BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008468
(564 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 423 bits (1087), Expect = e-118, Method: Compositional matrix adjust.
Identities = 222/474 (46%), Positives = 309/474 (65%), Gaps = 23/474 (4%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVXXXXXXXXXXXXWRPTSHVVEYG 153
TIAAI T+I G+VGIVR+SG A+ I +F W SH + YG
Sbjct: 9 TIAAIATAIVPQQGSVGIVRVSGSQAIAIAQTLFD--------APGKQVWE--SHRILYG 58
Query: 154 VVLDRHGN---VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
+ RH +VDE L + M APRSYTREDVVE CHG + +++VL+ CLE+GA LAQ
Sbjct: 59 YI--RHPQTRQIVDEALLLLMKAPRSYTREDVVEFHCHGGIIAVQQVLQLCLESGARLAQ 116
Query: 211 PGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELL 270
PGEFTLRAFLNGRLDL+QAE++ L+ G+QG + + +RA C+++L
Sbjct: 117 PGEFTLRAFLNGRLDLTQAESIADLVGARSPQAAQTALAGLQGKLAHPIRQLRANCLDIL 176
Query: 271 TEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVG 330
EIEAR+DF++++PPL+ ++ I ++ ++ L T + +LL++GL++AIVGRPNVG
Sbjct: 177 AEIEARIDFEEDLPPLDDEAIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVG 236
Query: 331 KSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390
KSSLLNAWS+S+RAIVT++ GTTRDV+E+ + V G+PV +LDTAGIRET D VEKIGVER
Sbjct: 237 KSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVER 296
Query: 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450
S A AD++++T+ A GWT+ D E+ +++ P+ILV+NKID
Sbjct: 297 SRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHR--------PLILVMNKIDLVEKQLI 348
Query: 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510
+ + V T A QGI LETAI++IV ++ A A+NQRQ L + K
Sbjct: 349 TSLEYPENITQIVHTAAAQKQGIDSLETAILEIVQTGKVQAADMDLAINQRQAAALTQAK 408
Query: 511 EALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+L +++++I ++LPLDFWTIDLR A ALG+I+GE+++E VL IF +FCIGK
Sbjct: 409 MSLEQVQATITQQLPLDFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 462
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 254 bits (648), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 169/481 (35%), Positives = 261/481 (54%), Gaps = 39/481 (8%)
Query: 92 FSTIAAIVTSIGGPPG--AVGIVRLSGPMAVDIVGRVFKPVXXXXXXXXXXXXWRPTSHV 149
TI A+ T PPG A+ I+RLSGP + IV + R S +
Sbjct: 33 MDTIVAVAT----PPGKGAIAILRLSGPDSWKIVQK----------------HLRTRSKI 72
Query: 150 VEYGVV---LDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGA 206
V + + +G VDEV+ V +P+SYT ED+VE+ CHG + ++++L L++GA
Sbjct: 73 VPRKAIHGWIHENGEDVDEVVVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKSGA 132
Query: 207 TLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKC 266
+A+PGEFT RAFLNG++DL+ AE V LI ++GG V S+R +
Sbjct: 133 RMAEPGEFTKRAFLNGKMDLTSAEAVRDLIEAKSETSLKLSLRNLKGGLRDFVDSLRREL 192
Query: 267 IELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGR 326
IE+L EI LD+ DE+ N V+ ++ + + + L+ A+ LL GL++ IVG+
Sbjct: 193 IEVLAEIRVELDYPDEIET-NTGEVVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGK 251
Query: 327 PNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIR-ETDDIVEK 385
PNVGKS+LLN +RAIVT+I GTTRDVI + + G+ ++DTAG+R ET+D+VE+
Sbjct: 252 PNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVER 311
Query: 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445
+G+ER+ AD+++ + A ED ++L RI++ + ++VINK+D
Sbjct: 312 LGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKR--------YLVVINKVDVV 363
Query: 446 PSASNE--WNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQC 503
+ E NK+G + V A+ G+G++ LE +I + G N RQ
Sbjct: 364 EKINEEEIKNKLGTDRH-MVKISALKGEGLEKLEESIYRETQ-EIFERGSDSLITNLRQK 421
Query: 504 EQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIG 563
+ L K L S++E +P+D +IDL A L +++G E++L IF FC+G
Sbjct: 422 QLLENVKGHLEDAIKSLKEGMPVDMASIDLERALNLLDEVTGRSFREDLLDTIFSNFCVG 481
Query: 564 K 564
K
Sbjct: 482 K 482
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 221 bits (563), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 160/477 (33%), Positives = 233/477 (48%), Gaps = 25/477 (5%)
Query: 95 IAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVXXXXXXXXXXXXWRPTSHVVEYGV 154
IAAI T +G GA+ IVR+SG +D+ RVF+ V + +G
Sbjct: 18 IAAIATPVG--VGALAIVRISGAGVLDLADRVFRKVHGSGKLA------EAAGYTAHFGR 69
Query: 155 VLDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEF 214
+ D +VDEV+A+ APRS+T E +VE CHG V + RVLR L+ G LA+PGEF
Sbjct: 70 LYDGE-EMVDEVIALVFRAPRSFTAEQMVEFTCHGGPVVVGRVLRLMLDNGCRLAEPGEF 128
Query: 215 TLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIE 274
T RAFLNGR+DL QAE + ++I ++G S + +R + I IE
Sbjct: 129 TRRAFLNGRIDLLQAEAIGEMIHARTESAYRTAVSQMKGDLSVRLGGLREQLIRSCALIE 188
Query: 275 ARLDFDDEMPPLNL--NLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKS 332
LDF +E L M +I + +V +++ + +++ G+ I G+PN GKS
Sbjct: 189 LELDFSEEDVEFQSRDELTM-QIETLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKS 247
Query: 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392
+LLN ERAIV+ + GTTRD IE L DTAG+RE + +E G+ RS
Sbjct: 248 TLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSR 307
Query: 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452
AD+I+ +D T + L I+ K+ + + V NK+D A +A
Sbjct: 308 MKMAEADLILYL---LDLGTERLDDELTEIR-ELKAAHPAAKFLTVANKLDRAANADALI 363
Query: 453 NKVGNSFNDHVF-TCAVTGQGIQDLETAIMKIV----GLHQIPAGGRRWAVNQRQCEQLM 507
+ + V A+ G GI L+ + +V LH+ + R E L
Sbjct: 364 RAIADGTGTEVIGISALNGDGIDTLKQHMGDLVKNLDKLHEASV----LVTSLRHYEALR 419
Query: 508 RTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564
+AL I E + +LR A +GQI+G+ ++EEVL+ IF KFCIGK
Sbjct: 420 NASDALQNALELIAHESETELIAFELRAALDYVGQITGKVVNEEVLNTIFDKFCIGK 476
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 98/175 (56%), Gaps = 6/175 (3%)
Query: 314 LLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDT 373
LL+ G+++ I GRPN GKSSLLNA + E AIVT+IAGTTRDV+ + + G+P+ ++DT
Sbjct: 3 LLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDT 62
Query: 374 AGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESST 433
AG+RE D VE+IG+ER+ AD ++ VDG T++ + +
Sbjct: 63 AGLREASDEVERIGIERAWQEIEQADRVLFM---VDGTTTDAVDPAEIWPEFIARLPAKL 119
Query: 434 PMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ 488
P+ +V NK D G++ + A TG+G+ L + + +G+H+
Sbjct: 120 PITVVRNKADITGETLGMSEVNGHAL---IRLSARTGEGVDVLRNHLKQSMGIHR 171
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 92/169 (54%), Gaps = 6/169 (3%)
Query: 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIR 377
G+++ I GRPN GKSSLLNA + E AIVT+IAGTTRDV+ + + G+P+ ++DTAG+R
Sbjct: 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR 63
Query: 378 ETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMIL 437
E D VE+IG+ER+ AD ++ VDG T++ + + P+ +
Sbjct: 64 EASDEVERIGIERAWQEIEQADRVLFM---VDGTTTDAVDPAEIWPEFIARLPAKLPITV 120
Query: 438 VINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGL 486
V NK D G++ + A TG+G+ L + + +G
Sbjct: 121 VRNKADITGETLGMSEVNGHAL---IRLSARTGEGVDVLRNHLKQSMGF 166
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 89/169 (52%), Gaps = 6/169 (3%)
Query: 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIR 377
G ++ I GRPN GKSSLLNA + E AIVT+IAGTTRDV+ + + G P+ ++DTAG+R
Sbjct: 4 GXKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGLR 63
Query: 378 ETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMIL 437
E D VE+IG+ER+ AD ++ VDG T++ + + P+ +
Sbjct: 64 EASDEVERIGIERAWQEIEQADRVLFX---VDGTTTDAVDPAEIWPEFIARLPAKLPITV 120
Query: 438 VINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGL 486
V NK D G++ + A TG+G+ L + + G
Sbjct: 121 VRNKADITGETLGXSEVNGHAL---IRLSARTGEGVDVLRNHLKQSXGF 166
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 101/209 (48%), Gaps = 22/209 (10%)
Query: 293 DKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGT 352
D + A+++ +N ET K + +Q ++GRPNVGKSSL+NA ER IV+ +AGT
Sbjct: 174 DLLDAVAEHFKNIPET----KYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGT 229
Query: 353 TRDVIEASVTVCGVPVTLLDTAGIRETDDIV---EKIGVERSEAVALGADVIIMTVSAVD 409
TRD ++ S T ++DTAG+R+ + EK V R+ ++V+ + + +
Sbjct: 230 TRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEE 289
Query: 410 GWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDH------- 462
G +D + + E+ +++V+NK D + + + DH
Sbjct: 290 GIIEQDKRIAGY------AHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYA 343
Query: 463 --VFTCAVTGQGIQDLETAIMKIVGLHQI 489
+F A+T + I L AI+K H +
Sbjct: 344 PILFMSALTKKRIHTLMPAIIKASENHSL 372
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 6/160 (3%)
Query: 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD 380
+AIVGRPNVGKS++ N + +IV + G TRD I +S L+DT GI D
Sbjct: 26 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 85
Query: 381 DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVIN 440
+ +++E ADVII V+ +G T+ D E+ + KK P++L +N
Sbjct: 86 EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKK------PVVLAVN 139
Query: 441 KIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAI 480
K+D +N ++ F + G G+ DL A+
Sbjct: 140 KLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAV 179
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 22/209 (10%)
Query: 293 DKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGT 352
D + A+++ +N ET K + +Q ++GRPNVGKSSL+NA ER IV+ +AGT
Sbjct: 154 DLLDAVAEHFKNIPET----KYNEEVIQFCLIGRPNVGKSSLVNAXLGEERVIVSNVAGT 209
Query: 353 TRDVIEASVTVCGVPVTLLDTAGIRETDDIV---EKIGVERSEAVALGADVIIMTVSAVD 409
TRD ++ S T ++DTAG R+ + EK V R+ ++V+ + + +
Sbjct: 210 TRDAVDTSFTYNQQEFVIVDTAGXRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEE 269
Query: 410 GWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDH------- 462
G +D + + E+ +++V+NK D + + + DH
Sbjct: 270 GIIEQDKRIAGY------AHEAGKAVVIVVNKWDAVDKDESTXKEFEENIRDHFQFLDYA 323
Query: 463 --VFTCAVTGQGIQDLETAIMKIVGLHQI 489
+F A+T + I L AI+K H +
Sbjct: 324 PILFXSALTKKRIHTLXPAIIKASENHSL 352
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 6/160 (3%)
Query: 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD 380
+AIVGRPNVGKS++ N + +IV + G TRD I +S L+DT GI D
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65
Query: 381 DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVIN 440
+ +++E ADVII V+ +G T+ D E+ + KK P++L +N
Sbjct: 66 EPFLAQIRQQAEIAXDEADVIIFXVNGREGVTAADEEVAKILYRTKK------PVVLAVN 119
Query: 441 KIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAI 480
K+D +N ++ F + G G+ DL A+
Sbjct: 120 KLDNTEXRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAV 159
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 17/181 (9%)
Query: 288 LNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVT 347
L ++ K+ D+E+ E + +++AIVGRPNVGKS+L NA ERA+V+
Sbjct: 157 LETIIKKLEEKGLDLESKPE-------ITDAIKVAIVGRPNVGKSTLFNAILNKERALVS 209
Query: 348 EIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDI----VEKIGVERSEAVALGADVIIM 403
I GTTRD ++ V + G +DTAG+R + VEK R ADV+++
Sbjct: 210 PIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVI 269
Query: 404 TVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHV 463
+ A G T +D + +++ ++V NK D +++ F + +
Sbjct: 270 VLDATQGITRQDQRXAGLXERRGRAS------VVVFNKWDLVVHREKRYDEFTKLFREKL 323
Query: 464 F 464
+
Sbjct: 324 Y 324
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 7/122 (5%)
Query: 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRET- 379
+ IVGRPNVGKS+L N K ++AIV + G TRD ++ +V G L+DT G+ +
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 63
Query: 380 DDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVI 439
DI+ + E + AD+++ V G T ED L + ++ +S+ ILV
Sbjct: 64 QDIISQKXKEVTLNXIREADLVLFVVDGKRGITKEDESLADFLR------KSTVDTILVA 117
Query: 440 NK 441
NK
Sbjct: 118 NK 119
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 89/175 (50%), Gaps = 22/175 (12%)
Query: 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVP----VTLLDTAGI 376
+AIVG+PNVGKS+LLN ++ +I++ AGTTR + + V +P + LDT GI
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRV---LGVKNIPNEAQIIFLDTPGI 68
Query: 377 RE--TDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELL-NRIQSNKKSTESST 433
E D++ VE ++ ADVI+ + A +GW D E+ N I+ K
Sbjct: 69 YEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNK------ 122
Query: 434 PMILVINKIDCAPSASN------EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMK 482
P+I+VINKID A N E +K + V A+ G + +L I+K
Sbjct: 123 PVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILK 177
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 89/175 (50%), Gaps = 22/175 (12%)
Query: 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVP----VTLLDTAGI 376
+AIVG+PNVGKS+LLN ++ +I++ AGTTR + + V +P + LDT GI
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRV---LGVKNIPNEAQIIFLDTPGI 69
Query: 377 RE--TDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELL-NRIQSNKKSTESST 433
E D++ VE ++ ADVI+ + A +GW D E+ N I+ K
Sbjct: 70 YEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNK------ 123
Query: 434 PMILVINKIDCAPSASN------EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMK 482
P+I+VINKID A N E +K + V A+ G + +L I+K
Sbjct: 124 PVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILK 178
>pdb|1XZP|B Chain B, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
Length = 150
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 21/134 (15%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVXXXXXXXXXXXXWRPTSHVVEYG 153
TI A+ T G GA+ I+RLSGP + IV + R S +V
Sbjct: 35 TIVAVATPPG--KGAIAILRLSGPDSWKIVQKHL----------------RTRSKIVPRK 76
Query: 154 VV---LDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
+ + +G VDEV+ V +P+SYT ED+VE+ CHG + ++++L L++GA +A+
Sbjct: 77 AIHGWIHENGEDVDEVVVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKSGARMAE 136
Query: 211 PGEFTLRAFLNGRL 224
PGEFT RAFLNG++
Sbjct: 137 PGEFTKRAFLNGKM 150
>pdb|1XZQ|B Chain B, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 149
Score = 72.4 bits (176), Expect = 7e-13, Method: Composition-based stats.
Identities = 51/133 (38%), Positives = 75/133 (56%), Gaps = 21/133 (15%)
Query: 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVXXXXXXXXXXXXWRPTSHVVEYG 153
TI A+ T G GA+ I+RLSGP + IV + R S +V
Sbjct: 35 TIVAVATPPG--KGAIAILRLSGPDSWKIVQKHL----------------RTRSKIVPRK 76
Query: 154 VV---LDRHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQ 210
+ + +G VDEV+ V +P+SYT ED+VE+ CHG + ++++L L++GA +A+
Sbjct: 77 AIHGWIHENGEDVDEVVVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKSGARMAE 136
Query: 211 PGEFTLRAFLNGR 223
PGEFT RAFLNG+
Sbjct: 137 PGEFTKRAFLNGK 149
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 7/163 (4%)
Query: 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRET 379
++ IVGRPNVGKSSL N K A+V ++ G TRD+ E V L+DT G+
Sbjct: 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG 62
Query: 380 DDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVI 439
D +KI E+ + A+V++ V T D E+ ++ K P+ILV
Sbjct: 63 DKWEKKIQ-EKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGK------PVILVA 115
Query: 440 NKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMK 482
K+D G F D + T + +G+++L AI +
Sbjct: 116 TKVDDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAIWE 158
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 99/190 (52%), Gaps = 21/190 (11%)
Query: 313 KLLQSGLQ--IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV-PVT 369
+L +G + I + GR NVGKSS +NA +IV++ AGTT D + S+ + + PVT
Sbjct: 27 RLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVT 86
Query: 370 LLDTAGIRETDDIVE--KIGVERSEAVALGADV-IIMTVSAVDGWTSEDSELLNRIQSNK 426
L+DT G+ DD+ E ++ VE++ V AD I++T SA T + +++N +
Sbjct: 87 LVDTPGL---DDVGELGRLRVEKARRVFYRADCGILVTDSA---PTPYEDDVVNLFK--- 137
Query: 427 KSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDH--VFTCAVTGQGIQDLETAIMKIV 484
E P ++V+NKID + E + S + + A+ +G D+ I +I+
Sbjct: 138 ---EMEIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEIL 194
Query: 485 -GLHQIPAGG 493
G +IP G
Sbjct: 195 PGDEEIPYLG 204
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 26/204 (12%)
Query: 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD 380
IAIVGRPNVGKS+LLN + +I + A TTR I T +DT G+
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH--- 64
Query: 381 DIVEKIGVER--SEAVALGADVIIMTVSAVDG--WTSEDSELLNRIQSNKKSTESSTPMI 436
+ EK + R ++A + + + + V+G WT +D +LN+++ E P+I
Sbjct: 65 -MEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLR------EGKAPVI 117
Query: 437 LVINKIDCAPSASN-----EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV--GLHQI 489
L +NK+D ++ ++ +F D V A TG + + + K + H
Sbjct: 118 LAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHF 177
Query: 490 PAG-----GRRWAVNQRQCEQLMR 508
P +R+ ++ E+LMR
Sbjct: 178 PEDYITDRSQRFMASEIIREKLMR 201
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 26/204 (12%)
Query: 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD 380
IAIVGRPNVGKS+LLN + +I + A TTR I T +DT G+
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH--- 67
Query: 381 DIVEKIGVER--SEAVALGADVIIMTVSAVDG--WTSEDSELLNRIQSNKKSTESSTPMI 436
+ EK + R ++A + + + + V+G WT +D +LN+++ E P+I
Sbjct: 68 -MEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLR------EGKAPVI 120
Query: 437 LVINKIDCAPSASN-----EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV--GLHQI 489
L +NK+D ++ ++ +F D V A TG + + + K + H
Sbjct: 121 LAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHF 180
Query: 490 PAG-----GRRWAVNQRQCEQLMR 508
P +R+ ++ E+LMR
Sbjct: 181 PEDYITDRSQRFMASEIIREKLMR 204
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 25/205 (12%)
Query: 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRE 378
+++A+ G PNVGK+SL NA + + + V G T + E T G + L+D G
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGT-KQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64
Query: 379 --TDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMI 436
I EKI R + AD++I+ +V+ S LL ++ KK +I
Sbjct: 65 LGYSSIDEKIA--RDYLLKGDADLVILVADSVNPEQSL-YLLLEILEMEKK-------VI 114
Query: 437 LVINKIDCAPSASNEWNKVGNSFNDH-----VFTCAVTGQGIQDLETAIMKIVG----LH 487
L + ID A + ++ H VFT +VTG+G+++L+ I++ LH
Sbjct: 115 LAMTAIDEAKKTGMKIDRY--ELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQKNTILH 172
Query: 488 Q-IPAGGRRWAVNQRQCEQLMRTKE 511
+ I G + ++ E +R K+
Sbjct: 173 RMILDYGEKVESEIKKVENFLRDKK 197
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 92/210 (43%), Gaps = 35/210 (16%)
Query: 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRE 378
+++A+ G PNVGK+SL NA + + + V G T + E T G + L+D G
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGT-KQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64
Query: 379 --TDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMI 436
I EKI R + AD++I+ +V+ ++S ++
Sbjct: 65 LGYSSIDEKIA--RDYLLKGDADLVILVADSVN---------------PEQSLYLLLEIL 107
Query: 437 LVINKIDCAPSASNEWNKVGNSFNDH----------VFTCAVTGQGIQDLETAIMKIVG- 485
K+ A +A +E K G + + VFT +VTG+G+++L+ I++
Sbjct: 108 EXEKKVILAXTAIDEAKKTGXKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQK 167
Query: 486 ---LHQ-IPAGGRRWAVNQRQCEQLMRTKE 511
LH+ I G + ++ E +R K+
Sbjct: 168 NTILHRXILDYGEKVESEIKKVENFLRDKK 197
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGI-RET 379
+AIVG+PNVGKS+LLN + A ++ TTR + +T + +DT G+ +
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 69
Query: 380 DDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVI 439
D + E + E EA+A + ++ V T ED EL+ R K P++LV
Sbjct: 70 DALGEFMDQEVYEALA-DVNAVVWVVDLRHPPTPED-ELVARAL---KPLVGKVPILLVG 124
Query: 440 NKIDCA 445
NK+D A
Sbjct: 125 NKLDAA 130
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 20/171 (11%)
Query: 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRE 378
+++A+ G PNVGK+SL NA + +++ V G T + E T G + L+D G
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64
Query: 379 T--DDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMI 436
I EKI R + AD++I+ +V+ S LL ++ KK +I
Sbjct: 65 LGYSSIDEKIA--RDYLLKGDADLVILVADSVNPEQSL-YLLLEILEMEKK-------VI 114
Query: 437 LVINKIDCAPSASNEWNKVGNSFNDH-----VFTCAVTGQGIQDLETAIMK 482
L + ID A + ++ H VFT +VTG+G+++L+ I++
Sbjct: 115 LAMTAIDEAKKTGMKIDRY--ELQKHLGIPVVFTSSVTGEGLEELKEKIVE 163
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 27/182 (14%)
Query: 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD 380
+ I+G + GK++LL+A S + E G T+ + VTV +T LDT G
Sbjct: 11 VTIMGHVDHGKTTLLDAIRHS-KVTEQEAGGITQHIGAYQVTVNDKKITFLDTPG----- 64
Query: 381 DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVIN 440
E R+ + D++I+ V+A DG + E +N ++ ++ P+I+ IN
Sbjct: 65 --HEAFTTMRARGAQV-TDIVILVVAADDGVMPQTVEAINHAKA------ANVPIIVAIN 115
Query: 441 KIDCAPSASN--------EWNKVGNSFNDHVFTC---AVTGQGIQDLETAIMKIVGLHQI 489
K+D P A+ E+N V + C A T +G+ L I+ + + ++
Sbjct: 116 KMD-KPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEEL 174
Query: 490 PA 491
A
Sbjct: 175 KA 176
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTL--LDTAGIR 377
++A VGR NVGKSSLLNA + A V++ G TR + V V L A +
Sbjct: 25 EVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVS 84
Query: 378 ETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWT-SEDSELLNRIQSNKKSTESSTPMI 436
+ + ++ K VE ++ + VDG +DS+L+ + KS + P
Sbjct: 85 KKERMLWKRLVEDYFKNRWSLQMVFL---LVDGRIPPQDSDLM--MVEWMKSL--NIPFT 137
Query: 437 LVINKIDCAPSASN-----EWNKVGNSFNDHVF--TCAVTGQGIQDL 476
+V+ K+D + E KV + + ++ T +VTG+GI +L
Sbjct: 138 IVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISEL 184
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 319 LQIAIVGRPNVGKSSLLNAWS-KSERAIVTEIAGTTRDVIEASVTVCGVPVTLL--DTAG 375
++ ++G P VGK+SL + ++ K ER + ++ DV E ++TV G TL+ DT
Sbjct: 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLG---EDVYERTLTVDGEDTTLVVVDTWE 61
Query: 376 IRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPM 435
+ D + E+ G ++ S D + E + L RIQ + P+
Sbjct: 62 AEKLDKSWSQ------ESCLQGGSAYVIVYSIADRGSFESASEL-RIQLRRTHQADHVPI 114
Query: 436 ILVINKIDCA 445
ILV NK D A
Sbjct: 115 ILVGNKADLA 124
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRE- 378
+IA++G PNVGKS++ NA + E + G T + E G ++D G+
Sbjct: 9 EIALIGNPNVGKSTIFNALT-GENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 67
Query: 379 TDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILV 438
T + +++I + R + D+++ V A T+ + L +Q E ++L
Sbjct: 68 TANSIDEI-IARDYIINEKPDLVVNIVDA----TALERNLYLTLQ----LMEMGANLLLA 118
Query: 439 INKIDCAPS 447
+NK+D A S
Sbjct: 119 LNKMDLAKS 127
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 11/130 (8%)
Query: 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD 380
+ I G PNVGKS+LL A + ++ I + TTR + ++DT G+ +
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIAS-YPFTTRGINVGQFEDGYFRYQIIDTPGLLDR- 227
Query: 381 DIVEKIGVERSEAVALG--ADVIIMTVSAVD--GWTSEDS-ELLNRIQSNKKSTESSTPM 435
I E+ +E+ +AL ++II + G+ E+ L + K P
Sbjct: 228 PISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK----DLPF 283
Query: 436 ILVINKIDCA 445
++VINKID A
Sbjct: 284 LVVINKIDVA 293
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTV-CGVPVTLLDTAGIRET 379
+ I+G + GK++LL+ K++ A + E G T+ + V++ G +T LDT G
Sbjct: 7 VTIMGHVDHGKTTLLDKLRKTQVAAM-EAGGITQHIGAFLVSLPSGEKITFLDTPG---- 61
Query: 380 DDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVI 439
R+ + D++I+ V+A DG + ++S + + ++ P++L I
Sbjct: 62 ---HAAFSAMRARGTQV-TDIVILVVAADDGVMKQ------TVESIQHAKDAHVPIVLAI 111
Query: 440 NKIDCAPS 447
NK D A +
Sbjct: 112 NKCDKAEA 119
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 14/134 (10%)
Query: 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAG 375
+S ++ ++G P VGKS+L + E E AG T D S+ V G +L+
Sbjct: 5 ESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLM---- 57
Query: 376 IRETDDIVEKIGVER--SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESST 433
DI E+ G +A+G D ++ S D + E + L R+Q +
Sbjct: 58 ---VYDIWEQDGGRWLPGHCMAMG-DAYVIVYSVTDKGSFEKASEL-RVQLRRARQTDDV 112
Query: 434 PMILVINKIDCAPS 447
P+ILV NK D S
Sbjct: 113 PIILVGNKSDLVRS 126
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 14/134 (10%)
Query: 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAG 375
+S ++ ++G P VGKS+L + E E AG T D S+ V G +L+
Sbjct: 5 ESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLM---- 57
Query: 376 IRETDDIVEKIGVER--SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESST 433
DI E+ G +A+G D ++ S D + E + L R+Q +
Sbjct: 58 ---VYDIWEQDGGRWLPGHCMAMG-DAYVIVYSVTDKGSFEKASEL-RVQLRRARQTDDV 112
Query: 434 PMILVINKIDCAPS 447
P+ILV NK D S
Sbjct: 113 PIILVGNKSDLVRS 126
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 37.0 bits (84), Expect = 0.031, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRE- 378
+IA++G PNVGKS++ NA + E + G T + E G ++D G+
Sbjct: 5 EIALIGNPNVGKSTIFNALT-GENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 63
Query: 379 TDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILV 438
T + +++I + R + D+++ V A T+ + L +Q E ++L
Sbjct: 64 TANSIDEI-IARDYIINEKPDLVVNIVDA----TALERNLYLTLQ----LMEMGANLLLA 114
Query: 439 INKIDCAPS 447
+NK+D A S
Sbjct: 115 LNKMDLAKS 123
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 37.0 bits (84), Expect = 0.031, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 16/173 (9%)
Query: 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTL--LDTAGIR 377
++ +VG P VGKS+L ++ V E T D V + G L LDTAG
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG-- 60
Query: 378 ETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMIL 437
E+ R + + G + V A++ S + R Q + PM+L
Sbjct: 61 -----QEEYSAMRDQYMRTGEG--FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL 113
Query: 438 VINKIDCAPSA--SNEWNKVGNSFN-DHVFTCAVTGQGIQDLETAIMKIVGLH 487
V NK D A S + + S+ ++ T A T QG++D +++ + H
Sbjct: 114 VGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRE- 378
+IA++G PNVGKS++ NA + E + G T + E G ++D G+
Sbjct: 5 EIALIGNPNVGKSTIFNALT-GENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 63
Query: 379 TDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILV 438
T + +++I + R + D+++ V A T+ + L +Q E ++L
Sbjct: 64 TANSIDEI-IARDYIINEKPDLVVNIVDA----TALERNLYLTLQ----LMEMGANLLLA 114
Query: 439 INKIDCAPS 447
+NK+D A S
Sbjct: 115 LNKMDLAKS 123
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 14/131 (10%)
Query: 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRE 378
++ ++G P VGKS+L + E E AG T D S+ V G +L+
Sbjct: 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLM------- 52
Query: 379 TDDIVEKIGVER--SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMI 436
DI E+ G +A+G D ++ S D + E + L R+Q + P+I
Sbjct: 53 VYDIWEQDGGRWLPGHCMAMG-DAYVIVYSVTDKGSFEKASEL-RVQLRRARQTDDVPII 110
Query: 437 LVINKIDCAPS 447
LV NK D S
Sbjct: 111 LVGNKSDLVRS 121
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 36.6 bits (83), Expect = 0.043, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 16/173 (9%)
Query: 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTL--LDTAGIR 377
++ +VG P VGKS+L ++ V E T D V + G L LDTAG
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG-- 60
Query: 378 ETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMIL 437
E+ R + + G + V A++ S + R Q + PM+L
Sbjct: 61 -----QEEYSAMRDQYMRTGEG--FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL 113
Query: 438 VINKIDCAPSA--SNEWNKVGNSFN-DHVFTCAVTGQGIQDLETAIMKIVGLH 487
V NK D A S + + S+ ++ T A T QG++D +++ + H
Sbjct: 114 VGNKCDLAGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 36.2 bits (82), Expect = 0.045, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 11/129 (8%)
Query: 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRE- 378
+IA++G PNVGKS++ NA + E + G T + E G ++D G+
Sbjct: 6 EIALIGNPNVGKSTIFNALT-GENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 64
Query: 379 TDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILV 438
T + +++I + R + D+++ V A T+ + L +Q E ++L
Sbjct: 65 TANSIDEI-IARDYIINEKPDLVVNIVDA----TALERNLYLTLQ----LXEXGANLLLA 115
Query: 439 INKIDCAPS 447
+NK D A S
Sbjct: 116 LNKXDLAKS 124
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 12/132 (9%)
Query: 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTR-DVIEASVTV----CGVPVTLLDTA 374
++A+VG VGKS+L++ ++ + + A T+ +V+ A VT+ V + LLDTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 375 GIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTP 434
G +D E+I + V +++ VS+++ + S + ++S + E
Sbjct: 82 G---SDLYKEQIS-QYWNGVYYA--ILVFDVSSMESFESCKA-WFELLKSARPDRERPLR 134
Query: 435 MILVINKIDCAP 446
+LV NK D P
Sbjct: 135 AVLVANKTDLPP 146
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRE 378
L I ++G PN GK++L N + S R V AG T + E + VTL+D G
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGS-RQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYS 62
Query: 379 TDDIVEKIGVERSEA----VALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTP 434
I + ++ A ++ AD++I V A S L + + E P
Sbjct: 63 LTTISSQTSLDEQIACHYILSGDADLLINVVDA--------SNLERNLYLTLQLLELGIP 114
Query: 435 MILVINKIDCA 445
I+ +N +D A
Sbjct: 115 CIVALNXLDIA 125
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRE 378
L I ++G PN GK++L N + S R V AG T + E + VTL+D G
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGS-RQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYS 62
Query: 379 TDDIVEKIGVERSEA----VALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTP 434
I + ++ A ++ AD++I V A S L + + E P
Sbjct: 63 LTTISSQTSLDEQIACHYILSGDADLLINVVDA--------SNLERNLYLTLQLLELGIP 114
Query: 435 MILVINKIDCA 445
I+ +N +D A
Sbjct: 115 CIVALNMLDIA 125
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 13/129 (10%)
Query: 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAG-IRET 379
I IVG N GK+SL N+ + + + T++ TT ++ + + L+DT G IR
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLF-TTMSPKRYAIPINNRKIMLVDTVGFIRGI 240
Query: 380 -DDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSN----KKSTESSTP 434
IV+ V SEA +D +I+ + + T ++ L+ +QS+ ++ S P
Sbjct: 241 PPQIVDAFFVTLSEAKY--SDALILVIDS----TFSENLLIETLQSSFEILREIGVSGKP 294
Query: 435 MILVINKID 443
+++ +NKID
Sbjct: 295 ILVTLNKID 303
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRE 378
L I ++G PN GK++L N + S R V AG T + E + VTL+D G
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGS-RQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYS 62
Query: 379 TDDIVEKIGVERSEA----VALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTP 434
I + ++ A ++ AD++I V A S L + + E P
Sbjct: 63 LTTISSQTSLDEQIACHYILSGDADLLINVVDA--------SNLERNLYLTLQLLELGIP 114
Query: 435 MILVINKIDCA 445
I+ +N +D A
Sbjct: 115 CIVALNMLDIA 125
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDT 373
G + IVG PNVGKS+L NA +K+ E A IE + V +P LD
Sbjct: 2 GFKCGIVGLPNVGKSTLFNALTKAG----IEAANYPFCTIEPNTGVVPMPDPRLDA 53
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTT--RDVIEASVTVCGVPVTLL--DT 373
+++ +VG VGKSS++ + K I T+ T D +E + V V L+ DT
Sbjct: 5 AIKMVVVGNGAVGKSSMIQRYCK---GIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDT 61
Query: 374 AGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESST 433
AG E D I ++A GA ++ S D E E ++ + +
Sbjct: 62 AGQEEFDAI--------TKAYYRGAQACVLVFSTTD---RESFEAISSWREKVVAEVGDI 110
Query: 434 PMILVINKID 443
P LV NKID
Sbjct: 111 PTALVQNKID 120
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 19/132 (14%)
Query: 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTL--LDTAGI 376
L++ I+G VGK+SL+N + + + + A D + V V VT+ DTAG+
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK-ATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 377 RETDDIVEKIGVERSEAVALGAD--VIIMTVSAVDGWTSEDS---ELLNRIQSNKKSTES 431
+ +GV A GAD V++ V+A + + + DS E L IQ++ + E
Sbjct: 68 ER----FQSLGV----AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL--IQASPRDPE- 116
Query: 432 STPMILVINKID 443
+ P +++ NKID
Sbjct: 117 NFPFVVLGNKID 128
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 319 LQIAIVGRPNVGKSSLLNAWSKS--ERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGI 376
++A+ G VGKSSL+ + K + + + T R VI ++C + +T DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQIT--DTTGS 61
Query: 377 RETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMI 436
+ + +++ + + A I+ S + E+ + + K S P++
Sbjct: 62 HQFPAM-QRLSISKGHA-------FILVYSITSRQSLEELKPIYEQICEIKGDVESIPIM 113
Query: 437 LVINKIDCAPS 447
LV NK D +PS
Sbjct: 114 LVGNKCDESPS 124
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 33.1 bits (74), Expect = 0.40, Method: Composition-based stats.
Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 16/173 (9%)
Query: 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTL--LDTAGIR 377
++ +VG VGKS+L ++ V E T D V + G L LDTAG
Sbjct: 5 KLVVVGADGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG-- 60
Query: 378 ETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMIL 437
E+ R + + G + V A++ S + R Q + PM+L
Sbjct: 61 -----QEEYSAMRDQYMRTGEG--FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL 113
Query: 438 VINKIDCAPSA--SNEWNKVGNSFN-DHVFTCAVTGQGIQDLETAIMKIVGLH 487
V NK D A S + + S+ ++ T A T QG++D +++ + H
Sbjct: 114 VGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 16/173 (9%)
Query: 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTL--LDTAGIR 377
++ +VG VGKS+L ++ V E T D V + G L LDTAG
Sbjct: 5 KLVVVGARGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG-- 60
Query: 378 ETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMIL 437
E+ R + + G + V A++ S + R Q + PM+L
Sbjct: 61 -----QEEYSAMRDQYMRTGEG--FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL 113
Query: 438 VINKIDCAPSA--SNEWNKVGNSFN-DHVFTCAVTGQGIQDLETAIMKIVGLH 487
V NK D A S + + S+ ++ T A T QG++D +++ + H
Sbjct: 114 VGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 19/132 (14%)
Query: 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTL--LDTAGI 376
L++ I+G VGK+SL+N + + + + A D + V V VT+ DTAG
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK-ATIGADFLTKEVMVDDRLVTMQIWDTAG- 66
Query: 377 RETDDIVEKIGVERSEAVALGAD--VIIMTVSAVDGWTSEDS---ELLNRIQSNKKSTES 431
+ + +GV A GAD V++ V+A + + + DS E L IQ++ + E
Sbjct: 67 ---QERFQSLGV----AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL--IQASPRDPE- 116
Query: 432 STPMILVINKID 443
+ P +++ NKID
Sbjct: 117 NFPFVVLGNKID 128
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 19/132 (14%)
Query: 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTL--LDTAGI 376
L++ I+G VGK+SL+N + + + + A D + V V VT+ DTAG
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK-ATIGADFLTKEVMVDDRLVTMQIWDTAG- 66
Query: 377 RETDDIVEKIGVERSEAVALGAD--VIIMTVSAVDGWTSEDS---ELLNRIQSNKKSTES 431
+ + +GV A GAD V++ V+A + + + DS E L IQ++ + E
Sbjct: 67 ---QERFQSLGV----AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL--IQASPRDPE- 116
Query: 432 STPMILVINKID 443
+ P +++ NKID
Sbjct: 117 NFPFVVLGNKID 128
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 310 NYDKLLQSG-----LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC 364
+D++ G ++ I+G PNVGKS+L+N +K A + G T
Sbjct: 107 KFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGIT---TSQQWVKV 163
Query: 365 GVPVTLLDTAGI 376
G + LLDT GI
Sbjct: 164 GKELELLDTPGI 175
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 13/129 (10%)
Query: 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAG-IRET 379
I IVG N GK+SL N+ + + + T++ TT ++ + + L+DT IR
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLF-TTMSPKRYAIPINNRKIMLVDTVSFIRGI 240
Query: 380 -DDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSN----KKSTESSTP 434
IV+ V SEA +D +I+ + + T ++ L+ +QS+ ++ S P
Sbjct: 241 PPQIVDAFFVTLSEAKY--SDALILVIDS----TFSENLLIETLQSSFEILREIGVSGKP 294
Query: 435 MILVINKID 443
+++ +NKID
Sbjct: 295 ILVTLNKID 303
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 319 LQIAIVGRPNVGKSSLLNAWSKS 341
L + IVG PNVGKS+L NA +++
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRA 24
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 319 LQIAIVGRPNVGKSSLLNAWSKS 341
L + IVG PNVGKS+L NA +++
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRA 24
>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
Horikoshii Ot3
Length = 397
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC 364
+I +VG+PNVGKS+ +A + + EIA IEA+V V
Sbjct: 2 EIGVVGKPNVGKSTFFSAAT----LVDVEIANYPFTTIEANVGVT 42
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 17/131 (12%)
Query: 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTA----GI 376
I IVG N GK+SL N+ + + + T++ TT ++ + + L+DT GI
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLF-TTMSPKRYAIPINNRKIMLVDTVPFIRGI 240
Query: 377 RETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSN----KKSTESS 432
IV+ V SEA +D +I+ + + T ++ L+ +QS+ ++ S
Sbjct: 241 --PPQIVDAFFVTLSEAKY--SDALILVIDS----TFSENLLIETLQSSFEILREIGVSG 292
Query: 433 TPMILVINKID 443
P+++ +NKID
Sbjct: 293 KPILVTLNKID 303
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 14/150 (9%)
Query: 345 IVTEIAGTTRDVIEASVTVCGVPVTL--LDTAGIRETDDIVEKIGVERSEAVALGADVII 402
V E T D V + G L LDTAG E+ R + + G
Sbjct: 28 FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG-------QEEYSAMRDQYMRTGEG--F 78
Query: 403 MTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA--SNEWNKVGNSFN 460
+ V A++ S + R Q + PM+LV NK D A S + + S+
Sbjct: 79 LCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYG 138
Query: 461 -DHVFTCAVTGQGIQDLETAIMKIVGLHQI 489
++ T A T QG++D +++ + H++
Sbjct: 139 IPYIETSAKTRQGVEDAFYTLVREIRQHKL 168
>pdb|3LWB|A Chain A, Crystal Structure Of Apo D-Alanine:d-Alanine Ligase (Ddl)
From Mycobacterium Tuberculosis
pdb|3LWB|B Chain B, Crystal Structure Of Apo D-Alanine:d-Alanine Ligase (Ddl)
From Mycobacterium Tuberculosis
Length = 373
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 456 GNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVR 515
G N+H +C G +++L++ ++ + PAG W + + L T L +
Sbjct: 18 GGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAG--SWVLTDANPDALTITNRELPQ 75
Query: 516 LKSSIEEELPL 526
+KS EL L
Sbjct: 76 VKSGSGTELAL 86
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 30/179 (16%)
Query: 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVP----VTLLDTAGI 376
+ +VG PN GKSSLL A +++ +IA + ++ V V TL D GI
Sbjct: 160 VGLVGYPNAGKSSLLAAMTRAH----PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGI 215
Query: 377 RETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMI 436
E + +G+E +A V++ + A D E L +++ +K + P +
Sbjct: 216 IEGASEGKGLGLEFLRHIAR-TRVLLYVLDAAD-------EPLKTLETLRKEVGAYDPAL 267
Query: 437 L------VINKID-----CAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIV 484
L +NK+D + ++ + G + + A+TG G+ L+ A+ +V
Sbjct: 268 LRRPSLVALNKVDLLEEEAVKALADALAREGLAV---LPVSALTGAGLPALKEALHALV 323
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 316 QSGLQIAIVGRPNVGKSSLLN-----AWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTL 370
+ G + +VG NVGKS+ +N A K + GTT D+IE + TL
Sbjct: 160 REGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGA---TL 216
Query: 371 LDTAGI 376
DT GI
Sbjct: 217 YDTPGI 222
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 20/137 (14%)
Query: 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLL---DTAG 375
L++ I+G VGK+SL++ + + + + A D + VTV G V + DTAG
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYK-ATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 376 IRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSED-----SELLNRIQSNKKSTE 430
+ + +GV A GAD ++ + + E+ E L + +N S E
Sbjct: 68 ----QERFQSLGV----AFYRGADCCVLVYDVTNASSFENIKSWRDEFL--VHANVNSPE 117
Query: 431 SSTPMILVINKIDCAPS 447
+ P +++ NKID S
Sbjct: 118 -TFPFVILGNKIDAEES 133
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 317 SGLQIAIVGRPNVGKSSLLNAWSKSE 342
+ L+I IVG PNVGKS+ N + S+
Sbjct: 21 TSLKIGIVGLPNVGKSTFFNVLTNSQ 46
>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
pdb|4DHE|B Chain B, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
Length = 223
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 320 QIAIVGRPNVGKSSLLNAWSKSER-AIVTEIAGTTRDVIEASVTVCGVPVT-LLDTAGI 376
+IA GR N GKS+ +N +R A ++ G T+ + SV PV L+D G
Sbjct: 31 EIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGY 89
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 19/132 (14%)
Query: 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTL--LDTAGI 376
L++ I+G VGK+SL+N + + + + A D + V V VT+ DTAG
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK-ATIGADFLTKEVMVDDRLVTMQIWDTAG- 66
Query: 377 RETDDIVEKIGVERSEAVALGAD--VIIMTVSAVDGWTSEDS---ELLNRIQSNKKSTES 431
+ + +GV A GAD V++ V+A + + + DS E L IQ++ + E
Sbjct: 67 ---QERFQSLGV----AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL--IQASPRDPE- 116
Query: 432 STPMILVINKID 443
+ P +++ NKID
Sbjct: 117 NFPFVVLGNKID 128
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 14/165 (8%)
Query: 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD 380
+ +VG P+VGKS+LL+ S ++ I T + T G D G+ E
Sbjct: 161 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGXVETDDGRSFVXADLPGLIEGA 220
Query: 381 DIVEKIG------VERSEAVALGADVIIMTVSAVDGWTSEDSEL-LNRIQSNKKSTESST 433
+G +ER+ + V ++ S ++G D L +N+ S +
Sbjct: 221 HQGVGLGHQFLRHIERTRVI-----VHVIDXSGLEGRDPYDDYLTINQELSEYNLRLTER 275
Query: 434 PMILVINKIDCAPSASN-EWNKVGNSFNDHVFT-CAVTGQGIQDL 476
P I+V NK D +A N E K + + VF AVT +G+++L
Sbjct: 276 PQIIVANKXDXPEAAENLEAFKEKLTDDYPVFPISAVTREGLREL 320
>pdb|1NI3|A Chain A, Structure Of The Schizosaccharomyces Pombe Ychf Gtpase
Length = 392
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTV 363
+ L+ IVG PNVGKS+ A +KS T D EA V V
Sbjct: 19 NNLKTGIVGXPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAV 65
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 17/80 (21%)
Query: 307 ETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSK-----SERAIVT-EIAGTTRDVIEAS 360
E A+ + + G + +VG NVGKS+ +N K +E I T GTT D+I+
Sbjct: 149 ELADAIEYYRGGKDVYVVGCTNVGKSTFINRXIKEFSDETENVITTSHFPGTTLDLID-- 206
Query: 361 VTVCGVPV----TLLDTAGI 376
+P+ +L DT GI
Sbjct: 207 -----IPLDEESSLYDTPGI 221
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 13/131 (9%)
Query: 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRE 378
L + ++G PN GK++L N + + R V AG T + E VTL+D G
Sbjct: 4 LTVGLIGNPNSGKTTLFNQLTGA-RQRVGNWAGVTVERKEGIFATTDHQVTLVDLPGTYS 62
Query: 379 TDDIVEKIGVERSEA----VALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTP 434
I + ++ A ++ AD++I V A S L + + E P
Sbjct: 63 LTTISSQTSLDEQIACHYILSGDADMLINVVDA--------SNLERNLYLTLQLLELGIP 114
Query: 435 MILVINKIDCA 445
++ +N +D A
Sbjct: 115 CVVALNMLDIA 125
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 59/147 (40%), Gaps = 14/147 (9%)
Query: 346 VTEIAGTTRDVIEASVTVCGVPVTL--LDTAGIRETDDIVEKIGVERSEAVALGADVIIM 403
V E T D V + G L LDTAGI E + R + + G +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAM-------RDQYMRTGEG--FL 79
Query: 404 TVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA--SNEWNKVGNSFN- 460
V A++ S + R Q + PM+LV NK D A S + + S+
Sbjct: 80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGI 139
Query: 461 DHVFTCAVTGQGIQDLETAIMKIVGLH 487
++ T A T QG++D +++ + H
Sbjct: 140 PYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGI 376
+ VG P+VGKS+LL+ + +E E TT + + G + +LD GI
Sbjct: 75 VGFVGFPSVGKSTLLSKLTGTESE-AAEYEFTTLVTVPGVIRYKGAKIQMLDLPGI 129
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 12/129 (9%)
Query: 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRE 378
+ +AI+GR GKS+L + + ++E D + TV PV L + +
Sbjct: 22 VNLAILGRRGAGKSALTVKFLT--KRFISEYDPNLEDTYSSEETVDHQPVHL----RVMD 75
Query: 379 TDDIVEKIGVERSEAVALGADVIIMTVSAVD--GWTSEDSELLNRIQSNKKSTESSTPMI 436
T D+ ER L + V +VD S L + + K T+ S P +
Sbjct: 76 TADLDTPRNCERY----LNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPAL 131
Query: 437 LVINKIDCA 445
L+ NK+D A
Sbjct: 132 LLGNKLDMA 140
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 59/147 (40%), Gaps = 14/147 (9%)
Query: 346 VTEIAGTTRDVIEASVTVCGVPVTL--LDTAGIRETDDIVEKIGVERSEAVALGADVIIM 403
V E T D V + G L LDTAG VE+ R + + G +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAG-------VEEYSAMRDQYMRTGEG--FL 79
Query: 404 TVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA--SNEWNKVGNSFN- 460
V A++ S + R Q + PM+LV NK D A S + + S+
Sbjct: 80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGI 139
Query: 461 DHVFTCAVTGQGIQDLETAIMKIVGLH 487
++ T A T QG++D +++ + H
Sbjct: 140 PYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 306 LETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG 365
L+ ++D+L + + IVG PN GKS+++N + V G T+ + S+
Sbjct: 91 LKKLSFDRLAR----VLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENG- 145
Query: 366 VPVTLLDTAGI 376
V +LDT GI
Sbjct: 146 --VKILDTPGI 154
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 9/127 (7%)
Query: 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD 380
I + G PNVGKSS +N S++ V + TT+++ ++DT G+ +
Sbjct: 32 IILSGAPNVGKSSFMNIVSRA-NVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDR- 89
Query: 381 DIVEKIGVERSEAVAL----GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMI 436
+ +E + AL G + I+ +S G T + E +N S KS S+ ++
Sbjct: 90 AFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIK--EQINLFYS-IKSVFSNKSIV 146
Query: 437 LVINKID 443
+ NKID
Sbjct: 147 IGFNKID 153
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 29.3 bits (64), Expect = 6.5, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 59/147 (40%), Gaps = 14/147 (9%)
Query: 346 VTEIAGTTRDVIEASVTVCGVPVTL--LDTAGIRETDDIVEKIGVERSEAVALGADVIIM 403
V E T D V + G L LDTAG+ E + R + + G +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAM-------RDQYMRTGEG--FL 79
Query: 404 TVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA--SNEWNKVGNSFN- 460
V A++ S + R Q + PM+LV NK D A S + + S+
Sbjct: 80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGI 139
Query: 461 DHVFTCAVTGQGIQDLETAIMKIVGLH 487
++ T A T QG++D +++ + H
Sbjct: 140 PYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 321 IAIVGRPNVGKSSLLNAWS 339
+A+VG PNVGK+++ NA +
Sbjct: 6 VALVGNPNVGKTTIFNALT 24
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 59/147 (40%), Gaps = 14/147 (9%)
Query: 346 VTEIAGTTRDVIEASVTVCGVPVTL--LDTAGIRETDDIVEKIGVERSEAVALGADVIIM 403
V E T D V + G L LDTAG+ E + R + + G +
Sbjct: 34 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAM-------RDQYMRTGEG--FL 84
Query: 404 TVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA--SNEWNKVGNSFN- 460
V A++ S + R Q + PM+LV NK D A S + + S+
Sbjct: 85 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGI 144
Query: 461 DHVFTCAVTGQGIQDLETAIMKIVGLH 487
++ T A T QG++D +++ + H
Sbjct: 145 PYIETSAKTRQGVEDAFYTLVREIRQH 171
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 27/172 (15%)
Query: 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD 380
+ I+G + GK+SLL + +S + E G T+ + V +T LDT G
Sbjct: 7 VTIMGHVDHGKTSLLE-YIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFT 65
Query: 381 DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVIN 440
+ R+ A D++++ V+A DG + I++ + + + P+++ +N
Sbjct: 66 SM-------RARG-AQATDIVVLVVAADDGVMPQT------IEAIQHAKAAQVPVVVAVN 111
Query: 441 KIDCAPSA-----SNEWNKVG------NSFNDHVFTCAVTGQGIQDLETAIM 481
KID P A NE ++ G + V A G GI +L AI+
Sbjct: 112 KID-KPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAIL 162
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 19/144 (13%)
Query: 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE-RAIVTEIAGTTRDVIEASVTVCG--VPVTLLD 372
Q +I + G VGKSS L K+E R ++ G D ++ V G + L D
Sbjct: 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGV--DFQMKTLIVDGERTVLQLWD 83
Query: 373 TAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNR--IQSNKKSTE 430
TAG +E + K +++ V L DV T E S L R + + +
Sbjct: 84 TAG-QERFRSIAKSYFRKADGVLLLYDV-----------TCEKSFLNIREWVDMIEDAAH 131
Query: 431 SSTPMILVINKIDCAPSASNEWNK 454
+ P++LV NK D +A+ E K
Sbjct: 132 ETVPIMLVGNKADIRDTAATEGQK 155
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 58/147 (39%), Gaps = 14/147 (9%)
Query: 346 VTEIAGTTRDVIEASVTVCGVPVTL--LDTAGIRETDDIVEKIGVERSEAVALGADVIIM 403
V E T D V + G L LDTAG E+ R E + G +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAG-------QEEYSAMRDEYMRTGEG--FL 79
Query: 404 TVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA--SNEWNKVGNSFN- 460
V A++ S + R Q + PM+LV NK D A S + + S+
Sbjct: 80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGI 139
Query: 461 DHVFTCAVTGQGIQDLETAIMKIVGLH 487
++ T A T QG++D +++ + H
Sbjct: 140 PYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 28.5 bits (62), Expect = 9.5, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 14/149 (9%)
Query: 346 VTEIAGTTRDVIEASVTVCGVPVTL--LDTAGIRETDDIVEKIGVERSEAVALGADVIIM 403
V E T D V + G L LDTAG E+ R + + G +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAG-------QEEYSAMRDQYMRTGEG--FL 79
Query: 404 TVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA--SNEWNKVGNSFN- 460
V A++ S + R Q + PM+LV NK D A S + + S+
Sbjct: 80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGI 139
Query: 461 DHVFTCAVTGQGIQDLETAIMKIVGLHQI 489
++ T A T QG++D +++ + H++
Sbjct: 140 PYIETSAKTRQGVEDAFYTLVREIRQHKL 168
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 28.5 bits (62), Expect = 9.5, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 14/149 (9%)
Query: 346 VTEIAGTTRDVIEASVTVCGVPVTL--LDTAGIRETDDIVEKIGVERSEAVALGADVIIM 403
V E T D V + G L LDTAG E+ R + + G +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAG-------QEEYSAMRDQYMRTGEG--FL 79
Query: 404 TVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA--SNEWNKVGNSFN- 460
V A++ S + R Q + PM+LV NK D A S + + S+
Sbjct: 80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGI 139
Query: 461 DHVFTCAVTGQGIQDLETAIMKIVGLHQI 489
++ T A T QG++D +++ + H++
Sbjct: 140 PYIETSAKTRQGVEDAFYTLVREIRQHKL 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,555,411
Number of Sequences: 62578
Number of extensions: 545736
Number of successful extensions: 1904
Number of sequences better than 100.0: 125
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 1831
Number of HSP's gapped (non-prelim): 131
length of query: 564
length of database: 14,973,337
effective HSP length: 104
effective length of query: 460
effective length of database: 8,465,225
effective search space: 3894003500
effective search space used: 3894003500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)