV 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGVE
Sbjct: 233 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVE 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL Q++ + ++++NK D
Sbjct: 293 RSKKALEEADLVLLVLNSAEKLTDQDRTLLEISQNSNR--------LILLNKTDLP---- 340
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLH-QIPAGGRRWAVNQRQCEQLMR 508
E + + + + Q I +E I ++ + I + N R + +
Sbjct: 341 -EQIETDQLPENCIKISVIKNQNIDVIEERINELFFDNASIVEKDATYLSNARHISLIEK 399
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 400 ALKSLQAVNDGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 455
>gi|424769529|ref|ZP_18196755.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CM05]
gi|402348174|gb|EJU83169.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CM05]
gi|408424536|emb|CCJ11947.1| tRNA modification GTPase MnmE [Staphylococcus aureus subsp. aureus
ST228]
gi|408426525|emb|CCJ13912.1| tRNA modification GTPase MnmE [Staphylococcus aureus subsp. aureus
ST228]
gi|408428513|emb|CCJ15876.1| tRNA modification GTPase MnmE [Staphylococcus aureus subsp. aureus
ST228]
gi|408430502|emb|CCJ27667.1| tRNA modification GTPase MnmE [Staphylococcus aureus subsp. aureus
ST228]
gi|408432489|emb|CCJ19804.1| tRNA modification GTPase MnmE [Staphylococcus aureus subsp. aureus
ST228]
gi|408434483|emb|CCJ21768.1| tRNA modification GTPase MnmE [Staphylococcus aureus subsp. aureus
ST228]
gi|408436476|emb|CCJ23736.1| tRNA modification GTPase MnmE [Staphylococcus aureus subsp. aureus
ST228]
gi|408438459|emb|CCJ25702.1| tRNA modification GTPase MnmE [Staphylococcus aureus subsp. aureus
ST228]
Length = 459
Score = 291 bits (744), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 175/479 (36%), Positives = 271/479 (56%), Gaps = 28/479 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT-SHVV 150
TI +I T +G GA+GIVRLSGP AV+I +++K G SH +
Sbjct: 3 LDTITSISTPMG--EGAIGIVRLSGPQAVEIADKLYK----------GKHLLNDVPSHTI 50
Query: 151 EYGVVLDRHGNVVDEVLAVPML-APRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG ++D V E + V +L AP+++TRED++E+ CHG + + RVL + GA +A
Sbjct: 51 NYGHIIDPESKEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTYGARMA 110
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+
Sbjct: 111 EPGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEI 170
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ ++++ + Q+ L+T K+++ GL IVG+P
Sbjct: 171 LAQVEVNIDYPEYDDVEDATTEFLLEQSKEIKQEFNRLLDTGAQGKIMREGLSTVIVGKP 230
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 231 NVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIG 290
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD+I+ ++ + T ED L +++ +I+++NK+D +
Sbjct: 291 VERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKNE--------DVIVIVNKMDLEQN 342
Query: 448 ASNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+ N+V + D + T + +GI +LE I + ++ + N R
Sbjct: 343 I--DINEVKDMIGDTPLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISL 400
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + ++ + + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 401 LKQARQTIQDAIDAAESGVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459
>gi|387879445|ref|YP_006309748.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis FW213]
gi|386792898|gb|AFJ25933.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis FW213]
Length = 466
Score = 291 bits (744), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 174/480 (36%), Positives = 272/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G SH +
Sbjct: 15 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLASVASHTLN 62
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N ++DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 63 YGHIVDPDKNEILDEVMIGAMRSPKTFTREDIIEINTHGGIAVTNEILQLVIREGARLAE 122
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 123 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 182
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ ++ +K + N L+TA K+L+ G+ AI+GRPN
Sbjct: 183 AQVEVNIDYPEYDDVEEATTEIIREKTSEFEALLTNLLKTARRGKILREGISTAIIGRPN 242
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 243 VGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAGIRETEDIVEQIGV 302
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q + + I+++NK+D
Sbjct: 303 ERSKKALKEADLVLLVLNASEPLTDQDRQLLEISQDSNR--------IILLNKVDLP--- 351
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E ++ DH+ + Q I +E I + GL + A + N R
Sbjct: 352 --EKIEIDQLPEDHIKISVLKNQNIDQIEDRINALFFENAGLVEQDA---TYLSNARHIS 406
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + + +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 407 LIEKAVESLQAVNEGLALGMPVDLLQVDLTLTWEILGEITGDAAPDELITQLFSQFCLGK 466
>gi|336420164|ref|ZP_08600406.1| tRNA modification GTPase TrmE [Fusobacterium sp. 11_3_2]
gi|336162126|gb|EGN65115.1| tRNA modification GTPase TrmE [Fusobacterium sp. 11_3_2]
Length = 455
Score = 290 bits (743), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 171/480 (35%), Positives = 281/480 (58%), Gaps = 34/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T G G + IVR+SG +++I+ ++F+P K KK+S ++ +
Sbjct: 3 LDTIAAISTPRG--EGGISIVRMSGQDSLNILEKIFRP---KNKKASELKNYS-----IN 52
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG ++D ++VDEVL M AP +YTRED+VE+ CHG + +VL L+ GA +A+
Sbjct: 53 YGHIIDNE-HIVDEVLVSIMKAPNTYTREDIVEINCHGGFLVTEKVLEVVLKNGARIAEI 111
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V +I K+ + +L ++G + ++ ++L
Sbjct: 112 GEFTKRAFLNGRIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIAIIKKSVLDLAA 171
Query: 272 EIEARLDF-----DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
I LD+ DD +P NLV + + S ++++ + + + K+++ G++ AI+G+
Sbjct: 172 HINVVLDYPEEGIDDPVPE---NLV-ENLKKASAEIKDLVSSYDKGKIIKDGIKTAIIGK 227
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSS+LN+ + +RAIVT I GTTRD+IE + + G+P+ L+DTAGIR TDD++E I
Sbjct: 228 PNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDVIENI 287
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVE+S+ + AD+I+ + ED + + I ++K +I ++NKID
Sbjct: 288 GVEKSKELINSADLILYVIDISREIDEEDFRIYDIINTDK--------VIGILNKIDIKK 339
Query: 447 SAS-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCE 504
+++ K+ V A++ GI +LE I K + I ++ + N R
Sbjct: 340 DIDLSKFPKI----EKWVEISALSKIGIDNLENEIYKFIMNENIEDSSQKLVITNVRHKS 395
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L +T EAL+ + +I++ P+D +D++DA +L +++GE SE++L +IF FC+GK
Sbjct: 396 ALEKTNEALLNIIETIDKGFPMDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455
>gi|123965453|ref|YP_001010534.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
9515]
gi|166234807|sp|A2BUG6.1|MNME_PROM5 RecName: Full=tRNA modification GTPase MnmE
gi|123199819|gb|ABM71427.1| putative thiophen / furan oxidation protein [Prochlorococcus
marinus str. MIT 9515]
Length = 461
Score = 290 bits (743), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 169/477 (35%), Positives = 270/477 (56%), Gaps = 25/477 (5%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
T TIAAI ++I G + ++R++G A++ + + K +W SH V
Sbjct: 7 TEDTIAAIASAISLGKGGIAVIRVTGEEAINSCKNIVETKSKY--------AWE--SHRV 56
Query: 151 EYGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAG--AT 207
+G V D N +DE+L M +P S+T EDVVEL CHG + + +V+ L
Sbjct: 57 FHGYVKDNLENKYIDEILISVMHSPNSFTGEDVVELHCHGGVIVVNKVMDTLLSNNNKVR 116
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
+A PGEF+ RAFLNG++DL+QAE++ +LI+AK++ +A+ A G++G + ++ I
Sbjct: 117 IANPGEFSQRAFLNGKIDLTQAESINQLINAKNLKSAEIAFNGVKGEIKKKIDVIKNDLI 176
Query: 268 ELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
E L+EIEAR+DF+++ N + I + + +E +E + +G+ IA++G+
Sbjct: 177 EQLSEIEARVDFEEDFSDFNYHDFSRSIKNIKEKIEILIENTKRGASIHNGISIALIGKT 236
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN SK E+AIVT I GTTRD+IE ++T+ +P+ L+DTAGIR+TD+ +E IG
Sbjct: 237 NVGKSSLLNLLSKKEKAIVTNIPGTTRDMIEVNLTIKDIPIKLVDTAGIRDTDEYIENIG 296
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
+E++ + +D II S DG+ +D E++++I K T ++ NK D S
Sbjct: 297 IEKTFEMIQKSDYIIYLYSLEDGFNKDDEEIISKIPREKLIT-------ILGNKKDLIDS 349
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
N+ +D V +G +DL I+K G + +N+RQ L
Sbjct: 350 KKNDQKTFS---SDIVLMSIKNNEGEKDLVDKIVKKCGSKEFE--NIDIFLNERQISNLR 404
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ L I +LP D +I++RD L +I+G++++E++L+NIF KFCIGK
Sbjct: 405 DCLKNLNDTDPIIANQLPFDLLSIEVRDGIKNLSRITGQELTEDLLNNIFSKFCIGK 461
>gi|384548921|ref|YP_005738174.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
ED133]
gi|387781646|ref|YP_005756444.1| tRNA modification GTPase [Staphylococcus aureus subsp. aureus
LGA251]
gi|417905292|ref|ZP_12549104.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21269]
gi|298695968|gb|ADI99190.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
ED133]
gi|341844157|gb|EGS85376.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21269]
gi|344178748|emb|CCC89240.1| probable tRNA modification GTPase [Staphylococcus aureus subsp.
aureus LGA251]
Length = 459
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 176/479 (36%), Positives = 273/479 (56%), Gaps = 28/479 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT-SHVV 150
TI +I T +G GA+GIVRLSGP AV+I +++K G SH +
Sbjct: 3 LDTITSISTPMG--EGAIGIVRLSGPQAVEIADKLYK----------GKHLLNDVPSHTI 50
Query: 151 EYGVVLDRHGNVVDEVLAVPML-APRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG ++D V E + V +L AP+++TRED++E+ CHG + + RVL + GA +A
Sbjct: 51 NYGHIIDPESKEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTYGARMA 110
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+
Sbjct: 111 EPGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEI 170
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ ++++ + Q++ L+T K+++ GL IVG+P
Sbjct: 171 LAQVEVNIDYPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKP 230
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 231 NVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIG 290
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD+I+ ++ + T ED L +++ +I+++NK+D +
Sbjct: 291 VERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKNE--------DVIVIVNKMDLEQN 342
Query: 448 AS-NEW-NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
NE + +GN+ + T + +GI +LE I + ++ + N R
Sbjct: 343 IDINEVKDMIGNT--PLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISL 400
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + ++ + + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 401 LKQARQTIQDAIDAAESGVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459
>gi|157149742|ref|YP_001450550.1| tRNA modification GTPase TrmE [Streptococcus gordonii str. Challis
substr. CH1]
gi|189036214|sp|A8AXP0.1|MNME_STRGC RecName: Full=tRNA modification GTPase MnmE
gi|157074536|gb|ABV09219.1| tRNA modification GTPase TrmE [Streptococcus gordonii str. Challis
substr. CH1]
Length = 457
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 170/477 (35%), Positives = 275/477 (57%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++ V+DEV+ M +P+++TRED++E+ HG +L+ + GA +A+
Sbjct: 54 YGHIVDPQNQEVLDEVMIGAMRSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S+L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + + + L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTQLMREKTAEFEELLTSLLNTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q + + I+++NK D
Sbjct: 294 ERSKKALQEADLVLLVLNASEPLTDQDKQLLEISQDSNR--------IVLLNKTDL---- 341
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
E ++ D + + Q I +E I ++ + I + N R +
Sbjct: 342 -EEKIELDQLPTDIIKISVLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIE 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 401 KALESLQAVNQGLEMGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|239624142|ref|ZP_04667173.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239520528|gb|EEQ60394.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 459
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 172/477 (36%), Positives = 277/477 (58%), Gaps = 28/477 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T +G +GIVR+SG A ++ ++++ ++ S + SH V YG
Sbjct: 5 TIAAIATGMGNS--GIGIVRISGDEAFTVIDKLYRNKDGRQVPIS-----QARSHTVHYG 57
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ D V DE L + M P SYT ED VE+ CHG + +R++L A + AGA A+PGE
Sbjct: 58 FIYDGDEKV-DEALVLIMKGPHSYTAEDTVEIDCHGGILMVRKILEAVIHAGARTAEPGE 116
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGR+DLSQAE V +I+A + A ++++ + G S + +R++ + + I
Sbjct: 117 FTKRAFLNGRIDLSQAEAVADVINATNEYALKSSVSQLSGSVSKRIKELRSQILYQIAFI 176
Query: 274 EARLDFDDEMPPLNLNL------VMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
E+ LD P +++L ++ ++ M ++V+ L +A+ +++ G++ I+G+P
Sbjct: 177 ESALD-----DPEHISLDGYDEELLARLDPMVEEVKRLLASADDGRVMTEGVKTVILGKP 231
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
N GKSSL+N ERAIVTEIAGTTRD +E + + G+ + ++DTAGIR+T+D+VEKIG
Sbjct: 232 NAGKSSLMNVLLGEERAIVTEIAGTTRDTLEEHIYLQGISLNVVDTAGIRDTEDVVEKIG 291
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
V+R+ A AD+II V D E+++ I+ K I+++NK D
Sbjct: 292 VDRARRAAGDADLIIFVVDGSRPLDESDREIMDFIRGRKS--------IILLNKSDLELV 343
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
E + G S + A QGI++LE I ++ ++ + + N R E L
Sbjct: 344 VGKEELE-GMSGQKVIPVSAKEEQGIEELEQEIKRLFYHGELKFNDQVYITNVRHKEALE 402
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ +L+ +K SIE+ +P DF++IDL +A LG I+GE + +++++ IF +FC+GK
Sbjct: 403 QALRSLLMVKGSIEDRMPEDFYSIDLMNAYEQLGLITGEAVDDDLVNEIFARFCMGK 459
>gi|421238776|ref|ZP_15695343.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2071247]
gi|395602039|gb|EJG62184.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 2071247]
Length = 457
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 177/480 (36%), Positives = 273/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLNKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIIDPLTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDFDD--EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ + ++ +V +K Q + L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYYDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T++D +LL Q T I+++NK D +
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQ--------DTNRIILLNKTDLPETI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +K+ + + Q I +E I + GL + A + N R
Sbjct: 346 --ETSKLPEEV---IRISVLKNQNIDKIEERINNLFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|374605466|ref|ZP_09678393.1| tRNA modification GTPase TrmE [Paenibacillus dendritiformis C454]
gi|374388917|gb|EHQ60312.1| tRNA modification GTPase TrmE [Paenibacillus dendritiformis C454]
Length = 458
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 178/477 (37%), Positives = 274/477 (57%), Gaps = 25/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
+ TIAA+ T +G G + ++R+SG A+ V ++F K + + H +
Sbjct: 3 YDTIAAVSTPLG--EGGIAVIRVSGEGALSEVEKLFHSKVKLTEADT---------HTIH 51
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V+EVL M APRS+T EDVVE+ HG + +R+V+ LE A+
Sbjct: 52 YGHIVDPKTGERVEEVLVNVMRAPRSFTTEDVVEINTHGGMISIRKVMDLLLEQEIRPAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI +KS A A+ +QG S+ + ++R IE L
Sbjct: 112 PGEFTKRAFLNGRIDLSQAEAVIDLIRSKSDRAFSVAMKQVQGHLSNKINALRHTLIETL 171
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IE +D+ + ++ L + +K + +++E L+TA+ K+L+ G+ AIVGRPNV
Sbjct: 172 AHIEVNIDYPEHDVEELTSAFIQEKCGQVKKEIEQLLKTASEGKILREGIVTAIVGRPNV 231
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ++ +AIVT+I GTTRDVIE VT+ G+P+ LLDTAGIRET DIVE++GVE
Sbjct: 232 GKSSLLNTLARDNKAIVTDIPGTTRDVIEEFVTINGIPLRLLDTAGIRETTDIVERLGVE 291
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS + L AD+I+ V+ + ++ E + + +I+++NK+D
Sbjct: 292 RSRSALLEADLILFVVNNNEPLHEDEREWMKEFVGRQ--------VIVIVNKMDLPQHI- 342
Query: 450 NEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ +++ N+F V A +G+ LE AI + I +G + N R L
Sbjct: 343 -DISELENTFGADAIVRMSAKEQEGVDALEQAISTLFFSGGIESGDLTYVSNVRHIALLK 401
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ +AL + + +P+D ID+R A LG+I G+ + + ++ IF +FC+GK
Sbjct: 402 KALQALDDAIDASRQGIPIDMIQIDVRSAWEQLGEIIGDAVGDSLIDQIFSQFCLGK 458
>gi|302388592|ref|YP_003824414.1| tRNA modification GTPase TrmE [Clostridium saccharolyticum WM1]
gi|302199220|gb|ADL06791.1| tRNA modification GTPase TrmE [Clostridium saccharolyticum WM1]
Length = 459
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 175/475 (36%), Positives = 275/475 (57%), Gaps = 20/475 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
+TIAAI T++ +GIVR+SG + I+ R+FK +KK S P SH +
Sbjct: 3 MNTIAAIATAM--SSSGIGIVRISGEESFQIIDRIFKAKGNGEKKLS----LEP-SHTIH 55
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG + D ++DEVL + M PRSYT ED VE+ CHG + +R+L L+ GA A+P
Sbjct: 56 YGCIYD-GDEIIDEVLVLIMKGPRSYTAEDTVEIDCHGGVLVTKRILETVLKYGARPAEP 114
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DLSQAE V +I AK+ A ++++ ++G S + +R K I +
Sbjct: 115 GEFTKRAFLNGRVDLSQAEAVIDVIHAKNNYALKSSVSQLEGAVSRKIKDMREKIIYQIA 174
Query: 272 EIEARLDFDDEMPPLN--LNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IE+ LD D E L+ L++ + + +++ +++++ ++L G++ I+G+PN
Sbjct: 175 FIESALD-DPEHISLDGYQELLLKTLEPIKEELNLLIKSSDNGRVLSEGIETVILGKPNA 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ERAIVT+IAGTTRD ++ + + + + ++DTAGIR+T D+VEKIGVE
Sbjct: 234 GKSSLLNVLVGEERAIVTDIAGTTRDTLKEQIRLEDLSLNIIDTAGIRDTQDVVEKIGVE 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
++ + A AD+II V D E+L I+S K ++++NK D P +
Sbjct: 294 KARSAAQEADLIIYVVDGSCPLDENDEEILTFIESRKA--------VVLLNKTDLIPVVT 345
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+ K+ + + + A GI +LE I + +I + + N R L+
Sbjct: 346 EDMLKM-RTRHQVIPISAKERLGIGNLENEIKAMFYHGEIDFNDQVYITNVRHKNALLEA 404
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L ++ S+ E+P DF++IDL DA LG I GE + +++++ IF KFC+GK
Sbjct: 405 LKSLSMVEQSVRNEMPEDFYSIDLMDAYEQLGTILGESVEDDLVNEIFRKFCMGK 459
>gi|374337806|ref|YP_005094514.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Streptococcus
macedonicus ACA-DC 198]
gi|372283914|emb|CCF02133.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Streptococcus
macedonicus ACA-DC 198]
Length = 457
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 178/478 (37%), Positives = 270/478 (56%), Gaps = 31/478 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG A+ I +V+ G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTEALAIAQKVY----------HGKDLNKVASHTIN 53
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + V+DEV+ MLAP+++T E+VVE+ HG +L+ L GA LA+
Sbjct: 54 YGHIVDPDTDEVLDEVMVSVMLAPKTFTCENVVEINTHGGVSVTNEILQLVLRQGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSQLINDTRQEILNTL 173
Query: 271 TEIEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + +EN L TA K+L+ GL AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTALIREKTQEFQELLENLLRTAKRGKILREGLSTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGV
Sbjct: 234 VGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDVVEKIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ +++ + T +D LL + + + I+++NK D
Sbjct: 294 ERSKKALEEADLVLLVLNSSEPLTDQDRALLELSKDSNR--------IILLNKTDLPEKI 345
Query: 449 SNEWNKVGNSFNDHVFTCAV-TGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQL 506
+ D V +V Q I +E I ++ + I + N R +
Sbjct: 346 E------ADQLPDDVIRISVLKNQNIDVIEERINQLFFDNAGIVEKDATYLSNARHISLI 399
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++L + +E +P+D IDL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 400 EKAVQSLQAVNEGLELGIPVDLLQIDLTRCWEILGEITGDAAPDELITKLFSQFCLGK 457
>gi|449955759|ref|ZP_21809303.1| tRNA modification GTPase TrmE [Streptococcus mutans 4VF1]
gi|450141042|ref|ZP_21873051.1| tRNA modification GTPase TrmE [Streptococcus mutans NLML1]
gi|450161740|ref|ZP_21880649.1| tRNA modification GTPase TrmE [Streptococcus mutans 66-2A]
gi|449170948|gb|EMB73634.1| tRNA modification GTPase TrmE [Streptococcus mutans 4VF1]
gi|449231268|gb|EMC30470.1| tRNA modification GTPase TrmE [Streptococcus mutans NLML1]
gi|449238227|gb|EMC37002.1| tRNA modification GTPase TrmE [Streptococcus mutans 66-2A]
Length = 455
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 171/476 (35%), Positives = 272/476 (57%), Gaps = 29/476 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVR+SG A+ I+ ++FK G SH +
Sbjct: 6 FDTITAIATPLG--EGAIGIVRISGSKALAIIKKIFK----------GKNLDDVPSHTIN 53
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ +G ++DEV+ M AP+++TREDV+E+ HG +L+ L +GA +A P
Sbjct: 54 YGHIVE-NGAIIDEVMVSVMRAPKTFTREDVIEINTHGGVAVTNEILQLVLRSGARMADP 112
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A+ + G S+L+ + R + + L
Sbjct: 113 GEFTKRAFLNGRVDLAQAEAVMDLIRAKTDKAMAVAVQQLDGSLSNLINNTRQEILNTLA 172
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + L+ +K + N L+TA K+L+ GL AI+GRPNV
Sbjct: 173 QVEVNIDYPEYDDVEEMTTALMREKTQEFETLLTNLLKTARRGKILREGLSTAIIGRPNV 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VEKIGVE
Sbjct: 233 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVE 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL Q++ + ++++NK D
Sbjct: 293 RSKKALEEADLVLLVLNSAEKLTDQDRTLLEISQNSNR--------LILLNKTDLP---- 340
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLH-QIPAGGRRWAVNQRQCEQLMR 508
E + + + + Q I +E I ++ + I + N R + +
Sbjct: 341 -EQIETDQLPENCIKISVIKNQNIDVIEERINELFFDNAAIVEKDATYLSNARHISLIEK 399
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 400 ALKSLQAVNDGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 455
>gi|160941470|ref|ZP_02088805.1| hypothetical protein CLOBOL_06361 [Clostridium bolteae ATCC
BAA-613]
gi|158435616|gb|EDP13383.1| hypothetical protein CLOBOL_06361 [Clostridium bolteae ATCC
BAA-613]
Length = 459
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 181/479 (37%), Positives = 273/479 (56%), Gaps = 32/479 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T G +GIVR+SG A ++ +F+ K ++ + S S SH V YG
Sbjct: 5 TIAAIAT--GMSNSGIGIVRISGEQAFSVIDSIFRNRKGERVRLSLS-----QSHTVHYG 57
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ D V DE L + M P SYT ED VE+ CHG + +RR+L L AGA A+PGE
Sbjct: 58 YIYDGDEKV-DEALVIIMKGPHSYTAEDTVEIDCHGGVLMVRRILETVLHAGARTAEPGE 116
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGRLDLSQAE V +I A + A ++++ + G S+ + +R++ + + I
Sbjct: 117 FTKRAFLNGRLDLSQAEAVADVIHATNEYALKSSVSQLSGSVSAKIKELRSRILYQIAFI 176
Query: 274 EARLDFDDEMPPLNLNL------VMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
E+ LD P +++L +MD + M +V L +A+ +++ G++ I+G+P
Sbjct: 177 ESALD-----DPEHISLDGYGSRLMDDLVPMIGEVRKLLLSADDGRVMSEGVKTVILGKP 231
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
N GKSSL+N ERAIVTEIAGTTRD +E + + G+ + ++DTAGIR+T+D+VEKIG
Sbjct: 232 NAGKSSLMNVLLGEERAIVTEIAGTTRDTLEEHIYLQGISLNVVDTAGIRDTEDVVEKIG 291
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDC-AP 446
V+R+ A AD+II V D E++ I+ K I+++NK D
Sbjct: 292 VDRAMKAARDADLIIYVVDGSRPLDESDREIIEFIRDRKT--------IVLLNKSDLDLE 343
Query: 447 SASNEWNKV-GNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+ E ++ G+ + A QGI+ LE I K+ + + + N R E
Sbjct: 344 VGTAELEQICGHKV---LPVSAKEEQGIELLEQEIKKLFYHGDLSFNDQVYITNARHKEA 400
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + E+L+ +K S+E+ +P DF++IDL +A LG I GE + ++V++ IF KFC+GK
Sbjct: 401 LEQCLESLLMVKGSVEDSMPEDFYSIDLMNAYEQLGFIIGEAVDDDVVNEIFAKFCMGK 459
>gi|225386360|ref|ZP_03756124.1| hypothetical protein CLOSTASPAR_00104 [Clostridium asparagiforme
DSM 15981]
gi|225047542|gb|EEG57788.1| hypothetical protein CLOSTASPAR_00104 [Clostridium asparagiforme
DSM 15981]
Length = 470
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 185/494 (37%), Positives = 274/494 (55%), Gaps = 42/494 (8%)
Query: 87 EKAGTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVF-----KPVKKKKKKSSGSG 141
EK TIAAI T G +GIVR+SG A ++ R+F KPVK +++S
Sbjct: 3 EKIMRTDTIAAIAT--GMSNSGIGIVRISGGEAFAVIDRIFRNKAGKPVKLSQERS---- 56
Query: 142 SWRPTSHVVEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRAC 201
H V YG + D VDE L + M PRS+T ED VE+ CHG + ++++L
Sbjct: 57 ------HTVHYGFIYDGD-ERVDEALVILMRGPRSFTAEDTVEIDCHGGVLMVKKILETV 109
Query: 202 LEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTS 261
+ GA A+PGEFT RAFLNGR+DLSQAE V +I+AK+ A ++ + G S +
Sbjct: 110 IRYGARTAEPGEFTKRAFLNGRIDLSQAEAVADVINAKNDYALRNSVGQLGGSVSKKIKE 169
Query: 262 VRAKCIELLTEIEARLDFDDEMPPLN--LNLVMDKIHAMSQDVENALETANYDKLLQSGL 319
+RA + + IE+ LD D E L+ + +I M++ VE + +A+ +++ G+
Sbjct: 170 LRAGILYQIAFIESALD-DPEHISLDGFAQSLRAEIEEMTEQVEKLIRSADDGRVMTEGV 228
Query: 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRET 379
+ I+G+PN GKSSL+N +RAIVTEIAGTTRD +E + + G+ + ++DTAGIR+T
Sbjct: 229 RTVILGKPNAGKSSLMNVLIGEDRAIVTEIAGTTRDTLEEHIYLQGISLNVVDTAGIRDT 288
Query: 380 DDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVI 439
+D+VEKIGV+R+ A AD++I V D E+++ I+SN S E I+++
Sbjct: 289 EDVVEKIGVDRAMKAAREADLLIYVVDGSTPLDENDREIMDFIRSN--SGEGGKKAIVLL 346
Query: 440 NKID---CAPSASNEWNKVGNSFNDHVFTCAVT------GQGIQDLETAIMKIVGLHQIP 490
NK D C + E C V QGI+ LE I ++ +
Sbjct: 347 NKTDLETCVDAGVLERET----------GCVVIPISAKEEQGIEALEQEIKQMFYHGTLS 396
Query: 491 AGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISE 550
+ + R E L R +E+L +K S+E+ LP DF++IDL DA LG I GE + +
Sbjct: 397 FNDEVYITSVRHKEALGRARESLEMVKCSVEQGLPEDFYSIDLMDAYEQLGLIIGEAVDD 456
Query: 551 EVLSNIFGKFCIGK 564
+V++ IF KFC+GK
Sbjct: 457 DVVNEIFAKFCMGK 470
>gi|282902629|ref|ZP_06310522.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
C160]
gi|282597088|gb|EFC02047.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
C160]
Length = 459
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 174/479 (36%), Positives = 271/479 (56%), Gaps = 28/479 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTS-HVV 150
TI +I T +G GA+GIVRLSGP AV+I +++K G H +
Sbjct: 3 LDTITSISTPMG--EGAIGIVRLSGPQAVEIADKLYK----------GKHLLNDVPPHTI 50
Query: 151 EYGVVLDRHGNVVDEVLAVPML-APRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG ++D V E + V +L AP+++TRED++E+ CHG + + RVL + GA +A
Sbjct: 51 NYGHIIDPESKEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTYGARMA 110
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+
Sbjct: 111 EPGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEI 170
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ ++++ + Q++ L+T K+++ GL IVG+P
Sbjct: 171 LAQVEVNIDYPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKP 230
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 231 NVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIG 290
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD+I+ ++ + T ED L +++ +I+++NK+D +
Sbjct: 291 VERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKNED--------VIVIVNKMDLEQN 342
Query: 448 ASNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+ N+V + D + T + +GI +LE I + ++ + N R
Sbjct: 343 I--DINEVKDMIGDTPLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISL 400
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + ++ + + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 401 LKQARQTIQDAIDAAESGVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459
>gi|319947147|ref|ZP_08021381.1| thiophene and furan oxidation protein ThdF [Streptococcus australis
ATCC 700641]
gi|417920272|ref|ZP_12563784.1| tRNA modification GTPase TrmE [Streptococcus australis ATCC 700641]
gi|319747195|gb|EFV99454.1| thiophene and furan oxidation protein ThdF [Streptococcus australis
ATCC 700641]
gi|342829923|gb|EGU64264.1| tRNA modification GTPase TrmE [Streptococcus australis ATCC 700641]
Length = 457
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 173/480 (36%), Positives = 271/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFKIAQKIFK----------GKDLTSVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPDKDEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQLVIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ ++ +K + N L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTEIIREKTTEFEALLTNLLKTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 234 VGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAGIRETEDIVERIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD++++ ++A + T +D +LL Q + + I+++NK+D
Sbjct: 294 ERSRKALKEADLVLLVLNASEPLTDQDRQLLEISQDSNR--------IILLNKVDLPQQI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +++ DH+ + Q I +E I + GL + A + N R
Sbjct: 346 --ELDEIP---ADHIKISVLKNQNINQIEDRINALFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + + +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLAMGMPVDLLQVDLTRTWEILGEITGDATPDELITQLFSQFCLGK 457
>gi|422826418|ref|ZP_16874597.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK678]
gi|324994536|gb|EGC26449.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK678]
Length = 457
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 169/477 (35%), Positives = 273/477 (57%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKNLSKVESHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++ ++DEV+ M +P+++TRED++E+ HG +L+ + GA +A+
Sbjct: 54 YGHIVDPQNQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S+L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTQLMREKTAEFETLLSNLLNTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q + + I+++NK D
Sbjct: 294 ERSKKALQEADLVLLVLNASEPLTDQDRQLLEISQDSNR--------IVLLNKTDL---- 341
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
E ++ D + + Q I +E I ++ + I + N R +
Sbjct: 342 -EEKIELDQLPTDAIKISVLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIE 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 401 KALESLQAVNQGLEMGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|304439121|ref|ZP_07399040.1| tRNA modification GTPase TrmE [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304372480|gb|EFM26067.1| tRNA modification GTPase TrmE [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 457
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 175/477 (36%), Positives = 275/477 (57%), Gaps = 29/477 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+ G +GIVR+SG +V+I +VF+ + +K + ++ YG
Sbjct: 4 TIAAISTATG--EAGIGIVRMSGEDSVEIADKVFRHIGQKN-------LTEIKNRMMSYG 54
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
++D +G V+DEVL V M+AP +YTRE++VE+ HG + +RRVL L+ GA +A+ GE
Sbjct: 55 HIIDENGKVIDEVLIVKMMAPNTYTRENMVEIYTHGGIISVRRVLNLLLDNGARIAEAGE 114
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGRLDLSQAE V +I AK+ + D ++ ++G + ++T + + +++ I
Sbjct: 115 FTKRAFLNGRLDLSQAEAVIDIIKAKTDESFDQSIKQLEGSLTGIITEISDEVTKMMGII 174
Query: 274 EARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
A +DF +D++ +++ + + +++ +E +N +LL+ G+ I+G+PNVGKS
Sbjct: 175 IANIDFPEDDVEEYQYETLLNDANKVKENINTLIEGSNRGRLLRDGINTVILGKPNVGKS 234
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNA + E+AIVT+I GTTRD+IE V + G+ + + DTAGIRET+D VE IGV R+
Sbjct: 235 SLLNAMLRYEKAIVTDIPGTTRDIIEDYVNLDGILLKITDTAGIRETEDKVEAIGVSRAV 294
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
GAD+II + + D E+L ++ K I+++NK D + N
Sbjct: 295 KSIEGADLIIAIFDGSEKFDENDEEILKLLEGKKS--------IVLVNKADL--ESKNSE 344
Query: 453 NKVGNSFNDHVFTCAVTGQG-IQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKE 511
+++ + F + + +G I D+E I + + A + N R L KE
Sbjct: 345 DELKSFFGNRDYMNVSIKKGTILDIENKIKDMFFSGNLKAKEEFYINNLRHVRAL---KE 401
Query: 512 ALVRLKSSIE----EELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
A + S+IE E LD +DLR A LG I+GE +E++L +F +FCIGK
Sbjct: 402 ATKFIDSAIEGLETREF-LDCIEVDLRGALDELGNITGETTTEDILDKVFSEFCIGK 457
>gi|225377579|ref|ZP_03754800.1| hypothetical protein ROSEINA2194_03229 [Roseburia inulinivorans DSM
16841]
gi|225210555|gb|EEG92909.1| hypothetical protein ROSEINA2194_03229 [Roseburia inulinivorans DSM
16841]
Length = 457
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 174/476 (36%), Positives = 273/476 (57%), Gaps = 28/476 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++ +GIVR+SG AV I R+F+ +KK + PT H + YG
Sbjct: 5 TIAAIATAM--TSSGIGIVRISGDEAVSITDRIFEMKNQKKLED------MPT-HTIHYG 55
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ D V+DEV+ V M P+SYTRED VE+ CHG ++R+L ++ GA A+PGE
Sbjct: 56 HIHDG-DEVIDEVMVVLMRGPKSYTREDTVEIDCHGGVYVMKRILETVIKYGARPAEPGE 114
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGR+DLSQAE+V +I++K+ A ++L+ + G S + +R + + I
Sbjct: 115 FTKRAFLNGRIDLSQAESVIDVINSKNEFALKSSLSQLSGSVSEKIKEIRGNVLHEIAFI 174
Query: 274 EARLDFDDEMPPLNLNLVMDKIHAMSQDVENALET--ANYD--KLLQSGLQIAIVGRPNV 329
E+ LD + ++L+ +K+ + DV ++ AN D K+L+ G+ IVG+PN
Sbjct: 175 ESALD---DPEHISLDGYPEKLSGIVSDVIKKIDKLLANSDNGKMLKEGISTVIVGKPNA 231
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN E+AIVT+IAGTTRDV+E + + G+ + ++DTAGIR+T+D+VEKIGVE
Sbjct: 232 GKSSLLNFLVGEEKAIVTDIAGTTRDVLEEQINLNGILLNIIDTAGIRDTEDVVEKIGVE 291
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
R++ AD++I V D E++ ++ I+++NK D +P +
Sbjct: 292 RAKKYLNNADLVIYVVDTSTALDENDHEIMELLKDRHA--------IVLLNKSDLSPVTT 343
Query: 450 NEWNKVGNSFNDHVFTCAVTGQ-GIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E + + + + + Q G+ DLE I ++ ++ + N R L
Sbjct: 344 VE--DIRKHLDKKMISISAKEQTGMDDLEETIKEMFFSGEVTFNDEVYITNIRHKTSLQE 401
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+L + SI +++P DF++IDL +A LG I GE + +++++ IF KFC+GK
Sbjct: 402 ALRSLHLVLQSIADDMPEDFYSIDLMNAYEELGNIIGESVEDDLVNEIFSKFCMGK 457
>gi|397690000|ref|YP_006527254.1| tRNA modification gtpase trme [Melioribacter roseus P3M]
gi|395811492|gb|AFN74241.1| tRNA modification gtpase trme [Melioribacter roseus P3M]
Length = 455
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 175/483 (36%), Positives = 274/483 (56%), Gaps = 40/483 (8%)
Query: 91 TFSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSH 148
T ST +T+I PPG A+ ++R+SGP V +F+ KK + +H
Sbjct: 4 TISTNEDTITAIATPPGVGAITVIRVSGPDTFSKVDLIFRGRKKISE---------CNTH 54
Query: 149 VVEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D +G V+D+VL +P SYT ED VE+ HGS++ +++ +E G +
Sbjct: 55 TIHYGTIVDPNGEVIDDVLVSVFRSPNSYTGEDSVEISTHGSQLIAEKIIGLLVERGIRI 114
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGRLDL+QAE V +I+++S A+ A + G S + ++R K I
Sbjct: 115 AEPGEFTKRAFLNGRLDLAQAEAVADVINSRSEASLRGARNQLDGLLSQKIDTLREKLIN 174
Query: 269 LLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
+ IE LDF ++++ L L ++ I + ++++ L++ + K+++ G+ +A+VG+P
Sbjct: 175 TSSLIELELDFAEEDIELLPLAKIISNIGEIEKEIDELLKSFRFGKVIRDGVNVALVGKP 234
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN K RAIV+EI GTTRD+I VT+ G+ L DTAGIR T+D++EK G
Sbjct: 235 NVGKSSLLNYLLKEARAIVSEIPGTTRDIIREEVTIEGILFKLYDTAGIRLTEDVIEKEG 294
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS ADV++ + G+ + + L ++Q ++ ++ V NKID P
Sbjct: 295 VERSRKAVSDADVVLFLNDSTHGFDRDIYDELLKLQKEER-------ILKVANKIDLKPG 347
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWA------VNQR 501
++ V A TG+GI++L L + G + N R
Sbjct: 348 LDKSFD---------VGISAKTGEGIEEL------FRKLKEKALGSGTYTEKSAVVTNLR 392
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
L + KE L+ K+SI+E L +F +DLR+A +LG+I G+ ++++L+NIF KFC
Sbjct: 393 HYNALNKAKEHLIGAKNSIKEGLTGEFVAVDLRNAENSLGEIIGKVTTDDILNNIFAKFC 452
Query: 562 IGK 564
IGK
Sbjct: 453 IGK 455
>gi|210624042|ref|ZP_03294159.1| hypothetical protein CLOHIR_02111 [Clostridium hiranonis DSM 13275]
gi|210153249|gb|EEA84255.1| hypothetical protein CLOHIR_02111 [Clostridium hiranonis DSM 13275]
Length = 462
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 161/403 (39%), Positives = 239/403 (59%), Gaps = 9/403 (2%)
Query: 163 VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNG 222
+DEVL M P SYT EDV+E+ CHG + ++R+L L LA+ GEFT RAFLNG
Sbjct: 68 IDEVLVAYMKGPNSYTAEDVIEINCHGGFISVKRILELVLSKDVRLAEAGEFTKRAFLNG 127
Query: 223 RLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DD 281
R+DLSQAE V +I+AK+ A + A + G S+ + R K ELL ++E +D+ ++
Sbjct: 128 RIDLSQAEAVIDVINAKTDKAHEVAENQLDGSLSNRIREFREKVTELLAQVEVAIDYPEE 187
Query: 282 EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKS 341
++ + + +K +++D++ ET+ K+ + GL+ IVG+PNVGKSSLLN+
Sbjct: 188 DIEFIAYTTLEEKTRELNKDIKKLYETSESGKIFREGLKTVIVGKPNVGKSSLLNSILGE 247
Query: 342 ERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVI 401
RAIVT+I GTTRDVIE V + G+P+ ++DTAGIRETDD+VEKIGVE+S A AD+I
Sbjct: 248 NRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRETDDVVEKIGVEKSMASFDTADLI 307
Query: 402 IMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFND 461
IM V + + ED E+L ++Q + IL++NK D E K + +
Sbjct: 308 IMVVDSSSELSEEDREILEKVQGKE--------TILLLNKTDLPQVIDEEEVKKYVNEEN 359
Query: 462 HVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIE 521
+ A+ +GI+D+ I +V I + N R + L R ++ +IE
Sbjct: 360 IIKISALHNEGIEDVHDRIEAMVYKGDIKSSSNVIITNSRHKDALYRAMKSAEDAMRAIE 419
Query: 522 EELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ +PLDF +DL++ LG I+G+ +SE++L NIF FCIGK
Sbjct: 420 DRMPLDFVEVDLKNIWDYLGYINGDTVSEDLLDNIFHNFCIGK 462
>gi|228474138|ref|ZP_04058875.1| tRNA modification GTPase TrmE [Staphylococcus hominis SK119]
gi|228271833|gb|EEK13170.1| tRNA modification GTPase TrmE [Staphylococcus hominis SK119]
Length = 459
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 172/476 (36%), Positives = 264/476 (55%), Gaps = 22/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI +I T +G GA+GIVRLSGP AV+I K SH +
Sbjct: 3 FDTITSISTPMG--EGAIGIVRLSGPEAVEI---------GDKLYKGKKKLKDVPSHTIN 51
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + VV+EV+ + AP+++TRED++E+ CHG + + R+L + GA +A+
Sbjct: 52 YGHIIDPETDEVVEEVMISVLRAPKTFTREDIIEINCHGGILTINRILELTMTHGARMAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGE+T RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+L
Sbjct: 112 PGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKQQRQSILEIL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ ++ + + +++ LET K+++ GL IVG+PN
Sbjct: 172 AQVEVNIDYPEYDDVEDATTEFLLAQSKKIKNEIDQLLETGTQGKIMREGLSTVIVGKPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIR+T+DIVEKIGV
Sbjct: 232 VGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD+I+ ++ + T ED L I++ I+++NK D
Sbjct: 292 ERSRKALSEADLILFVLNNNEPLTEEDRTLYEVIKNEDA--------IVIVNKTDLERRL 343
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E K + T + +GI +LE I + ++ + N R L +
Sbjct: 344 DIEEVKTMIGDTPLIQTSMLKQEGIDELELQIRDLFFGGEVQNQDMTYVSNSRHISLLKQ 403
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++ + + E +P+D IDL LG+I GE S+E+++ +F +FC+GK
Sbjct: 404 ARQTIQDAIDAAEAGIPMDMVQIDLTRTWELLGEIIGESASDELINQLFSQFCLGK 459
>gi|340753194|ref|ZP_08689985.1| tRNA modification GTPase mnmE [Fusobacterium sp. 2_1_31]
gi|422315503|ref|ZP_16396935.1| tRNA modification GTPase mnmE [Fusobacterium periodonticum D10]
gi|229424054|gb|EEO39101.1| tRNA modification GTPase mnmE [Fusobacterium sp. 2_1_31]
gi|404592380|gb|EKA94218.1| tRNA modification GTPase mnmE [Fusobacterium periodonticum D10]
Length = 455
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 172/480 (35%), Positives = 282/480 (58%), Gaps = 34/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T G G + IVR+SG +++I+ ++F+ K KK S ++ +
Sbjct: 3 LDTIAAISTPRG--EGGISIVRMSGQDSLNILEKIFRA---KSKKVSELKNYS-----IN 52
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG ++D ++VDEVL M AP +YTRED+VE+ CHG + +VL+ L+ GA +A+
Sbjct: 53 YGHIIDNE-HIVDEVLVSIMKAPNTYTREDIVEINCHGGFLVTEQVLQVVLKNGARIAEI 111
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V +I K+ + +L ++G + +++ ++L
Sbjct: 112 GEFTKRAFLNGRIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAA 171
Query: 272 EIEARLDF-----DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
I LD+ DD +P NLV D + S ++++ + + + K+++ G++ AI+G+
Sbjct: 172 HINVVLDYPEEGIDDPVPE---NLV-DNLKKASAEIKDLISSYDKGKIIKDGIKTAIIGK 227
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSS+LN+ + +RAIVT I GTTRD+IE + + G+P+ L+DTAGIR TDDIVE I
Sbjct: 228 PNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENI 287
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVE+S+ + AD+I+ + ED + + I ++K +I ++NKID
Sbjct: 288 GVEKSKELINSADLILYVIDISREIDEEDFRIYDIINTDK--------VIGILNKIDIKK 339
Query: 447 SAS-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCE 504
+++ K+ + + A++ GI +LE I K + + ++ + N R
Sbjct: 340 EIDLSKFPKI----DKWIEISALSKIGIDNLEDEIYKYIMNENVEDSSQKLVITNVRHKS 395
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L +T EAL+ + +I+ LP+D +D++DA +L +++GE SE++L +IF FC+GK
Sbjct: 396 ALEKTNEALLNIIETIDMGLPMDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455
>gi|422854351|ref|ZP_16901015.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK160]
gi|325695846|gb|EGD37737.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK160]
Length = 479
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 169/477 (35%), Positives = 274/477 (57%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 28 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKNLSKVESHTLN 75
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++ ++DEV+ M +P+++TRED++E+ HG +L+ + GA +A+
Sbjct: 76 YGHIVDPQNQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARMAE 135
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S+L+ + R + + L
Sbjct: 136 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTL 195
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + N L TA K+L+ G+ AI+GRPN
Sbjct: 196 AQVEVNIDYPEYDDVEEMTTQLMREKTAEFEDLLSNLLNTARRGKILREGISTAIIGRPN 255
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 256 VGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGV 315
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q + + I+++NK D
Sbjct: 316 ERSKKALQEADLVLLVLNASEPLTDQDKQLLEISQDSNR--------IVLLNKTDLEEKI 367
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
E +++ D + + Q I +E I ++ + I + N R +
Sbjct: 368 --ELDQLP---TDVIKISVLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIE 422
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 423 KALESLQAVNQGLEMGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 479
>gi|418559582|ref|ZP_13124121.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21252]
gi|418992728|ref|ZP_13540370.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG290]
gi|371974760|gb|EHO92077.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21252]
gi|377748735|gb|EHT72691.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
CIG290]
Length = 459
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 174/479 (36%), Positives = 271/479 (56%), Gaps = 28/479 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT-SHVV 150
TI +I T +G GA+GIVRLSGP AV+I +++K G SH +
Sbjct: 3 LDTITSISTPMG--EGAIGIVRLSGPQAVEIADKLYK----------GKHLLNDVPSHTI 50
Query: 151 EYGVVLDRHGNVVDEVLAVPML-APRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG ++D V E + V +L AP+++TRED++E+ CHG + + RVL + GA +A
Sbjct: 51 NYGHIIDPESKEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTHGARMA 110
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+
Sbjct: 111 EPGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEI 170
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ ++++ + Q++ L+T K+++ GL IVG+P
Sbjct: 171 LAQVEVNIDYPEYDDVEDATTEFLLERSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKP 230
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 231 NVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIG 290
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD+I+ ++ + T ED L +++ +I+++NK+D +
Sbjct: 291 VERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKNE--------DVIVIVNKMDLEQN 342
Query: 448 ASNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+ ++V D + T + +GI +LE I + ++ + N R
Sbjct: 343 I--DIDEVKKMIGDTPLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISL 400
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + ++ + + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 401 LKQARQTIQDAIDAAESGVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459
>gi|386586560|ref|YP_006082962.1| tRNA modification GTPase TrmE [Streptococcus suis D12]
gi|353738706|gb|AER19714.1| tRNA modification GTPase TrmE [Streptococcus suis D12]
Length = 457
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 181/480 (37%), Positives = 267/480 (55%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A I +VFK G SH +
Sbjct: 6 FDTITAISTPLG--EGAIGIVRLSGTDAFAIASKVFK----------GKDLATVPSHSLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TREDV+E+ HG +L+ + GA +A+
Sbjct: 54 YGHIIDPATGQVLDEVMLGVMRSPKTFTREDVIEINTHGGIAVTNEILQLLIRQGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A A+ + G S L+ R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDVIRAKTDKAMHNAVRQLDGSLSQLINDTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ LV +K +EN L TA+ K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTELVREKTLQFQALLENLLRTASRGKILREGIATAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVEKIGV
Sbjct: 234 VGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDIVEKIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD+I++ ++A + T +D LL + I+++NK D
Sbjct: 294 ERSKKALEEADLILLVLNASEPLTEQDRNLL--------AISDLANRIVLLNKTDL---- 341
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E + D + + Q I +E I ++ GL + A + N R
Sbjct: 342 -EEKIEADQLPEDVIRISVLKNQNIDQIEEKINQLFFENAGLVEQDA---TYLSNSRHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEQAVQSLQAVNDGLEMGMPVDLLQVDLTRCWQILGEITGDAAPDELITQLFSQFCLGK 457
>gi|386832270|ref|YP_006238924.1| tRNA modification GTPase [Staphylococcus aureus subsp. aureus HO
5096 0412]
gi|417799282|ref|ZP_12446426.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21310]
gi|418657169|ref|ZP_13218946.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-105]
gi|334274184|gb|EGL92511.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
21310]
gi|375031345|gb|EHS24627.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
IS-105]
gi|385197662|emb|CCG17317.1| probable tRNA modification GTPase [Staphylococcus aureus subsp.
aureus HO 5096 0412]
Length = 459
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 175/479 (36%), Positives = 271/479 (56%), Gaps = 28/479 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT-SHVV 150
TI +I T +G GA+GIVRLSGP AV+I ++K G SH +
Sbjct: 3 LDTITSISTPMG--EGAIGIVRLSGPQAVEIADILYK----------GKHLLNDVPSHTI 50
Query: 151 EYGVVLDRHGNVVDEVLAVPML-APRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG ++D V E + V +L AP+++TRED++E+ CHG + + RVL + GA +A
Sbjct: 51 NYGHIIDPESKEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTYGARMA 110
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+
Sbjct: 111 EPGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEI 170
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ ++++ + Q++ L+T K+++ GL IVG+P
Sbjct: 171 LAQVEVNIDYPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKP 230
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIRET+DIVEKIG
Sbjct: 231 NVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIG 290
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD+I+ ++ + T ED L +++ +I+++NK+D +
Sbjct: 291 VERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKNE--------DVIVIVNKMDLEQN 342
Query: 448 ASNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+ N+V + D + T + +GI +LE I + ++ + N R
Sbjct: 343 I--DINEVKDMIGDTPLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISL 400
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + ++ + + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 401 LKQARQTIQDAIDAAESGVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459
>gi|169825321|ref|YP_001692932.1| tRNA modification GTPase [Finegoldia magna ATCC 29328]
gi|205829141|sp|B0S3V2.1|MNME_FINM2 RecName: Full=tRNA modification GTPase MnmE
gi|167832126|dbj|BAG09042.1| tRNA modification GTPase [Finegoldia magna ATCC 29328]
Length = 452
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 180/478 (37%), Positives = 275/478 (57%), Gaps = 38/478 (7%)
Query: 95 IAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGV 154
IAAI ++ G +GIVR++G D++ VFK K + + YG
Sbjct: 5 IAAISSATG--EAGIGIVRMTGEGCADVLDSVFKRANDKAD---------FINRKMTYGH 53
Query: 155 VLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEF 214
++D + +VDEVL M AP +YTREDVVE+ HG V +R+VL L GA LA+ GEF
Sbjct: 54 IVDDN-EIVDEVLVCYMKAPHTYTREDVVEIYTHGGVVAVRKVLEVLLNNGARLAEAGEF 112
Query: 215 TLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIE 274
T RAFLNGR+DLSQAE + +I AK+ A ++ ++G + + +R K +++L+ +E
Sbjct: 113 TKRAFLNGRIDLSQAEAIIDMIKAKTDKAYSVSMKQLEGSVNRNIKQLRDKLLDMLSHVE 172
Query: 275 ARLDFDDEM-------PPLNLNL-VMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
++F ++M P LN V+DK+ +S E+AN ++++ G+ I+G+
Sbjct: 173 YSINFTEDMQDELDNTPVLNEGKEVLDKLKKLS-------ESANRGRIIRDGINTTIIGK 225
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLNA K RAIVT+I GTTRDVIE + + G+ + + DTAGIR+T+DIVEKI
Sbjct: 226 PNVGKSSLLNALLKENRAIVTDIPGTTRDVIEEYIDLDGISLKINDTAGIRDTEDIVEKI 285
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVE+S + +D+II + + ED ++L+ I+ +KKS I+++NKID
Sbjct: 286 GVEKSVSFISDSDLIIAIFDSSREFDDEDRKILDLIR-DKKS-------IVLLNKIDLDG 337
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ N G + T +GI+DLE I+++ I A N R + +
Sbjct: 338 EFDVDENLEGIEV---IHTSIKNNEGIEDLENKIIEMFNDGYIEANNDNIITNIRHRDII 394
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++L +E +P+D + +DLR+A LG+I+GE + ++VL+ IF FCIGK
Sbjct: 395 NKAIKSLESSLHDMEAGVPIDCFEVDLRNAWEILGEITGETVDDDVLNKIFSDFCIGK 452
>gi|224475497|ref|YP_002633103.1| tRNA modification GTPase TrmE [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222420104|emb|CAL26918.1| putative tRNA modification GTPase TrmE [Staphylococcus carnosus
subsp. carnosus TM300]
Length = 460
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 176/478 (36%), Positives = 268/478 (56%), Gaps = 26/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TI +I T +G GA+GIVRLSG AV+I +++K K + S H +
Sbjct: 4 LDTITSISTPMG--EGAIGIVRLSGKEAVEITDKLYKGKKPLAEVES---------HTIN 52
Query: 152 YGVVLDRHGNVVDEVLAVPML-APRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V E + V +L AP+++TRED+VE+ CHG + + VL + GA LA+
Sbjct: 53 YGHIVDPETNEVVEEVMVSVLRAPKTFTREDIVEINCHGGILTINHVLELTMSYGARLAE 112
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGE+T RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S ++ R +E+L
Sbjct: 113 PGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDMIKRQRQSILEIL 172
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ ++ + + +D++ L T K+++ GL IVG+PN
Sbjct: 173 AQVEVNIDYPEYDDVEDATTEFLLKQSKEIKEDIDKLLATGTQGKIMREGLSTVIVGKPN 232
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIRET+DIVEKIGV
Sbjct: 233 VGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGV 292
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD+I+ ++ +G T ED +L I++ I+++NK D
Sbjct: 293 ERSRKALSEADLILFVLNYNEGLTEEDRKLYEVIKNE--------DAIIIVNKTDLEQHL 344
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ ++V D + T + +GI LE I + ++ + N R L
Sbjct: 345 --DLDEVKAMVGDMPVIETSMLKQEGIDQLEEQIRDLFFGGEVQNQDMTYVSNSRHISLL 402
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + A+ + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 403 KQARNAIQDAIDAAEAGVPMDMVQIDLTRTWQILGEIIGESASDELIDQLFSQFCLGK 460
>gi|424780799|ref|ZP_18207669.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Catellicoccus
marimammalium M35/04/3]
gi|422842724|gb|EKU27173.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Catellicoccus
marimammalium M35/04/3]
Length = 464
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 190/481 (39%), Positives = 280/481 (58%), Gaps = 31/481 (6%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
F TIAAI T PPG A+ IVRLSG A+ I+ ++++ KK + SH
Sbjct: 7 FDTIAAIST----PPGEGALHIVRLSGEDALSIIDQIYRQGTKKLSEVP--------SHT 54
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++D + +V+DEV+ M AP++YTREDVVE+ CHG V + VL+ L GA L
Sbjct: 55 IHYGHIVDPKTEDVIDEVMVTVMKAPKTYTREDVVEINCHGGVVVVNEVLQLLLRVGARL 114
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DLSQAE V LI+AK+ + + A+ + G S+ + VR K +
Sbjct: 115 AEPGEFTKRAFLNGRIDLSQAEAVIDLITAKTANSREMAVQQLDGKLSTWIREVRGKIFQ 174
Query: 269 LLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDV----ENALETANYDKLLQSGLQIAIV 324
L E+E +D+ E + L + +K++ + +V + L +A K+L+ GL AI+
Sbjct: 175 TLGEVEVNIDYP-EYDDVEL-VTSEKLNQCAGEVITELDEVLASATQGKILRDGLATAII 232
Query: 325 GRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVE 384
GRPNVGKSSLLN + ++AIVT+IAGTTRDVIE V V GVP+ L+DTAGIRET+DIVE
Sbjct: 233 GRPNVGKSSLLNDLLREDKAIVTDIAGTTRDVIEEYVNVEGVPLKLIDTAGIRETEDIVE 292
Query: 385 KIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDC 444
+IGVERS AD++++ ++ + ED LL K+TE S I+++NK+D
Sbjct: 293 QIGVERSRKALAEADLVLLLLNNNEELGEEDIALL-------KATEDS-DRIIILNKMDL 344
Query: 445 APSASNEWNKVGNSFNDHVFTCAVTGQ-GIQDLETAIMKIVGLHQIPAGGRRWAVNQRQC 503
+ N++ ++ Q G++ + AI +I + N R
Sbjct: 345 PSHLDRTELQKYLKPNENFLEISIRAQEGVRQVGKAIHDRFFQGEIQR-DHLYISNVRHI 403
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
L K AL ++ +I LP+D +D+ A LG+I+G+ + +E+L +F FC+G
Sbjct: 404 HLLEEAKSALEEVQQAIGMGLPIDLCQMDMVRAWNLLGEITGDSVQDELLDQLFSNFCLG 463
Query: 564 K 564
K
Sbjct: 464 K 464
>gi|422855440|ref|ZP_16902098.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK1]
gi|327462129|gb|EGF08456.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK1]
Length = 457
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 169/477 (35%), Positives = 273/477 (57%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKNLSEVESHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++ ++DEV+ M +P+++TRED++E+ HG +L+ + GA +A+
Sbjct: 54 YGHIVDPQNQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S+L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQELLNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + N L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTQLMREKTAEFEALLSNLLDTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q + + I+++NK D
Sbjct: 294 ERSKKALQEADLVLLVLNASEPLTDQDRQLLEISQDSNR--------IVLLNKTDL---- 341
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
E ++ D + + Q I +E I ++ + I + N R +
Sbjct: 342 -EEKIELDQLPTDAIKISVLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIE 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 401 KALESLQAVNQGLEMGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|335031416|ref|ZP_08524855.1| tRNA modification GTPase TrmE [Streptococcus anginosus SK52 = DSM
20563]
gi|333769666|gb|EGL46764.1| tRNA modification GTPase TrmE [Streptococcus anginosus SK52 = DSM
20563]
Length = 457
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 171/477 (35%), Positives = 273/477 (57%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTNSFAIAQKIFK----------GKDLSTVASHTLN 53
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N ++DEV+ M +P+++TREDV+E+ HG + + + GA +A+
Sbjct: 54 YGHIIDPEKNEILDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEIFQLAIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE + +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAIMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + + L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTKLLREKTAEFEKLLTQLLKTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIR+TDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ A+++++ ++A + T +D +LL Q T IL++NK D
Sbjct: 294 ERSKKALQDANLVLLVLNASEPLTEQDRKLLEISQ--------DTNRILLLNKTDLEEKI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
E +++ ++F + + Q I +E I ++ + I + N R +
Sbjct: 346 --EVDQLPDNF---IKISVLQNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIE 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + ++ +P+D +DL LG+I+G+ +E++S +F +FC+GK
Sbjct: 401 KAVESLQAVNEGLDLGMPVDLVQVDLTRTWEILGEITGDAAPDELISQLFSQFCLGK 457
>gi|15925702|ref|NP_373236.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
Mu50]
gi|156981027|ref|YP_001443286.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
Mu3]
gi|255007483|ref|ZP_05146084.2| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|21363015|sp|Q931E1.1|MNME_STAAM RecName: Full=tRNA modification GTPase MnmE
gi|166234822|sp|A7X7A8.1|MNME_STAA1 RecName: Full=tRNA modification GTPase MnmE
gi|14248487|dbj|BAB58874.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus
Mu50]
gi|156723162|dbj|BAF79579.1| possible thiophene and furan oxidation protein [Staphylococcus
aureus subsp. aureus Mu3]
Length = 459
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 174/479 (36%), Positives = 271/479 (56%), Gaps = 28/479 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPT-SHVV 150
TI +I T +G GA+GIVRLSGP AV+I +++K G SH +
Sbjct: 3 LDTITSISTPMG--EGAIGIVRLSGPQAVEIADKLYK----------GKHLLNDVPSHTI 50
Query: 151 EYGVVLDRHGNVVDEVLAVPML-APRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG ++D V E + V +L AP+++TRED++E+ CHG + + RVL + GA +A
Sbjct: 51 NYGHIIDPESKEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTYGARMA 110
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+
Sbjct: 111 EPGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEI 170
Query: 270 LTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
L ++E +D+ D++ ++++ + Q++ L+T K+++ GL IVG+P
Sbjct: 171 LAQVEVNIDYPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKP 230
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSS+LN + +AIVTE+AGTTRDV+E V V VP+ L+DTAGIRET+DIVEKIG
Sbjct: 231 NVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRSVPLRLVDTAGIRETEDIVEKIG 290
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS AD+I+ ++ + T ED L +++ +I+++NK+D +
Sbjct: 291 VERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKNE--------DVIVIVNKMDLEQN 342
Query: 448 ASNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+ N+V + D + T + +GI +LE I + ++ + N R
Sbjct: 343 I--DINEVKDMIGDTPLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISL 400
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + ++ + + E +P+D IDL LG+I GE S+E++ +F +FC+GK
Sbjct: 401 LKQARQTIQDAIDAAESGVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459
>gi|291561652|emb|CBL40451.1| tRNA modification GTPase trmE [butyrate-producing bacterium SS3/4]
Length = 471
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 175/478 (36%), Positives = 277/478 (57%), Gaps = 32/478 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++G +GIVR+SG AV++ ++F+ KKK + SH + YG
Sbjct: 19 TIAAIATAMGNS--GIGIVRISGENAVEVAEKIFREPGKKKLSEA-------ESHTIHYG 69
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
V D VDEVL + M PRSYT ED VE+ CHG + RR+L L+AGA LA+PGE
Sbjct: 70 YVYD-GDETVDEVLLMLMRGPRSYTAEDTVEIDCHGGMLVTRRILETVLKAGARLAEPGE 128
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGR+DLSQAE V +I+AK+ A ++++ ++G S + +R + I + I
Sbjct: 129 FTKRAFLNGRIDLSQAEAVIDVINAKNEYALQSSVSQLRGSVSKEIHEIRDQIIYEIAFI 188
Query: 274 EARLDFDDEMPPLNLNL------VMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
E+ LD P ++++ ++ + ++ + +E + +++ +++ G++ I+G+P
Sbjct: 189 ESALD-----DPEHISMDGYGEKLLKVVLSVKKKLEKLIRSSSNGRVVSEGVKTVILGKP 243
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
N GKSSL+N +RAIVT++AGTTRD++E + + G+ + ++DTAGIR+T+D+VEKIG
Sbjct: 244 NAGKSSLMNVLVGEDRAIVTDVAGTTRDILEEHIYLQGISLNVVDTAGIRDTEDVVEKIG 303
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
V R+ A AD+II V D ++++ I+ K ++++NK D P
Sbjct: 304 VSRAMEEAKKADLIIYVVDGSRELDENDYQIMDFIKERKS--------VVLLNKSDLEPV 355
Query: 448 AS-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
S +E K S + + A GI LE I + +I + N R + L
Sbjct: 356 VSADEVEK--RSGHKVIGISAKEETGIDLLEEEIKSLFYEGEIDFNDQVMITNVRHVKAL 413
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
E++ +++SIE +P DF++IDL DA LG I GE + +++++ IF KFC+GK
Sbjct: 414 KDAFESMSMVENSIENGMPEDFYSIDLMDAYEKLGLIVGESVEDDLVNEIFSKFCMGK 471
>gi|310644871|ref|YP_003949630.1| tRNA modification GTPase mnme [Paenibacillus polymyxa SC2]
gi|309249822|gb|ADO59389.1| tRNA modification GTPase mnmE [Paenibacillus polymyxa SC2]
gi|392305511|emb|CCI71874.1| tRNA modification GTPase mnmE [Paenibacillus polymyxa M1]
Length = 458
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 182/474 (38%), Positives = 271/474 (57%), Gaps = 23/474 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++G G + +VR+SGP AV V +F+ S S PT H V YG
Sbjct: 5 TIAAIATAVG--EGGIAVVRVSGPEAVTEVEALFR--------SKTPLSKVPT-HTVHYG 53
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D + V+EVL M APRS+T EDVVE+ HG V ++RV+ L LA+PG
Sbjct: 54 HIIDPQSQEKVEEVLVTVMRAPRSFTTEDVVEISTHGGVVAVKRVMDLLLLQNIRLAEPG 113
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQAE V LI +KS A AL + G S + +R +E L
Sbjct: 114 EFTKRAFLNGRIDLSQAEGVIDLIRSKSDKAFSMALKQVDGQLSQNIRRLRHVLVETLAH 173
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IE +D+ + ++ L+ DK + +++ L TA K+L+ GL AIVGRPNVGK
Sbjct: 174 IEVNIDYPEHDVESFTSELIKDKSSQVMAEIDRLLHTAEQGKILREGLTTAIVGRPNVGK 233
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLN ++ ERAIVT+I GTTRDVIE VT+ +P+ LLDTAGIRET D+VE+IGVERS
Sbjct: 234 SSLLNTLAQGERAIVTDIPGTTRDVIEEYVTINNIPLKLLDTAGIRETMDVVERIGVERS 293
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
AD++++ ++A + ++ L+ +I+ + I+++NK+D P+ +
Sbjct: 294 RTAVSEADLLLIVINANEPLHEDEMALMEQIRGRQA--------IVIMNKMDL-PAQIDR 344
Query: 452 WNKVGNSFNDHVFTCAVT-GQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+ + + +V +G LE AI + ++ + + N R L + +
Sbjct: 345 DLLLRYVPEELIVPMSVKENEGADRLEQAISNLFFSGKLESADMTYVSNVRHIALLKKAR 404
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++LV + ++ +P+D ID+R A LG+I G+ + ++ IF +FC+GK
Sbjct: 405 QSLVDAYEAADQLVPIDMIQIDVRLAWEQLGEIVGDTAHDALIDQIFSQFCLGK 458
>gi|294781805|ref|ZP_06747138.1| tRNA modification GTPase TrmE [Fusobacterium sp. 1_1_41FAA]
gi|294481915|gb|EFG29683.1| tRNA modification GTPase TrmE [Fusobacterium sp. 1_1_41FAA]
Length = 455
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 171/480 (35%), Positives = 282/480 (58%), Gaps = 34/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T G G + IVR+SG +++I+ ++F+ K KK S ++ +
Sbjct: 3 LDTIAAISTPRG--EGGISIVRMSGQDSLNILEKIFRA---KNKKVSELKNYS-----IN 52
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG ++D ++VDEVL M AP +YTRED+VE+ CHG + +VL+ L+ GA +A+
Sbjct: 53 YGHIIDNE-HIVDEVLVSIMKAPNTYTREDIVEINCHGGFLVTEQVLQVVLKNGARIAEI 111
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V +I K+ + +L ++G + +++ ++L
Sbjct: 112 GEFTKRAFLNGRIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAA 171
Query: 272 EIEARLDF-----DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
I LD+ DD +P NLV D + S ++++ + + + K+++ G++ AI+G+
Sbjct: 172 HINVVLDYPEEGIDDPVPE---NLV-DNLKKASAEIKDLISSYDKGKIIKDGIKTAIIGK 227
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSS+LN+ + +RAIVT I GTTRD+IE + + +P+ L+DTAGIR TDDIVE I
Sbjct: 228 PNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININSIPLLLVDTAGIRNTDDIVENI 287
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVE+S+ + AD+I+ + ED + I ++K +I ++NKID
Sbjct: 288 GVEKSKELINSADLILYVIDTSREIDEEDFRIYEIINTDK--------VIGILNKIDIKK 339
Query: 447 SAS-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCE 504
++++K+ + + A++ GI +LE I K + + ++ + N R
Sbjct: 340 EIDLSKFSKI----DKWIEISALSKIGIDNLEDQIYKYIMNENVEDSSQKLVITNVRHKS 395
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L +T EAL+ + +I+ LP+D +D++DA +L +++GE SE++L++IF FC+GK
Sbjct: 396 ALEKTNEALLNIIETIDMGLPMDLMAVDIKDALDSLSEVTGEISSEDLLNHIFSNFCVGK 455
>gi|223932526|ref|ZP_03624527.1| tRNA modification GTPase TrmE [Streptococcus suis 89/1591]
gi|302024152|ref|ZP_07249363.1| tRNA modification GTPase TrmE [Streptococcus suis 05HAS68]
gi|330833106|ref|YP_004401931.1| tRNA modification GTPase TrmE [Streptococcus suis ST3]
gi|386584498|ref|YP_006080901.1| tRNA modification GTPase TrmE [Streptococcus suis D9]
gi|223898797|gb|EEF65157.1| tRNA modification GTPase TrmE [Streptococcus suis 89/1591]
gi|329307329|gb|AEB81745.1| tRNA modification GTPase TrmE [Streptococcus suis ST3]
gi|353736644|gb|AER17653.1| tRNA modification GTPase TrmE [Streptococcus suis D9]
Length = 457
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 181/480 (37%), Positives = 266/480 (55%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A I +VFK G SH +
Sbjct: 6 FDTITAISTPLG--EGAIGIVRLSGTDAFAIASKVFK----------GKDLATVPSHSLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D G V+DEV+ M +P+++TREDV+E+ HG +L+ + GA +A+
Sbjct: 54 YGHIIDPATGQVLDEVILGVMRSPKTFTREDVIEINTHGGIAVTNEILQLLIRQGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A A+ + G S L+ R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDVIRAKTDKAMHNAVRQLDGSLSQLINDTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ LV +K +EN L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTELVREKTLQFQALLENLLRTARRGKILREGIATAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVEKIGV
Sbjct: 234 VGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDIVEKIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD+I++ ++A + T +D LL + I+++NK D
Sbjct: 294 ERSKKALEEADLILLVLNASEPLTEQDRNLL--------AISDLANRIVLLNKTDL---- 341
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E + D + + Q I +E I ++ GL + A + N R
Sbjct: 342 -EEQIEADQLPEDVIRISVLKNQNIDQIEEKINQLFFENAGLVEQDA---TYLSNSRHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEQAVQSLQAVNDGLEMGMPVDLLQVDLTRCWQILGEITGDAAPDELITQLFSQFCLGK 457
>gi|337286002|ref|YP_004625475.1| tRNA modification GTPase TrmE [Thermodesulfatator indicus DSM
15286]
gi|335358830|gb|AEH44511.1| tRNA modification GTPase TrmE [Thermodesulfatator indicus DSM
15286]
Length = 466
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 189/495 (38%), Positives = 285/495 (57%), Gaps = 58/495 (11%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVF---KPVKKKKKKSSGSGSWRPTS 147
T +TIAAI T IG PGA+G++++SG ++ I+ R+F KP+K+ + S
Sbjct: 9 TEATIAAIATPIG--PGAIGVIKVSGSLSEKILKRLFRSKKPIKEFQ------------S 54
Query: 148 HVVEYGVVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGA 206
H + YG +++ VDEVL M P +YTREDV+E+ H + L ++L L+ GA
Sbjct: 55 HRLYYGYIVNPETETPVDEVLITLMRKPHTYTREDVLEIYGHSGYLVLTKILELVLKEGA 114
Query: 207 TLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKC 266
LA+PGEFT RAFLNGR+DLSQAE + LI+A+S + AL ++G + + VR
Sbjct: 115 RLAEPGEFTKRAFLNGRIDLSQAEALLDLINARSEESLKLALNQLRGALAEKLRPVREAL 174
Query: 267 IELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVEN-ALE-----TANYD--KLLQSG 318
+ L +E +DF DE ++ + + +++++EN LE NY +L + G
Sbjct: 175 LSALAVVEVAVDFPDE------DVEIISHYELAENLENQVLEPLKELLKNYQEGRLYREG 228
Query: 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRE 378
+ + I GRPNVGKSSLLNA ERAIVT I GTTRD+IE T+ G+PV L+DTAG+RE
Sbjct: 229 IAVVIAGRPNVGKSSLLNALLAEERAIVTPIPGTTRDIIEEFATIKGLPVRLIDTAGLRE 288
Query: 379 TDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILV 438
T+D+VE+IGV++++ ADV+I + T ED +L I+ + P ++V
Sbjct: 289 TEDLVEEIGVKKAKEKIATADVVIFMLDGSLEPTEEDLKLYQEIK--------AMPHLVV 340
Query: 439 INKIDCAPSASNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIV-GLHQ------I 489
INKID A + N+ F +F A TG+G++ L AI ++V G + +
Sbjct: 341 INKIDIA--SHENLNRYREIFPQEKLIFISARTGEGLEALAEAIFELVTGRTEEFIPSVV 398
Query: 490 PAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDIS 549
P ++ A+ L T++A+ LK + ++ + IDLRDA +LG+I+GE +
Sbjct: 399 PNLRQKMAIEN----ALKATEQAISNLKKT---DIYPELIAIDLRDALSSLGEITGETTT 451
Query: 550 EEVLSNIFGKFCIGK 564
E++L IF FC+GK
Sbjct: 452 EDLLDRIFSNFCLGK 466
>gi|314935198|ref|ZP_07842551.1| tRNA modification GTPase TrmE [Staphylococcus hominis subsp.
hominis C80]
gi|313656533|gb|EFS20272.1| tRNA modification GTPase TrmE [Staphylococcus hominis subsp.
hominis C80]
Length = 459
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 171/476 (35%), Positives = 264/476 (55%), Gaps = 22/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI +I T +G GA+GIVRLSGP AV+I K SH +
Sbjct: 3 FDTITSISTPMG--EGAIGIVRLSGPEAVEI---------GDKLYKGKKKLKDVPSHTIN 51
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + VV+EV+ + AP+++TRED++E+ CHG + + R+L + GA +A+
Sbjct: 52 YGHIIDPETDEVVEEVMISVLRAPKTFTREDIIEINCHGGILTINRILELTMTHGARMAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGE+T RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+L
Sbjct: 112 PGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKQQRQSILEIL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ ++ + + +++ LET K+++ GL IVG+PN
Sbjct: 172 AQVEVNIDYPEYDDVEDATTEFLLAQSKKIKNEIDQLLETGTQGKIMREGLSTVIVGKPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIR+T+DIVEKIGV
Sbjct: 232 VGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD+I+ ++ + T ED L I++ I+++NK D
Sbjct: 292 ERSRKALSEADLILFVLNNNEPLTEEDRTLYEVIKNEDA--------IVIVNKTDLERRL 343
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E K + T + +G+ +LE I + ++ + N R L +
Sbjct: 344 DIEEVKTMIGDTPLIQTSMLKQEGVDELELQIRDLFFGGEVQNQDMTYVSNSRHISLLKQ 403
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++ + + E +P+D IDL LG+I GE S+E+++ +F +FC+GK
Sbjct: 404 ARQTIQDAIDAAEAGIPMDMVQIDLTRTWELLGEIIGESASDELINQLFSQFCLGK 459
>gi|334135651|ref|ZP_08509134.1| tRNA modification GTPase TrmE [Paenibacillus sp. HGF7]
gi|333606846|gb|EGL18177.1| tRNA modification GTPase TrmE [Paenibacillus sp. HGF7]
Length = 458
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 175/473 (36%), Positives = 270/473 (57%), Gaps = 21/473 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T +G G + +VR+SG AV +V +P+ + K K S +H + YG
Sbjct: 5 TIAAIATPLG--EGGIAVVRVSGDEAVKLV----EPLFRSKVKLS-----EAQTHTIHYG 53
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++ G+ ++EVL M APRS+T EDVVE+ CHG V ++RV+ LE G +A+PG
Sbjct: 54 HIIHPSSGDKIEEVLISVMRAPRSFTTEDVVEINCHGGIVSVKRVMDLLLEQGIRVAEPG 113
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DL+QAE V LI +KS A AL + G S + +R + +EL+
Sbjct: 114 EFTKRAFLNGRIDLTQAEAVIDLIRSKSDRAFQIALKQVDGNLSKAIGELRYQLVELMAH 173
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IE +D+ + ++ + + ++ +S ++ L TA + K+L+ G+ AI+G+PNVGK
Sbjct: 174 IEVNIDYPEHDVEEMTNAFIRERCIQVSSRIDELLRTAEHGKILREGIVTAIIGKPNVGK 233
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLN ++ RAIVT+I GTTRDVIE V V G+P+ LLDTAGIRET D+VE+IGVERS
Sbjct: 234 SSLLNTLAQENRAIVTDIPGTTRDVIEEYVNVGGIPLKLLDTAGIRETSDLVEQIGVERS 293
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
AD+I++ +++ + E+ ++ ++ + I+++NK D +
Sbjct: 294 RTALSEADLILLVLNSSEPLLPEELAMIEELRQRQT--------IVILNKTDLPLQIDKD 345
Query: 452 WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKE 511
+ V + G G+ +LE AI I + + + N R L + K
Sbjct: 346 EIEAKFPQGRVVSLSLLEGSGLAELEKAISAIFFEGNLESTDLTYVSNVRHIGLLKQAKG 405
Query: 512 ALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+L + + +P+D ID+R A LG+I G+ ++E ++ IF +FC+GK
Sbjct: 406 SLREAMEANDAYVPIDMIQIDIRAAWEHLGEIIGDSVAESLIDQIFSQFCLGK 458
>gi|422882368|ref|ZP_16928824.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK355]
gi|332360300|gb|EGJ38113.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK355]
Length = 457
Score = 289 bits (740), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 169/477 (35%), Positives = 272/477 (57%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKNLSEVESHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++ ++DEV+ M +P+++TRED++E+ HG +L+ + GA +A+
Sbjct: 54 YGHIVDPQNQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S+L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTQLMREKTAEFETLLSNLLNTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q + + I+++NK D
Sbjct: 294 ERSKKALQEADLVLLVLNASEQLTDQDRQLLEISQDSNR--------IVLLNKTDL---- 341
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
E ++ D + + Q I +E I ++ + I + N R +
Sbjct: 342 -EEKIELDQLPTDVIKISVLHNQNIDKIEERINHLIFENAGIVEQDATYLSNARHISLIE 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 401 KALESLQAVNQGLEMGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|322516820|ref|ZP_08069722.1| tRNA modification GTPase TrmE [Streptococcus vestibularis ATCC
49124]
gi|322124657|gb|EFX96121.1| tRNA modification GTPase TrmE [Streptococcus vestibularis ATCC
49124]
Length = 456
Score = 289 bits (740), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 176/479 (36%), Positives = 270/479 (56%), Gaps = 35/479 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG AV I +VFK G SH +
Sbjct: 7 FDTITAISTPLG--EGAIGIVRLSGTDAVAIANKVFK----------GKNLETVASHTIN 54
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +++ + +DEV+ M AP+++TREDVVE+ HG +L+ + +GA +A+P
Sbjct: 55 YGHIVE-NDETIDEVMVSVMRAPKTFTREDVVEINTHGGVAVTNEILQLLIRSGARMAEP 113
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAFLNGR+DL+QAE V LI AK+ A A++ + G L+ + R + + L
Sbjct: 114 GEFTKRAFLNGRVDLTQAEAVMDLIRAKTDKAMAVAVSQLDGSLKDLINNTRQEILNTLA 173
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
++E +D+ D++ + LV +K +EN L TA K+L+ GL AI+GRPNV
Sbjct: 174 QVEVNIDYPEYDDVEEVTTALVREKTQDFQALLENLLATAKRGKILREGLSTAIIGRPNV 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIR+TDD+VEKIGVE
Sbjct: 234 GKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVE 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS+ AD++++ +++ + T +D LL +++ + I+++NK D +
Sbjct: 294 RSKKALEEADLVLLVLNSSEPLTEQDRTLLEISKNSNR--------IILLNKTDLPQAIQ 345
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKI----VGLHQIPAGGRRWAVNQRQCEQ 505
E D + + + I +E I ++ GL + A + N R
Sbjct: 346 MEELP-----EDVIPISVLKNENIDKIEDRINQLFFDNAGLVEKDA---TYLSNARHISL 397
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 IESALESLEAVNQGLELGMPVDLLQVDITRTWEILGEITGDAAPDELITQLFSQFCLGK 456
>gi|418618850|ref|ZP_13181702.1| tRNA modification GTPase TrmE [Staphylococcus hominis VCU122]
gi|374826419|gb|EHR90316.1| tRNA modification GTPase TrmE [Staphylococcus hominis VCU122]
Length = 459
Score = 289 bits (740), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 171/476 (35%), Positives = 264/476 (55%), Gaps = 22/476 (4%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
+ TI +I T +G GA+GIVRLSGP AV+I K SH +
Sbjct: 3 YDTITSISTPMG--EGAIGIVRLSGPEAVEI---------GDKLYKGKKKLKDVPSHTIN 51
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + VV+EV+ + AP+++TRED++E+ CHG + + R+L + GA +A+
Sbjct: 52 YGHIIDPETHEVVEEVMISVLRAPKTFTREDIIEINCHGGILTINRILELTMTHGARMAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGE+T RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+L
Sbjct: 112 PGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKQQRQSILEIL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ ++ + + +++ LET K+++ GL IVG+PN
Sbjct: 172 AQVEVNIDYPEYDDVEDATTEFLLAQSKKIKNEIDQLLETGTQGKIMREGLSTVIVGKPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIR+T+DIVEKIGV
Sbjct: 232 VGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD+I+ ++ + T ED L I++ I+++NK D
Sbjct: 292 ERSRKALSEADLILFVLNNNEPLTEEDRTLYEVIKNEDA--------IVIVNKTDLERQL 343
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E K + T + +GI +LE I + ++ + N R L +
Sbjct: 344 DIEEVKTMIGDTPLIQTSMLKQEGIDELELQIRDLFFGGEVQNQDMTYVSNSRHISLLKQ 403
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++ + + E +P+D IDL LG+I GE S+E+++ +F +FC+GK
Sbjct: 404 ARQTIQDAIDAAEAGIPMDMVQIDLTRTWELLGEIIGESASDELINQLFSQFCLGK 459
>gi|262282851|ref|ZP_06060618.1| tRNA modification GTPase mnmE [Streptococcus sp. 2_1_36FAA]
gi|262261103|gb|EEY79802.1| tRNA modification GTPase mnmE [Streptococcus sp. 2_1_36FAA]
Length = 457
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 169/477 (35%), Positives = 273/477 (57%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSKVESHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++ ++DEV+ M +P+++TRED++E+ HG +L+ + GA +A+
Sbjct: 54 YGHIVDPQNQEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQLVIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S+L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTQLMREKTAEFEALLSNLLNTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q + + I+++NK D
Sbjct: 294 ERSKKALQEADLVLLVLNASEPLTDQDKQLLEISQDSNR--------IVLLNKTDL---- 341
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
E ++ D + + Q I +E I ++ + I + N R +
Sbjct: 342 -EEKIELDQLPADAIKISVLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIE 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 401 KALESLQAVNQGLEMGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|422860055|ref|ZP_16906699.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK330]
gi|327470938|gb|EGF16394.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK330]
Length = 457
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 168/477 (35%), Positives = 273/477 (57%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKNLSKVESHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++ ++DEV+ M +P+++TRED++E+ HG +L+ + GA +A+
Sbjct: 54 YGHIVDPQNQEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S+L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + N L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTQLMREKTAEFEALLSNLLDTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++ + T +D +LL Q + + I+++NK D
Sbjct: 294 ERSKKALQEADLVLLVLNVSEPLTDQDKQLLEISQDSNR--------IVLLNKTDL---- 341
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
E ++ D + + Q I +E I ++ + I + N R +
Sbjct: 342 -EEKIELDQLPTDVIKISVLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIE 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 401 KALESLQAVNQGLEMGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|302380979|ref|ZP_07269440.1| tRNA modification GTPase TrmE [Finegoldia magna ACS-171-V-Col3]
gi|303234699|ref|ZP_07321327.1| tRNA modification GTPase TrmE [Finegoldia magna BVS033A4]
gi|302311200|gb|EFK93220.1| tRNA modification GTPase TrmE [Finegoldia magna ACS-171-V-Col3]
gi|302494182|gb|EFL53960.1| tRNA modification GTPase TrmE [Finegoldia magna BVS033A4]
Length = 452
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 179/478 (37%), Positives = 279/478 (58%), Gaps = 38/478 (7%)
Query: 95 IAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGV 154
IAAI ++ G +GIVR++G D++ VFK +++ + + + + YG
Sbjct: 5 IAAISSATG--EAGIGIVRMTGEGCADVLDSVFK-------RANDNADF--INRKMTYGH 53
Query: 155 VLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEF 214
++D + +VDEVL M AP +YTREDVVE+ HG V +R+VL L GA LA+ GEF
Sbjct: 54 IVDDN-EIVDEVLVCYMKAPHTYTREDVVEIYTHGGVVAVRKVLEVLLNNGARLAEAGEF 112
Query: 215 TLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIE 274
T RAFLNGR+DLSQAE + +I AK+ A ++ ++G + + +R K +++L+ +E
Sbjct: 113 TKRAFLNGRIDLSQAEAIIDMIKAKTDKAYSVSMKQLEGSVNRNIKQLRDKLLDMLSHVE 172
Query: 275 ARLDFDDEM-------PPLNLNL-VMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
++F ++M P LN V+DK+ +S E+AN ++++ G+ I+G+
Sbjct: 173 YSINFTEDMQDELDNTPVLNEGKEVLDKLKKLS-------ESANRGRIIRDGINTTIIGK 225
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLNA K RAIVT+I GTTRDVIE + + G+ + + DTAGIR+T+DIVEKI
Sbjct: 226 PNVGKSSLLNALLKENRAIVTDIPGTTRDVIEEYIDLDGISLKINDTAGIRDTEDIVEKI 285
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVE+S + +D+II + + ED ++L+ I+ +KKS I+++NKID
Sbjct: 286 GVEKSVSFISDSDLIIAIFDSSREFDDEDRKILDLIR-DKKS-------IVLLNKIDLDG 337
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ N G + T +GI+DLE I+++ I A N R + +
Sbjct: 338 EFDVDENLEGIEV---IHTSIKNNEGIEDLENKIIEMFNDGYIEANNDNIITNIRHRDII 394
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++L +E +P+D + +DLR+A LG+I+GE + ++VL+ IF FCIGK
Sbjct: 395 NKAIKSLESSLHDMEAGVPIDCFEVDLRNAWEILGEITGETVDDDVLNKIFSDFCIGK 452
>gi|422823497|ref|ZP_16871685.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK405]
gi|422865417|ref|ZP_16912042.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK1058]
gi|324992824|gb|EGC24744.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK405]
gi|327489811|gb|EGF21601.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK1058]
Length = 457
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 169/477 (35%), Positives = 272/477 (57%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKNLSEVESHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++ ++DEV+ M +P+++TRED++E+ HG +L+ + GA +A+
Sbjct: 54 YGHIVDPQNQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S+L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTQLMREKTAEFETLLSNLLNTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q + + I+++NK D
Sbjct: 294 ERSKKALQEADLVLLVLNASEPLTDQDRQLLEISQDSNR--------IVLLNKTDL---- 341
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
E ++ D + + Q I +E I ++ + I + N R +
Sbjct: 342 -EEKIELDQLPTDAIKISVLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIE 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 401 KALESLQAVNQGLEMGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|422848608|ref|ZP_16895284.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK115]
gi|325689629|gb|EGD31633.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK115]
Length = 457
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 169/477 (35%), Positives = 272/477 (57%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKNLSKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++ ++DEV+ M +P+++TRED++E+ HG +L+ + GA +A+
Sbjct: 54 YGHIVDPQNQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSDLINNTRREILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTQLMREKTAEFEALLSNLLNTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q + + I+++NK D
Sbjct: 294 ERSKKALQEADLVLLVLNASELLTDQDKQLLEISQDSNR--------IVLLNKTDL---- 341
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
E ++ D + + Q I +E I ++ + I + N R +
Sbjct: 342 -EEKIELDQLPADAIKISVLHNQNINKIEERINQLFFKNAGIVEQDATYLSNARHISLIE 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 401 KALESLQAVNQGLEMGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|253755917|ref|YP_003029057.1| tRNA modification GTPase TrmE [Streptococcus suis BM407]
gi|403061919|ref|YP_006650135.1| tRNA modification GTPase TrmE [Streptococcus suis S735]
gi|251818381|emb|CAZ56209.1| tRNA modification GTPase TrmE [Streptococcus suis BM407]
gi|402809245|gb|AFR00737.1| tRNA modification GTPase TrmE [Streptococcus suis S735]
Length = 457
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 182/480 (37%), Positives = 266/480 (55%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A I VFK G SH +
Sbjct: 6 FDTITAISTPLG--EGAIGIVRLSGTDAFAIASTVFK----------GKDLATVPSHSLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG V+D G V+DEV+ M +P+++TREDV+E+ HG +L+ + GA +A+
Sbjct: 54 YGHVIDPATGQVLDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEILQLLIRQGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A A+ + G S L+ R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDVIRAKTDKAMHNAVRQLDGSLSQLINDTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ LV +K +EN L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTELVREKTLQFQALLENLLRTARRGKILREGIATAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVEKIGV
Sbjct: 234 VGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDIVEKIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD+I++ ++A + T +D LL + I+++NK D
Sbjct: 294 ERSKKALEEADLILLVLNASEPLTEQDRNLL--------AISDMANRIVLLNKTDL---- 341
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +V D + + Q I +E I ++ GL + A + N R
Sbjct: 342 -EEQIEVDQLPEDVIRISVLQNQNIDQIEEKINQLFFENAGLVEQDA---TYLSNSRHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + ++ +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEQAVQSLHAVNDGLKVGMPVDLLQVDLTRCWQILGEITGDAAPDELITQLFSQFCLGK 457
>gi|323351499|ref|ZP_08087153.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
VMC66]
gi|322121985|gb|EFX93711.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
VMC66]
Length = 457
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 169/477 (35%), Positives = 273/477 (57%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKNLSKVESHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++ ++DEV+ M +P+++TRED++E+ HG +L+ + GA +A+
Sbjct: 54 YGHIVDPQNQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S+L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTQLMREKTAEFETLLSNLLNTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q + + I+++NK D
Sbjct: 294 ERSKKALQEADLVLLVLNASEPLTDQDRQLLEISQVSNR--------IVLLNKTDL---- 341
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
E ++ D + + Q I +E I ++ + I + N R +
Sbjct: 342 -EEKIELDQLPTDVIKISVLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIE 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 401 KALESLQAVNQGLEMGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|146319108|ref|YP_001198820.1| tRNA modification GTPase TrmE [Streptococcus suis 05ZYH33]
gi|146321314|ref|YP_001201025.1| tRNA modification GTPase TrmE [Streptococcus suis 98HAH33]
gi|253752156|ref|YP_003025297.1| tRNA modification GTPase TrmE [Streptococcus suis SC84]
gi|166234827|sp|A4W2N6.1|MNME_STRS2 RecName: Full=tRNA modification GTPase MnmE
gi|166234829|sp|A4VWD1.1|MNME_STRSY RecName: Full=tRNA modification GTPase MnmE
gi|145689914|gb|ABP90420.1| Predicted GTPase [Streptococcus suis 05ZYH33]
gi|145692120|gb|ABP92625.1| Predicted GTPase [Streptococcus suis 98HAH33]
gi|251816445|emb|CAZ52081.1| tRNA modification GTPase TrmE [Streptococcus suis SC84]
Length = 457
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 182/480 (37%), Positives = 266/480 (55%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG A I VFK G SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDAFAIASTVFK----------GKDLATVPSHSLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG +D G V+DEV+ M +P+++TREDV+E+ HG +L+ + GA +A+
Sbjct: 54 YGHAIDPATGQVLDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEILQLLIRQGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A A+ + G S L+ R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDVIRAKTDKAMHNAVRQLDGSLSQLINDTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ LV +K +EN L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTELVREKTLQFQALLENLLRTARRGKILREGIATAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVEKIGV
Sbjct: 234 VGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDIVEKIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD+I++ ++A + T +D LL + I+++NK D
Sbjct: 294 ERSKKALEEADLILLVLNASEPLTEQDRNLL--------AISDMANRIVLLNKTDL---- 341
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +V D + + Q I +E I ++ GL + A + N R
Sbjct: 342 -EEQIEVDQLPEDVIRISVLQNQNIDQIEEKINQLFFENAGLVEQDA---TYLSNSRHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + ++ +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEQAVQSLHAVNDGLKVGMPVDLLQVDLTRCWQILGEITGDAAPDELITQLFSQFCLGK 457
>gi|392428499|ref|YP_006469510.1| tRNA modification GTPase [Streptococcus intermedius JTH08]
gi|419777515|ref|ZP_14303427.1| tRNA modification GTPase TrmE [Streptococcus intermedius SK54]
gi|383844995|gb|EID82405.1| tRNA modification GTPase TrmE [Streptococcus intermedius SK54]
gi|391757645|dbj|BAM23262.1| tRNA modification GTPase [Streptococcus intermedius JTH08]
Length = 457
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 172/477 (36%), Positives = 273/477 (57%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTESFAIAQKIFK----------GKDLSTVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++DEV+ M +P+++TREDV+E+ HG +L+ + GA +A+
Sbjct: 54 YGHIVDPAKDEILDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEILQLVIREGARIAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE + +I AK+ A + A+ + G S L+ ++R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAIMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + + L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTKLLCEKTADFEELLTQLLKTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIR+TDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLCEDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q +T IL++NK D
Sbjct: 294 ERSKKALKDADLVLLVLNANEPLTEQDHKLLEISQ--------NTNRILLLNKTDL---- 341
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
+E + +D + A+ Q I +E I ++ + I + N R +
Sbjct: 342 -DEKIETTQLPDDFIKISALQNQNIDKIEERINQLFFENAGIAEQDATYLSNSRHISLIE 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + ++ +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 401 KAIESLHAVNEGLDLGMPVDLVQVDLTQTWRILGEITGDAAPDELITQLFSQFCLGK 457
>gi|153815417|ref|ZP_01968085.1| hypothetical protein RUMTOR_01652 [Ruminococcus torques ATCC 27756]
gi|145847276|gb|EDK24194.1| tRNA modification GTPase TrmE [Ruminococcus torques ATCC 27756]
Length = 465
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 177/485 (36%), Positives = 283/485 (58%), Gaps = 38/485 (7%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T G +GIVR+SG AV + R+++ KK SH + YG
Sbjct: 5 TIAAIST--GMTNSGIGIVRISGEEAVLVADRIYRGKKK---------LCEVKSHTINYG 53
Query: 154 VVLDRH--------GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAG 205
++DR V+DEVL M AP ++T ED VE+ CHG +++VL L+ G
Sbjct: 54 YIVDREISSAEKKSEEVIDEVLVTVMKAPGTFTGEDTVEINCHGGTFVVKKVLELVLKNG 113
Query: 206 ATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAK 265
A+ A+PGEFT RAFLNG++DLSQAE V +I++++ A ++++ ++G + +R K
Sbjct: 114 ASPAEPGEFTKRAFLNGKMDLSQAEAVIDVINSENEYALQSSVSQLKGSVKKKINDIRKK 173
Query: 266 CIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMS----QDVENALETANYDKLLQSGLQI 321
I IE LD + ++++ D + + + Q++E + +A+ ++++ G++
Sbjct: 174 IIYHTAFIETALD---DPEHISVDGYSDTLRSSAEEIIQELERLIHSADDGRVIKEGIKT 230
Query: 322 AIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDD 381
IVG+PN GKSSLLN + ERAIVT+I GTTRDV+E ++ + G+ + ++DTAGIR+T+D
Sbjct: 231 VIVGKPNAGKSSLLNVLAGHERAIVTDIEGTTRDVLEETIKLGGLNLNVVDTAGIRQTED 290
Query: 382 IVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINK 441
++EKIGV+++ A AD+II V A D +++N I S+KKS I+++NK
Sbjct: 291 LIEKIGVDKALEYAETADLIIYVVDASRSLDENDEKIINMI-SDKKS-------IVLLNK 342
Query: 442 --IDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVN 499
ID SA + KV N + A +GI+DLE + ++ I + + N
Sbjct: 343 SDIDTVISAEHIKEKVSNI--PIISISAKEERGIKDLEDKVKEMFLKGDISFNDQVYISN 400
Query: 500 QRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGK 559
RQ L+ E++ ++ SI++ +P DF++IDL DA +LG I+G + E++++ IF K
Sbjct: 401 VRQKNALLEALESMKKVIRSIDDNMPEDFYSIDLMDAYESLGYITGNSVGEDLINEIFSK 460
Query: 560 FCIGK 564
FC+GK
Sbjct: 461 FCMGK 465
>gi|423068243|ref|ZP_17057031.1| tRNA modification GTPase mnmE [Streptococcus intermedius F0395]
gi|355367134|gb|EHG14847.1| tRNA modification GTPase mnmE [Streptococcus intermedius F0395]
Length = 457
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 172/477 (36%), Positives = 272/477 (57%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTESFAIAQKIFK----------GKDLSTVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++DEV+ M +P+++TREDV+E+ HG +L+ + GA +A+
Sbjct: 54 YGHIVDPAKDEILDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEILQLVIREGARIAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE + +I AK+ A + A+ + G S L+ ++R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAIMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + + L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTKLLCEKTADFEELLTQLLKTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIR+TDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLCEDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q T IL++NK D
Sbjct: 294 ERSKKALKDADLVLLVLNANEPLTEQDHKLLEISQ--------DTNRILLLNKTDL---- 341
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
+E ++ D + A+ Q I +E I ++ + I + N R +
Sbjct: 342 -DEKIEISQLPADFIKISALQNQNIDKIEERINQLFFENAGIAEQDATYLSNSRHISLIE 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + ++ +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 401 KAIESLHAVNEGLDLGMPVDLVQVDLTQTWRILGEITGDAAPDELITQLFSQFCLGK 457
>gi|317500879|ref|ZP_07959091.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 8_1_57FAA]
gi|316897759|gb|EFV19818.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 8_1_57FAA]
Length = 465
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 177/485 (36%), Positives = 283/485 (58%), Gaps = 38/485 (7%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T G +GIVR+SG AV + R+++ KK SH + YG
Sbjct: 5 TIAAIST--GMTNSGIGIVRISGEEAVLVADRIYRGKKK---------LCEVKSHTINYG 53
Query: 154 VVLDRH--------GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAG 205
++DR V+DEVL M AP ++T ED VE+ CHG +++VL L+ G
Sbjct: 54 YIVDREISSAEKKSEEVIDEVLVTVMKAPGTFTGEDTVEINCHGGTFVVKKVLELVLKNG 113
Query: 206 ATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAK 265
A+ A+PGEFT RAFLNG++DLSQAE V +I++++ A ++++ ++G + +R K
Sbjct: 114 ASPAEPGEFTKRAFLNGKMDLSQAEAVIDVINSENEYALQSSVSQLKGSVKKKINDIREK 173
Query: 266 CIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMS----QDVENALETANYDKLLQSGLQI 321
I IE LD + ++++ D + + + Q++E + +A+ ++++ G++
Sbjct: 174 IIYHTAFIETALD---DPEHISVDGYSDTLRSSAEEIIQELERLIHSADDGRVIKEGIKT 230
Query: 322 AIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDD 381
IVG+PN GKSSLLN + ERAIVT+I GTTRDV+E ++ + G+ + ++DTAGIR+T+D
Sbjct: 231 VIVGKPNAGKSSLLNVLAGHERAIVTDIEGTTRDVLEETIKLGGLNLNVVDTAGIRQTED 290
Query: 382 IVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINK 441
++EKIGV+++ A AD+II V A D +++N I S+KKS I+++NK
Sbjct: 291 LIEKIGVDKALEYAETADLIIYVVDASRSLDENDEKIINMI-SDKKS-------IVLLNK 342
Query: 442 --IDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVN 499
ID SA + KV N + A +GI+DLE + ++ I + + N
Sbjct: 343 SDIDTVISAEHIKEKVSNI--PIISISAKEERGIKDLEDKVKEMFLKGDISFNDQVYISN 400
Query: 500 QRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGK 559
RQ L+ E++ ++ SI++ +P DF++IDL DA +LG I+G + E++++ IF K
Sbjct: 401 VRQKNALLEALESMKKVIRSIDDNMPEDFYSIDLMDAYESLGYITGNSVGEDLINEIFSK 460
Query: 560 FCIGK 564
FC+GK
Sbjct: 461 FCMGK 465
>gi|401683031|ref|ZP_10814920.1| tRNA modification GTPase TrmE [Streptococcus sp. AS14]
gi|400183713|gb|EJO17964.1| tRNA modification GTPase TrmE [Streptococcus sp. AS14]
Length = 457
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 168/477 (35%), Positives = 271/477 (56%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKNLSKVESHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++ ++DEV+ M +P+++TRED++E+ HG +L+ + GA +A+
Sbjct: 54 YGHIVDPQNQEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S+L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTQLMREKTAEFETLLSNLLNTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q + + I+++NK D
Sbjct: 294 ERSKKALHEADLVLLVLNASEPLTDQDRQLLEISQDSNR--------IVLLNKTDLEEKI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
+ D + + Q I +E I ++ + I + N R +
Sbjct: 346 ELDLLPT-----DVIKISVLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIE 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 401 KALESLQAVNQGLEMGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|422884111|ref|ZP_16930560.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK49]
gi|332360804|gb|EGJ38610.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK49]
Length = 457
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 169/480 (35%), Positives = 275/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKNLSKVESHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++ ++DEV+ M +P+++TRED++E+ HG +L+ + GA +A+
Sbjct: 54 YGHIVDPQNQEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S+L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + N L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTKLMREKTAEFEALLSNLLDTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q + + I+++NK D
Sbjct: 294 ERSKKALQEADLVLLVLNASEPLTDQDRQLLEISQDSNR--------IVLLNKTDL---- 341
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E ++ D + + Q I +E I ++ G+ + A + N R
Sbjct: 342 -EEKIELDQLPADAIKISVLHNQNIDKIEERINQLFFENAGIFEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +D+ L +I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKALESLQAVNQGLEMGMPVDLLQVDMTRTWEILSEITGDAAPDELITQLFSQFCLGK 457
>gi|77406399|ref|ZP_00783459.1| tRNA modification GTPase TrmE [Streptococcus agalactiae H36B]
gi|77174990|gb|EAO77799.1| tRNA modification GTPase TrmE [Streptococcus agalactiae H36B]
Length = 458
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 178/479 (37%), Positives = 274/479 (57%), Gaps = 37/479 (7%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T +G GA+GIVR+SG A+ I ++++ G SH + YG
Sbjct: 9 TIAAISTPLG--EGAIGIVRISGTDALKIASKIYR----------GKDLSAIQSHTLNYG 56
Query: 154 VVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D N ++DEV+ MLAP+++TREDV+E+ HG +L+ L GA +A+PG
Sbjct: 57 HIVDPDKNEILDEVMLGVMLAPKTFTREDVIEINTHGGIAVTNEILQLILRHGARMAEPG 116
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DL+QAE V LI AK+ A D A+ + G +L+ + R + + L +
Sbjct: 117 EFTKRAFLNGRVDLTQAEAVMDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQEILNTLAQ 176
Query: 273 IEARLDFD--DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+E +D+ D++ + L+ +K +EN L TA K+L+ GL AI+GRPNVG
Sbjct: 177 VEVNIDYPEYDDVEEMTTTLMREKTQEFQALMENLLRTARRGKILREGLSTAIIGRPNVG 236
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIR+TDDIVEKIGVER
Sbjct: 237 KSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGVER 296
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS- 449
S+ AD++++ +++ + T +D LL + S ES+ I+++NK D
Sbjct: 297 SKKALEEADLVLLVLNSSEPLTLQDRSLL------ELSKESNR--IVLLNKTDLPQKIEV 348
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCEQ 505
NE K + + + + I +E I I G+ + A + N R
Sbjct: 349 NELPK------NVIPISVLENENIDKIEERINDIFFDNAGMVEHDA---TYLSNARHISL 399
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 400 IEKAVDSLKAVNEGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 458
>gi|425737852|ref|ZP_18856122.1| tRNA modification GTPase TrmE [Staphylococcus massiliensis S46]
gi|425481005|gb|EKU48167.1| tRNA modification GTPase TrmE [Staphylococcus massiliensis S46]
Length = 459
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 175/478 (36%), Positives = 273/478 (57%), Gaps = 26/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TI +I T +G GA+GIVR+SG AV+I +++K K+ K +H +
Sbjct: 3 LDTITSISTPMG--EGAIGIVRMSGQDAVEIADKLYKGKKQLKD---------VQTHTIN 51
Query: 152 YGVVLDRHGNVVDEVLAVPML-APRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + V E + V +L APR++TRED+VE+ CHG + + RVL + GA +A+
Sbjct: 52 YGHIIDPETDEVVEEVMVSVLRAPRTFTREDIVEINCHGGILTINRVLELTMTHGARIAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGE+T RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+L
Sbjct: 112 PGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSELIKKERQTILEIL 171
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+IE +D+ D++ ++ + A+ ++++ LET K+++ GL IVG+PN
Sbjct: 172 AQIEVNIDYPEYDDVEDATSEFLVTQSKAIKKEIDALLETGQQGKIMREGLSTVIVGKPN 231
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIR+T+DIVE+IGV
Sbjct: 232 VGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVERIGV 291
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD+I+ ++ + T ED +L +++ I++INK D +
Sbjct: 292 ERSRKALSEADLILFVLNYNEALTEEDRKLYEVVKNEDA--------IVIINKTDLEQNL 343
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ ++V D + T + +GI +LE I + + + + N R L
Sbjct: 344 --DLDEVKRMIGDMPLIETSMLEQRGIDELEIQIRDLFFGGDVQSQDMTYVSNSRHISLL 401
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++ + E +P+D IDL LG+I GE SEE++ +F +FC+GK
Sbjct: 402 KQARNSIQDAIDAAEMGVPMDMVQIDLTRTWEILGEIIGESASEELIDQLFSQFCLGK 459
>gi|418963343|ref|ZP_13515182.1| tRNA modification GTPase TrmE [Streptococcus anginosus subsp.
whileyi CCUG 39159]
gi|383343458|gb|EID21642.1| tRNA modification GTPase TrmE [Streptococcus anginosus subsp.
whileyi CCUG 39159]
Length = 457
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 172/477 (36%), Positives = 272/477 (57%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKDLSTVASHTLN 53
Query: 152 YGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N ++DEV+ M +P+++TREDV+E+ HG +L+ + GA +A+
Sbjct: 54 YGHIIDPEKNEILDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEILQLAIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE + +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAIMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRLEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + + L+ A K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTKLLREKTAEFEKLLSQLLKIARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN ++AIVT+IAGTTRDVIE V + GVP+ L+DTAGIR+TDDIVE+IGV
Sbjct: 234 VGKSSLLNNLLHEDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q T IL++NK D
Sbjct: 294 ERSKKALQDADLVLLVLNASEPLTEQDRKLLEISQ--------DTNRILLLNKTDLEEKI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
E +++ ++F + + Q I +E I ++ + I + N R +
Sbjct: 346 --EVDQLPDNF---IKISVLQNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIE 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + ++ +P+D +DL LG+I+G+ +E++S +F +FC+GK
Sbjct: 401 KAVESLHAVNEGLDLGMPVDLVQVDLTRTWEILGEITGDAAPDELISQLFSQFCLGK 457
>gi|259502137|ref|ZP_05745039.1| tRNA modification GTPase TrmE [Lactobacillus antri DSM 16041]
gi|259169950|gb|EEW54445.1| tRNA modification GTPase TrmE [Lactobacillus antri DSM 16041]
Length = 463
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 181/475 (38%), Positives = 269/475 (56%), Gaps = 23/475 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T +G G + I+R+SGP AV + ++++ K R SH + YG
Sbjct: 8 TIAAISTPVG--EGGISIIRISGPDAVAVAKQLYRGSKD---------LARVASHTINYG 56
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D G VDEV+ M AP +YT EDV+E+ CHG + R+L+ L GA +A+PG
Sbjct: 57 HIVDPETGTEVDEVMVSVMRAPHTYTCEDVIEINCHGGLLATNRILQLVLSYGARMAEPG 116
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQ+E V LI AK+ + AL + G S L+ +R +++L +
Sbjct: 117 EFTKRAFLNGRIDLSQSEAVMDLIRAKTDKSMKVALNQLDGDLSRLIRRLRKDILDVLAQ 176
Query: 273 IEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+E +D+ D + + ++ +K + Q ++ L+TA K+L+ GL AI+GRPNVG
Sbjct: 177 VEVNIDYPEYDAVEEMTTKMLKEKAVDIRQRIQALLKTAKQGKVLREGLATAIIGRPNVG 236
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLN ++AIVT++AGTTRDVIE V V GVP+ L+DTAGIR+TDD VEKIGVER
Sbjct: 237 KSSLLNTLLHEDKAIVTDVAGTTRDVIEEYVNVDGVPLKLIDTAGIRDTDDTVEKIGVER 296
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S+ AD+I++ + + T+ED ELL Q ++ I+++NK D
Sbjct: 297 SKKALDAADLILLLIDSSAPLTAEDRELLTVTQGKQR--------IVILNKTDLPRQVDL 348
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCEQLMRT 509
K + + + T V +G+ L I K+ I + V N R L +
Sbjct: 349 AELKQLTAGDTVIETSIVNHEGMDQLGQRISKMFFNEGIESSQSNVMVTNARHIGLLHQA 408
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL + I++ +P+D ID+ LG+I+G+ +E+L +F +FC+GK
Sbjct: 409 NAALNDVLKGIDDGMPVDLVQIDMTRCWDLLGEITGDSYQDELLDQLFSQFCLGK 463
>gi|335049909|ref|ZP_08542892.1| tRNA modification GTPase TrmE [Megasphaera sp. UPII 199-6]
gi|333762038|gb|EGL39554.1| tRNA modification GTPase TrmE [Megasphaera sp. UPII 199-6]
Length = 459
Score = 288 bits (738), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 176/483 (36%), Positives = 273/483 (56%), Gaps = 36/483 (7%)
Query: 91 TFSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFK-----PVKKKKKKSSGSGSW 143
T TIAAIVT PPG VGI+R+SG A + +F+ P+ +++ KS
Sbjct: 4 TNETIAAIVT----PPGESGVGIIRISGDQAFSVGDVLFRSASAVPLAQRRDKS------ 53
Query: 144 RPTSHVVEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLE 203
V+YG + +R+G V+DEVL + M P SYT EDV+E+QCHG ++++L LE
Sbjct: 54 ------VQYGHITERNGAVIDEVLVLIMKGPHSYTAEDVLEIQCHGGIKVIQKILTLVLE 107
Query: 204 AGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVR 263
G LA+PGEFT RAF+NGR+DL+QAE V +I AKS A A+ ++G S +V +
Sbjct: 108 QGVRLARPGEFTERAFVNGRIDLAQAEAVMDIIQAKSEAGVTRAVRQLEGKLSEVVNDML 167
Query: 264 AKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIA 322
+T +E +D+ ++++ + + + + M +EN L A K+++ G+ +
Sbjct: 168 QNLTTFITRLEVTVDYPEEDLEEIEVPDIAGSLQEMRDALENMLGRARTGKMIRDGITVV 227
Query: 323 IVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDI 382
I G PN GKSSLLN + ++AIVTE+ GTTRDVIEA +T+ G+P L+DTAGIR+TDD
Sbjct: 228 INGLPNAGKSSLLNRLLEEDKAIVTEVPGTTRDVIEAWITLSGIPFCLVDTAGIRKTDDK 287
Query: 383 VEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKI 442
VE+IGV ++ + AD+I++ + E+ LL I+ P +++NK
Sbjct: 288 VERIGVAKARSYMDTADIILLVLDGSHRLQEEEKALLQEIKDK--------PAWVILNKS 339
Query: 443 DCAPSASNEWNKVGNSFNDHVFT-CAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQR 501
D +S K ++ V + A TG+GI+ L+ A+++ V G N R
Sbjct: 340 DV---SSRMDKKEIEAYGFPVLSLSARTGKGIEGLQKALLQYVLSSGWNTGADVLLANVR 396
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
E + K A+ R +++ LP+D ID+R+A LG I+G+ + +++ IF +FC
Sbjct: 397 HIEAARQAKAAMDRALHTLQAGLPIDLAIIDIREAWEMLGDITGQHVRADIVKEIFSRFC 456
Query: 562 IGK 564
+GK
Sbjct: 457 LGK 459
>gi|260887478|ref|ZP_05898741.1| tRNA modification GTPase TrmE [Selenomonas sputigena ATCC 35185]
gi|330840116|ref|YP_004414696.1| tRNA modification GTPase mnmE [Selenomonas sputigena ATCC 35185]
gi|260862765|gb|EEX77265.1| tRNA modification GTPase TrmE [Selenomonas sputigena ATCC 35185]
gi|329747880|gb|AEC01237.1| tRNA modification GTPase mnmE [Selenomonas sputigena ATCC 35185]
Length = 459
Score = 288 bits (738), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 181/478 (37%), Positives = 269/478 (56%), Gaps = 31/478 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI+AI T++G G VGIVRLSG A++ R+F +K +G+ YG
Sbjct: 6 TISAIATAVG--EGGVGIVRLSGASAIETASRMFCAAGARKLADAGARDLL-------YG 56
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
V+ G +VDE L + M AP SYT+EDVVELQCHG V LR VL GA A+ GE
Sbjct: 57 TVVREDGRLVDEALCLVMRAPHSYTKEDVVELQCHGGAVSLREVLALTYRHGARAAERGE 116
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGRLDL++A+ V ++ AK+ + A + G FS + S+R + LL +
Sbjct: 117 FTKRAFLNGRLDLAEAQAVMDVVQAKTEKGLEMAAGHLAGHFSERIRSMREDILALLAHL 176
Query: 274 EARLDFDDE-MPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
EA +DF +E + + + +K+ A+ + ++TA+ ++L+ GL+ AIVGRPNVGKS
Sbjct: 177 EAVIDFPEEGVDEIVVEEAREKVSALHASLRRIVQTAHTGRILRDGLETAIVGRPNVGKS 236
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNA + +RAIVT++ GTTRD IE + GVP+ ++DTAGIR T+D VE+IGVE++
Sbjct: 237 SLLNALLREDRAIVTDVPGTTRDTIEEYADIGGVPLRIIDTAGIRTTEDAVERIGVEKAR 296
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKK---STESSTPMILVINKIDCAPSAS 449
A A +++ +ED E+L ++ T+S P +L ++
Sbjct: 297 AHVKSAALVLALFDGSRPLEAEDEEILALLEGKDALIVVTKSDLPRVLDTERL------- 349
Query: 450 NEWNKVGNSFNDHVFTCAVTG---QGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
N V H+ +T +GI L AI++ V + +G + + R L
Sbjct: 350 --QNLV------HLPLIEITTKEEEGISPLAAAILEKVYDGEERSGEGSFVADLRTKNLL 401
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ L S++++ L LDF +IDLR + LG+I+GE + ++VL IF +FC+GK
Sbjct: 402 EAAADHLTAAISTMDQGLGLDFISIDLRSSLEKLGEITGETVGDDVLDEIFSRFCVGK 459
>gi|430751870|ref|YP_007214778.1| tRNA modification GTPase TrmE [Thermobacillus composti KWC4]
gi|430735835|gb|AGA59780.1| tRNA modification GTPase TrmE [Thermobacillus composti KWC4]
Length = 459
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 180/475 (37%), Positives = 271/475 (57%), Gaps = 24/475 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++G + ++R+SGP A++ P + K +G +H V+Y
Sbjct: 5 TIAAIATAVG--ESGIAVIRISGPSAIEAAA----PYVRAK-----TGLKDAATHTVQYA 53
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT-LAQP 211
++D G VDE L M APRS+T EDVVE+ HG V +RRVL L G LA+P
Sbjct: 54 KIVDPATGEAVDEALVTVMRAPRSFTAEDVVEISVHGGIVPVRRVLDLLLAGGGIRLAEP 113
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT RAF+NGR+DL+QAE V LI +KS A AL ++G S + +R + IELL
Sbjct: 114 GEFTRRAFVNGRIDLAQAEAVMDLIRSKSERAMKVALKQVEGALSRKIGELRQRLIELLA 173
Query: 272 EIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+E +D+ + ++ L + ++ + ++ L++AN ++L+ G+ AIVGRPNVG
Sbjct: 174 HLEVNIDYPEHDVEELTSAFIRERSGEVLAEIRQLLKSANEGRILREGIMTAIVGRPNVG 233
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLN + +ERAIVT+I GTTRDVIE VTV G+P+ LLDTAGIRET D+VE+IGVER
Sbjct: 234 KSSLLNLLAGTERAIVTDIPGTTRDVIEEYVTVSGIPLRLLDTAGIRETFDVVERIGVER 293
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S + AD++++ ++ + +D LL + + ++++NK D P+ +
Sbjct: 294 SRSALTDADLLLIVLNRSEPLHEDDRTLLGQAAGRQA--------VVILNKSDL-PAKLD 344
Query: 451 EWNKVGNSFNDHVFTCAVT-GQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
E + +V G G+ +L AI + ++ G + N R L +
Sbjct: 345 EAEVRKLLPGTAIVPMSVKEGLGMDELGQAIADLFFGGKLEGGEAAYVSNARHAALLKQA 404
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++ALV S + +P+D ID+R A LG+I+G+ E ++ IF +FC+GK
Sbjct: 405 EQALVDAIESTDAGVPIDIVQIDVRTAWERLGEITGDTAGESLIDQIFSQFCLGK 459
>gi|357056596|ref|ZP_09117635.1| tRNA modification GTPase TrmE [Clostridium clostridioforme
2_1_49FAA]
gi|355379961|gb|EHG27108.1| tRNA modification GTPase TrmE [Clostridium clostridioforme
2_1_49FAA]
Length = 459
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 179/483 (37%), Positives = 268/483 (55%), Gaps = 40/483 (8%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T G +GIVR+SG A ++ +F+ K ++ S SH V YG
Sbjct: 5 TIAAIAT--GMSNSGIGIVRISGEEAFSVIDSIFRNRKGERVSLS-----LAQSHTVHYG 57
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ D V DE L + M P SYT ED VE+ CHG + +RR+L L AGA A+PGE
Sbjct: 58 YIYDGDEKV-DEALVIIMKGPHSYTAEDTVEIDCHGGVLMVRRILETVLHAGARTAEPGE 116
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGRLDLSQAE V +I A + A ++++ + G S+ + +R++ + + I
Sbjct: 117 FTKRAFLNGRLDLSQAEAVADVIHATNEYALKSSVSQLSGSVSNKIKELRSQILYQIAFI 176
Query: 274 EARLDFDDEMPPLNLNL------VMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
E+ LD P +++L +MD + M + L +A+ + + G++ I+G+P
Sbjct: 177 ESALD-----DPEHISLDGYGSQLMDALAPMIDEARKLLLSADDGRFMSEGVKTVILGKP 231
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
N GKSSL+N ERAIVTE+AGTTRD +E + + G+ + ++DTAGIR+T+D+VEKIG
Sbjct: 232 NAGKSSLMNVLLGEERAIVTEVAGTTRDTLEEHIYLQGISLNVVDTAGIRDTEDVVEKIG 291
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
V+R+ A AD+II V D E+++ I+ K I+++NK D
Sbjct: 292 VDRALKAARDADLIIYVVDGSRPLDESDREIMDFIRGRKT--------IVLLNKSDLDLE 343
Query: 448 ASNE------WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQR 501
E +KV + A QGI+ LE I K+ + + + N R
Sbjct: 344 VGTEELEQLCGHKV-------IPVSAKEEQGIELLEQEIKKLFYHGDLSFNDQVYITNAR 396
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
E L + E+L+ +K S+E+ +P DF++IDL +A LG I GE + ++V++ IF KFC
Sbjct: 397 HKEALEQCLESLLMVKGSVEDGMPEDFYSIDLMNAYEQLGFIIGESVDDDVVNEIFAKFC 456
Query: 562 IGK 564
+GK
Sbjct: 457 MGK 459
>gi|299143471|ref|ZP_07036551.1| tRNA modification GTPase TrmE [Peptoniphilus sp. oral taxon 386
str. F0131]
gi|298517956|gb|EFI41695.1| tRNA modification GTPase TrmE [Peptoniphilus sp. oral taxon 386
str. F0131]
Length = 458
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 177/475 (37%), Positives = 277/475 (58%), Gaps = 25/475 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI+AI T+ G +GIVR+SG +++I +F P+ K S + + YG
Sbjct: 5 TISAISTATG--EAGIGIVRMSGENSIEIANSIFVPMGSKTLIESDN-------RTMVYG 55
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ D + ++DEVL V ML P +YTRE+VVE+ CHG + +RR+L L+ GA LA+PGE
Sbjct: 56 HIYD-NDKLIDEVLIVKMLMPHTYTRENVVEIYCHGGIISVRRILDLTLDRGARLAEPGE 114
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGRLDL+QAE V +I +KS + + +L ++G S + +R + +++ I
Sbjct: 115 FTKRAFLNGRLDLAQAEAVIDIIKSKSDISYNMSLRQLEGSLSGRIADIRERVMKMTALI 174
Query: 274 EARLDF-DDEMPPLNL-NLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
A +DF +DE+ +L D +H + + + ++ +N KLL+ G+ I+G+PNVGK
Sbjct: 175 VANIDFPEDEIVEATYSSLREDAVHVV-ESLNELIKNSNRGKLLRDGINTVILGKPNVGK 233
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLN + ERAIVT+I GTTRDVI V + G+ + + DTAGIR+TDD VE+IGV+ +
Sbjct: 234 SSLLNGLLRDERAIVTDIPGTTRDVITDFVNLDGILLKITDTAGIRDTDDTVERIGVDLA 293
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
+ G+D+II + ++D E++ R+ NKKS I+++NK D S +
Sbjct: 294 KKSIDGSDLIIAIFDTSRPFDNDDYEII-RLIGNKKS-------IILLNKSDLDKKVSKD 345
Query: 452 WNKVGNSFNDHVF-TCAVTGQG-IQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+ + D + +V G+G I +E I ++ ++ + N R L
Sbjct: 346 --DIEDLVKDRDYLDISVVGEGEILRIEEKIKEMFFDGEVKENSTLYVNNLRHIRALKAA 403
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
KE++ + + IE E+ LD ++L D +LG+I+GE +E+VL +F +FCIGK
Sbjct: 404 KESMKYVLNDIENEMFLDLLEVNLEDVLSSLGEITGETSTEDVLDKVFSEFCIGK 458
>gi|322385140|ref|ZP_08058787.1| thiophene and furan oxidation protein ThdF [Streptococcus cristatus
ATCC 51100]
gi|321270764|gb|EFX53677.1| thiophene and furan oxidation protein ThdF [Streptococcus cristatus
ATCC 51100]
Length = 520
Score = 288 bits (736), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 176/504 (34%), Positives = 286/504 (56%), Gaps = 44/504 (8%)
Query: 69 TLVFKKDERLVADNGESEEKAGTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFK 128
+L++K ER+ E F TIAAI T +G GA+GIVRLSG + I ++F+
Sbjct: 53 SLLYKLFERIYMITRE-------FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFR 103
Query: 129 PVKKKKKKSSGSGSWRPTSHVVEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQC 187
G + SH + YG ++D ++ ++DEV+ M +P+++TRED++E+
Sbjct: 104 ----------GKDLSKVASHTLNYGHIVDPQNQEILDEVMVGAMRSPKTFTREDIIEINT 153
Query: 188 HGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAA 247
HG +L+ + GA LA+PGEFT RAFLNGR+DL+QAE V +I AK+ A + A
Sbjct: 154 HGGIAVTNEILQLAIREGARLAEPGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNNA 213
Query: 248 LAGIQGGFSSLVTSVRAKCIELLTEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENA 305
+ + G S L+ S R + + L ++E +D+ D++ ++ +K Q + +
Sbjct: 214 VKQLDGSLSDLINSTRQEILNTLAQVEVNIDYPEYDDVEEATTEIIREKTLEFEQLLTHL 273
Query: 306 LETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG 365
L+TA K+L+ G+ AI+GRPNVGKSSLLN + ++AIVT+I GTTRDVIE V + G
Sbjct: 274 LKTARRGKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNING 333
Query: 366 VPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSN 425
VP+ L+DTAGIRETDD+VE+IGVERS+ AD++++ ++A + T +D +LL Q +
Sbjct: 334 VPLKLIDTAGIRETDDLVEQIGVERSKKALQEADLVLLVLNASEPLTDQDKQLLEISQDS 393
Query: 426 KKSTESSTPMILVINKIDCAPSASNEWNKV-GNSFNDHVFTCAVTGQGIQDLETAIMKIV 484
+ I+++NK D E +++ N+ + + Q I +E I ++
Sbjct: 394 NR--------IVLLNKTDLEEKI--ELDQLPANA----IKISVLHNQNIDKIEDRINQLF 439
Query: 485 ----GLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALAL 540
G+ + A + N R + + E+L + +E +P+D +DL L
Sbjct: 440 FENAGILEQDAT---YLSNARHISLIKKAVESLQAVNQGLELGMPVDLLQVDLTRTWEIL 496
Query: 541 GQISGEDISEEVLSNIFGKFCIGK 564
G+I+G+ +E+++ +F +FC+GK
Sbjct: 497 GEITGDAAPDELITQLFSQFCLGK 520
>gi|312867712|ref|ZP_07727918.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis F0405]
gi|311096775|gb|EFQ55013.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis F0405]
Length = 457
Score = 288 bits (736), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 171/480 (35%), Positives = 272/480 (56%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKELSKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPDKDEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQLVIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ ++ +K + N L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTEIIREKTREFEALLTNLLKTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+I GTTRDVIE V + GVP+ L+DTAGIRET+DI+E+IGV
Sbjct: 234 VGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAGIRETEDILEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q + + I+++NK+D
Sbjct: 294 ERSKKALKEADLVLLVLNASEPLTDQDRQLLEISQDSNR--------IILLNKVDLP--- 342
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E ++ D++ + Q I +E I + GL + A + N R
Sbjct: 343 --EKIEIDQLPEDYIKISVLKNQNIDQIEDRINALFFENAGLVEQDA---TYLSNARHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + + +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEKAVESLQAVNEGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|167766870|ref|ZP_02438923.1| hypothetical protein CLOSS21_01387 [Clostridium sp. SS2/1]
gi|317499289|ref|ZP_07957562.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 5_1_63FAA]
gi|167711418|gb|EDS21997.1| tRNA modification GTPase TrmE [Clostridium sp. SS2/1]
gi|291558409|emb|CBL37209.1| tRNA modification GTPase trmE [butyrate-producing bacterium SSC/2]
gi|316893458|gb|EFV15667.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 5_1_63FAA]
Length = 458
Score = 288 bits (736), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 174/485 (35%), Positives = 270/485 (55%), Gaps = 43/485 (8%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
+TIAAI T + +GI+R+SG A+DI+ + K K ++ Y
Sbjct: 4 NTIAAIATPM--TNSGIGIIRISGDEALDIIEK------VFKPKKKDKKIKDVKTYTAHY 55
Query: 153 GVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
G V D ++DE + + M P SYT EDVVE+ CHG V +++VL A +AGAT A+PG
Sbjct: 56 GHVYDE-STLLDECIVLVMKGPHSYTAEDVVEINCHGGVVVMKKVLEAVFKAGATPAEPG 114
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLS+AE V LI +K+ A +L ++G +T +R + I +
Sbjct: 115 EFTKRAFLNGRIDLSEAEAVMDLIQSKNEFAMSTSLKQLEGALGKKITEIRKQIIHSVAF 174
Query: 273 IEARLD---------FDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
IE+ LD F DE+ D++ + + LE A+ ++L+ G+Q I
Sbjct: 175 IESALDDPEHYSVDGFSDELK--------DQVEVIINQLNEFLENADNGRILKEGIQTVI 226
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383
VG+PN GKSS+LN ERAIVT+IAGTTRD +E S+ + G+P+ ++DTAGIR+T+D++
Sbjct: 227 VGKPNAGKSSVLNVLLGEERAIVTDIAGTTRDTLEESIQIKGIPLNIIDTAGIRDTNDLI 286
Query: 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443
EKIGV++++ + AD+++ V D T +D E++ I+ + I+++NK D
Sbjct: 287 EKIGVDKAKDLLTKADLVLYVVDTSDPLTKDDEEIMELIEDKQT--------IVLLNKAD 338
Query: 444 CAPSASNEWNKVGN----SFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVN 499
++ KV + F V A GI++L I I + + N
Sbjct: 339 L-----DQVVKVSDLKEKGFEQIVQISAKEQTGIEELYQLIQDIFFEGHVSFNDEIYLTN 393
Query: 500 QRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGK 559
R ++ ++L + SIE+ +P DF++IDL DA LG I+GE + E++++ IF +
Sbjct: 394 MRHKTEVSEALKSLAMVLQSIEDGMPEDFFSIDLLDAYEHLGFITGESVGEDLVNEIFAE 453
Query: 560 FCIGK 564
FC+GK
Sbjct: 454 FCMGK 458
>gi|283797196|ref|ZP_06346349.1| tRNA modification GTPase TrmE [Clostridium sp. M62/1]
gi|291075154|gb|EFE12518.1| tRNA modification GTPase TrmE [Clostridium sp. M62/1]
gi|295090272|emb|CBK76379.1| tRNA modification GTPase trmE [Clostridium cf. saccharolyticum K10]
gi|295115469|emb|CBL36316.1| tRNA modification GTPase trmE [butyrate-producing bacterium SM4/1]
Length = 458
Score = 287 bits (735), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 174/476 (36%), Positives = 274/476 (57%), Gaps = 26/476 (5%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
TIAAI S G +G+VR+SG AV + R+F+ K +G + + Y
Sbjct: 5 DTIAAI--STGMTNSGIGVVRISGEDAVKVADRIFR-------KPNGRKLSEEKTFTIHY 55
Query: 153 GVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
G + D + ++DEVL + M PRSYT ED VE+ CHG + +R++L ++ GA LA+PG
Sbjct: 56 GHIYDEN-ELIDEVLVMLMRGPRSYTAEDTVEIDCHGGVLVMRKILETVVKNGARLAEPG 114
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQAE V +I+AK+ A +++ + G S V +R K I +
Sbjct: 115 EFTKRAFLNGRIDLSQAEAVIDVINAKNDYALKSSVNQLNGAMSRKVKELREKLIYEIAF 174
Query: 273 IEARLDFDDEMPPLNL--NLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
IE+ LD D E L ++ +++ + Q++E L TA+ ++++ G++ I+G+PN G
Sbjct: 175 IESALD-DPEHISLEGYPEILHERLIPIKQEIEKLLATADNGRVVREGVKTVILGKPNAG 233
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSL+N ERAIVT++AGTTRD +E ++ + G+ + ++DTAGIR+TDDIVEKIGV++
Sbjct: 234 KSSLMNVLVGEERAIVTDVAGTTRDTLEENIRLHGISLNIIDTAGIRDTDDIVEKIGVDK 293
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
+ +A AD+II V D E++ I+ K I+++NK D +
Sbjct: 294 ARQIADDADLIIYVVDGSRPLDENDREIMELIRGRKA--------IVLLNKTDLEMLVTE 345
Query: 451 E--WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ + G + + A +GI LE I ++ +I N R L
Sbjct: 346 KELEERTGQTV---IPVSAKEQKGIDVLEERIRELFFSGKIDFNDEVMITNVRHKTALRE 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++L+ ++ SIE+++P DF++IDL +A LG I GE + +++++ IF KFC+GK
Sbjct: 403 AYDSLLLVEKSIEDQMPEDFFSIDLMNAYEELGTIVGEALEDDLVNEIFSKFCMGK 458
>gi|417921660|ref|ZP_12565150.1| tRNA modification GTPase TrmE [Streptococcus cristatus ATCC 51100]
gi|342833545|gb|EGU67825.1| tRNA modification GTPase TrmE [Streptococcus cristatus ATCC 51100]
Length = 457
Score = 287 bits (735), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 171/481 (35%), Positives = 277/481 (57%), Gaps = 37/481 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++F+ G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFR----------GKDLSKVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++ ++DEV+ M +P+++TRED++E+ HG +L+ + GA LA+
Sbjct: 54 YGHIVDPQNQEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ S R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSDLINSTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ ++ +K Q + + L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTEIIREKTLEFEQLLTHLLKTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNINGVPLKLIDTAGIRETDDLVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q + + I+++NK D
Sbjct: 294 ERSKKALQEADLVLLVLNASEPLTDQDKQLLEISQDSNR--------IVLLNKTDLEEKI 345
Query: 449 SNEWNKV-GNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQC 503
E +++ N+ + + Q I +E I ++ G+ + A + N R
Sbjct: 346 --ELDQLPANA----IKISVLHNQNIDKIEDRINQLFFENAGILEQDA---TYLSNARHI 396
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
+ + E+L + +E +P+D +DL LG+I+G+ +E+++ +F +FC+G
Sbjct: 397 SLIKKAVESLQAVNQGLELGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLG 456
Query: 564 K 564
K
Sbjct: 457 K 457
>gi|420157442|ref|ZP_14664276.1| tRNA modification GTPase TrmE [Clostridium sp. MSTE9]
gi|394756148|gb|EJF39273.1| tRNA modification GTPase TrmE [Clostridium sp. MSTE9]
Length = 461
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 171/465 (36%), Positives = 265/465 (56%), Gaps = 26/465 (5%)
Query: 106 PGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNV--- 162
PG +G++R+SGP A I GRVF + +K + + YG V R G+
Sbjct: 17 PGGIGVIRISGPGARQIAGRVFVSARGQKIEE-------IPGYTALYGWVC-RFGSQSKE 68
Query: 163 -VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLN 221
+DE +A +AP SYT EDVVEL CHG LRRVL + L AGA+ A PGEFT RAFLN
Sbjct: 69 RIDEAVATVFVAPHSYTGEDVVELSCHGGLYLLRRVLDSVLAAGASPAGPGEFTRRAFLN 128
Query: 222 GRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDF-D 280
G++DL+QAE+V +LI A+ A A AG +G + R + + + + A D+ +
Sbjct: 129 GKMDLTQAESVMQLIGAQGSQALRTARAGREGALYRRIQGSREQLLTVAAHLSAWADYPE 188
Query: 281 DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSK 340
+++P L+ + + + ++ D+ L + ++L+ G+ IVGRPNVGKS+L+N +
Sbjct: 189 EDIPQLDESSLKASLQSVQDDLTRLLNQFDAGRVLREGVDTVIVGRPNVGKSTLMNLLAG 248
Query: 341 SERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADV 400
ER+IVTE AGTTRD++E +V + GVP+ L DTAG+RETDD VE IGV+R++ A +
Sbjct: 249 CERSIVTEYAGTTRDIVEETVLLGGVPLRLADTAGLRETDDPVESIGVDRAKDRLSTAQL 308
Query: 401 IIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFN 460
++ + T ED EL++R+ S TP + VINK D E+ + N F
Sbjct: 309 VLAVFDSSSPLTEEDQELISRL--------SGTPAVAVINKSDLEQKIDTEY--IQNKFQ 358
Query: 461 DHVFTCAVTGQGIQDLETAIMKIVGLHQI-PAGGRRWAVNQRQCEQLMRTKEALVRLKSS 519
+V+ A +G G+ +L+ A+ +++ + P+ G + +RQ + R KE L +
Sbjct: 359 QYVYISARSGDGLAELQRAVEQLLHTADLNPSEGILF--TERQRDTARRAKERLEEAMDA 416
Query: 520 IEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + LD T+ + A AL +++GE + E++ +F FC+GK
Sbjct: 417 LTGGMTLDAVTVSVESAVSALLELTGERATNEIVDTVFAHFCVGK 461
>gi|253753982|ref|YP_003027123.1| tRNA modification GTPase TrmE [Streptococcus suis P1/7]
gi|386578281|ref|YP_006074687.1| tRNA modification GTPase TrmE [Streptococcus suis GZ1]
gi|386580351|ref|YP_006076756.1| tRNA modification GTPase TrmE [Streptococcus suis JS14]
gi|386582365|ref|YP_006078769.1| tRNA modification GTPase TrmE [Streptococcus suis SS12]
gi|386588551|ref|YP_006084952.1| tRNA modification GTPase TrmE [Streptococcus suis A7]
gi|251820228|emb|CAR46651.1| tRNA modification GTPase TrmE [Streptococcus suis P1/7]
gi|292558744|gb|ADE31745.1| tRNA modification GTPase TrmE [Streptococcus suis GZ1]
gi|319758543|gb|ADV70485.1| tRNA modification GTPase TrmE [Streptococcus suis JS14]
gi|353734511|gb|AER15521.1| tRNA modification GTPase TrmE [Streptococcus suis SS12]
gi|354985712|gb|AER44610.1| tRNA modification GTPase TrmE [Streptococcus suis A7]
Length = 457
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 181/480 (37%), Positives = 265/480 (55%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG A I VFK G SH +
Sbjct: 6 FDTITAISTPLG--EGAIGIVRLSGTDAFAIASTVFK----------GKDLATVPSHSLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG +D G V+DEV+ M +P+++TREDV+E+ HG +L+ + GA +A+
Sbjct: 54 YGHAIDPATGQVLDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEILQLLIRQGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A A+ + G S L+ R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDVIRAKTDKAMHNAVRQLDGSLSQLINDTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ LV +K +EN L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEATTELVREKTLQFQALLENLLRTARRGKILREGIATAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + E+AIVT+IAGTTRDVIE V + GVP+ L+DTAGIRETDDIVEKIGV
Sbjct: 234 VGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDIVEKIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD+I++ ++A + T +D LL + I+++NK D
Sbjct: 294 ERSKKALEEADLILLVLNASEPLTEQDRNLL--------AISDMANRIVLLNKTDL---- 341
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +V D + + Q I +E I ++ GL + A + N R
Sbjct: 342 -EEQIEVDQLPEDVIRISVLQNQNIDQIEEKINQLFFENAGLVEQDA---TYLSNSRHIS 397
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++L + ++ +P+D +DL LG+I+G+ +E+++ +F +FC+GK
Sbjct: 398 LIEQAVQSLHAVNDGLKVGMPVDLLQVDLTRCWQILGEITGDAAPDELITQLFSQFCLGK 457
>gi|429761605|ref|ZP_19294028.1| tRNA modification GTPase TrmE [Anaerostipes hadrus DSM 3319]
gi|429183512|gb|EKY24560.1| tRNA modification GTPase TrmE [Anaerostipes hadrus DSM 3319]
Length = 458
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 174/485 (35%), Positives = 270/485 (55%), Gaps = 43/485 (8%)
Query: 93 STIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEY 152
+TIAAI T + +GI+R+SG A+DI+ + K K ++ Y
Sbjct: 4 NTIAAIATPM--TNSGIGIIRISGDEALDIIEK------VFKPKKKDKKIKDVKTYTAHY 55
Query: 153 GVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
G V D ++DE + + M P SYT EDVVE+ CHG V +++VL A +AGAT A+PG
Sbjct: 56 GHVYDE-STLLDECIVLVMKGPHSYTAEDVVEINCHGGVVVMKKVLEAVFKAGATPAEPG 114
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLS+AE V LI +K+ A +L ++G +T +R + I +
Sbjct: 115 EFTKRAFLNGRIDLSEAEAVMDLIQSKNEFAMSTSLKQLEGALGKKITEIRKQIIHSVAF 174
Query: 273 IEARLD---------FDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
IE+ LD F DE+ D++ + + LE A+ ++L+ G+Q I
Sbjct: 175 IESALDDPEHYSVDGFSDELK--------DQVEVIINQLNAFLENADNGRILKEGIQTVI 226
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383
VG+PN GKSS+LN ERAIVT+IAGTTRD +E S+ + G+P+ ++DTAGIR+T+D++
Sbjct: 227 VGKPNAGKSSVLNVLLGEERAIVTDIAGTTRDTLEESIQIKGIPLNIIDTAGIRDTNDLI 286
Query: 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443
EKIGV++++ + AD+++ V D T +D E++ I+ + I+++NK D
Sbjct: 287 EKIGVDKAKDLLTKADLVLYVVDTSDPLTKDDEEIMELIEDKQT--------IVLLNKAD 338
Query: 444 CAPSASNEWNKVGN----SFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVN 499
++ KV + F V A GI++L I I + + N
Sbjct: 339 L-----DQVVKVSDLKEKGFEQIVQISAKEQTGIEELYQLIQDIFFEGHVSFNDEIYLTN 393
Query: 500 QRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGK 559
R ++ ++L + SIE+ +P DF++IDL DA LG I+GE + E++++ IF +
Sbjct: 394 MRHKTEVSEALKSLAMVLQSIEDGMPEDFFSIDLLDAYEHLGFITGESVGEDLVNEIFAE 453
Query: 560 FCIGK 564
FC+GK
Sbjct: 454 FCMGK 458
>gi|304405894|ref|ZP_07387552.1| tRNA modification GTPase TrmE [Paenibacillus curdlanolyticus YK9]
gi|304345137|gb|EFM10973.1| tRNA modification GTPase TrmE [Paenibacillus curdlanolyticus YK9]
Length = 461
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 182/479 (37%), Positives = 277/479 (57%), Gaps = 26/479 (5%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
T TIAAI T++G G++ I+R+SGP A++ VF+ K+ +S+ SH V
Sbjct: 4 THDTIAAIATAVG--EGSIAIIRVSGPDAIERTADVFR--SKEDFRSA-------ESHTV 52
Query: 151 EYGVVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACL-EAGATL 208
YG ++D N V+EVL M PRS+T EDVVE+ HG + + VL+ L + G +
Sbjct: 53 HYGHIVDPLTNQRVEEVLVTVMRGPRSFTGEDVVEIGTHGGVIAAKNVLQLVLKQPGIRV 112
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DL+QAE V LI +KS A A+ +G S + +R IE
Sbjct: 113 AEPGEFTKRAFLNGRIDLTQAEAVMDLIRSKSDRAFQVAMKQSEGSLSKRIADLRQTIIE 172
Query: 269 LLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
++ +E +D+ + ++ L + + + V+ L+TA+ K+L+ G+ AIVGRP
Sbjct: 173 VIAHVEVNIDYPEHDVEELTSAFIREHCGVALEGVKRLLKTASEGKILREGIVTAIVGRP 232
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLNA ++S +AIVT+I GTTRDVIE VTV G+P+ LLDTAGIRET D+VE+IG
Sbjct: 233 NVGKSSLLNALTQSNKAIVTDIPGTTRDVIEEFVTVNGIPLRLLDTAGIRETADVVERIG 292
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
VERS + AD+I+ ++ + +D +L+ ++ + ++++ NK D
Sbjct: 293 VERSNSALEEADLILYVLNRNEKLHDDDRQLMEKLAGRQ--------VVVIFNKTDLPQQ 344
Query: 448 ASNEWNKVGNSF-NDHVFTCAVTG-QGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
E +V F + + +V G +GI LE I ++ +I + + N R
Sbjct: 345 L--ETAEVEQVFPAERIVPMSVLGEEGIDRLEEVISELFFEGRIESNDLTYVTNVRHISL 402
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L R K++L+ + E +P+D ID++ A LG++ G+ E +L IF +FC+GK
Sbjct: 403 LERAKQSLLDAIEATEIGVPIDIVQIDIQQAWELLGEVIGDSAGESLLDQIFSQFCLGK 461
>gi|402574986|ref|YP_006624329.1| tRNA modification GTPase trmE [Desulfosporosinus meridiei DSM
13257]
gi|402256183|gb|AFQ46458.1| tRNA modification GTPase trmE [Desulfosporosinus meridiei DSM
13257]
Length = 454
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 181/473 (38%), Positives = 273/473 (57%), Gaps = 24/473 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWR-PTSHVVEY 152
TI A+ T++G ++ I+RLSG A I+ + F P ++ W+ + +
Sbjct: 4 TIVAMATAMG--EASIHILRLSGSEAGKIIEKCFNPQNSER--------WQLGENFTLNL 53
Query: 153 GVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
G+ D H V+DEVL ML+P SYT EDV E+ CHG +R+L+ C+ GA LA+ G
Sbjct: 54 GLFHDEH-KVLDEVLIGRMLSPFSYTGEDVYEINCHGGPYVAQRILQECIRNGARLAEAG 112
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EF+ RAFLNG+LDL QAE V LIS+++ +A+ ALA + GG S +T +R K +E+L
Sbjct: 113 EFSKRAFLNGKLDLIQAEAVIDLISSRTETSANLALAQLSGGLSHQITDLRDKILEILAY 172
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IEA +DF +D++ L+ N + I +E+ L+ + K+L+ GL IVG+PNVGK
Sbjct: 173 IEAGIDFPEDDVESLDRNNLQSLIGKTLSSIEDLLKGSKTGKILRDGLLTVIVGQPNVGK 232
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLNA K +RAIVT+I GTTRD I SV+V G+ + L+DTAGI E+ D VE++G+ERS
Sbjct: 233 SSLLNALLKEDRAIVTDIPGTTRDEIRESVSVGGILLKLVDTAGICESSDFVERLGIERS 292
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
A++I++ V A T+ ++E+LN + +I+V+NK D SN+
Sbjct: 293 WNALKSAELILLVVQANIPLTNVENEILNTYKD---------KVIVVLNKTDLLK--SNQ 341
Query: 452 WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKE 511
+ N++ + + +G +LE AI K V N RQ L K
Sbjct: 342 EVVITNNYGLCIPLSILEHRGFDELENAIRKRVFQGDTAISSDPLLSNIRQISSLDNCKN 401
Query: 512 ALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+L + S+ + +P D +ID+R A + +I+G ++ E +L +IF +FCIGK
Sbjct: 402 SLNQAFESLLQGMPWDILSIDIRHALQHISEITGHNVQESLLDDIFSRFCIGK 454
>gi|327398259|ref|YP_004339128.1| tRNA modification GTPase mnmE [Hippea maritima DSM 10411]
gi|327180888|gb|AEA33069.1| tRNA modification GTPase mnmE [Hippea maritima DSM 10411]
Length = 453
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 187/480 (38%), Positives = 270/480 (56%), Gaps = 45/480 (9%)
Query: 95 IAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVF--KPVKKKKKKSSGSGSWRPTSHVVEY 152
IAAI T G A+GI+R+SG ++++ ++F KP K + + Y
Sbjct: 9 IAAIAT--GYTEAAIGIIRVSGKGCLELLEKIFTKKPPYKANR--------------LYY 52
Query: 153 GVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
G + D+ G V+DEVL AP SYT ED E+ CHG V L VL +EAGA LAQPG
Sbjct: 53 GHITDKQGKVLDEVLVSIFKAPHSYTGEDSFEINCHGGLVVLNSVLERVMEAGARLAQPG 112
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNG+LDLSQAE V K+ISAKS A D A +QG FSS + +R + + L+ E
Sbjct: 113 EFTKRAFLNGKLDLSQAEAVAKVISAKSKRAVDVAQRQLQGNFSSKLDEIREQILYLMAE 172
Query: 273 IEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALE----TANYDKLLQSGLQIAIVGRPN 328
E R+D +E L+ +KI +S D++N L+ A + L G+ +A+VG+PN
Sbjct: 173 NEVRIDHPEE--DLSDVSTEEKIRTIS-DIQNKLKQILRAAEFGNHLFEGVILALVGKPN 229
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + SERAIVT+I GTTRDV++ + GVP ++LDTAGIR+T+D VEKIGV
Sbjct: 230 VGKSSLLNLITGSERAIVTDIPGTTRDVVKEQFNINGVPFSILDTAGIRKTNDTVEKIGV 289
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
+RS AD+++ + T ED +L+ R++S S+ P+I ++NK D
Sbjct: 290 KRSLKAIDEADIVLAIFDGSNDLTQEDKKLIERLKS------SAKPIIAILNKTDLGI-- 341
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGG----RRWAVNQRQCE 504
+ NK F + +G+G+ LE L I GG + ++N Q +
Sbjct: 342 --KINKDNLPFEHLLELSCKSGKGLDKLEKT------LSNIALGGVDDSQIVSLNASQKQ 393
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + + +LK+ I+ ++ +D L ++ G+ +E++L +F KFCIGK
Sbjct: 394 SLKKAIQMCEQLKNDIDNDIDPALIGVDFMALTDYLDEVIGKITNEDMLDVMFKKFCIGK 453
>gi|422876320|ref|ZP_16922790.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK1056]
gi|332361128|gb|EGJ38932.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK1056]
Length = 479
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 170/480 (35%), Positives = 274/480 (57%), Gaps = 35/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G SH +
Sbjct: 28 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKNLSEVESHTLN 75
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++ ++DEV+ M +P+++TRED++E+ HG +L+ + GA +A+
Sbjct: 76 YGHIVDPQNQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARMAE 135
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S+L+ + R + + L
Sbjct: 136 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTL 195
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + N L TA K+L+ G+ AI+GRPN
Sbjct: 196 AQVEVNIDYPEYDDVEEMTTQLMREKTAEFEALLSNLLNTARRGKILREGISTAIIGRPN 255
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 256 VGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGV 315
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q + + I+++NK D
Sbjct: 316 ERSKKALQEADLVLLVLNASEPLTDQDRQLLEISQDSNR--------IVLLNKTDLEEKI 367
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCE 504
E +++ D + + Q I +E I + G+ + A + N R
Sbjct: 368 --ELDQLP---TDVIKISVLHNQNIDKIEERINQFFFEKAGIIEQDAT---YLSNARHIS 419
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 420 LIEKALESLQAVNQGLEMGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 479
>gi|348025753|ref|YP_004765558.1| tRNA modification GTPase TrmE [Megasphaera elsdenii DSM 20460]
gi|341821807|emb|CCC72731.1| tRNA modification GTPase TrmE [Megasphaera elsdenii DSM 20460]
Length = 458
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 169/480 (35%), Positives = 276/480 (57%), Gaps = 31/480 (6%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVF-----KPVKKKKKKSSGSGSWRP 145
T TIAAI T +G +G++R+SG A + +F KP+ +++ +S
Sbjct: 4 TTDTIAAIATPLG--ESGIGVIRISGSHAYAVGDAIFRSPSGKPLAQRRDRS-------- 53
Query: 146 TSHVVEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAG 205
+++G+V+ G VDEVL + M P SYT EDV+E+QCHG L +L L G
Sbjct: 54 ----IQHGLVVADDGRPVDEVLMLIMKGPHSYTAEDVLEIQCHGGRKALEEILSLVLAHG 109
Query: 206 ATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAK 265
A LA PGEFT RAF+NGR+DL+QAE V +I AKS +A+ ++G S ++ ++R +
Sbjct: 110 ARLANPGEFTQRAFVNGRIDLAQAEAVMDVIQAKSRQGLTSAVNQLEGRLSKVIGAMRHE 169
Query: 266 CIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIV 324
+ +T +E +D+ ++++ + + V I ++ LE ++ ++++ G+ AI
Sbjct: 170 LTDFITRLEVTIDYPEEDLEDITVPDVAGAIRKQLASLDEMLEASHDGRIIRDGVMAAIA 229
Query: 325 GRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVE 384
G PN GKSSLLN + +RAIVT++ GTTRDV+E +++ GVPV L+DTAGIRETDD VE
Sbjct: 230 GTPNAGKSSLLNRLLQEDRAIVTDVPGTTRDVLEEWISLKGVPVCLVDTAGIRETDDTVE 289
Query: 385 KIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDC 444
KIGV +++A AD+I++ + + + ED +L + +++V+NK D
Sbjct: 290 KIGVTKAKAYMDKADIILVVIDSSRPLSEEDRAILENTKERN--------VLIVLNKSDL 341
Query: 445 APSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCE 504
P + + +G + + A TG+G++ L+ ++ + L G N R E
Sbjct: 342 TPVVAEK--DLGQYGHPVLSLSAGTGEGLEALKEQLLSL-ALSHADTAGSALLTNTRHIE 398
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ +++EAL R SIE +P+D +DLR+A LG I+G+ + ++++ IF +FC+GK
Sbjct: 399 LVRQSREALKRALDSIEAGMPVDCAVVDLREAWDLLGSITGDTVHDDMVEEIFSRFCLGK 458
>gi|343086930|ref|YP_004776225.1| tRNA modification GTPase mnmE [Cyclobacterium marinum DSM 745]
gi|342355464|gb|AEL27994.1| tRNA modification GTPase mnmE [Cyclobacterium marinum DSM 745]
Length = 460
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 172/476 (36%), Positives = 273/476 (57%), Gaps = 31/476 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI A+ T G GA+ ++RLSG A+ + +VF G + SH + +G
Sbjct: 11 TIIALATPQG--VGAIAVIRLSGNNAIKLANQVF----------YGKDLEKQESHTIHFG 58
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ D V+DEVL +AP+S+T+E+VVE+ HGS + +V++ + GA A PGE
Sbjct: 59 TIRDEK-RVIDEVLVSLFIAPKSFTKENVVEISTHGSSYIINQVIKLLVSKGARPALPGE 117
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNG+ DL+QAE V LI + S A+ AA+ ++GGFS + S+R + I + I
Sbjct: 118 FTQRAFLNGQFDLAQAEAVADLIHSDSEASHQAAMNQMRGGFSGEIASLRTELIHFASMI 177
Query: 274 EARLDFDDEMPPL----NLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
E LDF +E +L ++++K+ + VE + + + ++++G+ I G+PN
Sbjct: 178 ELELDFTEEDVEFASRDDLRILVEKLLRV---VEQLISSFDLGNVIKNGVPTVIAGKPNA 234
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKS+LLNA K E+AIV++IAGTTRD IE + + GV DTAGIRET D++E +GV
Sbjct: 235 GKSTLLNALLKEEKAIVSDIAGTTRDFIEDEINIGGVIFRFTDTAGIRETTDVLEAMGVS 294
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA-PSA 448
R+ A +I+ D E S+ +N++++ P + V NK+D A P
Sbjct: 295 RTHEKMKAASLILYLFDLGDTDMVEISKDINKLEN------LGIPFLKVANKVDKANPLF 348
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
NE K S+ D +F A + ++ L + I+++V L + G N R + L R
Sbjct: 349 VNELKK---SYPDTIFISAGKKENLETLTSRILELVNLDKFRTGN-TIVTNIRHYDSLTR 404
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
T+++L+ + + ++EE+ DF +D+R + LG+I+GE ++++L+NIF KFCIGK
Sbjct: 405 TRQSLLDVLTGLDEEVTNDFLAMDIRRSLHFLGEITGEITTDDLLANIFSKFCIGK 460
>gi|422858390|ref|ZP_16905040.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK1057]
gi|327460276|gb|EGF06613.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK1057]
Length = 457
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 168/477 (35%), Positives = 270/477 (56%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKNLSKVESHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++ ++DEV+ M +P+++TRED++E+ HG +L+ + GA +A+
Sbjct: 54 YGHIVDPQNQEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSDLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + N L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTQLMREKTVEFEALLSNLLDTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL + I+++NK D
Sbjct: 294 ERSKKALQEADLVLLVLNANEPLTDQDRQLL--------EISKDSNRIILLNKTDL---- 341
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
E ++ D + + Q I +E I + + I + N R +
Sbjct: 342 -EEKIELDQLPTDVIKISVLHNQNIDKIEERINHLFFENAGIVEQDATYLSNARHISLIE 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 401 KALESLQAVNQGLEVGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|319891293|ref|YP_004148168.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus
pseudintermedius HKU10-03]
gi|317160989|gb|ADV04532.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus
pseudintermedius HKU10-03]
Length = 460
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 179/478 (37%), Positives = 270/478 (56%), Gaps = 26/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TI +I T +G GA+GIVRLSG AV+I +++K K PT H +
Sbjct: 4 LDTITSISTPMG--EGAIGIVRLSGHDAVEIADKLYKGKHLLKDV--------PT-HTIN 52
Query: 152 YGVVLDRHGNVVDEVLAVPML-APRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D V E + V +L APR++TRED+VE+ CHG + + RVL + GA +A+
Sbjct: 53 YGHIIDPETEEVVEEVMVSVLRAPRTFTREDIVEINCHGGILTINRVLELTMTYGARMAE 112
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGE+T RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+L
Sbjct: 113 PGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRQSILEIL 172
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ ++++ + Q+++ L+T K+++ GL IVG+PN
Sbjct: 173 AQVEVNIDYPEYDDVEDATTEFLLERSQEIKQEIQKLLDTGVQGKIMREGLSTVIVGKPN 232
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 233 VGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 292
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD+I+ ++ + T +D +L I++ I++INK D
Sbjct: 293 ERSRKALSEADLILFVLNYNEPLTEDDRKLYEVIKNEDA--------IVIINKTDLEQRL 344
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ +V D + T + QGI +LE I + ++ + + N R L
Sbjct: 345 --DLAEVEAMVGDMPIIQTSMLQQQGIDELEIQIRDLFFGGEVQSQDMTYVSNSRHISLL 402
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K A+ + E +P+D IDL LG+I GE SEE++ +F +FC+GK
Sbjct: 403 KQAKNAIQDAIDAAEMGVPMDMVQIDLTRTWEILGEIIGESASEELIDQLFSQFCLGK 460
>gi|409100986|ref|ZP_11221010.1| tRNA modification GTPase TrmE [Pedobacter agri PB92]
Length = 452
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 176/475 (37%), Positives = 273/475 (57%), Gaps = 32/475 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI A+ T G GA+G++RLSGP A+ + VF +G + SH + +G
Sbjct: 6 TIIALSTPSG--SGAIGVIRLSGPDAISLTNAVF----------AGKDLTQQASHTLHFG 53
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
++ D ++VDEV+A +AP+SYT+E+VVE+ CHGS +++++ + GA A+PGE
Sbjct: 54 LIKDG-DHIVDEVVAGLFVAPKSYTKENVVEISCHGSNYIIQQIINLLISKGARAAKPGE 112
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FTLRAFLNG DLSQAE V LI++ S A+ D A+ ++GGF++ + ++R + I + I
Sbjct: 113 FTLRAFLNGAFDLSQAEAVADLIASNSKASHDVAMQQMRGGFANELKTLREQLIHFASMI 172
Query: 274 EARLDFDDEMPPL----NLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
E LDF +E L +++KI+ + + + ++ E N ++++G+ I I G+PNV
Sbjct: 173 ELELDFAEEDVEFANREQLTNLVNKINHVLRRLISSFEMGN---VIKNGVPIVIAGKPNV 229
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKS+LLNA ERAIV++IAGTTRD IE +T+ G+ +DTAGIR+T DI+E +GVE
Sbjct: 230 GKSTLLNALLNEERAIVSDIAGTTRDTIEDELTIGGIVFRFIDTAGIRDTADIIEALGVE 289
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
R+ A +II A + ++ + + P ++++NK D A
Sbjct: 290 RTLEKMKQAKLIIYMADAAQSIAEIEEQV-------RGLAQLEIPYLILVNKADLISVAQ 342
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
E K N VF A QGI L+ +++ V LH I N R E L +T
Sbjct: 343 REAFKDLNV----VFISAKEKQGIDALKDTLLEQVNLHHINT-SETLVTNIRHVEALKQT 397
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ AL R+ +++ + DF +D++ A LG+I+G ++++L NIF KFCIGK
Sbjct: 398 ENALQRVLDNVDNPVTSDFLAMDIKQALHYLGEITGTVTTDDLLENIFTKFCIGK 452
>gi|421858594|ref|ZP_16290859.1| predicted GTPase [Paenibacillus popilliae ATCC 14706]
gi|410831890|dbj|GAC41296.1| predicted GTPase [Paenibacillus popilliae ATCC 14706]
Length = 458
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 177/477 (37%), Positives = 274/477 (57%), Gaps = 25/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
+ TIAA+ T +G G + ++R+SG A+ V ++F P K K ++ +H +
Sbjct: 3 YDTIAAVSTPLG--EGGIAVIRVSGEGALSEVEKLF-PSKMKLTEAD--------THTIH 51
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + G V+EVL M PRS+T+ED+VE+ HG + +R+V+ LE A+
Sbjct: 52 YGHIVDPKTGERVEEVLVNVMRGPRSFTKEDIVEINTHGGMISIRKVMDLLLEQQIRAAE 111
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE V LI +KS A A+ +QG S + +R IE L
Sbjct: 112 PGEFTKRAFLNGRIDLSQAEAVIDLIRSKSDRAFSVAMKQVQGHLSKKINVLRHTLIETL 171
Query: 271 TEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
IE +D+ + ++ L + ++ + +++E L+ A+ K+++ G+ AIVGRPNV
Sbjct: 172 AHIEVNIDYPEHDVEELTSAFIQEQCGQVKKEIELLLKMASEGKIVREGIVTAIVGRPNV 231
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ++ +AIVT+I GTTRDVIE VT+ G+P+ LLDTAGIRET DIVE++GVE
Sbjct: 232 GKSSLLNTLARENKAIVTDIPGTTRDVIEEFVTINGIPLRLLDTAGIRETTDIVERLGVE 291
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS + L AD+I+ V+ + ++ E + + +I+++NK+D
Sbjct: 292 RSRSALLEADLILFVVNHNEPLHEDEREWMKEFVGRQ--------VIVIVNKMDLPQLI- 342
Query: 450 NEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
E +++ N+F V A +G+ LE AI ++ I AG + N R L
Sbjct: 343 -EISELENTFGADAIVRMSAKEQEGVDALEQAISALLFSGGIEAGDPTYVSNVRHIALLK 401
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ +AL + + +P+D ID+R A LG+I G+ + ++ IF +FC+GK
Sbjct: 402 KAFQALDDAIDASRQGIPIDLIQIDVRSAWEQLGEIIGDAAGDSLIDQIFSQFCLGK 458
>gi|238917975|ref|YP_002931492.1| tRNA modification GTPase [Eubacterium eligens ATCC 27750]
gi|238873335|gb|ACR73045.1| tRNA modification GTPase [Eubacterium eligens ATCC 27750]
Length = 459
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 176/476 (36%), Positives = 273/476 (57%), Gaps = 27/476 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI TS G + IVR+SGP A+ I +VFK K K SH V +G
Sbjct: 6 TIAAISTSTV-SSGGISIVRISGPDAIIIGDKVFKSKKNIK-------LANVQSHTVHFG 57
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ D +GN +DE L + M +P +YT+E++VE+ CHG + ++VL A L AGA LA+PGE
Sbjct: 58 NICD-NGNEIDEALVIVMKSPNTYTKENIVEIDCHGGILVTKKVLEAVLNAGARLAEPGE 116
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGR+DLSQAE V +I+AK+ A +++ + G S + ++R + + I
Sbjct: 117 FTKRAFLNGRIDLSQAEAVIDIINAKNDYALKSSVNQLDGKLSEKIKNIREIILNNVAFI 176
Query: 274 EARLD----FDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
EA LD FD N+N + + + +V+N L+T + +++ G++ I+G+ N
Sbjct: 177 EAALDDPEHFD---IDANVNNLKNDVENCLNNVDNLLKTCDNGRIMHDGVRTVILGKTNA 233
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ++ ERAIVT+I GTTRD +E + + GV + L+DTAGIR+TDD+VE IGV
Sbjct: 234 GKSSLLNVLAREERAIVTDIEGTTRDTLEEMINLSGVTLNLIDTAGIRKTDDVVESIGVN 293
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP-SA 448
+++ +A AD++I V + D E++ I+ K +++++NK D A +
Sbjct: 294 KAKKLAEVADLVIYVVDSSRSLDDNDYEIMELIKDKK--------VLVILNKADLAQVTT 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ + K+ N + V A GI++LE + + ++ + + R E L +
Sbjct: 346 AEDIKKIINC--ETVTISAKQETGIEELEETVKNMFFNGEVKFNEDVYITSTRHKELLKK 403
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ +L + I+ + DF TIDL A LG I GE+I +++ + IF KFC+GK
Sbjct: 404 AENSLKLVLDGIDNMVSEDFLTIDLMAAYENLGLIIGEEIEDDLANRIFSKFCMGK 459
>gi|332664864|ref|YP_004447652.1| tRNA modification GTPase mnmE [Haliscomenobacter hydrossis DSM
1100]
gi|332333678|gb|AEE50779.1| tRNA modification GTPase mnmE [Haliscomenobacter hydrossis DSM
1100]
Length = 458
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 168/473 (35%), Positives = 264/473 (55%), Gaps = 27/473 (5%)
Query: 99 VTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVL 156
+ ++ PPG A+G++RLSGP A+ IV VF K K+ SH + +G +
Sbjct: 6 IVALATPPGIGAIGVIRLSGPQAIQIVDAVFYGKKLDKQ----------ASHTIHFGTIR 55
Query: 157 DRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTL 216
D +++DEVLA + PRSYT E+VVE+ CHGS ++ ++R + GA LAQPGEFTL
Sbjct: 56 DEQDHILDEVLASLFVEPRSYTGENVVEISCHGSNYIIQELIRLFIRKGARLAQPGEFTL 115
Query: 217 RAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEAR 276
RAFLNG++DLSQAE V LI++ S AA A+ ++GG SS + +R + I+ + IE
Sbjct: 116 RAFLNGQMDLSQAEAVADLIASSSEAAQQVAIKQLRGGISSEIKKLRQELIDFASLIELE 175
Query: 277 LDFDDE-MPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLL 335
LDF +E + N + + D + + + + L++ ++ G+ I GRPN GKS+LL
Sbjct: 176 LDFGEEDVEFANRDQLRDLVEKLIRLMHKLLDSFQLGNAIKEGVNTVIAGRPNAGKSTLL 235
Query: 336 NAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395
NA ERAIV+EIAGTTRD IE S+ + G+ ++DTAGIRE D +E IG++++
Sbjct: 236 NALLNEERAIVSEIAGTTRDTIEESLNIQGIQFRIIDTAGIREASDTIEAIGIQKTLEKV 295
Query: 396 LGADVIIMTVSAVDGWTSE-DSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNK 454
+ V++ + ++ +++L + N T +++V NK+D P E+
Sbjct: 296 RQSAVLLYIFDVIKTQPAQLEADLAQLLHPN-------TQLLVVANKMDLNP--YTEYQH 346
Query: 455 VGN---SFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKE 511
N S + A I+ L+ + + V +++ N R E L + KE
Sbjct: 347 YANPHFSAEQWIPISAANEMNIEYLKERLYQTVVSNEVSMDA-AIVSNVRHYEALQKAKE 405
Query: 512 ALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+L + + + DF +D+R + LG+I+GE +E++L NIF +FCIGK
Sbjct: 406 SLEAVIQGLSSAVTTDFIAMDIRHSLAYLGEITGEISTEDLLDNIFSRFCIGK 458
>gi|414160158|ref|ZP_11416429.1| tRNA modification GTPase mnmE [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410878808|gb|EKS26678.1| tRNA modification GTPase mnmE [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 460
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 173/478 (36%), Positives = 269/478 (56%), Gaps = 26/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TI +I T +G GA+GIVRLSG A++I +++K K + S H +
Sbjct: 4 LDTITSISTPMG--EGAIGIVRLSGSRAIEITDKLYKGKKPLAEVDS---------HTIN 52
Query: 152 YGVVLDRHGNVVDEVLAVPML-APRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D N V E + V +L AP+++TRED+VE+ CHG + + RVL + AGA +A+
Sbjct: 53 YGHIVDPDTNEVVEEVMVSVLRAPKTFTREDIVEINCHGGILTINRVLELTMTAGARMAE 112
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGE+T RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S ++ R +E+L
Sbjct: 113 PGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDMIKRQRQSILEIL 172
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ +++K + +++ L T K+++ GL IVG+PN
Sbjct: 173 AQVEVNIDYPEYDDVEDATTEFLLEKSEEIKSEIDRLLATGTQGKIMREGLSTVIVGKPN 232
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIRET+DIVEKIGV
Sbjct: 233 VGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGV 292
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD+I+ ++ + T ED +L I++ I+++NK D
Sbjct: 293 ERSRKALSEADLILFVLNYNEALTEEDVKLYEVIKNEDA--------IVIVNKTDLEQHL 344
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ ++V + D + T + +GI LE I + ++ + N R L
Sbjct: 345 --DLDEVRDMVGDMPVIETSMLKQEGIDQLEEQIRDLFFGGEVQNQDMTYVSNSRHISLL 402
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ + ++ + E +P+D IDL LG+I G S+E++ +F +FC+GK
Sbjct: 403 KQARHSIQDAIDAAEAGIPMDMVQIDLTRTWEILGEIIGASASDELIDQLFSQFCLGK 460
>gi|406981302|gb|EKE02795.1| hypothetical protein ACD_20C00330G0009 [uncultured bacterium]
Length = 467
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 181/486 (37%), Positives = 277/486 (56%), Gaps = 41/486 (8%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKP-VKKKKKKSSGSGSWRPTSHVVEY 152
TIAAI T +G G VG+VR+SG + +I+ ++F + K++ +G + +
Sbjct: 8 TIAAIATPLG--TGGVGVVRISGENSFNIISQIFSSKIDKRELPEFKAGR-------IYH 58
Query: 153 G-VVLDRHGNV--------VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLE 203
G VV + H VDEV+ + P SYT EDV+E+ CHG ++ +L CL+
Sbjct: 59 GWVVANPHSQADDSTTFDPVDEVIVLTFKTPNSYTGEDVIEIHCHGGVNVVKNILNLCLD 118
Query: 204 AGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVR 263
+GA +AQ GEFT RAFLNG++DLS+AE V LI +K+ A + + G S ++++R
Sbjct: 119 SGARIAQAGEFTKRAFLNGKMDLSKAEAVLDLIHSKTDIFASVSAHNLAGKLSLYISNLR 178
Query: 264 AKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
I LL+ I A +DF +E+ + V +KI ++ + ++ AL TA+ L++ GL++AI
Sbjct: 179 EDLITLLSLITAAIDFPEEVDEPGYDYVEEKIVSLIERIDFALNTASTSNLMRYGLKVAI 238
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRE----- 378
VG+PNVGKSSL N+ ER+IVT I GTTRD+I+ + + GVPVTL+DTAGIRE
Sbjct: 239 VGKPNVGKSSLFNSLLNIERSIVTNIPGTTRDIIQEVIDIGGVPVTLIDTAGIRELASSC 298
Query: 379 TDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILV 438
+ + +E IG+ + AD+I+ + G ED+ + IQ P+I +
Sbjct: 299 SSEYIESIGINIARECLKEADLILFLYDSSQGMNEEDNAIYTGIQEK--------PVIKI 350
Query: 439 INKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV 498
K D S KV NS D ++ + T QG+ ++ + KI+ + G ++
Sbjct: 351 GTKADLMIS------KVDNS--DVIYVSSKTYQGMDLVKKELEKILFSKDMTIHG-AFST 401
Query: 499 NQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFG 558
N RQ E L T+ +L+ +S + + DF IDL+ A L LG+I+GE IS+E+++NIF
Sbjct: 402 NIRQQECLRNTRNSLIHALNSSQNKEAQDFIAIDLKAALLFLGEITGEVISDEIINNIFS 461
Query: 559 KFCIGK 564
FCIGK
Sbjct: 462 NFCIGK 467
>gi|83591335|ref|YP_431344.1| tRNA modification GTPase TrmE [Moorella thermoacetica ATCC 39073]
gi|123523726|sp|Q2RFI8.1|MNME_MOOTA RecName: Full=tRNA modification GTPase MnmE
gi|83574249|gb|ABC20801.1| tRNA modification GTPase trmE [Moorella thermoacetica ATCC 39073]
Length = 462
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 192/484 (39%), Positives = 262/484 (54%), Gaps = 39/484 (8%)
Query: 94 TIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAA+ T PPG + I+RLSG A+ IV +VFKPVK ++ SH +
Sbjct: 5 TIAALAT----PPGEGGISIIRLSGSQAIAIVAKVFKPVKGPDLTTT-------RSHTLR 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
G ++D G +DEVL M AP SYT EDVVE+ CHG + RVL+ L GA LA+
Sbjct: 54 LGFIIDPVSGESLDEVLVSVMRAPHSYTAEDVVEINCHGGALATSRVLQLVLRTGARLAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGRLDL+QAE V ++I A+S AAL ++G S + + + +L
Sbjct: 114 PGEFTRRAFLNGRLDLAQAEAVLEIIRARSSRGLTAALDHLRGNLSRKIGELNERLTGIL 173
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+EA +DF +E+ ++ + D + + V+ L T +LL GL++AIVGRPNVG
Sbjct: 174 AALEASMDFPEEVGEVDPENLAD-LRRILAGVDRLLATWEEGRLLTEGLKVAIVGRPNVG 232
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNA ERAIV+ I GTTRD IE ++ + G L+DTAG+RET D +E IGV R
Sbjct: 233 KSSLLNALLNQERAIVSNIPGTTRDTIEETLQLGGFTCRLIDTAGLRETADELESIGVAR 292
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S+ AD++++ V G ED +L ++ +I++ NK+D N
Sbjct: 293 SKKAIAAADLVLVVVDLQTGIQDEDRRVLESVRDK--------VLIIIGNKLDLVAHDIN 344
Query: 451 EWNKVGNSFNDH---VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWA-------VNQ 500
+ SF + V A+ G+G+ +L + +IV GGR A N
Sbjct: 345 KKLADLESFAGNYPRVAVSALKGKGLDELARKVQEIV------LGGRALAGSDEPLITNA 398
Query: 501 RQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKF 560
R L +E L + EE LP D IDL AA LG+I G E++L IF F
Sbjct: 399 RHRAALENCREHLASAIKAWEEGLPEDLIAIDLWSAADYLGEIIGTTAREDLLDRIFSDF 458
Query: 561 CIGK 564
CIGK
Sbjct: 459 CIGK 462
>gi|345859449|ref|ZP_08811799.1| tRNA modification GTPase TrmE [Desulfosporosinus sp. OT]
gi|344327596|gb|EGW39024.1| tRNA modification GTPase TrmE [Desulfosporosinus sp. OT]
Length = 454
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 181/474 (38%), Positives = 268/474 (56%), Gaps = 26/474 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRP-TSHVVEY 152
TI A+ T+ G + I+RLSG A I+ FKP K++ W ++ +
Sbjct: 4 TIVAMATAKG--EAGIHIIRLSGLKAGAIIEDCFKPQNKER--------WLTRENYTLNL 53
Query: 153 GVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
GV D G V+D+VL ML P SYT EDV E+ CHG +R+L+AC+ GA LA+PG
Sbjct: 54 GVFHDE-GKVLDQVLVGRMLTPYSYTGEDVFEINCHGGPFVAQRILQACISHGANLAEPG 112
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EF+ RAFLNG+LDL QAE V LIS+++ +A+ AL + GG S + +R + +E+L
Sbjct: 113 EFSKRAFLNGKLDLVQAEAVIDLISSRTETSANLALTQLSGGLSDTIIKLREEVLEILAF 172
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IEA +DF +D++ L+ + KI D +N L+ + K+L+ GL IVGRPNVGK
Sbjct: 173 IEASIDFPEDDVENLDRETLESKIDKALVDTKNLLDGSKTGKILREGLLTVIVGRPNVGK 232
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
SSLLN+ ERAIVT+I GTTRD+I SV+V G+ + L+DTAGI ET+D VE++G+ER+
Sbjct: 233 SSLLNSLLHEERAIVTDIPGTTRDIIRESVSVGGILLQLMDTAGICETEDFVERLGIERT 292
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451
A++I++ V A T ++ +L + +I+++NKID ++
Sbjct: 293 WNALKTAELILLVVQANIPLTEDEYHILKT---------YAAKVIVIVNKIDL---MDDD 340
Query: 452 WNKVG-NSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
++ V N + + +G Q+LE I V + N RQ L
Sbjct: 341 YHIVKLNQKGSWIPFSVIQHKGFQELEVEIRNRVFQGEAVLESDPLLSNVRQISSLEHCY 400
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL + SI+ LP D +ID+R A + +I+G ++ E +L +IF +FCIGK
Sbjct: 401 TALSQALLSIQNGLPWDILSIDIRQALQYVSEITGHNVQETLLDDIFSRFCIGK 454
>gi|422870848|ref|ZP_16917341.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK1087]
gi|328946229|gb|EGG40373.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK1087]
Length = 479
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 167/477 (35%), Positives = 271/477 (56%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 28 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKNLNKVESHTLN 75
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++ ++DEV+ M +P+++TRED++E+ HG +L+ + GA +A+
Sbjct: 76 YGHIVDPQNQEILDEVMLGAMHSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARMAE 135
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S+L+ + R + + L
Sbjct: 136 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTL 195
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + N L TA K+L+ G+ AI+GRPN
Sbjct: 196 AQVEVNIDYPEYDDVEEMTTQLMREKTAEFEALLSNLLNTARRGKILREGISTAIIGRPN 255
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 256 VGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGV 315
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL Q + + I+++NK D
Sbjct: 316 ERSKKALQEADLVLLVLNASEPLTDQDRQLLEISQDSNR--------IVLLNKTDLEEKI 367
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
+ D + + Q I +E I ++ + I + N R +
Sbjct: 368 ELDLLPT-----DVIKISVLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIE 422
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + ++ +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 423 KALESLQAVNQGLDMGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 479
>gi|422846735|ref|ZP_16893418.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK72]
gi|422862443|ref|ZP_16909075.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK408]
gi|325687543|gb|EGD29564.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK72]
gi|327474426|gb|EGF19832.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK408]
Length = 457
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 166/477 (34%), Positives = 269/477 (56%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKNLNKVESHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++ ++DEV+ M +P+++TRED++E+ HG +L+ + GA +A+
Sbjct: 54 YGHIIDPQNQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQLVIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S+L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTQLMREKTAEFEALLSNLLNTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+I GTTRDVIE V + G+P+ L+DTAGIRETDD+VE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGLPLKLIDTAGIRETDDLVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL + I+++NK D
Sbjct: 294 ERSKKALQEADLVLLVLNASEPLTDQDRQLL--------EISKDSNRIVLLNKTDLEEKI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
+ D + + Q I +E I ++ + I + N R +
Sbjct: 346 ELDLLPT-----DVIKISVLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIE 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 401 KALESLQAVNQGLEMGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|440782445|ref|ZP_20960462.1| tRNA modification GTPase TrmE [Clostridium pasteurianum DSM 525]
gi|440219969|gb|ELP59178.1| tRNA modification GTPase TrmE [Clostridium pasteurianum DSM 525]
Length = 459
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 176/477 (36%), Positives = 274/477 (57%), Gaps = 25/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T++G G + I+R+SG +V+IV ++F+ SG + ++
Sbjct: 4 FDTIVAIATALG--EGGISIIRVSGKDSVNIVNKIFRA-------KSGRTLLNIKPYTMQ 54
Query: 152 YG--VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
YG V L N+ D+V+ M P+S+T ED +E+ CHG RVL L+AGA +A
Sbjct: 55 YGNIVELTTRENI-DDVIVSFMKGPKSFTAEDTIEINCHGGIFSTNRVLEEVLKAGARIA 113
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
+PGEFT RAFLNGR+DLSQAE V +I++K+ + AA+ +G S + +R K +EL
Sbjct: 114 EPGEFTKRAFLNGRIDLSQAEAVMDIITSKTDMSMKAAVKQSEGSLSMCINDLRKKLLEL 173
Query: 270 LTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+ IEA +D+ +D++ L + ++ A+ +E+ + +A+ K+++ GL AIVG+PN
Sbjct: 174 IAHIEATVDYPEDDLEELTSEDTIIQLKAVLYKIESLINSADEGKIIREGLNTAIVGKPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLNA + +RAIVT+I GTTRD+IE + + G+PV ++DTAGIR+T DIVEKIGV
Sbjct: 234 VGKSSLLNALLEEKRAIVTDIEGTTRDLIEEYINISGIPVKIIDTAGIRKTKDIVEKIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
E S AD+II + + ++D +++ I+ K I+++NK D
Sbjct: 294 ENSIKKIDEADLIIFILDSSREIDNKDLDIIRHIKDKK--------YIVILNKTDLPRKI 345
Query: 449 SNEWNKVGNSFNDHVF-TCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
N K+ +S +V A G GI L+ I ++ I A N R L+
Sbjct: 346 QNTDLKILSS--KYVIEMSAKNGFGIDILKDKIKELFFNENIKASN-LIITNIRHKAALI 402
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K + ++++ +D +ID+R+A LGQI+G+ + E+++ IF FC+GK
Sbjct: 403 SAKSNCLEAINALKNTSAIDLASIDIRNAWYNLGQITGDTMEEDLIEKIFKNFCLGK 459
>gi|441500819|ref|ZP_20982968.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Fulvivirga
imtechensis AK7]
gi|441435393|gb|ELR68788.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Fulvivirga
imtechensis AK7]
Length = 460
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 168/476 (35%), Positives = 275/476 (57%), Gaps = 26/476 (5%)
Query: 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVV 150
T TI A+ T+ G GA+ ++R+SG A+ I +VFK G + SH +
Sbjct: 9 TEDTIVALATAPG--VGAIAVIRVSGTDAIKICNKVFK----------GKDLEKQPSHTL 56
Query: 151 EYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG + D + +VDEV+ +AP+S+T+E+VVE+ CHGS ++++++ L GA LA
Sbjct: 57 HYGTIRD-NDKIVDEVVVSLFVAPKSFTKENVVEISCHGSPYIVKQIIKVLLAQGARLAL 115
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAF+NG+ DL+QAE V LI++ S A+ +AAL ++GGFS + +R + I
Sbjct: 116 PGEFTKRAFINGQFDLAQAEAVADLINSDSAASHEAALNQMRGGFSEQIRQLREELIHFA 175
Query: 271 TEIEARLDFDDE-MPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+ IE LDF +E + N + + I+ + + + +++ + ++++G+ I G+PN
Sbjct: 176 SMIELELDFGEEDVEFANRDDLKQLINNLLKVINALIDSFDLGNVIKNGVPTVIAGKPNA 235
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKS+LLNA E+AIV++IAGTTRD IE + + G+ +DTAG+RET D +EKIGVE
Sbjct: 236 GKSTLLNALLNEEKAIVSDIAGTTRDFIEDEINLGGITFRFIDTAGLRETTDTIEKIGVE 295
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA-PSA 448
R++ A +II + + + + +N++++ P I+V NK D A P
Sbjct: 296 RTQQQMKKASLIIYMIDMANDNLVDVNRDINKLEN------LGIPFIVVGNKEDKAQPDL 349
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
K+ S V A T + + L+ I+++V L G N R + L++
Sbjct: 350 KAAIEKIKGS----VLISAATKENLDALKDRILEVVNLDNFKTGD-TIVTNIRHYDNLLK 404
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
T+ AL+ + + ++ + DF +D+R + LG+I+GE ++++L+NIF KFCIGK
Sbjct: 405 TRNALMDVLNGLDNNITGDFLAMDIRQSLHYLGEITGEITTDDLLANIFSKFCIGK 460
>gi|188996901|ref|YP_001931152.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium sp. YO3AOP1]
gi|188931968|gb|ACD66598.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium sp. YO3AOP1]
Length = 447
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 166/460 (36%), Positives = 264/460 (57%), Gaps = 28/460 (6%)
Query: 106 PGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDE 165
P A+ IVR+SG A++I ++F S T V +G + + G ++DE
Sbjct: 15 PSAISIVRISGDKALEIGRKIF------------SLPENITPRKVYFGKIFNNKGEIIDE 62
Query: 166 VLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLD 225
L V P+S+T ED+VE+ HGS ++ +L AC GA LA+PGEFT RAFLNG++D
Sbjct: 63 GLFVYFQKPKSFTGEDLVEIYPHGSVPVVKSILEACFMYGARLARPGEFTERAFLNGKID 122
Query: 226 LSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPP 285
L QAE + LI+AKS AA A++ ++G S + +R K I L++ IEA ++F +++
Sbjct: 123 LLQAEAIADLINAKSERAAKIAVSILEGKLSKQINILREKLINLISLIEAEINFPEDVEE 182
Query: 286 LNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAI 345
++ +L++ ++ + ++ L + L++ G+++AIVGRPNVGKSSL NA ERAI
Sbjct: 183 IDSSLIISQLEEVKSQIDKLLASYKKGNLIKEGIKLAIVGRPNVGKSSLFNALVGYERAI 242
Query: 346 VTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTV 405
V+EI GTTRD IE S+ + +PV LLDTAG+R+T+D +EKIG+E+++ AD+I+ +
Sbjct: 243 VSEIQGTTRDFIEESLKIKDIPVILLDTAGLRDTEDKIEKIGIEKAQEKINEADIILFVI 302
Query: 406 SAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFT 465
A G+T E P I+V+NK D + + K +++ V+T
Sbjct: 303 DASSGFTEE--------DKKIYDKIKDKPHIIVVNKSDLNNKPIDFFEK----YDNIVYT 350
Query: 466 CAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEEL- 524
+ QGI++LE I+ +G+ + +N RQ L + KE + +++ I +
Sbjct: 351 SIINNQGIKELEEKIITSLGIIE---KEDDLFINLRQSTLLKQAKEKIEEIENHINYLIN 407
Query: 525 PLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ I +++A L ++ G +E+VL NIF KFCIGK
Sbjct: 408 NKEILMIYIQEALNYLDEVVGAISTEDVLDNIFSKFCIGK 447
>gi|343519931|ref|ZP_08756903.1| tRNA modification GTPase TrmE [Parvimonas sp. oral taxon 393 str.
F0440]
gi|343398834|gb|EGV11361.1| tRNA modification GTPase TrmE [Parvimonas sp. oral taxon 393 str.
F0440]
Length = 407
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 163/417 (39%), Positives = 249/417 (59%), Gaps = 11/417 (2%)
Query: 149 VVEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+++YG + D+ ++DEV+ M AP +YTRE VVE+ HG VCL+RVL CLE GA L
Sbjct: 1 MMKYGHIYDK-DELIDEVMVCFMFAPHTYTREHVVEIFTHGGIVCLKRVLNLCLENGADL 59
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+ GEFT RAFLNGRLDLSQAE V LI AK+ + +A+ ++G S + R + ++
Sbjct: 60 AEKGEFTKRAFLNGRLDLSQAEGVIDLIKAKTEFSHKSAINQLEGHLSKKIKEFREQLLD 119
Query: 269 LLTEIEARLDFDDEM-PPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
+L+ +E ++F ++M L + V+ K + D+E L +N K+L+ G+ ++I+G+P
Sbjct: 120 ILSFVEYSINFTEDMQEELPFDNVILKTEKLMADMEELLGESNKGKILKDGINVSIIGKP 179
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN + ERAIVT+IAGTTRD+I+ + + G+ + + DTAGIRET D+VEKIG
Sbjct: 180 NVGKSSLLNRILRQERAIVTDIAGTTRDLIKEDIELSGIKLNINDTAGIRETADVVEKIG 239
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
V++S + +D+ ++ ED +++N ++T I ++NK+D
Sbjct: 240 VQKSIEASETSDLNLVLFDISRELDEEDEKIIN--------LANTTKSIGILNKVDLDKK 291
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ E K +F + + A+ +GI LE AI+ + +I + N R L
Sbjct: 292 LNEEKLKEKINF-ELIEISALKNEGISKLEQAIIDMFFDGKIEIKDKALITNVRHENSLK 350
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E L + ++ +P+D +DLR A LG+I GE+ISE +L NIF FCIGK
Sbjct: 351 SSLEYLKSFYADLKNMVPIDCCEVDLRRAYEVLGEIIGENISENILDNIFSNFCIGK 407
>gi|342218844|ref|ZP_08711447.1| tRNA modification GTPase TrmE [Megasphaera sp. UPII 135-E]
gi|341588791|gb|EGS32166.1| tRNA modification GTPase TrmE [Megasphaera sp. UPII 135-E]
Length = 459
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 175/481 (36%), Positives = 278/481 (57%), Gaps = 38/481 (7%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFK-----PVKKKKKKSSGSGSWRPTSH 148
TIAAIVT +G VG++R+SGP A + +F+ P+K ++ +S
Sbjct: 7 TIAAIVTPLG--ESGVGVIRISGPEAFSVGDAIFQSNVATPLKMRQDRS----------- 53
Query: 149 VVEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
++YG ++ G ++DEVL + M P SYT EDVVE+QCHG+ L+ +L L GA L
Sbjct: 54 -IQYGHIVHTDGTIIDEVLLLLMQGPHSYTAEDVVEIQCHGNRYVLQHILNLVLANGARL 112
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFL+GR+DL QAE V +I AKS A ++G S + VR +
Sbjct: 113 ARPGEFTQRAFLHGRIDLVQAEAVMDIIQAKSSRGLTCAEEQLEGRLSKTIQEVRVALTD 172
Query: 269 LLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
+T +E +D+ ++++ + + + + + + L+ + K ++ G+ +AI G P
Sbjct: 173 FITRLEVMVDYPEEDLEEIEVKDISAALQNIQVLLAEMLKKSQTGKCIRDGILVAINGVP 232
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLN + ERAIVT++ GTTRDVIE +T+ G+PV L+DTAGIR+T+D VE+IG
Sbjct: 233 NVGKSSLLNCLLEEERAIVTDVPGTTRDVIEEWITIQGIPVCLVDTAGIRQTEDKVEQIG 292
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
V +++A AD+I++ + + + E+ +LL +Q +K P ++++NK D AP
Sbjct: 293 VLKAQAYMDKADIILIVLDSSRSLSHEERDLL--MQQQQK------PCVVILNKTDLAPV 344
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAG--GRRWAV--NQRQC 503
E + + + A G GI +L+ AI+ ++ + AG G R + N R
Sbjct: 345 I--EADDIAVYGLPIISISAGQGTGISELKQAILDMI----MDAGLQGERSVLLANTRHI 398
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
+ + K ++ R ++ LPLD ID+R A ALG I+G+ + E++++ IF +FC+G
Sbjct: 399 DLTRQAKLSIDRALETVHAGLPLDLAIIDIRAAWEALGAITGQTVGEDIITEIFSRFCLG 458
Query: 564 K 564
K
Sbjct: 459 K 459
>gi|383785875|ref|YP_005470444.1| tRNA modification GTPase trmE [Fervidobacterium pennivorans DSM
9078]
gi|383108722|gb|AFG34325.1| tRNA modification GTPase trmE [Fervidobacterium pennivorans DSM
9078]
Length = 508
Score = 285 bits (729), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 181/481 (37%), Positives = 274/481 (56%), Gaps = 34/481 (7%)
Query: 86 EEKAGTFSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSW 143
E T TI AI T PPG A+GIVR SGP + ++ +++ +K G
Sbjct: 60 ENDGNTRDTIVAIAT----PPGVGAIGIVRASGPHS-------WRILEECVRKDIG---- 104
Query: 144 RPTSHVVEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLE 203
T V YG D GN++DEVL V APRSYT ED+VE+ CHG + +++L ++
Sbjct: 105 --TERKVRYGNFYDSDGNIIDEVLFVGFKAPRSYTGEDMVEVYCHGGILVTQKILEEFIK 162
Query: 204 AGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVR 263
GA LA+ GEFT RAFLNG++DL +AE + ++I AKS + A+ ++G S V+++R
Sbjct: 163 KGARLARNGEFTRRAFLNGKIDLIKAEAILQIIEAKSEESLKLAIDNLKGKLSGEVSAIR 222
Query: 264 AKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
I++L++IE +D+ D++ +V D I Q + L A+ + +G+ +AI
Sbjct: 223 KMLIDVLSKIEVTIDYGDDIEIPREEIVRD-IENAVQFLSEKLAHADKGIHITTGVTLAI 281
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383
VG+PNVGKS+LLN +RAIVT+I GTTRDVI+ + + G+ + DTAGIRET+D+V
Sbjct: 282 VGKPNVGKSTLLNRLLVEDRAIVTDIPGTTRDVIKGEIKIRGIHFVISDTAGIRETEDVV 341
Query: 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443
EKIG+ER+ A ADV++ + A G+T ED +LN I+ + I V NK D
Sbjct: 342 EKIGIERAIREASQADVVLFLLDATTGFTKEDEYILNIIK--------DSNFIAVWNKTD 393
Query: 444 CAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQC 503
N+++KV D V+ A TG+G++ LE I++ I G +RQ
Sbjct: 394 IG----NKFSKVSKD-GDDVYISASTGKGLRTLENKIIE-RARPLIEDGQLSHVTTRRQL 447
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
E L + L + S+ P+D +ID+++A L ++ G + ++++L NIF FC+G
Sbjct: 448 EHLKIVYQHLKKALKSLSGGYPVDIVSIDIQNALSELDKLLGTNFTDDLLDNIFANFCVG 507
Query: 564 K 564
K
Sbjct: 508 K 508
>gi|238926048|ref|YP_002939566.1| tRNA modification GTPase TrmE [Eubacterium rectale ATCC 33656]
gi|238877725|gb|ACR77432.1| tRNA modification GTPase TrmE [Eubacterium rectale ATCC 33656]
Length = 458
Score = 285 bits (729), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 173/476 (36%), Positives = 280/476 (58%), Gaps = 27/476 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++ P +GI+R+SG A+ ++ R++K KKK S+ SH + YG
Sbjct: 5 TIAAIATAM--SPSGIGIIRISGDDALSVIDRIYKSKNNKKKISA------CQSHTIHYG 56
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ D + DEV+ + M AP +YTRED VE+ CHG ++RVL A ++ GA A+PGE
Sbjct: 57 FIYDGDEKI-DEVMVLLMKAPNTYTREDTVEIDCHGGVYVMKRVLEAVIKNGARPAEPGE 115
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGR+DLSQAE+V +I++K+ A ++L+ + G + +R + + + I
Sbjct: 116 FTKRAFLNGRIDLSQAESVIDVINSKNDFALKSSLSQLGGAVLGSIRQIREQLLHEIAFI 175
Query: 274 EARLDFDDEMP----PLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
E+ LD + + P L ++D + +++ L+T++ ++L+ G+ I+G+PN
Sbjct: 176 ESALDDPEHISLDGYPQKLRAIVDNEY---MEIDGLLKTSDNGRILKEGINTVIIGKPNA 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN ++RAIVT+IAGTTRDV+E + + G+ + L+DTAGIR T+D+VEKIGV+
Sbjct: 233 GKSSLLNVLVGTDRAIVTDIAGTTRDVLEEQINIGGITLNLVDTAGIRSTEDVVEKIGVK 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
++ A GAD+II V + D +++N I+ K ++++NK D A S
Sbjct: 293 KAMEHANGADLIIYVVDSSVALDDNDYDIINFIKDKKA--------VILLNKSDLASKVS 344
Query: 450 NEWNKVGNSFNDHVFTC-AVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ + + V + A GI +L I ++ ++ + N R + L
Sbjct: 345 --ADDIKKLVDKTVISVSAKESSGIDELSDTIKEMFFDGEVSFNDEIYITNIRHKKLLSD 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
KE+L + +SI++++P DF++IDL A +LG I GE + ++++ IF KFC+GK
Sbjct: 403 AKESLKLVMNSIDDDMPEDFYSIDLMSAYESLGLIIGESVEDDLMDEIFSKFCMGK 458
>gi|331089219|ref|ZP_08338121.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 3_1_46FAA]
gi|330405771|gb|EGG85300.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 3_1_46FAA]
Length = 465
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 176/485 (36%), Positives = 282/485 (58%), Gaps = 38/485 (7%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T G +GIVR+SG AV + R+++ KK SH + YG
Sbjct: 5 TIAAIST--GMTNSGIGIVRISGEEAVLVADRIYRGKKK---------LCEVKSHTINYG 53
Query: 154 VVLDRH--------GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAG 205
++DR V+DEVL M AP ++T ED VE+ CHG +++VL L+ G
Sbjct: 54 YIVDREISSAEKKSEEVIDEVLVTVMKAPGTFTGEDTVEINCHGGTFVVKKVLELVLKNG 113
Query: 206 ATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAK 265
A+ A+PGEFT RAFLNG++DLSQAE V +I++++ A ++++ ++G + +R K
Sbjct: 114 ASPAEPGEFTKRAFLNGKMDLSQAEAVIDVINSENEYALQSSVSQLKGSVKKKINDIREK 173
Query: 266 CIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMS----QDVENALETANYDKLLQSGLQI 321
I IE LD + ++++ D + + + Q++E + +A+ ++++ G++
Sbjct: 174 IIYHTAFIETALD---DPEHISVDGYSDTLRSSAEEIIQELERLIHSADDGRVIKEGIKT 230
Query: 322 AIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDD 381
IVG+PN GKSSLLN + ERAIVT+I GTTRDV+E ++ + + + ++DTAGIR+T+D
Sbjct: 231 VIVGKPNAGKSSLLNVLAGHERAIVTDIEGTTRDVLEETIKLGVLNLNVVDTAGIRQTED 290
Query: 382 IVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINK 441
++EKIGV+++ A AD+II V A D +++N I S+KKS I+++NK
Sbjct: 291 LIEKIGVDKALEYAETADLIIYVVDASRSLDENDEKIINMI-SDKKS-------IVLLNK 342
Query: 442 --IDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVN 499
ID SA + KV N + A +GI+DLE + ++ I + + N
Sbjct: 343 SDIDTVISAEHIKEKVSNI--PIISISAKEERGIKDLEDKVKEMFLKGDISFNDQVYISN 400
Query: 500 QRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGK 559
RQ L+ E++ ++ SI++ +P DF++IDL DA +LG I+G + E++++ IF K
Sbjct: 401 VRQKNALLEALESMKKVIRSIDDNMPEDFYSIDLMDAYESLGYITGNSVGEDLINEIFSK 460
Query: 560 FCIGK 564
FC+GK
Sbjct: 461 FCMGK 465
>gi|225570320|ref|ZP_03779345.1| hypothetical protein CLOHYLEM_06417 [Clostridium hylemonae DSM
15053]
gi|225160852|gb|EEG73471.1| hypothetical protein CLOHYLEM_06417 [Clostridium hylemonae DSM
15053]
Length = 478
Score = 285 bits (728), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 176/482 (36%), Positives = 266/482 (55%), Gaps = 26/482 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++ +GIVR+SG A I R+++ KK + SH + YG
Sbjct: 12 TIAAISTAM--SDSGIGIVRMSGGKAFMIADRIYEGKNGKKLAAQ-------KSHTIHYG 62
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ D +DEVL + M P SYT ED VE+ CHG +RRVL ++ GA A+PGE
Sbjct: 63 YIKDGE-ETIDEVLVMLMRGPHSYTGEDTVEVNCHGGVYLVRRVLELMIKNGARPAEPGE 121
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGRLDLSQAE V LI++++ A ++++ ++G S + +R K I I
Sbjct: 122 FTKRAFLNGRLDLSQAEAVGDLIASQNEYALKSSVSQLKGNVKSKINDIRNKIIYHTAFI 181
Query: 274 EARLDFDDEMPPLNLNL------VMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
E LD P ++++ + ++ + ++ L T + ++++ G++ IVGRP
Sbjct: 182 ETALD-----DPEHISVDGYGEELRSAVNELLLEINKLLSTCDNGRIIKEGIKTVIVGRP 236
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
N GKSSLLN ERAIVTE+AGTTRD++E + + G+ + ++DTAGIRETDDIVEKIG
Sbjct: 237 NAGKSSLLNVLVGEERAIVTEVAGTTRDILEEHINLQGISLNIIDTAGIRETDDIVEKIG 296
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKS---TESSTPMILVINKIDC 444
V++++ A AD+I+ + A D ++L I ++ MI+ KI
Sbjct: 297 VDKAKMYADEADLILYVIDASAPLDENDRQILKMIYGKPAIILLNKTDLDMIITKEKIKD 356
Query: 445 APSASN-EWNKVGNSFNDHVFTCAVTGQ-GIQDLETAIMKIVGLHQIPAGGRRWAVNQRQ 502
+ASN N + S V + Q GI D E A+ + + + N R
Sbjct: 357 VYNASNPANNNISKSKEIQVIEVSAKNQNGIADFEEAVKNMFFEGNLSFNDEIYITNVRH 416
Query: 503 CEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCI 562
L +L ++ SI+ +P DF++IDL DA +LG I+G+ + E++++ IF KFC+
Sbjct: 417 KAALQDAGGSLQKVIDSIDMGMPEDFYSIDLLDAYKSLGDITGDTMGEDLINEIFSKFCM 476
Query: 563 GK 564
GK
Sbjct: 477 GK 478
>gi|310779689|ref|YP_003968022.1| tRNA modification GTPase trmE [Ilyobacter polytropus DSM 2926]
gi|309749012|gb|ADO83674.1| tRNA modification GTPase trmE [Ilyobacter polytropus DSM 2926]
Length = 455
Score = 285 bits (728), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 172/478 (35%), Positives = 277/478 (57%), Gaps = 29/478 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T G G +GIVR+SG ++ I+ +VF+ +KK + SH +
Sbjct: 2 FDTIAAISTPRG--EGGIGIVRMSGDDSIKILSKVFRAKSEKKVED-------LKSHTIN 52
Query: 152 YGVVLDRHGNVV-DEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG + D G V+ DEV+ + P++YTRED+VE+ CHG + ++L L+ GA +A+
Sbjct: 53 YGHIYD--GEVLLDEVMVSFLKGPKTYTREDIVEINCHGGYLITEKILELLLKKGARIAE 110
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
GEFT RAFLNGRLDL+QAE V +I K+ + +L ++G + + ++ +++
Sbjct: 111 QGEFTRRAFLNGRLDLTQAEAVMDIIHGKTDKSISLSLNQLRGDLKNQIGILKKMILDVA 170
Query: 271 TEIEARLDFDDEM--PPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+ LD+ +E PL NL MD + + + + + + + K+++ G++ AIVG+PN
Sbjct: 171 AHVNVVLDYPEEGIDDPLPDNL-MDNLLEVLKSSDVLIASYDKGKMIKEGVKTAIVGKPN 229
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN K ERAIVT IAGTTRD+IE + + G+P+ L+DTAGIR TDD++E IGV
Sbjct: 230 VGKSSLLNTILKEERAIVTHIAGTTRDIIEEVINLKGIPLILVDTAGIRTTDDVIENIGV 289
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
++SE + AD+++ V ED ++ +++ ++K +I ++NKID
Sbjct: 290 KKSEDLIDKADLVLFVVDGSRELEEEDIKVHDQLNADK--------VIGILNKIDMERKL 341
Query: 449 S-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCEQL 506
NKVG + A GI ++E I K + Q+ ++ + N R L
Sbjct: 342 DLTPLNKVGK----WIEISATENLGISNMEDEIYKYIISGQVEDSSQKLIITNVRHKSAL 397
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+TK+A+ + +I LP+D +DL++A +L +++GE +E++L ++F FC+GK
Sbjct: 398 EKTKQAVENILETINMGLPMDLMAVDLKEALDSLSEVTGEISTEDLLDHVFSNFCVGK 455
>gi|291529193|emb|CBK94779.1| tRNA modification GTPase trmE [Eubacterium rectale M104/1]
Length = 458
Score = 285 bits (728), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 174/476 (36%), Positives = 281/476 (59%), Gaps = 27/476 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++ P +GI+R+SG A+ ++ R++K KKK S+ SH + YG
Sbjct: 5 TIAAIATAM--SPSGIGIIRISGDDALSVIDRIYKSKNNKKKISA------CQSHTIHYG 56
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ D + DEV+ + M AP +YTRED VE+ CHG ++RVL A ++ GA A+PGE
Sbjct: 57 FIYDGDEKI-DEVMVLLMKAPNTYTREDTVEIDCHGGVYVMKRVLEAVIKNGARPAEPGE 115
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGR+DLSQAE+V +I++K+ A ++L+ + G + +R + + + I
Sbjct: 116 FTKRAFLNGRIDLSQAESVIDVINSKNDFALKSSLSQLGGAVLGSIRQIREQLLHEIAFI 175
Query: 274 EARLDFDDEMP----PLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
E+ LD + + P L ++D + ++++ L+T++ ++L+ G+ I+G+PN
Sbjct: 176 ESALDDPEHISLDGYPQKLRAIVDNEYV---EIDSLLKTSDNGRILKEGINTVIIGKPNA 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN S+RAIVT+IAGTTRDV+E + + G+ + L+DTAGIR T+D+VEKIGV+
Sbjct: 233 GKSSLLNVLVGSDRAIVTDIAGTTRDVLEEQINIGGITLNLVDTAGIRSTEDVVEKIGVK 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
++ A AD+II V + + D +++N I+ K ++++NK D A S
Sbjct: 293 KAMEHANEADLIIYVVDSSVVFDDNDYDIINFIKDKKA--------VILLNKSDLASKVS 344
Query: 450 NEWNKVGNSFNDHVFTC-AVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ + + V + A GI +L I ++ Q+ + N R + L
Sbjct: 345 --ADDIKKLVDKTVISVSAKESSGIDELSDTIKEMFFDGQVSFNDEIYITNIRHKKLLSD 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
KE+L + +SI++++P DF++IDL A +LG I GE + ++++ IF KFC+GK
Sbjct: 403 AKESLKLVMNSIDDDMPEDFYSIDLMSAYESLGLIIGESVEDDLMDEIFSKFCMGK 458
>gi|417886092|ref|ZP_12530240.1| tRNA modification GTPase TrmE [Lactobacillus oris F0423]
gi|341593959|gb|EGS36770.1| tRNA modification GTPase TrmE [Lactobacillus oris F0423]
Length = 463
Score = 285 bits (728), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 180/475 (37%), Positives = 268/475 (56%), Gaps = 23/475 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T +G G + I+R+SG AV + R+++ K + +S H + YG
Sbjct: 8 TIAAISTPVG--EGGISIIRISGEDAVAVAKRLYRGSKDLAQVAS---------HTINYG 56
Query: 154 VVLDRHGNV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D + VDEV+ M AP +YT EDVVE+ CHG + R+L+ L GA +A+PG
Sbjct: 57 HIIDPDTDAEVDEVMVSIMRAPHTYTCEDVVEINCHGGLLATNRILQLVLSYGARMAEPG 116
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQ+E V LI AK+ + AL + G S L+ +R +++L +
Sbjct: 117 EFTKRAFLNGRIDLSQSEAVMDLIRAKTDKSMKVALNQLDGDLSRLIRHLRQDILDVLAQ 176
Query: 273 IEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+E +D+ D + + ++ +K + Q ++ L+TA K+L+ GL AI+GRPNVG
Sbjct: 177 VEVNIDYPEYDAVEEMTTKMLKEKALDIQQRIQALLKTAKQGKVLREGLATAIIGRPNVG 236
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLN ++AIVT++AGTTRDVIE V V GVP+ L+DTAGIR+TDD VEKIGVER
Sbjct: 237 KSSLLNTLLHEDKAIVTDVAGTTRDVIEEYVNVDGVPLKLIDTAGIRDTDDTVEKIGVER 296
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S+ AD+I++ + + T+ED ELL Q ++ I+++NK D
Sbjct: 297 SKKALDAADLILLLIDSSAPLTAEDRELLTATQGKQR--------IVILNKTDLPRQVDL 348
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCEQLMRT 509
+ K + + + T V +G+ L I K+ I + V N R L +
Sbjct: 349 DELKKLTAGDALIETSIVKHEGMDQLGQQISKMFFNEGIESSQNNVMVTNARHIGLLHQA 408
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL + I +P+D ID+ LG+I+G+ +E+L +F +FC+GK
Sbjct: 409 NAALSDVLKGINAGMPVDLVQIDMTRCWDLLGEITGDSYQDELLDQLFSQFCLGK 463
>gi|293400090|ref|ZP_06644236.1| tRNA modification GTPase TrmE [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291306490|gb|EFE47733.1| tRNA modification GTPase TrmE [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 443
Score = 285 bits (728), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 175/476 (36%), Positives = 269/476 (56%), Gaps = 42/476 (8%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+ GA+ I+R+SG A+ IV + KK SH + YG
Sbjct: 5 TIAAISTA--AVDGAISIIRMSGDAAIQIVDSLCSIDLTSKK-----------SHTISYG 51
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+LD +DEVL AP+++TRED+VE+ CHG +++L+ CL GA LA+PG
Sbjct: 52 FILDPITKEEIDEVLVSVFRAPKTFTREDIVEINCHGGRYVTKKILQLCLMQGARLAEPG 111
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DL+QAE + +I A S + A+ GI+G L+ ++++
Sbjct: 112 EFTRRAFLNGRIDLTQAEAINDMILADSNESRKLAMHGIRGSVKKLLEPFIKNILDIIAN 171
Query: 273 IEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
IE +D+ D++ L+ +++ KI ++ LE A ++++ G++ AI+G+PNVG
Sbjct: 172 IEVNIDYPEYDDVEMLSNEVILPKIQKWLSQIDQLLERAESGQMMKEGIKTAIIGKPNVG 231
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNA + ++AIVTEIAGTTRD++E + + G+ + L+DTAGIRET+D+VEKIG+ER
Sbjct: 232 KSSLLNALLEEDKAIVTEIAGTTRDIVEGHIHLGGLTLNLIDTAGIRETEDVVEKIGIER 291
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S A +II+ + A ED +L+ + TE+ T I+V NK D
Sbjct: 292 SMKAIEDAQLIILVLDASRPLDEEDQQLM-------QMTENKTR-IIVYNKKD------- 336
Query: 451 EWNKVGNSFNDHVFTCAVTGQG--IQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
N H+ ++ Q I+ L + ++ H+I A N+RQ Q+M+
Sbjct: 337 --------LNQHIKGICISAQHHEIEPLIHEVHRLFDSHKIVIEEPVLA-NERQISQMMK 387
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K++++ +I L LD ID+++A AL +I GE E++L +F FC+GK
Sbjct: 388 AKKSMLSAVDAIAMGLELDVVEIDIQEAYTALKEILGEVHREDLLDTLFANFCLGK 443
>gi|373453250|ref|ZP_09545146.1| tRNA modification GTPase TrmE [Eubacterium sp. 3_1_31]
gi|371964089|gb|EHO81627.1| tRNA modification GTPase TrmE [Eubacterium sp. 3_1_31]
Length = 443
Score = 284 bits (727), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 175/476 (36%), Positives = 269/476 (56%), Gaps = 42/476 (8%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+ GA+ I+R+SG A+ IV + KK SH + YG
Sbjct: 5 TIAAISTA--AVDGAISIIRMSGDAAIQIVDSLCSIDLTSKK-----------SHTISYG 51
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+LD +DEVL AP+++TRED+VE+ CHG +++L+ CL GA LA+PG
Sbjct: 52 FILDPITKEEIDEVLVSVFRAPKTFTREDIVEINCHGGRYVTKKILQLCLMQGARLAEPG 111
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DL+QAE + +I A S + A+ GI+G L+ ++++
Sbjct: 112 EFTRRAFLNGRIDLTQAEAINDMILADSNESRKLAMHGIRGSVKKLLEPFIKNILDIIAN 171
Query: 273 IEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
IE +D+ D++ L+ +++ KI ++ LE A ++++ G++ AI+G+PNVG
Sbjct: 172 IEVNIDYPEYDDVEMLSNEVILPKIQKWLSQIDQLLERAESGQMMKEGIKTAIIGKPNVG 231
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNA + ++AIVTEIAGTTRD++E + + G+ + L+DTAGIRET+D+VEKIG+ER
Sbjct: 232 KSSLLNALLEEDKAIVTEIAGTTRDIVEGHIHLGGLTLNLIDTAGIRETEDVVEKIGIER 291
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S A +II+ + A ED +L+ + TE+ T I+V NK D
Sbjct: 292 SMKAIEDAQLIILVLDASRPLDEEDQQLM-------QMTENKTR-IIVYNKKD------- 336
Query: 451 EWNKVGNSFNDHVFTCAVTGQG--IQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
N H+ ++ Q I+ L + ++ H+I A N+RQ Q+M+
Sbjct: 337 --------LNQHIEGICISAQHHEIEPLIHEVHRLFDSHKIVIEEPVLA-NERQISQMMK 387
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K++++ +I L LD ID+++A AL +I GE E++L +F FC+GK
Sbjct: 388 AKKSMLSAVDAIAMGLELDVVEIDIQEAYTALKEILGEVHREDLLDTLFANFCLGK 443
>gi|297588067|ref|ZP_06946711.1| tRNA modification GTPase TrmE [Finegoldia magna ATCC 53516]
gi|297574756|gb|EFH93476.1| tRNA modification GTPase TrmE [Finegoldia magna ATCC 53516]
Length = 452
Score = 284 bits (726), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 178/478 (37%), Positives = 276/478 (57%), Gaps = 38/478 (7%)
Query: 95 IAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGV 154
IAAI ++ G +GIVR++G VD++ VFK + + + + YG
Sbjct: 5 IAAISSATG--EAGIGIVRMTGEGCVDVLDSVFK---------RANDNADLINRKMTYGH 53
Query: 155 VLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEF 214
++D + +VDEVL M AP +YTREDVVE+ HG V +R+VL L GA LA+ GEF
Sbjct: 54 IVDDN-EIVDEVLVCYMKAPHTYTREDVVEIYTHGGVVAVRKVLEVLLNNGARLAEAGEF 112
Query: 215 TLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIE 274
T RAFLNGR+DLSQAE + +I AK+ A ++ ++G + + +R + +++L+ +E
Sbjct: 113 TKRAFLNGRIDLSQAEAIIDMIKAKTDKAYSVSMKQLEGSVNRNIKQLRDQLLDMLSHVE 172
Query: 275 ARLDFDDEM-------PPLNLNL-VMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
++F ++M P LN V+DK+ +S E+AN ++++ G+ I+G+
Sbjct: 173 YSINFTEDMQDELDNTPVLNEGKEVLDKLKKLS-------ESANRGRIIRDGINTTIIGK 225
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLNA K RAIVT+I GTTRDVIE + + G+ + + DTAGIR+T+DIVEKI
Sbjct: 226 PNVGKSSLLNALLKENRAIVTDIPGTTRDVIEEYIDLDGISLKINDTAGIRDTEDIVEKI 285
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVE+S + +D+II + + ED ++L+ I+ +KKS I+++NKID
Sbjct: 286 GVEKSVSFISDSDLIIAIFDSSREFDDEDRKILDLIR-DKKS-------IVLLNKIDLDG 337
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ N G + +GI+DLE I+++ I A N R + +
Sbjct: 338 GFDFDENLEGIEV---IRISIKQNEGIEDLENKIIEMFNDGYIEANNDNIITNIRHRDII 394
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ ++L +E +P+D + +DLR+A LG+I+GE + ++VL+ IF FCIGK
Sbjct: 395 NKAIKSLESSLHDMECGVPIDCFEVDLRNAWEILGEITGETVDDDVLNKIFSDFCIGK 452
>gi|312623584|ref|YP_004025197.1| tRNA modification GTPase trme [Caldicellulosiruptor kronotskyensis
2002]
gi|312204051|gb|ADQ47378.1| tRNA modification GTPase TrmE [Caldicellulosiruptor kronotskyensis
2002]
Length = 455
Score = 284 bits (726), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 179/477 (37%), Positives = 272/477 (57%), Gaps = 28/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T IG G +GIVR+SG A DI ++ + K K K P +
Sbjct: 3 FDTIVAISTPIG--TGGIGIVRISGKNAFDIAQKLIRSRKYKTVKDI------P----IR 50
Query: 152 YGVVLDRHG--NVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
Y ++D + VDE + + +P SYT EDVVE+Q HG V L+R+L A ++ GA A
Sbjct: 51 YAALVDVYDGDEFVDEAILIKFKSPHSYTGEDVVEIQSHGGMVVLKRILEAAIKNGARHA 110
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
PGEFT RAFLNGR+DLSQAE V +I++K+ A ++G S + + + +
Sbjct: 111 MPGEFTKRAFLNGRIDLSQAEAVIDIINSKTRLLQQNAAKQLKGMLSRRIEEISQLLLNM 170
Query: 270 LTEIEARLDFDD-EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+ IEA +DF + E+ ++ + ++ I A + +E +++ K+++SG+ IVGRPN
Sbjct: 171 VASIEASIDFSEHEVDEVSKDEILFTIDAALEKIEKLIKSYETGKVIKSGIYTVIVGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN K E+AIVT+I GTTRDVIE + + GVP+ L DTAG+R+T+DIVEKIGV
Sbjct: 231 VGKSSLLNRLLKEEKAIVTDIPGTTRDVIEEVLDIEGVPIILADTAGVRKTEDIVEKIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
+++ AD+++ V + G ED E+ I++ + I+++NKID
Sbjct: 291 KKTLESIERADLVLFMVES-SGILQEDLEIFETIKNKR--------FIVIVNKIDKEVKV 341
Query: 449 SNEWNKVGNSF-NDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
S + + F + +F + ++ +E AI V I N R E L+
Sbjct: 342 SQ--DDIKRIFGKEGIFISVEHDKNLELVEKAIANEVLNQNIETHDSVLITNLRHKELLL 399
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ KE LV K +I +PLD +ID+++A +L QI+G++++E+++ IF FCIGK
Sbjct: 400 KAKEFLVSAKENI-YAVPLDILSIDIKNALDSLYQITGKNVTEDMVDRIFSMFCIGK 455
>gi|312869237|ref|ZP_07729409.1| tRNA modification GTPase TrmE [Lactobacillus oris PB013-T2-3]
gi|311095258|gb|EFQ53530.1| tRNA modification GTPase TrmE [Lactobacillus oris PB013-T2-3]
Length = 463
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 179/475 (37%), Positives = 268/475 (56%), Gaps = 23/475 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T +G G + I+R+SG AV + R+++ K + +S H + YG
Sbjct: 8 TIAAISTPVG--EGGISIIRISGEDAVAVAKRLYRGSKDLDQVAS---------HTINYG 56
Query: 154 VVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
++D G VDEV+ M AP +YT EDV+E+ CHG + R+L+ L GA +A+PG
Sbjct: 57 HIVDPDTGAEVDEVMVSVMRAPHTYTCEDVIEINCHGGLLATNRILQLVLSYGARMAEPG 116
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQ+E V LI AK+ + AL + G S L+ +R +++L +
Sbjct: 117 EFTKRAFLNGRIDLSQSEAVMDLIRAKTDKSMKVALNQLDGDLSRLIRHLRQDILDVLAQ 176
Query: 273 IEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+E +D+ D + + ++ +K + Q ++ L+TA K+L+ GL AI+GRPNVG
Sbjct: 177 VEVNIDYPEYDAVEEMTTKMLKEKALDIQQRIQALLKTAKQGKVLREGLATAIIGRPNVG 236
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLN ++AIVT++AGTTRDVIE V V GVP+ L+DTAGIR+TDD VEKIGVER
Sbjct: 237 KSSLLNTLLHEDKAIVTDVAGTTRDVIEEYVNVDGVPLKLIDTAGIRDTDDTVEKIGVER 296
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S+ AD+I++ + + T+ED ELL Q ++ I+++NK D
Sbjct: 297 SKKALDAADLILLLIDSSAPLTAEDRELLTATQGKQR--------IVILNKTDLPRQVDL 348
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV-NQRQCEQLMRT 509
+ K + + + T V +G+ L I ++ I + V N R L +
Sbjct: 349 DELKKLTAGDALIETSIVKHEGMDQLGQQISRMFFNEGIESSQNNVMVTNARHIGLLHQA 408
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
AL + I +P+D ID+ LG+I+G+ +E+L +F +FC+GK
Sbjct: 409 NAALSDVLKGINAGMPVDLVQIDMTRCWDLLGEITGDSYQDELLDQLFSQFCLGK 463
>gi|386320383|ref|YP_006016546.1| tRNA modification GTPase TrmE [Staphylococcus pseudintermedius
ED99]
gi|323465554|gb|ADX77707.1| tRNA modification GTPase TrmE [Staphylococcus pseudintermedius
ED99]
Length = 460
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 178/478 (37%), Positives = 269/478 (56%), Gaps = 26/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TI +I T +G GA+GIVRLSG AV+I +++K K PT H +
Sbjct: 4 LDTITSISTPMG--EGAIGIVRLSGHDAVEIADKLYKGKHLLKDV--------PT-HTIN 52
Query: 152 YGVVLDRHGNVVDEVLAVPML-APRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D V E + V +L APR++TRED+VE+ CHG + + RVL + GA +A+
Sbjct: 53 YGHIIDPETEEVVEEVMVSVLRAPRTFTREDIVEINCHGGILTINRVLELTMTYGARMAE 112
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGE+T RAFLNGR+DLSQAE V I +K+ A+ A+ I+G S L+ R +E+L
Sbjct: 113 PGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRQSILEIL 172
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ ++++ + +++ L+T K+++ GL IVG+PN
Sbjct: 173 AQVEVNIDYPEYDDVEDATTEFLLERSQEIKLEIQKLLDTGVQGKIMREGLSTVIVGKPN 232
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSS+LN + +AIVTE+AGTTRDV+E V V GVP+ L+DTAGIRET+DIVE+IGV
Sbjct: 233 VGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVERIGV 292
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS AD+I+ ++ + T +D +L I++ I++INK D
Sbjct: 293 ERSRKALSEADLILFVLNYNEPLTEDDRKLYEVIKNEDA--------IVIINKTDLEQRL 344
Query: 449 SNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ +V D + T + QGI +LE I + ++ + + N R L
Sbjct: 345 --DLAEVETMVGDMPIIQTSMLQQQGIDELEIQIRDLFFGGEVQSQDMTYVSNSRHISLL 402
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ K A+ + E +P+D IDL LG+I GE SEE++ +F +FC+GK
Sbjct: 403 KQAKNAIQDAIDAAEMGVPMDMVQIDLTRTWEILGEIIGESASEELIDQLFSQFCLGK 460
>gi|125718082|ref|YP_001035215.1| tRNA modification GTPase TrmE [Streptococcus sanguinis SK36]
gi|166234828|sp|A3CNB0.1|MNME_STRSV RecName: Full=tRNA modification GTPase MnmE
gi|125497999|gb|ABN44665.1| tRNA modification GTPase, possibly iron-binding, putative
[Streptococcus sanguinis SK36]
Length = 457
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 166/477 (34%), Positives = 268/477 (56%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKNLSEVESHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++ ++DEV+ M +P+++TRED++E+ HG +L+ + GA +A+
Sbjct: 54 YGHIVDPQNQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S+L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTQLMREKTAEFEALLSNLLNTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+I GTTRDVIE V + G+P+ L+DTAGIRETDD+VE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGLPLKLIDTAGIRETDDLVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL + I+++NK D
Sbjct: 294 ERSKKALQEADLVLLVLNASEPLTDQDRQLL--------EISKDSNRIVLLNKTDLEEKI 345
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
+ D + + Q I +E I ++ + I + N R +
Sbjct: 346 ELDLLPT-----DVIKISVLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIE 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 401 KALESLQAVNQGLEMGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|297566657|ref|YP_003685629.1| tRNA modification GTPase TrmE [Meiothermus silvanus DSM 9946]
gi|296851106|gb|ADH64121.1| tRNA modification GTPase TrmE [Meiothermus silvanus DSM 9946]
Length = 436
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 184/472 (38%), Positives = 265/472 (56%), Gaps = 47/472 (9%)
Query: 95 IAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGV 154
IAAI T G GAVGIVRLSG A+++ +V++ K +K G + YG
Sbjct: 10 IAAIATPPG--KGAVGIVRLSGVGALEVAAKVWRG-KDPRKLEGGRFT---------YGT 57
Query: 155 VLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEF 214
++D G V+DE L + AP SYT +D VELQ HGS LR+VL+A LEAGA LAQPGEF
Sbjct: 58 IVDARGEVLDEALMLVFRAPHSYTGQDAVELQTHGSPAVLRQVLQALLEAGARLAQPGEF 117
Query: 215 TLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIE 274
TLRA+LNGR+DL+QAE V L+ ++S AA AL G+ S + + + +LL I+
Sbjct: 118 TLRAYLNGRMDLAQAEAVLALVESESDAARRQALRGLARSLSQQIEGMAERLYDLLAHIQ 177
Query: 275 ARLDFDDE-MPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSS 333
A LD+ +E + P + + ++ A +VE L TA ++ G ++A+VG PN GKSS
Sbjct: 178 AWLDYPEEGVEPAEIQTTVSEVLA---EVERLLATAPAGRIAHKGARLALVGAPNAGKSS 234
Query: 334 LLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEA 393
LLNA ERAIVT I GTTRD +EA + + GVP+T +DTAG+R+TDD VE+ GVER+
Sbjct: 235 LLNALLGYERAIVTPIPGTTRDYLEAPLEIAGVPITAVDTAGVRQTDDPVERSGVERALK 294
Query: 394 VALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWN 453
+A AD+++ V A + + R + V K D P+ W
Sbjct: 295 IAQEADLVLYLVDAAEPPPTPPDLPWER-------------ALKVATKADLPPA----WE 337
Query: 454 KVGNSFNDHVFTCAVTGQGIQDLETAIM-KIVGLHQIPAGGRRWAVNQRQCEQLMRTKEA 512
+ + + TG G++ L AI K++G + G W N+R + L ++
Sbjct: 338 DA-----EFIRVSSQTGFGLEALRKAIHDKLIGQ---ASEGEIWISNERHTQALYEARQH 389
Query: 513 LVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L+ ++ P D + ++ A AL QI G+D+SEEV++ +F FC+GK
Sbjct: 390 LLEALTA-----PQDLAGLSVQAALDALNQILGKDVSEEVIARVFRNFCVGK 436
>gi|157412546|ref|YP_001483412.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
9215]
gi|166991113|sp|A8G2J5.1|MNME_PROM2 RecName: Full=tRNA modification GTPase MnmE
gi|157387121|gb|ABV49826.1| putative thiophen / furan oxidation protein [Prochlorococcus
marinus str. MIT 9215]
Length = 460
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 169/462 (36%), Positives = 257/462 (55%), Gaps = 26/462 (5%)
Query: 106 PGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGN-VVD 164
G V I+R+SG D + K V+ K K + W SH V +G + + N +D
Sbjct: 22 KGGVAIIRVSGK---DSINSCKKIVQTKSKYA-----WE--SHRVFHGFIQENKQNKFID 71
Query: 165 EVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT--LAQPGEFTLRAFLNG 222
EVL M +P S+T EDVVEL CHG + + +VL+ L + + LA PGEF+ RAFLNG
Sbjct: 72 EVLISVMKSPNSFTGEDVVELHCHGGIIIVNKVLKILLSSNSRVRLANPGEFSQRAFLNG 131
Query: 223 RLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDE 282
++DL+QAE++ +LI+A + +A+ A +GIQG + ++ I L EIEAR+DF+++
Sbjct: 132 KIDLTQAESINQLINASNTRSAELAFSGIQGEIKKKINDIKNDLINQLCEIEARVDFEED 191
Query: 283 MPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSE 342
+ + I + + +E +E A + + +G+ IA++G+ NVGKSSLLN +K E
Sbjct: 192 FTDFDYTKYLKNIKKVKEKIELLIENAKRNSYIHNGISIALIGKTNVGKSSLLNLLAKKE 251
Query: 343 RAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVII 402
+AIVT I GTTRDVIE ++T+ +P+ ++DTAGIRET + +E+IG+++S +D II
Sbjct: 252 KAIVTNIPGTTRDVIEINLTINDIPMKIIDTAGIRETSEQIERIGIKKSFRKIKESDFII 311
Query: 403 MTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDH 462
S +G+ ED +++ I K T L IDC SNE +
Sbjct: 312 YIYSLEEGFNEEDKKIIQEIPKEKLITILGNKKDL----IDCKNINSNE-------LKNT 360
Query: 463 VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEE 522
+ G + L I+K GL Q+ +N+R L L I+
Sbjct: 361 ILMSIKNNDGERLLIDTIIKKCGLKQVE--NINIFLNERHLANLSACLSNLNDTDEIIKN 418
Query: 523 ELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+LP D +I+LRD L +I+G++++EE+L NIF KFCIGK
Sbjct: 419 KLPFDLLSIELRDGIQNLSKITGQELTEELLDNIFSKFCIGK 460
>gi|312136220|ref|YP_004003558.1| tRNA modification gtpase trme [Caldicellulosiruptor owensensis OL]
gi|311776271|gb|ADQ05758.1| tRNA modification GTPase TrmE [Caldicellulosiruptor owensensis OL]
Length = 455
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 179/477 (37%), Positives = 271/477 (56%), Gaps = 28/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G G +GIVR+SG A D+ G K VK +K KS R
Sbjct: 3 FDTIVAISTPVG--TGGIGIVRISGKDAYDVAG---KLVKSRKYKSIHDIPVR------- 50
Query: 152 YGVVLDRHG--NVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
Y ++D + VDE + + +P SYT ED+VE+Q HG V L+R+L A ++ GA A
Sbjct: 51 YAALVDVYDGDEFVDEAILIKFRSPHSYTGEDIVEIQSHGGIVVLKRILEAAIKNGARHA 110
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
PGEFT RAFLNGR+DLSQAE V +I++K+ A ++G S + + + L
Sbjct: 111 MPGEFTKRAFLNGRIDLSQAEAVIDIINSKTRLLQQNAAKQLKGMLSQRIEEISQLLLNL 170
Query: 270 LTEIEARLDFDD-EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+ IEA +DF + E+ ++ + ++ I +E +++ K ++SG+ IVGRPN
Sbjct: 171 VATIEASIDFSEHEVDEVSHDEILSTIDGALAKIEKLIKSYETGKAIKSGIYTVIVGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN K E+AIVT+I GTTRDVIE + + G+P+ L DTAG+R T+D+VEKIGV
Sbjct: 231 VGKSSLLNRLLKEEKAIVTDIPGTTRDVIEEVLDIEGIPIILADTAGVRRTEDVVEKIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ER+ AD+++ V + G ED E+ I+ + ++++NKID
Sbjct: 291 ERTLKSIERADLVLFMVES-SGILQEDLEIFETIKDKR--------FVVLVNKIDREVKV 341
Query: 449 SNEWNKVGNSF-NDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
S + + F + +F + ++ +E AI + V I A N R E L+
Sbjct: 342 SQ--DDIKRVFGKEGIFISVELDKNLELVEKAIAREVLSQNIEAIDSILITNLRHKELLL 399
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++KE L+ K++I +PLD +ID+++A L QI+G++++E+++ IF FCIGK
Sbjct: 400 KSKEFLLSAKTNI-FSVPLDILSIDIKNALENLYQITGKNVTEDMVDRIFSMFCIGK 455
>gi|78778577|ref|YP_396689.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
9312]
gi|123554736|sp|Q31CZ2.1|MNME_PROM9 RecName: Full=tRNA modification GTPase MnmE
gi|78712076|gb|ABB49253.1| tRNA modification GTPase trmE [Prochlorococcus marinus str. MIT
9312]
Length = 460
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 170/462 (36%), Positives = 259/462 (56%), Gaps = 26/462 (5%)
Query: 106 PGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGN-VVD 164
G V I+R+SG D + K V+ K K + W SH V +G +L+ N +D
Sbjct: 22 KGGVAIIRVSGK---DSINSCKKIVQTKSKYA-----WE--SHRVFHGFILENKQNKFID 71
Query: 165 EVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT--LAQPGEFTLRAFLNG 222
EVL + M +P S+T EDVVEL CHG + + +VL+ L + + LA PGEF+ RAFLNG
Sbjct: 72 EVLILVMKSPNSFTGEDVVELHCHGGIILVNKVLQRLLSSNSRVRLANPGEFSQRAFLNG 131
Query: 223 RLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDE 282
++DL+QAE++ +LI+A + +A+ A +G+QG + ++ I L EIEAR+DF+++
Sbjct: 132 KIDLTQAESINQLINASNTRSAELAFSGVQGKIKKKINDIKNDLINQLCEIEARVDFEED 191
Query: 283 MPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSE 342
+ N + I + + +E +E A + + +G+ IA++G+ NVGKSSLLN +K E
Sbjct: 192 FTDFDYNKYLKNIKKVKEKIELLIENAKRNSYIHNGISIALIGKTNVGKSSLLNLLAKKE 251
Query: 343 RAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVII 402
+AIVT I GTTRDVIE ++T+ +P+ ++DTAGIRET + +E IG+++S +D II
Sbjct: 252 KAIVTNIPGTTRDVIEVNLTINDIPMKIIDTAGIRETHEQIESIGIKKSFRKIKESDFII 311
Query: 403 MTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDH 462
S +G+ ED +++ I K T L IDC SNE +
Sbjct: 312 YIYSLEEGFNKEDKKIIQEIPKEKLITILGNKKDL----IDCKNINSNE-------LKNT 360
Query: 463 VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEE 522
+ G + L I+K GL Q+ +N+R L L I+
Sbjct: 361 ILMSIKNNDGERLLIDTIIKKCGLKQVE--NINIFLNERHLTNLSSCLSNLNDTDVIIKN 418
Query: 523 ELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+LP D +I+LRD L +I+G++++EE+L NIF KFCIGK
Sbjct: 419 KLPFDLLSIELRDGIQNLSKITGQELTEELLDNIFSKFCIGK 460
>gi|257067216|ref|YP_003153472.1| tRNA modification GTPase TrmE [Anaerococcus prevotii DSM 20548]
gi|256799096|gb|ACV29751.1| tRNA modification GTPase TrmE [Anaerococcus prevotii DSM 20548]
Length = 452
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 172/478 (35%), Positives = 271/478 (56%), Gaps = 37/478 (7%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKK-KKSSGSGSWRPTSHVVEY 152
TIAAI T G G + IVR+SG + DI+ RVF P+ K+ K + R Y
Sbjct: 5 TIAAISTPSG--TGGISIVRMSGSKSFDIISRVFSPINGKELDKDKDNRKMR-------Y 55
Query: 153 GVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
GV+ DR G +DEV+ M P +YTRED+ E+ CHGS V ++++L L+ G +A+ G
Sbjct: 56 GVIKDRKGETIDEVMVCFMKGPFTYTREDICEINCHGSFVSVKKILNLLLDEGCDMAEGG 115
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQAE V +I++ + + ++ +QG ++S+R ++ L+
Sbjct: 116 EFTKRAFLNGRIDLSQAEAVLDIINSTNDLSQKESIHQLQGSVKEKISSIRQDLLDALSR 175
Query: 273 IEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
+E ++F ++ L+ + ++ + ++ L T+N K+L+ G+ I+G+PNVGKS
Sbjct: 176 LEYSINFTEDGEDLSPDEIISYMEKAKATIDKLLNTSNKGKILRDGINTTIIGKPNVGKS 235
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLN K RAIVT++ GTTRD+I ++ + + DTAGIRETDD+VEKIGV++S
Sbjct: 236 SLLNKMLKENRAIVTDVPGTTRDLITEYISFGDFTLKINDTAGIRETDDLVEKIGVDKSI 295
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
+ +D+II + ED ++++ I+ I+++NK D +++
Sbjct: 296 ELIDESDLIIAIFDTSRPFDKEDEKIIDLIKGRN--------AIIILNKADLEDKFFHDF 347
Query: 453 NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV---NQRQCEQLMRT 509
++V + T +GI LE AI ++ I +R +V N R E+L+
Sbjct: 348 DQV------TIKTSMAQDEGIDKLEEAITEMFNTKDI----KRESVLITNTRH-ERLL-- 394
Query: 510 KEALVRLKSS---IEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
KEA +L S I+ +PLD +DLR A LG I GE +S+E++ +F +FC+GK
Sbjct: 395 KEASNKLSESLVDIKRGIPLDACEVDLRGAYDDLGFIIGEAVSDEIMDKVFKEFCVGK 452
>gi|85057945|ref|YP_456861.1| tRNA modification GTPase TrmE [Aster yellows witches'-broom
phytoplasma AYWB]
gi|123518017|sp|Q2NIG1.1|MNME_AYWBP RecName: Full=tRNA modification GTPase MnmE
gi|84790050|gb|ABC65782.1| tRNA modification GTPase [Aster yellows witches'-broom phytoplasma
AYWB]
Length = 460
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 162/484 (33%), Positives = 271/484 (55%), Gaps = 37/484 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G G V ++R+SG ++ + ++FK G + +H +
Sbjct: 3 FDTIAAISTPLG--TGGVSVIRVSGNNSITEINKIFK----------GKNLIKAKTHTIT 50
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
+G +L++ ++DEVL P S+T E+VVE+ HG + + VL L LA P
Sbjct: 51 HGFILNKDQTILDEVLISVFKTPNSFTGENVVEINAHGGILITQMVLERILSLDIRLAFP 110
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEF+ RA+LNG++DL QAE++ LI A + A A +G+Q S LVTS+R + + L+
Sbjct: 111 GEFSQRAYLNGKMDLIQAESIMDLIHATNENAIKIANSGLQKYTSQLVTSLRDQILNLIA 170
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+IE +D+ D++P + + ++ ++ + +EN L ++ ++ L+ G++ I+GRPNV
Sbjct: 171 QIEVNIDYPEYDDIPQITQQKIALEVQSLIKQLENILSHSHKNRYLKEGIKTLIIGRPNV 230
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA+ +AIV++I+GTTRD +EA G + L+DTAGIR+TDD +EKIG+
Sbjct: 231 GKSSLLNAFLNENKAIVSDISGTTRDFVEAYFNCRGFTLHLIDTAGIRKTDDPIEKIGIL 290
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
R+E + L A++I++ + + ED +LL Q + P I++ NK+D
Sbjct: 291 RTEKMLLQAELILLVLDQSNYLQEEDIQLLQLTQ--------NYPRIIIGNKVDL----- 337
Query: 450 NEWNKVGNSFNDH---------VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQ 500
+ +K+ +S D+ + ++ G +L+ I+K L+ I + N
Sbjct: 338 -KSDKLISSLCDYSSQLTPQEIISVSSLDKTGFFELQQTILKKFQLNDIKPKDFNYFSNA 396
Query: 501 RQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKF 560
R Q+ + L+ ++ + +P+D ++IDL A ALGQI GE+ ++ +F KF
Sbjct: 397 RHINQIQIALRSFQDLQQALLQSMPIDIYSIDLTKAYQALGQIIGENQENSLIKELFSKF 456
Query: 561 CIGK 564
C+GK
Sbjct: 457 CLGK 460
>gi|291521111|emb|CBK79404.1| tRNA modification GTPase trmE [Coprococcus catus GD/7]
Length = 458
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 177/482 (36%), Positives = 268/482 (55%), Gaps = 39/482 (8%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI S G +G VRLSG AV IV R+++ +K+ S S +H + YG
Sbjct: 5 TIAAI--STGMTNAGIGKVRLSGDDAVTIVDRIYRSPGGRKRLSDVS------THTIHYG 56
Query: 154 VVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+ D G+ ++DEV+ + M P SYTREDVVE+ CHG V ++++L L+ GA LA+PG
Sbjct: 57 YIYD--GDCLIDEVMVLIMRGPNSYTREDVVEIDCHGGVVVMKKLLETVLKYGARLAEPG 114
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DLSQAE V +I+AKS A +++L ++G + +R I +
Sbjct: 115 EFTKRAFLNGRIDLSQAEAVIDVINAKSDMALESSLNQLRGSVKKSIEKLRKGIIGNIAF 174
Query: 273 IEARLD---------FDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAI 323
IEA LD F DE+ ++ +++ L++A+ +L++ G++ I
Sbjct: 175 IEAALDDPEHIQAEGFGDELAV--------QVRGYMAELQKMLDSADNGRLVKEGIKTVI 226
Query: 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383
+G+PN GKSSL+N RAIVTEIAGTTRD +E V++ G+P+ ++DTAGIR+T+D+V
Sbjct: 227 LGKPNAGKSSLMNVLLGENRAIVTEIAGTTRDTLEEHVSIHGIPLNIIDTAGIRQTEDVV 286
Query: 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443
EKIGV ++ A AD+II V + D +++ IQS K +I+++NK D
Sbjct: 287 EKIGVRKAIDFAEEADLIIYVVDSSTEMDQNDDDIIRMIQSKK--------VIVLMNKSD 338
Query: 444 CAPSASNEWNKVGNSFNDHVFTCAVTGQ-GIQDLETAIMKIVGLHQIPAGGRRWAVNQRQ 502
P S + + + + + G+ E + + I N R
Sbjct: 339 LRPVVSR--SDIEKQLQAPIIEISAREETGLDIFEDTLKDMFFAGDIHYNDELCITNVRH 396
Query: 503 CEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCI 562
+ E+L + SIE+ +P DF++IDL DA LG I GE + ++++ IF FC+
Sbjct: 397 KAAIAAALESLKMVMHSIEDGMPEDFFSIDLMDAYEQLGHIIGEAVEDDLVDTIFSDFCM 456
Query: 563 GK 564
GK
Sbjct: 457 GK 458
>gi|289422583|ref|ZP_06424426.1| tRNA modification GTPase TrmE [Peptostreptococcus anaerobius 653-L]
gi|289157155|gb|EFD05777.1| tRNA modification GTPase TrmE [Peptostreptococcus anaerobius 653-L]
Length = 459
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 167/447 (37%), Positives = 260/447 (58%), Gaps = 17/447 (3%)
Query: 119 AVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAVPMLAPRSYT 178
++ I +FKP K+ P +V YG ++D V+DEVL M P SYT
Sbjct: 29 SIAIASSIFKPFYKENLLD------YPNRSLV-YGNIVDSD-RVIDEVLIARMEGPNSYT 80
Query: 179 REDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISA 238
EDVVE+ CHG + ++++L L+ GA LA PGEFT RAFLNGR+DLSQAE V +I+A
Sbjct: 81 AEDVVEINCHGGFISVKKILELVLKKGARLADPGEFTKRAFLNGRIDLSQAEAVIDIINA 140
Query: 239 KSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHA 297
K+ + D A ++G S V S+R E+L ++E +D+ ++++ + + DK
Sbjct: 141 KTDQSHDIAQTQLEGALSQKVRSLRNMITEVLAQVEVSIDYPEEDIEFITYKELTDKTSQ 200
Query: 298 MSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVI 357
+ ++V ET++ K+L+ GL+ AI+G+PNVGKSSL+N RAIVTEIAGTTRDVI
Sbjct: 201 IQKEVVKMYETSDTGKILREGLKTAILGKPNVGKSSLMNWILGENRAIVTEIAGTTRDVI 260
Query: 358 EASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSE 417
E V + G+P+ ++DTAGIRETDDIVEKIGVE+S +D++++ + + +D E
Sbjct: 261 EEFVNIKGIPLKIVDTAGIRETDDIVEKIGVEKSRDHMKSSDLVLVVLDSSRELEEDDLE 320
Query: 418 LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLE 477
+L+ I N K T +++INKID + K + + + A+ +G++ +
Sbjct: 321 ILDAI--NPKKT------LVLINKIDLESRLDMDKVKEYIAEENIIHISAMENKGLESIH 372
Query: 478 TAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAA 537
I +V ++ G N R + + + ++ +E+ + DF +DL+DA
Sbjct: 373 DKIETMVYEGRVSNKGDVMITNTRHKDAIYKAMNSINDAIKGLEDHMSYDFIGVDLKDAW 432
Query: 538 LALGQISGEDISEEVLSNIFGKFCIGK 564
+LG I+G+ ++E++L IF FCIGK
Sbjct: 433 DSLGFINGDTVTEDLLDTIFKNFCIGK 459
>gi|126695547|ref|YP_001090433.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT
9301]
gi|166234804|sp|A3PAQ7.1|MNME_PROM0 RecName: Full=tRNA modification GTPase MnmE
gi|126542590|gb|ABO16832.1| putative thiophen / furan oxidation protein [Prochlorococcus
marinus str. MIT 9301]
Length = 460
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 166/462 (35%), Positives = 256/462 (55%), Gaps = 26/462 (5%)
Query: 106 PGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGN-VVD 164
G V I+R+SG A++ ++ + K +W SH V G + + N +D
Sbjct: 22 KGGVAIIRVSGKDAINSCKKIVQTKSKY--------AWE--SHRVFRGFIQENKQNKFID 71
Query: 165 EVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT--LAQPGEFTLRAFLNG 222
EVL + M +P S+T EDVVEL CHG + + +VL+ L + + +A PGEF+ RAFLNG
Sbjct: 72 EVLILVMKSPNSFTGEDVVELHCHGGIIIVNKVLKILLSSNSRVRIANPGEFSQRAFLNG 131
Query: 223 RLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDE 282
++DL+QAE++ +LI+A + +A+ A +GIQG + ++ I L EIEAR+DF+++
Sbjct: 132 KIDLTQAESINQLINASNTRSAELAFSGIQGEIKKKIDDIKNDLINQLCEIEARVDFEED 191
Query: 283 MPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSE 342
+ + I + + +E +E A + + +G+ IA++G+ NVGKSSLLN +K E
Sbjct: 192 FTDFDYTKYLKNIKKVKEKIELLIENAKRNSYIHNGISIALIGKTNVGKSSLLNLLAKKE 251
Query: 343 RAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVII 402
+AIVT I GTTRDVIE ++T+ +P+ ++DTAGIRET + +E IG+++S +D II
Sbjct: 252 KAIVTNIPGTTRDVIEVNLTINDIPMKIIDTAGIRETYEQIESIGIKKSFGKIKESDFII 311
Query: 403 MTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDH 462
S +G+ ED +++ I K T L IDC SNE +
Sbjct: 312 YIYSLEEGFNEEDKKIIQEIPKEKLITILGNKKDL----IDCKNINSNE-------LKNT 360
Query: 463 VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEE 522
+ G + L I+K GL Q+ +N+R L L IE
Sbjct: 361 ILMSIKNNDGEKLLIDTIIKKCGLKQVE--NINIFLNERHQTNLSACLSNLNDTDEIIEN 418
Query: 523 ELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+LP D +I+LRD L +I+G++++EE+L NIF KFCIGK
Sbjct: 419 KLPFDLLSIELRDGIQNLSKITGQELTEELLDNIFSKFCIGK 460
>gi|302872910|ref|YP_003841546.1| tRNA modification GTPase TrmE [Caldicellulosiruptor obsidiansis
OB47]
gi|302575769|gb|ADL43560.1| tRNA modification GTPase TrmE [Caldicellulosiruptor obsidiansis
OB47]
Length = 455
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 179/477 (37%), Positives = 271/477 (56%), Gaps = 28/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G G +GIVR+SG A D+ G++ VK +K KS R
Sbjct: 3 FDTIVAISTPVG--TGGIGIVRISGKDAYDVAGKL---VKSRKYKSIHDIPVR------- 50
Query: 152 YGVVLDRHG--NVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
Y ++D + VDE + + +PRSYT EDVVE+Q HG V L+R+L A ++ GA A
Sbjct: 51 YAALVDVYDGDEFVDEAILIKFKSPRSYTGEDVVEIQSHGGMVVLKRILEAAIKNGARHA 110
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
PGEFT RAFLNG++DLSQAE V +I++K+ A ++G S + + + L
Sbjct: 111 MPGEFTKRAFLNGKIDLSQAEAVIDIINSKTKLLQQNAAKQLKGMLSQRIEEISQLLLNL 170
Query: 270 LTEIEARLDFDD-EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+ IEA +DF + E+ ++ + ++ I +E +++ K ++SG+ IVGRPN
Sbjct: 171 VATIEASIDFSEHEVDEVSHDEILSTIDDALAKIEKLIKSYETGKAIKSGIYTVIVGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN K E+AIVT+I GTTRDVIE + + G+P+ L DTAG+R T+D+VEKIGV
Sbjct: 231 VGKSSLLNRLLKEEKAIVTDIPGTTRDVIEEVLDIEGLPIILADTAGVRRTEDVVEKIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ER+ AD+++ V + G ED E+ I+ + ++++NKID
Sbjct: 291 ERTLKSIERADLVLFMVES-SGILQEDLEIFETIKDKR--------FVVLVNKIDREVKV 341
Query: 449 SNEWNKVGNSF-NDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
S + + F + +F + ++ +E AI V I A N R E L+
Sbjct: 342 SQ--DDIKRIFGKEGIFISVEHDKNLELVEKAIAHEVLSQNIEAFDSVLITNLRHKELLL 399
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ KE L+ K++I +PLD +ID+++A L QI+G++++E+++ IF FCIGK
Sbjct: 400 KAKEFLLSAKANI-FSVPLDILSIDIKNALENLYQITGKNVTEDMVDRIFSMFCIGK 455
>gi|222530701|ref|YP_002574583.1| tRNA modification GTPase TrmE [Caldicellulosiruptor bescii DSM
6725]
gi|222457548|gb|ACM61810.1| tRNA modification GTPase TrmE [Caldicellulosiruptor bescii DSM
6725]
Length = 455
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 179/477 (37%), Positives = 271/477 (56%), Gaps = 28/477 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T IG G +GIVR+SG A DI ++ + K K K PT
Sbjct: 3 FDTIVAISTPIG--TGGIGIVRISGKNAFDIAQKLIRSRKYKTVKDI------PT----R 50
Query: 152 YGVVLDRHG--NVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
Y ++D + VDE + + +P SYT EDVVE+Q HG V L+R+L A +++GA A
Sbjct: 51 YAALVDVYDGDEFVDEAILIKFKSPNSYTGEDVVEIQSHGGMVVLKRILEAAIKSGARHA 110
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
PGEFT RAFLNGR+DLSQAE V +I++K+ A ++G S + + + +
Sbjct: 111 MPGEFTKRAFLNGRIDLSQAEAVIDIINSKTRLLQQNAAKQLKGMLSQRIEEISQLLLNM 170
Query: 270 LTEIEARLDFDD-EMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+ IEA +DF + E+ ++ + ++ I A +E +++ K ++SG+ IVGRPN
Sbjct: 171 VASIEASIDFSEHEVDEVSKDEILFTIDAALAKIEKLIKSYETGKAIKSGIYTVIVGRPN 230
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN K E+AIVT+I GTTRDVIE + + GVP+ L DTAG+R+T+DIVEKIGV
Sbjct: 231 VGKSSLLNRLLKEEKAIVTDIPGTTRDVIEEVLDIEGVPIILADTAGVRKTEDIVEKIGV 290
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
+++ AD+++ V + G ED E+ I++ + I+++NKID
Sbjct: 291 KKTLESIERADLVLFMVES-SGILQEDLEIFEAIKNKR--------FIVIVNKIDKEVKV 341
Query: 449 SNEWNKVGNSF-NDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
S + + F + +F + ++ +E AI V I N R E L+
Sbjct: 342 S--QDDIKRIFGKEGIFISVERDKNLELVEKAIANEVLNQNIETHDSVLITNLRHKELLL 399
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ KE LV K ++ +PLD +ID+++A +L QI+G++++E+++ IF FCIGK
Sbjct: 400 KAKEFLVSAKENM-YAVPLDILSIDIKNALDSLYQITGKNVTEDMVDRIFSMFCIGK 455
>gi|402833295|ref|ZP_10881915.1| tRNA modification GTPase TrmE [Selenomonas sp. CM52]
gi|402281287|gb|EJU29978.1| tRNA modification GTPase TrmE [Selenomonas sp. CM52]
Length = 459
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 179/478 (37%), Positives = 265/478 (55%), Gaps = 31/478 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI+AI T+ G G VGIVRLSG A++ R+F +K +G+ YG
Sbjct: 6 TISAIATAAG--EGGVGIVRLSGASAIETASRMFCAAGGRKLADAGARDLL-------YG 56
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
V+ G +VDE L + M AP SYT+EDVVELQCHG V LR VL GA A+ GE
Sbjct: 57 TVVREDGRLVDEALCLVMRAPHSYTKEDVVELQCHGGFVSLREVLALTYRHGARAAERGE 116
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGRLDL++A+ V ++ AK+ + A + G FS + S+R + LL +
Sbjct: 117 FTKRAFLNGRLDLAEAQAVMDVVQAKTEKGLEMAAGHLAGHFSERIRSMREDILALLAHL 176
Query: 274 EARLDFDDE-MPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
EA +DF +E + + + +K+ A+ + ++TA+ ++L+ GL+ AIVG+PNVGKS
Sbjct: 177 EAVIDFPEEGVDEIVVEEAREKVSALHASLRRIVQTAHTGRILRDGLETAIVGKPNVGKS 236
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNA + +RAIVT++ GTTRD IE V + GVP+ ++DTAGIR T+D VE+IGVE++
Sbjct: 237 SLLNALLREDRAIVTDVPGTTRDTIEEYVDIGGVPLRIIDTAGIRATEDAVERIGVEKAR 296
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKK---STESSTPMILVINKIDCAPSAS 449
A A +++ ED E+L ++ T+S P +L ++
Sbjct: 297 AHVKSAALVLALFDGSRPLEVEDEEILALLEGKDALIIVTKSDLPRVLDTERLQNLA--- 353
Query: 450 NEWNKVGNSFNDHVFTCAVTG---QGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
H+ +T +GI L AI++ V + G + + R L
Sbjct: 354 ------------HLPLIEITTKEEEGISPLAAAILEKVYDGEERLGEGSFVADLRTKNLL 401
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ L S++++ L LDF +IDLR + LG+I+GE + ++VL IF +FC+GK
Sbjct: 402 EAAADHLTAAISTMDQGLGLDFISIDLRSSLEKLGEITGETVGDDVLDEIFSRFCVGK 459
>gi|429727428|ref|ZP_19262200.1| tRNA modification GTPase TrmE [Peptostreptococcus anaerobius VPI
4330]
gi|429152586|gb|EKX95404.1| tRNA modification GTPase TrmE [Peptostreptococcus anaerobius VPI
4330]
Length = 459
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 167/447 (37%), Positives = 260/447 (58%), Gaps = 17/447 (3%)
Query: 119 AVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAVPMLAPRSYT 178
++ I +FKP K+ P +V YG ++D V+DEVL M P SYT
Sbjct: 29 SIAIASSIFKPFYKENLLD------YPNRSLV-YGNIVDSD-RVIDEVLIARMEGPNSYT 80
Query: 179 REDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISA 238
EDVVE+ CHG + ++++L L+ GA LA PGEFT RAFLNGR+DLSQAE V +I+A
Sbjct: 81 AEDVVEINCHGGFISVKKILELVLKKGARLADPGEFTKRAFLNGRIDLSQAEAVIDIINA 140
Query: 239 KSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHA 297
K+ + D A ++G S V S+R E+L ++E +D+ ++++ + + DK
Sbjct: 141 KTDQSHDIAQTQLEGALSQKVRSLRNMITEVLAQVEVAIDYPEEDIEFITYKELTDKTSQ 200
Query: 298 MSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVI 357
+ ++V ET++ K+L+ GL+ AI+G+PNVGKSSL+N RAIVTEIAGTTRDVI
Sbjct: 201 IQKEVVKMYETSDTGKILREGLKTAILGKPNVGKSSLMNWILGENRAIVTEIAGTTRDVI 260
Query: 358 EASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSE 417
E V + G+P+ ++DTAGIRETDDIVEKIGVE+S +D++++ + + +D E
Sbjct: 261 EEFVNIKGIPLKIVDTAGIRETDDIVEKIGVEKSRDHMKSSDLVLVVLDSSRELEEDDLE 320
Query: 418 LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLE 477
+L+ I N K T +++INKID + K + + + A+ +G++ +
Sbjct: 321 ILDAI--NPKKT------LVLINKIDLESRLDMDKVKEYIAEENIIHISAMENKGLESIH 372
Query: 478 TAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAA 537
I +V ++ G N R + + + ++ +E+ + DF +DL+DA
Sbjct: 373 DKIETMVYEGRVSNKGDVMITNTRHKDAIYKAMNSINDAIKGLEDHMSYDFIGVDLKDAW 432
Query: 538 LALGQISGEDISEEVLSNIFGKFCIGK 564
+LG I+G+ ++E++L IF FCIGK
Sbjct: 433 DSLGFINGDTVTEDLLDTIFKNFCIGK 459
>gi|422851541|ref|ZP_16898211.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK150]
gi|325694429|gb|EGD36338.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis
SK150]
Length = 457
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 167/477 (35%), Positives = 269/477 (56%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G GA+GIVRLSG + I ++FK G + SH +
Sbjct: 6 FDTIAAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKNLSKVESHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D ++ ++DEV+ M +P+++TRED++E+ HG +L+ + GA +A+
Sbjct: 54 YGHIVDPQNQEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G +L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLFNLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + N L TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTQLMREKTAEFEALLSNLLNTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN ++AIVT+I GTTRDVIE V + GVP+ L+DTAGIRETDD+VE+IGV
Sbjct: 234 VGKSSLLNNLLCEDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL + I+++NK D
Sbjct: 294 ERSKKALQEADLVLLVLNASEPLTDQDRQLL--------EISKGSNRIVLLNKTDL---- 341
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
E ++ D + + Q I +E I ++ + I + N R +
Sbjct: 342 -EEKIELDQLPADAIKISVLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIE 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 401 KALESLQAVNQGLEMGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|313675601|ref|YP_004053597.1| tRNA modification GTPase trme [Marivirga tractuosa DSM 4126]
gi|312942299|gb|ADR21489.1| tRNA modification GTPase trmE [Marivirga tractuosa DSM 4126]
Length = 457
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 168/476 (35%), Positives = 274/476 (57%), Gaps = 31/476 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI A+ T+ G GA+ ++RLSG A+ I VFK G + SH +G
Sbjct: 8 TIIALSTAPG--VGAIAVIRLSGEDAITITNSVFK----------GKNLLQQKSHTAHFG 55
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ + G ++DEV+A +AP S+T+E+VVE+ CHGS ++R+++ L G LA+ GE
Sbjct: 56 TIRNDEGEIIDEVVATLFIAPHSFTKENVVEISCHGSPYIVQRLIKLFLTKGVRLAKAGE 115
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNG+ DL+QAE V LI+A + A+ AAL ++GGFS + +RA+ I + I
Sbjct: 116 FTQRAFLNGQFDLAQAEAVADLINADTEASHKAALNQMRGGFSEQIKQLRAELIHFASMI 175
Query: 274 EARLDFDDEMPPL----NLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
E LDF +E +L +++++ ++ + ++ + N ++++G+ I G+PN
Sbjct: 176 ELELDFGEEDVEFADRDDLKKLVNQLLSVITALVSSFDLGN---VIKNGVPTVIAGKPNT 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKS+LLNA E+AIV++IAGTTRD IE + + GV +DTAG+R+T+D VE IGV+
Sbjct: 233 GKSTLLNALLNEEKAIVSDIAGTTRDFIEDEINLEGVVFRFIDTAGLRDTEDKVEAIGVQ 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS-A 448
R++ A +I+ + +E + +N +++ P I V NK+D A
Sbjct: 293 RTKDKMKQASLIVYMFDLKNDTLTEVNRDINMLEN------LGIPFIKVGNKLDEAQQDL 346
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
NE K N+ +F A+ +G++ L+T +++ V L G N R + L++
Sbjct: 347 YNEMKKDKNT----LFISAINKEGLEALKTKLVETVNLDNFKTGD-TVVTNIRHYDNLVQ 401
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
T+ +L + +++ + DF +D+R A LG+I+GE ++++L+NIF KFCIGK
Sbjct: 402 TQNSLNAVLRGLDDNITGDFLALDIRHALRFLGEITGEITTDDLLANIFSKFCIGK 457
>gi|291526551|emb|CBK92138.1| tRNA modification GTPase trmE [Eubacterium rectale DSM 17629]
Length = 458
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 175/476 (36%), Positives = 278/476 (58%), Gaps = 27/476 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++ P +GI+R+SG A+ ++ R++K KKK S+ SH + YG
Sbjct: 5 TIAAIATAM--SPSGIGIIRISGDDALSVIDRIYKSKNNKKKISA------CQSHTIHYG 56
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ D + DEV+ + M AP +YTRED VE+ CHG ++RVL A ++ GA A+PGE
Sbjct: 57 FIYDGDEKI-DEVMVLLMKAPNTYTREDTVEIDCHGGVYVMKRVLEAVIKNGARPAEPGE 115
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGR+DLSQAE+V +I++K+ A ++L+ + G + +R + + + I
Sbjct: 116 FTKRAFLNGRIDLSQAESVIDVINSKNDFALKSSLSQLGGAVLGSIRQIREQLLHEIAFI 175
Query: 274 EARLDFDDEMP----PLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
E+ LD + + P L ++D + +++ L+T++ ++L+ G+ I+G+PN
Sbjct: 176 ESALDDPEHISLDGYPQKLRAIVDNEYV---EIDGLLKTSDNGRILKEGINTVIIGKPNA 232
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLN SERAIVT+IAGTTRDV+E + + G+ + L+DTAGIR T+D+VEKIGV+
Sbjct: 233 GKSSLLNVLVGSERAIVTDIAGTTRDVLEEQINIGGITLNLVDTAGIRSTEDVVEKIGVK 292
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
++ A AD+II V + D +++N I+ K ++++NK D A S
Sbjct: 293 KAMEHADEADLIIYVVDSSVVLDDNDYDIINFIKDKKA--------VILLNKSDLASKVS 344
Query: 450 NEWNKVGNSFNDHVFTC-AVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+ + + V + A GI L I ++ Q+ + N R + L
Sbjct: 345 --ADDIKKLVDKTVISVSAKESSGIDGLSDTIKEMFFDGQVSFNDEIYITNIRHKKLLSD 402
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
KE+L + +SI++++P DF++IDL A +LG I GE + ++++ IF KFC+GK
Sbjct: 403 AKESLKLVMNSIDDDMPEDFYSIDLMSAYESLGLIIGESVEDDLMDEIFSKFCMGK 458
>gi|255033904|ref|YP_003084525.1| tRNA modification GTPase TrmE [Dyadobacter fermentans DSM 18053]
gi|254946660|gb|ACT91360.1| tRNA modification GTPase TrmE [Dyadobacter fermentans DSM 18053]
Length = 455
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 171/462 (37%), Positives = 258/462 (55%), Gaps = 32/462 (6%)
Query: 107 GAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEV 166
GA+G++R+SG ++ +V VFK G SH V +G + ++DEV
Sbjct: 22 GAIGVIRVSGLGSIAMVNSVFK----------GKNLENAESHTVHFGTIFSGD-EIIDEV 70
Query: 167 LAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDL 226
L PRS+T+ED VE+ CHGS+ +R++L+ + GA +A+PGEFT RAFLNG+ DL
Sbjct: 71 LVTVFKTPRSFTKEDSVEISCHGSDYIIRQILKVLILKGARIAKPGEFTQRAFLNGQFDL 130
Query: 227 SQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPL 286
QAE V LI+A S A+ AL ++GGFS + S+RA+ I + IE LDF +E
Sbjct: 131 VQAEAVADLIAADSQASHKTALNQLRGGFSKKLASLRAELIHFASLIELELDFGEEDVEF 190
Query: 287 ----NLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSE 342
+L ++D A+ +E + + ++ ++ G+ +AI+G PNVGKS+LLNA E
Sbjct: 191 AQRDDLRRLID---ALLSTIEPLISSFDFGNAIKEGVPVAIIGSPNVGKSTLLNALLNEE 247
Query: 343 RAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVII 402
+AIVT IAGTTRDVIE ++ + G+ +DTAGIRET D+VE IG+ERS+A AD++I
Sbjct: 248 KAIVTSIAGTTRDVIEDTIVLDGLKFRFIDTAGIRETTDVVESIGIERSKAAMDKADIVI 307
Query: 403 MTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDH 462
+ + T D+ L + K ++ V+NK D P ++E + D
Sbjct: 308 FLFDSAE--TLADNRALAALLPAGK------EVLFVLNKTDINPLLASELS------GDA 353
Query: 463 VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEE 522
++ Q+L K+V L A G N R E LM+T ++L + + +
Sbjct: 354 SDIIPISAHTQQNLPVLTSKLVSLVHGQAAGDTVVTNLRHYEHLMKTSDSLTDVLNGLSL 413
Query: 523 ELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ DF D+R A LG+I+G ++++L NIF +FCIGK
Sbjct: 414 GVTGDFLAQDIRLALHHLGEITGTIATDDLLENIFSRFCIGK 455
>gi|312794739|ref|YP_004027662.1| tRNA modification gtpase trme [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312181879|gb|ADQ42049.1| tRNA modification GTPase TrmE [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 455
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 273/480 (56%), Gaps = 34/480 (7%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T IG G +GIVR+SG A DI ++ ++ +K KS R
Sbjct: 3 FDTIAAISTPIG--TGGIGIVRISGKDAFDIAEKL---IRSRKYKSIKDIPAR------- 50
Query: 152 YGVVLDRHG--NVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLA 209
Y ++D + VDE + + +P SYT ED+VE+Q HG V L+R+L A ++ GA A
Sbjct: 51 YAALVDVYDGDEFVDEAILIKFKSPHSYTGEDIVEIQSHGGMVVLKRILEAAIKNGARHA 110
Query: 210 QPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIEL 269
PGEFT RAFLNGR+DLSQAE V +I++K+ A ++G S + + + L
Sbjct: 111 MPGEFTKRAFLNGRIDLSQAEAVIDIINSKTRLLQQNAAKQLKGMLSQRIEEISQLLLNL 170
Query: 270 LTEIEARLDFD----DEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVG 325
+ IEA +DF DE+P ++ + A Q ++ L++ K ++SG+ IVG
Sbjct: 171 VASIEASIDFSEHEVDEVPHTE---ILSTVDAALQKIDKLLKSYETGKAIKSGIYTVIVG 227
Query: 326 RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEK 385
RPNVGKSSLLN K E+AIVT+I GTTRDVIE + + G+P+ L DTAG+R+T+D+VEK
Sbjct: 228 RPNVGKSSLLNRLLKEEKAIVTDIPGTTRDVIEEVLDIEGIPIILADTAGVRKTEDVVEK 287
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445
IGV+++ AD+++ + + G ED E+ I+ + I+++NKID
Sbjct: 288 IGVKKTLESIERADLVLFMIES-SGILQEDLEIFETIKDKR--------FIVLVNKIDKE 338
Query: 446 PSASNEWNKVGNSF-NDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCE 504
S+E + F + +F + ++ +E AI V I A N R E
Sbjct: 339 VKVSHE--DIKRIFGKEGIFISVEHDKNLELVEKAIANEVLDKDIEAFDSVLITNLRHKE 396
Query: 505 QLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L++ KE L+ K ++ + +PLD +ID+++A +L QI+G++++E+++ IF FCIGK
Sbjct: 397 LLLKAKEFLLSAKENL-DCVPLDILSIDIKNALESLYQITGKNVTEDMVDRIFSMFCIGK 455
>gi|332655106|ref|ZP_08420847.1| tRNA modification GTPase TrmE [Ruminococcaceae bacterium D16]
gi|332515966|gb|EGJ45575.1| tRNA modification GTPase TrmE [Ruminococcaceae bacterium D16]
Length = 457
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 181/472 (38%), Positives = 261/472 (55%), Gaps = 20/472 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAA+ T P A+GI+RLSGP AV+ F+P + + +H + YG
Sbjct: 5 TIAAMATP--AVPSAIGILRLSGPRAVETASACFRPAAGNRLEDH-------PAHKLVYG 55
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+LD G V+D+VL P SYT ED ELQCHGS + L L A GA A PGE
Sbjct: 56 SLLDAQGEVIDQVLCTYSRGPGSYTGEDTAELQCHGSPMVLTLGLEALFAQGARQAGPGE 115
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGRLDL+QAE V L+ A+S A A + G S V + + ++++
Sbjct: 116 FTQRAFLNGRLDLAQAEAVADLLDARSREGARHAAGRLSGALSRRVGQIYSALVDVMAHF 175
Query: 274 EARLDFDDE-MPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
A LD+ DE + P L + D + A S+ + + L T + L G++ A+VGRPN GKS
Sbjct: 176 HAVLDYPDEDIDPFTLTKLEDDLSAQSRALHDLLATYQRGRRLNQGVRCALVGRPNAGKS 235
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLNA +RAIVT+I GTTRD +EA V + GVP+ L+DTAG+R++ D +E++GVERS
Sbjct: 236 SLLNALVGYDRAIVTDIPGTTRDTLEAEVELGGVPLRLIDTAGLRDSSDPIERLGVERSR 295
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
A++I++ + T ED ELL ++ S P IL+ K D PSA +
Sbjct: 296 QAMEEAELILVLWDSSVPATQEDGELL-------ETALSLAPTILIHTKTDL-PSAPVPF 347
Query: 453 NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEA 512
+ + V TG+G+ DLE A+ ++ A G + N RQ + R E
Sbjct: 348 LNL-SPLPPVVELSTKTGEGLADLEAAVAQLFPKGSDSAYGELLS-NARQAQAAQRALEG 405
Query: 513 LVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ R + ++E + D D+ +A ALG+++G+ + E+V + IF +FC+GK
Sbjct: 406 VERARQALEAGMTPDALLTDVEEALQALGELTGQSVGEDVTARIFQRFCVGK 457
>gi|407475365|ref|YP_006789765.1| tRNA modification GTPase MnmE [Clostridium acidurici 9a]
gi|407051873|gb|AFS79918.1| tRNA modification GTPase MnmE [Clostridium acidurici 9a]
Length = 461
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 177/478 (37%), Positives = 274/478 (57%), Gaps = 24/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPM--AVDIVGRVFKPVKKKKKKSSGSGSWRPTSHV 149
TIAAI T PPG GI + A+DI ++F KK K
Sbjct: 3 IDTIAAIAT----PPGEGGIGIIRISGKDALDIGNKIFLNRDKKTLKD-------LEERK 51
Query: 150 VEYGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ YG ++ + +DEV+ V + P++YT EDVVE+ CHG + +RR+L A LE+GA L
Sbjct: 52 LNYGYAINPKSSKKIDEVMIVFIKGPKTYTTEDVVEVHCHGGTIPVRRILEAVLESGARL 111
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNGR+DL+QAE V LISAK+ ++ D +L ++G S V+++ + +E
Sbjct: 112 AEPGEFTKRAFLNGRIDLAQAEAVMDLISAKTDSSFDVSLKQLEGSISKEVSNMMSTMLE 171
Query: 269 LLTEIEARLDFDDE--MPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L IEA +DF +E + + + D ++ + +E L+T K+L+ GL+ I+G+
Sbjct: 172 MLAHIEASIDFPEEHDVDEITYGQLEDGGKSILEKIEKLLDTVYTGKVLREGLKTVILGK 231
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSL+NA + RAIVT+I GTTRD+IE V + G+P+ ++DTAGIRET+D+VEKI
Sbjct: 232 PNVGKSSLMNAILRESRAIVTDIPGTTRDIIEEYVNIKGIPLKIIDTAGIRETEDLVEKI 291
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GV++++ + +D+ I+ ED E++ ++ +KKS I+++NK D
Sbjct: 292 GVDKAKEILENSDLSIVVFDVSRELDDEDLEIIELVK-HKKS-------IVLLNKTDLPK 343
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
E K + T V G+GI LE + + +I + R QL
Sbjct: 344 KIDEEDIKRYLPNTAIINTAIVAGRGIDILEDTLKSMFLSSEIQIKDNTIVTSVRHRNQL 403
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++ KE + SI +P+D +D+++A LG+I+G+ + E+++ IF FCIGK
Sbjct: 404 LKAKENMKDALESINLGVPIDCVEVDIKNAYENLGEITGDTVGEDIIDKIFKDFCIGK 461
>gi|123967744|ref|YP_001008602.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. AS9601]
gi|166234808|sp|A2BNY4.1|MNME_PROMS RecName: Full=tRNA modification GTPase MnmE
gi|123197854|gb|ABM69495.1| putative thiophen / furan oxidation protein [Prochlorococcus
marinus str. AS9601]
Length = 460
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 167/463 (36%), Positives = 255/463 (55%), Gaps = 28/463 (6%)
Query: 106 PGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGN-VVD 164
G V I+R+SG A++ ++ + K +W SH V G + + N +D
Sbjct: 22 KGGVAIIRVSGKDAINSCKKIVQTKSKY--------AWE--SHRVFRGFIQENKQNKFID 71
Query: 165 EVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT--LAQPGEFTLRAFLNG 222
EVL + M +P S+T EDVVEL CHG + + +VL+ L + LA PGEF+ RAFLNG
Sbjct: 72 EVLILVMKSPNSFTGEDVVELHCHGGIIIVNKVLKILLSNNSRVRLANPGEFSQRAFLNG 131
Query: 223 RLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDE 282
++DL+QAE++ +LI+A + +A+ A +G+QG + ++ I L EIEAR+DF+++
Sbjct: 132 KIDLTQAESINQLINASNARSAELAFSGVQGEIKKKIDDIKNDLINQLCEIEARVDFEED 191
Query: 283 MPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSE 342
+ + I + + +E +E A + + +G+ IA++G+ NVGKSSLLN +K E
Sbjct: 192 FTDFDYTKYLKNIKKVKEKIELLIENAKRNSYIHNGISIALIGKTNVGKSSLLNLLAKKE 251
Query: 343 RAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVII 402
+AIVT I GTTRDVIE ++T+ +P+ ++DTAGIRET + +E IG+++S +D II
Sbjct: 252 KAIVTNIPGTTRDVIEVNLTINDIPMKIIDTAGIRETHEQIESIGIKKSFGKIKESDFII 311
Query: 403 MTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDH 462
S +G+ ED +++ I K T L IDC SNE H
Sbjct: 312 YIYSLEEGFNEEDKKIIQEIPKEKLITILGNKKDL----IDCKNINSNELK--------H 359
Query: 463 VFTCAV-TGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIE 521
++ G + L I+K GL Q+ +N R L L IE
Sbjct: 360 TILMSIKNNDGERLLIDTIIKKCGLKQVE--NINIFLNDRHLTNLSACLSNLNDTDEIIE 417
Query: 522 EELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+LP D +I+LRD L +I+G++++EE+L NIF KFCIGK
Sbjct: 418 NKLPFDLLSIELRDGIQNLSKITGQELTEELLDNIFSKFCIGK 460
>gi|309775110|ref|ZP_07670122.1| tRNA modification GTPase TrmE [Erysipelotrichaceae bacterium
3_1_53]
gi|308917065|gb|EFP62793.1| tRNA modification GTPase TrmE [Erysipelotrichaceae bacterium
3_1_53]
Length = 443
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 174/474 (36%), Positives = 268/474 (56%), Gaps = 38/474 (8%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+ GA+ I+R+SG A+ I + K+KK SH + YG
Sbjct: 5 TIAAISTA--AVDGAISIIRMSGTDALSIADSILNFNIKEKK-----------SHTISYG 51
Query: 154 VVLDR-HGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
V D+ H ++DEVL AP+++T ED+VE+ CHG +++LR CL GA LA PG
Sbjct: 52 YVYDQEHDELIDEVLVSVFHAPKTFTCEDIVEINCHGGSFITKKILRLCLAHGARLANPG 111
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNGR+DL+QAE V +I A + A A+ GI+G L+ + + ++++
Sbjct: 112 EFTQRAFLNGRIDLTQAEAVNDMIQADTNENARMAMQGIRGSVKKLLDPLLQELLDIIAN 171
Query: 273 IEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
IE +D+ D++ L+ ++ K A + ++N L+ A +LL+ G++ AIVG+PNVG
Sbjct: 172 IEVNIDYPEYDDVEQLSTEIIQPKARAWMKRIQNILDRAQSGQLLKEGIKTAIVGKPNVG 231
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNA + E+AIVT+IAGTTRD++E + + G+ + L+DTAGIRET D+VE+IG++R
Sbjct: 232 KSSLLNALLEEEKAIVTDIAGTTRDIVEGHIHLQGLTLNLIDTAGIRETSDVVEQIGIQR 291
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S A ++I+ + +D ELL K T T I+V NK D + +
Sbjct: 292 SLKAITDAQLVIVVLDNSRALDEQDRELL-------KLTRDKTR-IIVYNKTDVSKRS-- 341
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
D + A G+ I+ L I K+ HQ+ N+RQ +M+ +
Sbjct: 342 ----------DGICIAAAKGE-IEALIAEIHKLFDRHQLVL-QEPLLHNERQIALMMKAE 389
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++ + ++E + LD ID+++A +L +I GE E++L +F FC+GK
Sbjct: 390 NSMHQALEAMEAGMELDIVEIDIQNAYTSLKEILGEVHREDLLDTLFSNFCLGK 443
>gi|30248403|ref|NP_840473.1| tRNA modification GTPase TrmE [Nitrosomonas europaea ATCC 19718]
gi|46577435|sp|Q82XA1.1|MNME_NITEU RecName: Full=tRNA modification GTPase MnmE
gi|30138289|emb|CAD84297.1| GTP-binding protein (HSR1-related):tRNA modification GTPase TrmE
[Nitrosomonas europaea ATCC 19718]
Length = 451
Score = 281 bits (720), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 179/479 (37%), Positives = 269/479 (56%), Gaps = 41/479 (8%)
Query: 94 TIAAIVTSIGGPPG--AVGIVRLSG----PMAVDIVGRVFKPVKKKKKKSSGSGSWRPTS 147
TIAAI T PPG +GIVR+SG +A I+G++ P + +G S+
Sbjct: 6 TIAAIAT----PPGRGGIGIVRISGTNLESLARGILGKLPDP------RHAGLFSF---- 51
Query: 148 HVVEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
LD++ ++D+ +A+ +P SYT E+V+ELQ HG + +L CL+ GA
Sbjct: 52 --------LDQNSQIIDQGIALYFPSPHSYTGEEVLELQGHGGPAVMNLLLDRCLQLGAR 103
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
LA+PGEFTLRAFLN +LDL+QAE V LI+A + AA A+ + G FSS + + + I
Sbjct: 104 LAEPGEFTLRAFLNDKLDLAQAEGVADLIAASTANAARCAVRSLHGEFSSTIHQLVSALI 163
Query: 268 ELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L +EA LDF ++E+ L +++ + +E L + LLQ G+++ + G+
Sbjct: 164 DLRVLVEATLDFPEEEIDFLQSAHAAEQLATIRAKLEQVLVASRQGNLLQEGIKVVLAGQ 223
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN + E AIVT+I GTTRD + S+ + G+P+ L+DTAG+RET DIVE+
Sbjct: 224 PNVGKSSLLNRLAGDEVAIVTDIPGTTRDTVRQSIEIEGIPLHLIDTAGLRETSDIVEQH 283
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
G+ R+ A AD++++ V + G T ED +L R+ P++ V NKID +
Sbjct: 284 GIARTYAAIEQADLVLLLVDSRHGVTEEDRSVLTRLPER-------LPVLTVHNKIDLSA 336
Query: 447 SASN-EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
E N G + ++ A+ G+GI+ L A++K G AG + QR +
Sbjct: 337 QPPRLEENTSGPT----IYLSAINGEGIELLRAALLKTAGWQANIAGEGAYMARQRHLQA 392
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L++ KE L R + + L+ +LR A AL I+GE S+++L IF FCIGK
Sbjct: 393 LIQAKELLERAAAWLHRADQLEILAEELRLAQQALSSITGEFTSDDLLGEIFSSFCIGK 451
>gi|182416744|ref|ZP_02948141.1| tRNA modification GTPase TrmE [Clostridium butyricum 5521]
gi|237669621|ref|ZP_04529599.1| tRNA modification GTPase TrmE [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182379401|gb|EDT76896.1| tRNA modification GTPase TrmE [Clostridium butyricum 5521]
gi|237654855|gb|EEP52417.1| tRNA modification GTPase TrmE [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 460
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 176/478 (36%), Positives = 269/478 (56%), Gaps = 26/478 (5%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T IG G + I+R+SG A++I ++F P KK K + + R
Sbjct: 4 FDTICAIATPIG--EGGIAIIRISGEKALEIADKIFAPKSKKDIKDMKTYTMR------- 54
Query: 152 YGVVLDRH-GNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D +++D+V+ M PRSYT E+V+E+ CHG V RVL ++AGA +A+
Sbjct: 55 YGTIVDLDTKDIIDDVILSYMKGPRSYTGENVIEVNCHGGVVATNRVLNQIVKAGARIAE 114
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DLSQAE +I AK+ + +A+ +G S + +R + +L
Sbjct: 115 PGEFTKRAFLNGRIDLSQAEATMDIIKAKTELSMKSAMMQSKGALSKEIGELRKYLLNVL 174
Query: 271 TEIEARLDFDDEMPPLNLNLVM----DKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
IE +DF ++ + + ++ D I + + L+ A+ K+++ GL I IVG+
Sbjct: 175 ALIEYAVDFTEDDEDIVDDDLIAQIKDSITKTITRINSLLKNADEGKIIRDGLNIVIVGK 234
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN+ + +RAIVT+I GTTRD+IE + + G+P+ + DTAGIR+T+D VEKI
Sbjct: 235 PNVGKSSLLNSLLREKRAIVTDIPGTTRDIIEEYINLDGIPIKITDTAGIRDTEDTVEKI 294
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GVERS+ AD++I+ + ED +++ I K I ++NK+D
Sbjct: 295 GVERSKEKIEEADLVILMLDTSRALDDEDRVIIDAINDKK--------YIALLNKVDLEC 346
Query: 447 SASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
S E V S N + A TG GI++L+ I + +I + + N R + L
Sbjct: 347 KLSEE---VITSLNRTIEISAKTGFGIENLKEEIKNLFFNGEIDSESLIIS-NTRHKQAL 402
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
R+ E I LD +I + A ALG+I+G+++ E++L+ IF +FC GK
Sbjct: 403 YRSLEDCNLALEKINLNEYLDLISIYITSAMRALGEITGDELEEDLLNKIFSEFCCGK 460
>gi|339640643|ref|ZP_08662087.1| tRNA modification GTPase TrmE [Streptococcus sp. oral taxon 056
str. F0418]
gi|339453912|gb|EGP66527.1| tRNA modification GTPase TrmE [Streptococcus sp. oral taxon 056
str. F0418]
Length = 457
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 166/477 (34%), Positives = 271/477 (56%), Gaps = 29/477 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TI AI T +G GA+GIVRLSG + I ++FK G SH +
Sbjct: 6 FDTIVAISTPLG--EGAIGIVRLSGTDSFAIAQKIFK----------GKNLNTVASHTLN 53
Query: 152 YGVVLD-RHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
YG ++D + V+DEV+ M +P+++TRED++E+ HG +L+ + GA +A+
Sbjct: 54 YGHIVDPQSQEVLDEVMIGAMRSPKTFTREDIIEINTHGGIALTNEILQLVIREGARMAE 113
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELL 270
PGEFT RAFLNGR+DL+QAE V +I AK+ A + A+ + G S+L+ + R + + L
Sbjct: 114 PGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTL 173
Query: 271 TEIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
++E +D+ D++ + L+ +K + N L+TA K+L+ G+ AI+GRPN
Sbjct: 174 AQVEVNIDYPEYDDVEEMTTQLMREKTIEFEALLSNLLKTARRGKILREGISTAIIGRPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
VGKSSLLN + ++AIVT+I GTTRD+IE V + G+P+ L+DTAGIRET+D+VE+IGV
Sbjct: 234 VGKSSLLNNLLREDKAIVTDIEGTTRDIIEEYVNIHGIPLKLIDTAGIRETNDLVEQIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
ERS+ AD++++ ++A + T +D +LL + + + I+++NK D
Sbjct: 294 ERSKKALQEADLVLLVLNASEPLTDQDKQLLEISRDSNR--------IVLLNKTDL---- 341
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ-IPAGGRRWAVNQRQCEQLM 507
E ++ D + + Q I +E I +I + I + N R +
Sbjct: 342 -EEKIELDQLPADVIKISVLHNQNIDKIEERINQIFFENAGIVEQDATYLSNARHISLIE 400
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ E+L + +E +P+D +D+ LG+I+G+ +E+++ +F +FC+GK
Sbjct: 401 KALESLQAVNQGLEMGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457
>gi|226326138|ref|ZP_03801656.1| hypothetical protein COPCOM_03957 [Coprococcus comes ATCC 27758]
gi|225205680|gb|EEG88034.1| tRNA modification GTPase TrmE [Coprococcus comes ATCC 27758]
Length = 459
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 176/477 (36%), Positives = 271/477 (56%), Gaps = 30/477 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T++ +GIVRLSG A I+ +++K K K S SH + YG
Sbjct: 7 TIAAISTAM--TNSGIGIVRLSGEDAFSIIDKIYKG--KSPKLLS-----EQKSHTIHYG 57
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
++D +DEVL + M P SYT ED VE+ CHG R++L ++ GA A+PGE
Sbjct: 58 YIMDGE-QTIDEVLVLLMRGPHSYTGEDTVEIDCHGGVFVTRKILETVIKYGARPAEPGE 116
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
F+ RAFLNGR+DLSQAE V +IS+K+ A +++ ++G + + +R + I
Sbjct: 117 FSKRAFLNGRMDLSQAEAVIDIISSKNDYALQSSVNQLKGSVHNKIKEIREVILYHTAFI 176
Query: 274 EARLDFDDEMPPLN------LNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
E+ LD D E ++ L +V D + Q ++ L+TA+ ++++ G++ IVG+P
Sbjct: 177 ESALD-DPEHISVDGYGDSLLGVVKD----LQQKIQCLLDTADDGRIIKEGIKTVIVGKP 231
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
N GKSSL+N E+AIVTEIAGTTRDV+E ++ + GV + ++DTAGIR+T DIVEKIG
Sbjct: 232 NAGKSSLMNVLVGEEKAIVTEIAGTTRDVLEENIQLQGVSLNIMDTAGIRDTSDIVEKIG 291
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
V++++ A AD+II V A D E++ I+ K ++++NK D +
Sbjct: 292 VDKAKENAEKADLIIYVVDASRPLDENDHEIIEMIRDKKA--------VILLNKSDLSTV 343
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ + + + A GI +LE+ + ++ I + N R L
Sbjct: 344 VDKKALETLIT-KPMIDISAKEETGIHELESTLKEMFYHGDISFNDEVYITNIRHKTALA 402
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+L +++ SIE ++P DF+TIDL DA +LG I+GE I E++++ IF KFC+GK
Sbjct: 403 DALSSLKKVEESIENQMPEDFFTIDLMDAYESLGSITGETIGEDLVNEIFSKFCMGK 459
>gi|290968160|ref|ZP_06559705.1| tRNA modification GTPase TrmE [Megasphaera genomosp. type_1 str.
28L]
gi|290781835|gb|EFD94418.1| tRNA modification GTPase TrmE [Megasphaera genomosp. type_1 str.
28L]
Length = 459
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 172/483 (35%), Positives = 270/483 (55%), Gaps = 36/483 (7%)
Query: 91 TFSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFK-----PVKKKKKKSSGSGSW 143
T TIAAIVT PPG VGI+R+SG A + +F+ P+ +++ KS
Sbjct: 4 TNETIAAIVT----PPGESGVGIIRISGDQAFSVGDVLFRSVSAVPLAQRRDKS------ 53
Query: 144 RPTSHVVEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLE 203
V+YG + +R+G V+DEVL + M P SYT EDV+E+QCHG ++++L LE
Sbjct: 54 ------VQYGHITERNGAVIDEVLVLIMKGPHSYTAEDVLEIQCHGGIKVIQKILTLVLE 107
Query: 204 AGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVR 263
G LA+PGEFT RAF+NGR+DL+QAE V +I AKS A A+ ++G S +V +
Sbjct: 108 QGVRLARPGEFTERAFVNGRIDLAQAEAVMDIIQAKSEAGVTRAVRQLEGKLSEVVNDML 167
Query: 264 AKCIELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIA 322
+T +E +D+ ++++ + + + + M +E+ L A K+++ G+ +
Sbjct: 168 QNLTTFITRLEVTVDYPEEDLEEIEVPDIAGSLQEMRDALEHMLGRARTGKMIRDGITVV 227
Query: 323 IVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDI 382
I G PN GKSSLLN + ++AIVTE+ GTTRDVIEA +T+ G+P L+DTAGIR+TDD
Sbjct: 228 INGLPNAGKSSLLNRLLEEDKAIVTEVPGTTRDVIEAWITLSGIPFCLVDTAGIRKTDDK 287
Query: 383 VEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKI 442
VE+IGV ++ + AD+I++ + E+ LL I+ +++NK
Sbjct: 288 VERIGVAKARSYMDTADIILLVLDGSHKLQEEEKALLQEIKDKTAW--------VILNKS 339
Query: 443 DCAPSASNEWNKVGNSFNDHVFT-CAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQR 501
D + K ++ V + A TG+GI+ L+ +++ V G N R
Sbjct: 340 DISSLMD---KKEIEAYGIPVLSLSARTGKGIEALQKTLLRYVLSKGWDTGADVLLANVR 396
Query: 502 QCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
E + K A+ R +++ LP+D ID+R+A LG I+G+ + +++ IF +FC
Sbjct: 397 HIEAARQAKAAMDRALHTLQAGLPIDLAIIDIREAWEMLGDITGQHVRADIVKEIFSRFC 456
Query: 562 IGK 564
+GK
Sbjct: 457 LGK 459
>gi|410029487|ref|ZP_11279321.1| tRNA modification GTPase trmE [Marinilabilia sp. AK2]
Length = 460
Score = 281 bits (719), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 165/476 (34%), Positives = 274/476 (57%), Gaps = 31/476 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI A+ T G GA+ ++RLSG A+ I +VFK G + +SH + +G
Sbjct: 11 TIIALATPQG--VGAIAVIRLSGKEAIKITNKVFK----------GKDLEKQSSHTIHFG 58
Query: 154 VVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+ R G+ ++DEVL +AP+S+T+E+VVE+ HGS + +V++ + GA A+PG
Sbjct: 59 TI--RDGDRIIDEVLVSLFIAPKSFTKENVVEISTHGSSYIVNQVIKLLIRHGARPAKPG 116
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFT RAFLNG+ DL+QAE V LI + S + AA+ ++GGFS ++ +RA+ I +
Sbjct: 117 EFTQRAFLNGQFDLAQAEAVADLIHSDSEVSHQAAMNQMRGGFSGEISKLRAELIHFASM 176
Query: 273 IEARLDFDDEMPPL----NLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
IE LDF +E +L ++++K+ + +E + + + ++++G+ I G+PN
Sbjct: 177 IELELDFTEEDVEFASRDDLRVLVEKLLRV---IEQLISSFDLGNVIKNGVPTVIAGKPN 233
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGV 388
GKS+LLNA E+AIV++IAGTTRD IE + + GV +DTAG+RET D +E IGV
Sbjct: 234 AGKSTLLNALLNEEKAIVSDIAGTTRDFIEDEINIGGVIFRFIDTAGLRETTDTIEAIGV 293
Query: 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448
R++ A +I+ D E + +N++++ P + V NKID A S
Sbjct: 294 SRTQEKMKTASLILYLFDLTDTDMLEINRDINKLEN------LGVPFVKVGNKIDKANSQ 347
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
+N++ + D +F A + + L I+++V L + G N R + L++
Sbjct: 348 F--FNELKDKHPDTIFISAGQKENLDVLRNRILELVNLDKFRTGN-TIVTNIRHYDSLVK 404
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
T+++L+ + + ++ + DF +D+R + LG+I+GE ++++L+NIF KFCIGK
Sbjct: 405 TRQSLLDVLTGLDNHITNDFLAMDIRRSLHYLGEITGEITTDDLLANIFSKFCIGK 460
>gi|164686452|ref|ZP_02210480.1| hypothetical protein CLOBAR_00017 [Clostridium bartlettii DSM
16795]
gi|164604463|gb|EDQ97928.1| tRNA modification GTPase TrmE [Clostridium bartlettii DSM 16795]
Length = 462
Score = 281 bits (718), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 173/476 (36%), Positives = 265/476 (55%), Gaps = 27/476 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI T+ G + + S + V +FK V SG S + YG
Sbjct: 9 TIAAIATAPGEGGIGIIRISGSNSLKV--AEEIFKAV-------SGKKISEYNSRTLVYG 59
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ D + DEVL M PRSYT EDV+E+ CHG + ++++L L LA+ GE
Sbjct: 60 NIFDGEKRI-DEVLVAYMEGPRSYTGEDVIEINCHGGFISVKKILELILTKDVRLAEAGE 118
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNGR+DLSQAE V +I +K+ A + A ++G ++ + S+R K E+L ++
Sbjct: 119 FTKRAFLNGRIDLSQAEAVIDVIKSKTDKAQEVAQNQLEGSLANKIKSLRLKVTEVLAQL 178
Query: 274 EARLDFDDE-MPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
E +DF DE + + + +K + ++++ ++A K+L+ GL+ I+G+PNVGKS
Sbjct: 179 EVSIDFSDEDVEDVTYKEIEEKSLELREEIKKLYDSAESGKILRDGLKTVIIGKPNVGKS 238
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLN+ RAIVTEIAGTTRDVIE V + G+P+ ++DTAGIRET+DIVEKIGV++S+
Sbjct: 239 SLLNSILGENRAIVTEIAGTTRDVIEEFVNIKGIPLKIVDTAGIRETEDIVEKIGVQKSK 298
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID----CAPSA 448
AD++I+ + + T ED E+L +S K I+++NKID +A
Sbjct: 299 ESIDSADLVIIVLDSSKSLTDEDLEILESAKSKK--------TIVLLNKIDLDQAIDETA 350
Query: 449 SNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMR 508
E+ VG ++ + A+ +GI+ + I +V + + N R + L +
Sbjct: 351 IEEF--VGK--DNIIKISALKNEGIEQIHDKIESMVFAGDVKSSSNLVITNSRHKDALFK 406
Query: 509 TKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
++ IE+ LP DF +D ++ LG I+G+ + E++L IF FCIGK
Sbjct: 407 AYNSINDAIDGIEQRLPYDFIEVDFKNIWDYLGYINGDTVQEDLLDTIFSNFCIGK 462
>gi|114332120|ref|YP_748342.1| tRNA modification GTPase TrmE [Nitrosomonas eutropha C91]
gi|114309134|gb|ABI60377.1| tRNA modification GTPase trmE [Nitrosomonas eutropha C91]
Length = 459
Score = 281 bits (718), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 180/479 (37%), Positives = 268/479 (55%), Gaps = 41/479 (8%)
Query: 94 TIAAIVTSIGGPPG--AVGIVRLSG----PMAVDIVGRVFKPVKKKKKKSSGSGSWRPTS 147
TIAAI T PPG +GIVR+SG +A I+G++ P + +G ++
Sbjct: 14 TIAAIAT----PPGRGGIGIVRISGTNLEQLAQTILGKLPDP------RHAGLFNF---- 59
Query: 148 HVVEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
LD++ V+D+ + + +P SYT EDV+EL HG + +L CL+ GA
Sbjct: 60 --------LDQNNQVIDQGIVLYFPSPNSYTGEDVLELHGHGGPAVMNLLLTRCLQLGAR 111
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
LA+PGEFTLRAFLN +LDL+QAE V LI A + AA A+ + G FSS + + + I
Sbjct: 112 LAEPGEFTLRAFLNEKLDLAQAEGVADLIEASTANAARCAVRSLHGEFSSAIHQLVSALI 171
Query: 268 ELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L +EA LDF ++E+ L ++++ ++ +E L + LLQ G+++ + G+
Sbjct: 172 DLRVLVEATLDFPEEEIDFLQSAHAVEQLASIQTKLEQVLSASRRGNLLQEGIKVVLTGQ 231
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN + E AIVTEI GTTRD I S+ + G+P+ L+DTAG+RET DIVE+
Sbjct: 232 PNVGKSSLLNRLAGDEIAIVTEIPGTTRDTIRQSIEIEGIPLHLIDTAGLRETSDIVEQH 291
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
G+ R+ A AD++++ V G T ED +L R+ P++ V NKID +
Sbjct: 292 GIARAYAAIEQADLVLLLVDGRYGVTKEDHSVLARL-------PKELPVLTVHNKIDLSG 344
Query: 447 SASN-EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
S E + G + ++ +G+GI+ L T ++K VG AG + QR +
Sbjct: 345 QLSRIEEDTSGTA----IYLSVKSGEGIELLRTVLLKTVGWQTNIAGEGAYMARQRHLQA 400
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L+ KE L R ++ + L+ +LR A AL I+GE S+++L IF FCIGK
Sbjct: 401 LLHAKELLKRAETWLHTADQLEILAEELRLAQQALSSITGEFTSDDLLGEIFSNFCIGK 459
>gi|197302262|ref|ZP_03167321.1| hypothetical protein RUMLAC_00989 [Ruminococcus lactaris ATCC
29176]
gi|197298693|gb|EDY33234.1| tRNA modification GTPase TrmE [Ruminococcus lactaris ATCC 29176]
Length = 477
Score = 281 bits (718), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 173/485 (35%), Positives = 271/485 (55%), Gaps = 26/485 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI S G +GIVRLSG A++I +V++ +K SH + YG
Sbjct: 5 TIAAI--STGMTNSGIGIVRLSGNEALEIADKVYRGKEK---------ITEVPSHTIHYG 53
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
+ D VDEVL + M PR++T ED VE+ CHG + RVL L+ GA A+PGE
Sbjct: 54 HIADGE-ETVDEVLMMVMHGPRTFTGEDTVEINCHGGTYVVSRVLETVLKYGARAAEPGE 112
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNG++DLSQAE V LI++++ A ++++ ++G S + +R+K + I
Sbjct: 113 FTKRAFLNGKMDLSQAEAVIDLINSENEYALQSSVSQLKGSVKSAINELRSKILYHTAFI 172
Query: 274 EARLDFDDEMPPLNLNLVMDKI-HAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
E LD + + ++ + + + ++ +++A+ ++++ G+Q IVG+PN GKS
Sbjct: 173 ETALDDPEHISVDGYGEILKGVSEEIIEKLQKLIDSADDGRIMKEGIQTVIVGKPNAGKS 232
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLN + ERAIVT+IAGTTRDV+E + + G+ + ++DTAGIR+T+D+VEK+GV++++
Sbjct: 233 SLLNLLAGHERAIVTDIAGTTRDVLEEQIRLQGLNLNVIDTAGIRQTEDLVEKMGVDKAK 292
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQS-------NKKSTESSTPMILVINKI--- 442
A AD+II V A D +++ I NK E+ L+ KI
Sbjct: 293 EYAQKADLIIYVVDASKKLDENDEKIMELIYDKKAIILLNKSDLETVVDENLIREKISNL 352
Query: 443 --DCAPSASNEWNKVGNSFNDHVFT-CAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVN 499
+ + +E + S N V A QGIQ + + ++ I + N
Sbjct: 353 KKEAEQTEKSEGQRYQVSENIPVIQISAKEEQGIQTFQDTLKEMFLRGNISFNEEIYITN 412
Query: 500 QRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGK 559
RQ L+ E++ ++ SIE +P DF++IDL DA LG I+GE + E++++ IF K
Sbjct: 413 ARQKNALVNALESMKKVIESIENGMPEDFYSIDLMDAYEELGNITGESMGEDLVNEIFSK 472
Query: 560 FCIGK 564
FC+GK
Sbjct: 473 FCMGK 477
>gi|205422392|sp|Q0AE55.2|MNME_NITEC RecName: Full=tRNA modification GTPase MnmE
Length = 451
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 180/479 (37%), Positives = 268/479 (55%), Gaps = 41/479 (8%)
Query: 94 TIAAIVTSIGGPPG--AVGIVRLSG----PMAVDIVGRVFKPVKKKKKKSSGSGSWRPTS 147
TIAAI T PPG +GIVR+SG +A I+G++ P + +G ++
Sbjct: 6 TIAAIAT----PPGRGGIGIVRISGTNLEQLAQTILGKLPDP------RHAGLFNF---- 51
Query: 148 HVVEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
LD++ V+D+ + + +P SYT EDV+EL HG + +L CL+ GA
Sbjct: 52 --------LDQNNQVIDQGIVLYFPSPNSYTGEDVLELHGHGGPAVMNLLLTRCLQLGAR 103
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
LA+PGEFTLRAFLN +LDL+QAE V LI A + AA A+ + G FSS + + + I
Sbjct: 104 LAEPGEFTLRAFLNEKLDLAQAEGVADLIEASTANAARCAVRSLHGEFSSAIHQLVSALI 163
Query: 268 ELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
+L +EA LDF ++E+ L ++++ ++ +E L + LLQ G+++ + G+
Sbjct: 164 DLRVLVEATLDFPEEEIDFLQSAHAVEQLASIQTKLEQVLSASRRGNLLQEGIKVVLTGQ 223
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN + E AIVTEI GTTRD I S+ + G+P+ L+DTAG+RET DIVE+
Sbjct: 224 PNVGKSSLLNRLAGDEIAIVTEIPGTTRDTIRQSIEIEGIPLHLIDTAGLRETSDIVEQH 283
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
G+ R+ A AD++++ V G T ED +L R+ P++ V NKID +
Sbjct: 284 GIARAYAAIEQADLVLLLVDGRYGVTKEDHSVLARL-------PKELPVLTVHNKIDLSG 336
Query: 447 SASN-EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
S E + G + ++ +G+GI+ L T ++K VG AG + QR +
Sbjct: 337 QLSRIEEDTSGTA----IYLSVKSGEGIELLRTVLLKTVGWQTNIAGEGAYMARQRHLQA 392
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L+ KE L R ++ + L+ +LR A AL I+GE S+++L IF FCIGK
Sbjct: 393 LLHAKELLKRAETWLHTADQLEILAEELRLAQQALSSITGEFTSDDLLGEIFSNFCIGK 451
>gi|317051763|ref|YP_004112879.1| tRNA modification GTPase TrmE [Desulfurispirillum indicum S5]
gi|316946847|gb|ADU66323.1| tRNA modification GTPase TrmE [Desulfurispirillum indicum S5]
Length = 458
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 174/478 (36%), Positives = 267/478 (55%), Gaps = 32/478 (6%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFK-----PVKKKKKKSSGSGSWRPTSH 148
TI A+ T+ G GAVGIVR+SGP A + + F+ PV++ K +
Sbjct: 6 TITAVATAPG--EGAVGIVRVSGPAAPTLFQQFFRSRNLQPVQQPKPRH----------- 52
Query: 149 VVEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+ +G+ LD G+ +D+VLAV M P S+T EDVVE CHG + R+L C L
Sbjct: 53 -LYFGLFLDEGGHPLDQVLAVHMPGPHSFTGEDVVEFHCHGGSTIISRILELC-STRCRL 110
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
AQPGEF+ RAFLNG+LDL+QAE + +I +K+ AA A +QG + +R + I
Sbjct: 111 AQPGEFSRRAFLNGKLDLTQAEAIIDVIRSKTPEAARIASDVMQGRLRDTLQELRGELIA 170
Query: 269 LLTEIEARLDFDDE-MPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRP 327
+ +EA ++F DE + P + + ++ + Q +E L + L++ G +AIVG+P
Sbjct: 171 IQGNLEATMEFSDEDIAPASTTALAQRLTGVRQQLETLLAHSRTGMLMRDGAAVAIVGKP 230
Query: 328 NVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG 387
NVGKSSLLNA S+SER+IVT I GTTRD++E ++V G+P+ LLDTAGIR++ D VE+IG
Sbjct: 231 NVGKSSLLNALSRSERSIVTAIPGTTRDIVEQYISVHGLPIRLLDTAGIRQSQDAVEQIG 290
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
+ER+ + AD+I+ + ED E+ +Q P ++++NK D P
Sbjct: 291 IERTRSAIQQADIILWLLDTSRPADEEDHEIARLVQGK--------PCLVLLNKSDL-PR 341
Query: 448 ASNEWNKVGNSFNDHVFTCAVTGQGIQDL-ETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
A +E + + T TG G++ L +T K+ G H + RQ E +
Sbjct: 342 AMDESILHAMDHDTILTTSLQTGDGLEKLMDTLFRKLSGAHH-ESHSNPLLSRARQRESM 400
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
E+L + ++ L + ++D++ A LG+I GE +++++L IF +FCIGK
Sbjct: 401 ANALESLGHAQDTLIRGLGYELVSMDIQHAFSYLGEILGEVVTDDILDTIFSEFCIGK 458
>gi|162448238|ref|YP_001621370.1| tRNA modification GTPase TrmE [Acholeplasma laidlawii PG-8A]
gi|189036193|sp|A9NE34.1|MNME_ACHLI RecName: Full=tRNA modification GTPase MnmE
gi|161986345|gb|ABX81994.1| tRNA modification GTPase [Acholeplasma laidlawii PG-8A]
Length = 448
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 162/475 (34%), Positives = 265/475 (55%), Gaps = 31/475 (6%)
Query: 92 FSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
F TIAAI T +G + ++R+SG A+ V ++FK G + SH +
Sbjct: 3 FQTIAAIATPLG--TAGISVIRVSGDEAISKVNQIFK----------GKNLNKVKSHTIH 50
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG +L+ G+++DEV+ +AP+S+T+EDVVE+ HG + ++VL LE G LAQP
Sbjct: 51 YGHILNEDGSILDEVMISVFIAPKSFTKEDVVEISTHGGILITQKVLERILETGIELAQP 110
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEF+ RAFLNGR+DL QAE + +I A + A A + SS++ ++++K + L+
Sbjct: 111 GEFSKRAFLNGRIDLVQAEAIMDIIHATNENAIKVANKALNKATSSMIDNLKSKVLTLIA 170
Query: 272 EIEARLDF--DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329
+IE +D+ D+ ++ L+ +++ + ++ + L + + ++ G++ IVGRPNV
Sbjct: 171 QIEVNIDYPEYDDAIIMSKELIYPRVNDLLDEINDILTKSKRTQYIREGVKTVIVGRPNV 230
Query: 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVE 389
GKSSLLNA ERAIV++IAGTTRD I+A V + GV + L+DTAGIR+ D +EKIGV+
Sbjct: 231 GKSSLLNALLNEERAIVSDIAGTTRDTIDAFVNLDGVTLQLIDTAGIRDALDTIEKIGVD 290
Query: 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449
RS A+++++ + T ED LL + + I++ NK D
Sbjct: 291 RSRKAIHEAELVLLVLDLSQKLTKEDEMLLTLTEHKNR--------IIIGNKKDLPSYLE 342
Query: 450 NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+ N V + +G+ LE+ I+K + L + + N R ++L
Sbjct: 343 IDTN---------VQISTLEKEGLSVLESEILKTLKLDNLVDKDFNYLSNVRHIQKLKEA 393
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K +L + ++I ++P+D + +DL A LG+I G ++L+ +F KFC+GK
Sbjct: 394 KTSLESVINAIHHDMPVDIYAVDLTTAWNRLGEILGNHQYGDLLTELFSKFCLGK 448
>gi|149370691|ref|ZP_01890380.1| tRNA modification GTPase TrmE [unidentified eubacterium SCB49]
gi|149356242|gb|EDM44799.1| tRNA modification GTPase TrmE [unidentified eubacterium SCB49]
Length = 465
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 172/485 (35%), Positives = 270/485 (55%), Gaps = 38/485 (7%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TI A+ T G GA+ ++RLSG A+ I +F V KK +H V G
Sbjct: 5 TIVALATPAGA--GAIAVIRLSGSDAIAIATAMFNAVSGKKLN-------HQATHTVHLG 55
Query: 154 VVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPG 212
+ + G VVDEVLA P+SYT EDVVE CHGS + +++ CL+ GA +A PG
Sbjct: 56 HI--KEGTRVVDEVLATIFKNPKSYTGEDVVEFSCHGSNYIQQEIIQLCLKKGARMANPG 113
Query: 213 EFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTE 272
EFTLRAF+NG++DLSQAE V LI++ S A+ A+ ++GGFSS + +R + + +
Sbjct: 114 EFTLRAFINGKMDLSQAEAVADLIASDSQASHQLAIQQMRGGFSSEIKKLREELLNFASL 173
Query: 273 IEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGK 331
IE LDF ++++ N + I ++Q ++ +++ +L++G+ +AIVG PNVGK
Sbjct: 174 IELELDFAEEDVAFANRDEFQKLITRITQVLKRLIDSFATGNVLKNGIPVAIVGEPNVGK 233
Query: 332 SSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391
S+LLNA ERAIV++IAGTTRD IE + + G+ +DTAGIR+T D +E +G++++
Sbjct: 234 STLLNALLNEERAIVSDIAGTTRDTIEDELNIGGIAFRFIDTAGIRDTSDTIEGLGIKKT 293
Query: 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNK-KSTESSTPMILVINKIDCAPSASN 450
A V++ ++A + + +I+ K K+ +++V+NKID
Sbjct: 294 FEKMEQAQVVLFLIAATQLLQDKTA---TQIEIEKIKNKHPQKTLVMVVNKIDQI----- 345
Query: 451 EWNKVGNSFNDH-------VFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRR----WAVN 499
+ ++ N H + A TG+G++ L+T ++ V G R N
Sbjct: 346 QTKQISEVKNIHLPQKTVLIPISAKTGEGVETLKTTLLDFVN-----TGALRNNDTIVTN 400
Query: 500 QRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGK 559
R + L++ E +VR++ I+ L D ID+R A G+I+G+ ++E+L NIF
Sbjct: 401 SRHYDALLKALEEIVRVQEGIDNNLSSDLMAIDIRQALYHFGEITGQVTNDELLGNIFAN 460
Query: 560 FCIGK 564
FCIGK
Sbjct: 461 FCIGK 465
>gi|429220312|ref|YP_007181956.1| tRNA modification GTPase TrmE [Deinococcus peraridilitoris DSM
19664]
gi|429131175|gb|AFZ68190.1| tRNA modification GTPase TrmE [Deinococcus peraridilitoris DSM
19664]
Length = 439
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 187/481 (38%), Positives = 266/481 (55%), Gaps = 49/481 (10%)
Query: 88 KAGTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTS 147
+ G T+AAI T+ GG GA+GIVRLSG A+DI +F V ++ + G +
Sbjct: 4 RLGLADTVAAISTAPGG--GAIGIVRLSGTRALDIASGLF--VGQRAPSAVPGGRFL--- 56
Query: 148 HVVEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
+G D G +DE L + P SYT EDV ELQCHGS L R+L LE GA
Sbjct: 57 ----FGRFTDGAGGTIDEGLVLVFRGPHSYTGEDVAELQCHGSPAVLNRLLARVLELGAR 112
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
A PGEFTLRA+LNGRLDL+QAE V L++A+S A A G+QG V + +
Sbjct: 113 AANPGEFTLRAYLNGRLDLAQAEAVLGLVNARSETARRQATLGLQGALGERVGEIGQRLT 172
Query: 268 ELLTEIEARLDFDDE-MPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
L I+A LD+ +E +P + + + + D+E+ + TA +L G ++A++GR
Sbjct: 173 RALVAIQALLDYPEEGVPEEDREIPLARAQG---DLEDLVATARAGQLASRGARLALIGR 229
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PN GKSSLLNA ER+IVT AGTTRD +EA + + GVP+TL+DTAG+RET+D++E
Sbjct: 230 PNAGKSSLLNALLGYERSIVTPQAGTTRDYLEAQLELAGVPITLVDTAGLRETEDLIEAA 289
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTP---MILVINKID 443
GV R+E +A GAD++++ ED S ++ +TP + + K D
Sbjct: 290 GVRRAEELAQGADLVLVL---------EDG------SSARELLPITTPPERCLWLQTKSD 334
Query: 444 CAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQC 503
P +E ++ AVTGQG+ +L A+ L AG W ++RQ
Sbjct: 335 LPPCWHDEA---------YLPVSAVTGQGLGELREAVR--AHLLGNAAGAEVWLTSERQA 383
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
+ +R AL ++S+ LP D + +L A AL +ISG D+SE++L IF FC+G
Sbjct: 384 DAALR---ALEHVRSA--RVLPDDLASYELELALRALAEISGRDVSEDILDGIFANFCVG 438
Query: 564 K 564
K
Sbjct: 439 K 439
>gi|392966701|ref|ZP_10332120.1| tRNA modification GTPase TrmE [Fibrisoma limi BUZ 3]
gi|387845765|emb|CCH54166.1| tRNA modification GTPase TrmE [Fibrisoma limi BUZ 3]
Length = 459
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 169/475 (35%), Positives = 268/475 (56%), Gaps = 29/475 (6%)
Query: 95 IAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGV 154
IAA+ T+ G GA+ ++R+SG A+++ R+FK G + SH +G+
Sbjct: 9 IAALATAPG--IGAIAVIRVSGEGAIEVTNRLFK----------GKDLTQQPSHTAHFGL 56
Query: 155 VLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEF 214
+ + G+++DEVLA AP+S+T+EDVVE+ CHGSE +R++L ++ G LA+PGEF
Sbjct: 57 LRNPDGSIIDEVLATVFRAPKSFTKEDVVEISCHGSEFIIRQILNRLMQEGVRLARPGEF 116
Query: 215 TLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIE 274
T RAFLNG+ DL QAE V LI+A S A+ AAL ++GGFS + ++R + I+ + +E
Sbjct: 117 TQRAFLNGQFDLVQAEAVADLIAADSEASHRAALTQLRGGFSKQLKALRQQLIDFVALVE 176
Query: 275 ARLDFDDEMPPLNLNLVMDKIHAMSQDVENAL----ETANYDKLLQSGLQIAIVGRPNVG 330
LDF +E D++ + QD+ L ++ +++G+ IVG+PN G
Sbjct: 177 LELDFGEEDVEFAKR---DQLRGLMQDIRRVLRPLIDSFTTGNAIKNGVPTVIVGKPNAG 233
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KS+LLNA E+AIV++I GTTRDVIE + + G+ L+DTAG+R+T D +E IGVER
Sbjct: 234 KSTLLNALLNEEKAIVSDIPGTTRDVIEDELFIDGIRFRLIDTAGLRQTTDTIEAIGVER 293
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
++ A +++ V+ E + + ++++ K P +LV NK D P A
Sbjct: 294 TQQKMRDASLVVYLFDGVNVTPDELQDAILEVRASGK------PYLLVGNKADATPDAKR 347
Query: 451 E-WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRT 509
+ N+V + V + I +L+ A+ V G N R E L+ T
Sbjct: 348 QTLNEV---VGEPVVWISAKDAQIDELKAALSARVRTDATVQTGSAVVTNARHLEHLVGT 404
Query: 510 KEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+AL S ++ + D+ +DLR A LG+++GE ++++L +IF +FCIGK
Sbjct: 405 DDALAHAISGLDAGISADWLAMDLRLALKHLGELTGEITTDDLLDSIFSRFCIGK 459
>gi|222099393|ref|YP_002533961.1| tRNA modification GTPase TrmE [Thermotoga neapolitana DSM 4359]
gi|221571783|gb|ACM22595.1| tRNA modification GTPase trmE [Thermotoga neapolitana DSM 4359]
Length = 455
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 171/478 (35%), Positives = 265/478 (55%), Gaps = 31/478 (6%)
Query: 91 TFSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSH 148
+ TI A+ T PPG A+ I+RLSGP + DIV + FK + + G R
Sbjct: 5 SMDTIVAVAT----PPGKGAIAILRLSGPESWDIVRKHFKTRSNIVPRKAIHGWIRE--- 57
Query: 149 VVEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATL 208
+G +DEV+ + +PRSYT ED+VE+ CHG ++++L L AGA +
Sbjct: 58 ----------NGEDIDEVVVIFYRSPRSYTGEDMVEVMCHGGPFVVKKLLDVFLSAGARM 107
Query: 209 AQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIE 268
A+PGEFT RAFLNG++DL+ AE V LI AKS A+ +L ++GG V ++R + I
Sbjct: 108 AEPGEFTKRAFLNGKMDLTSAEAVRDLIEAKSEASLKLSLKNLKGGLRQFVETLREELIN 167
Query: 269 LLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328
+L EI LD+ D++ ++ V KI ++ + ++ L+ A+ +L GL++ IVG+PN
Sbjct: 168 VLAEIRVELDYPDDVET-DVESVKTKIESIHERLKEELKKADAGIMLNRGLRMVIVGKPN 226
Query: 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIR-ETDDIVEKIG 387
VGKS+LLN K +RAIVT+I GTTRDVI + + G+ ++DTAG+R ET D+VE++G
Sbjct: 227 VGKSTLLNRLLKEDRAIVTDIPGTTRDVISEEIVIKGILFRVVDTAGVRSETRDLVERLG 286
Query: 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447
+ER+ AD+++ + A ED +L RI+ + ++VINK+D
Sbjct: 287 IERTFQEIEKADIVLFVLDASSPLDDEDRLILERIKHKR--------YLVVINKVDIVER 338
Query: 448 ASNEWNKVGNSFNDHVFTC-AVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
E K + H+ A+ G+G++ LE A+ + G N RQ + L
Sbjct: 339 IDEEELKRKLGTDRHIVKISALKGEGLEKLEEAVYRETQ-EIFEKGSSSLITNLRQKQLL 397
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
K++L S++ + P+D +IDL A L +++G E++L IF FC+GK
Sbjct: 398 ENVKKSLESAIESLKNKTPIDLVSIDLERALHVLDEVTGRSFREDLLDAIFSTFCVGK 455
>gi|46445656|ref|YP_007021.1| tRNA modification GTPase TrmE [Candidatus Protochlamydia
amoebophila UWE25]
gi|81829092|sp|Q6MFA3.1|MNME_PARUW RecName: Full=tRNA modification GTPase MnmE
gi|46399297|emb|CAF22746.1| probable GTP-binding protein in thiophene and furan oxidation
[Candidatus Protochlamydia amoebophila UWE25]
Length = 458
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 175/474 (36%), Positives = 269/474 (56%), Gaps = 31/474 (6%)
Query: 94 TIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVE 151
TIAAI T PPG V I+R+SG ++++ ++F S S+R SH
Sbjct: 13 TIAAIAT----PPGEGGVAIIRISGDQSLEVAAKIF---------SGPIFSYR--SHTAH 57
Query: 152 YGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQP 211
YG + + G VD+VL + ML RSYT E+ VE+ CHG + R+VL L AGA A P
Sbjct: 58 YGQIYNSSGEHVDDVLVLIMLGKRSYTGENTVEIHCHGGSLITRKVLEVVLAAGARAALP 117
Query: 212 GEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLT 271
GEFT +A++NG++DL+QAE V++LI AK+ A AA + ++G S+ V + ++ ++
Sbjct: 118 GEFTFKAYMNGKIDLAQAEAVQELICAKNEKALGAAESQLKGSLSNRVLAFQSTLTQIAA 177
Query: 272 EIEARLDFDDE-MPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
+EA +DF +E + ++ + + ++D+E + + + K+L GL I ++G PNVG
Sbjct: 178 ILEAWVDFPEEGLEFATMDELDQDLERTAKDMEKLVNSFHNGKILHDGLSICLIGCPNVG 237
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSL+NA +RAIV+ I GTTRDV+E + + G+ + L DTAGIRE ++ VE+ G+ R
Sbjct: 238 KSSLMNALLDKDRAIVSPIPGTTRDVLEDHLRLNGLHIKLSDTAGIREANESVEQEGIRR 297
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S+ AD+I++ + A G ED ELL ++ +K I++ NKID P
Sbjct: 298 SKKAMQEADLILLVLDAHKGLEKEDQELLKQVPFHK--------TIVIWNKIDLNPR--- 346
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
N V A G+++L I I+ P+ N R E L+ +
Sbjct: 347 --NLPCLEVPFLVHLSAKEKIGLEELHQTIDTIIWQDGPPSKEEILITNVRHKEALIESI 404
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
E+L R+K + ++ +F T+D+R + L LG+I G +ISE++LS IF KFCIGK
Sbjct: 405 ESLRRVKIGLRHQVSPEFLTLDMRQSLLELGKIIGTNISEDILSAIFSKFCIGK 458
>gi|114568076|ref|YP_755230.1| GTPase [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
gi|122317083|sp|Q0ATU5.1|MNME_SYNWW RecName: Full=tRNA modification GTPase MnmE
gi|114339011|gb|ABI69859.1| tRNA modification GTPase trmE [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 459
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 187/483 (38%), Positives = 267/483 (55%), Gaps = 42/483 (8%)
Query: 95 IAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGV 154
IAAI T+ G G + IVRLSG ++ V R+FKP + K S G + + G
Sbjct: 6 IAAISTAPG--EGGIAIVRLSGNDVIEKVERIFKPYRAGIKLSDKEG------YSLSLGW 57
Query: 155 VLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEF 214
+ D ++DEVL M APRSYT EDVVE+ CHG + RR L A + G LAQPGEF
Sbjct: 58 LCDEKMEIIDEVLLGLMRAPRSYTGEDVVEINCHGGTLPARRCLEAVMWQGVRLAQPGEF 117
Query: 215 TLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIE 274
T RAFLNGRLD+SQAE V ++I AK+ + AL + G S + + + IE+ +E
Sbjct: 118 TRRAFLNGRLDVSQAEAVIEVIRAKTERGMNLALKQLAGRNSQEINLLEDQMIEVNAMLE 177
Query: 275 ARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSL 334
A LDF DE+ L+ + K+ + ++ L ++ + G+ +AI G+PNVGKSSL
Sbjct: 178 ASLDFPDEVGDLDYSAAQGKLQEVKNRIDKLLLAGERAEIYREGINVAICGKPNVGKSSL 237
Query: 335 LNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAV 394
LNA + E+AIVT I GTTRD+IE + + G+PV L DTAGIR T+D+VE+IG+ERS+ V
Sbjct: 238 LNALLRKEKAIVTSIPGTTRDIIEDYINIRGIPVKLKDTAGIRSTEDLVERIGIERSQEV 297
Query: 395 ALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNK 454
AD+++ + G ED ++ +I+ K I+++NK D E
Sbjct: 298 ISEADLVLFILDVGTGIDQEDRKIYEKIEKKNK--------IVLVNKEDL------EEKN 343
Query: 455 VGNSFNDHVFTCAVTGQG-------IQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLM 507
+ + + +F +G +++LE +I K V Q+ + +N RQ
Sbjct: 344 ISEAELEQLFPGVKIVRGSIIEETGLEELEESIEKAVLSGQLQSDDMEVMINLRQ----- 398
Query: 508 RTKEALVRLKSSIEEELP------LDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561
K AL+ K IEE L LD +D+ A ALG+ISG+++ EEV+ IF FC
Sbjct: 399 --KNALLTAKRHIEESLAAMGKVSLDCLGVDIWGALEALGEISGKNLKEEVIERIFHDFC 456
Query: 562 IGK 564
IGK
Sbjct: 457 IGK 459
>gi|188587519|ref|YP_001919064.1| tRNA modification GTPase TrmE [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|205415781|sp|B2A470.1|MNME_NATTJ RecName: Full=tRNA modification GTPase MnmE
gi|179352206|gb|ACB86476.1| tRNA modification GTPase TrmE [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 458
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 175/479 (36%), Positives = 274/479 (57%), Gaps = 27/479 (5%)
Query: 91 TFSTIAAIVTSIGGPPGAVGI--VRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSH 148
T TIAA+ T PPG GI +R+SGP + + V ++F+ ++ G+ + + H
Sbjct: 2 TEDTIAALST----PPGEGGIAVIRVSGPDSQNKVKQIFRS-----SRTDGNFNNKKMYH 52
Query: 149 VVEYGVVLDRHGN-VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGAT 207
G ++ N ++DEVL V M P +YT EDVVE+ CHG V ++ +L+ G
Sbjct: 53 ----GQIVSPETNRILDEVLVVFMNKPYTYTCEDVVEIHCHGGMVPVKEILQLLFSYGIR 108
Query: 208 LAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCI 267
A+PGEFT RAFLNGRLDL+QAE V LI++K+ + A+ +QG + +R +
Sbjct: 109 PAEPGEFTKRAFLNGRLDLTQAEGVMDLITSKTNNLKNVAINQLQGNLKQKIDRLRDDLV 168
Query: 268 ELLTEIEARLDF-DDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
++ +EAR+DF D+++ + + + +I D+ N + + + K+++ G++ IVGR
Sbjct: 169 SVMANLEARIDFPDEDIDVEDYHELKHRIDNAKVDINNLIASYDKGKIIREGIKTVIVGR 228
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386
PNVGKSSLLN ERAIVTEI GTTRDV+E + + G+P+ ++DTAGIRE++D VE+I
Sbjct: 229 PNVGKSSLLNLLLGEERAIVTEIPGTTRDVLEEVINLKGIPLRIIDTAGIRESEDKVEQI 288
Query: 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446
GV+R+ AD+I++ + + + ED ++L Q +K S +LV+NK D
Sbjct: 289 GVKRTRDSMEQADIILVVIDSSQELSQEDKQILTMAQ-DKTS-------LLVLNKTDLHE 340
Query: 447 SAS-NEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQ 505
+E +K+ + V A+ +G+ LE I ++V Q+ R
Sbjct: 341 KLDIDEIDKLVSQI-PKVRISALKEEGLDKLEEHISELVFGGQVMQTEELVITKARHFHS 399
Query: 506 LMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
L + KEAL + +I+ E+ D ID+++A LG+I+GE SEE++ IF FCIGK
Sbjct: 400 LDKVKEALSSAEENIKAEMSEDLIAIDIKEAYDYLGEITGETASEELVDRIFNDFCIGK 458
>gi|291548774|emb|CBL25036.1| tRNA modification GTPase trmE [Ruminococcus torques L2-14]
Length = 462
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 168/478 (35%), Positives = 272/478 (56%), Gaps = 27/478 (5%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYG 153
TIAAI S G +GIVR+SG A++I RV+K + + PT H + YG
Sbjct: 5 TIAAI--STGMTNSGIGIVRISGSEALEIADRVYK--------GKETITEVPT-HTIHYG 53
Query: 154 VVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGE 213
V+D VDEVL + M PR++T ED VE+ CHG + RVL L+AGA A+PGE
Sbjct: 54 HVMDGD-ETVDEVLVMVMRGPRTFTGEDTVEINCHGGTYVVSRVLETVLKAGARPAEPGE 112
Query: 214 FTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEI 273
FT RAFLNG++DLSQAE V +I++++ A ++++ ++G + + +R K I I
Sbjct: 113 FTKRAFLNGKMDLSQAEAVIDVITSENEYALQSSISQLKGSVKNRIKEIREKIIYHTAFI 172
Query: 274 EARLDFDDEMPPLNLNLVM-DKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
E LD + + V+ + + ++ +++++ ++++ G+Q I+G+PN GKS
Sbjct: 173 ETALDDPEHISVDGYGEVLKEAAEEVIDQLKELIDSSDDGRIMKEGIQTVILGKPNAGKS 232
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
SLLN + +RAIVT+I GTTRDV+E + + G+ + ++DTAGIR+TDDIVEK+GV++++
Sbjct: 233 SLLNILAGHDRAIVTDIEGTTRDVLEEQIRLQGLTLNIIDTAGIRQTDDIVEKMGVDKAK 292
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
A AD+II V A D ++ + I + ++++NK D + E
Sbjct: 293 EYAKEADLIIYVVDASRNLDENDEKIFDLIYDKR--------TVILLNKSDLDTVVTEEM 344
Query: 453 NK---VGNSFNDHVFTCAVTG---QGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQL 506
+ + A++ QGI++LE + + + + N RQ L
Sbjct: 345 IRERISQKGVQKQIPVIAISAKEEQGIKELENTVKAMFLKGDLSFNEEVYITNARQKNAL 404
Query: 507 MRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+ +E++ ++ SI+ +P DF++IDL DA +LG I+GE I E++++ IF KFC+GK
Sbjct: 405 VNARESMKKVIFSIDAGMPEDFYSIDLMDAYESLGNITGESIGEDLVNEIFSKFCMGK 462
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,582,874,516
Number of Sequences: 23463169
Number of extensions: 356766741
Number of successful extensions: 1546450
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 12026
Number of HSP's successfully gapped in prelim test: 7693
Number of HSP's that attempted gapping in prelim test: 1507990
Number of HSP's gapped (non-prelim): 25225
length of query: 564
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 416
effective length of database: 8,886,646,355
effective search space: 3696844883680
effective search space used: 3696844883680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 80 (35.4 bits)