Query 008468
Match_columns 564
No_of_seqs 514 out of 3595
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 12:32:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008468.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008468hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0486 ThdF Predicted GTPase 100.0 1E-112 3E-117 890.6 47.3 452 90-564 2-454 (454)
2 PRK05291 trmE tRNA modificatio 100.0 6E-102 1E-106 839.4 47.8 447 90-564 2-449 (449)
3 TIGR00450 mnmE_trmE_thdF tRNA 100.0 8E-99 2E-103 810.9 47.5 438 99-564 1-442 (442)
4 KOG1191 Mitochondrial GTPase [ 100.0 4.8E-80 1E-84 642.1 31.6 467 94-564 43-531 (531)
5 PF10396 TrmE_N: GTP-binding p 100.0 5.2E-47 1.1E-51 330.3 11.0 114 94-223 1-114 (114)
6 TIGR03156 GTP_HflX GTP-binding 100.0 3.2E-28 6.9E-33 255.9 23.4 261 194-483 80-350 (351)
7 PRK11058 GTPase HflX; Provisio 99.9 3.2E-24 6.9E-29 230.7 24.9 293 161-485 40-362 (426)
8 COG1159 Era GTPase [General fu 99.9 4.3E-24 9.4E-29 213.4 19.7 163 320-488 8-175 (298)
9 COG1160 Predicted GTPases [Gen 99.9 3.8E-24 8.2E-29 224.6 16.5 160 319-484 4-164 (444)
10 COG1160 Predicted GTPases [Gen 99.9 9.8E-24 2.1E-28 221.5 16.4 164 316-485 176-351 (444)
11 PF02421 FeoB_N: Ferrous iron 99.9 4E-24 8.7E-29 198.9 10.9 153 319-480 1-156 (156)
12 TIGR00436 era GTP-binding prot 99.9 8.6E-23 1.9E-27 207.9 21.0 161 320-487 2-166 (270)
13 cd01878 HflX HflX subfamily. 99.9 2.5E-22 5.3E-27 195.4 21.5 192 286-483 6-203 (204)
14 PRK15494 era GTPase Era; Provi 99.9 4.9E-22 1.1E-26 208.6 21.3 166 317-488 51-219 (339)
15 COG2262 HflX GTPases [General 99.9 1.8E-21 3.8E-26 201.7 22.5 260 194-486 83-357 (411)
16 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.5E-21 3.2E-26 179.8 18.4 156 318-484 1-156 (157)
17 PRK00089 era GTPase Era; Revie 99.9 7.6E-21 1.6E-25 195.6 21.2 162 319-486 6-172 (292)
18 cd01894 EngA1 EngA1 subfamily. 99.9 4.2E-21 9.2E-26 176.9 16.9 155 322-483 1-156 (157)
19 PRK03003 GTP-binding protein D 99.9 3.4E-21 7.3E-26 211.0 19.1 163 317-485 210-382 (472)
20 PRK03003 GTP-binding protein D 99.9 5.2E-21 1.1E-25 209.5 19.4 163 318-486 38-200 (472)
21 cd04142 RRP22 RRP22 subfamily. 99.9 6.1E-21 1.3E-25 185.6 17.2 167 319-486 1-175 (198)
22 cd04136 Rap_like Rap-like subf 99.9 6.2E-21 1.3E-25 177.5 16.2 154 319-484 2-162 (163)
23 cd04120 Rab12 Rab12 subfamily. 99.9 8.7E-21 1.9E-25 185.1 17.5 155 319-485 1-163 (202)
24 TIGR03594 GTPase_EngA ribosome 99.9 7.9E-21 1.7E-25 205.7 18.8 163 317-485 171-344 (429)
25 cd01898 Obg Obg subfamily. Th 99.9 5E-21 1.1E-25 179.6 14.8 162 320-483 2-169 (170)
26 cd01895 EngA2 EngA2 subfamily. 99.9 1.3E-20 2.8E-25 176.0 17.4 160 318-483 2-173 (174)
27 PRK00093 GTP-binding protein D 99.9 1.4E-20 3E-25 204.2 20.1 163 317-485 172-344 (435)
28 TIGR03594 GTPase_EngA ribosome 99.9 1.1E-20 2.4E-25 204.5 19.1 160 320-485 1-160 (429)
29 cd04138 H_N_K_Ras_like H-Ras/N 99.9 1.6E-20 3.4E-25 174.0 16.9 154 319-484 2-161 (162)
30 cd04175 Rap1 Rap1 subgroup. T 99.9 1.3E-20 2.9E-25 176.2 16.4 154 319-484 2-162 (164)
31 smart00173 RAS Ras subfamily o 99.9 1.6E-20 3.6E-25 175.2 16.8 155 319-485 1-162 (164)
32 cd04145 M_R_Ras_like M-Ras/R-R 99.9 2E-20 4.4E-25 174.2 17.4 154 319-484 3-163 (164)
33 PRK12299 obgE GTPase CgtA; Rev 99.9 1.2E-20 2.7E-25 197.1 17.3 165 319-485 159-328 (335)
34 cd04109 Rab28 Rab28 subfamily. 99.8 2.5E-20 5.4E-25 183.3 17.9 161 319-488 1-169 (215)
35 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 2.7E-20 5.8E-25 176.7 17.2 156 319-485 3-164 (172)
36 cd01897 NOG NOG1 is a nucleola 99.8 2E-20 4.4E-25 175.3 15.5 158 319-484 1-167 (168)
37 cd04119 RJL RJL (RabJ-Like) su 99.8 4E-20 8.7E-25 172.3 17.0 157 319-484 1-166 (168)
38 cd04144 Ras2 Ras2 subfamily. 99.8 2.1E-20 4.6E-25 180.1 15.6 157 320-486 1-164 (190)
39 KOG0084 GTPase Rab1/YPT1, smal 99.8 2E-20 4.3E-25 175.9 14.6 158 318-486 9-173 (205)
40 cd01861 Rab6 Rab6 subfamily. 99.8 4.3E-20 9.4E-25 171.7 16.7 153 319-483 1-160 (161)
41 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 5E-20 1.1E-24 179.1 17.5 158 319-485 1-168 (201)
42 cd01867 Rab8_Rab10_Rab13_like 99.8 5.7E-20 1.2E-24 172.9 17.0 157 318-485 3-165 (167)
43 cd04121 Rab40 Rab40 subfamily. 99.8 5.9E-20 1.3E-24 177.4 17.3 155 318-485 6-167 (189)
44 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 7E-20 1.5E-24 171.6 17.2 156 319-485 3-164 (166)
45 cd01868 Rab11_like Rab11-like. 99.8 6.1E-20 1.3E-24 171.7 16.7 155 319-484 4-164 (165)
46 cd04140 ARHI_like ARHI subfami 99.8 5.3E-20 1.1E-24 172.7 16.1 155 319-483 2-163 (165)
47 cd01874 Cdc42 Cdc42 subfamily. 99.8 4.8E-20 1.1E-24 175.5 15.9 153 319-484 2-174 (175)
48 KOG0092 GTPase Rab5/YPT51 and 99.8 2.6E-20 5.7E-25 174.4 13.5 159 318-488 5-170 (200)
49 PRK00093 GTP-binding protein D 99.8 6.5E-20 1.4E-24 199.0 18.6 157 319-482 2-159 (435)
50 cd04122 Rab14 Rab14 subfamily. 99.8 9.3E-20 2E-24 171.1 17.0 154 319-484 3-163 (166)
51 cd01865 Rab3 Rab3 subfamily. 99.8 1.1E-19 2.3E-24 170.7 17.3 156 319-485 2-163 (165)
52 cd04176 Rap2 Rap2 subgroup. T 99.8 6.6E-20 1.4E-24 171.1 15.8 154 319-484 2-162 (163)
53 cd04112 Rab26 Rab26 subfamily. 99.8 9.9E-20 2.2E-24 175.6 17.4 158 319-487 1-165 (191)
54 PRK09518 bifunctional cytidyla 99.8 8.6E-20 1.9E-24 208.9 19.7 161 319-485 276-436 (712)
55 cd04127 Rab27A Rab27a subfamil 99.8 8E-20 1.7E-24 173.5 16.2 157 318-484 4-176 (180)
56 cd01864 Rab19 Rab19 subfamily. 99.8 8.6E-20 1.9E-24 171.0 16.1 155 318-483 3-164 (165)
57 cd04163 Era Era subfamily. Er 99.8 2.1E-19 4.6E-24 166.0 18.3 160 318-483 3-167 (168)
58 cd04101 RabL4 RabL4 (Rab-like4 99.8 1.3E-19 2.9E-24 169.0 16.9 155 319-484 1-163 (164)
59 cd04171 SelB SelB subfamily. 99.8 1.1E-19 2.4E-24 168.9 16.2 151 319-482 1-163 (164)
60 cd04124 RabL2 RabL2 subfamily. 99.8 1.4E-19 2.9E-24 169.5 16.8 155 319-485 1-158 (161)
61 cd04106 Rab23_lke Rab23-like s 99.8 1.2E-19 2.7E-24 168.8 16.2 153 319-483 1-161 (162)
62 cd04149 Arf6 Arf6 subfamily. 99.8 8.9E-20 1.9E-24 172.5 15.3 152 317-482 8-167 (168)
63 KOG0078 GTP-binding protein SE 99.8 9.9E-20 2.2E-24 173.4 15.5 159 317-486 11-175 (207)
64 PRK09518 bifunctional cytidyla 99.8 1.1E-19 2.5E-24 208.0 19.0 162 318-485 450-621 (712)
65 cd04143 Rhes_like Rhes_like su 99.8 7.6E-20 1.7E-24 183.8 15.5 161 319-489 1-175 (247)
66 cd04148 RGK RGK subfamily. Th 99.8 2.1E-19 4.6E-24 177.7 18.4 187 319-518 1-200 (221)
67 PTZ00369 Ras-like protein; Pro 99.8 1.6E-19 3.4E-24 173.9 16.8 157 318-486 5-168 (189)
68 cd04113 Rab4 Rab4 subfamily. 99.8 1.7E-19 3.7E-24 168.0 16.5 154 319-483 1-160 (161)
69 PRK12298 obgE GTPase CgtA; Rev 99.8 1.9E-19 4.1E-24 191.7 18.7 166 319-486 160-334 (390)
70 cd00877 Ran Ran (Ras-related n 99.8 1.3E-19 2.8E-24 170.8 15.5 153 319-485 1-159 (166)
71 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 1.4E-19 3E-24 173.8 15.9 154 318-484 5-179 (182)
72 cd04133 Rop_like Rop subfamily 99.8 1.5E-19 3.2E-24 172.6 15.9 152 319-484 2-172 (176)
73 cd04117 Rab15 Rab15 subfamily. 99.8 2.5E-19 5.4E-24 167.8 17.1 154 319-483 1-160 (161)
74 cd04157 Arl6 Arl6 subfamily. 99.8 1.3E-19 2.9E-24 168.4 15.0 153 320-482 1-161 (162)
75 TIGR02729 Obg_CgtA Obg family 99.8 1E-19 2.3E-24 189.9 15.7 164 319-484 158-328 (329)
76 cd04154 Arl2 Arl2 subfamily. 99.8 1.6E-19 3.6E-24 170.8 15.6 153 316-482 12-172 (173)
77 smart00175 RAB Rab subfamily o 99.8 3.1E-19 6.6E-24 166.1 17.1 155 319-485 1-162 (164)
78 cd01866 Rab2 Rab2 subfamily. 99.8 2.9E-19 6.4E-24 168.3 17.2 154 319-484 5-165 (168)
79 PRK12296 obgE GTPase CgtA; Rev 99.8 1.5E-19 3.4E-24 196.0 17.3 166 319-486 160-341 (500)
80 cd01871 Rac1_like Rac1-like su 99.8 1.7E-19 3.7E-24 171.6 15.5 152 319-483 2-173 (174)
81 cd04131 Rnd Rnd subfamily. Th 99.8 1.9E-19 4.1E-24 172.1 15.7 153 319-484 2-175 (178)
82 cd01875 RhoG RhoG subfamily. 99.8 2.8E-19 6.1E-24 172.6 16.6 156 318-486 3-178 (191)
83 cd04139 RalA_RalB RalA/RalB su 99.8 3.1E-19 6.8E-24 165.8 16.3 155 319-485 1-162 (164)
84 smart00177 ARF ARF-like small 99.8 2.8E-19 6E-24 170.2 16.2 154 317-484 12-173 (175)
85 cd04126 Rab20 Rab20 subfamily. 99.8 2.9E-19 6.3E-24 176.5 17.0 152 319-485 1-190 (220)
86 cd04158 ARD1 ARD1 subfamily. 99.8 3E-19 6.5E-24 168.6 16.4 152 320-485 1-161 (169)
87 cd04150 Arf1_5_like Arf1-Arf5- 99.8 2.1E-19 4.4E-24 168.3 15.0 150 319-482 1-158 (159)
88 PLN03118 Rab family protein; P 99.8 3.2E-19 7E-24 174.8 16.7 159 317-486 13-178 (211)
89 cd01860 Rab5_related Rab5-rela 99.8 3E-19 6.5E-24 166.3 15.7 154 319-484 2-162 (163)
90 cd04146 RERG_RasL11_like RERG/ 99.8 1.6E-19 3.5E-24 169.1 13.7 155 320-484 1-163 (165)
91 cd04160 Arfrp1 Arfrp1 subfamil 99.8 2.4E-19 5.2E-24 167.8 14.8 153 320-482 1-166 (167)
92 cd01892 Miro2 Miro2 subfamily. 99.8 2.7E-19 5.9E-24 169.2 15.2 157 316-485 2-166 (169)
93 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.8 4.3E-19 9.2E-24 166.3 15.8 159 318-487 22-187 (221)
94 cd01890 LepA LepA subfamily. 99.8 4.1E-19 8.9E-24 168.3 16.1 151 320-484 2-176 (179)
95 cd04116 Rab9 Rab9 subfamily. 99.8 5.6E-19 1.2E-23 166.1 16.8 157 318-483 5-169 (170)
96 cd04110 Rab35 Rab35 subfamily. 99.8 6.7E-19 1.5E-23 171.0 17.6 155 318-485 6-167 (199)
97 KOG0394 Ras-related GTPase [Ge 99.8 1.2E-19 2.7E-24 168.3 11.7 161 317-486 8-179 (210)
98 cd04177 RSR1 RSR1 subgroup. R 99.8 5.1E-19 1.1E-23 166.5 16.2 154 319-484 2-163 (168)
99 cd01881 Obg_like The Obg-like 99.8 1.4E-19 2.9E-24 170.4 12.1 159 323-483 1-175 (176)
100 PRK12297 obgE GTPase CgtA; Rev 99.8 4.9E-19 1.1E-23 189.8 17.7 165 319-486 159-328 (424)
101 cd01863 Rab18 Rab18 subfamily. 99.8 5.6E-19 1.2E-23 164.3 15.8 154 319-483 1-160 (161)
102 cd04123 Rab21 Rab21 subfamily. 99.8 7.9E-19 1.7E-23 162.5 16.7 154 319-484 1-161 (162)
103 cd01879 FeoB Ferrous iron tran 99.8 3.3E-19 7.3E-24 164.8 14.2 151 323-484 1-156 (158)
104 cd01862 Rab7 Rab7 subfamily. 99.8 9.1E-19 2E-23 164.3 17.4 158 319-485 1-167 (172)
105 cd04132 Rho4_like Rho4-like su 99.8 5.2E-19 1.1E-23 169.3 15.9 155 319-486 1-168 (187)
106 PLN03110 Rab GTPase; Provision 99.8 7.6E-19 1.6E-23 173.1 17.3 158 317-485 11-174 (216)
107 PLN00223 ADP-ribosylation fact 99.8 5.8E-19 1.3E-23 169.1 16.0 155 317-485 16-178 (181)
108 cd04125 RabA_like RabA-like su 99.8 1E-18 2.2E-23 167.7 17.6 157 319-486 1-163 (188)
109 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 9.5E-19 2.1E-23 163.6 16.8 150 320-484 2-165 (168)
110 cd04134 Rho3 Rho3 subfamily. 99.8 5.7E-19 1.2E-23 170.0 15.7 153 320-486 2-175 (189)
111 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 7.9E-19 1.7E-23 174.6 17.1 155 318-486 13-189 (232)
112 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 9.4E-19 2E-23 165.8 16.8 154 320-485 2-165 (170)
113 cd04118 Rab24 Rab24 subfamily. 99.8 1.2E-18 2.5E-23 167.8 17.7 155 319-485 1-166 (193)
114 smart00174 RHO Rho (Ras homolo 99.8 5.6E-19 1.2E-23 166.6 15.0 150 321-484 1-171 (174)
115 cd04115 Rab33B_Rab33A Rab33B/R 99.8 1.2E-18 2.5E-23 164.5 17.0 157 319-484 3-168 (170)
116 PTZ00133 ADP-ribosylation fact 99.8 7.6E-19 1.6E-23 168.4 15.8 156 316-485 15-178 (182)
117 PLN03071 GTP-binding nuclear p 99.8 5.9E-19 1.3E-23 174.3 15.5 157 317-486 12-173 (219)
118 cd04128 Spg1 Spg1p. Spg1p (se 99.8 9.5E-19 2.1E-23 167.8 16.3 154 319-485 1-166 (182)
119 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 1.1E-18 2.4E-23 167.3 16.1 156 318-485 3-170 (183)
120 cd04135 Tc10 TC10 subfamily. 99.8 8.8E-19 1.9E-23 165.3 15.2 153 319-484 1-173 (174)
121 cd04111 Rab39 Rab39 subfamily. 99.8 1.3E-18 2.8E-23 170.8 16.6 156 319-485 3-166 (211)
122 cd00876 Ras Ras family. The R 99.8 9.3E-19 2E-23 161.7 14.6 152 320-483 1-159 (160)
123 cd04130 Wrch_1 Wrch-1 subfamil 99.8 1.2E-18 2.6E-23 164.9 15.1 150 319-482 1-171 (173)
124 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 1.1E-18 2.5E-23 172.5 15.4 154 319-485 2-176 (222)
125 cd04114 Rab30 Rab30 subfamily. 99.8 2.6E-18 5.7E-23 161.1 17.2 155 319-484 8-168 (169)
126 cd04151 Arl1 Arl1 subfamily. 99.8 9.5E-19 2.1E-23 162.9 14.0 149 320-482 1-157 (158)
127 cd04147 Ras_dva Ras-dva subfam 99.8 1.6E-18 3.4E-23 168.3 15.9 155 320-486 1-164 (198)
128 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 1.7E-18 3.7E-23 164.4 15.5 152 317-482 14-173 (174)
129 cd04103 Centaurin_gamma Centau 99.8 1.4E-18 3.1E-23 162.8 14.7 147 319-483 1-157 (158)
130 smart00178 SAR Sar1p-like memb 99.8 1.9E-18 4.1E-23 165.8 15.3 154 316-483 15-183 (184)
131 cd01889 SelB_euk SelB subfamil 99.8 1.6E-18 3.5E-23 167.2 14.9 153 319-485 1-186 (192)
132 cd00154 Rab Rab family. Rab G 99.8 1.8E-18 4E-23 158.5 14.4 152 319-481 1-158 (159)
133 KOG0098 GTPase Rab2, small G p 99.8 8.5E-19 1.8E-23 163.1 12.1 155 319-484 7-167 (216)
134 cd00879 Sar1 Sar1 subfamily. 99.8 2.3E-18 4.9E-23 165.3 15.5 153 317-483 18-189 (190)
135 cd00878 Arf_Arl Arf (ADP-ribos 99.8 2.6E-18 5.5E-23 159.5 15.2 149 320-482 1-157 (158)
136 cd01893 Miro1 Miro1 subfamily. 99.8 1.9E-18 4.2E-23 162.4 14.5 153 319-485 1-164 (166)
137 KOG1423 Ras-like GTPase ERA [C 99.8 4.7E-18 1E-22 169.2 17.2 165 317-486 71-272 (379)
138 cd04156 ARLTS1 ARLTS1 subfamil 99.8 2.9E-18 6.3E-23 159.3 15.0 149 320-482 1-159 (160)
139 PLN03108 Rab family protein; P 99.8 4.9E-18 1.1E-22 166.6 17.1 156 318-485 6-168 (210)
140 COG0370 FeoB Fe2+ transport sy 99.8 8.5E-18 1.8E-22 184.2 20.6 161 319-488 4-167 (653)
141 cd00881 GTP_translation_factor 99.8 4.5E-18 9.8E-23 161.7 16.3 151 320-484 1-186 (189)
142 cd04155 Arl3 Arl3 subfamily. 99.8 4.2E-18 9.2E-23 160.5 15.7 152 317-482 13-172 (173)
143 PRK04213 GTP-binding protein; 99.8 6.1E-18 1.3E-22 164.0 17.2 156 318-485 9-192 (201)
144 cd01873 RhoBTB RhoBTB subfamil 99.8 4.1E-18 8.8E-23 165.4 15.2 153 318-483 2-194 (195)
145 COG1084 Predicted GTPase [Gene 99.8 2.2E-17 4.7E-22 166.8 20.5 217 227-485 109-336 (346)
146 cd00157 Rho Rho (Ras homology) 99.8 6E-18 1.3E-22 158.6 15.2 151 319-482 1-170 (171)
147 PRK09554 feoB ferrous iron tra 99.8 1.2E-17 2.7E-22 191.1 20.6 159 318-485 3-168 (772)
148 cd04137 RheB Rheb (Ras Homolog 99.8 7.8E-18 1.7E-22 160.0 15.8 156 319-486 2-164 (180)
149 cd01870 RhoA_like RhoA-like su 99.8 6.5E-18 1.4E-22 159.5 14.5 153 319-484 2-174 (175)
150 PF00071 Ras: Ras family; Int 99.8 7.5E-18 1.6E-22 156.9 14.5 153 320-484 1-160 (162)
151 KOG0080 GTPase Rab18, small G 99.8 4.5E-18 9.8E-23 154.3 12.0 157 318-485 11-174 (209)
152 cd04159 Arl10_like Arl10-like 99.8 1.3E-17 2.8E-22 153.1 15.0 149 321-482 2-158 (159)
153 smart00176 RAN Ran (Ras-relate 99.8 1.6E-17 3.5E-22 161.8 16.2 149 324-486 1-155 (200)
154 TIGR00231 small_GTP small GTP- 99.8 3.1E-17 6.6E-22 149.4 17.1 151 319-481 2-160 (161)
155 TIGR02528 EutP ethanolamine ut 99.8 1.1E-17 2.4E-22 152.7 14.1 136 320-481 2-141 (142)
156 cd01891 TypA_BipA TypA (tyrosi 99.8 1.2E-17 2.6E-22 161.4 15.1 143 320-476 4-173 (194)
157 cd04161 Arl2l1_Arl13_like Arl2 99.8 1.3E-17 2.9E-22 157.3 15.0 149 320-482 1-166 (167)
158 TIGR03598 GTPase_YsxC ribosome 99.8 1.5E-17 3.2E-22 158.8 14.8 149 316-474 16-179 (179)
159 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 2E-17 4.4E-22 155.6 14.6 146 321-481 2-162 (164)
160 PRK00454 engB GTP-binding prot 99.7 7.2E-17 1.6E-21 155.3 18.5 159 317-485 23-194 (196)
161 TIGR00437 feoB ferrous iron tr 99.7 1.8E-17 3.9E-22 185.5 16.2 151 325-484 1-154 (591)
162 cd00880 Era_like Era (E. coli 99.7 4.3E-17 9.3E-22 148.5 15.7 154 323-483 1-162 (163)
163 PRK15467 ethanolamine utilizat 99.7 2.6E-17 5.7E-22 154.3 13.9 142 320-485 3-147 (158)
164 KOG0087 GTPase Rab11/YPT3, sma 99.7 2.5E-17 5.5E-22 156.5 13.0 157 316-484 12-175 (222)
165 cd01896 DRG The developmentall 99.7 4.2E-17 9.2E-22 162.6 15.3 162 320-486 2-227 (233)
166 PF00009 GTP_EFTU: Elongation 99.7 7.8E-18 1.7E-22 162.1 9.7 152 319-484 4-186 (188)
167 cd04129 Rho2 Rho2 subfamily. 99.7 4.5E-17 9.8E-22 156.5 14.8 154 319-485 2-173 (187)
168 PF00025 Arf: ADP-ribosylation 99.7 7.9E-17 1.7E-21 153.6 15.0 155 316-484 12-175 (175)
169 KOG0079 GTP-binding protein H- 99.7 3E-17 6.4E-22 147.1 10.8 154 319-485 9-169 (198)
170 cd04166 CysN_ATPS CysN_ATPS su 99.7 3.2E-17 7E-22 160.6 12.1 144 320-476 1-185 (208)
171 KOG1489 Predicted GTP-binding 99.7 2.1E-17 4.5E-22 165.6 10.8 163 319-483 197-365 (366)
172 TIGR00487 IF-2 translation ini 99.7 1.2E-16 2.7E-21 178.0 17.7 152 316-482 85-247 (587)
173 KOG0395 Ras-related GTPase [Ge 99.7 1E-16 2.2E-21 155.5 14.6 157 318-486 3-166 (196)
174 KOG0095 GTPase Rab30, small G 99.7 6.7E-17 1.4E-21 144.9 11.7 154 319-484 8-168 (213)
175 PF01926 MMR_HSR1: 50S ribosom 99.7 1.1E-16 2.4E-21 141.7 12.8 115 320-441 1-116 (116)
176 KOG0093 GTPase Rab3, small G p 99.7 1.1E-16 2.5E-21 143.3 12.7 158 318-486 21-184 (193)
177 COG1163 DRG Predicted GTPase [ 99.7 1.3E-16 2.9E-21 160.6 14.4 193 289-486 29-290 (365)
178 PRK05306 infB translation init 99.7 2.3E-16 5E-21 179.9 17.8 152 316-482 288-449 (787)
179 COG0218 Predicted GTPase [Gene 99.7 7.6E-16 1.7E-20 146.9 18.3 160 317-485 23-197 (200)
180 KOG0091 GTPase Rab39, small G 99.7 5.8E-17 1.2E-21 147.6 8.9 160 317-485 7-173 (213)
181 CHL00189 infB translation init 99.7 3.7E-16 8E-21 176.8 16.0 155 315-484 241-409 (742)
182 TIGR00475 selB selenocysteine- 99.7 5.7E-16 1.2E-20 173.3 16.9 154 319-486 1-167 (581)
183 TIGR01393 lepA GTP-binding pro 99.7 6E-16 1.3E-20 173.3 16.6 153 320-486 5-181 (595)
184 cd01886 EF-G Elongation factor 99.7 3.9E-16 8.4E-21 158.9 13.7 144 320-477 1-168 (270)
185 cd01876 YihA_EngB The YihA (En 99.7 1.9E-15 4.1E-20 140.0 16.7 155 320-483 1-169 (170)
186 cd01884 EF_Tu EF-Tu subfamily. 99.7 6.1E-16 1.3E-20 150.2 13.9 141 319-473 3-171 (195)
187 PTZ00132 GTP-binding nuclear p 99.7 3.6E-15 7.7E-20 146.5 19.5 156 317-485 8-168 (215)
188 PRK12317 elongation factor 1-a 99.7 3.7E-16 7.9E-21 169.3 13.2 147 317-476 5-196 (425)
189 KOG0086 GTPase Rab4, small G p 99.7 7.3E-16 1.6E-20 138.9 12.5 155 319-484 10-170 (214)
190 cd01888 eIF2_gamma eIF2-gamma 99.7 1E-15 2.2E-20 149.4 14.4 154 319-485 1-199 (203)
191 KOG0073 GTP-binding ADP-ribosy 99.6 6.3E-15 1.4E-19 134.7 16.9 154 318-485 16-178 (185)
192 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 4.6E-15 1E-19 143.8 16.0 166 319-486 1-185 (196)
193 cd04170 EF-G_bact Elongation f 99.6 1.6E-15 3.5E-20 154.3 13.2 151 320-484 1-172 (268)
194 cd01899 Ygr210 Ygr210 subfamil 99.6 8.7E-15 1.9E-19 152.0 18.4 163 321-486 1-270 (318)
195 cd00882 Ras_like_GTPase Ras-li 99.6 2.2E-15 4.9E-20 135.2 12.1 149 323-481 1-156 (157)
196 PRK09866 hypothetical protein; 99.6 4E-14 8.7E-19 154.9 23.8 110 366-483 230-351 (741)
197 cd04102 RabL3 RabL3 (Rab-like3 99.6 4.9E-15 1.1E-19 144.6 14.8 142 319-470 1-175 (202)
198 COG3596 Predicted GTPase [Gene 99.6 7E-15 1.5E-19 145.7 15.5 165 316-485 37-222 (296)
199 TIGR00491 aIF-2 translation in 99.6 6E-15 1.3E-19 164.4 16.8 149 319-483 5-214 (590)
200 PRK10218 GTP-binding protein; 99.6 9.5E-15 2.1E-19 163.3 17.8 155 319-487 6-197 (607)
201 PRK05433 GTP-binding protein L 99.6 6.1E-15 1.3E-19 165.4 16.2 154 319-486 8-185 (600)
202 COG0536 Obg Predicted GTPase [ 99.6 2.2E-15 4.7E-20 153.0 11.1 166 319-486 160-334 (369)
203 KOG0088 GTPase Rab21, small G 99.6 3.6E-16 7.8E-21 141.6 4.4 155 318-484 13-174 (218)
204 TIGR01394 TypA_BipA GTP-bindin 99.6 8.4E-15 1.8E-19 163.8 16.0 154 320-487 3-193 (594)
205 PRK10512 selenocysteinyl-tRNA- 99.6 7.7E-15 1.7E-19 164.8 15.7 152 320-485 2-166 (614)
206 cd04168 TetM_like Tet(M)-like 99.6 1.5E-14 3.3E-19 144.6 16.2 114 320-447 1-131 (237)
207 cd04165 GTPBP1_like GTPBP1-lik 99.6 1.1E-14 2.4E-19 144.4 14.1 149 320-482 1-220 (224)
208 TIGR00484 EF-G translation elo 99.6 1.6E-14 3.4E-19 165.3 16.0 138 319-470 11-171 (689)
209 cd01883 EF1_alpha Eukaryotic e 99.6 6.5E-15 1.4E-19 145.4 11.1 142 320-474 1-194 (219)
210 KOG1707 Predicted Ras related/ 99.6 3.8E-15 8.1E-20 159.6 9.7 207 316-538 7-222 (625)
211 KOG0075 GTP-binding ADP-ribosy 99.6 2.7E-14 5.8E-19 128.2 13.2 157 316-485 18-182 (186)
212 KOG0410 Predicted GTP binding 99.6 2.7E-14 5.9E-19 143.5 14.4 188 289-485 147-341 (410)
213 PRK12736 elongation factor Tu; 99.6 2.4E-14 5.2E-19 153.5 14.5 156 316-485 10-201 (394)
214 KOG0083 GTPase Rab26/Rab37, sm 99.6 1.7E-15 3.8E-20 133.5 4.6 154 323-486 2-161 (192)
215 CHL00071 tufA elongation facto 99.6 2.5E-14 5.5E-19 154.1 14.3 143 316-472 10-180 (409)
216 PF08477 Miro: Miro-like prote 99.6 3.7E-15 8E-20 131.8 6.1 115 320-443 1-119 (119)
217 PRK00007 elongation factor G; 99.6 3.3E-14 7.2E-19 162.6 15.5 146 319-478 11-180 (693)
218 KOG0097 GTPase Rab14, small G 99.6 3E-14 6.5E-19 126.8 11.7 155 318-484 11-172 (215)
219 PF10662 PduV-EutP: Ethanolami 99.6 3.9E-14 8.4E-19 129.5 12.5 135 320-481 3-142 (143)
220 TIGR00483 EF-1_alpha translati 99.5 2.5E-14 5.5E-19 155.0 12.6 147 316-475 5-197 (426)
221 KOG0081 GTPase Rab27, small G 99.5 5.5E-15 1.2E-19 134.1 5.6 155 319-484 10-180 (219)
222 PRK12735 elongation factor Tu; 99.5 3.9E-14 8.5E-19 152.0 13.3 155 316-484 10-202 (396)
223 cd01853 Toc34_like Toc34-like 99.5 2.4E-13 5.2E-18 136.8 18.0 135 314-449 27-166 (249)
224 PRK09602 translation-associate 99.5 2.1E-13 4.5E-18 145.8 18.5 166 319-487 2-273 (396)
225 PLN03127 Elongation factor Tu; 99.5 9.1E-14 2E-18 150.9 15.6 156 316-485 59-252 (447)
226 cd04169 RF3 RF3 subfamily. Pe 99.5 3.6E-14 7.8E-19 144.3 11.6 116 320-449 4-140 (267)
227 PRK05506 bifunctional sulfate 99.5 3.1E-14 6.6E-19 161.5 12.1 147 316-475 22-211 (632)
228 TIGR03680 eif2g_arch translati 99.5 5.5E-14 1.2E-18 151.3 13.4 156 317-485 3-196 (406)
229 COG1100 GTPase SAR1 and relate 99.5 1.8E-13 3.9E-18 134.1 15.7 155 319-485 6-185 (219)
230 PRK04004 translation initiatio 99.5 1.2E-13 2.6E-18 154.4 16.3 149 318-482 6-215 (586)
231 PRK05124 cysN sulfate adenylyl 99.5 4.8E-14 1E-18 154.3 12.8 149 316-477 25-217 (474)
232 cd04104 p47_IIGP_like p47 (47- 99.5 1.4E-13 3.1E-18 133.7 14.7 155 318-485 1-184 (197)
233 TIGR02034 CysN sulfate adenyly 99.5 4.8E-14 1E-18 151.8 12.3 144 319-475 1-187 (406)
234 PRK12739 elongation factor G; 99.5 1.2E-13 2.7E-18 157.9 16.4 139 319-471 9-170 (691)
235 PLN00023 GTP-binding protein; 99.5 1.1E-13 2.3E-18 142.6 13.5 122 317-447 20-166 (334)
236 PRK00049 elongation factor Tu; 99.5 1E-13 2.2E-18 148.7 13.7 155 316-484 10-202 (396)
237 cd04105 SR_beta Signal recogni 99.5 1.6E-13 3.6E-18 133.9 13.8 119 320-448 2-125 (203)
238 PRK04000 translation initiatio 99.5 1.4E-13 3E-18 148.4 14.5 157 316-485 7-201 (411)
239 TIGR00485 EF-Tu translation el 99.5 1.3E-13 2.8E-18 147.9 14.1 154 316-483 10-199 (394)
240 KOG0393 Ras-related small GTPa 99.5 3E-14 6.5E-19 136.5 8.1 155 318-485 4-179 (198)
241 PTZ00258 GTP-binding protein; 99.5 1.6E-13 3.6E-18 145.3 14.2 92 315-408 18-126 (390)
242 COG0532 InfB Translation initi 99.5 2.9E-13 6.4E-18 145.1 16.0 152 318-484 5-169 (509)
243 KOG0070 GTP-binding ADP-ribosy 99.5 1.8E-13 3.9E-18 128.2 11.6 156 316-485 15-178 (181)
244 PLN03126 Elongation factor Tu; 99.5 4.2E-13 9.1E-18 146.6 16.0 143 316-472 79-249 (478)
245 cd04167 Snu114p Snu114p subfam 99.5 3E-13 6.4E-18 132.9 12.6 112 320-445 2-136 (213)
246 COG2229 Predicted GTPase [Gene 99.5 1.2E-12 2.7E-17 122.5 15.7 154 317-483 9-176 (187)
247 KOG0462 Elongation factor-type 99.5 4.4E-13 9.6E-18 142.7 13.7 155 320-488 62-238 (650)
248 PF12631 GTPase_Cys_C: Catalyt 99.5 1.7E-13 3.8E-18 111.6 7.9 70 492-561 4-73 (73)
249 TIGR00991 3a0901s02IAP34 GTP-b 99.5 1.9E-12 4E-17 132.7 17.3 131 316-448 36-169 (313)
250 PRK00741 prfC peptide chain re 99.4 1.3E-12 2.8E-17 144.5 16.6 115 319-447 11-146 (526)
251 KOG1145 Mitochondrial translat 99.4 1.2E-12 2.6E-17 139.3 15.2 157 313-484 148-315 (683)
252 PRK13351 elongation factor G; 99.4 7.7E-13 1.7E-17 151.6 14.8 115 319-447 9-140 (687)
253 KOG3883 Ras family small GTPas 99.4 1.9E-12 4E-17 117.2 13.8 164 315-486 6-176 (198)
254 PRK09435 membrane ATPase/prote 99.4 9.1E-12 2E-16 129.8 20.5 148 316-485 54-260 (332)
255 PTZ00099 rab6; Provisional 99.4 1.8E-12 3.9E-17 123.8 14.1 123 353-486 14-143 (176)
256 cd01885 EF2 EF2 (for archaea a 99.4 1.9E-12 4E-17 128.2 13.5 112 320-445 2-138 (222)
257 PTZ00141 elongation factor 1- 99.4 1.2E-12 2.6E-17 142.4 13.1 145 317-475 6-203 (446)
258 KOG1490 GTP-binding protein CR 99.4 7.6E-12 1.6E-16 132.1 17.8 161 316-484 166-340 (620)
259 KOG4252 GTP-binding protein [S 99.4 8.7E-14 1.9E-18 128.7 2.3 152 319-484 21-180 (246)
260 cd01850 CDC_Septin CDC/Septin. 99.4 3E-12 6.5E-17 130.9 13.6 123 319-448 5-159 (276)
261 KOG0076 GTP-binding ADP-ribosy 99.4 1E-12 2.2E-17 121.4 8.4 161 316-487 15-189 (197)
262 TIGR00503 prfC peptide chain r 99.4 7.4E-12 1.6E-16 138.6 16.1 114 319-446 12-146 (527)
263 TIGR00750 lao LAO/AO transport 99.3 1.8E-11 3.9E-16 126.7 16.0 131 364-519 125-268 (300)
264 PRK12740 elongation factor G; 99.3 1E-11 2.2E-16 142.0 14.8 110 324-447 1-127 (668)
265 KOG0071 GTP-binding ADP-ribosy 99.3 3.1E-11 6.7E-16 107.8 12.8 154 317-484 16-177 (180)
266 cd01882 BMS1 Bms1. Bms1 is an 99.3 2.5E-11 5.3E-16 120.6 13.4 135 315-471 36-182 (225)
267 PTZ00327 eukaryotic translatio 99.3 1.9E-11 4.1E-16 132.9 12.8 156 317-485 33-233 (460)
268 PLN00043 elongation factor 1-a 99.3 2.7E-11 5.8E-16 131.8 12.7 146 316-475 5-203 (447)
269 COG1217 TypA Predicted membran 99.3 5.4E-11 1.2E-15 124.8 14.2 155 320-488 7-198 (603)
270 TIGR02836 spore_IV_A stage IV 99.3 4.7E-11 1E-15 125.2 13.4 160 318-485 17-234 (492)
271 PF04548 AIG1: AIG1 family; I 99.3 4.7E-11 1E-15 117.4 12.6 129 319-449 1-133 (212)
272 COG0481 LepA Membrane GTPase L 99.2 4.2E-11 9.1E-16 125.9 11.6 154 320-487 11-188 (603)
273 KOG1486 GTP-binding protein DR 99.2 9.7E-11 2.1E-15 114.3 11.9 161 319-486 63-289 (364)
274 KOG0074 GTP-binding ADP-ribosy 99.2 4.6E-11 9.9E-16 106.9 8.7 154 316-483 15-177 (185)
275 PRK09601 GTP-binding protein Y 99.2 4.6E-11 9.9E-16 125.5 10.1 89 318-408 2-107 (364)
276 COG5256 TEF1 Translation elong 99.2 7.5E-11 1.6E-15 123.1 11.5 147 317-476 6-202 (428)
277 cd01900 YchF YchF subfamily. 99.2 3.6E-11 7.9E-16 122.3 8.5 86 321-408 1-103 (274)
278 COG0012 Predicted GTPase, prob 99.2 9.9E-11 2.2E-15 121.4 11.7 89 318-408 2-108 (372)
279 TIGR00490 aEF-2 translation el 99.2 8E-11 1.7E-15 135.4 11.7 115 319-447 20-153 (720)
280 KOG0072 GTP-binding ADP-ribosy 99.2 8.4E-11 1.8E-15 105.6 7.9 155 318-486 18-180 (182)
281 PF00350 Dynamin_N: Dynamin fa 99.2 1.3E-10 2.8E-15 109.1 9.6 113 321-442 1-168 (168)
282 PRK13768 GTPase; Provisional 99.2 2.9E-10 6.4E-15 114.8 12.6 118 367-487 98-249 (253)
283 PF04670 Gtr1_RagA: Gtr1/RagA 99.1 2E-10 4.4E-15 114.0 10.9 161 320-484 1-175 (232)
284 PRK14845 translation initiatio 99.1 4.1E-10 8.8E-15 131.9 15.0 140 329-483 472-671 (1049)
285 TIGR00993 3a0901s04IAP86 chlor 99.1 5.8E-10 1.3E-14 123.0 14.6 131 315-447 115-251 (763)
286 PTZ00416 elongation factor 2; 99.1 2.8E-10 6E-15 132.7 11.7 113 319-445 20-157 (836)
287 PLN00116 translation elongatio 99.1 4.2E-10 9E-15 131.5 13.1 113 319-445 20-163 (843)
288 COG0480 FusA Translation elong 99.1 1.3E-09 2.8E-14 123.4 16.1 119 319-451 11-147 (697)
289 smart00053 DYNc Dynamin, GTPas 99.1 2.2E-09 4.7E-14 107.3 15.4 77 366-448 125-208 (240)
290 PRK07560 elongation factor EF- 99.1 5.7E-10 1.2E-14 128.7 12.4 114 319-446 21-153 (731)
291 COG4917 EutP Ethanolamine util 99.1 3.7E-10 8E-15 99.4 8.0 137 320-482 3-143 (148)
292 PF09439 SRPRB: Signal recogni 99.1 1.4E-10 3E-15 110.6 5.7 120 319-448 4-128 (181)
293 KOG0096 GTPase Ran/TC4/GSP1 (n 99.1 5.2E-10 1.1E-14 105.0 8.9 155 318-486 10-170 (216)
294 COG2895 CysN GTPases - Sulfate 99.0 4.7E-10 1E-14 114.5 8.5 144 316-475 4-193 (431)
295 COG1703 ArgK Putative periplas 99.0 4.6E-09 9.9E-14 105.9 15.1 149 317-487 50-256 (323)
296 cd04178 Nucleostemin_like Nucl 99.0 8.1E-10 1.8E-14 105.2 8.8 59 315-376 114-172 (172)
297 PF05049 IIGP: Interferon-indu 99.0 1.6E-09 3.5E-14 114.0 11.0 157 317-485 34-218 (376)
298 KOG1144 Translation initiation 99.0 1.2E-09 2.6E-14 119.6 10.1 154 315-484 473-686 (1064)
299 KOG1487 GTP-binding protein DR 99.0 4.3E-10 9.3E-15 110.3 5.9 164 320-488 61-284 (358)
300 PF03308 ArgK: ArgK protein; 99.0 6.5E-10 1.4E-14 110.5 7.2 149 317-486 28-231 (266)
301 KOG1532 GTPase XAB1, interacts 99.0 2.4E-09 5.3E-14 106.0 10.8 168 315-486 16-265 (366)
302 cd01858 NGP_1 NGP-1. Autoanti 99.0 1.7E-09 3.7E-14 101.0 9.0 57 317-376 101-157 (157)
303 KOG0090 Signal recognition par 99.0 5.4E-09 1.2E-13 100.3 11.5 122 319-449 39-162 (238)
304 TIGR00073 hypB hydrogenase acc 99.0 1.5E-08 3.3E-13 99.2 15.0 52 432-483 148-205 (207)
305 KOG4423 GTP-binding protein-li 98.9 1.1E-10 2.3E-15 109.2 -1.2 157 319-485 26-194 (229)
306 COG3276 SelB Selenocysteine-sp 98.9 9.5E-09 2.1E-13 108.3 12.1 153 320-485 2-162 (447)
307 COG4108 PrfC Peptide chain rel 98.9 1.2E-08 2.6E-13 106.9 11.0 119 320-452 14-153 (528)
308 PRK09563 rbgA GTPase YlqF; Rev 98.9 1.4E-08 2.9E-13 104.7 11.0 61 316-379 119-179 (287)
309 PF00735 Septin: Septin; Inte 98.8 1.7E-08 3.7E-13 103.4 11.1 125 319-450 5-160 (281)
310 PF03029 ATP_bind_1: Conserved 98.8 5.3E-09 1.2E-13 104.7 6.7 114 367-485 92-237 (238)
311 TIGR00101 ureG urease accessor 98.8 3.2E-08 7E-13 96.4 11.9 77 398-484 113-195 (199)
312 cd01849 YlqF_related_GTPase Yl 98.8 1.8E-08 4E-13 93.9 9.1 58 316-376 98-155 (155)
313 KOG0077 Vesicle coat complex C 98.8 6.8E-09 1.5E-13 95.7 5.3 154 315-482 17-190 (193)
314 KOG1673 Ras GTPases [General f 98.8 2.4E-08 5.2E-13 91.0 8.7 156 318-485 20-186 (205)
315 TIGR03596 GTPase_YlqF ribosome 98.8 2.3E-08 5E-13 102.4 9.8 60 316-378 116-175 (276)
316 KOG0458 Elongation factor 1 al 98.8 3.1E-08 6.6E-13 107.2 10.6 147 317-476 176-373 (603)
317 cd01855 YqeH YqeH. YqeH is an 98.8 1.8E-08 3.8E-13 97.1 7.8 56 318-376 127-190 (190)
318 COG1161 Predicted GTPases [Gen 98.8 1.8E-08 3.9E-13 105.3 8.3 61 316-379 130-190 (322)
319 cd01856 YlqF YlqF. Proteins o 98.7 4E-08 8.7E-13 93.2 9.5 58 316-376 113-170 (171)
320 PRK10463 hydrogenase nickel in 98.7 4.6E-08 9.9E-13 99.9 10.2 51 433-483 231-287 (290)
321 KOG0465 Mitochondrial elongati 98.7 6E-08 1.3E-12 105.1 11.6 206 320-540 41-276 (721)
322 KOG0461 Selenocysteine-specifi 98.7 1.5E-07 3.2E-12 96.0 12.9 157 317-487 6-195 (522)
323 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 2.6E-08 5.5E-13 91.5 6.5 55 320-377 85-139 (141)
324 KOG3886 GTP-binding protein [S 98.7 1.2E-07 2.6E-12 92.0 11.3 130 319-451 5-135 (295)
325 TIGR00092 GTP-binding protein 98.6 6.6E-08 1.4E-12 101.8 8.3 91 318-409 2-109 (368)
326 KOG2486 Predicted GTPase [Gene 98.6 1.7E-07 3.7E-12 93.5 9.8 155 316-484 134-315 (320)
327 COG5019 CDC3 Septin family pro 98.6 4.6E-07 1E-11 93.9 13.1 126 318-450 23-180 (373)
328 KOG1491 Predicted GTP-binding 98.6 7E-08 1.5E-12 98.5 6.0 91 317-409 19-126 (391)
329 cd01851 GBP Guanylate-binding 98.6 6.5E-07 1.4E-11 88.9 12.4 89 319-409 8-103 (224)
330 KOG0468 U5 snRNP-specific prot 98.5 2.8E-07 6.1E-12 100.5 10.0 113 319-445 129-262 (971)
331 TIGR03597 GTPase_YqeH ribosome 98.5 3.6E-07 7.9E-12 97.0 10.2 61 318-381 154-219 (360)
332 KOG0464 Elongation factor G [T 98.5 3.7E-07 8E-12 94.8 9.7 117 320-450 39-172 (753)
333 cd01859 MJ1464 MJ1464. This f 98.5 3.7E-07 8.1E-12 84.9 8.9 89 391-485 6-96 (156)
334 cd01859 MJ1464 MJ1464. This f 98.5 4.3E-07 9.3E-12 84.5 9.1 57 317-376 100-156 (156)
335 COG5257 GCD11 Translation init 98.5 4.2E-07 9E-12 92.2 9.2 160 316-488 8-205 (415)
336 KOG1547 Septin CDC10 and relat 98.5 2.1E-06 4.5E-11 83.9 13.6 125 319-450 47-202 (336)
337 KOG2655 Septin family protein 98.5 9.3E-07 2E-11 92.2 11.2 125 319-450 22-176 (366)
338 KOG0448 Mitofusin 1 GTPase, in 98.5 1.9E-06 4.1E-11 95.0 13.8 139 315-468 106-309 (749)
339 PRK13796 GTPase YqeH; Provisio 98.5 3.9E-07 8.5E-12 97.0 8.3 59 318-379 160-223 (365)
340 PRK12289 GTPase RsgA; Reviewed 98.4 2E-07 4.3E-12 98.4 5.3 58 320-380 174-238 (352)
341 PRK12288 GTPase RsgA; Reviewed 98.4 2.9E-07 6.2E-12 97.1 6.5 57 321-380 208-271 (347)
342 COG0050 TufB GTPases - transla 98.4 2.7E-06 6E-11 85.4 12.6 120 316-449 10-145 (394)
343 COG0378 HypB Ni2+-binding GTPa 98.4 2.4E-07 5.1E-12 88.4 4.5 50 435-484 145-200 (202)
344 cd01858 NGP_1 NGP-1. Autoanti 98.4 1.3E-06 2.8E-11 81.6 8.8 89 393-485 4-95 (157)
345 TIGR01425 SRP54_euk signal rec 98.4 8.6E-05 1.9E-09 80.1 23.8 146 318-476 100-281 (429)
346 TIGR00157 ribosome small subun 98.4 1.2E-06 2.6E-11 88.2 9.0 86 393-483 32-121 (245)
347 cd01856 YlqF YlqF. Proteins o 98.4 1.1E-06 2.4E-11 83.3 8.3 89 388-484 10-100 (171)
348 KOG1707 Predicted Ras related/ 98.4 3.2E-06 6.8E-11 91.9 12.4 160 313-488 420-586 (625)
349 KOG1954 Endocytosis/signaling 98.4 2.4E-06 5.3E-11 88.0 10.7 125 319-449 59-228 (532)
350 TIGR00157 ribosome small subun 98.3 5.9E-07 1.3E-11 90.4 5.3 56 320-379 122-184 (245)
351 cd01855 YqeH YqeH. YqeH is an 98.3 3E-06 6.5E-11 81.6 9.0 86 392-485 29-125 (190)
352 KOG1424 Predicted GTP-binding 98.2 8.8E-07 1.9E-11 94.9 4.9 58 317-377 313-370 (562)
353 PRK10416 signal recognition pa 98.2 0.00019 4.1E-09 75.0 20.7 151 317-477 113-302 (318)
354 KOG0447 Dynamin-like GTP bindi 98.2 0.00091 2E-08 72.3 25.5 155 290-452 279-499 (980)
355 PF03193 DUF258: Protein of un 98.2 1.1E-06 2.4E-11 82.4 3.1 59 319-380 36-101 (161)
356 TIGR03596 GTPase_YlqF ribosome 98.1 7.6E-06 1.6E-10 83.8 8.8 88 390-485 14-103 (276)
357 COG5258 GTPBP1 GTPase [General 98.1 1.1E-05 2.4E-10 83.7 9.6 154 316-482 115-336 (527)
358 cd01849 YlqF_related_GTPase Yl 98.1 6.8E-06 1.5E-10 76.6 7.5 81 399-484 1-84 (155)
359 smart00010 small_GTPase Small 98.1 1.7E-06 3.6E-11 76.3 3.1 114 319-474 1-115 (124)
360 KOG2485 Conserved ATP/GTP bind 98.1 8.2E-06 1.8E-10 82.9 7.7 64 316-379 141-209 (335)
361 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 8.2E-06 1.8E-10 74.8 7.2 78 391-472 5-84 (141)
362 TIGR00064 ftsY signal recognit 98.1 5.7E-05 1.2E-09 77.2 14.0 102 364-477 153-260 (272)
363 KOG0467 Translation elongation 98.1 1.1E-05 2.5E-10 89.7 9.2 112 319-444 10-136 (887)
364 PRK00098 GTPase RsgA; Reviewed 98.1 4.9E-06 1.1E-10 86.2 6.1 58 319-379 165-229 (298)
365 PRK14974 cell division protein 98.1 2.5E-05 5.5E-10 82.0 11.1 101 365-478 222-323 (336)
366 COG1162 Predicted GTPases [Gen 98.0 4.4E-06 9.6E-11 85.3 4.8 58 320-380 166-230 (301)
367 PRK12289 GTPase RsgA; Reviewed 98.0 1.7E-05 3.6E-10 84.0 8.4 85 393-483 85-173 (352)
368 cd01854 YjeQ_engC YjeQ/EngC. 98.0 7.7E-06 1.7E-10 84.3 5.8 59 319-380 162-227 (287)
369 KOG2484 GTPase [General functi 98.0 4.4E-06 9.6E-11 87.2 3.7 71 304-377 238-308 (435)
370 PRK09563 rbgA GTPase YlqF; Rev 98.0 2.5E-05 5.5E-10 80.5 8.6 87 390-484 17-105 (287)
371 cd03112 CobW_like The function 97.9 4.2E-05 9.2E-10 71.7 9.2 70 366-444 87-158 (158)
372 cd01854 YjeQ_engC YjeQ/EngC. 97.9 3.2E-05 6.8E-10 79.8 7.9 84 394-482 75-161 (287)
373 PRK00098 GTPase RsgA; Reviewed 97.9 3E-05 6.5E-10 80.4 7.5 84 394-482 77-164 (298)
374 COG5192 BMS1 GTP-binding prote 97.8 5.2E-05 1.1E-09 81.8 8.8 111 315-449 66-180 (1077)
375 KOG1143 Predicted translation 97.8 5.6E-05 1.2E-09 78.2 7.8 149 319-480 168-383 (591)
376 KOG2423 Nucleolar GTPase [Gene 97.8 1E-05 2.2E-10 84.2 2.2 61 315-378 304-364 (572)
377 PRK12288 GTPase RsgA; Reviewed 97.7 0.00012 2.6E-09 77.4 9.6 84 395-483 118-206 (347)
378 PRK14722 flhF flagellar biosyn 97.7 0.0018 3.8E-08 69.0 17.9 129 316-448 135-297 (374)
379 PRK12726 flagellar biosynthesi 97.7 0.0012 2.7E-08 69.9 15.6 24 317-340 205-228 (407)
380 KOG3905 Dynein light intermedi 97.7 0.00087 1.9E-08 68.6 13.6 164 314-486 48-291 (473)
381 PRK14721 flhF flagellar biosyn 97.6 0.00082 1.8E-08 72.6 12.9 148 316-476 189-369 (420)
382 PRK12727 flagellar biosynthesi 97.5 0.0011 2.3E-08 73.2 13.6 26 315-340 347-372 (559)
383 PRK00771 signal recognition pa 97.5 0.0013 2.8E-08 71.6 14.0 167 296-476 72-274 (437)
384 KOG0460 Mitochondrial translat 97.5 0.00049 1.1E-08 70.8 9.9 121 316-449 52-187 (449)
385 COG1618 Predicted nucleotide k 97.5 0.005 1.1E-07 57.5 15.5 154 316-485 3-176 (179)
386 PF05783 DLIC: Dynein light in 97.5 0.00085 1.8E-08 73.5 12.4 162 317-486 24-265 (472)
387 TIGR03597 GTPase_YqeH ribosome 97.5 0.00038 8.1E-09 74.1 9.3 83 393-483 59-151 (360)
388 TIGR03348 VI_IcmF type VI secr 97.5 0.00028 6.2E-09 85.8 9.2 121 321-447 114-258 (1169)
389 KOG0463 GTP-binding protein GP 97.5 0.00021 4.5E-09 74.1 6.5 102 367-480 220-353 (641)
390 cd03114 ArgK-like The function 97.4 0.0004 8.6E-09 64.5 7.6 58 365-443 91-148 (148)
391 PRK06995 flhF flagellar biosyn 97.4 0.0041 8.9E-08 68.4 16.3 24 317-340 255-278 (484)
392 PRK14723 flhF flagellar biosyn 97.4 0.003 6.5E-08 72.6 15.6 148 318-476 185-366 (767)
393 PF00503 G-alpha: G-protein al 97.4 0.00085 1.8E-08 72.2 10.6 116 354-485 223-353 (389)
394 KOG3859 Septins (P-loop GTPase 97.4 0.00037 8E-09 69.8 6.6 122 319-448 43-192 (406)
395 KOG0082 G-protein alpha subuni 97.3 0.0016 3.5E-08 68.3 10.9 117 353-485 182-309 (354)
396 PF00448 SRP54: SRP54-type pro 97.3 0.0014 3.1E-08 63.7 9.6 73 365-448 83-156 (196)
397 PRK10867 signal recognition pa 97.3 0.0047 1E-07 67.2 14.4 99 365-476 183-282 (433)
398 PRK11889 flhF flagellar biosyn 97.3 0.0026 5.6E-08 67.9 11.8 23 318-340 241-263 (436)
399 COG3640 CooC CO dehydrogenase 97.2 0.00046 1E-08 67.9 5.8 61 368-445 136-198 (255)
400 cd00066 G-alpha G protein alph 97.2 0.00089 1.9E-08 70.1 7.5 118 353-485 148-276 (317)
401 PRK01889 GTPase RsgA; Reviewed 97.2 0.0015 3.3E-08 69.4 9.0 81 395-481 110-193 (356)
402 PRK13796 GTPase YqeH; Provisio 97.1 0.002 4.2E-08 68.8 9.7 84 393-484 64-158 (365)
403 COG3523 IcmF Type VI protein s 97.1 0.0022 4.9E-08 76.5 10.7 125 321-447 128-271 (1188)
404 KOG0466 Translation initiation 97.1 0.00073 1.6E-08 68.5 5.3 156 317-486 37-242 (466)
405 PRK13695 putative NTPase; Prov 97.1 0.0021 4.6E-08 60.9 8.4 151 319-484 1-172 (174)
406 KOG0469 Elongation factor 2 [T 97.1 0.00091 2E-08 71.7 6.3 112 320-445 21-163 (842)
407 smart00275 G_alpha G protein a 97.1 0.0017 3.6E-08 68.7 8.3 117 353-486 171-299 (342)
408 KOG0705 GTPase-activating prot 97.0 0.0015 3.2E-08 71.0 7.6 153 317-484 29-188 (749)
409 PRK05703 flhF flagellar biosyn 97.0 0.0096 2.1E-07 64.8 14.0 23 318-340 221-243 (424)
410 COG1419 FlhF Flagellar GTP-bin 97.0 0.011 2.4E-07 62.9 13.8 118 318-447 203-353 (407)
411 PRK12724 flagellar biosynthesi 97.0 0.016 3.4E-07 62.6 15.1 23 318-340 223-245 (432)
412 COG0523 Putative GTPases (G3E 97.0 0.004 8.8E-08 65.1 10.1 146 321-476 4-192 (323)
413 PRK01889 GTPase RsgA; Reviewed 96.9 0.0009 2E-08 71.1 4.3 59 318-379 195-260 (356)
414 TIGR00959 ffh signal recogniti 96.8 0.0073 1.6E-07 65.6 10.9 99 365-476 182-281 (428)
415 cd03115 SRP The signal recogni 96.8 0.014 3E-07 55.1 11.3 72 365-447 82-154 (173)
416 PRK11537 putative GTP-binding 96.7 0.0041 8.8E-08 65.1 7.3 73 367-448 92-166 (318)
417 cd04178 Nucleostemin_like Nucl 96.7 0.0026 5.7E-08 60.6 5.4 47 399-449 1-47 (172)
418 PRK12723 flagellar biosynthesi 96.7 0.01 2.2E-07 63.7 10.3 23 318-340 174-196 (388)
419 cd00009 AAA The AAA+ (ATPases 96.6 0.019 4.1E-07 51.0 10.4 25 318-342 19-43 (151)
420 PF02492 cobW: CobW/HypB/UreG, 96.5 0.0043 9.4E-08 59.2 5.8 72 366-448 85-157 (178)
421 KOG0459 Polypeptide release fa 96.5 0.0051 1.1E-07 64.8 6.2 150 315-478 76-279 (501)
422 cd01983 Fer4_NifH The Fer4_Nif 96.4 0.021 4.6E-07 47.2 8.5 72 321-412 2-73 (99)
423 PRK06731 flhF flagellar biosyn 96.4 0.04 8.7E-07 56.3 12.0 120 317-448 74-227 (270)
424 KOG3887 Predicted small GTPase 96.3 0.012 2.5E-07 58.2 7.4 118 319-447 28-150 (347)
425 PF06858 NOG1: Nucleolar GTP-b 96.3 0.0094 2E-07 46.0 5.3 44 396-443 12-58 (58)
426 TIGR02475 CobW cobalamin biosy 96.2 0.031 6.8E-07 59.1 10.9 42 367-409 94-135 (341)
427 PF00004 AAA: ATPase family as 96.2 0.014 3E-07 51.8 6.6 22 321-342 1-22 (132)
428 PF13401 AAA_22: AAA domain; P 96.1 0.0046 9.9E-08 55.1 3.3 23 320-342 6-28 (131)
429 cd02038 FleN-like FleN is a me 96.0 0.012 2.6E-07 53.7 5.8 99 322-444 4-109 (139)
430 KOG0781 Signal recognition par 96.0 0.13 2.7E-06 55.7 13.9 133 312-448 372-546 (587)
431 PF07015 VirC1: VirC1 protein; 96.0 0.1 2.2E-06 51.8 12.4 103 365-478 83-187 (231)
432 KOG0780 Signal recognition par 96.0 0.087 1.9E-06 55.6 12.3 48 364-413 182-229 (483)
433 PRK14086 dnaA chromosomal repl 96.0 0.07 1.5E-06 60.2 12.5 21 321-341 317-337 (617)
434 PF05621 TniB: Bacterial TniB 95.9 0.069 1.5E-06 55.1 11.1 168 297-486 44-232 (302)
435 KOG1534 Putative transcription 95.9 0.019 4.2E-07 55.8 6.4 22 319-340 4-25 (273)
436 cd02042 ParA ParA and ParB of 95.8 0.054 1.2E-06 46.4 8.6 71 321-409 2-73 (104)
437 KOG1533 Predicted GTPase [Gene 95.7 0.0078 1.7E-07 59.4 3.2 21 319-339 3-23 (290)
438 cd00071 GMPK Guanosine monopho 95.7 0.0078 1.7E-07 55.0 3.0 51 321-373 2-53 (137)
439 COG0541 Ffh Signal recognition 95.7 0.084 1.8E-06 56.7 11.0 115 294-411 74-226 (451)
440 PF03266 NTPase_1: NTPase; In 95.7 0.033 7.1E-07 52.9 7.1 22 320-341 1-22 (168)
441 PF09547 Spore_IV_A: Stage IV 95.6 0.091 2E-06 56.3 10.8 159 317-485 16-234 (492)
442 TIGR03263 guanyl_kin guanylate 95.6 0.011 2.5E-07 55.9 3.8 52 320-373 3-54 (180)
443 PRK00411 cdc6 cell division co 95.5 0.54 1.2E-05 50.3 16.8 24 318-341 55-78 (394)
444 KOG2484 GTPase [General functi 95.5 0.021 4.5E-07 60.3 5.6 73 392-468 141-215 (435)
445 COG1116 TauB ABC-type nitrate/ 95.5 0.0091 2E-07 59.6 2.7 26 318-343 29-54 (248)
446 PRK14737 gmk guanylate kinase; 95.4 0.013 2.9E-07 56.5 3.5 53 318-372 4-56 (186)
447 TIGR02928 orc1/cdc6 family rep 95.4 0.5 1.1E-05 49.9 16.0 23 319-341 41-63 (365)
448 PRK00300 gmk guanylate kinase; 95.4 0.012 2.7E-07 57.0 3.3 26 317-342 4-29 (205)
449 PRK14738 gmk guanylate kinase; 95.4 0.013 2.9E-07 57.3 3.4 39 317-355 12-50 (206)
450 PRK04195 replication factor C 95.3 0.3 6.6E-06 54.1 14.4 24 319-342 40-63 (482)
451 PF13207 AAA_17: AAA domain; P 95.3 0.013 2.8E-07 51.5 2.9 22 320-341 1-22 (121)
452 COG1162 Predicted GTPases [Gen 95.1 0.087 1.9E-06 54.3 8.6 86 395-484 77-166 (301)
453 COG3840 ThiQ ABC-type thiamine 95.1 0.014 3.1E-07 55.6 2.7 27 317-343 24-50 (231)
454 COG0194 Gmk Guanylate kinase [ 95.1 0.012 2.7E-07 56.2 2.3 53 317-372 3-55 (191)
455 PF00005 ABC_tran: ABC transpo 95.0 0.018 4E-07 51.8 3.1 27 316-342 9-35 (137)
456 COG0552 FtsY Signal recognitio 95.0 0.051 1.1E-06 56.5 6.6 148 316-477 137-327 (340)
457 KOG0085 G protein subunit Galp 95.0 0.049 1.1E-06 53.6 6.1 40 297-338 20-59 (359)
458 COG1136 SalX ABC-type antimicr 95.0 0.016 3.5E-07 57.4 2.7 27 317-343 30-56 (226)
459 KOG1424 Predicted GTP-binding 94.9 0.043 9.3E-07 59.7 5.8 74 392-469 169-244 (562)
460 PF13555 AAA_29: P-loop contai 94.9 0.022 4.8E-07 44.8 2.6 20 320-339 25-44 (62)
461 cd03111 CpaE_like This protein 94.8 0.061 1.3E-06 46.8 5.7 100 324-441 6-106 (106)
462 cd02036 MinD Bacterial cell di 94.7 0.18 3.8E-06 47.3 9.1 64 367-446 64-128 (179)
463 PRK07261 topology modulation p 94.5 0.026 5.6E-07 53.6 2.8 23 319-341 1-23 (171)
464 KOG2743 Cobalamin synthesis pr 94.5 0.13 2.8E-06 52.6 7.7 79 367-450 147-229 (391)
465 KOG0057 Mitochondrial Fe/S clu 94.5 0.13 2.7E-06 56.7 8.1 25 316-340 376-400 (591)
466 cd03264 ABC_drug_resistance_li 94.5 0.026 5.7E-07 55.0 2.8 26 316-342 24-49 (211)
467 PF13671 AAA_33: AAA domain; P 94.4 0.028 6E-07 50.9 2.6 22 321-342 2-23 (143)
468 PF05673 DUF815: Protein of un 94.4 0.35 7.6E-06 48.6 10.5 25 318-342 52-76 (249)
469 PF13191 AAA_16: AAA ATPase do 94.4 0.043 9.4E-07 51.7 4.0 26 317-342 23-48 (185)
470 COG0563 Adk Adenylate kinase a 94.4 0.026 5.7E-07 54.1 2.5 23 319-341 1-23 (178)
471 cd01130 VirB11-like_ATPase Typ 94.4 0.032 7E-07 53.6 3.1 27 316-342 23-49 (186)
472 PF13521 AAA_28: AAA domain; P 94.4 0.021 4.6E-07 53.3 1.9 22 320-341 1-22 (163)
473 PRK08118 topology modulation p 94.3 0.03 6.5E-07 53.0 2.7 23 320-342 3-25 (167)
474 smart00382 AAA ATPases associa 94.3 0.039 8.4E-07 48.3 3.2 25 319-343 3-27 (148)
475 PRK09270 nucleoside triphospha 94.3 0.083 1.8E-06 52.5 5.9 27 316-342 31-57 (229)
476 PRK10751 molybdopterin-guanine 94.2 0.063 1.4E-06 51.2 4.8 23 319-341 7-29 (173)
477 cd02019 NK Nucleoside/nucleoti 94.2 0.034 7.4E-07 44.4 2.5 21 321-341 2-22 (69)
478 PLN03046 D-glycerate 3-kinase; 94.2 0.33 7.2E-06 52.5 10.4 25 317-341 211-235 (460)
479 COG1161 Predicted GTPases [Gen 94.2 0.08 1.7E-06 55.6 5.8 77 393-477 30-109 (322)
480 PRK10078 ribose 1,5-bisphospho 94.1 0.04 8.6E-07 52.9 3.2 24 319-342 3-26 (186)
481 TIGR00235 udk uridine kinase. 94.1 0.034 7.4E-07 54.3 2.7 26 316-341 4-29 (207)
482 PF02263 GBP: Guanylate-bindin 94.1 0.056 1.2E-06 54.9 4.4 60 319-378 22-86 (260)
483 TIGR00554 panK_bact pantothena 94.1 0.16 3.4E-06 52.5 7.7 25 316-340 60-84 (290)
484 COG0466 Lon ATP-dependent Lon 94.1 0.057 1.2E-06 61.1 4.7 45 295-340 328-372 (782)
485 cd03238 ABC_UvrA The excision 94.1 0.041 8.9E-07 52.6 3.1 26 315-340 18-43 (176)
486 PF04665 Pox_A32: Poxvirus A32 93.9 0.043 9.4E-07 55.0 3.0 31 311-341 6-36 (241)
487 cd03222 ABC_RNaseL_inhibitor T 93.9 0.043 9.3E-07 52.5 2.9 27 316-342 23-49 (177)
488 TIGR00960 3a0501s02 Type II (G 93.9 0.046 1E-06 53.5 3.1 27 316-342 27-53 (216)
489 COG3839 MalK ABC-type sugar tr 93.8 0.039 8.5E-07 58.0 2.7 24 320-343 31-54 (338)
490 PRK05480 uridine/cytidine kina 93.8 0.044 9.6E-07 53.4 2.9 26 316-341 4-29 (209)
491 TIGR02322 phosphon_PhnN phosph 93.8 0.045 9.8E-07 51.8 2.9 23 320-342 3-25 (179)
492 cd03225 ABC_cobalt_CbiO_domain 93.8 0.048 1E-06 53.1 3.1 27 316-342 25-51 (211)
493 PRK03992 proteasome-activating 93.8 1.5 3.2E-05 47.4 14.7 24 318-341 165-188 (389)
494 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.7 0.051 1.1E-06 53.2 3.1 27 316-342 28-54 (218)
495 cd03261 ABC_Org_Solvent_Resist 93.7 0.051 1.1E-06 54.0 3.1 27 316-342 24-50 (235)
496 cd03226 ABC_cobalt_CbiO_domain 93.7 0.052 1.1E-06 52.7 3.1 27 316-342 24-50 (205)
497 COG4525 TauB ABC-type taurine 93.6 0.046 1E-06 52.9 2.6 25 317-341 30-54 (259)
498 cd03110 Fer4_NifH_child This p 93.6 0.42 9.1E-06 45.2 9.2 66 364-446 91-157 (179)
499 PF13238 AAA_18: AAA domain; P 93.6 0.05 1.1E-06 47.9 2.6 21 321-341 1-21 (129)
500 TIGR01166 cbiO cobalt transpor 93.6 0.056 1.2E-06 51.8 3.1 27 316-342 16-42 (190)
No 1
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=100.00 E-value=1.3e-112 Score=890.59 Aligned_cols=452 Identities=44% Similarity=0.683 Sum_probs=417.8
Q ss_pred CCCCcEEEEecCCCCCCcEEEEEEeecccHHHHHHHhcCCCcccccCCCCCCCCCCCcceeeeeeeecCCCCeeeeEEEE
Q 008468 90 GTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAV 169 (564)
Q Consensus 90 ~~~dtI~AlaT~~g~g~~aiaiiRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~ 169 (564)
.+.|||||+|||+| +|||||||+|||+|++|++++|+.. ..|++|+++||+++|.+|+.||+||++
T Consensus 2 ~~~dTI~AiaTa~g--~~aI~IvRiSGp~a~~ia~~i~~~~------------~~~~~r~a~y~~i~d~~~~~iDe~lvl 67 (454)
T COG0486 2 MMFDTIAAIATAPG--EGAIGIVRISGPDALEIAQKLFGGL------------KLPKPRTAHYGHIKDENGEIIDEVLVL 67 (454)
T ss_pred CCCCcEEEEccCCC--CceEEEEEecCHhHHHHHHHHhCCC------------CCCCCcEEEEEEEEcCCCcEeeeeeEE
Confidence 46789999999975 8999999999999999999999741 135789999999999889999999999
Q ss_pred EcCCCCCcchhhhHHHhhhccHHHHHHHHHHHHHcCCcccCCchhHHHHHHcCCcchhHhHHHHHHHhhhhHHHHHHHHH
Q 008468 170 PMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALA 249 (564)
Q Consensus 170 ~f~~P~S~TgEd~vEi~~HG~~~v~~~il~~l~~~g~R~A~pGEFt~Raf~ngkldL~qaEai~~lI~A~t~~~~~~A~~ 249 (564)
||++|+||||||+||||||||++|++.+|+.|++.|+|+|+|||||+|||+||||||+||||++|||+|+|+.+++.|++
T Consensus 68 ~f~aP~SFTGEDvvEi~~HGg~~v~~~iL~~~l~~GaR~AepGEFs~RAFLNgK~DLtqAEai~dLI~A~te~a~r~A~~ 147 (454)
T COG0486 68 YFKAPNSFTGEDVVEIQCHGGPVVVNLILELLLKLGARLAEPGEFSKRAFLNGKLDLTQAEAIADLIDAKTEQAARIALR 147 (454)
T ss_pred EEeCCCCcccccEEEEEcCCCHHHHHHHHHHHHHcCCeecCCCcchHHHHhcCCccHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHhhcCCCC-CCcccHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcEEEEEcCCC
Q 008468 250 GIQGGFSSLVTSVRAKCIELLTEIEARLDFDDE-MPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328 (564)
Q Consensus 250 ~~~G~ls~~i~~lr~~l~~~~a~~Ea~idf~ed-~~~~~~~~l~~~l~~l~~~l~~ll~~~~~~~~~~~~ikI~IvG~~n 328 (564)
+++|.++..+..||+.++++++++|+.|||+|+ ++......+..+++.+.+++.+++..+++++.+++|+||+|+|+||
T Consensus 148 ~l~G~ls~~i~~lr~~li~~~a~vEa~IDfpeedi~~~~~~~i~~~l~~~~~~l~~ll~~~~~g~ilr~G~kvvIiG~PN 227 (454)
T COG0486 148 QLQGALSQLINELREALLELLAQVEANIDFPEEDIEELVLEKIREKLEELIAELDELLATAKQGKILREGLKVVIIGRPN 227 (454)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHheEeCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCceEEEECCCC
Confidence 999999999999999999999999999999986 6666778899999999999999999999999999999999999999
Q ss_pred CChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCC
Q 008468 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAV 408 (564)
Q Consensus 329 vGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s 408 (564)
||||||+|+|+++++++|+++||||||+++..+.++|+++.++||+|++++.+.+|++|++|++..+.+||+++||+|++
T Consensus 228 vGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~ 307 (454)
T COG0486 228 VGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDAS 307 (454)
T ss_pred CcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcccCCcEEEEeccCCCCHHHHHHHHHHHhhccC
Q 008468 409 DGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ 488 (564)
Q Consensus 409 ~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL~~~L~~~l~~~~ 488 (564)
.+.+..+...+.. . ..++|+++|.||+||.........++.. ..+++.+||++|.|++.|.+.|.+.+...
T Consensus 308 ~~~~~~d~~~~~~-~------~~~~~~i~v~NK~DL~~~~~~~~~~~~~-~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~- 378 (454)
T COG0486 308 QPLDKEDLALIEL-L------PKKKPIIVVLNKADLVSKIELESEKLAN-GDAIISISAKTGEGLDALREAIKQLFGKG- 378 (454)
T ss_pred CCCchhhHHHHHh-c------ccCCCEEEEEechhcccccccchhhccC-CCceEEEEecCccCHHHHHHHHHHHHhhc-
Confidence 9877777666551 1 2468999999999998765533221111 23589999999999999999999988755
Q ss_pred CCCCCccccccHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHhcccCCCCchHHHHhhhhcCCCCC
Q 008468 489 IPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564 (564)
Q Consensus 489 ~~~~~~~~~~~~r~~~~l~~~~~~L~~~~~~l~~~l~~el~~~eLr~a~~~L~eitG~~~~e~iL~~IF~~FCiGK 564 (564)
....+..+..+.||...++++.++++++...+..+.+.|+++++||.|++.||+|||+..+||+||.|||+|||||
T Consensus 379 ~~~~~~~~i~~~Rh~~~L~~a~~~l~~a~~~~~~~~~~dl~a~dLr~A~~~LgeItG~~~~edlLd~IFs~FCiGK 454 (454)
T COG0486 379 LGNQEGLFLSNLRHIQLLEQAAEHLEDALQQLELGQPLDLLAEDLRLAQEALGEITGEFVSEDLLDEIFSNFCIGK 454 (454)
T ss_pred ccccccceeecHHHHHHHHHHHHHHHHHHhhhhccCChhhhHHHHHHHHHHHHHhhCCCchHHHHHHHHHhccCCC
Confidence 3344567899999999999999999999999987779999999999999999999999999999999999999999
No 2
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=100.00 E-value=5.8e-102 Score=839.36 Aligned_cols=447 Identities=45% Similarity=0.660 Sum_probs=405.1
Q ss_pred CCCCcEEEEecCCCCCCcEEEEEEeecccHHHHHHHhcCCCcccccCCCCCCCCCCCcceeeeeeeecCCCCeeeeEEEE
Q 008468 90 GTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAV 169 (564)
Q Consensus 90 ~~~dtI~AlaT~~g~g~~aiaiiRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~ 169 (564)
..+|||||+|||+| +|||||||||||+|+++++++|+.+ .|+||+++|++++|. +++|||+|++
T Consensus 2 ~~~dTI~A~aT~~g--~~~i~viRiSG~~a~~~~~~~~~~~-------------~~~~~~~~~~~~~~~-~~~iD~~l~~ 65 (449)
T PRK05291 2 MMNDTIAAIATPPG--RGGIGIIRISGPDALEIAQKLFGKK-------------LPKPRTAHYGHIRDP-GEVIDEVLVL 65 (449)
T ss_pred CCCCcEEEeccCCc--CceEEEEEEEhHHHHHHHHHHhCCC-------------CCCCcEEEEEEEecC-CcccceEEEE
Confidence 45699999999975 8999999999999999999999521 246799999999984 7899999999
Q ss_pred EcCCCCCcchhhhHHHhhhccHHHHHHHHHHHHHcCCcccCCchhHHHHHHcCCcchhHhHHHHHHHhhhhHHHHHHHHH
Q 008468 170 PMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALA 249 (564)
Q Consensus 170 ~f~~P~S~TgEd~vEi~~HG~~~v~~~il~~l~~~g~R~A~pGEFt~Raf~ngkldL~qaEai~~lI~A~t~~~~~~A~~ 249 (564)
||++|+||||||+||||||||++|++++|++|++.|+|+|+|||||||||+||||||+|||||++||+|+|+.|+++|+.
T Consensus 66 ~f~~P~S~TGEd~vEi~~HG~~~v~~~il~~l~~~g~r~A~pGEFt~RAflngk~dL~qaEai~~li~a~t~~~~~~al~ 145 (449)
T PRK05291 66 YFPAPNSFTGEDVVEIQCHGGPAVLNLILELLLALGARLAEPGEFTKRAFLNGKLDLTQAEAIADLIDAKTEAAARLALR 145 (449)
T ss_pred EecCCCCccCCcEEEEECCCCHHHHHHHHHHHHHcCCEEccCccchHHHHhcCCcCHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHhhcCCCCC-CcccHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcEEEEEcCCC
Q 008468 250 GIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEM-PPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328 (564)
Q Consensus 250 ~~~G~ls~~i~~lr~~l~~~~a~~Ea~idf~ed~-~~~~~~~l~~~l~~l~~~l~~ll~~~~~~~~~~~~ikI~IvG~~n 328 (564)
+++|.+++.+..||++|+++++.+|+.|||+||. ++.+.+.+.+++..++++++.++....+++..+++++|+++|++|
T Consensus 146 ~l~G~l~~~~~~~r~~l~~~~a~iea~iDf~ee~~~~~~~~~i~~~i~~l~~~l~~l~~~~~~~~~~~~~~kV~ivG~~n 225 (449)
T PRK05291 146 QLQGALSKLINELREELLELLALVEAAIDFPEEDIEFLSDEKILEKLEELIAELEALLASARQGEILREGLKVVIAGRPN 225 (449)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHheEEccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCC
Confidence 9999999999999999999999999999998854 467788999999999999999999988888889999999999999
Q ss_pred CChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCC
Q 008468 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAV 408 (564)
Q Consensus 329 vGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s 408 (564)
||||||+|+|++.+.++++++++||+|.....+.++|.++.+|||||++++.+.++.+++.++..++..+|++++|+|++
T Consensus 226 vGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s 305 (449)
T PRK05291 226 VGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDAS 305 (449)
T ss_pred CCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCC
Confidence 99999999999998888999999999999999999999999999999998888889888888888899999999999999
Q ss_pred CCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcccCCcEEEEeccCCCCHHHHHHHHHHHhhccC
Q 008468 409 DGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ 488 (564)
Q Consensus 409 ~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL~~~L~~~l~~~~ 488 (564)
++.+..+.+.|.. ..+.|+++|+||+|+.+..... .....+++++||++|.|+++|+++|.+.+....
T Consensus 306 ~~~s~~~~~~l~~--------~~~~piiiV~NK~DL~~~~~~~----~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~~~ 373 (449)
T PRK05291 306 EPLTEEDDEILEE--------LKDKPVIVVLNKADLTGEIDLE----EENGKPVIRISAKTGEGIDELREAIKELAFGGF 373 (449)
T ss_pred CCCChhHHHHHHh--------cCCCCcEEEEEhhhccccchhh----hccCCceEEEEeeCCCCHHHHHHHHHHHHhhcc
Confidence 9887776555543 2368999999999997543321 122357899999999999999999999875321
Q ss_pred CCCCCccccccHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHhcccCCCCchHHHHhhhhcCCCCC
Q 008468 489 IPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564 (564)
Q Consensus 489 ~~~~~~~~~~~~r~~~~l~~~~~~L~~~~~~l~~~l~~el~~~eLr~a~~~L~eitG~~~~e~iL~~IF~~FCiGK 564 (564)
....+..+..+.||++.++++.++|.++.+.+..+++.|+++++||.|+..|++|||++.+|||||+||++|||||
T Consensus 374 ~~~~~~~~~~~~R~~~~l~~a~~~l~~~~~~~~~~~~~~~~a~~l~~a~~~l~~i~G~~~~e~iLd~iF~~FCiGK 449 (449)
T PRK05291 374 GGNQEGVFLTNARHLEALERALEHLERALEGLESGLPLELLAEDLRLALEALGEITGEVTSEDLLDRIFSSFCIGK 449 (449)
T ss_pred ccccccceehHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCCCCC
Confidence 1122345778899999999999999999999888889999999999999999999999999999999999999999
No 3
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=100.00 E-value=8e-99 Score=810.92 Aligned_cols=438 Identities=35% Similarity=0.564 Sum_probs=387.6
Q ss_pred ecCCCCCCcEEEEEEeecccHHHHHHHhcCCCcccccCCCCCCCCCCCcceeeeeeeecCCCCeeeeEEEEEcCCCCCcc
Q 008468 99 VTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAVPMLAPRSYT 178 (564)
Q Consensus 99 aT~~g~g~~aiaiiRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~P~S~T 178 (564)
|||+| +|||||||||||+|+++++++|+.+ ..|.+|+++|++++|+++++|||||++||++|+|||
T Consensus 1 aT~~g--~~~i~viRiSG~~a~~i~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~P~S~T 66 (442)
T TIGR00450 1 ATPPF--NSAIHIIRLSGPDSLSILKKITNKL------------NTASGMRIQYGHIIDSNNKCKDDELLFKFVAPNSYT 66 (442)
T ss_pred CCCCC--CceEEEEEeehHHHHHHHHHHhCCC------------CCCCCcEEEEEEEECCCCCEeeeEEEEEEcCCCCcc
Confidence 68875 8999999999999999999999421 124678899999998888999999999999999999
Q ss_pred hhhhHHHhhhccHHHHHHHHHHHHHcCCcccCCchhHHHHHHcCCcchhHhHHHHHHHhhhhHHHHHHHHHhhcchhhHH
Q 008468 179 REDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAGIQGGFSSL 258 (564)
Q Consensus 179 gEd~vEi~~HG~~~v~~~il~~l~~~g~R~A~pGEFt~Raf~ngkldL~qaEai~~lI~A~t~~~~~~A~~~~~G~ls~~ 258 (564)
|||+||||||||++|++++|++|++.|+|+|+|||||||||+||||||+|||||+|||+|+|+.++++|+.+++|.+++.
T Consensus 67 GEDvvEi~~HGg~~v~~~il~~l~~~g~R~A~pGEFT~RAflNGk~DL~qaEav~dlI~a~t~~~~~~A~~~l~G~ls~~ 146 (442)
T TIGR00450 67 GEDVIEIQCHGSMLIVQEILQLCLKSGARLAQPGEFTQRAFLNGKMDLTQAEAINELILAPNNKVKDIALNKLAGELDQK 146 (442)
T ss_pred cccEEEEECCCCHHHHHHHHHHHHHcCCeEcCCchhhHHHHhcCCccHHHHHHHHHHHhCCCHHHHHHHHHhcCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcEEEEEcCCCCChhHHHHHh
Q 008468 259 VTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAW 338 (564)
Q Consensus 259 i~~lr~~l~~~~a~~Ea~idf~ed~~~~~~~~l~~~l~~l~~~l~~ll~~~~~~~~~~~~ikI~IvG~~nvGKSSLlN~L 338 (564)
+..||++|+++++++|+.|||+||..+. ..+..++..+..+++.++... .++..+++++|+++|+||||||||+|+|
T Consensus 147 ~~~~r~~l~~~~a~iea~iDf~ee~~~~--~~~~~~l~~~~~~l~~ll~~~-~~~~~~~g~kVvIvG~~nvGKSSLiN~L 223 (442)
T TIGR00450 147 IEAIRKSLLQLLAQVEVNIDYEEDDDEQ--DSLNQLLLSIIAELKDILNSY-KLEKLDDGFKLAIVGSPNVGKSSLLNAL 223 (442)
T ss_pred HHHHHHHHHHHHHHeeEECCcCCCCccH--HHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCEEEEECCCCCcHHHHHHHH
Confidence 9999999999999999999999864332 478888999999999999988 5577889999999999999999999999
Q ss_pred hcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHH
Q 008468 339 SKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSEL 418 (564)
Q Consensus 339 ~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~ 418 (564)
++.++++++++|+||++.....+.++|.++.+|||||++++.+.++..++.++..+++.+|++++|+|++++.+.++. +
T Consensus 224 ~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~ 302 (442)
T TIGR00450 224 LKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-L 302 (442)
T ss_pred hCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-H
Confidence 999888999999999999999999999999999999999888888888888888999999999999999988776654 3
Q ss_pred HHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcc-cCCcEEEEeccCCCCHHHHHHHHHHHhhccCC--CC-CCc
Q 008468 419 LNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGN-SFNDHVFTCAVTGQGIQDLETAIMKIVGLHQI--PA-GGR 494 (564)
Q Consensus 419 l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~-~~~~~i~iSAktg~GI~eL~~~L~~~l~~~~~--~~-~~~ 494 (564)
+..+. ..++|+++|+||+|+.... .+.+.+ ...+++.+||++ .||+++++.+.+.+...-. .. .+.
T Consensus 303 l~~~~------~~~~piIlV~NK~Dl~~~~---~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~~~~~~~~~~~ 372 (442)
T TIGR00450 303 IIDLN------KSKKPFILVLNKIDLKINS---LEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAFYSKERVELDD 372 (442)
T ss_pred HHHHh------hCCCCEEEEEECccCCCcc---hhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHHhccccccccc
Confidence 33322 1368999999999996541 122222 234689999998 5888888888876643210 01 234
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHhcccCCCCchHHHHhhhhcCCCCC
Q 008468 495 RWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564 (564)
Q Consensus 495 ~~~~~~r~~~~l~~~~~~L~~~~~~l~~~l~~el~~~eLr~a~~~L~eitG~~~~e~iL~~IF~~FCiGK 564 (564)
.+..+.||+++++++.++|.++.+.+..+++.|+++++||.|+..|++|||++.+|||||+||++|||||
T Consensus 373 ~~~~~~r~~~~l~~a~~~l~~~~~~~~~~~~~el~a~~l~~a~~~l~~itG~~~~ediLd~iFs~FCiGK 442 (442)
T TIGR00450 373 YLISSWQAMILLEKAIAQLQQFLSKLDRQLFLDMLVFHLREAINCLGQVTGEVVTEDVLDEIFSNFCLGK 442 (442)
T ss_pred ceEhHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCCCC
Confidence 5778899999999999999999999988889999999999999999999999999999999999999999
No 4
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-80 Score=642.07 Aligned_cols=467 Identities=39% Similarity=0.506 Sum_probs=382.7
Q ss_pred cEEEEecCCCCCCcEEEEEEeecccHHHHHHHhcCCCcccccCCCCCCCCCCCcceeeeeeeecCCCCeeeeEEEEEcCC
Q 008468 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAVPMLA 173 (564)
Q Consensus 94 tI~AlaT~~g~g~~aiaiiRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~ 173 (564)
||+|++||.|. ++||||+|+|||++..++++++.+......+..+...|. ++ -.+++..|.+|.++|+++.+||++
T Consensus 43 Ti~alst~~~~-~~aiai~R~sG~~a~kv~r~L~~s~~v~~~~~~~~~~l~--~~-~~r~~~~~e~~v~~D~~l~l~~~g 118 (531)
T KOG1191|consen 43 TIFALSTGIGL-TSAIAIFRISGPDATKVARRLLRSVMVPKRRNAGLRALY--NP-EVRVYVVDEDGVTRDRALGLYFLG 118 (531)
T ss_pred eEEEeecCCCC-CcceeEEEecCchHHHHHHHhccccccCCCCcccccccc--Ch-hhcccccCCCCcchhhhhhccccC
Confidence 99999999874 999999999999999999999975321111111111111 11 123334455677999999999999
Q ss_pred CCCcchhhhHHHhhhccHHHHHHHHHHHH---HcCCcccCCchhHHHHHHcCCcchhHhHHHHHHHhhhhHHHHHHHHHh
Q 008468 174 PRSYTREDVVELQCHGSEVCLRRVLRACL---EAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALAG 250 (564)
Q Consensus 174 P~S~TgEd~vEi~~HG~~~v~~~il~~l~---~~g~R~A~pGEFt~Raf~ngkldL~qaEai~~lI~A~t~~~~~~A~~~ 250 (564)
|.||||||++|||||||.+++..++.++. ..|+|+|+|||||+|||+|||+||+|+|.+.++|.+.|+.|+..|+.+
T Consensus 119 p~sFtgeD~~el~~hgs~avv~~~l~a~~~sg~~~ir~a~~geft~Raf~ngk~~Ltq~eg~~~lI~a~t~~q~~~Al~~ 198 (531)
T KOG1191|consen 119 PQSFTGEDVVELQTHGSSAVVVGVLTALGASGIPGIRLAEPGEFTRRAFLNGKLDLTQAEGIIDLIVAETESQRRAALDE 198 (531)
T ss_pred CceeeeeeeEEEEEecCccchhhHHHHhhhccCCCccccCchhhhhhhhhccccchhhhcChhhhhhhhhHhhhhhhhhh
Confidence 99999999999999999999999999998 458999999999999999999999999999999999999999999999
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccHH--HHHHHHHHHHHHHHHHHHHhhhhhhhcCCcEEEEEcCCC
Q 008468 251 IQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLN--LVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPN 328 (564)
Q Consensus 251 ~~G~ls~~i~~lr~~l~~~~a~~Ea~idf~ed~~~~~~~--~l~~~l~~l~~~l~~ll~~~~~~~~~~~~ikI~IvG~~n 328 (564)
+.|+.......||..+++.++.+|+.+||.|+.+..+.+ .+......|+.++...+...+..+.++.|++|+|+|+||
T Consensus 199 v~g~~~~l~~~~r~~lIe~~a~l~a~idf~e~~~l~~~~t~~~~~~~~~l~d~v~s~l~~~~~~e~lq~gl~iaIvGrPN 278 (531)
T KOG1191|consen 199 VAGEALALCFGWRKILIEALAGLEARIDFEEERPLEEIETVEIFIESLSLLDDVLSHLNKADEIERLQSGLQIAIVGRPN 278 (531)
T ss_pred hcchhHHhhhhHHHHHHHHHhccceeechhhcCchhhccchhhhhHHHHHHHHHHHHHHhhhhHHHhhcCCeEEEEcCCC
Confidence 999999999999999999999999999999876544433 233344557788888899999999999999999999999
Q ss_pred CChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCC-chhHHHHhhhhhhhhhhhcCcEEEEEecC
Q 008468 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRE-TDDIVEKIGVERSEAVALGADVIIMTVSA 407 (564)
Q Consensus 329 vGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~-~~~~ie~~~i~~~~~~l~~aD~vl~ViD~ 407 (564)
||||||+|+|..+++++|++.+|||||.++..++++|.++.|+||+|+++ ..+.+|++|+++++..+..||++++|+|+
T Consensus 279 vGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda 358 (531)
T KOG1191|consen 279 VGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDA 358 (531)
T ss_pred CCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecc
Confidence 99999999999999999999999999999999999999999999999997 88899999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHhcccc------CCCCCCEEEEEecCCCCCCCc-chh-------hhhcccCCcEEEEeccCCCCH
Q 008468 408 VDGWTSEDSELLNRIQSNKKS------TESSTPMILVINKIDCAPSAS-NEW-------NKVGNSFNDHVFTCAVTGQGI 473 (564)
Q Consensus 408 s~~~s~~~~~~l~~l~~~~~~------~~~~~PvIvV~NK~DL~~~~~-~~~-------~~l~~~~~~~i~iSAktg~GI 473 (564)
...++.++..+.+.+...... .....|++++.||+|+...-. ... ......+....++||++++|+
T Consensus 359 ~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~ 438 (531)
T KOG1191|consen 359 EESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGC 438 (531)
T ss_pred cccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccceEEEeeechhhhH
Confidence 766666665544444333221 123478999999999987621 111 111124455677999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCccc-cccHHHHHHHHHHHH-HHHHHHHHHhhcCChhhHHHHHHHHHHHHhcccCCCCchH
Q 008468 474 QDLETAIMKIVGLHQIPAGGRRW-AVNQRQCEQLMRTKE-ALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEE 551 (564)
Q Consensus 474 ~eL~~~L~~~l~~~~~~~~~~~~-~~~~r~~~~l~~~~~-~L~~~~~~l~~~l~~el~~~eLr~a~~~L~eitG~~~~e~ 551 (564)
+.|.+.+.+.+.....+.....+ ....|..+.++.+.. .+.+.........+.+++.++||.|.+.+++++|...+|+
T Consensus 439 ~~L~~all~~~~~~~~~~~s~~~t~~~~r~~~~~r~~~~~~l~~~~~~k~~~~D~~la~~~lR~a~~~i~r~tggggte~ 518 (531)
T KOG1191|consen 439 ERLSTALLNIVERLVVSPHSAPPTLSQKRIKELLRTCAAPELERRFLAKQLKEDIDLAGEPLRLAQRSIARITGGGGTEE 518 (531)
T ss_pred HHHHHHHHHHHHHhhcCCCCCchhhcchhHHHHHHhhhhhhHHHHHHhhhcccchhhccchHHHHHhhhcccCCCCchhh
Confidence 99999999987543332222233 344555555555554 4666666666667899999999999999999999999999
Q ss_pred HHHhhhhcCCCCC
Q 008468 552 VLSNIFGKFCIGK 564 (564)
Q Consensus 552 iL~~IF~~FCiGK 564 (564)
+++.||++|||||
T Consensus 519 vls~ifqkfcigK 531 (531)
T KOG1191|consen 519 VLSSIFQKFCIGK 531 (531)
T ss_pred HHHHHHHHhhcCC
Confidence 9999999999999
No 5
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP. TrmE is homologous to the tetrahydrofolate-binding domain of N,N-dimethylglycine oxidase and indeed binds formyl-tetrahydrofolate. TrmE actively participates in the formylation reaction of uridine and regulates the ensuing hydrogenation reaction of a Schiff's base intermediate. This B chain is the N-terminal portion of the protein consisting of five beta-strands and three alpha helices and is necessary for mediating dimer formation within the protein []. ; PDB: 1XZQ_B 1XZP_A 3GEE_A 3GEI_B 3GEH_A.
Probab=100.00 E-value=5.2e-47 Score=330.29 Aligned_cols=114 Identities=52% Similarity=0.869 Sum_probs=101.6
Q ss_pred cEEEEecCCCCCCcEEEEEEeecccHHHHHHHhcCCCcccccCCCCCCCCCCCcceeeeeeeecCCCCeeeeEEEEEcCC
Q 008468 94 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAVPMLA 173 (564)
Q Consensus 94 tI~AlaT~~g~g~~aiaiiRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~ 173 (564)
||||+|||+| +|||||||||||+|+++++++|.. .+++++++|++++|.++++|||+|++||++
T Consensus 1 TI~AlaT~~g--~~aiaiIRiSG~~a~~i~~~~~~~--------------~~~~r~~~~~~~~~~~~~~iDe~lv~~f~~ 64 (114)
T PF10396_consen 1 TIAALATPPG--RSAIAIIRISGPDALEIAQKLFGK--------------SPKPRRAYYGTIYDEDGEPIDEVLVLYFPA 64 (114)
T ss_dssp -EEEE-S-SS--C-SEEEEEEESTTHHHHHHTTESS--------------STTTTEEEEEEEECSSTCEEEEEEEEEEBT
T ss_pred CEEEECCCCC--CceEEEEEeEcHHHHHHHHHHhCc--------------cccCcEEEEEEEEcCCCccccceeEEeecC
Confidence 8999999975 899999999999999999999932 236799999999998899999999999999
Q ss_pred CCCcchhhhHHHhhhccHHHHHHHHHHHHHcCCcccCCchhHHHHHHcCC
Q 008468 174 PRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGR 223 (564)
Q Consensus 174 P~S~TgEd~vEi~~HG~~~v~~~il~~l~~~g~R~A~pGEFt~Raf~ngk 223 (564)
|+||||||+||||||||++++++||+.|++.|+|+|+|||||||||+|||
T Consensus 65 P~SyTGEd~vEi~~HGg~~v~~~il~~l~~~G~R~A~pGEFT~RAflNGK 114 (114)
T PF10396_consen 65 PRSYTGEDVVEIHCHGGPAVVRRILEALLKAGARLAEPGEFTRRAFLNGK 114 (114)
T ss_dssp TCSSSSSEEEEEEEESSHHHHHHHHHHHHHTT-EE--TTHHHHHHHHTTS
T ss_pred CCcccCCCEEEEEcCCCHHHHHHHHHHHHHcCceEcCCchhhHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999998
No 6
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.96 E-value=3.2e-28 Score=255.90 Aligned_cols=261 Identities=22% Similarity=0.283 Sum_probs=197.1
Q ss_pred HHHHHHHHHHcCCcccCCchhHHHHHHcCCcchhHhHHHHHHHhhhhH-HHHHHHHHhhcchhhHHHHHHHHHHHHHHHH
Q 008468 194 LRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSV-AAADAALAGIQGGFSSLVTSVRAKCIELLTE 272 (564)
Q Consensus 194 ~~~il~~l~~~g~R~A~pGEFt~Raf~ngkldL~qaEai~~lI~A~t~-~~~~~A~~~~~G~ls~~i~~lr~~l~~~~a~ 272 (564)
..+-|+.. .|++.-++-.-....|. -+|+|. ...+.|+.+++|.+++.+..|+. + +.
T Consensus 80 q~~nl~~~--~~~~v~Dr~~lil~iF~---------------~ra~t~e~klqv~la~l~~~l~r~~~~~~~-l----~~ 137 (351)
T TIGR03156 80 QERNLEKA--LGCRVIDRTGLILDIFA---------------QRARTHEGKLQVELAQLKYLLPRLVGGWTH-L----SR 137 (351)
T ss_pred HHHHHHHH--hCCcccchHHHHHHHHH---------------HhccChHHHHHHHHHhccchhhhhhhhHHH-H----Hh
Confidence 34444443 36666666665555543 356665 55678999999999999988877 5 55
Q ss_pred HHHhhcCC--CC-CCcccHHHHHHHHHHHHHHHHHHHHHhhhhhhhc---CCcEEEEEcCCCCChhHHHHHhhcCCccee
Q 008468 273 IEARLDFD--DE-MPPLNLNLVMDKIHAMSQDVENALETANYDKLLQ---SGLQIAIVGRPNVGKSSLLNAWSKSERAIV 346 (564)
Q Consensus 273 ~Ea~idf~--ed-~~~~~~~~l~~~l~~l~~~l~~ll~~~~~~~~~~---~~ikI~IvG~~nvGKSSLlN~L~~~~~~~v 346 (564)
+++.++|. +| ..+.+++.+.+++..++++++.+...+..++..+ ..++|+|+|+||||||||+|+|++.+ .++
T Consensus 138 ~~~~i~~~g~gE~~~~~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~-~~v 216 (351)
T TIGR03156 138 QGGGIGTRGPGETQLETDRRLIRERIAQLKKELEKVEKQRERQRRRRKRADVPTVALVGYTNAGKSTLFNALTGAD-VYA 216 (351)
T ss_pred hcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcEEEEECCCCCCHHHHHHHHhCCc-eee
Confidence 66667764 44 2356788899999999999999998877666555 55999999999999999999999987 578
Q ss_pred ccccCeeEEEEEEEEEE-CCeeeEEEeCCCCC-C-chhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHH
Q 008468 347 TEIAGTTRDVIEASVTV-CGVPVTLLDTAGIR-E-TDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQ 423 (564)
Q Consensus 347 s~~~gtT~d~~~~~~~~-~g~~i~LiDTpG~~-~-~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~ 423 (564)
++++++|+|.....+.+ ++.++.+|||||+. + +.+.++.+ ..+...+.+||++++|+|++++.+..+...|..+.
T Consensus 217 ~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f--~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L 294 (351)
T TIGR03156 217 ADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAF--RATLEEVREADLLLHVVDASDPDREEQIEAVEKVL 294 (351)
T ss_pred ccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHH--HHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHH
Confidence 89999999999999998 67899999999983 3 55555654 34455688999999999999987776655554444
Q ss_pred hccccCCCCCCEEEEEecCCCCCCCcchhhhhcccCCcEEEEeccCCCCHHHHHHHHHHH
Q 008468 424 SNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKI 483 (564)
Q Consensus 424 ~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL~~~L~~~ 483 (564)
.... ..++|+++|+||+|+.+..... .+.....+++++||++|.|+++|++.|.+.
T Consensus 295 ~~l~--~~~~piIlV~NK~Dl~~~~~v~--~~~~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 295 EELG--AEDIPQLLVYNKIDLLDEPRIE--RLEEGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred HHhc--cCCCCEEEEEEeecCCChHhHH--HHHhCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 3321 2368999999999997543221 122223468999999999999999998764
No 7
>PRK11058 GTPase HflX; Provisional
Probab=99.93 E-value=3.2e-24 Score=230.67 Aligned_cols=293 Identities=21% Similarity=0.279 Sum_probs=198.7
Q ss_pred CeeeeEEEEE-cCCCCCcchhh-hHHHhh----hccHH---------HHHHHHHHHHHcCCcccCCchhHHHHHHc----
Q 008468 161 NVVDEVLAVP-MLAPRSYTRED-VVELQC----HGSEV---------CLRRVLRACLEAGATLAQPGEFTLRAFLN---- 221 (564)
Q Consensus 161 ~~iD~~l~~~-f~~P~S~TgEd-~vEi~~----HG~~~---------v~~~il~~l~~~g~R~A~pGEFt~Raf~n---- 221 (564)
++++.+.... -+.|++|-|.- +-|+.. ++-.. ...+-|+..+ |++.-++-.-....|..
T Consensus 40 ~v~~~~~q~~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~lsp~q~~nle~~~--~~~v~DR~~lil~IF~~rA~t 117 (426)
T PRK11058 40 EALQVITGSRKAPHPKYFVGEGKAVEIAEAVKATGASVVLFDHALSPAQERNLERLC--ECRVIDRTGLILDIFAQRART 117 (426)
T ss_pred EEEEEEEEecCCCCCCeeecccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHH--CCeEecchhHHHHHHHHhcCC
Confidence 4455444433 46677776654 333322 22211 2455555543 78888888888888862
Q ss_pred --CC--cchhHhHHHH-HHHhhhhHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHH
Q 008468 222 --GR--LDLSQAENVE-KLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIH 296 (564)
Q Consensus 222 --gk--ldL~qaEai~-~lI~A~t~~~~~~A~~~~~G~ls~~i~~lr~~l~~~~a~~Ea~idf~ed~~~~~~~~l~~~l~ 296 (564)
|| +.|+|.++.. +|...++...+ ..|+.+. .+..|..++ .+++.+.+++.
T Consensus 118 ~e~klqvelA~l~y~~prl~~~~~~l~~------~~gg~g~------------~g~ge~~~e-------~d~r~i~~ri~ 172 (426)
T PRK11058 118 HEGKLQVELAQLRHLATRLVRGWTHLER------QKGGIGL------------RGPGETQLE-------TDRRLLRNRIV 172 (426)
T ss_pred hHHHHHHHHHhhhhhhhhhhccccchhh------hcCCCCC------------CCCChhHhH-------HHHHHHHHHHH
Confidence 33 6677777665 55555544332 2232211 112233332 66788899999
Q ss_pred HHHHHHHHHHHHhhhhhhhcCC---cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe-eeEEEe
Q 008468 297 AMSQDVENALETANYDKLLQSG---LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV-PVTLLD 372 (564)
Q Consensus 297 ~l~~~l~~ll~~~~~~~~~~~~---ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~-~i~LiD 372 (564)
.+.++++++......++..+.+ ++|+|+|+||||||||+|+|++.++. +++.+++|+|.....+.+.+. ++.+||
T Consensus 173 ~l~~~L~~~~~~r~~~r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~D 251 (426)
T PRK11058 173 QILSRLERVEKQREQGRRARIKADVPTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLAD 251 (426)
T ss_pred HHHHHHHHHHHhHHHHHHHhhhcCCCEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEe
Confidence 9999999988776555444433 69999999999999999999998865 789999999999888888765 889999
Q ss_pred CCCCCC--chhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcc
Q 008468 373 TAGIRE--TDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450 (564)
Q Consensus 373 TpG~~~--~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~ 450 (564)
|||+.. +.+.++.+ ..+...+..||++++|+|++++.+..+...+..++.... ..+.|+++|+||+|+.+....
T Consensus 252 TaG~~r~lp~~lve~f--~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~--~~~~pvIiV~NKiDL~~~~~~ 327 (426)
T PRK11058 252 TVGFIRHLPHDLVAAF--KATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEID--AHEIPTLLVMNKIDMLDDFEP 327 (426)
T ss_pred cCcccccCCHHHHHHH--HHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhc--cCCCCEEEEEEcccCCCchhH
Confidence 999843 45666654 345566899999999999999877776655555444321 236899999999999753221
Q ss_pred hhhhhcccCCcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 451 EWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 451 ~~~~l~~~~~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
...........++++||++|.|+++|+++|.+.+.
T Consensus 328 ~~~~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 328 RIDRDEENKPIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred HHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 11111112223588999999999999999998874
No 8
>COG1159 Era GTPase [General function prediction only]
Probab=99.92 E-value=4.3e-24 Score=213.44 Aligned_cols=163 Identities=30% Similarity=0.439 Sum_probs=141.4
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCc
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGAD 399 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD 399 (564)
-|+|+|.||||||||+|+|+|.+.+++++.|.|||..+.+.++.++.++.++||||+..............+...+..+|
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvD 87 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVD 87 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCc
Confidence 49999999999999999999999999999999999999999999999999999999998877777777888889999999
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcc-hh--hhhc--ccCCcEEEEeccCCCCHH
Q 008468 400 VIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN-EW--NKVG--NSFNDHVFTCAVTGQGIQ 474 (564)
Q Consensus 400 ~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~-~~--~~l~--~~~~~~i~iSAktg~GI~ 474 (564)
+++||+|+.+++...+...++.+.. .+.|+++++||+|....... .. +.+. ..|..++++||++|.|++
T Consensus 88 lilfvvd~~~~~~~~d~~il~~lk~------~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~ 161 (298)
T COG1159 88 LILFVVDADEGWGPGDEFILEQLKK------TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVD 161 (298)
T ss_pred EEEEEEeccccCCccHHHHHHHHhh------cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHH
Confidence 9999999999888888777777654 25799999999999877652 21 2222 245689999999999999
Q ss_pred HHHHHHHHHhhccC
Q 008468 475 DLETAIMKIVGLHQ 488 (564)
Q Consensus 475 eL~~~L~~~l~~~~ 488 (564)
.|.+.+.+.+....
T Consensus 162 ~L~~~i~~~Lpeg~ 175 (298)
T COG1159 162 TLLEIIKEYLPEGP 175 (298)
T ss_pred HHHHHHHHhCCCCC
Confidence 99999999986544
No 9
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.91 E-value=3.8e-24 Score=224.62 Aligned_cols=160 Identities=34% Similarity=0.506 Sum_probs=139.4
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCch-hHHHHhhhhhhhhhhhc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD-DIVEKIGVERSEAVALG 397 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~-~~ie~~~i~~~~~~l~~ 397 (564)
..|+|+|.||||||||+|+|+++..++|+++||+|||.......+.+.++.++||+|+.... +.+.....+++..++..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999999999999999999999998543 55666667888889999
Q ss_pred CcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcccCCcEEEEeccCCCCHHHHH
Q 008468 398 ADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLE 477 (564)
Q Consensus 398 aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL~ 477 (564)
||++|||+|...+.+..|..+.+.+... ++|+|+|+||+|-........+-+.-.+.++++|||..|.|+.+|+
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr~~------~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLl 157 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILRRS------KKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLL 157 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhc------CCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHH
Confidence 9999999999999999998888877642 6899999999997643332223344456789999999999999999
Q ss_pred HHHHHHh
Q 008468 478 TAIMKIV 484 (564)
Q Consensus 478 ~~L~~~l 484 (564)
+.+.+.+
T Consensus 158 d~v~~~l 164 (444)
T COG1160 158 DAVLELL 164 (444)
T ss_pred HHHHhhc
Confidence 9999987
No 10
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.91 E-value=9.8e-24 Score=221.53 Aligned_cols=164 Identities=39% Similarity=0.569 Sum_probs=142.5
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCc---hhHHHHhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRET---DDIVEKIGVERSE 392 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~---~~~ie~~~i~~~~ 392 (564)
.+++||+|+|.||||||||+|+|+++++.++++.+|||+|.+...+++++..+.++||+|++.- .+.+|.+.+.++.
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 3579999999999999999999999999999999999999999999999999999999999843 3446788889999
Q ss_pred hhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh----hhhcc-----cCCcEE
Q 008468 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW----NKVGN-----SFNDHV 463 (564)
Q Consensus 393 ~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~----~~l~~-----~~~~~i 463 (564)
..+..+|++++|+|++.+.+.++.++...+... ++++++|+||+|+........ +++.. .+.+++
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~------g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~ 329 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDLRIAGLIEEA------GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIV 329 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc------CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEE
Confidence 999999999999999999999999888877654 789999999999987632222 22222 346899
Q ss_pred EEeccCCCCHHHHHHHHHHHhh
Q 008468 464 FTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 464 ~iSAktg~GI~eL~~~L~~~l~ 485 (564)
.+||++|.|+.++++.+.+...
T Consensus 330 ~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 330 FISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred EEEecCCCChHHHHHHHHHHHH
Confidence 9999999999999999988764
No 11
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=4e-24 Score=198.88 Aligned_cols=153 Identities=31% Similarity=0.399 Sum_probs=115.6
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGA 398 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~a 398 (564)
++|+++|.||||||||+|+|+|.+ ..++++||+|.+...+.+.+++..+.++||||+.......+.+.+.+........
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~ 79 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKP 79 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCC
Confidence 589999999999999999999998 5689999999999999999999999999999987644333333344444335789
Q ss_pred cEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcc-cCCcEEEEeccCCCCHHH
Q 008468 399 DVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGN-SFNDHVFTCAVTGQGIQD 475 (564)
Q Consensus 399 D~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~-~~~~~i~iSAktg~GI~e 475 (564)
|++++|+|+++ ...+..+..++.+. ++|+++|+||+|+........ +.+.+ ...+++++||++|.|+++
T Consensus 80 D~ii~VvDa~~--l~r~l~l~~ql~e~------g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 80 DLIIVVVDATN--LERNLYLTLQLLEL------GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SEEEEEEEGGG--HHHHHHHHHHHHHT------TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CEEEEECCCCC--HHHHHHHHHHHHHc------CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 99999999987 23444555555543 789999999999876554432 34443 236899999999999999
Q ss_pred HHHHH
Q 008468 476 LETAI 480 (564)
Q Consensus 476 L~~~L 480 (564)
|+++|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 99875
No 12
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.90 E-value=8.6e-23 Score=207.92 Aligned_cols=161 Identities=27% Similarity=0.330 Sum_probs=123.3
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCc
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGAD 399 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD 399 (564)
+|+++|+||||||||+|+|++.+.+++++.++||++.+......++.++.+|||||+.+............+..++..+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 68999999999999999999999888999999999987777677778899999999976533333333445566789999
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcc--cCCcEEEEeccCCCCHHH
Q 008468 400 VIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGN--SFNDHVFTCAVTGQGIQD 475 (564)
Q Consensus 400 ~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~--~~~~~i~iSAktg~GI~e 475 (564)
++++|+|+++..+.. ...+..+.. .+.|+++|+||+|+........ ..+.. .+.+++++||++|.|+++
T Consensus 82 vvl~VvD~~~~~~~~-~~i~~~l~~------~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~ 154 (270)
T TIGR00436 82 LILFVVDSDQWNGDG-EFVLTKLQN------LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSF 154 (270)
T ss_pred EEEEEEECCCCCchH-HHHHHHHHh------cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence 999999999865543 223333322 3689999999999974332211 22222 234789999999999999
Q ss_pred HHHHHHHHhhcc
Q 008468 476 LETAIMKIVGLH 487 (564)
Q Consensus 476 L~~~L~~~l~~~ 487 (564)
|++.|.+.+...
T Consensus 155 L~~~l~~~l~~~ 166 (270)
T TIGR00436 155 LAAFIEVHLPEG 166 (270)
T ss_pred HHHHHHHhCCCC
Confidence 999999988543
No 13
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.90 E-value=2.5e-22 Score=195.41 Aligned_cols=192 Identities=27% Similarity=0.365 Sum_probs=140.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhhhhc--CC-cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEE
Q 008468 286 LNLNLVMDKIHAMSQDVENALETANYDKLLQ--SG-LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVT 362 (564)
Q Consensus 286 ~~~~~l~~~l~~l~~~l~~ll~~~~~~~~~~--~~-ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~ 362 (564)
.|...+.+++..++++++.+.+.+...+..+ ++ ++|+|+|++|||||||+|+|++... .+.+.+++|.+.....+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iiG~~g~GKStLl~~l~~~~~-~~~~~~~~t~~~~~~~~~ 84 (204)
T cd01878 6 TDRRLIRERIAKLRRELEKVKKQRELQRRRRKRSGIPTVALVGYTNAGKSTLFNALTGADV-YAEDQLFATLDPTTRRLR 84 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhcCCCeEEEECCCCCCHHHHHHHHhcchh-ccCCccceeccceeEEEE
Confidence 4567788899999999999888766555443 44 7999999999999999999999874 355667777777777777
Q ss_pred ECCe-eeEEEeCCCCCCc--hhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEE
Q 008468 363 VCGV-PVTLLDTAGIRET--DDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVI 439 (564)
Q Consensus 363 ~~g~-~i~LiDTpG~~~~--~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~ 439 (564)
+++. .+.+|||||+.+. ....+.+ ......+..+|++++|+|++++.+..+...|..+.... ...+.|+++|+
T Consensus 85 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~--~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~--~~~~~~viiV~ 160 (204)
T cd01878 85 LPDGREVLLTDTVGFIRDLPHQLVEAF--RSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKEL--GAEDIPMILVL 160 (204)
T ss_pred ecCCceEEEeCCCccccCCCHHHHHHH--HHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHc--CcCCCCEEEEE
Confidence 7665 8999999998542 2222221 22233467899999999999887776655454444332 12368999999
Q ss_pred ecCCCCCCCcchhhhhcccCCcEEEEeccCCCCHHHHHHHHHHH
Q 008468 440 NKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKI 483 (564)
Q Consensus 440 NK~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL~~~L~~~ 483 (564)
||+|+.+..... ..+.....+++++||++|.|+++++++|.+.
T Consensus 161 NK~Dl~~~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 161 NKIDLLDDEELE-ERLEAGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred EccccCChHHHH-HHhhcCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 999997654332 2223344679999999999999999998764
No 14
>PRK15494 era GTPase Era; Provisional
Probab=99.89 E-value=4.9e-22 Score=208.58 Aligned_cols=166 Identities=27% Similarity=0.354 Sum_probs=125.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
..++|+++|++|||||||+|+|++...+++++.++||++.....+..++.++.+|||||+.+............+..++.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~ 130 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLH 130 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhh
Confidence 34799999999999999999999999888889999999988888889999999999999965433333333444555688
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhccc--CCcEEEEeccCCCCH
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGNS--FNDHVFTCAVTGQGI 473 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~~--~~~~i~iSAktg~GI 473 (564)
.+|++++|+|.++.....+..++..+.. .+.|.|+|+||+|+........ +.+... +..++++||++|.|+
T Consensus 131 ~aDvil~VvD~~~s~~~~~~~il~~l~~------~~~p~IlViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg~gv 204 (339)
T PRK15494 131 SADLVLLIIDSLKSFDDITHNILDKLRS------LNIVPIFLLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSGKNI 204 (339)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHh------cCCCEEEEEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCccCH
Confidence 9999999999887655444444444432 2467889999999965421111 222222 256899999999999
Q ss_pred HHHHHHHHHHhhccC
Q 008468 474 QDLETAIMKIVGLHQ 488 (564)
Q Consensus 474 ~eL~~~L~~~l~~~~ 488 (564)
++++++|.+.+....
T Consensus 205 ~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 205 DGLLEYITSKAKISP 219 (339)
T ss_pred HHHHHHHHHhCCCCC
Confidence 999999999886443
No 15
>COG2262 HflX GTPases [General function prediction only]
Probab=99.88 E-value=1.8e-21 Score=201.75 Aligned_cols=260 Identities=23% Similarity=0.297 Sum_probs=188.1
Q ss_pred HHHHHHHHHHcCCcccCCchhHHHHHHc------CC--cchhHhHHHH-HHHhhhhHHHHHHHHHhhcchhhHHHHHHHH
Q 008468 194 LRRVLRACLEAGATLAQPGEFTLRAFLN------GR--LDLSQAENVE-KLISAKSVAAADAALAGIQGGFSSLVTSVRA 264 (564)
Q Consensus 194 ~~~il~~l~~~g~R~A~pGEFt~Raf~n------gk--ldL~qaEai~-~lI~A~t~~~~~~A~~~~~G~ls~~i~~lr~ 264 (564)
..+.|+.. .|++..++-...+..|.. || +.|+|.++.. ++...++... ++.|+.+-
T Consensus 83 Q~~NLe~~--l~~kVIDRt~LILdIFa~RA~S~EgkLQVeLAqL~Y~lpRl~~~~~~l~------~~GggiG~------- 147 (411)
T COG2262 83 QLRNLEKE--LGVKVIDRTQLILDIFAQRARSREGKLQVELAQLRYELPRLVGSGSHLS------RLGGGIGF------- 147 (411)
T ss_pred HHHHHHHH--HCCEEEehHhHHHHHHHHHhccchhhhhhhHHhhhhhhhHhHhhhhhcc------cccCCCCC-------
Confidence 44444443 389999999888888863 55 7788888776 6665555533 11222111
Q ss_pred HHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhhhh--hhc-CCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 265 KCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDK--LLQ-SGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 265 ~l~~~~a~~Ea~idf~ed~~~~~~~~l~~~l~~l~~~l~~ll~~~~~~~--~~~-~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
++..|..+ +.|++.+..++..++++++.+.+.....+ +.+ .-+.|+++|.+|+|||||+|+|++.
T Consensus 148 -----rGpGE~~l-------E~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~ 215 (411)
T COG2262 148 -----RGPGETQL-------ETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGA 215 (411)
T ss_pred -----CCCCchHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhcc
Confidence 11222233 26788899999999999998876654332 222 3378999999999999999999988
Q ss_pred CcceeccccCeeEEEEEEEEEEC-CeeeEEEeCCCCCC--chhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHH
Q 008468 342 ERAIVTEIAGTTRDVIEASVTVC-GVPVTLLDTAGIRE--TDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSEL 418 (564)
Q Consensus 342 ~~~~vs~~~gtT~d~~~~~~~~~-g~~i~LiDTpG~~~--~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~ 418 (564)
.. .+.+..++|.|.....+.+. |.++.+.||.|+.+ +...++.+..+. .....||++++|+|++++......+.
T Consensus 216 ~~-~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTL--EE~~~aDlllhVVDaSdp~~~~~~~~ 292 (411)
T COG2262 216 DV-YVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTL--EEVKEADLLLHVVDASDPEILEKLEA 292 (411)
T ss_pred Ce-eccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHH--HHhhcCCEEEEEeecCChhHHHHHHH
Confidence 74 57888999999999998886 68999999999974 567788775443 34789999999999999966666665
Q ss_pred HHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcccCCcEEEEeccCCCCHHHHHHHHHHHhhc
Q 008468 419 LNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 419 l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
...++.... ..+.|+|+|+||+|+....... ..+....+..+.+||++|.|++.|++.|.+.+..
T Consensus 293 v~~vL~el~--~~~~p~i~v~NKiD~~~~~~~~-~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 293 VEDVLAEIG--ADEIPIILVLNKIDLLEDEEIL-AELERGSPNPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred HHHHHHHcC--CCCCCEEEEEecccccCchhhh-hhhhhcCCCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 555555432 3458999999999987655411 1222222358999999999999999999998863
No 16
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.88 E-value=1.5e-21 Score=179.76 Aligned_cols=156 Identities=45% Similarity=0.718 Sum_probs=127.9
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhc
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALG 397 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~ 397 (564)
|++|+++|++|+|||||+|++++...+.+++.+++|.+.....+.+++.++.+|||||+.+.....+.....+....+..
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 57999999999999999999999887777889999999888888888999999999999876655555555566667889
Q ss_pred CcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcccCCcEEEEeccCCCCHHHHH
Q 008468 398 ADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLE 477 (564)
Q Consensus 398 aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL~ 477 (564)
+|++++|+|++++.+..+.+.+.. ..+.|+++|+||+|+.+.... .......+++++||+++.|+++++
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~~~~--------~~~~~vi~v~nK~D~~~~~~~---~~~~~~~~~~~~Sa~~~~~v~~l~ 149 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILEL--------PADKPIIVVLNKSDLLPDSEL---LSLLAGKPIIAISAKTGEGLDELK 149 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHh--------hcCCCEEEEEEchhcCCcccc---ccccCCCceEEEECCCCCCHHHHH
Confidence 999999999998777776655543 236899999999999765433 112234679999999999999999
Q ss_pred HHHHHHh
Q 008468 478 TAIMKIV 484 (564)
Q Consensus 478 ~~L~~~l 484 (564)
++|.+.+
T Consensus 150 ~~l~~~~ 156 (157)
T cd04164 150 EALLELA 156 (157)
T ss_pred HHHHHhh
Confidence 9998754
No 17
>PRK00089 era GTPase Era; Reviewed
Probab=99.87 E-value=7.6e-21 Score=195.61 Aligned_cols=162 Identities=30% Similarity=0.390 Sum_probs=126.4
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGA 398 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~a 398 (564)
-.|+|+|+||||||||+|+|++.+.+++++.+.||++........++.++.++||||+.+............+...+..+
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~ 85 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDV 85 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcC
Confidence 35999999999999999999999988899999999998877777677899999999998765444443344556678899
Q ss_pred cEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCC-Ccchh--hhhcc--cCCcEEEEeccCCCCH
Q 008468 399 DVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS-ASNEW--NKVGN--SFNDHVFTCAVTGQGI 473 (564)
Q Consensus 399 D~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~-~~~~~--~~l~~--~~~~~i~iSAktg~GI 473 (564)
|++++|+|++++.+..+...+..+.. .+.|+++|+||+|+... ..... +.+.+ .+.+++++||++|.|+
T Consensus 86 D~il~vvd~~~~~~~~~~~i~~~l~~------~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv 159 (292)
T PRK00089 86 DLVLFVVDADEKIGPGDEFILEKLKK------VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV 159 (292)
T ss_pred CEEEEEEeCCCCCChhHHHHHHHHhh------cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence 99999999998666555555444432 25799999999999743 22111 33333 3467999999999999
Q ss_pred HHHHHHHHHHhhc
Q 008468 474 QDLETAIMKIVGL 486 (564)
Q Consensus 474 ~eL~~~L~~~l~~ 486 (564)
+++++.|.+.+..
T Consensus 160 ~~L~~~L~~~l~~ 172 (292)
T PRK00089 160 DELLDVIAKYLPE 172 (292)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999998754
No 18
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=4.2e-21 Score=176.89 Aligned_cols=155 Identities=37% Similarity=0.530 Sum_probs=119.7
Q ss_pred EEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEE
Q 008468 322 AIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVI 401 (564)
Q Consensus 322 ~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~v 401 (564)
+++|.+|||||||+|+|++.....++..+++|++.......+++..+.+|||||+.+................+..+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 57999999999999999998766778899999999888888999999999999998765422222222334567889999
Q ss_pred EEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcc-cCCcEEEEeccCCCCHHHHHHHH
Q 008468 402 IMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGN-SFNDHVFTCAVTGQGIQDLETAI 480 (564)
Q Consensus 402 l~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~-~~~~~i~iSAktg~GI~eL~~~L 480 (564)
++|+|+.++.+..+...+..+.. .+.|+++|+||+|+....... ..+.. ...+++++|+++|.|+++++++|
T Consensus 81 i~v~d~~~~~~~~~~~~~~~~~~------~~~piiiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 153 (157)
T cd01894 81 LFVVDGREGLTPADEEIAKYLRK------SKKPVILVVNKVDNIKEEDEA-AEFYSLGFGEPIPISAEHGRGIGDLLDAI 153 (157)
T ss_pred EEEEeccccCCccHHHHHHHHHh------cCCCEEEEEECcccCChHHHH-HHHHhcCCCCeEEEecccCCCHHHHHHHH
Confidence 99999988776666555554433 258999999999997654331 22222 22478999999999999999999
Q ss_pred HHH
Q 008468 481 MKI 483 (564)
Q Consensus 481 ~~~ 483 (564)
.+.
T Consensus 154 ~~~ 156 (157)
T cd01894 154 LEL 156 (157)
T ss_pred Hhh
Confidence 865
No 19
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=3.4e-21 Score=210.98 Aligned_cols=163 Identities=28% Similarity=0.430 Sum_probs=130.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCch---hHHHHhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD---DIVEKIGVERSEA 393 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~---~~ie~~~i~~~~~ 393 (564)
..++|+|+|.+|||||||+|+|++.++..++++++||++.....+.+++.++.||||||++... ...+.+...++..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 4589999999999999999999999887889999999999988899999999999999986421 1133444444556
Q ss_pred hhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh------hhhcc-cCCcEEEEe
Q 008468 394 VALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW------NKVGN-SFNDHVFTC 466 (564)
Q Consensus 394 ~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~------~~l~~-~~~~~i~iS 466 (564)
+++.+|++++|+|++++.+.++...+..+.. .++|+|+|+||+|+........ +.+.. .+.+++++|
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~------~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQRVLSMVIE------AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH------cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 6899999999999999998888876665543 3689999999999975332111 11222 346889999
Q ss_pred ccCCCCHHHHHHHHHHHhh
Q 008468 467 AVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 467 Aktg~GI~eL~~~L~~~l~ 485 (564)
|++|.|++++++.+.+.+.
T Consensus 364 Ak~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 364 AKTGRAVDKLVPALETALE 382 (472)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999998775
No 20
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=5.2e-21 Score=209.53 Aligned_cols=163 Identities=28% Similarity=0.376 Sum_probs=127.5
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhc
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALG 397 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~ 397 (564)
..+|+|+|.+|||||||+|+|++...+.+.+.+++|++.....+.+++..+.+|||||+......+.......+..++..
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 117 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRT 117 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHh
Confidence 37999999999999999999999887788999999999999999999999999999998743222222223345567899
Q ss_pred CcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcccCCcEEEEeccCCCCHHHHH
Q 008468 398 ADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLE 477 (564)
Q Consensus 398 aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL~ 477 (564)
||++|+|+|++++.+..+..+...+.. .++|+++|+||+|+........+.+...+...++|||++|.|+++++
T Consensus 118 aD~il~VvD~~~~~s~~~~~i~~~l~~------~~~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~gi~eL~ 191 (472)
T PRK03003 118 ADAVLFVVDATVGATATDEAVARVLRR------SGKPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHGRGVGDLL 191 (472)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCCCCcHHHH
Confidence 999999999999887766655555543 36899999999998653222212223334456899999999999999
Q ss_pred HHHHHHhhc
Q 008468 478 TAIMKIVGL 486 (564)
Q Consensus 478 ~~L~~~l~~ 486 (564)
++|.+.+..
T Consensus 192 ~~i~~~l~~ 200 (472)
T PRK03003 192 DAVLAALPE 200 (472)
T ss_pred HHHHhhccc
Confidence 999987743
No 21
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.86 E-value=6.1e-21 Score=185.56 Aligned_cols=167 Identities=15% Similarity=0.147 Sum_probs=115.7
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+|+|.+|||||||++++++.++.. ...|.++.+.....+.+++ ..+.+|||||...+...............+.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~-~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~ 79 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPE-EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLR 79 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCc-ccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhc
Confidence 589999999999999999999987642 2234444455555566777 4567999999865422111111122334578
Q ss_pred cCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhc--ccCCcEEEEeccCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVG--NSFNDHVFTCAVTG 470 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~--~~~~~~i~iSAktg 470 (564)
.+|++++|||++++.+++....|. .+.........+.|+++|+||+|+........ +.+. ....+++++||++|
T Consensus 80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 159 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYN 159 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence 999999999999988777665443 34332211235689999999999965433222 2222 23468999999999
Q ss_pred CCHHHHHHHHHHHhhc
Q 008468 471 QGIQDLETAIMKIVGL 486 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~~ 486 (564)
.|++++|+.+.+.+..
T Consensus 160 ~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 160 WHILLLFKELLISATT 175 (198)
T ss_pred CCHHHHHHHHHHHhhc
Confidence 9999999999987753
No 22
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.86 E-value=6.2e-21 Score=177.54 Aligned_cols=154 Identities=19% Similarity=0.227 Sum_probs=114.8
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|++|||||||++++....+ +..+.+|+.+.....+.+++. .+.+|||||..++..... .+++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~--------~~~~ 71 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRD--------LYIK 71 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHH--------HHhh
Confidence 7999999999999999999998764 456667776666666777775 456899999977655432 3478
Q ss_pred cCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhccc-CCcEEEEeccCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGNS-FNDHVFTCAVTGQ 471 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~~-~~~~i~iSAktg~ 471 (564)
.+|++++|+|+++..++++...|. .+.... ...+.|+++|+||+|+........ ..+... ..+++++||++|.
T Consensus 72 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 149 (163)
T cd04136 72 NGQGFVLVYSITSQSSFNDLQDLREQILRVK--DTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKI 149 (163)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCC
Confidence 999999999999887777664443 333321 134789999999999976443322 223222 2579999999999
Q ss_pred CHHHHHHHHHHHh
Q 008468 472 GIQDLETAIMKIV 484 (564)
Q Consensus 472 GI~eL~~~L~~~l 484 (564)
|++++++++.+.+
T Consensus 150 ~v~~l~~~l~~~~ 162 (163)
T cd04136 150 NVDEVFADLVRQI 162 (163)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999998753
No 23
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.86 E-value=8.7e-21 Score=185.07 Aligned_cols=155 Identities=21% Similarity=0.259 Sum_probs=118.6
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceecccc-CeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIA-GTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~-gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
+.|+++|..|||||||++++....+. ..+. ..+.++....+.+++ ..+.+|||+|...+...+ ..++
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~--~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~--------~~y~ 70 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFC--EACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSIT--------SAYY 70 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCC--CcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHH--------HHHh
Confidence 36899999999999999999988753 4444 334566667788877 567899999997765543 3458
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhccc--CCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGNS--FNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~~--~~~~i~iSAktg 470 (564)
+++|++|+|||++++.++++...|....... ...+.|+++|+||+|+........ +++.+. ...++++||++|
T Consensus 71 ~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~--~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg 148 (202)
T cd04120 71 RSAKGIILVYDITKKETFDDLPKWMKMIDKY--ASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDN 148 (202)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHh--CCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCC
Confidence 9999999999999998888886665544322 235689999999999976544332 334332 356999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 008468 471 QGIQDLETAIMKIVG 485 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~ 485 (564)
.||+++|++|.+.+.
T Consensus 149 ~gV~e~F~~l~~~~~ 163 (202)
T cd04120 149 FNVDEIFLKLVDDIL 163 (202)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
No 24
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=7.9e-21 Score=205.69 Aligned_cols=163 Identities=39% Similarity=0.560 Sum_probs=132.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCch---hHHHHhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD---DIVEKIGVERSEA 393 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~---~~ie~~~i~~~~~ 393 (564)
..++|+++|.+|+|||||+|+|++.++.+++++++||++.....+.+++..+.+|||||++... +.++.+...++..
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 4589999999999999999999999888889999999999988888999999999999997543 3356666666777
Q ss_pred hhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCC-CCcchh--hhhcc-----cCCcEEEE
Q 008468 394 VALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP-SASNEW--NKVGN-----SFNDHVFT 465 (564)
Q Consensus 394 ~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~-~~~~~~--~~l~~-----~~~~~i~i 465 (564)
+++.+|++++|+|++++.+.++.+.+..+.. .++|+|+|+||+|+.. ...... +.+.. .+.+++++
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 324 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDLRIAGLILE------AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFI 324 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHHHHHHHHHH------cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEE
Confidence 8999999999999999988888777666544 2689999999999972 111111 22221 23689999
Q ss_pred eccCCCCHHHHHHHHHHHhh
Q 008468 466 CAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 466 SAktg~GI~eL~~~L~~~l~ 485 (564)
||++|.|++++++++.+.+.
T Consensus 325 SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 325 SALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988764
No 25
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.86 E-value=5e-21 Score=179.59 Aligned_cols=162 Identities=20% Similarity=0.183 Sum_probs=114.8
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe-eeEEEeCCCCCCchhHHHHhhhhhhhhhhhcC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV-PVTLLDTAGIRETDDIVEKIGVERSEAVALGA 398 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~-~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~a 398 (564)
+|+++|++|||||||+|+|.+.+. .++..+++|.+.....+.+++. .+.+|||||+.+.....+.+ .......+..+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~-~~~~~~~~~~~ 79 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGL-GHRFLRHIERT 79 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCc-hHHHHHHHHhC
Confidence 589999999999999999998764 5677888888877777777776 89999999985322111111 11122335679
Q ss_pred cEEEEEecCCCC-CChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhccc--CCcEEEEeccCCCCH
Q 008468 399 DVIIMTVSAVDG-WTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGNS--FNDHVFTCAVTGQGI 473 (564)
Q Consensus 399 D~vl~ViD~s~~-~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~~--~~~~i~iSAktg~GI 473 (564)
|++++|+|++++ .+.++...|............++|+++|+||+|+.+...... ..+... ..+++++||++|.|+
T Consensus 80 d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred CEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 999999999987 566655444432222111123689999999999976544322 222222 467999999999999
Q ss_pred HHHHHHHHHH
Q 008468 474 QDLETAIMKI 483 (564)
Q Consensus 474 ~eL~~~L~~~ 483 (564)
++++++|.+.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 26
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.86 E-value=1.3e-20 Score=175.97 Aligned_cols=160 Identities=39% Similarity=0.569 Sum_probs=122.9
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCch---hHHHHhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD---DIVEKIGVERSEAV 394 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~---~~ie~~~i~~~~~~ 394 (564)
.++|+++|.+|+|||||+|+|++.......+.+++|++.....+..++..+.+|||||+.+.. ...+.+...+....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 479999999999999999999998876778889999998888888899999999999987542 22233333344556
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCC--cchh--hhhccc-----CCcEEEE
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA--SNEW--NKVGNS-----FNDHVFT 465 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~--~~~~--~~l~~~-----~~~~i~i 465 (564)
+..+|++++|+|++++.+......+..+.. .+.|+++|+||+|+.+.. .... +.+.+. ..+++++
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLRIAGLILE------EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHHHHHHHHh------cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 789999999999999877766555544432 258999999999997653 2111 222221 2579999
Q ss_pred eccCCCCHHHHHHHHHHH
Q 008468 466 CAVTGQGIQDLETAIMKI 483 (564)
Q Consensus 466 SAktg~GI~eL~~~L~~~ 483 (564)
||+++.|++++++++.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999998764
No 27
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=1.4e-20 Score=204.19 Aligned_cols=163 Identities=39% Similarity=0.543 Sum_probs=133.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCch---hHHHHhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD---DIVEKIGVERSEA 393 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~---~~ie~~~i~~~~~ 393 (564)
..++|+|+|.+|+|||||+|+|++.+..++++.++||++.....+..++..+.+|||||++... ..++.+...++..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 4699999999999999999999999988899999999999988888899999999999987542 2355555666777
Q ss_pred hhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcc-----cCCcEEEEe
Q 008468 394 VALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGN-----SFNDHVFTC 466 (564)
Q Consensus 394 ~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~-----~~~~~i~iS 466 (564)
++..+|++|+|+|++++.+.++..++..+... ++|+++|+||+|+.+...... +.+.. ...+++++|
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~------~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDLRIAGLALEA------GRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc------CCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 88999999999999999888888776665442 689999999999974322211 22221 236899999
Q ss_pred ccCCCCHHHHHHHHHHHhh
Q 008468 467 AVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 467 Aktg~GI~eL~~~L~~~l~ 485 (564)
|++|.|++++++.+.+...
T Consensus 326 A~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999988664
No 28
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=1.1e-20 Score=204.46 Aligned_cols=160 Identities=38% Similarity=0.508 Sum_probs=130.1
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCc
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGAD 399 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD 399 (564)
+|+|+|++|||||||+|+|++...+++.+++|+|++.....+.+++..+.+|||||+....+.+.......+..++..+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 58999999999999999999998888999999999999999999999999999999865443333333455666789999
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcccCCcEEEEeccCCCCHHHHHHH
Q 008468 400 VIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETA 479 (564)
Q Consensus 400 ~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL~~~ 479 (564)
++++|+|+.++.+..+..+...+.. .++|+++|+||+|+........+.....+.+++++||++|.|++++++.
T Consensus 81 ~vl~vvD~~~~~~~~d~~i~~~l~~------~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~ 154 (429)
T TIGR03594 81 VILFVVDGREGLTPEDEEIAKWLRK------SGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDA 154 (429)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHH------hCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHHHHH
Confidence 9999999999888877766665543 2689999999999876543222222223457999999999999999999
Q ss_pred HHHHhh
Q 008468 480 IMKIVG 485 (564)
Q Consensus 480 L~~~l~ 485 (564)
+.+.+.
T Consensus 155 i~~~l~ 160 (429)
T TIGR03594 155 ILELLP 160 (429)
T ss_pred HHHhcC
Confidence 998773
No 29
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.85 E-value=1.6e-20 Score=173.98 Aligned_cols=154 Identities=23% Similarity=0.269 Sum_probs=113.2
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCee--eEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVP--VTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~--i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|++|||||||+|+|++..+ +..+.+|+.+.....+.+++.. +.+|||||..++...++ .+++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~--------~~~~ 71 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD--------QYMR 71 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHH--------HHHh
Confidence 6899999999999999999998764 3566666666666667777644 67899999877655433 3578
Q ss_pred cCcEEEEEecCCCCCChhHHHHH-HHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcc-cCCcEEEEeccCCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELL-NRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGN-SFNDHVFTCAVTGQG 472 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l-~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~-~~~~~i~iSAktg~G 472 (564)
.+|++++|+|+++..++.+...| ..+.... ...+.|+++|+||+|+........ ..+.. ...+++++||++|.|
T Consensus 72 ~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~--~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 149 (162)
T cd04138 72 TGEGFLCVFAINSRKSFEDIHTYREQIKRVK--DSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQG 149 (162)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCC
Confidence 89999999999987666665433 3333321 124689999999999976322211 22222 235799999999999
Q ss_pred HHHHHHHHHHHh
Q 008468 473 IQDLETAIMKIV 484 (564)
Q Consensus 473 I~eL~~~L~~~l 484 (564)
+++++++|.+.+
T Consensus 150 i~~l~~~l~~~~ 161 (162)
T cd04138 150 VEEAFYTLVREI 161 (162)
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 30
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.85 E-value=1.3e-20 Score=176.15 Aligned_cols=154 Identities=21% Similarity=0.225 Sum_probs=116.0
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCee--eEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVP--VTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~--i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|.+|||||||+++++...+ +..+++|+.+.....+.+++.. +.+|||||...+..... .+++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~--------~~~~ 71 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRD--------LYMK 71 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHH--------HHHh
Confidence 7999999999999999999997653 4667777777666677777654 56899999977665533 3588
Q ss_pred cCcEEEEEecCCCCCChhHHHHH-HHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELL-NRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTGQ 471 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l-~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg~ 471 (564)
.+|++++|+|.++..++++...| ..+.... ...+.|+++|+||+|+........ +.+.+ ...+++++||++|.
T Consensus 72 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 149 (164)
T cd04175 72 NGQGFVLVYSITAQSTFNDLQDLREQILRVK--DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKI 149 (164)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCC
Confidence 99999999999987777665433 3343321 235789999999999976543332 23333 23579999999999
Q ss_pred CHHHHHHHHHHHh
Q 008468 472 GIQDLETAIMKIV 484 (564)
Q Consensus 472 GI~eL~~~L~~~l 484 (564)
|++++++++.+.+
T Consensus 150 ~v~~~~~~l~~~l 162 (164)
T cd04175 150 NVNEIFYDLVRQI 162 (164)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 31
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.85 E-value=1.6e-20 Score=175.22 Aligned_cols=155 Identities=19% Similarity=0.225 Sum_probs=114.9
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+|+|++|||||||+|++.+..+ ...+.+|+.+.....+.+++. .+.+|||||..++....+ .+++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~--------~~~~ 70 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHF--VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRD--------QYMR 70 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHH--------HHHh
Confidence 4899999999999999999998774 355666666666666666664 567899999987765433 3478
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTGQ 471 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg~ 471 (564)
.+|++++|+|++++.+++....|.. +.... ...+.|+++|+||+|+........ ..+.+ ...+++++||++|.
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (164)
T smart00173 71 TGEGFLLVYSITDRQSFEEIKKFREQILRVK--DRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERV 148 (164)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCC
Confidence 8999999999998877766644433 33321 223689999999999976543322 22222 23679999999999
Q ss_pred CHHHHHHHHHHHhh
Q 008468 472 GIQDLETAIMKIVG 485 (564)
Q Consensus 472 GI~eL~~~L~~~l~ 485 (564)
|+++++++|.+.+.
T Consensus 149 ~i~~l~~~l~~~~~ 162 (164)
T smart00173 149 NVDEAFYDLVREIR 162 (164)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988653
No 32
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.85 E-value=2e-20 Score=174.23 Aligned_cols=154 Identities=23% Similarity=0.255 Sum_probs=115.2
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|++|||||||++++++..+ ++.+++++.+.....+.+++. .+.+|||||..++....+ .+++
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--------~~~~ 72 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMRE--------QYMR 72 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHH--------HHHh
Confidence 7999999999999999999998764 567777777766666677774 577899999877655433 4478
Q ss_pred cCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTGQ 471 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg~ 471 (564)
.+|++++|+|+++..++.....|. .+.... ...+.|+++|+||+|+........ .++.. ...+++++||++|.
T Consensus 73 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 150 (164)
T cd04145 73 TGEGFLLVFSVTDRGSFEEVDKFHTQILRVK--DRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRL 150 (164)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCC
Confidence 999999999999877766654333 233221 234689999999999976543222 22222 23579999999999
Q ss_pred CHHHHHHHHHHHh
Q 008468 472 GIQDLETAIMKIV 484 (564)
Q Consensus 472 GI~eL~~~L~~~l 484 (564)
|++++++.|.+.+
T Consensus 151 ~i~~l~~~l~~~~ 163 (164)
T cd04145 151 NVDKAFHDLVRVI 163 (164)
T ss_pred CHHHHHHHHHHhh
Confidence 9999999998764
No 33
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=1.2e-20 Score=197.10 Aligned_cols=165 Identities=22% Similarity=0.214 Sum_probs=123.6
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEE-CCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTV-CGVPVTLLDTAGIRETDDIVEKIGVERSEAVALG 397 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~-~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~ 397 (564)
..|+|+|.||||||||+|+|++... .++++|+||++.....+.+ ++.++.+|||||+.+.......++ ......++.
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg-~~flrhie~ 236 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLG-HRFLKHIER 236 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHH-HHHHHHhhh
Confidence 5799999999999999999998764 5799999999999999888 567899999999975332211121 123345788
Q ss_pred CcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCCCCH
Q 008468 398 ADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTGQGI 473 (564)
Q Consensus 398 aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg~GI 473 (564)
+|++++|+|+++..+.++.+.|...+..+.....++|+++|+||+|+.+...... +.+.. ...+++++||+++.|+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 9999999999987667776666554433222224689999999999976543221 22222 2257999999999999
Q ss_pred HHHHHHHHHHhh
Q 008468 474 QDLETAIMKIVG 485 (564)
Q Consensus 474 ~eL~~~L~~~l~ 485 (564)
++++++|.+.+.
T Consensus 317 ~eL~~~L~~~l~ 328 (335)
T PRK12299 317 DELLRALWELLE 328 (335)
T ss_pred HHHHHHHHHHHH
Confidence 999999998775
No 34
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.85 E-value=2.5e-20 Score=183.34 Aligned_cols=161 Identities=19% Similarity=0.217 Sum_probs=116.5
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC---eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG---VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g---~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
+||+++|++|||||||+|+|.+..+. ....+..+.+.....+.+++ ..+.||||||...+..... .++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~-~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~--------~~~ 71 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFG-KSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLD--------KYI 71 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHH--------HHh
Confidence 58999999999999999999988753 22334445677667777753 5778999999865544433 448
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
+.+|++|+|||++++.++++...|.. +.........+.|+++|+||+|+........ +.+.. ...+++++||++|
T Consensus 72 ~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg 151 (215)
T cd04109 72 YGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTG 151 (215)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCC
Confidence 89999999999999888877655544 3332211123568999999999975443322 23332 2256899999999
Q ss_pred CCHHHHHHHHHHHhhccC
Q 008468 471 QGIQDLETAIMKIVGLHQ 488 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~~~~ 488 (564)
.|++++|++|.+.+....
T Consensus 152 ~gv~~lf~~l~~~l~~~~ 169 (215)
T cd04109 152 DRVNLLFQQLAAELLGVD 169 (215)
T ss_pred CCHHHHHHHHHHHHHhcc
Confidence 999999999999876433
No 35
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.85 E-value=2.7e-20 Score=176.73 Aligned_cols=156 Identities=17% Similarity=0.204 Sum_probs=116.7
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|.+|||||||++++.+..+. ..+.+|..+.....+.+++ ..+.+|||||..++....+ .++.
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~--------~~~~ 72 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFP--DYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRD--------QYMR 72 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--CCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhH--------HHhh
Confidence 79999999999999999999987753 4455555555555667777 4577899999876654432 4578
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTGQG 472 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg~G 472 (564)
.+|++++|||++++.++.....|........ ...+.|+++|+||+|+........ ..+.+ ...+++++||++|.|
T Consensus 73 ~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~-~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~ 151 (172)
T cd04141 73 CGEGFIICYSVTDRHSFQEASEFKKLITRVR-LTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHY 151 (172)
T ss_pred cCCEEEEEEECCchhHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCC
Confidence 9999999999999988888765544332211 234689999999999976543332 23322 335799999999999
Q ss_pred HHHHHHHHHHHhh
Q 008468 473 IQDLETAIMKIVG 485 (564)
Q Consensus 473 I~eL~~~L~~~l~ 485 (564)
|+++|++|.+.+.
T Consensus 152 v~~~f~~l~~~~~ 164 (172)
T cd04141 152 IDDAFHGLVREIR 164 (172)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 36
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.85 E-value=2e-20 Score=175.28 Aligned_cols=158 Identities=20% Similarity=0.301 Sum_probs=110.7
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCch----hHHHHhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD----DIVEKIGVERSEAV 394 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~----~~ie~~~i~~~~~~ 394 (564)
.+|+++|++|||||||+|+|++.... ++.++++|.+.......+++.++.+|||||+.+.. ..++...+. + .
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~-~--~ 76 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAIT-A--L 76 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc-cCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHH-H--H
Confidence 37999999999999999999998753 56678888888777777788999999999985321 111111110 1 1
Q ss_pred hhcCcEEEEEecCCCCCCh--hHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhcc-cCCcEEEEeccC
Q 008468 395 ALGADVIIMTVSAVDGWTS--EDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGN-SFNDHVFTCAVT 469 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~--~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~-~~~~~i~iSAkt 469 (564)
...+|++++|+|+++..+. .+. .++..+... ..+.|+++|+||+|+........ +++.. ...+++++||++
T Consensus 77 ~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~----~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (168)
T cd01897 77 AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL----FKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLT 152 (168)
T ss_pred HhccCcEEEEEeCCcccccchHHHHHHHHHHHhh----cCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecc
Confidence 2336899999999876542 222 233333221 13689999999999976544332 22222 335789999999
Q ss_pred CCCHHHHHHHHHHHh
Q 008468 470 GQGIQDLETAIMKIV 484 (564)
Q Consensus 470 g~GI~eL~~~L~~~l 484 (564)
|.|++++++++.+.+
T Consensus 153 ~~gi~~l~~~l~~~~ 167 (168)
T cd01897 153 EEGVDEVKNKACELL 167 (168)
T ss_pred cCCHHHHHHHHHHHh
Confidence 999999999998764
No 37
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.84 E-value=4e-20 Score=172.28 Aligned_cols=157 Identities=15% Similarity=0.200 Sum_probs=110.6
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|++|||||||+|+|++.++. ....+..+.+.....+.+++ ..+.+|||||...+... ...+++
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~~ 71 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFV-SKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEV--------RNEFYK 71 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHH--------HHHHhc
Confidence 58999999999999999999998753 23344444555555566655 56779999998654433 234578
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHH-HHhcccc--CCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNR-IQSNKKS--TESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVT 469 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~--~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAkt 469 (564)
.+|++|+|+|++++.++.....|.. +...... ...+.|+++|+||+|+.+...... ..+.. ...+++++||++
T Consensus 72 ~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 151 (168)
T cd04119 72 DTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACT 151 (168)
T ss_pred cCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCC
Confidence 9999999999999877666544443 3222110 124689999999999974332222 22222 235799999999
Q ss_pred CCCHHHHHHHHHHHh
Q 008468 470 GQGIQDLETAIMKIV 484 (564)
Q Consensus 470 g~GI~eL~~~L~~~l 484 (564)
|.|+++++++|.+.+
T Consensus 152 ~~gi~~l~~~l~~~l 166 (168)
T cd04119 152 GEGVNEMFQTLFSSI 166 (168)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998765
No 38
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.84 E-value=2.1e-20 Score=180.08 Aligned_cols=157 Identities=21% Similarity=0.226 Sum_probs=114.5
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCee--eEEEeCCCCCCchhHHHHhhhhhhhhhhhc
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVP--VTLLDTAGIRETDDIVEKIGVERSEAVALG 397 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~--i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~ 397 (564)
||+++|.+|||||||+++|....+ ...+++|+.+.....+.+++.. +.+|||||..++.... ..+++.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~~~~ 70 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF--VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALR--------DQWIRE 70 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHH--------HHHHHh
Confidence 589999999999999999998765 3456666655555556676654 7789999986655432 245889
Q ss_pred CcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCCCC
Q 008468 398 ADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTGQG 472 (564)
Q Consensus 398 aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg~G 472 (564)
+|++|+|||+++..++.....|. .+.........+.|+++|+||+|+........ .++.. ...+++++||++|.|
T Consensus 71 ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~ 150 (190)
T cd04144 71 GEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVN 150 (190)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCC
Confidence 99999999999987777664443 33332221135789999999999975443332 22222 235799999999999
Q ss_pred HHHHHHHHHHHhhc
Q 008468 473 IQDLETAIMKIVGL 486 (564)
Q Consensus 473 I~eL~~~L~~~l~~ 486 (564)
++++++++.+.+..
T Consensus 151 v~~l~~~l~~~l~~ 164 (190)
T cd04144 151 VERAFYTLVRALRQ 164 (190)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987753
No 39
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2e-20 Score=175.86 Aligned_cols=158 Identities=19% Similarity=0.192 Sum_probs=125.7
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCee--eEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVP--VTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~--i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
-+||+|+|+.|||||+|+.++.+..+. -+.......|+....+.++|.. +.+|||+|++.+... ...|+
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~-e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrti--------t~syY 79 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFT-ESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTI--------TSSYY 79 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcc-hhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhh--------hHhhc
Confidence 389999999999999999999998864 2444555678888999998865 678999999777643 45679
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcccC-Cc-EEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGNSF-ND-HVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~~~-~~-~i~iSAktg 470 (564)
++||+||+|||+++..++.....|..-.. +....++|.++|+||+|+.+...... +.+.... .+ ++++|||++
T Consensus 80 R~ahGii~vyDiT~~~SF~~v~~Wi~Ei~--~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~ 157 (205)
T KOG0084|consen 80 RGAHGIIFVYDITKQESFNNVKRWIQEID--RYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDS 157 (205)
T ss_pred cCCCeEEEEEEcccHHHhhhHHHHHHHhh--hhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCc
Confidence 99999999999999999988765543222 23345789999999999988776654 3444432 34 999999999
Q ss_pred CCHHHHHHHHHHHhhc
Q 008468 471 QGIQDLETAIMKIVGL 486 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~~ 486 (564)
.||++.|..|...+..
T Consensus 158 ~NVe~~F~~la~~lk~ 173 (205)
T KOG0084|consen 158 TNVEDAFLTLAKELKQ 173 (205)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999887753
No 40
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.84 E-value=4.3e-20 Score=171.66 Aligned_cols=153 Identities=16% Similarity=0.194 Sum_probs=114.9
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|++|||||||+|+|++.++. .+..++++.+.....+.+++. .+.+|||||...+...+ ..+++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~--------~~~~~ 71 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFD-NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLI--------PSYIR 71 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHH--------HHHhc
Confidence 48999999999999999999998864 366778888888888888774 57899999976554432 34478
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhc-ccCCcEEEEeccCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVG-NSFNDHVFTCAVTGQ 471 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~-~~~~~~i~iSAktg~ 471 (564)
.+|++++|+|++++.++.+...|.. +... ...+.|+++|+||+|+........ ..+. ....+++++||++|.
T Consensus 72 ~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (161)
T cd01861 72 DSSVAVVVYDITNRQSFDNTDKWIDDVRDE---RGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGH 148 (161)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHh---CCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCC
Confidence 9999999999998777766543333 3221 223689999999999954433222 2222 233678999999999
Q ss_pred CHHHHHHHHHHH
Q 008468 472 GIQDLETAIMKI 483 (564)
Q Consensus 472 GI~eL~~~L~~~ 483 (564)
|++++++++.+.
T Consensus 149 ~v~~l~~~i~~~ 160 (161)
T cd01861 149 NVKELFRKIASA 160 (161)
T ss_pred CHHHHHHHHHHh
Confidence 999999999764
No 41
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.84 E-value=5e-20 Score=179.10 Aligned_cols=158 Identities=19% Similarity=0.188 Sum_probs=113.6
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEEC-C--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC-G--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~-g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
+||+++|++|||||||+++|++..+. ....+....+.....+.++ + ..+.+|||||...+.... ..++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~-~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~--------~~~~ 71 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFS-QHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMT--------RVYY 71 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhH--------HHHh
Confidence 58999999999999999999987643 1223444445555566666 4 457899999986655442 3458
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHH-HHhccc-cCCCCCCEEEEEecCCCCCCCcchh---hhhccc--CCcEEEEecc
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNR-IQSNKK-STESSTPMILVINKIDCAPSASNEW---NKVGNS--FNDHVFTCAV 468 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~-~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~~--~~~~i~iSAk 468 (564)
+++|++++|||++++.+++....|.. +..... ....+.|+++|+||+|+.+...... +++... +..++++||+
T Consensus 72 ~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak 151 (201)
T cd04107 72 RGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAK 151 (201)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCC
Confidence 99999999999999888887755543 222111 1235789999999999974322222 333322 2579999999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 008468 469 TGQGIQDLETAIMKIVG 485 (564)
Q Consensus 469 tg~GI~eL~~~L~~~l~ 485 (564)
+|.|+++++++|.+.+.
T Consensus 152 ~~~~v~e~f~~l~~~l~ 168 (201)
T cd04107 152 EGINIEEAMRFLVKNIL 168 (201)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999998774
No 42
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.84 E-value=5.7e-20 Score=172.85 Aligned_cols=157 Identities=20% Similarity=0.160 Sum_probs=112.6
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+++|++|||||||++++.+..+. ....+.++.+.....+.+++. .+.+|||||...+.... ..++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~--------~~~~ 73 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFN-PSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTIT--------TAYY 73 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCC-cccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHH--------HHHh
Confidence 489999999999999999999988753 222344444555555666664 57899999976544332 3457
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhc-ccCCcEEEEeccCCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVG-NSFNDHVFTCAVTGQ 471 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~-~~~~~~i~iSAktg~ 471 (564)
+++|++++|+|++++.++.+...|...... ....+.|+++|+||+|+.+...... ..+. ....+++++||++|.
T Consensus 74 ~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~--~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 151 (167)
T cd01867 74 RGAMGIILVYDITDEKSFENIRNWMRNIEE--HASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANI 151 (167)
T ss_pred CCCCEEEEEEECcCHHHHHhHHHHHHHHHH--hCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 899999999999988777765444332221 1234689999999999976443322 2222 223579999999999
Q ss_pred CHHHHHHHHHHHhh
Q 008468 472 GIQDLETAIMKIVG 485 (564)
Q Consensus 472 GI~eL~~~L~~~l~ 485 (564)
|++++++.+.+.+.
T Consensus 152 ~v~~~~~~i~~~~~ 165 (167)
T cd01867 152 NVEEAFFTLAKDIK 165 (167)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998763
No 43
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.84 E-value=5.9e-20 Score=177.38 Aligned_cols=155 Identities=19% Similarity=0.226 Sum_probs=117.5
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccc-cCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEI-AGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~-~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
.+||+++|..|||||||+.++....+. .++ +..+.+.....+.+++ ..+.+|||+|...+..... .+
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~--------~~ 75 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTE--SPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFR--------SY 75 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHH--------HH
Confidence 489999999999999999999987643 333 3345566666677777 5567899999976655432 45
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
++.+|++|+|||++++.++++...|...... ..++.|+|+|+||+|+........ +.+.+ ...+++++||++|
T Consensus 76 ~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~---~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g 152 (189)
T cd04121 76 SRGAQGIILVYDITNRWSFDGIDRWIKEIDE---HAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCN 152 (189)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHH---hCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCC
Confidence 7899999999999999988887655443322 124789999999999976443332 33333 3357999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 008468 471 QGIQDLETAIMKIVG 485 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~ 485 (564)
.||+++|++|.+.+.
T Consensus 153 ~~V~~~F~~l~~~i~ 167 (189)
T cd04121 153 FNITESFTELARIVL 167 (189)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
No 44
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.84 E-value=7e-20 Score=171.63 Aligned_cols=156 Identities=17% Similarity=0.190 Sum_probs=114.0
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|++|||||||++++++..+.. ...++.+.+.....+.+++. .+.+|||||...+.... ..+++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~~ 73 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT--------SSYYR 73 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHH--------HHHhC
Confidence 799999999999999999999887542 33455555666666777664 57899999976554432 34578
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTGQG 472 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg~G 472 (564)
.+|++++|+|++++.++.+...|....... ...+.|+++|+||+|+........ ..+.. ...+++++||++|.|
T Consensus 74 ~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~--~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 151 (166)
T cd01869 74 GAHGIIIVYDVTDQESFNNVKQWLQEIDRY--ASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATN 151 (166)
T ss_pred cCCEEEEEEECcCHHHHHhHHHHHHHHHHh--CCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcC
Confidence 999999999999877776654443322221 124689999999999876544322 22222 235799999999999
Q ss_pred HHHHHHHHHHHhh
Q 008468 473 IQDLETAIMKIVG 485 (564)
Q Consensus 473 I~eL~~~L~~~l~ 485 (564)
++++++.|.+.+.
T Consensus 152 v~~~~~~i~~~~~ 164 (166)
T cd01869 152 VEQAFMTMAREIK 164 (166)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988763
No 45
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.84 E-value=6.1e-20 Score=171.69 Aligned_cols=155 Identities=20% Similarity=0.237 Sum_probs=113.5
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|++|||||||+|+|++.++. ....|.++.+.....+..++. .+.+|||||...+.... ..+++
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~~~ 74 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFN-LDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAIT--------SAYYR 74 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHH--------HHHHC
Confidence 79999999999999999999988754 234566666666677777774 57899999986554432 24478
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTGQG 472 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg~G 472 (564)
.+|++++|+|++++.++.+...|...... ....+.|+++|+||+|+........ ..+.. ...+++++||++|.|
T Consensus 75 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~--~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 152 (165)
T cd01868 75 GAVGALLVYDITKKQTFENVERWLKELRD--HADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTN 152 (165)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHH--hCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence 99999999999987777666544332221 1223589999999999976443222 22222 335799999999999
Q ss_pred HHHHHHHHHHHh
Q 008468 473 IQDLETAIMKIV 484 (564)
Q Consensus 473 I~eL~~~L~~~l 484 (564)
++++++.+.+.+
T Consensus 153 v~~l~~~l~~~i 164 (165)
T cd01868 153 VEEAFKQLLTEI 164 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 46
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.84 E-value=5.3e-20 Score=172.75 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=108.5
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEEC--CeeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC--GVPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~--g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|++|||||||++++++..+. ..+..|........+..+ ...+.+|||||...+.... ..++.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~~~ 71 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQ--------RLSIS 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--CCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHH--------HHHhh
Confidence 79999999999999999999988753 233333333333333333 3567899999998765442 23478
Q ss_pred cCcEEEEEecCCCCCChhHHHHH-HHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELL-NRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTGQ 471 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l-~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg~ 471 (564)
.+|++++|+|++++.++.....| ..+.........+.|+++|+||+|+........ ..+.. ...+++++||++|.
T Consensus 72 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~ 151 (165)
T cd04140 72 KGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNH 151 (165)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCC
Confidence 89999999999998877765444 333332222235789999999999976433322 12222 23578999999999
Q ss_pred CHHHHHHHHHHH
Q 008468 472 GIQDLETAIMKI 483 (564)
Q Consensus 472 GI~eL~~~L~~~ 483 (564)
|+++++++|.+.
T Consensus 152 ~v~~~f~~l~~~ 163 (165)
T cd04140 152 NVQELFQELLNL 163 (165)
T ss_pred CHHHHHHHHHhc
Confidence 999999998754
No 47
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.84 E-value=4.8e-20 Score=175.51 Aligned_cols=153 Identities=23% Similarity=0.270 Sum_probs=113.1
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|.+|||||||++++....+ +..+.+|..+.....+.+++ ..+.||||+|...+.... ..+++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~~~ 71 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR--------PLSYP 71 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhh--------hhhcc
Confidence 6899999999999999999998775 45666666665555667777 456799999997765432 23578
Q ss_pred cCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCc------------chh---hhhcccC-
Q 008468 397 GADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSAS------------NEW---NKVGNSF- 459 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~------------~~~---~~l~~~~- 459 (564)
.+|++|+|||++++.++++.. .|...... ...+.|+|+|+||+|+.+... ... +++.+..
T Consensus 72 ~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~---~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~ 148 (175)
T cd01874 72 QTDVFLVCFSVVSPSSFENVKEKWVPEITH---HCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLK 148 (175)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHH---hCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhC
Confidence 999999999999988887764 34433222 124689999999999865421 111 2233222
Q ss_pred -CcEEEEeccCCCCHHHHHHHHHHHh
Q 008468 460 -NDHVFTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 460 -~~~i~iSAktg~GI~eL~~~L~~~l 484 (564)
..++++||++|.|++++|+.+.+.+
T Consensus 149 ~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 149 AVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 4799999999999999999998753
No 48
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2.6e-20 Score=174.42 Aligned_cols=159 Identities=21% Similarity=0.219 Sum_probs=123.4
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+++|..|||||||+-++....+.. ...+.+.--+....+.+++ +++.||||+|++.+... +..|+
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e-~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~sl--------apMYy 75 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHE-NIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSL--------APMYY 75 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCcccc-ccccccccEEEEEEEEeCCcEEEEEEEEcCCccccccc--------cccee
Confidence 3899999999999999999999988642 1234445566777777877 66779999999887655 45679
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
++|+++|+|||+++..++...+.|-. +... ..++.-+.+|+||+||...+.... +.+++ ....++++|||+|
T Consensus 76 RgA~AAivvYDit~~~SF~~aK~WvkeL~~~---~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg 152 (200)
T KOG0092|consen 76 RGANAAIVVYDITDEESFEKAKNWVKELQRQ---ASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTG 152 (200)
T ss_pred cCCcEEEEEEecccHHHHHHHHHHHHHHHhh---CCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccc
Confidence 99999999999999988888765544 3332 235566778999999988665554 34443 3457999999999
Q ss_pred CCHHHHHHHHHHHhhccC
Q 008468 471 QGIQDLETAIMKIVGLHQ 488 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~~~~ 488 (564)
.|++++|..|.+.+....
T Consensus 153 ~Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 153 ENVNEIFQAIAEKLPCSD 170 (200)
T ss_pred cCHHHHHHHHHHhccCcc
Confidence 999999999999886443
No 49
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=6.5e-20 Score=198.96 Aligned_cols=157 Identities=36% Similarity=0.501 Sum_probs=124.0
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGA 398 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~a 398 (564)
++|+|+|.+|||||||+|+|++...+++.+.+++|++.....+.+++..+.+|||||+..............+..++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 58999999999999999999999888899999999999999999999999999999998633322222233345668999
Q ss_pred cEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcc-cCCcEEEEeccCCCCHHHHH
Q 008468 399 DVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGN-SFNDHVFTCAVTGQGIQDLE 477 (564)
Q Consensus 399 D~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~-~~~~~i~iSAktg~GI~eL~ 477 (564)
|++++|+|++++.+..+......+... +.|+++|+||+|+....... .++.. .+..++++||++|.|+++++
T Consensus 82 d~il~vvd~~~~~~~~~~~~~~~l~~~------~~piilv~NK~D~~~~~~~~-~~~~~lg~~~~~~iSa~~g~gv~~l~ 154 (435)
T PRK00093 82 DVILFVVDGRAGLTPADEEIAKILRKS------NKPVILVVNKVDGPDEEADA-YEFYSLGLGEPYPISAEHGRGIGDLL 154 (435)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHc------CCcEEEEEECccCccchhhH-HHHHhcCCCCCEEEEeeCCCCHHHHH
Confidence 999999999988777766655555432 68999999999975422111 22222 33458999999999999999
Q ss_pred HHHHH
Q 008468 478 TAIMK 482 (564)
Q Consensus 478 ~~L~~ 482 (564)
+.+.+
T Consensus 155 ~~I~~ 159 (435)
T PRK00093 155 DAILE 159 (435)
T ss_pred HHHHh
Confidence 99987
No 50
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.83 E-value=9.3e-20 Score=171.08 Aligned_cols=154 Identities=20% Similarity=0.206 Sum_probs=111.8
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCee-EEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTT-RDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT-~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
+||+++|++|||||||++++.+..+ ...+++|. .+.....+.+++. .+.+|||||...+.... ..++
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~~ 72 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVT--------RSYY 72 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH--------HHHh
Confidence 7999999999999999999998864 35555544 3343445566654 56899999986554332 3458
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTGQ 471 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg~ 471 (564)
+++|++++|+|++++.+++....|...... ....+.|+++|+||+|+........ .++.. ...+++++||++|.
T Consensus 73 ~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~--~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 150 (166)
T cd04122 73 RGAAGALMVYDITRRSTYNHLSSWLTDARN--LTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGE 150 (166)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHH--hCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCC
Confidence 899999999999998777766544332211 1234689999999999976554332 22322 33579999999999
Q ss_pred CHHHHHHHHHHHh
Q 008468 472 GIQDLETAIMKIV 484 (564)
Q Consensus 472 GI~eL~~~L~~~l 484 (564)
|+++++..+.+.+
T Consensus 151 ~i~e~f~~l~~~~ 163 (166)
T cd04122 151 NVEDAFLETAKKI 163 (166)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 51
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.83 E-value=1.1e-19 Score=170.66 Aligned_cols=156 Identities=17% Similarity=0.160 Sum_probs=109.7
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|++|||||||+|+|.+.++.. ...+.++.+.....+..++ ..+.+|||||...+.... ..+++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~--------~~~~~ 72 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS-AFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTIT--------TAYYR 72 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHH--------HHHcc
Confidence 689999999999999999999987531 2223333344444444444 568899999986554332 34589
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhccc-CCcEEEEeccCCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGNS-FNDHVFTCAVTGQG 472 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~~-~~~~i~iSAktg~G 472 (564)
.+|++++|+|+++..+++....|...... ....+.|+++|+||+|+........ .++.+. ..+++++||++|.|
T Consensus 73 ~~~~~l~v~d~~~~~s~~~~~~~~~~i~~--~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 150 (165)
T cd01865 73 GAMGFILMYDITNEESFNAVQDWSTQIKT--YSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENIN 150 (165)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHH--hCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence 99999999999987666665444332221 1224689999999999976543222 233322 24799999999999
Q ss_pred HHHHHHHHHHHhh
Q 008468 473 IQDLETAIMKIVG 485 (564)
Q Consensus 473 I~eL~~~L~~~l~ 485 (564)
+++++++|.+.+.
T Consensus 151 v~~l~~~l~~~~~ 163 (165)
T cd01865 151 VKQVFERLVDIIC 163 (165)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988653
No 52
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.83 E-value=6.6e-20 Score=171.11 Aligned_cols=154 Identities=21% Similarity=0.242 Sum_probs=113.2
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCee--eEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVP--VTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~--i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|.+|||||||+++++...+. ..+.+|..+.....+.+++.. +.||||||...+...++ .+++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~--------~~~~ 71 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRD--------LYIK 71 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHH--------HHHh
Confidence 79999999999999999999987653 445555555555667777654 67899999877665533 3478
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTGQ 471 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg~ 471 (564)
++|++++|+|++++.++.+...|.. +.... ...+.|+++|+||+|+........ ..+.. ...+++++||++|.
T Consensus 72 ~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 149 (163)
T cd04176 72 NGQGFIVVYSLVNQQTFQDIKPMRDQIVRVK--GYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKT 149 (163)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCC
Confidence 9999999999999877776654433 33321 125789999999999965433222 22322 22578999999999
Q ss_pred CHHHHHHHHHHHh
Q 008468 472 GIQDLETAIMKIV 484 (564)
Q Consensus 472 GI~eL~~~L~~~l 484 (564)
|++++++++.+.+
T Consensus 150 ~v~~l~~~l~~~l 162 (163)
T cd04176 150 MVNELFAEIVRQM 162 (163)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999998654
No 53
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.83 E-value=9.9e-20 Score=175.56 Aligned_cols=158 Identities=18% Similarity=0.181 Sum_probs=112.4
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceecccc-CeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIA-GTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~-gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
+||+|+|++|||||||++++.+.++. ...+. .+..+.....+.+++ ..+.||||||...+.... ..++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~~ 71 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFL-NGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVT--------HAYY 71 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-ccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhh--------HHHc
Confidence 58999999999999999999988753 23333 333455444566666 467899999975543322 3457
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTGQ 471 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg~ 471 (564)
+.+|++++|+|+++..++++...|....... ...+.|+++|+||+|+........ +.+.. ...+++++||++|.
T Consensus 72 ~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~--~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~ 149 (191)
T cd04112 72 RDAHALLLLYDITNKASFDNIRAWLTEIKEY--AQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGL 149 (191)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 8899999999999887776665444322221 224689999999999965433221 23322 23579999999999
Q ss_pred CHHHHHHHHHHHhhcc
Q 008468 472 GIQDLETAIMKIVGLH 487 (564)
Q Consensus 472 GI~eL~~~L~~~l~~~ 487 (564)
|+++++++|.+.+...
T Consensus 150 ~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 150 NVELAFTAVAKELKHR 165 (191)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999987544
No 54
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.83 E-value=8.6e-20 Score=208.94 Aligned_cols=161 Identities=27% Similarity=0.384 Sum_probs=127.8
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGA 398 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~a 398 (564)
.+|+|+|.||||||||+|+|++...+++++.+|+|++.......+++..+.+|||||+......++......+..++..+
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 355 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLA 355 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhC
Confidence 57999999999999999999999888899999999999999999999999999999987433223333345556678999
Q ss_pred cEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcccCCcEEEEeccCCCCHHHHHH
Q 008468 399 DVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLET 478 (564)
Q Consensus 399 D~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL~~ 478 (564)
|++|+|+|++++.+..+..+...+.. .++|+|+|+||+|+........+.+...+...+++||++|.|++++++
T Consensus 356 D~iL~VvDa~~~~~~~d~~i~~~Lr~------~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~GI~eLl~ 429 (712)
T PRK09518 356 DAVVFVVDGQVGLTSTDERIVRMLRR------AGKPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRGVGDLLD 429 (712)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHh------cCCCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCCCchHHHH
Confidence 99999999998777666655555543 378999999999986532222122223344678999999999999999
Q ss_pred HHHHHhh
Q 008468 479 AIMKIVG 485 (564)
Q Consensus 479 ~L~~~l~ 485 (564)
+|.+.+.
T Consensus 430 ~i~~~l~ 436 (712)
T PRK09518 430 EALDSLK 436 (712)
T ss_pred HHHHhcc
Confidence 9998774
No 55
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.83 E-value=8e-20 Score=173.53 Aligned_cols=157 Identities=17% Similarity=0.142 Sum_probs=110.7
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEEC------------CeeeEEEeCCCCCCchhHHHH
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC------------GVPVTLLDTAGIRETDDIVEK 385 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~------------g~~i~LiDTpG~~~~~~~ie~ 385 (564)
-+||+++|++|||||||++++.+..+. ....+..+.+.....+.+. ...+.||||||...+...
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--- 79 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFN-PKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSL--- 79 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHH---
Confidence 389999999999999999999987653 2223333444444444443 256789999997654433
Q ss_pred hhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCc
Q 008468 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFND 461 (564)
Q Consensus 386 ~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~ 461 (564)
...+++++|++++|+|++++.++.+...|....... ....+.|+++|+||+|+........ +++.+ ...+
T Consensus 80 -----~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~ 153 (180)
T cd04127 80 -----TTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTH-AYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIP 153 (180)
T ss_pred -----HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCe
Confidence 234588999999999999887777765444322211 1124679999999999976543322 23332 2357
Q ss_pred EEEEeccCCCCHHHHHHHHHHHh
Q 008468 462 HVFTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 462 ~i~iSAktg~GI~eL~~~L~~~l 484 (564)
++++||++|.|++++++.|.+.+
T Consensus 154 ~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 154 YFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998765
No 56
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.83 E-value=8.6e-20 Score=171.00 Aligned_cols=155 Identities=16% Similarity=0.158 Sum_probs=110.0
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+++|++|||||||++++.+..+.. ...+..+.+.....+.+++ ..+.+|||||...+... ...++
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~~ 73 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSE-RQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTI--------TQSYY 73 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcc-cCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHH--------HHHHh
Confidence 3799999999999999999998876431 1223333455556667777 46789999997554332 23457
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhccc--CCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGNS--FNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~~--~~~~i~iSAktg 470 (564)
+.+|++++|+|++++.+++....|...... ....+.|+++|+||+|+........ ..+.+. ...++++||++|
T Consensus 74 ~~~d~~llv~d~~~~~s~~~~~~~~~~i~~--~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 151 (165)
T cd01864 74 RSANGAIIAYDITRRSSFESVPHWIEEVEK--YGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKES 151 (165)
T ss_pred ccCCEEEEEEECcCHHHHHhHHHHHHHHHH--hCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCC
Confidence 899999999999998777665444332221 1234789999999999976543322 233332 246899999999
Q ss_pred CCHHHHHHHHHHH
Q 008468 471 QGIQDLETAIMKI 483 (564)
Q Consensus 471 ~GI~eL~~~L~~~ 483 (564)
.|++++++.+.+.
T Consensus 152 ~~v~~~~~~l~~~ 164 (165)
T cd01864 152 QNVEEAFLLMATE 164 (165)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999864
No 57
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.83 E-value=2.1e-19 Score=166.02 Aligned_cols=160 Identities=30% Similarity=0.407 Sum_probs=119.3
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhc
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALG 397 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~ 397 (564)
..+|+++|++|+|||||+|+|++.+.+.+...+.+++.........++..+.+|||||+..................+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999987777777788887777666667788999999999865543332222334556889
Q ss_pred CcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhccc--CCcEEEEeccCCCC
Q 008468 398 ADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGNS--FNDHVFTCAVTGQG 472 (564)
Q Consensus 398 aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~~--~~~~i~iSAktg~G 472 (564)
+|++++|+|++++.+..+...+..+... +.|+++|+||+|+........ +.+... ..+++++|++++.|
T Consensus 83 ~d~i~~v~d~~~~~~~~~~~~~~~~~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 83 VDLVLFVVDASEPIGEGDEFILELLKKS------KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN 156 (168)
T ss_pred CCEEEEEEECCCccCchHHHHHHHHHHh------CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence 9999999999987544444444444322 579999999999974322211 233332 36789999999999
Q ss_pred HHHHHHHHHHH
Q 008468 473 IQDLETAIMKI 483 (564)
Q Consensus 473 I~eL~~~L~~~ 483 (564)
++++++.|.+.
T Consensus 157 ~~~l~~~l~~~ 167 (168)
T cd04163 157 VDELLEEIVKY 167 (168)
T ss_pred hHHHHHHHHhh
Confidence 99999998764
No 58
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.83 E-value=1.3e-19 Score=169.04 Aligned_cols=155 Identities=22% Similarity=0.248 Sum_probs=109.4
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCee-EEEEEEEEEEC---CeeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTT-RDVIEASVTVC---GVPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT-~d~~~~~~~~~---g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
+||+++|++|||||||+++|.........++..|+ .+.....+.++ ...+.+|||||...+.... ..+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~ 72 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMV--------SNY 72 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHH--------HHH
Confidence 58999999999999999999875323345555444 45544555543 3678899999975554433 244
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
+.++|++++|+|++++.++.+.+.|....... ..+.|+++|+||+|+.+...... +.+.. ...+++++||++|
T Consensus 73 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 149 (164)
T cd04101 73 WESPSVFILVYDVSNKASFENCSRWVNKVRTA---SKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRG 149 (164)
T ss_pred hCCCCEEEEEEECcCHHHHHHHHHHHHHHHHh---CCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 78999999999999877666554443322211 24689999999999976543332 22322 2357899999999
Q ss_pred CCHHHHHHHHHHHh
Q 008468 471 QGIQDLETAIMKIV 484 (564)
Q Consensus 471 ~GI~eL~~~L~~~l 484 (564)
.|++++++.|.+.+
T Consensus 150 ~gi~~l~~~l~~~~ 163 (164)
T cd04101 150 VGYEEPFESLARAF 163 (164)
T ss_pred CChHHHHHHHHHHh
Confidence 99999999998764
No 59
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.83 E-value=1.1e-19 Score=168.86 Aligned_cols=151 Identities=23% Similarity=0.243 Sum_probs=106.1
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCccee--ccccCeeEEEEEEEEEEC-CeeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIV--TEIAGTTRDVIEASVTVC-GVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~v--s~~~gtT~d~~~~~~~~~-g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
+.|+++|++|||||||+|+|++...... ...+++|.+.....+.+. +..+.+|||||+.++... ...++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~--------~~~~~ 72 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKN--------MLAGA 72 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHH--------HHhhh
Confidence 3689999999999999999997542222 224577887777777776 788999999998554221 23457
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcch----h--hhhcc---cCCcEEEEe
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE----W--NKVGN---SFNDHVFTC 466 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~----~--~~l~~---~~~~~i~iS 466 (564)
..+|++++|+|++++...+..+.+..+... ...|+++|+||+|+....... . +.+.. ...+++++|
T Consensus 73 ~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (164)
T cd04171 73 GGIDLVLLVVAADEGIMPQTREHLEILELL-----GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVS 147 (164)
T ss_pred hcCCEEEEEEECCCCccHhHHHHHHHHHHh-----CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEe
Confidence 889999999999875544444433332211 124899999999997643111 1 22222 235799999
Q ss_pred ccCCCCHHHHHHHHHH
Q 008468 467 AVTGQGIQDLETAIMK 482 (564)
Q Consensus 467 Aktg~GI~eL~~~L~~ 482 (564)
|++|.|++++++.+.+
T Consensus 148 a~~~~~v~~l~~~l~~ 163 (164)
T cd04171 148 AVTGEGIEELKEYLDE 163 (164)
T ss_pred CCCCcCHHHHHHHHhh
Confidence 9999999999998754
No 60
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.83 E-value=1.4e-19 Score=169.52 Aligned_cols=155 Identities=19% Similarity=0.227 Sum_probs=108.4
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|.+|||||||++++++.++.. ...+....+.......+++ ..+.+|||+|...+...+ ..+++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~~~ 71 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEP-QQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMH--------ASYYH 71 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhh--------HHHhC
Confidence 589999999999999999999877532 2222223334444445554 457799999987655443 34588
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcc-cCCcEEEEeccCCCCHHH
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGN-SFNDHVFTCAVTGQGIQD 475 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~-~~~~~i~iSAktg~GI~e 475 (564)
.+|++++|+|++++.++.+...|...... ...+.|+++|+||+|+..........+.. ...+++++||++|.|+++
T Consensus 72 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~---~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 148 (161)
T cd04124 72 KAHACILVFDVTRKITYKNLSKWYEELRE---YRPEIPCIVVANKIDLDPSVTQKKFNFAEKHNLPLYYVSAADGTNVVK 148 (161)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHH---hCCCCcEEEEEECccCchhHHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 99999999999988777665444332221 12468999999999985432111122222 235789999999999999
Q ss_pred HHHHHHHHhh
Q 008468 476 LETAIMKIVG 485 (564)
Q Consensus 476 L~~~L~~~l~ 485 (564)
+++.+.+.+.
T Consensus 149 l~~~l~~~~~ 158 (161)
T cd04124 149 LFQDAIKLAV 158 (161)
T ss_pred HHHHHHHHHH
Confidence 9999988664
No 61
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.83 E-value=1.2e-19 Score=168.76 Aligned_cols=153 Identities=25% Similarity=0.237 Sum_probs=110.5
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEEC----CeeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC----GVPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~----g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
+||+++|++|||||||+|++++..+. ....+..+.+.....+.++ ...+.+|||||..++.... ..+
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~ 71 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFT-KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAIT--------KAY 71 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhH--------HHH
Confidence 58999999999999999999987653 1223444556555556655 3568899999976554332 345
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
++.+|++++|+|++++.++.....|...... ...+.|+++|+||+|+........ +.+.+ ...+++++||++|
T Consensus 72 ~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~---~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (162)
T cd04106 72 YRGAQACILVFSTTDRESFEAIESWKEKVEA---ECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDD 148 (162)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHH---hCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCC
Confidence 8899999999999988777666544432221 234789999999999976544322 22332 2357999999999
Q ss_pred CCHHHHHHHHHHH
Q 008468 471 QGIQDLETAIMKI 483 (564)
Q Consensus 471 ~GI~eL~~~L~~~ 483 (564)
.|+++++++|.+.
T Consensus 149 ~~v~~l~~~l~~~ 161 (162)
T cd04106 149 FNVTELFEYLAEK 161 (162)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998764
No 62
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.83 E-value=8.9e-20 Score=172.47 Aligned_cols=152 Identities=18% Similarity=0.232 Sum_probs=105.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+.+||+++|++|||||||+++|....+. ...|++..+. ..+..++..+.+|||||...+.... ..++.
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~--~~~~t~g~~~--~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~~~ 75 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV--TTIPTVGFNV--ETVTYKNVKFNVWDVGGQDKIRPLW--------RHYYT 75 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc--cccCCcccce--EEEEECCEEEEEEECCCCHHHHHHH--------HHHhc
Confidence 4589999999999999999999876643 3334333333 2445578889999999986654432 34589
Q ss_pred cCcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhc------ccCCcEEEEecc
Q 008468 397 GADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVG------NSFNDHVFTCAV 468 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~------~~~~~~i~iSAk 468 (564)
++|++++|+|+++..++.+. +.+..+.... ...+.|+++|+||+|+......+. ++.. .....++++||+
T Consensus 76 ~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~--~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk 153 (168)
T cd04149 76 GTQGLIFVVDSADRDRIDEARQELHRIINDR--EMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAT 153 (168)
T ss_pred cCCEEEEEEeCCchhhHHHHHHHHHHHhcCH--hhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCC
Confidence 99999999999987666544 2333333221 124689999999999965322221 1211 112357899999
Q ss_pred CCCCHHHHHHHHHH
Q 008468 469 TGQGIQDLETAIMK 482 (564)
Q Consensus 469 tg~GI~eL~~~L~~ 482 (564)
+|.|+++++++|.+
T Consensus 154 ~g~gv~~~~~~l~~ 167 (168)
T cd04149 154 SGDGLYEGLTWLSS 167 (168)
T ss_pred CCCChHHHHHHHhc
Confidence 99999999999864
No 63
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=9.9e-20 Score=173.43 Aligned_cols=159 Identities=19% Similarity=0.144 Sum_probs=128.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeee--EEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPV--TLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i--~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+||+++|++|||||+++.++..+.+. .+.......|+....+.++|..+ .+|||+|+..+... ...|
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~-~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti--------~~sY 81 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFN-TSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTI--------TTAY 81 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCc-CCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHH--------HHHH
Confidence 4589999999999999999999998764 24444556788888999988654 68999999887655 4567
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
++.|+.+++|||+++..++++...|....+.. ...++|.++|+||+|+.....+.. +.++. ....++++|||+|
T Consensus 82 yrgA~gi~LvyDitne~Sfeni~~W~~~I~e~--a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~ 159 (207)
T KOG0078|consen 82 YRGAMGILLVYDITNEKSFENIRNWIKNIDEH--ASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTN 159 (207)
T ss_pred HhhcCeeEEEEEccchHHHHHHHHHHHHHHhh--CCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCC
Confidence 99999999999999999999887666655442 344899999999999988665544 45554 4478999999999
Q ss_pred CCHHHHHHHHHHHhhc
Q 008468 471 QGIQDLETAIMKIVGL 486 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~~ 486 (564)
.||++.|-.|.+.+..
T Consensus 160 ~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 160 FNIEEAFLSLARDILQ 175 (207)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999987753
No 64
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.83 E-value=1.1e-19 Score=207.98 Aligned_cols=162 Identities=29% Similarity=0.395 Sum_probs=129.6
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCch---hHHHHhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD---DIVEKIGVERSEAV 394 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~---~~ie~~~i~~~~~~ 394 (564)
.++|+++|.+|||||||+|+|++.++.+++++++||++.....+.+++.++.+|||||+.... ...+.+...++..+
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~ 529 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAA 529 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHH
Confidence 489999999999999999999999988889999999999988889999999999999986421 11233333445566
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcc-----cCCcEEEEec
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGN-----SFNDHVFTCA 467 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~-----~~~~~i~iSA 467 (564)
++.+|++++|+|++++.+.++...+..+.. .++|+|+|+||+|+.+...... +.+.. .+.+++++||
T Consensus 530 i~~advvilViDat~~~s~~~~~i~~~~~~------~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA 603 (712)
T PRK09518 530 IERSELALFLFDASQPISEQDLKVMSMAVD------AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA 603 (712)
T ss_pred hhcCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence 899999999999999998888877766543 2689999999999976432221 12221 2356799999
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 008468 468 VTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 468 ktg~GI~eL~~~L~~~l~ 485 (564)
++|.|++++++.+.+.+.
T Consensus 604 ktg~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALE 621 (712)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999998875
No 65
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.83 E-value=7.6e-20 Score=183.83 Aligned_cols=161 Identities=17% Similarity=0.225 Sum_probs=117.7
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|.+|||||||++++++..+. ..+.+|+.+.....+.+++ +.+.||||+|...+..+. ..++.
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~--~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~--------~~~~~ 70 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFE--EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMR--------RLSIL 70 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHH--------HHHhc
Confidence 58999999999999999999987753 4666677677667777777 567799999987654432 23477
Q ss_pred cCcEEEEEecCCCCCChhHHHHH-HHHHhcc------ccCCCCCCEEEEEecCCCCCCCcchh---hhhcc--cCCcEEE
Q 008468 397 GADVIIMTVSAVDGWTSEDSELL-NRIQSNK------KSTESSTPMILVINKIDCAPSASNEW---NKVGN--SFNDHVF 464 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l-~~l~~~~------~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~--~~~~~i~ 464 (564)
.+|++|+|||+++..++++...| ..+.... .....+.|+|+|+||+|+........ .++.. ....+++
T Consensus 71 ~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~e 150 (247)
T cd04143 71 TGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFE 150 (247)
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEE
Confidence 89999999999998877766443 3333221 11234789999999999975333332 22221 2356999
Q ss_pred EeccCCCCHHHHHHHHHHHhhccCC
Q 008468 465 TCAVTGQGIQDLETAIMKIVGLHQI 489 (564)
Q Consensus 465 iSAktg~GI~eL~~~L~~~l~~~~~ 489 (564)
+||++|.|+++++++|.+.......
T Consensus 151 vSAktg~gI~elf~~L~~~~~~p~e 175 (247)
T cd04143 151 VSAKKNSNLDEMFRALFSLAKLPNE 175 (247)
T ss_pred EeCCCCCCHHHHHHHHHHHhccccc
Confidence 9999999999999999998754443
No 66
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.83 E-value=2.1e-19 Score=177.70 Aligned_cols=187 Identities=23% Similarity=0.272 Sum_probs=130.2
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeE-EEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTR-DVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~-d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
+||+++|++|||||||++++++..+. ...++.+.. +.....+.+++ ..+.+|||||... ... ..++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~---~~~-------~~~~ 69 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM---WTE-------DSCM 69 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch---HHH-------hHHh
Confidence 58999999999999999999876642 133333322 45555566654 5678999999861 111 1234
Q ss_pred h-cCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccC
Q 008468 396 L-GADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVT 469 (564)
Q Consensus 396 ~-~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAkt 469 (564)
. .+|++++|||++++.++.....|. .+.... ...+.|+|+|+||+|+........ ..+.. ...+++++||++
T Consensus 70 ~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~--~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~ 147 (221)
T cd04148 70 QYQGDAFVVVYSVTDRSSFERASELRIQLRRNR--QLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGL 147 (221)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCC
Confidence 5 899999999999987776554333 333321 124789999999999976544332 22322 235789999999
Q ss_pred CCCHHHHHHHHHHHhhccC--CCCCCc--cccccHHHHHHHHHHHHHHHHHHH
Q 008468 470 GQGIQDLETAIMKIVGLHQ--IPAGGR--RWAVNQRQCEQLMRTKEALVRLKS 518 (564)
Q Consensus 470 g~GI~eL~~~L~~~l~~~~--~~~~~~--~~~~~~r~~~~l~~~~~~L~~~~~ 518 (564)
|.||+++++.+.+.+.... ....+. ....+.|+...+.++.+.|.++..
T Consensus 148 ~~gv~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~l~~~~~ 200 (221)
T cd04148 148 QHNVDELLEGIVRQIRLRRDSKEKNERRSRRAYRGRRESLTSKAKRFLGKLVA 200 (221)
T ss_pred CCCHHHHHHHHHHHHHhhhccccccCccccccccCccchHHHHHHHHHHHHhc
Confidence 9999999999999875322 111222 457788999999999999988765
No 67
>PTZ00369 Ras-like protein; Provisional
Probab=99.83 E-value=1.6e-19 Score=173.88 Aligned_cols=157 Identities=19% Similarity=0.182 Sum_probs=115.3
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+++|++|||||||++++.+..+ ...+.+|..+.....+.+++. .+.+|||||..++...+. .++
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~--------~~~ 74 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHF--IDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRD--------QYM 74 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC--CcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHH--------HHh
Confidence 48999999999999999999998764 345555554555555666664 467899999987766543 357
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
+.+|++++|+|++++.++++...|.. +.... ...+.|+++|+||+|+........ ..+.. ...+++++||++|
T Consensus 75 ~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~--~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~ 152 (189)
T PTZ00369 75 RTGQGFLCVYSITSRSSFEEIASFREQILRVK--DKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQR 152 (189)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCC
Confidence 89999999999999887777654443 33221 234789999999999865433222 22222 2357899999999
Q ss_pred CCHHHHHHHHHHHhhc
Q 008468 471 QGIQDLETAIMKIVGL 486 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~~ 486 (564)
.|+++++++|.+.+..
T Consensus 153 ~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 153 VNVDEAFYELVREIRK 168 (189)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987743
No 68
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.83 E-value=1.7e-19 Score=167.99 Aligned_cols=154 Identities=18% Similarity=0.180 Sum_probs=110.5
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+|+|++|||||||+++|++.++. ....+..+.+.....+.+++ ..+.+|||||...+... ...+++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~--------~~~~~~ 71 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFK-EDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSV--------TRSYYR 71 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHh--------HHHHhc
Confidence 58999999999999999999988753 23334444455555566665 45789999998654432 234578
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhc-ccCCcEEEEeccCCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVG-NSFNDHVFTCAVTGQG 472 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~-~~~~~~i~iSAktg~G 472 (564)
.+|++++|+|++++.++.....|...... ....+.|+++|+||+|+........ ..+. ....+++++||++|.|
T Consensus 72 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~--~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 149 (161)
T cd04113 72 GAAGALLVYDITNRTSFEALPTWLSDARA--LASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGEN 149 (161)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHH--hCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence 99999999999998777765444332211 2235789999999999976443322 2222 2336799999999999
Q ss_pred HHHHHHHHHHH
Q 008468 473 IQDLETAIMKI 483 (564)
Q Consensus 473 I~eL~~~L~~~ 483 (564)
++++++++.+.
T Consensus 150 i~~~~~~~~~~ 160 (161)
T cd04113 150 VEEAFLKCARS 160 (161)
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 69
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=1.9e-19 Score=191.73 Aligned_cols=166 Identities=20% Similarity=0.229 Sum_probs=118.8
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC-eeeEEEeCCCCCCchhHHHHhhhhhhhhhhhc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG-VPVTLLDTAGIRETDDIVEKIGVERSEAVALG 397 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g-~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~ 397 (564)
..|+|+|.||||||||+|+|++.. ..++++|+||+......+.+++ ..+.++||||+.+.......++. +....+..
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~-~~l~~i~r 237 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGI-RFLKHLER 237 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHH-HHHHHHHh
Confidence 469999999999999999999876 4789999999999999988875 56999999999754322111221 22345889
Q ss_pred CcEEEEEecCCC---CCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcccC---CcEEEEeccC
Q 008468 398 ADVIIMTVSAVD---GWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGNSF---NDHVFTCAVT 469 (564)
Q Consensus 398 aD~vl~ViD~s~---~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~~~---~~~i~iSAkt 469 (564)
+|++++|+|++. .....+...|...+..+.....++|+++|+||+|+........ +.+.+.+ .+++++||++
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~t 317 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAAS 317 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 999999999872 2333333333332222111123689999999999975433221 2332221 3689999999
Q ss_pred CCCHHHHHHHHHHHhhc
Q 008468 470 GQGIQDLETAIMKIVGL 486 (564)
Q Consensus 470 g~GI~eL~~~L~~~l~~ 486 (564)
+.|+++|++.|.+.+..
T Consensus 318 g~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 318 GLGVKELCWDLMTFIEE 334 (390)
T ss_pred CcCHHHHHHHHHHHhhh
Confidence 99999999999998854
No 70
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.82 E-value=1.3e-19 Score=170.84 Aligned_cols=153 Identities=14% Similarity=0.143 Sum_probs=107.4
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCe-eEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGT-TRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gt-T~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
+||+++|++|||||||+++++...+. ..+..| ..+.....+..++ ..+.+|||+|...+.... ..++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~~ 70 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFE--KKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLR--------DGYY 70 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcccc--------HHHh
Confidence 58999999999999999999976542 223222 2333333333343 567899999987654332 2347
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhc-ccCCcEEEEeccCCCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVG-NSFNDHVFTCAVTGQG 472 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~-~~~~~~i~iSAktg~G 472 (564)
..+|++|+|+|++++.+++..+.|.. +... ..+.|+++|+||+|+........ .++. ....+++++||++|.|
T Consensus 71 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 146 (166)
T cd00877 71 IGGQCAIIMFDVTSRVTYKNVPNWHRDLVRV----CGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYN 146 (166)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 88999999999999877776654433 3322 12799999999999974332211 2222 2345799999999999
Q ss_pred HHHHHHHHHHHhh
Q 008468 473 IQDLETAIMKIVG 485 (564)
Q Consensus 473 I~eL~~~L~~~l~ 485 (564)
+++++++|.+.+.
T Consensus 147 v~~~f~~l~~~~~ 159 (166)
T cd00877 147 FEKPFLWLARKLL 159 (166)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999998774
No 71
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.82 E-value=1.4e-19 Score=173.76 Aligned_cols=154 Identities=17% Similarity=0.177 Sum_probs=114.1
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+++|++|||||||++++....+ ...+.+|..+.....+.+++. .+.||||+|...+.... ..++
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f--~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~--------~~~~ 74 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVR--------PLSY 74 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC--CCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhh--------hhhc
Confidence 48999999999999999999998875 355666655555556667664 56789999987665432 2458
Q ss_pred hcCcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCC------------Ccchh---hhhcccC
Q 008468 396 LGADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPS------------ASNEW---NKVGNSF 459 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~------------~~~~~---~~l~~~~ 459 (564)
+++|++++|||++++.+++.. ..|....... .++.|+++|+||+||... ..... +++++..
T Consensus 75 ~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~---~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 151 (182)
T cd04172 75 PDSDAVLICFDISRPETLDSVLKKWKGEIQEF---CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQI 151 (182)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH---CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHc
Confidence 999999999999999888875 4554332221 246899999999998642 11221 4444433
Q ss_pred --CcEEEEeccCCCC-HHHHHHHHHHHh
Q 008468 460 --NDHVFTCAVTGQG-IQDLETAIMKIV 484 (564)
Q Consensus 460 --~~~i~iSAktg~G-I~eL~~~L~~~l 484 (564)
.+++++||++|.| |+++|+.+.+.+
T Consensus 152 ~~~~~~E~SAk~~~n~v~~~F~~~~~~~ 179 (182)
T cd04172 152 GAATYIECSALQSENSVRDIFHVATLAC 179 (182)
T ss_pred CCCEEEECCcCCCCCCHHHHHHHHHHHH
Confidence 3799999999998 999999988753
No 72
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.82 E-value=1.5e-19 Score=172.64 Aligned_cols=152 Identities=23% Similarity=0.304 Sum_probs=114.1
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|.+|||||||+.++....+ ...+.+|..+.....+.+++ ..+.+|||+|..++.... ..+++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f--~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~--------~~~~~ 71 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLR--------PLSYR 71 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC--CCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccc--------hhhcC
Confidence 6899999999999999999998875 34555555555555566666 456799999998766542 23589
Q ss_pred cCcEEEEEecCCCCCChhHH-HHHHH-HHhccccCCCCCCEEEEEecCCCCCCCc----------chh---hhhcccC-C
Q 008468 397 GADVIIMTVSAVDGWTSEDS-ELLNR-IQSNKKSTESSTPMILVINKIDCAPSAS----------NEW---NKVGNSF-N 460 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~-~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~----------~~~---~~l~~~~-~ 460 (564)
++|++|+|||++++.+++.. +.|.. +... ..+.|+++|+||+|+.+... ... +.+.+.. .
T Consensus 72 ~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~----~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 147 (176)
T cd04133 72 GADVFVLAFSLISRASYENVLKKWVPELRHY----APNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGA 147 (176)
T ss_pred CCcEEEEEEEcCCHHHHHHHHHHHHHHHHHh----CCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCC
Confidence 99999999999999998886 44433 3322 24789999999999965421 111 3343332 3
Q ss_pred -cEEEEeccCCCCHHHHHHHHHHHh
Q 008468 461 -DHVFTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 461 -~~i~iSAktg~GI~eL~~~L~~~l 484 (564)
.++++||++|.||+++|+.+.+.+
T Consensus 148 ~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 148 AAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred CEEEECCCCcccCHHHHHHHHHHHH
Confidence 589999999999999999999876
No 73
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.82 E-value=2.5e-19 Score=167.85 Aligned_cols=154 Identities=21% Similarity=0.204 Sum_probs=112.1
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|++|||||||++++++.++. ....+....+.....+.+++ ..+.+|||+|...+.... ..+++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~--------~~~~~ 71 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFH-SSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTIT--------KQYYR 71 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhH--------HHHhc
Confidence 58999999999999999999988753 22344444555566677776 456789999986654432 24578
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTGQG 472 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg~G 472 (564)
.+|++++|||++++.++++...|...... ....+.|+++|+||+|+........ ..+.+ ...+++++||++|.|
T Consensus 72 ~~~~~i~v~d~~~~~sf~~~~~~~~~~~~--~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~ 149 (161)
T cd04117 72 RAQGIFLVYDISSERSYQHIMKWVSDVDE--YAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSN 149 (161)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHH--hCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 99999999999998787776544332221 1224689999999999976544322 23332 236799999999999
Q ss_pred HHHHHHHHHHH
Q 008468 473 IQDLETAIMKI 483 (564)
Q Consensus 473 I~eL~~~L~~~ 483 (564)
++++|++|.+.
T Consensus 150 v~~~f~~l~~~ 160 (161)
T cd04117 150 IKESFTRLTEL 160 (161)
T ss_pred HHHHHHHHHhh
Confidence 99999999764
No 74
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.82 E-value=1.3e-19 Score=168.36 Aligned_cols=153 Identities=18% Similarity=0.189 Sum_probs=103.3
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCc
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGAD 399 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD 399 (564)
+|+++|++|||||||+++|.+.... ...+.+|. ......+..++..+.+|||||...+...++ .++..+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~-~~~~~~t~-g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~--------~~~~~~d 70 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQ-SQIIVPTV-GFNVESFEKGNLSFTAFDMSGQGKYRGLWE--------HYYKNIQ 70 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCC-cceecCcc-ccceEEEEECCEEEEEEECCCCHhhHHHHH--------HHHccCC
Confidence 5899999999999999999987531 22222221 122233456788899999999876655433 4578999
Q ss_pred EEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhh--cc---cCCcEEEEeccCCC
Q 008468 400 VIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKV--GN---SFNDHVFTCAVTGQ 471 (564)
Q Consensus 400 ~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l--~~---~~~~~i~iSAktg~ 471 (564)
++++|+|++++.++.... .+..+.........+.|+++|+||+|+.+...... +.+ .. ...+++++||++|.
T Consensus 71 ~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~ 150 (162)
T cd04157 71 GIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGE 150 (162)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCC
Confidence 999999999876554432 23333332111234789999999999976433221 111 11 11247899999999
Q ss_pred CHHHHHHHHHH
Q 008468 472 GIQDLETAIMK 482 (564)
Q Consensus 472 GI~eL~~~L~~ 482 (564)
|+++++++|.+
T Consensus 151 gv~~~~~~l~~ 161 (162)
T cd04157 151 GLDEGVQWLQA 161 (162)
T ss_pred chHHHHHHHhc
Confidence 99999999864
No 75
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.82 E-value=1e-19 Score=189.91 Aligned_cols=164 Identities=22% Similarity=0.232 Sum_probs=119.3
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC-eeeEEEeCCCCCCchhHHHHhhhhhhhhhhhc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG-VPVTLLDTAGIRETDDIVEKIGVERSEAVALG 397 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g-~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~ 397 (564)
..|+|+|.||||||||+|+|++... .++++|+||.......+.+++ ..+.+|||||+.+.......++ ......+..
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~-~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg-~~flrhier 235 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLG-HRFLKHIER 235 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCc-cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHH-HHHHHHHHh
Confidence 5799999999999999999998764 578999999998888888877 8999999999975332111111 122344678
Q ss_pred CcEEEEEecCCCC---CChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhccc-CCcEEEEeccCCC
Q 008468 398 ADVIIMTVSAVDG---WTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGNS-FNDHVFTCAVTGQ 471 (564)
Q Consensus 398 aD~vl~ViD~s~~---~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~~-~~~~i~iSAktg~ 471 (564)
+|++++|+|+++. ...++...|...+..+.....++|+++|+||+|+........ +.+.+. ..+++++||+++.
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGE 315 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCc
Confidence 9999999999875 344455444433322222224689999999999976533221 233322 2478999999999
Q ss_pred CHHHHHHHHHHHh
Q 008468 472 GIQDLETAIMKIV 484 (564)
Q Consensus 472 GI~eL~~~L~~~l 484 (564)
|+++++++|.+.+
T Consensus 316 GI~eL~~~I~~~l 328 (329)
T TIGR02729 316 GLDELLYALAELL 328 (329)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998764
No 76
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.82 E-value=1.6e-19 Score=170.83 Aligned_cols=153 Identities=18% Similarity=0.217 Sum_probs=107.4
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
...++|+++|++|||||||+++|.+.... .+..| .......+.+++..+.+|||||...+...+ ..++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~---~~~~t-~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~--------~~~~ 79 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID---TISPT-LGFQIKTLEYEGYKLNIWDVGGQKTLRPYW--------RNYF 79 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC---CcCCc-cccceEEEEECCEEEEEEECCCCHHHHHHH--------HHHh
Confidence 34589999999999999999999987543 22222 223344566678899999999986554332 3457
Q ss_pred hcCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhc------ccCCcEEEEec
Q 008468 396 LGADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVG------NSFNDHVFTCA 467 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~------~~~~~~i~iSA 467 (564)
..+|++++|+|++++.++.+.. .+..+... ....+.|+++|+||+|+........ +++. ....+++++||
T Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (173)
T cd04154 80 ESTDALIWVVDSSDRLRLDDCKRELKELLQE--ERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSA 157 (173)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHhC--hhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccC
Confidence 8999999999999876655442 23333321 1234789999999999976432222 2221 22347999999
Q ss_pred cCCCCHHHHHHHHHH
Q 008468 468 VTGQGIQDLETAIMK 482 (564)
Q Consensus 468 ktg~GI~eL~~~L~~ 482 (564)
++|.|++++++++.+
T Consensus 158 ~~g~gi~~l~~~l~~ 172 (173)
T cd04154 158 VTGEGLLQGIDWLVD 172 (173)
T ss_pred CCCcCHHHHHHHHhc
Confidence 999999999998853
No 77
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.82 E-value=3.1e-19 Score=166.08 Aligned_cols=155 Identities=19% Similarity=0.204 Sum_probs=112.7
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|++|||||||++++++.... ....+..+.+.....+.+++ ..+.+|||||...+... ...++.
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~~~ 71 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFS-EQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSI--------TSSYYR 71 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHH--------HHHHhC
Confidence 58999999999999999999988752 33445555555566667776 56789999997554433 234578
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTGQ 471 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg~ 471 (564)
.+|++++|+|++++.+.+....|.. +... ...+.|+++|+||+|+........ +.+.. ...+++++||++|.
T Consensus 72 ~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~---~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 148 (164)
T smart00175 72 GAVGALLVYDITNRESFENLKNWLKELREY---ADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNT 148 (164)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHh---CCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 8999999999998777766544433 2222 124789999999999876432221 22222 33579999999999
Q ss_pred CHHHHHHHHHHHhh
Q 008468 472 GIQDLETAIMKIVG 485 (564)
Q Consensus 472 GI~eL~~~L~~~l~ 485 (564)
|++++++.|.+.+.
T Consensus 149 ~i~~l~~~i~~~~~ 162 (164)
T smart00175 149 NVEEAFEELAREIL 162 (164)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988763
No 78
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.82 E-value=2.9e-19 Score=168.31 Aligned_cols=154 Identities=18% Similarity=0.168 Sum_probs=110.5
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+|+|++|||||||+|++++.++.. ...+..+.+.....+.+++ ..+.+|||||...+... ...+++
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~ 75 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSI--------TRSYYR 75 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH--------HHHHhc
Confidence 799999999999999999999887532 2223334455455556665 56789999997544332 234578
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhc-ccCCcEEEEeccCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVG-NSFNDHVFTCAVTGQ 471 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~-~~~~~~i~iSAktg~ 471 (564)
.+|++++|+|++++.++.+...|.. +... ..++.|+++|+||+|+........ +.+. .....++++||++|.
T Consensus 76 ~~d~il~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 152 (168)
T cd01866 76 GAAGALLVYDITRRETFNHLTSWLEDARQH---SNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTAS 152 (168)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHh---CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 9999999999998777766644433 2221 235789999999999975433322 2222 234579999999999
Q ss_pred CHHHHHHHHHHHh
Q 008468 472 GIQDLETAIMKIV 484 (564)
Q Consensus 472 GI~eL~~~L~~~l 484 (564)
|++++++.+.+.+
T Consensus 153 ~i~~~~~~~~~~~ 165 (168)
T cd01866 153 NVEEAFINTAKEI 165 (168)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998876
No 79
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=1.5e-19 Score=195.99 Aligned_cols=166 Identities=19% Similarity=0.201 Sum_probs=121.1
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGA 398 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~a 398 (564)
.+|+|+|.||||||||+|+|++... .++++|+||++.....+.+++..+.+|||||+.+.......++.. ....+..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akp-kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~-fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKP-KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLD-FLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCc-cccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHH-HHHHHHhc
Confidence 6899999999999999999999865 469999999999999999999999999999997543322223222 23457889
Q ss_pred cEEEEEecCCCC----CChhHHHHHHH-HHhcccc--------CCCCCCEEEEEecCCCCCCCcchh---hhhcccCCcE
Q 008468 399 DVIIMTVSAVDG----WTSEDSELLNR-IQSNKKS--------TESSTPMILVINKIDCAPSASNEW---NKVGNSFNDH 462 (564)
Q Consensus 399 D~vl~ViD~s~~----~s~~~~~~l~~-l~~~~~~--------~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~~~~~~ 462 (564)
|++|+|+|+++. ....+...+.. +...... ...++|+|+|+||+|+.+...... +.+.....++
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~V 317 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPV 317 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeE
Confidence 999999999752 22334433332 2221100 123689999999999975433221 2233333579
Q ss_pred EEEeccCCCCHHHHHHHHHHHhhc
Q 008468 463 VFTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 463 i~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
++|||+++.|+++|+++|.+.+..
T Consensus 318 f~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 318 FEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999988753
No 80
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.82 E-value=1.7e-19 Score=171.56 Aligned_cols=152 Identities=24% Similarity=0.269 Sum_probs=110.8
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|.+|||||||+.+++...+ +..+.+|..+.....+.+++ ..+.+|||||...+.... ..++.
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~~~ 71 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR--------PLSYP 71 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhh--------hhhcC
Confidence 6899999999999999999998764 35555565555555566666 456789999987664432 23578
Q ss_pred cCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCc------------chh---hhhcccC-
Q 008468 397 GADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSAS------------NEW---NKVGNSF- 459 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~------------~~~---~~l~~~~- 459 (564)
++|++|+|||++++.++.+.. .|....... ..+.|+++|+||+|+.+... ... .++...+
T Consensus 72 ~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~---~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 148 (174)
T cd01871 72 QTDVFLICFSLVSPASFENVRAKWYPEVRHH---CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 148 (174)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 999999999999988887763 454333221 24789999999999964321 111 2233322
Q ss_pred -CcEEEEeccCCCCHHHHHHHHHHH
Q 008468 460 -NDHVFTCAVTGQGIQDLETAIMKI 483 (564)
Q Consensus 460 -~~~i~iSAktg~GI~eL~~~L~~~ 483 (564)
.+++++||++|.|++++|+.+.+.
T Consensus 149 ~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 149 AVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred CcEEEEecccccCCHHHHHHHHHHh
Confidence 378999999999999999998763
No 81
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.82 E-value=1.9e-19 Score=172.15 Aligned_cols=153 Identities=18% Similarity=0.169 Sum_probs=111.6
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|++|||||||++++.+..+ ...+.+|..+.....+.+++. .+.+|||+|...+.... ..+++
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~--------~~~~~ 71 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY--PETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVR--------PLCYP 71 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC--CCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcc--------hhhcC
Confidence 6899999999999999999998875 355555554544556667664 46789999986654332 24588
Q ss_pred cCcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCC------------Ccchh---hhhcccC-
Q 008468 397 GADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPS------------ASNEW---NKVGNSF- 459 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~------------~~~~~---~~l~~~~- 459 (564)
.+|++|+|||++++.++++. ..|....... .++.|+++|+||+||... ..... +++++..
T Consensus 72 ~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~---~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~ 148 (178)
T cd04131 72 DSDAVLICFDISRPETLDSVLKKWRGEIQEF---CPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLG 148 (178)
T ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHHH---CCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhC
Confidence 99999999999999888874 4454322221 247899999999999642 11111 3444433
Q ss_pred -CcEEEEeccCCCC-HHHHHHHHHHHh
Q 008468 460 -NDHVFTCAVTGQG-IQDLETAIMKIV 484 (564)
Q Consensus 460 -~~~i~iSAktg~G-I~eL~~~L~~~l 484 (564)
.+++++||++|.| |+++|..+.+..
T Consensus 149 ~~~~~E~SA~~~~~~v~~~F~~~~~~~ 175 (178)
T cd04131 149 AEIYLECSAFTSEKSVRDIFHVATMAC 175 (178)
T ss_pred CCEEEECccCcCCcCHHHHHHHHHHHH
Confidence 3689999999995 999999998853
No 82
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.82 E-value=2.8e-19 Score=172.65 Aligned_cols=156 Identities=22% Similarity=0.237 Sum_probs=114.4
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+++|..|||||||++++....+. ..+.+|..+.....+.+++ ..+.+|||+|...+.... ..++
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~--------~~~~ 72 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFP--KEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLR--------TLSY 72 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCC--cCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhh--------hhhc
Confidence 379999999999999999999987752 4455555454444556666 456789999997765442 2458
Q ss_pred hcCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCc------------chh---hhhcccC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSAS------------NEW---NKVGNSF 459 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~------------~~~---~~l~~~~ 459 (564)
+++|++|+|||++++.+++... .|...... ...+.|+++|+||+||..... ... +.+.+..
T Consensus 73 ~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~---~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 149 (191)
T cd01875 73 PQTNVFIICFSIASPSSYENVRHKWHPEVCH---HCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQI 149 (191)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHh---hCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 8999999999999988888774 45432221 124789999999999965421 111 2333322
Q ss_pred --CcEEEEeccCCCCHHHHHHHHHHHhhc
Q 008468 460 --NDHVFTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 460 --~~~i~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
.+++++||++|.||+++|+.+.+.+..
T Consensus 150 ~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 150 HAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 479999999999999999999987754
No 83
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.82 E-value=3.1e-19 Score=165.79 Aligned_cols=155 Identities=23% Similarity=0.233 Sum_probs=113.2
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|++|||||||+++++...+ +..+.+++.+.......+++ ..+.+|||||..++.... ..+++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~~ 70 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIR--------DNYHR 70 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--ccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHH--------HHHhh
Confidence 5899999999999999999998764 45677777666666666665 457899999987655442 24578
Q ss_pred cCcEEEEEecCCCCCChhHHHH-HHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSEL-LNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTGQ 471 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~-l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg~ 471 (564)
.+|++++|+|++++.++..... +..+..... ..+.|+++|+||+|+........ ..+.. ...+++++||++|.
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (164)
T cd04139 71 SGEGFLLVFSITDMESFTATAEFREQILRVKD--DDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQ 148 (164)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCC
Confidence 9999999999988766655433 333333211 34789999999999976322221 22222 23579999999999
Q ss_pred CHHHHHHHHHHHhh
Q 008468 472 GIQDLETAIMKIVG 485 (564)
Q Consensus 472 GI~eL~~~L~~~l~ 485 (564)
|++++++.+.+.+.
T Consensus 149 gi~~l~~~l~~~~~ 162 (164)
T cd04139 149 NVEKAFYDLVREIR 162 (164)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987653
No 84
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.82 E-value=2.8e-19 Score=170.16 Aligned_cols=154 Identities=21% Similarity=0.243 Sum_probs=107.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+.+||+++|.+|||||||++++...++ ....|.+..+. ..+..++..+.+|||||...+...+ ..+++
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~--~~~~~t~~~~~--~~~~~~~~~l~l~D~~G~~~~~~~~--------~~~~~ 79 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGES--VTTIPTIGFNV--ETVTYKNISFTVWDVGGQDKIRPLW--------RHYYT 79 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCC--CCcCCccccce--EEEEECCEEEEEEECCCChhhHHHH--------HHHhC
Confidence 358999999999999999999976554 23334333333 2455678899999999987655443 34589
Q ss_pred cCcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhh-----cccCCcEEEEecc
Q 008468 397 GADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKV-----GNSFNDHVFTCAV 468 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l-----~~~~~~~i~iSAk 468 (564)
++|++|+|+|++++.+..+. +.+..+.... ...+.|+++|+||+|+........ +.+ ......++++||+
T Consensus 80 ~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~--~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 157 (175)
T smart00177 80 NTQGLIFVVDSNDRDRIDEAREELHRMLNED--ELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCAT 157 (175)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHhhCH--hhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCC
Confidence 99999999999987665543 3344443221 124689999999999975432221 111 1112246789999
Q ss_pred CCCCHHHHHHHHHHHh
Q 008468 469 TGQGIQDLETAIMKIV 484 (564)
Q Consensus 469 tg~GI~eL~~~L~~~l 484 (564)
+|.|+++++++|.+.+
T Consensus 158 ~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 158 SGDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998764
No 85
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.82 E-value=2.9e-19 Score=176.50 Aligned_cols=152 Identities=19% Similarity=0.219 Sum_probs=109.6
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGA 398 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~a 398 (564)
+||+++|.+|||||||+++++..++. ...+.+..+.. ...+....+.||||||...+.... ..+++.+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~--~~~~Tig~~~~--~~~~~~~~l~iwDt~G~e~~~~l~--------~~~~~~a 68 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFK--DTVSTVGGAFY--LKQWGPYNISIWDTAGREQFHGLG--------SMYCRGA 68 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC--CCCCccceEEE--EEEeeEEEEEEEeCCCcccchhhH--------HHHhccC
Confidence 58999999999999999999998763 23333333332 233456778999999997765543 2448899
Q ss_pred cEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCC-------------------CCcchh---hhh
Q 008468 399 DVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAP-------------------SASNEW---NKV 455 (564)
Q Consensus 399 D~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~-------------------~~~~~~---~~l 455 (564)
|++|+|||+++..++.+.. .|..+... ...+.|+|+|+||+|+.. ...... ..+
T Consensus 69 d~~IlV~Dvt~~~Sf~~l~~~~~~l~~~---~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~ 145 (220)
T cd04126 69 AAVILTYDVSNVQSLEELEDRFLGLTDT---ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAF 145 (220)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHH
Confidence 9999999999988888764 34434332 234689999999999965 111111 223
Q ss_pred cccC---------------CcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 456 GNSF---------------NDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 456 ~~~~---------------~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
.+.. .+++++||++|.||+++|+.+.+.+.
T Consensus 146 a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 146 YKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred HHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 3221 36899999999999999999998764
No 86
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.82 E-value=3e-19 Score=168.63 Aligned_cols=152 Identities=16% Similarity=0.150 Sum_probs=106.9
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCc
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGAD 399 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD 399 (564)
||+++|.+|||||||+++|.+..+ ....| |.......+..++..+.+|||||...+...+ ..++..+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~~~~--T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~--------~~~~~~ad 68 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQPIP--TIGFNVETVEYKNLKFTIWDVGGKHKLRPLW--------KHYYLNTQ 68 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CCcCC--cCceeEEEEEECCEEEEEEECCCChhcchHH--------HHHhccCC
Confidence 689999999999999999998754 23222 3333334567788999999999987654443 34578999
Q ss_pred EEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhcc--c-----CCcEEEEeccCC
Q 008468 400 VIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGN--S-----FNDHVFTCAVTG 470 (564)
Q Consensus 400 ~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~--~-----~~~~i~iSAktg 470 (564)
++++|+|++++.+..+.. .+..+.... ...+.|+++|+||+|+......+. .++.. . ...++++||++|
T Consensus 69 ~ii~V~D~s~~~s~~~~~~~~~~~~~~~--~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 146 (169)
T cd04158 69 AVVFVVDSSHRDRVSEAHSELAKLLTEK--ELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSG 146 (169)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHhcCh--hhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCC
Confidence 999999999876665543 233333221 123579999999999975433222 22221 1 124778999999
Q ss_pred CCHHHHHHHHHHHhh
Q 008468 471 QGIQDLETAIMKIVG 485 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~ 485 (564)
.|++++|++|.+.+.
T Consensus 147 ~gv~~~f~~l~~~~~ 161 (169)
T cd04158 147 MGLYEGLDWLSRQLV 161 (169)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999988664
No 87
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.82 E-value=2.1e-19 Score=168.27 Aligned_cols=150 Identities=20% Similarity=0.235 Sum_probs=103.6
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGA 398 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~a 398 (564)
+||+++|.+|||||||++++...++. ...|.+..+ ...+..+...+.+|||||+..+...+ ..+++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~--~~~pt~g~~--~~~~~~~~~~~~l~D~~G~~~~~~~~--------~~~~~~a 68 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFN--VETVEYKNISFTVWDVGGQDKIRPLW--------RHYFQNT 68 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--ccCCCCCcc--eEEEEECCEEEEEEECCCCHhHHHHH--------HHHhcCC
Confidence 58999999999999999999766543 333332222 23456678899999999986654432 3458999
Q ss_pred cEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhc-----ccCCcEEEEeccCC
Q 008468 399 DVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVG-----NSFNDHVFTCAVTG 470 (564)
Q Consensus 399 D~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~-----~~~~~~i~iSAktg 470 (564)
|++++|+|+++..+..+.. .+..+.... .....|+++|+||+|+........ +.+. .....++++||++|
T Consensus 69 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~--~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g 146 (159)
T cd04150 69 QGLIFVVDSNDRERIGEAREELQRMLNED--ELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSG 146 (159)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhcH--HhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCC
Confidence 9999999999876655442 333333221 123589999999999965432211 2221 11224679999999
Q ss_pred CCHHHHHHHHHH
Q 008468 471 QGIQDLETAIMK 482 (564)
Q Consensus 471 ~GI~eL~~~L~~ 482 (564)
.|+++++++|.+
T Consensus 147 ~gv~~~~~~l~~ 158 (159)
T cd04150 147 DGLYEGLDWLSN 158 (159)
T ss_pred CCHHHHHHHHhc
Confidence 999999998853
No 88
>PLN03118 Rab family protein; Provisional
Probab=99.82 E-value=3.2e-19 Score=174.77 Aligned_cols=159 Identities=19% Similarity=0.138 Sum_probs=114.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+||+|+|++|||||||+++|++..+.. ..+.++.+.....+.+++ ..+.||||||...+..... .+
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~--------~~ 82 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVED--LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTS--------SY 82 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCC--cCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHH--------HH
Confidence 35899999999999999999999887532 223334445445556665 4678999999877655432 45
Q ss_pred hhcCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhc-ccCCcEEEEeccC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVG-NSFNDHVFTCAVT 469 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~-~~~~~~i~iSAkt 469 (564)
++.+|++++|+|.++..++.+.. .|........ ...+.|+++|+||+|+........ ..+. .....++++||++
T Consensus 83 ~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~-~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~ 161 (211)
T PLN03118 83 YRNAQGIILVYDVTRRETFTNLSDVWGKEVELYS-TNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKT 161 (211)
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 78999999999999987777663 3544333211 123579999999999976544322 1222 2335689999999
Q ss_pred CCCHHHHHHHHHHHhhc
Q 008468 470 GQGIQDLETAIMKIVGL 486 (564)
Q Consensus 470 g~GI~eL~~~L~~~l~~ 486 (564)
|.|+++++++|.+.+..
T Consensus 162 ~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 162 RENVEQCFEELALKIME 178 (211)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999988743
No 89
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.82 E-value=3e-19 Score=166.31 Aligned_cols=154 Identities=22% Similarity=0.233 Sum_probs=108.1
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|++|||||||+|+|++.++.. ...+.+..+.....+.+++ ..+.+|||||...+... ...+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~ 72 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE-NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSL--------APMYYR 72 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHH--------HHHHhc
Confidence 799999999999999999999987542 2223333334444555554 56789999997544332 234578
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhc-ccCCcEEEEeccCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVG-NSFNDHVFTCAVTGQ 471 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~-~~~~~~i~iSAktg~ 471 (564)
.+|++++|+|++++.+......|.. +... ...+.|+++|+||+|+........ ..+. ....+++++||++|.
T Consensus 73 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 149 (163)
T cd01860 73 GAAAAIVVYDITSEESFEKAKSWVKELQRN---ASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGE 149 (163)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHh---CCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCC
Confidence 8999999999998766665544433 3322 125789999999999875433222 1222 223679999999999
Q ss_pred CHHHHHHHHHHHh
Q 008468 472 GIQDLETAIMKIV 484 (564)
Q Consensus 472 GI~eL~~~L~~~l 484 (564)
|+++++++|.+.+
T Consensus 150 ~v~~l~~~l~~~l 162 (163)
T cd01860 150 NVNELFTEIAKKL 162 (163)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998764
No 90
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.81 E-value=1.6e-19 Score=169.14 Aligned_cols=155 Identities=23% Similarity=0.260 Sum_probs=110.6
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCc-hhHHHHhhhhhhhhhhh
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRET-DDIVEKIGVERSEAVAL 396 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~-~~~ie~~~i~~~~~~l~ 396 (564)
||+++|++|||||||+++++...+ ...+++++.......+.+++. .+.+|||||.... ... ...+++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~~~ 70 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQ--------LERSIR 70 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccch--------HHHHHH
Confidence 589999999999999999998654 456666664444555566665 4679999998742 222 123478
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC-C
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG-Q 471 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg-~ 471 (564)
.+|++++|+|++++.+++....|............+.|+++|+||+|+........ ..+.+ ...+++++||++| .
T Consensus 71 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~ 150 (165)
T cd04146 71 WADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYD 150 (165)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCch
Confidence 89999999999998777766555443332221134789999999999865433222 22322 2357899999999 5
Q ss_pred CHHHHHHHHHHHh
Q 008468 472 GIQDLETAIMKIV 484 (564)
Q Consensus 472 GI~eL~~~L~~~l 484 (564)
|++++|+.+.+.+
T Consensus 151 ~v~~~f~~l~~~~ 163 (165)
T cd04146 151 GVHSVFHELCREV 163 (165)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999998765
No 91
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.81 E-value=2.4e-19 Score=167.84 Aligned_cols=153 Identities=18% Similarity=0.226 Sum_probs=105.2
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcc---eeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERA---IVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~---~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+|+++|++|||||||+|+|.+.... .......+|.......+.+++..+.+|||||+..+.... ..++.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~~~ 72 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLW--------DKYYA 72 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHH--------HHHhC
Confidence 5899999999999999999875321 111122344444455677788999999999987654432 24588
Q ss_pred cCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhh-cc-------cCCcEEEEe
Q 008468 397 GADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKV-GN-------SFNDHVFTC 466 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l-~~-------~~~~~i~iS 466 (564)
.+|++++|+|++++.+..... .+..+.... ...+.|+++|+||+|+........ ..+ .. ...+++++|
T Consensus 73 ~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~--~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 150 (167)
T cd04160 73 ECHAIIYVIDSTDRERFEESKSALEKVLRNE--ALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVS 150 (167)
T ss_pred CCCEEEEEEECchHHHHHHHHHHHHHHHhCh--hhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEee
Confidence 999999999998765444332 233333221 124689999999999876533222 111 11 124689999
Q ss_pred ccCCCCHHHHHHHHHH
Q 008468 467 AVTGQGIQDLETAIMK 482 (564)
Q Consensus 467 Aktg~GI~eL~~~L~~ 482 (564)
|++|.|+++++++|.+
T Consensus 151 a~~g~gv~e~~~~l~~ 166 (167)
T cd04160 151 ALEGTGVREGIEWLVE 166 (167)
T ss_pred CCCCcCHHHHHHHHhc
Confidence 9999999999999864
No 92
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.81 E-value=2.7e-19 Score=169.21 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=111.0
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeE-EEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTR-DVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSE 392 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~-d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~ 392 (564)
|+.+||+++|.+|||||||++++++..+. +..+.+|+. +.....+.+++ ..+.+|||+|...+... ..
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~--------~~ 72 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILL--------ND 72 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCccccccc--------ch
Confidence 45689999999999999999999998753 245555543 33445566677 45778999998765432 22
Q ss_pred hhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcc---hhhhhcccC--CcEEEEec
Q 008468 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN---EWNKVGNSF--NDHVFTCA 467 (564)
Q Consensus 393 ~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~---~~~~l~~~~--~~~i~iSA 467 (564)
.++.++|++++|+|++++.+++....|..... ...+.|+++|+||+|+.+.... ..+++.+.+ ..++++||
T Consensus 73 ~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~----~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (169)
T cd01892 73 AELAACDVACLVYDSSDPKSFSYCAEVYKKYF----MLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSS 148 (169)
T ss_pred hhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhc----cCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEe
Confidence 44789999999999988755554432222111 1236899999999999654322 113343322 24699999
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 008468 468 VTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 468 ktg~GI~eL~~~L~~~l~ 485 (564)
++|.|++++++.+.+.+.
T Consensus 149 ~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 149 KLGDSSNELFTKLATAAQ 166 (169)
T ss_pred ccCccHHHHHHHHHHHhh
Confidence 999999999999998764
No 93
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=4.3e-19 Score=166.29 Aligned_cols=159 Identities=17% Similarity=0.200 Sum_probs=125.4
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCee--eEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVP--VTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~--i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+++|+.+||||||++++..+.+. .+..+....|+....+.+.|.+ +.||||+|++.+..++. .|+
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~fd-~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslip--------sY~ 92 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP--------SYI 92 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhhc-ccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhh--------hhc
Confidence 389999999999999999999998764 2444666789999999998865 56899999998887754 459
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcchh---hh-hcccCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNEW---NK-VGNSFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~-l~~~~~~~i~iSAktg 470 (564)
++++++|+|||+++..++++...|- .+..... ..++-+++|+||.||.+..+... +. .++....++++||+.|
T Consensus 93 Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~g--s~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g 170 (221)
T KOG0094|consen 93 RDSSVAVIVYDITDRNSFENTSKWIEDVRRERG--SDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAG 170 (221)
T ss_pred cCCeEEEEEEeccccchHHHHHHHHHHHHhccC--CCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCC
Confidence 9999999999999999998875443 4444322 12366889999999998866554 21 2223357899999999
Q ss_pred CCHHHHHHHHHHHhhcc
Q 008468 471 QGIQDLETAIMKIVGLH 487 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~~~ 487 (564)
.||.++|..|...+...
T Consensus 171 ~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 171 ENVKQLFRRIAAALPGM 187 (221)
T ss_pred CCHHHHHHHHHHhccCc
Confidence 99999999998887543
No 94
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.81 E-value=4.1e-19 Score=168.34 Aligned_cols=151 Identities=20% Similarity=0.256 Sum_probs=105.3
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCccee--------------ccccCeeEEEEEEEEEE-----CCeeeEEEeCCCCCCch
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIV--------------TEIAGTTRDVIEASVTV-----CGVPVTLLDTAGIRETD 380 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~v--------------s~~~gtT~d~~~~~~~~-----~g~~i~LiDTpG~~~~~ 380 (564)
+|+++|++|||||||+++|++....+. ....++|.......+.+ .+..+.+|||||+.++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 589999999999999999998532110 11223444433333333 35668899999997765
Q ss_pred hHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhccc-
Q 008468 381 DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGNS- 458 (564)
Q Consensus 381 ~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~~- 458 (564)
... ..++..+|++|+|+|++++.+.++...|..+.. .++|+++|+||+|+........ +++.+.
T Consensus 82 ~~~--------~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~ 147 (179)
T cd01890 82 YEV--------SRSLAACEGALLLVDATQGVEAQTLANFYLALE------NNLEIIPVINKIDLPSADPERVKQQIEDVL 147 (179)
T ss_pred HHH--------HHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH------cCCCEEEEEECCCCCcCCHHHHHHHHHHHh
Confidence 442 345788999999999998877766665554432 3679999999999865332111 222221
Q ss_pred ---CCcEEEEeccCCCCHHHHHHHHHHHh
Q 008468 459 ---FNDHVFTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 459 ---~~~~i~iSAktg~GI~eL~~~L~~~l 484 (564)
...++++||++|.|+++++++|.+.+
T Consensus 148 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 148 GLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred CCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 12589999999999999999998765
No 95
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.81 E-value=5.6e-19 Score=166.13 Aligned_cols=157 Identities=17% Similarity=0.170 Sum_probs=110.8
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+++|++|||||||++++++..+. ....+..+.+.....+.+++. .+.||||||...+.... ..++
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~~~ 75 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFD-TQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLR--------TPFY 75 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCC-cCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhH--------HHHh
Confidence 389999999999999999999987653 233444445555556666664 56789999986554432 2457
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHH-HHhcccc-CCCCCCEEEEEecCCCCCCCcchh--hhhcccC--CcEEEEeccC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKS-TESSTPMILVINKIDCAPSASNEW--NKVGNSF--NDHVFTCAVT 469 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~-~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~~~--~~~i~iSAkt 469 (564)
+.+|++++|+|++++.+++....|.. +...... ...+.|+++|+||+|+........ +++.+.+ .+++++||++
T Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 155 (170)
T cd04116 76 RGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKD 155 (170)
T ss_pred cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCC
Confidence 89999999999999877776654433 3322111 124689999999999963222111 3333322 4789999999
Q ss_pred CCCHHHHHHHHHHH
Q 008468 470 GQGIQDLETAIMKI 483 (564)
Q Consensus 470 g~GI~eL~~~L~~~ 483 (564)
|.|+.++++.+.+.
T Consensus 156 ~~~v~~~~~~~~~~ 169 (170)
T cd04116 156 ATNVAAAFEEAVRR 169 (170)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998764
No 96
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.81 E-value=6.7e-19 Score=171.04 Aligned_cols=155 Identities=22% Similarity=0.197 Sum_probs=112.3
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+|+|++|||||||++++.+..+. ....+..+.+.....+.+++ ..+.||||||...+.... ..++
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~--------~~~~ 76 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTIT--------STYY 76 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHH--------HHHh
Confidence 489999999999999999999988753 12233334455555666666 457899999986654432 3457
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhc-ccCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVG-NSFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~-~~~~~~i~iSAktg 470 (564)
..+|++++|+|++++.++.+...|.. +.. .....|+++|+||+|+........ ..+. ....+++++||++|
T Consensus 77 ~~a~~iilv~D~~~~~s~~~~~~~~~~i~~----~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 152 (199)
T cd04110 77 RGTHGVIVVYDVTNGESFVNVKRWLQEIEQ----NCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKEN 152 (199)
T ss_pred CCCcEEEEEEECCCHHHHHHHHHHHHHHHH----hCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCC
Confidence 88999999999999877766544433 322 234689999999999976543322 2222 22357999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 008468 471 QGIQDLETAIMKIVG 485 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~ 485 (564)
.||++++++|.+.+.
T Consensus 153 ~gi~~lf~~l~~~~~ 167 (199)
T cd04110 153 INVEEMFNCITELVL 167 (199)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999998774
No 97
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.81 E-value=1.2e-19 Score=168.30 Aligned_cols=161 Identities=19% Similarity=0.184 Sum_probs=122.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCee--eEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVP--VTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~--i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+||.|+|++|||||||+|++..+++.. .......-|+..+.+.+++.. +.||||+|++.+..+. ..+
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~-qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg--------~aF 78 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQ-QYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLG--------VAF 78 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHH-HhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcc--------cce
Confidence 44899999999999999999999988641 223344557777778888754 5689999998776542 245
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHH-HHhccc-cCCCCCCEEEEEecCCCCCCC--cchh---hhhcc--cCCcEEEE
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNR-IQSNKK-STESSTPMILVINKIDCAPSA--SNEW---NKVGN--SFNDHVFT 465 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~-~~~~~~PvIvV~NK~DL~~~~--~~~~---~~l~~--~~~~~i~i 465 (564)
++.||++++|||+.++.+++.++.|+. ++.... ..+...|+|+++||+|+.... .... +.+.. ...+||++
T Consensus 79 YRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEt 158 (210)
T KOG0394|consen 79 YRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFET 158 (210)
T ss_pred ecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEe
Confidence 899999999999999999999988876 222222 223567999999999997643 2222 33332 34789999
Q ss_pred eccCCCCHHHHHHHHHHHhhc
Q 008468 466 CAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 466 SAktg~GI~eL~~~L~~~l~~ 486 (564)
|||.+.||++.|+.+.+.+..
T Consensus 159 SAK~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 159 SAKEATNVDEAFEEIARRALA 179 (210)
T ss_pred cccccccHHHHHHHHHHHHHh
Confidence 999999999999999887643
No 98
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.81 E-value=5.1e-19 Score=166.54 Aligned_cols=154 Identities=19% Similarity=0.229 Sum_probs=114.0
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|++|||||||++++.+..+ ...+.+|+.+.....+.+++ ..+.+|||||...+....+ .+++
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--------~~~~ 71 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF--IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRE--------LYIK 71 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhH--------HHHh
Confidence 6899999999999999999998764 35566666655556666666 4678999999987765543 3478
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhccc--CCcEEEEeccCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGNS--FNDHVFTCAVTG 470 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~~--~~~~i~iSAktg 470 (564)
.+|++++|+|.+++.+.+....|.. +.... ...+.|+++|+||+|+........ ..+... ..+++++||++|
T Consensus 72 ~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~--~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 149 (168)
T cd04177 72 SGQGFLLVYSVTSEASLNELGELREQVLRIK--DSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKR 149 (168)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCC
Confidence 8999999999998777766654443 22211 234789999999999976543322 122222 257999999999
Q ss_pred CCHHHHHHHHHHHh
Q 008468 471 QGIQDLETAIMKIV 484 (564)
Q Consensus 471 ~GI~eL~~~L~~~l 484 (564)
.|++++++++.+.+
T Consensus 150 ~~i~~~f~~i~~~~ 163 (168)
T cd04177 150 TNVDEVFIDLVRQI 163 (168)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998754
No 99
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.81 E-value=1.4e-19 Score=170.45 Aligned_cols=159 Identities=30% Similarity=0.285 Sum_probs=111.8
Q ss_pred EEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEEC-CeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEE
Q 008468 323 IVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC-GVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVI 401 (564)
Q Consensus 323 IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~-g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~v 401 (564)
|+|++|||||||+|+|++.+. .+++++++|.+.....+.++ +.++.+|||||+.+.....+.. .......+..+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~-~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGL-GNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCc-cHHHHHHHhccCEE
Confidence 589999999999999999876 57888999988887778888 9999999999985322111111 11223457789999
Q ss_pred EEEecCCCCC------ChhHHHHHHHHHhccccC-----CCCCCEEEEEecCCCCCCCcchhh----hhcccCCcEEEEe
Q 008468 402 IMTVSAVDGW------TSEDSELLNRIQSNKKST-----ESSTPMILVINKIDCAPSASNEWN----KVGNSFNDHVFTC 466 (564)
Q Consensus 402 l~ViD~s~~~------s~~~~~~l~~l~~~~~~~-----~~~~PvIvV~NK~DL~~~~~~~~~----~l~~~~~~~i~iS 466 (564)
++|+|+++.. +..+...+.......... ..++|+++|+||+|+......... .......+++++|
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 9999998873 344444333322211100 136899999999999765443321 1122345799999
Q ss_pred ccCCCCHHHHHHHHHHH
Q 008468 467 AVTGQGIQDLETAIMKI 483 (564)
Q Consensus 467 Aktg~GI~eL~~~L~~~ 483 (564)
|+++.|++++++.+.+.
T Consensus 159 a~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 159 AKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhcCHHHHHHHHHhh
Confidence 99999999999988654
No 100
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.81 E-value=4.9e-19 Score=189.77 Aligned_cols=165 Identities=23% Similarity=0.248 Sum_probs=119.3
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEEC-CeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC-GVPVTLLDTAGIRETDDIVEKIGVERSEAVALG 397 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~-g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~ 397 (564)
..|+|+|.||||||||+|+|++... .++++|+||.+.....+.++ +..+.+|||||+.+.......++ ......+..
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~-kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg-~~fLrhier 236 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLG-HQFLRHIER 236 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCC-ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHH-HHHHHHHhh
Confidence 5799999999999999999999875 46899999999988888887 78999999999975322211121 112344678
Q ss_pred CcEEEEEecCCCC---CChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcccC-CcEEEEeccCCCCH
Q 008468 398 ADVIIMTVSAVDG---WTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSF-NDHVFTCAVTGQGI 473 (564)
Q Consensus 398 aD~vl~ViD~s~~---~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~~~-~~~i~iSAktg~GI 473 (564)
+|++++|+|+++. ...++...|...+..+.....++|+++|+||+|+.... ...+.+.+.+ .+++++||+++.|+
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~-e~l~~l~~~l~~~i~~iSA~tgeGI 315 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAE-ENLEEFKEKLGPKVFPISALTGQGL 315 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCH-HHHHHHHHHhCCcEEEEeCCCCCCH
Confidence 9999999999864 33444444444333322222478999999999984322 1112333222 57899999999999
Q ss_pred HHHHHHHHHHhhc
Q 008468 474 QDLETAIMKIVGL 486 (564)
Q Consensus 474 ~eL~~~L~~~l~~ 486 (564)
++|+++|.+.+..
T Consensus 316 ~eL~~~L~~~l~~ 328 (424)
T PRK12297 316 DELLYAVAELLEE 328 (424)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988753
No 101
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.81 E-value=5.6e-19 Score=164.35 Aligned_cols=154 Identities=25% Similarity=0.231 Sum_probs=106.5
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|++|||||||+|+|++..+.. ...+..+.+.....+.+++ ..+.+|||||...+.... ...++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~~~ 71 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP-DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLT--------SSYYR 71 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-ccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhh--------HHHhC
Confidence 589999999999999999999887532 2223333333333344544 567899999976543332 23478
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhc-ccCCcEEEEeccCCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVG-NSFNDHVFTCAVTGQG 472 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~-~~~~~~i~iSAktg~G 472 (564)
.+|++++|+|.+++.+++....|.. +... ....+.|+++|+||+|+........ ..+. ....+++++||++|.|
T Consensus 72 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 149 (161)
T cd01863 72 GAQGVILVYDVTRRDTFTNLETWLNELETY--STNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDG 149 (161)
T ss_pred CCCEEEEEEECCCHHHHHhHHHHHHHHHHh--CCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCC
Confidence 9999999999998777766544433 2222 1235789999999999973332221 2222 2335799999999999
Q ss_pred HHHHHHHHHHH
Q 008468 473 IQDLETAIMKI 483 (564)
Q Consensus 473 I~eL~~~L~~~ 483 (564)
++++++.+.+.
T Consensus 150 i~~~~~~~~~~ 160 (161)
T cd01863 150 VQQAFEELVEK 160 (161)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 102
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.81 E-value=7.9e-19 Score=162.55 Aligned_cols=154 Identities=20% Similarity=0.252 Sum_probs=109.1
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|++|||||||+|+|++..+.. ...+.++.+.....+.+.+. .+.+|||||...+.... ..++.
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~~ 71 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALG--------PIYYR 71 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhh--------HHHhc
Confidence 589999999999999999999887542 23334444555555665554 57899999975543332 23478
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhc-ccCCcEEEEeccCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVG-NSFNDHVFTCAVTGQ 471 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~-~~~~~~i~iSAktg~ 471 (564)
.+|++++|+|++++.+..+...|.. +... ...+.|+++|+||+|+........ +++. ....+++++||++|.
T Consensus 72 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 148 (162)
T cd04123 72 DADGAILVYDITDADSFQKVKKWIKELKQM---RGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGK 148 (162)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHh---CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 8999999999998777666544432 3322 123689999999999975443322 2222 234568999999999
Q ss_pred CHHHHHHHHHHHh
Q 008468 472 GIQDLETAIMKIV 484 (564)
Q Consensus 472 GI~eL~~~L~~~l 484 (564)
|++++++++.+.+
T Consensus 149 gi~~~~~~l~~~~ 161 (162)
T cd04123 149 GIEELFLSLAKRM 161 (162)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998754
No 103
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.81 E-value=3.3e-19 Score=164.77 Aligned_cols=151 Identities=26% Similarity=0.329 Sum_probs=110.0
Q ss_pred EEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh--hcCcE
Q 008468 323 IVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA--LGADV 400 (564)
Q Consensus 323 IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l--~~aD~ 400 (564)
|+|++|||||||+|++++.. ..++.++++|.+.....+.+++..+.+|||||+.++........+ ...++ ..+|+
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~--~~~~~~~~~~d~ 77 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKV--ARDFLLGEKPDL 77 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHH--HHHHhcCCCCcE
Confidence 58999999999999999986 456788999999888888899999999999999765422111111 12223 58999
Q ss_pred EEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhccc-CCcEEEEeccCCCCHHHHH
Q 008468 401 IIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGNS-FNDHVFTCAVTGQGIQDLE 477 (564)
Q Consensus 401 vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~~-~~~~i~iSAktg~GI~eL~ 477 (564)
+++|+|+++... ....+..+.. .++|+++|+||+|+.+...... +.+... ..+++++||++|.|+++++
T Consensus 78 vi~v~d~~~~~~--~~~~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 78 IVNVVDATNLER--NLYLTLQLLE------LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EEEEeeCCcchh--HHHHHHHHHH------cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHH
Confidence 999999987432 2233333332 2689999999999976543222 233322 3579999999999999999
Q ss_pred HHHHHHh
Q 008468 478 TAIMKIV 484 (564)
Q Consensus 478 ~~L~~~l 484 (564)
+.+.+..
T Consensus 150 ~~l~~~~ 156 (158)
T cd01879 150 DAIAELA 156 (158)
T ss_pred HHHHHHh
Confidence 9998764
No 104
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.81 E-value=9.1e-19 Score=164.34 Aligned_cols=158 Identities=21% Similarity=0.207 Sum_probs=110.6
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|++|||||||+|++.+.... ....+..+.+.....+.+++. .+.+|||||...+... ...+++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~ 71 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSL--------GVAFYR 71 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhH--------HHHHhc
Confidence 58999999999999999999998753 222333344555556666664 4568999998654433 234588
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHH-HHhccc-cCCCCCCEEEEEecCCCCCCCcchh---hhhccc--CCcEEEEeccC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNR-IQSNKK-STESSTPMILVINKIDCAPSASNEW---NKVGNS--FNDHVFTCAVT 469 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~-~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~~--~~~~i~iSAkt 469 (564)
.+|++|+|+|++++.++.....|.. +..... ....+.|+++|+||+|+........ +.+.+. ..+++++||++
T Consensus 72 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 151 (172)
T cd01862 72 GADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKE 151 (172)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCC
Confidence 9999999999998776665544433 222211 1123689999999999974332211 223222 25799999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 008468 470 GQGIQDLETAIMKIVG 485 (564)
Q Consensus 470 g~GI~eL~~~L~~~l~ 485 (564)
|.|++++++.+.+.+.
T Consensus 152 ~~gv~~l~~~i~~~~~ 167 (172)
T cd01862 152 AINVEQAFETIARKAL 167 (172)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998764
No 105
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.81 E-value=5.2e-19 Score=169.29 Aligned_cols=155 Identities=19% Similarity=0.170 Sum_probs=109.6
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEEC-C--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC-G--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~-g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
+||+|+|++|||||||+++|.+..+. ..+.+|..+.....+... + ..+.+|||||..++.... ..++
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~~ 70 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP--EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLR--------PLSY 70 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC--CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHH--------HHhC
Confidence 58999999999999999999988753 445555444433344544 3 467899999986554332 2347
Q ss_pred hcCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCc----chh---hhhccc-CC-cEEEE
Q 008468 396 LGADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSAS----NEW---NKVGNS-FN-DHVFT 465 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~----~~~---~~l~~~-~~-~~i~i 465 (564)
+.+|++++|+|+++..++++.. .|...... ...+.|+|+|+||+|+..... ... +++... .. +++++
T Consensus 71 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 147 (187)
T cd04132 71 PDVDVLLICYAVDNPTSLDNVEDKWFPEVNH---FCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLEC 147 (187)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHH---hCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEc
Confidence 8999999999999987777653 23322221 124789999999999965431 111 233322 23 78999
Q ss_pred eccCCCCHHHHHHHHHHHhhc
Q 008468 466 CAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 466 SAktg~GI~eL~~~L~~~l~~ 486 (564)
||++|.|++++++.+.+.+..
T Consensus 148 Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 148 SAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred cCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999987753
No 106
>PLN03110 Rab GTPase; Provisional
Probab=99.81 E-value=7.6e-19 Score=173.08 Aligned_cols=158 Identities=18% Similarity=0.190 Sum_probs=117.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+||+++|++|||||||+++|.+..+. ....+....+.....+.+++ ..+.||||||...+.... ..+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~-~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~--------~~~ 81 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAIT--------SAY 81 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHH--------HHH
Confidence 3489999999999999999999998753 23445555677777777776 467899999986654432 345
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
++.+|++++|+|+++..+++....|...... ....+.|+++|+||+|+........ ..+.. ...+++++||++|
T Consensus 82 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~--~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g 159 (216)
T PLN03110 82 YRGAVGALLVYDITKRQTFDNVQRWLRELRD--HADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEA 159 (216)
T ss_pred hCCCCEEEEEEECCChHHHHHHHHHHHHHHH--hCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 8899999999999998877776544332221 1234789999999999965543332 22322 2367999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 008468 471 QGIQDLETAIMKIVG 485 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~ 485 (564)
.|++++++.|.+.+.
T Consensus 160 ~~v~~lf~~l~~~i~ 174 (216)
T PLN03110 160 TNVEKAFQTILLEIY 174 (216)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988764
No 107
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.81 E-value=5.8e-19 Score=169.11 Aligned_cols=155 Identities=18% Similarity=0.224 Sum_probs=108.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+.+||+++|.+|||||||++++...++. ...|.+..+ ...+..++..+.+|||||...+...+ ..+++
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~--~~~pt~g~~--~~~~~~~~~~~~i~D~~Gq~~~~~~~--------~~~~~ 83 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFN--VETVEYKNISFTVWDVGGQDKIRPLW--------RHYFQ 83 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc--cccCCccee--EEEEEECCEEEEEEECCCCHHHHHHH--------HHHhc
Confidence 4589999999999999999999876543 333333332 33466788899999999986554443 34589
Q ss_pred cCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhc-----ccCCcEEEEecc
Q 008468 397 GADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVG-----NSFNDHVFTCAV 468 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~-----~~~~~~i~iSAk 468 (564)
++|++|+|+|+++..+..+.. .+..+.... ...+.|+++|+||+|+......+. +.+. .....++++||+
T Consensus 84 ~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~--~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~ 161 (181)
T PLN00223 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
T ss_pred cCCEEEEEEeCCcHHHHHHHHHHHHHHhcCH--hhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCC
Confidence 999999999999876655432 333332211 124689999999999976543322 1111 111135689999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 008468 469 TGQGIQDLETAIMKIVG 485 (564)
Q Consensus 469 tg~GI~eL~~~L~~~l~ 485 (564)
+|+|+++++++|.+.+.
T Consensus 162 ~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 162 SGEGLYEGLDWLSNNIA 178 (181)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999988763
No 108
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.81 E-value=1e-18 Score=167.72 Aligned_cols=157 Identities=17% Similarity=0.167 Sum_probs=112.4
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|++|||||||+++|.+..+.. ...+..+.+.....+.+++ ..+.+|||||...+.... ..+++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~--------~~~~~ 71 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE-STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLN--------NSYYR 71 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhH--------HHHcc
Confidence 589999999999999999999887532 2334444555555666665 456789999976554332 34588
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTGQG 472 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg~G 472 (564)
.+|++++|||++++.++.....|...... ......|+++|+||+|+.+...... ..+.. ...+++++||++|.|
T Consensus 72 ~~d~iilv~d~~~~~s~~~i~~~~~~i~~--~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~ 149 (188)
T cd04125 72 GAHGYLLVYDVTDQESFENLKFWINEINR--YARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSIN 149 (188)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHH--hCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 99999999999998777766544332221 1223579999999999975543322 22322 234799999999999
Q ss_pred HHHHHHHHHHHhhc
Q 008468 473 IQDLETAIMKIVGL 486 (564)
Q Consensus 473 I~eL~~~L~~~l~~ 486 (564)
++++++++.+.+..
T Consensus 150 i~~~f~~l~~~~~~ 163 (188)
T cd04125 150 VEEAFILLVKLIIK 163 (188)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987753
No 109
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.80 E-value=9.5e-19 Score=163.58 Aligned_cols=150 Identities=27% Similarity=0.368 Sum_probs=110.6
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEEC---CeeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC---GVPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~---g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
.|+|+|++|||||||+|+|.+.+.. ....+++|.+.....+..+ +..+.+|||||...+.... ...+.
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~--------~~~~~ 72 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMR--------ARGAS 72 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccc-cccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHH--------HHHHh
Confidence 5899999999999999999988754 3445677777766666664 7789999999986554332 23467
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh----hhhc-------ccCCcEEEE
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW----NKVG-------NSFNDHVFT 465 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~----~~l~-------~~~~~~i~i 465 (564)
.+|++++|+|++++...+....+..+.. .++|+++|+||+|+........ ..+. ....+++++
T Consensus 73 ~~d~il~v~d~~~~~~~~~~~~~~~~~~------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (168)
T cd01887 73 LTDIAILVVAADDGVMPQTIEAIKLAKA------ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPT 146 (168)
T ss_pred hcCEEEEEEECCCCccHHHHHHHHHHHH------cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEe
Confidence 8999999999998765555555554432 3689999999999875432111 1111 112478999
Q ss_pred eccCCCCHHHHHHHHHHHh
Q 008468 466 CAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 466 SAktg~GI~eL~~~L~~~l 484 (564)
||++|.|+++++++|.+..
T Consensus 147 Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 147 SAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred ecccCCCHHHHHHHHHHhh
Confidence 9999999999999998865
No 110
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.80 E-value=5.7e-19 Score=170.05 Aligned_cols=153 Identities=21% Similarity=0.238 Sum_probs=109.8
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhhc
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVALG 397 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~ 397 (564)
||+|+|++|||||||++++.+..+. ..+.+|..+.....+.+++ ..+.||||+|..++.... ..++..
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~--------~~~~~~ 71 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFP--QVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLR--------SLSYAD 71 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccc--------cccccC
Confidence 7999999999999999999988753 3444444333334455555 467899999987654332 234789
Q ss_pred CcEEEEEecCCCCCChhHHH-HH-HHHHhccccCCCCCCEEEEEecCCCCCCCcch------------h---hhhccc--
Q 008468 398 ADVIIMTVSAVDGWTSEDSE-LL-NRIQSNKKSTESSTPMILVINKIDCAPSASNE------------W---NKVGNS-- 458 (564)
Q Consensus 398 aD~vl~ViD~s~~~s~~~~~-~l-~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~------------~---~~l~~~-- 458 (564)
+|++++|||++++.+++... .| ..+... ..+.|+++|+||+|+....... . ..+...
T Consensus 72 a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~----~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 147 (189)
T cd04134 72 TDVIMLCFSVDSPDSLENVESKWLGEIREH----CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRIN 147 (189)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHh----CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 99999999999988887653 23 333321 3478999999999997643211 1 122222
Q ss_pred CCcEEEEeccCCCCHHHHHHHHHHHhhc
Q 008468 459 FNDHVFTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 459 ~~~~i~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
..+++++||++|.|++++|+++.+.+..
T Consensus 148 ~~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 148 ALRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred CCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 2468999999999999999999988753
No 111
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.80 E-value=7.9e-19 Score=174.63 Aligned_cols=155 Identities=16% Similarity=0.162 Sum_probs=112.9
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+++|++|||||||++++++..+. ..+.+|..+.....+.+++. .+.||||+|...+.... ..++
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~--~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~--------~~~~ 82 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVR--------PLCY 82 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCC--CCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHH--------HHHc
Confidence 489999999999999999999988753 45555544444445666664 56789999987665432 2458
Q ss_pred hcCcEEEEEecCCCCCChhHH-HHHHH-HHhccccCCCCCCEEEEEecCCCCCC------------Ccchh---hhhccc
Q 008468 396 LGADVIIMTVSAVDGWTSEDS-ELLNR-IQSNKKSTESSTPMILVINKIDCAPS------------ASNEW---NKVGNS 458 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~-~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~------------~~~~~---~~l~~~ 458 (564)
+++|++++|||++++.+++.. ..|.. +... .++.|+|+|+||+||... ..... +++++.
T Consensus 83 ~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~----~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~ 158 (232)
T cd04174 83 SDSDAVLLCFDISRPETVDSALKKWKAEIMDY----CPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQ 158 (232)
T ss_pred CCCcEEEEEEECCChHHHHHHHHHHHHHHHHh----CCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHH
Confidence 999999999999998888763 44443 3322 246899999999998642 11221 344443
Q ss_pred C-C-cEEEEeccCCC-CHHHHHHHHHHHhhc
Q 008468 459 F-N-DHVFTCAVTGQ-GIQDLETAIMKIVGL 486 (564)
Q Consensus 459 ~-~-~~i~iSAktg~-GI~eL~~~L~~~l~~ 486 (564)
. . .++++||++|. ||+++|+.+.+.+..
T Consensus 159 ~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 159 LGAEVYLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred cCCCEEEEccCCcCCcCHHHHHHHHHHHHHH
Confidence 3 3 58999999997 899999999887643
No 112
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.80 E-value=9.4e-19 Score=165.80 Aligned_cols=154 Identities=21% Similarity=0.221 Sum_probs=110.0
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccC-eeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAG-TTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~g-tT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
||+++|++|||||||+++++++.+. ..+.+ +..+.....+.+++ ..+.+|||||...+.... ..+++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~~~ 71 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD--KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIA--------STYYR 71 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhH--------HHHhc
Confidence 7999999999999999999998753 44433 34455556666666 457899999986654432 34588
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcch--h---hhhcc-cCCcEEEEeccC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNE--W---NKVGN-SFNDHVFTCAVT 469 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~--~---~~l~~-~~~~~i~iSAkt 469 (564)
.+|++++|+|+++..++.....|.. +.... .....|+++|+||+|+.+..... . ..+.. ...+++++||++
T Consensus 72 ~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 149 (170)
T cd04108 72 GAQAIIIVFDLTDVASLEHTRQWLEDALKEN--DPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALS 149 (170)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCC
Confidence 9999999999988766665544433 33221 12346799999999996543321 1 22322 235789999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 008468 470 GQGIQDLETAIMKIVG 485 (564)
Q Consensus 470 g~GI~eL~~~L~~~l~ 485 (564)
|.|++++++.|.+.+.
T Consensus 150 g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 150 GENVREFFFRVAALTF 165 (170)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988764
No 113
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.80 E-value=1.2e-18 Score=167.80 Aligned_cols=155 Identities=19% Similarity=0.236 Sum_probs=109.9
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEE-EEEEEEEECCee--eEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRD-VIEASVTVCGVP--VTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d-~~~~~~~~~g~~--i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
+||+|+|++|||||||+++|++..+. ...+.+|... +....+.+++.. +.+|||||...+.... ..++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~~~ 71 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFL-VGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMS--------RIYY 71 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcC-CcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhh--------Hhhc
Confidence 48999999999999999999988753 2344444433 344566777754 5689999986654432 2347
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCc----chh---hhhcc-cCCcEEEEec
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS----NEW---NKVGN-SFNDHVFTCA 467 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~----~~~---~~l~~-~~~~~i~iSA 467 (564)
..+|++++|+|+++..++++...|...... ...+.|+++|+||+|+..... ... ..+.. ...+++++||
T Consensus 72 ~~~d~iilv~d~~~~~s~~~~~~~~~~i~~---~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa 148 (193)
T cd04118 72 RGAKAAIVCYDLTDSSSFERAKFWVKELQN---LEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSS 148 (193)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHh---cCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeC
Confidence 889999999999987776665444332222 124689999999999864321 111 22222 2356899999
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 008468 468 VTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 468 ktg~GI~eL~~~L~~~l~ 485 (564)
++|.|++++++.+.+.+.
T Consensus 149 ~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 149 KTGQNVDELFQKVAEDFV 166 (193)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999998774
No 114
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.80 E-value=5.6e-19 Score=166.61 Aligned_cols=150 Identities=22% Similarity=0.288 Sum_probs=108.4
Q ss_pred EEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhhhcC
Q 008468 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVALGA 398 (564)
Q Consensus 321 I~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~a 398 (564)
|+|+|++|||||||++++.+..+. ..+.++..+.....+.+++. .+.+|||||..++.... ..++..+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~~~~~ 70 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP--EDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLR--------PLSYPDT 70 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCC--CCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhc--------hhhcCCC
Confidence 589999999999999999998753 44445555555556666665 47899999987665432 2347899
Q ss_pred cEEEEEecCCCCCChhHHH-HHHH-HHhccccCCCCCCEEEEEecCCCCCCCc------------chh---hhhcccC--
Q 008468 399 DVIIMTVSAVDGWTSEDSE-LLNR-IQSNKKSTESSTPMILVINKIDCAPSAS------------NEW---NKVGNSF-- 459 (564)
Q Consensus 399 D~vl~ViD~s~~~s~~~~~-~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~------------~~~---~~l~~~~-- 459 (564)
|++|+|+|+++..++++.. .|.. +.. ...+.|+++|+||+|+..... ... +++....
T Consensus 71 d~~ilv~d~~~~~s~~~~~~~~~~~i~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 146 (174)
T smart00174 71 DVFLICFSVDSPASFENVKEKWYPEVKH----FCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGA 146 (174)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHh----hCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCC
Confidence 9999999999887777653 2333 322 134789999999999975321 111 2233222
Q ss_pred CcEEEEeccCCCCHHHHHHHHHHHh
Q 008468 460 NDHVFTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 460 ~~~i~iSAktg~GI~eL~~~L~~~l 484 (564)
.+++++||++|.|++++++.+.+.+
T Consensus 147 ~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 147 VKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHh
Confidence 3789999999999999999998865
No 115
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.80 E-value=1.2e-18 Score=164.51 Aligned_cols=157 Identities=18% Similarity=0.158 Sum_probs=112.9
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|++|||||||++++++..+. ....+....+.....+.+++ ..+.+|||+|..++... ....+++
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~ 74 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFP-ERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKS-------MVQHYYR 74 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-CccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHh-------hHHHhhc
Confidence 79999999999999999999987643 12334444455556667766 56789999998654321 1234578
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccC---
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVT--- 469 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAkt--- 469 (564)
++|++++|+|++++.++.+...|....... ....+.|+++|+||+|+........ +++.. ...+++++||++
T Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 153 (170)
T cd04115 75 NVHAVVFVYDVTNMASFHSLPSWIEECEQH-SLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSE 153 (170)
T ss_pred CCCEEEEEEECCCHHHHHhHHHHHHHHHHh-cCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcC
Confidence 999999999999988888776655432221 1124689999999999976544322 23332 236799999999
Q ss_pred CCCHHHHHHHHHHHh
Q 008468 470 GQGIQDLETAIMKIV 484 (564)
Q Consensus 470 g~GI~eL~~~L~~~l 484 (564)
+.|++++|..+.+.+
T Consensus 154 ~~~i~~~f~~l~~~~ 168 (170)
T cd04115 154 NDHVEAIFMTLAHKL 168 (170)
T ss_pred CCCHHHHHHHHHHHh
Confidence 899999999988765
No 116
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.80 E-value=7.6e-19 Score=168.42 Aligned_cols=156 Identities=20% Similarity=0.189 Sum_probs=107.6
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
++.+||+++|++|||||||++++...++. ...|.+. .....+..++..+.+|||||...+...+ ..++
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~--~~~~T~~--~~~~~~~~~~~~~~l~D~~G~~~~~~~~--------~~~~ 82 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVV--TTIPTIG--FNVETVEYKNLKFTMWDVGGQDKLRPLW--------RHYY 82 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCCccc--cceEEEEECCEEEEEEECCCCHhHHHHH--------HHHh
Confidence 34589999999999999999999766542 3233222 2223556688899999999986654432 3458
Q ss_pred hcCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcc-----cCCcEEEEec
Q 008468 396 LGADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGN-----SFNDHVFTCA 467 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~-----~~~~~i~iSA 467 (564)
+.+|++|+|+|+++..+..+.. .+..+.... ...+.|+++|+||+|+........ +.+.. ....++++||
T Consensus 83 ~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~--~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa 160 (182)
T PTZ00133 83 QNTNGLIFVVDSNDRERIGDAREELERMLSED--ELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCA 160 (182)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCH--hhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeC
Confidence 9999999999999866555432 333333221 123579999999999865432221 11111 1124568999
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 008468 468 VTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 468 ktg~GI~eL~~~L~~~l~ 485 (564)
++|.|+++++++|.+.+.
T Consensus 161 ~tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 161 TTAQGLYEGLDWLSANIK 178 (182)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988664
No 117
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.80 E-value=5.9e-19 Score=174.31 Aligned_cols=157 Identities=13% Similarity=0.106 Sum_probs=111.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccc-cCeeEEEEEEEEEEC--CeeeEEEeCCCCCCchhHHHHhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEI-AGTTRDVIEASVTVC--GVPVTLLDTAGIRETDDIVEKIGVERSEA 393 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~-~gtT~d~~~~~~~~~--g~~i~LiDTpG~~~~~~~ie~~~i~~~~~ 393 (564)
..+||+++|.+|||||||+++++...+. ..+ +....+.....+..+ ...+.+|||+|...+.... ..
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~--~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~ 81 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE--KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DG 81 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCC--CccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhh--------HH
Confidence 4489999999999999999999877643 222 222234444444443 3678899999987765442 23
Q ss_pred hhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhc-ccCCcEEEEeccCCC
Q 008468 394 VALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVG-NSFNDHVFTCAVTGQ 471 (564)
Q Consensus 394 ~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~-~~~~~~i~iSAktg~ 471 (564)
+++.+|++|+|||++++.++.....|...... ...+.|+++|+||+|+........ ..+. ....+++++||++|.
T Consensus 82 ~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~---~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~ 158 (219)
T PLN03071 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY 158 (219)
T ss_pred HcccccEEEEEEeCCCHHHHHHHHHHHHHHHH---hCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCC
Confidence 58899999999999998887776555432221 134789999999999964322111 1222 234578999999999
Q ss_pred CHHHHHHHHHHHhhc
Q 008468 472 GIQDLETAIMKIVGL 486 (564)
Q Consensus 472 GI~eL~~~L~~~l~~ 486 (564)
|++++|++|.+.+..
T Consensus 159 ~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 159 NFEKPFLYLARKLAG 173 (219)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999988753
No 118
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.80 E-value=9.5e-19 Score=167.83 Aligned_cols=154 Identities=19% Similarity=0.245 Sum_probs=109.9
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCe-eEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGT-TRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gt-T~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
+||+++|+.|||||||++++++..+. ..+.+| ..+.....+.+++ ..+.+|||+|...+.... ..++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~--~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~--------~~~~ 70 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFD--EDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINML--------PLVC 70 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhh--------HHHC
Confidence 58999999999999999999988753 344433 3456566777777 456889999987665442 2458
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCc------chh--hhhcc-cCCcEEEEe
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS------NEW--NKVGN-SFNDHVFTC 466 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~------~~~--~~l~~-~~~~~i~iS 466 (564)
+++|++++|||++++.++.+...|....... .....| |+|+||+|+..... ... +++.+ ...+++++|
T Consensus 71 ~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~--~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~S 147 (182)
T cd04128 71 NDAVAILFMFDLTRKSTLNSIKEWYRQARGF--NKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCS 147 (182)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHh--CCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEe
Confidence 8999999999999988887765444322211 123456 68899999963211 111 23332 225789999
Q ss_pred ccCCCCHHHHHHHHHHHhh
Q 008468 467 AVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 467 Aktg~GI~eL~~~L~~~l~ 485 (564)
|++|.|++++|+++.+.+.
T Consensus 148 Ak~g~~v~~lf~~l~~~l~ 166 (182)
T cd04128 148 TSHSINVQKIFKIVLAKAF 166 (182)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999998764
No 119
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.80 E-value=1.1e-18 Score=167.26 Aligned_cols=156 Identities=19% Similarity=0.258 Sum_probs=106.3
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEE---CCeeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTV---CGVPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~---~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
.+||+++|++|||||||++++...++. ...|.++.+.....+.. .+..+.+|||||...+...++ .+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~--------~~ 72 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV--NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWK--------SY 72 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC--CcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHH--------HH
Confidence 489999999999999999999987653 33443333333333332 457899999999865544432 44
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHH-HHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhc---cc----CCcEEEE
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELL-NRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVG---NS----FNDHVFT 465 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l-~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~---~~----~~~~i~i 465 (564)
++.+|++++|+|++++.+..+...+ ..+.... ...+.|+++|+||+|+........ +.+. .. ..+++++
T Consensus 73 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~--~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (183)
T cd04152 73 TRCTDGIVFVVDSVDVERMEEAKTELHKITRFS--ENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPA 150 (183)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhhh--hcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEe
Confidence 7899999999999886555444322 2233221 124689999999999865322221 2211 11 1347899
Q ss_pred eccCCCCHHHHHHHHHHHhh
Q 008468 466 CAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 466 SAktg~GI~eL~~~L~~~l~ 485 (564)
||++|.|+++++++|.+.+.
T Consensus 151 SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 151 CAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred ecccCCCHHHHHHHHHHHHH
Confidence 99999999999999998774
No 120
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.80 E-value=8.8e-19 Score=165.27 Aligned_cols=153 Identities=24% Similarity=0.264 Sum_probs=110.5
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCee--eEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVP--VTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~--i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|++|+|||||++++.+..+ ...+.++..+.....+.+++.. +.+|||||...+.... ..++.
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~~~ 70 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLR--------PLSYP 70 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccc--------cccCC
Confidence 5899999999999999999998875 3555566666665566777654 6789999987654332 23478
Q ss_pred cCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcc------------hh---hhhcccC-
Q 008468 397 GADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASN------------EW---NKVGNSF- 459 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~------------~~---~~l~~~~- 459 (564)
.+|++++|+|.+++.++++.. .|...... ...+.|+++|+||+|+.+.... .. ..+....
T Consensus 71 ~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~---~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 147 (174)
T cd04135 71 MTDVFLICFSVVNPASFQNVKEEWVPELKE---YAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIG 147 (174)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHh---hCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 899999999999987776653 34333222 1357899999999998654211 10 1222222
Q ss_pred -CcEEEEeccCCCCHHHHHHHHHHHh
Q 008468 460 -NDHVFTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 460 -~~~i~iSAktg~GI~eL~~~L~~~l 484 (564)
.+++++||++|.|++++++.+.+.+
T Consensus 148 ~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 148 AHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred CCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 3689999999999999999998754
No 121
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.80 E-value=1.3e-18 Score=170.84 Aligned_cols=156 Identities=19% Similarity=0.206 Sum_probs=112.9
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEEC-C--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC-G--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~-g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
+||+|+|++|||||||+|+|++..+... ..+.++.+.....+.+. + ..+.+|||||...+... ...++
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~-~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~ 73 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV-SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSI--------TRSYY 73 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHH--------HHHHh
Confidence 7999999999999999999998875432 23444456666666653 3 46789999998655433 23458
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
+++|++++|||++++.++.+...|.. +.... .....|+++|+||+|+........ +.+.+ ...+++++||++|
T Consensus 74 ~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~--~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g 151 (211)
T cd04111 74 RNSVGVLLVFDITNRESFEHVHDWLEEARSHI--QPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTG 151 (211)
T ss_pred cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCC
Confidence 89999999999999877777644433 33221 123567899999999976443322 23332 2367999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 008468 471 QGIQDLETAIMKIVG 485 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~ 485 (564)
.|++++++.|.+.+.
T Consensus 152 ~~v~e~f~~l~~~~~ 166 (211)
T cd04111 152 DNVEEAFELLTQEIY 166 (211)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
No 122
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.80 E-value=9.3e-19 Score=161.74 Aligned_cols=152 Identities=22% Similarity=0.254 Sum_probs=112.4
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhhc
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVALG 397 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~ 397 (564)
||+|+|++|||||||++++++.. .+..+.+++.+.....+.+++ ..+.+|||||........ ...+..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~~~~ 70 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMR--------DLYIRQ 70 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHH--------HHHHhc
Confidence 68999999999999999999876 456677777777776777764 567899999986644432 234788
Q ss_pred CcEEEEEecCCCCCChhHHHH-HHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCCCC
Q 008468 398 ADVIIMTVSAVDGWTSEDSEL-LNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTGQG 472 (564)
Q Consensus 398 aD~vl~ViD~s~~~s~~~~~~-l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg~G 472 (564)
+|++++|+|.+++.+..+... +..+.... .....|+++|+||+|+........ ..+.. ...+++++||++|.|
T Consensus 71 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 148 (160)
T cd00876 71 GDGFILVYSITDRESFEEIKGYREQILRVK--DDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNIN 148 (160)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCC
Confidence 999999999998766665533 33333321 114789999999999976433222 22222 335899999999999
Q ss_pred HHHHHHHHHHH
Q 008468 473 IQDLETAIMKI 483 (564)
Q Consensus 473 I~eL~~~L~~~ 483 (564)
+++++++|.+.
T Consensus 149 i~~l~~~l~~~ 159 (160)
T cd00876 149 IDEVFKLLVRE 159 (160)
T ss_pred HHHHHHHHHhh
Confidence 99999999764
No 123
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.79 E-value=1.2e-18 Score=164.91 Aligned_cols=150 Identities=23% Similarity=0.285 Sum_probs=110.3
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|++|||||||++++.+..+ ...+++|+.+.....+.+++. .+.+|||||...+.... ..+++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~~~ 70 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY--PTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLR--------PLCYP 70 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcccc--------ccccC
Confidence 5899999999999999999998764 467778877777667777764 56789999986654432 23478
Q ss_pred cCcEEEEEecCCCCCChhHH-HHHH-HHHhccccCCCCCCEEEEEecCCCCCCC------------cchh---hhhcc--
Q 008468 397 GADVIIMTVSAVDGWTSEDS-ELLN-RIQSNKKSTESSTPMILVINKIDCAPSA------------SNEW---NKVGN-- 457 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~-~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~------------~~~~---~~l~~-- 457 (564)
.+|++++|||++++.+++.. +.|. .+... ..+.|+++|+||+|+.... .... ..+..
T Consensus 71 ~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 146 (173)
T cd04130 71 DTDVFLLCFSVVNPSSFQNISEKWIPEIRKH----NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKI 146 (173)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhh----CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHh
Confidence 99999999999998777765 2333 33321 2468999999999996432 1111 22222
Q ss_pred cCCcEEEEeccCCCCHHHHHHHHHH
Q 008468 458 SFNDHVFTCAVTGQGIQDLETAIMK 482 (564)
Q Consensus 458 ~~~~~i~iSAktg~GI~eL~~~L~~ 482 (564)
...+++++||++|.|++++++.+.-
T Consensus 147 ~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 147 GACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 2247999999999999999988753
No 124
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.79 E-value=1.1e-18 Score=172.50 Aligned_cols=154 Identities=15% Similarity=0.149 Sum_probs=113.1
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+|+|++|||||||++++.+..+ ...+.+|..+.....+.+++. .+.||||+|...+.... ..++.
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f--~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~--------~~~~~ 71 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY--PGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVR--------PLAYP 71 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHh--------HHhcc
Confidence 6899999999999999999998775 355656555555556677764 46789999987665442 23589
Q ss_pred cCcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCCc------------chh---hhhcccC-
Q 008468 397 GADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSAS------------NEW---NKVGNSF- 459 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~------------~~~---~~l~~~~- 459 (564)
.+|++|+|||++++.+++.. ..|...... ...+.|+|+|+||+||..... ... +.+.+..
T Consensus 72 ~~d~illvfdis~~~Sf~~i~~~w~~~~~~---~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~ 148 (222)
T cd04173 72 DSDAVLICFDISRPETLDSVLKKWQGETQE---FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVG 148 (222)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHh---hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcC
Confidence 99999999999998888776 445433222 235789999999999965311 111 3344333
Q ss_pred -CcEEEEeccCCC-CHHHHHHHHHHHhh
Q 008468 460 -NDHVFTCAVTGQ-GIQDLETAIMKIVG 485 (564)
Q Consensus 460 -~~~i~iSAktg~-GI~eL~~~L~~~l~ 485 (564)
.+|+++||+++. ||+++|+.......
T Consensus 149 ~~~y~E~SAk~~~~~V~~~F~~~~~~~~ 176 (222)
T cd04173 149 AVSYVECSSRSSERSVRDVFHVATVASL 176 (222)
T ss_pred CCEEEEcCCCcCCcCHHHHHHHHHHHHH
Confidence 379999999998 49999999988653
No 125
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.79 E-value=2.6e-18 Score=161.11 Aligned_cols=155 Identities=19% Similarity=0.164 Sum_probs=110.6
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
++|+++|++|||||||++++++.... ....+..+.+.....+.+++. .+.+|||||...+.... ..++.
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~~ 78 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSIT--------QSYYR 78 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHH--------HHHhc
Confidence 79999999999999999999976542 233444555666667777774 46789999986554332 24588
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTGQG 472 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg~G 472 (564)
.+|++++|+|++++.++.....|....... ...+.|+++|+||+|+.+...... +.+.. ...+++++||++|.|
T Consensus 79 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g 156 (169)
T cd04114 79 SANALILTYDITCEESFRCLPEWLREIEQY--ANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDN 156 (169)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHh--CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence 999999999998876665554443322211 123689999999999975544322 22222 125689999999999
Q ss_pred HHHHHHHHHHHh
Q 008468 473 IQDLETAIMKIV 484 (564)
Q Consensus 473 I~eL~~~L~~~l 484 (564)
++++++.|.+.+
T Consensus 157 v~~l~~~i~~~~ 168 (169)
T cd04114 157 VEKLFLDLACRL 168 (169)
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
No 126
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.79 E-value=9.5e-19 Score=162.88 Aligned_cols=149 Identities=21% Similarity=0.217 Sum_probs=101.8
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCc
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGAD 399 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD 399 (564)
||+++|++|||||||+++|....+. ...|.+. .....+...+..+.+|||||...+...+ ..++..+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~--~~~~t~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~~~~~~ 68 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV--TTIPTIG--FNVETVTYKNLKFQVWDLGGQTSIRPYW--------RCYYSNTD 68 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc--CcCCccC--cCeEEEEECCEEEEEEECCCCHHHHHHH--------HHHhcCCC
Confidence 6899999999999999999876643 2233222 2223455678899999999987654432 34588999
Q ss_pred EEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcc-----cCCcEEEEeccCCC
Q 008468 400 VIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGN-----SFNDHVFTCAVTGQ 471 (564)
Q Consensus 400 ~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~-----~~~~~i~iSAktg~ 471 (564)
++++|+|++++.+.... +.+..+.... ...+.|+++|+||+|+........ +.+.. ...+++++||++|.
T Consensus 69 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~ 146 (158)
T cd04151 69 AIIYVVDSTDRDRLGTAKEELHAMLEEE--ELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGE 146 (158)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhch--hhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCC
Confidence 99999999886443322 2333332221 124689999999999975432221 22211 11359999999999
Q ss_pred CHHHHHHHHHH
Q 008468 472 GIQDLETAIMK 482 (564)
Q Consensus 472 GI~eL~~~L~~ 482 (564)
|+++++++|.+
T Consensus 147 gi~~l~~~l~~ 157 (158)
T cd04151 147 GLDEGMDWLVN 157 (158)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
No 127
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.79 E-value=1.6e-18 Score=168.26 Aligned_cols=155 Identities=19% Similarity=0.229 Sum_probs=113.3
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhhc
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVALG 397 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~ 397 (564)
||+++|++|||||||++++++..+ ...+..|+.+.....+.+++ ..+.+|||||...+.... ..++..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~~~~~ 70 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF--EPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMR--------KLSIQN 70 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHH--------HHHhhc
Confidence 689999999999999999998874 35566666555556677777 567899999987665432 235789
Q ss_pred CcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCC-Ccchh---h-hhc-ccCCcEEEEeccCC
Q 008468 398 ADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPS-ASNEW---N-KVG-NSFNDHVFTCAVTG 470 (564)
Q Consensus 398 aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~-~~~~~---~-~l~-~~~~~~i~iSAktg 470 (564)
+|++++|+|++++.++++...|. .+.... ...+.|+++|+||+|+... ..... . ... ....+++++||++|
T Consensus 71 ad~vilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 148 (198)
T cd04147 71 SDAFALVYAVDDPESFEEVERLREEILEVK--EDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDN 148 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCC
Confidence 99999999999877777665443 333321 1246899999999999653 22221 1 111 12257899999999
Q ss_pred CCHHHHHHHHHHHhhc
Q 008468 471 QGIQDLETAIMKIVGL 486 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~~ 486 (564)
.|+++++++|.+.+..
T Consensus 149 ~gv~~l~~~l~~~~~~ 164 (198)
T cd04147 149 ENVLEVFKELLRQANL 164 (198)
T ss_pred CCHHHHHHHHHHHhhc
Confidence 9999999999998753
No 128
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.79 E-value=1.7e-18 Score=164.38 Aligned_cols=152 Identities=16% Similarity=0.201 Sum_probs=105.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+.+||+++|++|||||||+++|.+..+. ...|. .......+.+++..+.+|||||...+...+ ..+++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~--~~~~t--~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--------~~~~~ 81 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVV--HTSPT--IGSNVEEIVYKNIRFLMWDIGGQESLRSSW--------NTYYT 81 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCC--CcCCc--cccceEEEEECCeEEEEEECCCCHHHHHHH--------HHHhh
Confidence 3589999999999999999999887653 22222 222234566778899999999986554432 24578
Q ss_pred cCcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhc-----ccCCcEEEEecc
Q 008468 397 GADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVG-----NSFNDHVFTCAV 468 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~-----~~~~~~i~iSAk 468 (564)
.+|++++|+|++++.++... +.+..+.... ...+.|+++|+||+|+........ +.+. ....+++++||+
T Consensus 82 ~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~--~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~ 159 (174)
T cd04153 82 NTDAVILVIDSTDRERLPLTKEELYKMLAHE--DLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCAL 159 (174)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhch--hhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccC
Confidence 99999999999987555433 2333333221 124689999999999875332221 2222 112358999999
Q ss_pred CCCCHHHHHHHHHH
Q 008468 469 TGQGIQDLETAIMK 482 (564)
Q Consensus 469 tg~GI~eL~~~L~~ 482 (564)
+|.|+++++++|.+
T Consensus 160 ~g~gi~e~~~~l~~ 173 (174)
T cd04153 160 TGEGLPEGLDWIAS 173 (174)
T ss_pred CCCCHHHHHHHHhc
Confidence 99999999999864
No 129
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.79 E-value=1.4e-18 Score=162.79 Aligned_cols=147 Identities=19% Similarity=0.194 Sum_probs=106.2
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|++|||||||+++++...+. ..++++. ......+.++| ..+.+|||+|.... .+++
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~--~~~~~~~-~~~~~~i~~~~~~~~l~i~D~~g~~~~-------------~~~~ 64 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYV--QLESPEG-GRFKKEVLVDGQSHLLLIRDEGGAPDA-------------QFAS 64 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCC--CCCCCCc-cceEEEEEECCEEEEEEEEECCCCCch-------------hHHh
Confidence 48999999999999999999887643 3344333 33345677788 45788999998531 2367
Q ss_pred cCcEEEEEecCCCCCChhHHHHH-HHHHhccccCCCCCCEEEEEecCCCCC--CCcchh---hhhccc--CCcEEEEecc
Q 008468 397 GADVIIMTVSAVDGWTSEDSELL-NRIQSNKKSTESSTPMILVINKIDCAP--SASNEW---NKVGNS--FNDHVFTCAV 468 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l-~~l~~~~~~~~~~~PvIvV~NK~DL~~--~~~~~~---~~l~~~--~~~~i~iSAk 468 (564)
.+|++++|||+++..++++...| ..+.... ...+.|+++|+||+|+.. ...... +++.+. ...+++|||+
T Consensus 65 ~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~--~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 142 (158)
T cd04103 65 WVDAVIFVFSLENEASFQTVYNLYHQLSSYR--NISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCAT 142 (158)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecC
Confidence 89999999999999998886444 3343321 124689999999999853 222222 334432 2589999999
Q ss_pred CCCCHHHHHHHHHHH
Q 008468 469 TGQGIQDLETAIMKI 483 (564)
Q Consensus 469 tg~GI~eL~~~L~~~ 483 (564)
+|.||+++|+.+.+.
T Consensus 143 ~~~~i~~~f~~~~~~ 157 (158)
T cd04103 143 YGLNVERVFQEAAQK 157 (158)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999998754
No 130
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.79 E-value=1.9e-18 Score=165.81 Aligned_cols=154 Identities=19% Similarity=0.231 Sum_probs=107.7
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
++.++|+++|.+|||||||+|++.+..+..+. +|.......+.+++.++.+|||||...+...+ ..++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--------~~~~ 82 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQ----PTQHPTSEELAIGNIKFTTFDLGGHQQARRLW--------KDYF 82 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccC----CccccceEEEEECCEEEEEEECCCCHHHHHHH--------HHHh
Confidence 34589999999999999999999987654321 23333445566788999999999986554332 3458
Q ss_pred hcCcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhc--c----------cCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVG--N----------SFN 460 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~--~----------~~~ 460 (564)
..+|++++|+|++++.+.... ..+..+.... ...+.|+++|+||+|+......+. +.+. + ...
T Consensus 83 ~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~--~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~ 160 (184)
T smart00178 83 PEVNGIVYLVDAYDKERFAESKRELDALLSDE--ELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPL 160 (184)
T ss_pred CCCCEEEEEEECCcHHHHHHHHHHHHHHHcCh--hhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCcee
Confidence 899999999999886544433 2333333221 124689999999999865432222 1111 0 123
Q ss_pred cEEEEeccCCCCHHHHHHHHHHH
Q 008468 461 DHVFTCAVTGQGIQDLETAIMKI 483 (564)
Q Consensus 461 ~~i~iSAktg~GI~eL~~~L~~~ 483 (564)
.++++||++|.|+++++++|.+.
T Consensus 161 ~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 161 EVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEEEeecccCCChHHHHHHHHhh
Confidence 58999999999999999999764
No 131
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.79 E-value=1.6e-18 Score=167.21 Aligned_cols=153 Identities=24% Similarity=0.299 Sum_probs=108.7
Q ss_pred cEEEEEcCCCCChhHHHHHhhcC------CcceeccccCeeEEEEEEEEEEC--------------CeeeEEEeCCCCCC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKS------ERAIVTEIAGTTRDVIEASVTVC--------------GVPVTLLDTAGIRE 378 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~------~~~~vs~~~gtT~d~~~~~~~~~--------------g~~i~LiDTpG~~~ 378 (564)
++|+++|++|+|||||+++|++. +.......+++|.+.....+.+. +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999973 22233456678888776666655 67899999999843
Q ss_pred chhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh------
Q 008468 379 TDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW------ 452 (564)
Q Consensus 379 ~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~------ 452 (564)
+ .. ........+|++++|+|++++....+.+.+..... .+.|+++|+||+|+........
T Consensus 81 ~---~~-----~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~ 146 (192)
T cd01889 81 L---IR-----TIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI------LCKKLIVVLNKIDLIPEEERERKIEKMK 146 (192)
T ss_pred H---HH-----HHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH------cCCCEEEEEECcccCCHHHHHHHHHHHH
Confidence 2 11 12233577899999999998766555444432221 2579999999999975432211
Q ss_pred hhhc-------ccCCcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 453 NKVG-------NSFNDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 453 ~~l~-------~~~~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
+.+. ....+++++||++|.|+++|++++...+.
T Consensus 147 ~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 147 KKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 1111 12357999999999999999999988764
No 132
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.79 E-value=1.8e-18 Score=158.50 Aligned_cols=152 Identities=22% Similarity=0.236 Sum_probs=106.9
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|++|||||||+|++.+...... ..+.++.+.....+..++ ..+.+|||||...+... ...+++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~~ 71 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSI--------TPSYYR 71 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHH--------HHHHhc
Confidence 5899999999999999999999876432 334444455555555543 67889999998654433 334578
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhc-ccCCcEEEEeccCCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVG-NSFNDHVFTCAVTGQG 472 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~-~~~~~~i~iSAktg~G 472 (564)
++|++++|+|++++.+......|....... ...+.|+++|+||+|+........ ..+. ....+++++||++|.|
T Consensus 72 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 149 (159)
T cd00154 72 GAHGAILVYDITNRESFENLDKWLKELKEY--APENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGEN 149 (159)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 899999999999865555554443322221 124689999999999963222221 2222 2346899999999999
Q ss_pred HHHHHHHHH
Q 008468 473 IQDLETAIM 481 (564)
Q Consensus 473 I~eL~~~L~ 481 (564)
+++++++|.
T Consensus 150 i~~~~~~i~ 158 (159)
T cd00154 150 VEELFQSLA 158 (159)
T ss_pred HHHHHHHHh
Confidence 999999875
No 133
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=8.5e-19 Score=163.05 Aligned_cols=155 Identities=17% Similarity=0.153 Sum_probs=120.7
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCee--eEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVP--VTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~--i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+|++++|+.|||||+|+-+++.+.+..+.+ .....+.....+.+++.+ +.+|||+|++.+... ...+++
T Consensus 7 fKyIiiGd~gVGKSclllrf~~krF~~~hd-~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv--------~~syYr 77 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKRFQPVHD-LTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSV--------TRSYYR 77 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccCcccccc-ceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHH--------HHHHhc
Confidence 899999999999999999999998764444 334456777778888765 578999999877654 346699
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhccc-CCcEEEEeccCCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGNS-FNDHVFTCAVTGQG 472 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~~-~~~~i~iSAktg~G 472 (564)
.|-.+|+|||+++..++..+..|-. ...+....+..+++++||+||...+.+.. +.+++. ...+.++||+++.|
T Consensus 78 ~a~GalLVydit~r~sF~hL~~wL~--D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~ 155 (216)
T KOG0098|consen 78 GAAGALLVYDITRRESFNHLTSWLE--DARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAEN 155 (216)
T ss_pred cCcceEEEEEccchhhHHHHHHHHH--HHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhh
Confidence 9999999999999999988765533 22223356888999999999987766554 455543 34578999999999
Q ss_pred HHHHHHHHHHHh
Q 008468 473 IQDLETAIMKIV 484 (564)
Q Consensus 473 I~eL~~~L~~~l 484 (564)
+++.|......+
T Consensus 156 VEEaF~nta~~I 167 (216)
T KOG0098|consen 156 VEEAFINTAKEI 167 (216)
T ss_pred HHHHHHHHHHHH
Confidence 999998877655
No 134
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.78 E-value=2.3e-18 Score=165.27 Aligned_cols=153 Identities=20% Similarity=0.220 Sum_probs=106.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+..||+++|++|||||||+++|.+..... +.+ |.......+.+++..+.+|||||...+... ...++.
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~---~~~-T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~--------~~~~~~ 85 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQ---HVP-TLHPTSEELTIGNIKFKTFDLGGHEQARRL--------WKDYFP 85 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcc---cCC-ccCcceEEEEECCEEEEEEECCCCHHHHHH--------HHHHhc
Confidence 45899999999999999999999876432 222 233344567778899999999997544322 234578
Q ss_pred cCcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhcc-----------------
Q 008468 397 GADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGN----------------- 457 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~----------------- 457 (564)
.+|++++|+|+++..+.... ..+..+.... ...+.|+++|+||+|+........ +.+..
T Consensus 86 ~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~--~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (190)
T cd00879 86 EVDGIVFLVDAADPERFQESKEELDSLLSDE--ELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGI 163 (190)
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHHcCc--cccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCc
Confidence 99999999999886554433 2333333221 124689999999999975333222 11111
Q ss_pred cCCcEEEEeccCCCCHHHHHHHHHHH
Q 008468 458 SFNDHVFTCAVTGQGIQDLETAIMKI 483 (564)
Q Consensus 458 ~~~~~i~iSAktg~GI~eL~~~L~~~ 483 (564)
...+++++||++|.|+++++++|.+.
T Consensus 164 ~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 164 RPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred eeEEEEEeEecCCCChHHHHHHHHhh
Confidence 11357999999999999999999764
No 135
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.78 E-value=2.6e-18 Score=159.54 Aligned_cols=149 Identities=22% Similarity=0.256 Sum_probs=105.4
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCc
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGAD 399 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD 399 (564)
||+++|.+|||||||++++++...... .+ |.......+.+++..+.+|||||...+.... ..++..+|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~--~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~~~~~ 68 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTT--IP--TIGFNVETVEYKNVSFTVWDVGGQDKIRPLW--------KHYYENTN 68 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCC--CC--CcCcceEEEEECCEEEEEEECCCChhhHHHH--------HHHhccCC
Confidence 689999999999999999999873321 12 2222334456678899999999987654432 24578899
Q ss_pred EEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhc-----ccCCcEEEEeccCCC
Q 008468 400 VIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVG-----NSFNDHVFTCAVTGQ 471 (564)
Q Consensus 400 ~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~-----~~~~~~i~iSAktg~ 471 (564)
++++|+|++++.+.... ..+..+.... ...+.|+++|+||+|+........ +.+. ....+++++||++|.
T Consensus 69 ~~i~v~D~~~~~~~~~~~~~~~~~~~~~--~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 146 (158)
T cd00878 69 GIIFVVDSSDRERIEEAKEELHKLLNEE--ELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGD 146 (158)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhCc--ccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCC
Confidence 99999999987655544 3333333322 134789999999999976543222 2211 223579999999999
Q ss_pred CHHHHHHHHHH
Q 008468 472 GIQDLETAIMK 482 (564)
Q Consensus 472 GI~eL~~~L~~ 482 (564)
|+++++++|..
T Consensus 147 gv~~~~~~l~~ 157 (158)
T cd00878 147 GLDEGLDWLLQ 157 (158)
T ss_pred CHHHHHHHHhh
Confidence 99999998864
No 136
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.78 E-value=1.9e-18 Score=162.39 Aligned_cols=153 Identities=24% Similarity=0.193 Sum_probs=107.1
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEE--CCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTV--CGVPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~--~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|.+|||||||+|+|.+..+. ..++.+..+. .....+ .+..+.+|||||..+..... ..++.
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~~~ 69 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFP--ENVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQDRANL--------AAEIR 69 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--ccCCCcccce-EeeeeecCCeEEEEEEeCCCchhhhHHH--------hhhcc
Confidence 48999999999999999999988753 3344433222 222233 44678899999986554332 23468
Q ss_pred cCcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCCcch---h--hhhcc---cCCcEEEEec
Q 008468 397 GADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE---W--NKVGN---SFNDHVFTCA 467 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~---~--~~l~~---~~~~~i~iSA 467 (564)
.+|++++|+|++++.++++. ..|....... ..+.|+++|+||+|+.+..... . ..+.. ...+++++||
T Consensus 70 ~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~---~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 146 (166)
T cd01893 70 KANVICLVYSVDRPSTLERIRTKWLPLIRRL---GVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSA 146 (166)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEecc
Confidence 89999999999988777764 3444333221 2378999999999997654421 1 11211 1247899999
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 008468 468 VTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 468 ktg~GI~eL~~~L~~~l~ 485 (564)
++|.|++++++.+.+.+.
T Consensus 147 ~~~~~v~~lf~~~~~~~~ 164 (166)
T cd01893 147 KTLINVSEVFYYAQKAVL 164 (166)
T ss_pred ccccCHHHHHHHHHHHhc
Confidence 999999999999988763
No 137
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.78 E-value=4.7e-18 Score=169.22 Aligned_cols=165 Identities=27% Similarity=0.348 Sum_probs=126.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchh----HHHHhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDD----IVEKIGVERSE 392 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~----~ie~~~i~~~~ 392 (564)
+-+.|+++|.||||||||.|.++|...+.++..+.||+..+.+.++-+..++.|+||||+..... ..+.--.+..+
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~ 150 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPR 150 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHH
Confidence 34789999999999999999999999999999999999999999999999999999999974321 11111233456
Q ss_pred hhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-------------------h
Q 008468 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-------------------N 453 (564)
Q Consensus 393 ~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-------------------~ 453 (564)
.++..||++++|+|+++.-..-..+.+..+... ...|-|+|+||+|.......-. +
T Consensus 151 ~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y-----s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~ 225 (379)
T KOG1423|consen 151 DAAQNADCVVVVVDASATRTPLHPRVLHMLEEY-----SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE 225 (379)
T ss_pred HHHhhCCEEEEEEeccCCcCccChHHHHHHHHH-----hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence 678999999999999975555555555554443 3579999999999865432110 1
Q ss_pred hhc--------------ccCCcEEEEeccCCCCHHHHHHHHHHHhhc
Q 008468 454 KVG--------------NSFNDHVFTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 454 ~l~--------------~~~~~~i~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
++. ..|..+|.+||++|+||+++.++|...+..
T Consensus 226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 111 013458999999999999999999988754
No 138
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.78 E-value=2.9e-18 Score=159.33 Aligned_cols=149 Identities=21% Similarity=0.248 Sum_probs=100.3
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEE-CCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTV-CGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGA 398 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~-~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~a 398 (564)
+|+++|++|||||||+|+|.+.++. ...|.+. .....+.. ....+.+|||||.......+ ..++..+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~--~~~~t~~--~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~~~~~~ 68 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV--TTIPTVG--FNVEMLQLEKHLSLTVWDVGGQEKMRTVW--------KCYLENT 68 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc--cccCccC--cceEEEEeCCceEEEEEECCCCHhHHHHH--------HHHhccC
Confidence 5899999999999999999998753 2333222 22223333 34689999999986544332 2347889
Q ss_pred cEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhc-c-----cCCcEEEEeccC
Q 008468 399 DVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVG-N-----SFNDHVFTCAVT 469 (564)
Q Consensus 399 D~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~-~-----~~~~~i~iSAkt 469 (564)
|++++|+|++++.+..... .+..+.... ...+.|+++|+||+|+........ ..+. . ...+++++||++
T Consensus 69 ~~iv~v~D~~~~~~~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~ 146 (160)
T cd04156 69 DGLVYVVDSSDEARLDESQKELKHILKNE--HIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVT 146 (160)
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhch--hhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEeccccc
Confidence 9999999999876554432 233333221 124789999999999964322221 1111 1 113588999999
Q ss_pred CCCHHHHHHHHHH
Q 008468 470 GQGIQDLETAIMK 482 (564)
Q Consensus 470 g~GI~eL~~~L~~ 482 (564)
|.|+++++++|.+
T Consensus 147 ~~gv~~~~~~i~~ 159 (160)
T cd04156 147 GEGLAEAFRKLAS 159 (160)
T ss_pred CCChHHHHHHHhc
Confidence 9999999998864
No 139
>PLN03108 Rab family protein; Provisional
Probab=99.78 E-value=4.9e-18 Score=166.57 Aligned_cols=156 Identities=16% Similarity=0.106 Sum_probs=112.4
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+|+|++|||||||+|+|++.++.. ...+....+.....+.+++. .+.+|||+|...+... ...++
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~-~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~--------~~~~~ 76 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI--------TRSYY 76 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH--------HHHHh
Confidence 4899999999999999999999887542 23344445555556667664 4679999997654332 23457
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
..+|++++|+|+++..++.....|.. +... ...+.|+++|+||+|+........ +++.+ ...+++++||++|
T Consensus 77 ~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~---~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 153 (210)
T PLN03108 77 RGAAGALLVYDITRRETFNHLASWLEDARQH---ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA 153 (210)
T ss_pred ccCCEEEEEEECCcHHHHHHHHHHHHHHHHh---cCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 88999999999999877776544432 3222 234789999999999976543322 23332 3357999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 008468 471 QGIQDLETAIMKIVG 485 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~ 485 (564)
.|++++|+++.+.+.
T Consensus 154 ~~v~e~f~~l~~~~~ 168 (210)
T PLN03108 154 QNVEEAFIKTAAKIY 168 (210)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999887763
No 140
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.78 E-value=8.5e-18 Score=184.17 Aligned_cols=161 Identities=27% Similarity=0.349 Sum_probs=125.5
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGA 398 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~a 398 (564)
.+|+++|+||||||||+|+|+|.+. .|+++||+|.+..+..+..++..+.++|.||........+.+.+.|....-.++
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q-~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~ 82 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKP 82 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCc-eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCC
Confidence 5799999999999999999999874 699999999999999999999999999999998654444444444444334678
Q ss_pred cEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcc-cCCcEEEEeccCCCCHHH
Q 008468 399 DVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGN-SFNDHVFTCAVTGQGIQD 475 (564)
Q Consensus 399 D~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~-~~~~~i~iSAktg~GI~e 475 (564)
|+++-|+|+++- ..+...--++.+ .+.|+++++|++|......... +++.+ ...|++++||++|.|+++
T Consensus 83 D~ivnVvDAtnL--eRnLyltlQLlE------~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~ 154 (653)
T COG0370 83 DLIVNVVDATNL--ERNLYLTLQLLE------LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEE 154 (653)
T ss_pred CEEEEEcccchH--HHHHHHHHHHHH------cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHH
Confidence 999999999872 222222223333 3789999999999977654433 44444 347999999999999999
Q ss_pred HHHHHHHHhhccC
Q 008468 476 LETAIMKIVGLHQ 488 (564)
Q Consensus 476 L~~~L~~~l~~~~ 488 (564)
+++.+.+....+.
T Consensus 155 l~~~i~~~~~~~~ 167 (653)
T COG0370 155 LKRAIIELAESKT 167 (653)
T ss_pred HHHHHHHhccccc
Confidence 9999988765433
No 141
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.78 E-value=4.5e-18 Score=161.72 Aligned_cols=151 Identities=25% Similarity=0.242 Sum_probs=111.8
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceec---------------cccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHH
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVT---------------EIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVE 384 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs---------------~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie 384 (564)
+|+|+|.+|+|||||+|+|++....... ...++|.+.....+.+.+..+.+|||||+.++...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~-- 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSE-- 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHH--
Confidence 4899999999999999999987654211 23455666666667778889999999998655433
Q ss_pred HhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh------hhhcc-
Q 008468 385 KIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW------NKVGN- 457 (564)
Q Consensus 385 ~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~------~~l~~- 457 (564)
...++..+|++++|+|++++......+.+..+.. .+.|+++|+||+|+........ +.+..
T Consensus 79 ------~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~------~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~ 146 (189)
T cd00881 79 ------VIRGLSVSDGAILVVDANEGVQPQTREHLRIARE------GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLI 146 (189)
T ss_pred ------HHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH------CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccc
Confidence 2344778999999999998776666555554433 3689999999999986332211 11111
Q ss_pred -------------cCCcEEEEeccCCCCHHHHHHHHHHHh
Q 008468 458 -------------SFNDHVFTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 458 -------------~~~~~i~iSAktg~GI~eL~~~L~~~l 484 (564)
...+++++||++|.|+++++++|.+.+
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 147 GFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred cccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 246789999999999999999998876
No 142
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.78 E-value=4.2e-18 Score=160.47 Aligned_cols=152 Identities=21% Similarity=0.263 Sum_probs=104.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+.++|+|+|++|||||||+++|.+.......+..+ .....+.+++..+.+|||||...+...+ ..+++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g----~~~~~i~~~~~~~~~~D~~G~~~~~~~~--------~~~~~ 80 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHITPTQG----FNIKTVQSDGFKLNVWDIGGQRAIRPYW--------RNYFE 80 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCC----cceEEEEECCEEEEEEECCCCHHHHHHH--------HHHhc
Confidence 36899999999999999999999976532222222 2334556678899999999986543332 23478
Q ss_pred cCcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhc-----ccCCcEEEEecc
Q 008468 397 GADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVG-----NSFNDHVFTCAV 468 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~-----~~~~~~i~iSAk 468 (564)
.+|++++|+|+++..+.... ..+..+.... ...+.|+++++||+|+........ +.+. ....+++++||+
T Consensus 81 ~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~ 158 (173)
T cd04155 81 NTDCLIYVIDSADKKRLEEAGAELVELLEEE--KLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAK 158 (173)
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHhCh--hhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECC
Confidence 89999999999875544433 2233332221 123689999999999976443221 1111 111246899999
Q ss_pred CCCCHHHHHHHHHH
Q 008468 469 TGQGIQDLETAIMK 482 (564)
Q Consensus 469 tg~GI~eL~~~L~~ 482 (564)
+|.|+++++++|.+
T Consensus 159 ~~~gi~~~~~~l~~ 172 (173)
T cd04155 159 TGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCHHHHHHHHhc
Confidence 99999999999865
No 143
>PRK04213 GTP-binding protein; Provisional
Probab=99.78 E-value=6.1e-18 Score=163.97 Aligned_cols=156 Identities=25% Similarity=0.268 Sum_probs=101.9
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchh----HHHHhhhhh---
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDD----IVEKIGVER--- 390 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~----~ie~~~i~~--- 390 (564)
.++|+++|++|||||||+|+|.+..+ .++..+++|++.... .++ .+.+|||||+..... ..+.+....
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCceEE--eec--ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 47999999999999999999999875 466788888875533 333 689999999743221 112211100
Q ss_pred hhhhhhcCcEEEEEecCCCCCCh-----------hHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcccC
Q 008468 391 SEAVALGADVIIMTVSAVDGWTS-----------EDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSF 459 (564)
Q Consensus 391 ~~~~l~~aD~vl~ViD~s~~~s~-----------~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~~~ 459 (564)
....+..+|++++|+|.+..... .+.+++..+.. .++|+++|+||+|+........+++.+.+
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~ 157 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE------LGIPPIVAVNKMDKIKNRDEVLDEIAERL 157 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH------cCCCeEEEEECccccCcHHHHHHHHHHHh
Confidence 11123457899999998653211 12222333222 36899999999999754411112222111
Q ss_pred ----------CcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 460 ----------NDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 460 ----------~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
.+++++||++| |+++++++|.+.+.
T Consensus 158 ~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 158 GLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred cCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 25799999999 99999999998764
No 144
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.77 E-value=4.1e-18 Score=165.40 Aligned_cols=153 Identities=20% Similarity=0.152 Sum_probs=103.1
Q ss_pred CcEEEEEcCCCCChhHHHH-HhhcCCc---ceeccccCeeE--EEEEEE--------EEECC--eeeEEEeCCCCCCchh
Q 008468 318 GLQIAIVGRPNVGKSSLLN-AWSKSER---AIVTEIAGTTR--DVIEAS--------VTVCG--VPVTLLDTAGIRETDD 381 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN-~L~~~~~---~~vs~~~gtT~--d~~~~~--------~~~~g--~~i~LiDTpG~~~~~~ 381 (564)
.+||+++|.+|||||||++ ++.+..+ .+...+.+|.. +..... +.++| ..+.||||+|..+.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 3799999999999999996 5554422 12334444442 221111 13455 45678999998542
Q ss_pred HHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCC-------------
Q 008468 382 IVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPS------------- 447 (564)
Q Consensus 382 ~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~------------- 447 (564)
. ...+++++|++++|||++++.++++.. .|....... ..+.|+++|+||+||...
T Consensus 80 ~--------~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~---~~~~piilvgNK~DL~~~~~~~~~~~~~~~~ 148 (195)
T cd01873 80 D--------RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF---CPRVPVILVGCKLDLRYADLDEVNRARRPLA 148 (195)
T ss_pred h--------hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh---CCCCCEEEEEEchhccccccchhhhcccccc
Confidence 1 123588999999999999998888774 454332221 246899999999999642
Q ss_pred ------Ccchh---hhhcc-cCCcEEEEeccCCCCHHHHHHHHHHH
Q 008468 448 ------ASNEW---NKVGN-SFNDHVFTCAVTGQGIQDLETAIMKI 483 (564)
Q Consensus 448 ------~~~~~---~~l~~-~~~~~i~iSAktg~GI~eL~~~L~~~ 483 (564)
..... +++++ ...+++++||++|.||+++|+.+.+.
T Consensus 149 ~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 149 RPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 11111 33333 33579999999999999999998764
No 145
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=2.2e-17 Score=166.85 Aligned_cols=217 Identities=22% Similarity=0.259 Sum_probs=145.9
Q ss_pred hHhHHHHHHHhhhhHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHH
Q 008468 227 SQAENVEKLISAKSVAAADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENAL 306 (564)
Q Consensus 227 ~qaEai~~lI~A~t~~~~~~A~~~~~G~ls~~i~~lr~~l~~~~a~~Ea~idf~ed~~~~~~~~l~~~l~~l~~~l~~ll 306 (564)
..-|++..|-.|++..++.+..++.-|.+.+.++.+.+.|.-+ ...+..+..+
T Consensus 109 l~~eYi~~lk~a~~~~~~~~lrR~a~GR~aSiik~i~~~L~fL--------------------------~~~r~~l~~L- 161 (346)
T COG1084 109 LAREYIRLLKAAKDPKEANQLRRQAFGRVASIIKKIDDDLEFL--------------------------RKARDHLKKL- 161 (346)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhhHHHHHH--------------------------HHHHHHHhcC-
Confidence 3345666666666666666666666666666555444422211 1112222211
Q ss_pred HHhhhhhhhcCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCc----hhH
Q 008468 307 ETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRET----DDI 382 (564)
Q Consensus 307 ~~~~~~~~~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~----~~~ 382 (564)
.....+...|+|.|+||||||||++.+++.+. .+.+||+||.....+++..++..+.++||||+-+- .+.
T Consensus 162 -----P~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~ 235 (346)
T COG1084 162 -----PAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNE 235 (346)
T ss_pred -----CCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcH
Confidence 11223558999999999999999999999985 57999999999999999999999999999999742 233
Q ss_pred HHHhhhhhhhhhh-hcCcEEEEEecCCC--CCChh-HHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhc
Q 008468 383 VEKIGVERSEAVA-LGADVIIMTVSAVD--GWTSE-DSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVG 456 (564)
Q Consensus 383 ie~~~i~~~~~~l-~~aD~vl~ViD~s~--~~s~~-~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~ 456 (564)
+|... ..++ .-.++|+|++|++. +.+.+ +..++..+...+ +.|+++|+||+|..+....+. ..+.
T Consensus 236 IE~qA----i~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f-----~~p~v~V~nK~D~~~~e~~~~~~~~~~ 306 (346)
T COG1084 236 IERQA----ILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF-----KAPIVVVINKIDIADEEKLEEIEASVL 306 (346)
T ss_pred HHHHH----HHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc-----CCCeEEEEecccccchhHHHHHHHHHH
Confidence 44332 2222 34689999999985 44444 345666666543 479999999999986554443 1222
Q ss_pred cc-CCcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 457 NS-FNDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 457 ~~-~~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
.. ......+|+..+.+++.+.+.+...+.
T Consensus 307 ~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~ 336 (346)
T COG1084 307 EEGGEEPLKISATKGCGLDKLREEVRKTAL 336 (346)
T ss_pred hhccccccceeeeehhhHHHHHHHHHHHhh
Confidence 22 233577899999999999888877653
No 146
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.77 E-value=6e-18 Score=158.61 Aligned_cols=151 Identities=26% Similarity=0.285 Sum_probs=105.0
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|++|||||||+|+|++..+. ..+.++..+.....+..++ ..+.+|||||+.++.... ...++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~--------~~~~~ 70 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP--TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLR--------PLSYP 70 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccc--------hhhcC
Confidence 58999999999999999999998752 3344444444444555554 457899999987653321 13368
Q ss_pred cCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcch-----------h---hhhcc-c-C
Q 008468 397 GADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASNE-----------W---NKVGN-S-F 459 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~-----------~---~~l~~-~-~ 459 (564)
.+|++++|+|++++.++.... .|...... ...+.|+++|+||+|+....... . ..+.. . .
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 147 (171)
T cd00157 71 NTDVFLICFSVDSPSSFENVKTKWIPEIRH---YCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGA 147 (171)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHh---hCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCC
Confidence 899999999999876665532 22222221 12378999999999997655321 1 11211 1 2
Q ss_pred CcEEEEeccCCCCHHHHHHHHHH
Q 008468 460 NDHVFTCAVTGQGIQDLETAIMK 482 (564)
Q Consensus 460 ~~~i~iSAktg~GI~eL~~~L~~ 482 (564)
.+++++||++|.|++++++.|.+
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 148 IGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred eEEEEeecCCCCCHHHHHHHHhh
Confidence 37999999999999999999865
No 147
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.77 E-value=1.2e-17 Score=191.08 Aligned_cols=159 Identities=23% Similarity=0.281 Sum_probs=119.3
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHH----Hhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVE----KIGVERSEA 393 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie----~~~i~~~~~ 393 (564)
.++|+++|+||||||||+|+|++... .+++++|+|.+.....+.+++.++.++||||+.+.....+ .+.+.+...
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 37899999999999999999999875 6899999999999999999999999999999986532111 111222222
Q ss_pred hhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhccc-CCcEEEEeccCC
Q 008468 394 VALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGNS-FNDHVFTCAVTG 470 (564)
Q Consensus 394 ~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~~-~~~~i~iSAktg 470 (564)
....+|++++|+|+++.. .+...+.++.+ .++|+++|+||+|+.+...... +++.+. ..+++++||++|
T Consensus 82 ~~~~aD~vI~VvDat~le--r~l~l~~ql~e------~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 82 LSGDADLLINVVDASNLE--RNLYLTLQLLE------LGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred hccCCCEEEEEecCCcch--hhHHHHHHHHH------cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecC
Confidence 235899999999998742 23333444433 3689999999999875443322 344432 368999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 008468 471 QGIQDLETAIMKIVG 485 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~ 485 (564)
+|++++++.+.+...
T Consensus 154 ~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 154 RGIEALKLAIDRHQA 168 (772)
T ss_pred CCHHHHHHHHHHhhh
Confidence 999999999988653
No 148
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.77 E-value=7.8e-18 Score=159.98 Aligned_cols=156 Identities=20% Similarity=0.230 Sum_probs=111.4
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
.||+|+|++|||||||++++++..+ +..+.+++.+.....+.+++ ..+.+|||||..++.... ..++.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~~~ 71 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF--VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILP--------QKYSI 71 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--ccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHH--------HHHHh
Confidence 5899999999999999999998764 34455555544455566665 446899999987654332 23477
Q ss_pred cCcEEEEEecCCCCCChhHHHH-HHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhccc-CCcEEEEeccCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSEL-LNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGNS-FNDHVFTCAVTGQ 471 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~-l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~~-~~~~i~iSAktg~ 471 (564)
.+|++++|+|.++..+++.... +..+.... ...+.|+|+|+||+|+........ ..+... ..+++++||++|.
T Consensus 72 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 149 (180)
T cd04137 72 GIHGYILVYSVTSRKSFEVVKVIYDKILDML--GKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENE 149 (180)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 8999999999998766665543 34443321 124679999999999975432221 222222 2578999999999
Q ss_pred CHHHHHHHHHHHhhc
Q 008468 472 GIQDLETAIMKIVGL 486 (564)
Q Consensus 472 GI~eL~~~L~~~l~~ 486 (564)
|+.++++++.+.+..
T Consensus 150 gv~~l~~~l~~~~~~ 164 (180)
T cd04137 150 NVEEAFELLIEEIEK 164 (180)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987753
No 149
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.76 E-value=6.5e-18 Score=159.52 Aligned_cols=153 Identities=24% Similarity=0.216 Sum_probs=106.9
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
.||+|+|++|||||||++++.+..+. ..+.+|..+.....+.+++. .+.+|||+|..++.... ..++.
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~~~ 71 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR--------PLSYP 71 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhcc--------ccccC
Confidence 58999999999999999999997753 44555555544455666654 56899999986544321 13478
Q ss_pred cCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcch------------h---hhhccc--
Q 008468 397 GADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASNE------------W---NKVGNS-- 458 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~------------~---~~l~~~-- 458 (564)
++|++++|+|+++..++++.. .|...... ...+.|+++|+||+|+.+..... . +++...
T Consensus 72 ~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~ 148 (175)
T cd01870 72 DTDVILMCFSIDSPDSLENIPEKWTPEVKH---FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIG 148 (175)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHh---hCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcC
Confidence 899999999999876665552 23322221 12478999999999986532210 0 122221
Q ss_pred CCcEEEEeccCCCCHHHHHHHHHHHh
Q 008468 459 FNDHVFTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 459 ~~~~i~iSAktg~GI~eL~~~L~~~l 484 (564)
..+++++||++|.|++++++++.+.+
T Consensus 149 ~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 149 AFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred CcEEEEeccccCcCHHHHHHHHHHHh
Confidence 23689999999999999999998754
No 150
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.76 E-value=7.5e-18 Score=156.90 Aligned_cols=153 Identities=22% Similarity=0.275 Sum_probs=115.9
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCee-EEEEEEEEEECCee--eEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTT-RDVIEASVTVCGVP--VTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT-~d~~~~~~~~~g~~--i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
||+++|++|||||||+++|.+..+. ..+..|. .+.....+.+++.+ +.+|||+|...+.... ...+.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~--------~~~~~ 70 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFP--ENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLR--------DIFYR 70 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTT--SSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHH--------HHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHhhccc--cccccccccccccccccccccccccccccccccccccccc--------ccccc
Confidence 7999999999999999999998753 4444444 77777888887755 6789999987655432 23488
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTGQG 472 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg~G 472 (564)
++|++++|+|.++..++.....|........ ..+.|+++|+||.|+.+...... +.+.. ...+++++||+++.|
T Consensus 71 ~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~--~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~ 148 (162)
T PF00071_consen 71 NSDAIIIVFDVTDEESFENLKKWLEEIQKYK--PEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGEN 148 (162)
T ss_dssp TESEEEEEEETTBHHHHHTHHHHHHHHHHHS--TTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTT
T ss_pred ccccccccccccccccccccccccccccccc--cccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCC
Confidence 9999999999999888877765554333221 23689999999999987444332 33332 236899999999999
Q ss_pred HHHHHHHHHHHh
Q 008468 473 IQDLETAIMKIV 484 (564)
Q Consensus 473 I~eL~~~L~~~l 484 (564)
+.++|..+.+.+
T Consensus 149 v~~~f~~~i~~i 160 (162)
T PF00071_consen 149 VKEIFQELIRKI 160 (162)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998865
No 151
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.76 E-value=4.5e-18 Score=154.32 Aligned_cols=157 Identities=20% Similarity=0.143 Sum_probs=120.8
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccC-eeEEEEEEEEEECCee--eEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAG-TTRDVIEASVTVCGVP--VTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~g-tT~d~~~~~~~~~g~~--i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
.+||.++|.+|||||||+-++..+.+. ...|. ...|+....+.++|.. +.||||+|++.+... +-.|
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd--~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtL--------TpSy 80 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFD--DLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTL--------TPSY 80 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccC--ccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhcc--------CHhH
Confidence 489999999999999999999998753 22222 3467788888888854 578999999877644 3467
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
++.|..+|+|||++.+.++..+..|..-...+. ..++.-.++|+||+|....+.... ..++. ..+-++++|||+.
T Consensus 81 yRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ys-tn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~ 159 (209)
T KOG0080|consen 81 YRGAQGIILVYDVTSRDTFVKLDIWLKELDLYS-TNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTR 159 (209)
T ss_pred hccCceeEEEEEccchhhHHhHHHHHHHHHhhc-CCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhh
Confidence 999999999999999999988877766444432 234556789999999876555443 23333 3356899999999
Q ss_pred CCHHHHHHHHHHHhh
Q 008468 471 QGIQDLETAIMKIVG 485 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~ 485 (564)
+|++..|+.+.+.+-
T Consensus 160 ~~V~~~FeelveKIi 174 (209)
T KOG0080|consen 160 ENVQCCFEELVEKII 174 (209)
T ss_pred ccHHHHHHHHHHHHh
Confidence 999999999988764
No 152
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.76 E-value=1.3e-17 Score=153.08 Aligned_cols=149 Identities=19% Similarity=0.219 Sum_probs=103.0
Q ss_pred EEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcE
Q 008468 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADV 400 (564)
Q Consensus 321 I~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~ 400 (564)
|+|+|++|||||||+|+|.+.++. ....|.+..+. ..+..++..+.+|||||...+...+ ..++..+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~~~~d~ 70 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS-EDTIPTVGFNM--RKVTKGNVTLKVWDLGGQPRFRSMW--------ERYCRGVNA 70 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC-cCccCCCCcce--EEEEECCEEEEEEECCCCHhHHHHH--------HHHHhcCCE
Confidence 799999999999999999998753 23334333332 2355677889999999986554432 244789999
Q ss_pred EEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhh-----cccCCcEEEEeccCCCC
Q 008468 401 IIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKV-----GNSFNDHVFTCAVTGQG 472 (564)
Q Consensus 401 vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l-----~~~~~~~i~iSAktg~G 472 (564)
+++|+|+++..+.... ..+..+... ....+.|+++|+||+|+........ +.+ .....+++++||++|.|
T Consensus 71 ii~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 148 (159)
T cd04159 71 IVYVVDAADRTALEAAKNELHDLLEK--PSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTN 148 (159)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHcC--hhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCC
Confidence 9999999875444332 233333321 1124689999999999876543221 111 11224689999999999
Q ss_pred HHHHHHHHHH
Q 008468 473 IQDLETAIMK 482 (564)
Q Consensus 473 I~eL~~~L~~ 482 (564)
+++++++|.+
T Consensus 149 i~~l~~~l~~ 158 (159)
T cd04159 149 IDIVLDWLIK 158 (159)
T ss_pred hHHHHHHHhh
Confidence 9999999865
No 153
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.76 E-value=1.6e-17 Score=161.83 Aligned_cols=149 Identities=13% Similarity=0.095 Sum_probs=107.8
Q ss_pred EcCCCCChhHHHHHhhcCCcceeccccCe-eEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcE
Q 008468 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGT-TRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVALGADV 400 (564)
Q Consensus 324 vG~~nvGKSSLlN~L~~~~~~~vs~~~gt-T~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~ 400 (564)
+|.+|||||||+++++...+. ..+..| ..+.....+.+++ ..+.||||+|...+.... ..+++.+|+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~--~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~--------~~~~~~ad~ 70 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFE--KKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLR--------DGYYIQGQC 70 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCC--CCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhh--------HHHhcCCCE
Confidence 599999999999999976642 333333 2445445555554 567899999997765443 245899999
Q ss_pred EEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhc-ccCCcEEEEeccCCCCHHHHH
Q 008468 401 IIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVG-NSFNDHVFTCAVTGQGIQDLE 477 (564)
Q Consensus 401 vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~-~~~~~~i~iSAktg~GI~eL~ 477 (564)
+|+|||++++.++.....|.. +... ..+.|+++|+||+|+........ ..+. .....++++||++|.||+++|
T Consensus 71 ~ilV~D~t~~~S~~~i~~w~~~i~~~----~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F 146 (200)
T smart00176 71 AIIMFDVTARVTYKNVPNWHRDLVRV----CENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPF 146 (200)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHh----CCCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 999999999888877765554 3332 24789999999999864322111 1222 233579999999999999999
Q ss_pred HHHHHHhhc
Q 008468 478 TAIMKIVGL 486 (564)
Q Consensus 478 ~~L~~~l~~ 486 (564)
++|.+.+..
T Consensus 147 ~~l~~~i~~ 155 (200)
T smart00176 147 LWLARKLIG 155 (200)
T ss_pred HHHHHHHHh
Confidence 999987743
No 154
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.76 E-value=3.1e-17 Score=149.44 Aligned_cols=151 Identities=28% Similarity=0.299 Sum_probs=106.2
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|.+|+|||||+|+|++.. ......++++.+.....+.+++ ..+.+|||||..++...... ...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~--------~~~ 72 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRL--------YYR 72 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHH--------HHh
Confidence 799999999999999999999988 5667778899998888888888 77899999998766544322 245
Q ss_pred cCcEEEEEecCCCC-CChhHH--HHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcc-cCCcEEEEeccCC
Q 008468 397 GADVIIMTVSAVDG-WTSEDS--ELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 397 ~aD~vl~ViD~s~~-~s~~~~--~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~-~~~~~i~iSAktg 470 (564)
.++.++.++|.... .+..+. .....+.... ..+.|+++|+||+|+........ ..+.. ...+++++||++|
T Consensus 73 ~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 149 (161)
T TIGR00231 73 AVESSLRVFDIVILVLDVEEILEKQTKEIIHHA---ESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETG 149 (161)
T ss_pred hhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhc---ccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCC
Confidence 56666666666544 222221 1122222221 12689999999999976432221 11211 2356999999999
Q ss_pred CCHHHHHHHHH
Q 008468 471 QGIQDLETAIM 481 (564)
Q Consensus 471 ~GI~eL~~~L~ 481 (564)
.|+++++++|.
T Consensus 150 ~gv~~~~~~l~ 160 (161)
T TIGR00231 150 KNIDSAFKIVE 160 (161)
T ss_pred CCHHHHHHHhh
Confidence 99999998874
No 155
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.76 E-value=1.1e-17 Score=152.72 Aligned_cols=136 Identities=23% Similarity=0.234 Sum_probs=91.2
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCc
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGAD 399 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD 399 (564)
||+++|++|||||||+|+|.+..+. +.+|. .+.+.+ .+|||||...... .+ .......++++|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~~t~------~~~~~~---~~iDt~G~~~~~~---~~-~~~~~~~~~~ad 64 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YKKTQ------AVEYND---GAIDTPGEYVENR---RL-YSALIVTAADAD 64 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----cccce------eEEEcC---eeecCchhhhhhH---HH-HHHHHHHhhcCC
Confidence 7999999999999999999988642 22221 122222 6899999732111 11 111123478999
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcch-h-hhhc-cc-CCcEEEEeccCCCCHHH
Q 008468 400 VIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE-W-NKVG-NS-FNDHVFTCAVTGQGIQD 475 (564)
Q Consensus 400 ~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~-~-~~l~-~~-~~~~i~iSAktg~GI~e 475 (564)
++++|+|++++.++.+..++. .. ..|+++|+||+|+.+..... . +++. .. ..+++++||++|.|+++
T Consensus 65 ~vilv~d~~~~~s~~~~~~~~-~~--------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 135 (142)
T TIGR02528 65 VIALVQSATDPESRFPPGFAS-IF--------VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEA 135 (142)
T ss_pred EEEEEecCCCCCcCCChhHHH-hc--------cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHH
Confidence 999999999988776533222 11 24999999999996532211 1 2222 22 24789999999999999
Q ss_pred HHHHHH
Q 008468 476 LETAIM 481 (564)
Q Consensus 476 L~~~L~ 481 (564)
+++++.
T Consensus 136 l~~~l~ 141 (142)
T TIGR02528 136 LVDYLN 141 (142)
T ss_pred HHHHHh
Confidence 998874
No 156
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.76 E-value=1.2e-17 Score=161.43 Aligned_cols=143 Identities=24% Similarity=0.242 Sum_probs=99.4
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceecc---------------ccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHH
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTE---------------IAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVE 384 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~---------------~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie 384 (564)
+|+++|.+|||||||+|+|++....+... ..++|.+.....+..++..+.+|||||+.++....
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~- 82 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV- 82 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH-
Confidence 79999999999999999999732222222 24556666666677788999999999997765443
Q ss_pred HhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh----hhhc----
Q 008468 385 KIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW----NKVG---- 456 (564)
Q Consensus 385 ~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~----~~l~---- 456 (564)
..+++.+|++++|+|++++........+..+.. .+.|+++|+||+|+........ .++.
T Consensus 83 -------~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 149 (194)
T cd01891 83 -------ERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE------LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELG 149 (194)
T ss_pred -------HHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH------cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhC
Confidence 345889999999999988644433333333322 2689999999999975433211 1111
Q ss_pred ----ccCCcEEEEeccCCCCHHHH
Q 008468 457 ----NSFNDHVFTCAVTGQGIQDL 476 (564)
Q Consensus 457 ----~~~~~~i~iSAktg~GI~eL 476 (564)
....+++++||++|.|+.++
T Consensus 150 ~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 150 ATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred CccccCccCEEEeehhcccccccc
Confidence 11357899999999887544
No 157
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.76 E-value=1.3e-17 Score=157.28 Aligned_cols=149 Identities=18% Similarity=0.194 Sum_probs=104.1
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCc
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGAD 399 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD 399 (564)
+|+++|++|||||||+++|.+... ..+.+| .......+..++..+.+|||||...+... ...+++.+|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~---~~~~~t-~g~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~a~ 68 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIP---KKVAPT-VGFTPTKLRLDKYEVCIFDLGGGANFRGI--------WVNYYAEAH 68 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCC---ccccCc-ccceEEEEEECCEEEEEEECCCcHHHHHH--------HHHHHcCCC
Confidence 489999999999999999997621 222222 22334456778899999999998655433 235689999
Q ss_pred EEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-------hhhccc---CCcEEEEecc
Q 008468 400 VIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-------NKVGNS---FNDHVFTCAV 468 (564)
Q Consensus 400 ~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-------~~l~~~---~~~~i~iSAk 468 (564)
++++|+|+++..+..+.. .+..+.... ...+.|+++|+||+|+........ +.+.+. ...++++||+
T Consensus 69 ~ii~V~D~s~~~s~~~~~~~l~~l~~~~--~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~ 146 (167)
T cd04161 69 GLVFVVDSSDDDRVQEVKEILRELLQHP--RVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAI 146 (167)
T ss_pred EEEEEEECCchhHHHHHHHHHHHHHcCc--cccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEce
Confidence 999999999876666543 333343321 124689999999999976653221 122211 1356779999
Q ss_pred CC------CCHHHHHHHHHH
Q 008468 469 TG------QGIQDLETAIMK 482 (564)
Q Consensus 469 tg------~GI~eL~~~L~~ 482 (564)
+| .|+++.++||.+
T Consensus 147 ~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 147 EGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred eCCCCccccCHHHHHHHHhc
Confidence 98 899999999864
No 158
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.75 E-value=1.5e-17 Score=158.77 Aligned_cols=149 Identities=22% Similarity=0.263 Sum_probs=101.8
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC-cceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCch---hHHHHhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE-RAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD---DIVEKIGVERS 391 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~-~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~---~~ie~~~i~~~ 391 (564)
+..++|+|+|++|+|||||+|+|++.. ...+++.+++|.+.....+ + ..+.+|||||+.... ...+.+. ...
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~-~~~ 91 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQ-KLI 91 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHH-HHH
Confidence 455899999999999999999999976 4456778888887654433 3 379999999986321 1111111 001
Q ss_pred hhhh---hcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--h----hhcccC--C
Q 008468 392 EAVA---LGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--N----KVGNSF--N 460 (564)
Q Consensus 392 ~~~l---~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~----~l~~~~--~ 460 (564)
..++ ..+|++++|+|++++.+..+.+.+..+.. .++|+++|+||+|+........ + .+.... .
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~------~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRE------RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP 165 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence 1223 34689999999998887777766655432 2689999999999975432221 1 222221 3
Q ss_pred cEEEEeccCCCCHH
Q 008468 461 DHVFTCAVTGQGIQ 474 (564)
Q Consensus 461 ~~i~iSAktg~GI~ 474 (564)
+++++||++|+|++
T Consensus 166 ~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 166 SVQLFSSLKKTGID 179 (179)
T ss_pred ceEEEECCCCCCCC
Confidence 79999999999974
No 159
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.75 E-value=2e-17 Score=155.64 Aligned_cols=146 Identities=18% Similarity=0.216 Sum_probs=102.4
Q ss_pred EEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcE
Q 008468 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADV 400 (564)
Q Consensus 321 I~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~ 400 (564)
|+++|++|||||||++++.+..+. ..+.+|.. .....+..++..+.+|||||...+...+. .+++.+|+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~--~~~~pt~g-~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~--------~~~~~ad~ 70 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL--ESVVPTTG-FNSVAIPTQDAIMELLEIGGSQNLRKYWK--------RYLSGSQG 70 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc--ccccccCC-cceEEEeeCCeEEEEEECCCCcchhHHHH--------HHHhhCCE
Confidence 799999999999999999987542 33333321 12234556778899999999877654432 45899999
Q ss_pred EEEEecCCCCCChhHHHH-HHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-------hhhcc-cCCcEEEEeccC--
Q 008468 401 IIMTVSAVDGWTSEDSEL-LNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-------NKVGN-SFNDHVFTCAVT-- 469 (564)
Q Consensus 401 vl~ViD~s~~~s~~~~~~-l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-------~~l~~-~~~~~i~iSAkt-- 469 (564)
+++|+|.+++.++..... +..+... ..+.|+++|+||+|+........ +.+.+ ....++++||++
T Consensus 71 ii~V~D~t~~~s~~~~~~~l~~~~~~----~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~ 146 (164)
T cd04162 71 LIFVVDSADSERLPLARQELHQLLQH----PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDG 146 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhC----CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCC
Confidence 999999998765554432 2333321 25789999999999976544321 22222 234578888888
Q ss_pred ----CCCHHHHHHHHH
Q 008468 470 ----GQGIQDLETAIM 481 (564)
Q Consensus 470 ----g~GI~eL~~~L~ 481 (564)
++||+++|+.+.
T Consensus 147 s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 147 SPSRMEAVKDLLSQLI 162 (164)
T ss_pred ChhHHHHHHHHHHHHh
Confidence 999999998875
No 160
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.74 E-value=7.2e-17 Score=155.32 Aligned_cols=159 Identities=24% Similarity=0.318 Sum_probs=109.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC-cceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCch---hHHHHhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE-RAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD---DIVEKIGVERSE 392 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~-~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~---~~ie~~~i~~~~ 392 (564)
..++|+|+|.+|||||||+|+|++.+ ...++..+++|++...... +.++.||||||+.... ...+.+ .....
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~-~~~~~ 98 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKW-QKLIE 98 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHH-HHHHH
Confidence 45899999999999999999999975 4556677888877654332 4689999999975321 111111 11111
Q ss_pred hhh---hcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhh----cccCCcEE
Q 008468 393 AVA---LGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKV----GNSFNDHV 463 (564)
Q Consensus 393 ~~l---~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l----~~~~~~~i 463 (564)
.++ ..++++++|+|.+.+.+..+.+.+..+.. .+.|+++++||+|+.+...... +.+ .....+++
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~------~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 172 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE------YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI 172 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH------cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence 223 34578899999888766655444444322 3679999999999976433221 111 11245789
Q ss_pred EEeccCCCCHHHHHHHHHHHhh
Q 008468 464 FTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 464 ~iSAktg~GI~eL~~~L~~~l~ 485 (564)
++||++|.|++++++.|.+.+.
T Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 173 LFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EEEcCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999988764
No 161
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.74 E-value=1.8e-17 Score=185.51 Aligned_cols=151 Identities=28% Similarity=0.335 Sum_probs=112.3
Q ss_pred cCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEE
Q 008468 325 GRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMT 404 (564)
Q Consensus 325 G~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~V 404 (564)
|+||||||||+|+|++... .++++|++|.+.....+.+++..+.+|||||+.+.....+...+.+.......+|++++|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~V 79 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNV 79 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEE
Confidence 8999999999999999875 688999999999999999999999999999998654332222222222223579999999
Q ss_pred ecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhccc-CCcEEEEeccCCCCHHHHHHHHH
Q 008468 405 VSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGNS-FNDHVFTCAVTGQGIQDLETAIM 481 (564)
Q Consensus 405 iD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~~-~~~~i~iSAktg~GI~eL~~~L~ 481 (564)
+|+++.. .+.....++.+ .++|+++|+||+|+.+...... +.+.+. ..+++++||++|.|++++++.+.
T Consensus 80 vDat~le--r~l~l~~ql~~------~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 80 VDASNLE--RNLYLTLQLLE------LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred ecCCcch--hhHHHHHHHHh------cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 9998732 22233333322 3689999999999865443221 333332 36899999999999999999998
Q ss_pred HHh
Q 008468 482 KIV 484 (564)
Q Consensus 482 ~~l 484 (564)
+..
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 765
No 162
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.74 E-value=4.3e-17 Score=148.53 Aligned_cols=154 Identities=36% Similarity=0.435 Sum_probs=115.2
Q ss_pred EEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEEC-CeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEE
Q 008468 323 IVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC-GVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVI 401 (564)
Q Consensus 323 IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~-g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~v 401 (564)
|+|++|+|||||+|+|++......+..+++|.+........+ +..+.+|||||+.+........ ......++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~-~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRER-EELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhH-HHHHHHHHHhCCEE
Confidence 589999999999999999877667788888888877777766 7789999999998654332211 12334567899999
Q ss_pred EEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhh-------hhcccCCcEEEEeccCCCCHH
Q 008468 402 IMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWN-------KVGNSFNDHVFTCAVTGQGIQ 474 (564)
Q Consensus 402 l~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~-------~l~~~~~~~i~iSAktg~GI~ 474 (564)
++|+|+++.........+.... ..+.|+++|+||+|+......... .......+++++||+++.|++
T Consensus 80 l~v~~~~~~~~~~~~~~~~~~~------~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~ 153 (163)
T cd00880 80 LFVVDADLRADEEEEKLLELLR------ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGID 153 (163)
T ss_pred EEEEeCCCCCCHHHHHHHHHHH------hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHH
Confidence 9999999887666554222222 236899999999999875543321 011234679999999999999
Q ss_pred HHHHHHHHH
Q 008468 475 DLETAIMKI 483 (564)
Q Consensus 475 eL~~~L~~~ 483 (564)
++++++.+.
T Consensus 154 ~l~~~l~~~ 162 (163)
T cd00880 154 ELREALIEA 162 (163)
T ss_pred HHHHHHHhh
Confidence 999998764
No 163
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.74 E-value=2.6e-17 Score=154.30 Aligned_cols=142 Identities=21% Similarity=0.139 Sum_probs=94.7
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCc
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGAD 399 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD 399 (564)
+|+++|.+|||||||+|+|.+.... . ..|.. +.+.+. .+|||||+.......... ....+..+|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~---~~~~~-----v~~~~~--~~iDtpG~~~~~~~~~~~----~~~~~~~ad 66 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--A---RKTQA-----VEFNDK--GDIDTPGEYFSHPRWYHA----LITTLQDVD 66 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--C---ccceE-----EEECCC--CcccCCccccCCHHHHHH----HHHHHhcCC
Confidence 6999999999999999999886521 1 12221 222222 269999986433222111 123478999
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhc-ccC--CcEEEEeccCCCCHHHH
Q 008468 400 VIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVG-NSF--NDHVFTCAVTGQGIQDL 476 (564)
Q Consensus 400 ~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~-~~~--~~~i~iSAktg~GI~eL 476 (564)
++++|+|++++.+......+. . ..+.|+++++||+|+.........++. ... .+++++||++|.|++++
T Consensus 67 ~il~v~d~~~~~s~~~~~~~~----~----~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l 138 (158)
T PRK15467 67 MLIYVHGANDPESRLPAGLLD----I----GVSKRQIAVISKTDMPDADVAATRKLLLETGFEEPIFELNSHDPQSVQQL 138 (158)
T ss_pred EEEEEEeCCCcccccCHHHHh----c----cCCCCeEEEEEccccCcccHHHHHHHHHHcCCCCCEEEEECCCccCHHHH
Confidence 999999999876554322221 1 135789999999998653322212222 222 48999999999999999
Q ss_pred HHHHHHHhh
Q 008468 477 ETAIMKIVG 485 (564)
Q Consensus 477 ~~~L~~~l~ 485 (564)
++++.+.+.
T Consensus 139 ~~~l~~~~~ 147 (158)
T PRK15467 139 VDYLASLTK 147 (158)
T ss_pred HHHHHHhch
Confidence 999988774
No 164
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=2.5e-17 Score=156.47 Aligned_cols=157 Identities=20% Similarity=0.208 Sum_probs=122.4
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCee--eEEEeCCCCCCchhHHHHhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVP--VTLLDTAGIRETDDIVEKIGVERSEA 393 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~--i~LiDTpG~~~~~~~ie~~~i~~~~~ 393 (564)
...+||+++|+++||||-|+.++..+++.. ...+....++....+.+++.. ..||||+|++.+... .-.
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~-~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAi--------tSa 82 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAI--------TSA 82 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCc-ccccceeEEEEeeceeecCcEEEEeeecccchhhhccc--------cch
Confidence 345899999999999999999999999864 445556677777788888865 479999999877644 235
Q ss_pred hhhcCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEecc
Q 008468 394 VALGADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAV 468 (564)
Q Consensus 394 ~l~~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAk 468 (564)
|++.|.++++|||++...+++....|- .+.. ....++++++|+||+||...+.... ..+++ ....++++||.
T Consensus 83 YYrgAvGAllVYDITr~~Tfenv~rWL~ELRd---had~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl 159 (222)
T KOG0087|consen 83 YYRGAVGALLVYDITRRQTFENVERWLKELRD---HADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSAL 159 (222)
T ss_pred hhcccceeEEEEechhHHHHHHHHHHHHHHHh---cCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEeccc
Confidence 699999999999999999998775443 3443 3456899999999999987544433 33333 33568999999
Q ss_pred CCCCHHHHHHHHHHHh
Q 008468 469 TGQGIQDLETAIMKIV 484 (564)
Q Consensus 469 tg~GI~eL~~~L~~~l 484 (564)
.+.|+++.|+.+...+
T Consensus 160 ~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 160 DATNVEKAFERVLTEI 175 (222)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999998877765
No 165
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.73 E-value=4.2e-17 Score=162.62 Aligned_cols=162 Identities=27% Similarity=0.324 Sum_probs=114.3
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCc
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGAD 399 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD 399 (564)
+|+++|++|||||||+|+|++... .+.+++++|.+...+.+.+++..+.+|||||+.+........ .......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~-~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~-~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS-EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGR-GRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhH-HHHHHHhhccCC
Confidence 789999999999999999999863 578899999998888889999999999999986533111111 111234688999
Q ss_pred EEEEEecCCCCCChhH------------------------------------------HHHHHHHHhccc----------
Q 008468 400 VIIMTVSAVDGWTSED------------------------------------------SELLNRIQSNKK---------- 427 (564)
Q Consensus 400 ~vl~ViD~s~~~s~~~------------------------------------------~~~l~~l~~~~~---------- 427 (564)
++++|+|++++....+ .+....++..+.
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 9999999976432111 011111111110
Q ss_pred ------------cCCCCCCEEEEEecCCCCCCCcchhhhhcccCCcEEEEeccCCCCHHHHHHHHHHHhhc
Q 008468 428 ------------STESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 428 ------------~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
......|+++|+||+|+.+.... +.+.. ..+++++||++|.|++++++.|.+.+..
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~--~~~~~-~~~~~~~SA~~g~gi~~l~~~i~~~L~~ 227 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEEL--DLLAR-QPNSVVISAEKGLNLDELKERIWDKLGL 227 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHH--HHHhc-CCCEEEEcCCCCCCHHHHHHHHHHHhCc
Confidence 01123689999999999754322 23333 2468999999999999999999987743
No 166
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.73 E-value=7.8e-18 Score=162.08 Aligned_cols=152 Identities=30% Similarity=0.357 Sum_probs=113.5
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcce-----------------eccccCeeEEEEEEEEE--ECCeeeEEEeCCCCCCc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAI-----------------VTEIAGTTRDVIEASVT--VCGVPVTLLDTAGIRET 379 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~-----------------vs~~~gtT~d~~~~~~~--~~g~~i~LiDTpG~~~~ 379 (564)
.+|+++|+.++|||||+++|++..... .....+.|.+.....+. .++..+.++||||..++
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f 83 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHEDF 83 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHHH
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccce
Confidence 689999999999999999999654221 01124556666666677 88999999999998654
Q ss_pred hhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-h----h
Q 008468 380 DDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-N----K 454 (564)
Q Consensus 380 ~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~----~ 454 (564)
... ....+..+|++|+|+|+.++...+..+.+..+... +.|+|+|+||+|+........ + .
T Consensus 84 ~~~--------~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~------~~p~ivvlNK~D~~~~~~~~~~~~~~~~ 149 (188)
T PF00009_consen 84 IKE--------MIRGLRQADIAILVVDANDGIQPQTEEHLKILREL------GIPIIVVLNKMDLIEKELEEIIEEIKEK 149 (188)
T ss_dssp HHH--------HHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT------T-SEEEEEETCTSSHHHHHHHHHHHHHH
T ss_pred eec--------ccceecccccceeeeeccccccccccccccccccc------ccceEEeeeeccchhhhHHHHHHHHHHH
Confidence 332 22347899999999999999888888877776554 689999999999983221111 1 2
Q ss_pred hc-----c--cCCcEEEEeccCCCCHHHHHHHHHHHh
Q 008468 455 VG-----N--SFNDHVFTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 455 l~-----~--~~~~~i~iSAktg~GI~eL~~~L~~~l 484 (564)
+. . ...+++++||++|.|+++|++.|.+.+
T Consensus 150 l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 150 LLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred hccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 21 1 135799999999999999999998875
No 167
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.73 E-value=4.5e-17 Score=156.51 Aligned_cols=154 Identities=24% Similarity=0.230 Sum_probs=107.1
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
.||+|+|++|+|||||++++....+. ..+..+..+.....+.+++. .+.+|||+|...+.... ...+.
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~--------~~~~~ 71 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFP--EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLR--------PLSYS 71 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcccceEEEEEEECCEEEEEEEEECCCChhccccc--------hhhcC
Confidence 58999999999999999999866542 33444445554555666664 46789999986553321 12368
Q ss_pred cCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCc----------chh---hhhcccC--C
Q 008468 397 GADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSAS----------NEW---NKVGNSF--N 460 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~----------~~~---~~l~~~~--~ 460 (564)
.+|++++|+|+++..++.+.. .|...... ...+.|+++|+||+|+.+... ... ..+.+.+ .
T Consensus 72 ~a~~~llv~~i~~~~s~~~~~~~~~~~i~~---~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (187)
T cd04129 72 KAHVILIGFAVDTPDSLENVRTKWIEEVRR---YCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAK 148 (187)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHH---hCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCc
Confidence 899999999998877766653 23332221 124689999999999854211 101 2233322 4
Q ss_pred cEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 461 DHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 461 ~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
+++++||++|.|++++++.+.+.+.
T Consensus 149 ~~~e~Sa~~~~~v~~~f~~l~~~~~ 173 (187)
T cd04129 149 KYMECSALTGEGVDDVFEAATRAAL 173 (187)
T ss_pred EEEEccCCCCCCHHHHHHHHHHHHh
Confidence 7999999999999999999998764
No 168
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.72 E-value=7.9e-17 Score=153.58 Aligned_cols=155 Identities=22% Similarity=0.277 Sum_probs=113.4
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
++.+||+++|..||||||++++|...+.. ...| |.......+.+++..+.+||.+|.......+ ..++
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~--~~~p--T~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w--------~~y~ 79 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS--ETIP--TIGFNIEEIKYKGYSLTIWDLGGQESFRPLW--------KSYF 79 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE--EEEE--ESSEEEEEEEETTEEEEEEEESSSGGGGGGG--------GGGH
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc--ccCc--ccccccceeeeCcEEEEEEeccccccccccc--------eeec
Confidence 45589999999999999999999976532 2222 3344556677899999999999987665543 3558
Q ss_pred hcCcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-------hhhc-ccCCcEEEEe
Q 008468 396 LGADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-------NKVG-NSFNDHVFTC 466 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-------~~l~-~~~~~~i~iS 466 (564)
..+|++|||+|+++.....+. +.+..+..... ..+.|+++++||+|+.+...... ..+. .....++.+|
T Consensus 80 ~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~--~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~s 157 (175)
T PF00025_consen 80 QNADGIIFVVDSSDPERLQEAKEELKELLNDPE--LKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCS 157 (175)
T ss_dssp TTESEEEEEEETTGGGGHHHHHHHHHHHHTSGG--GTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEB
T ss_pred cccceeEEEEecccceeecccccchhhhcchhh--cccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeee
Confidence 899999999999986544433 44555554322 24789999999999977544332 1222 2234578999
Q ss_pred ccCCCCHHHHHHHHHHHh
Q 008468 467 AVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 467 Aktg~GI~eL~~~L~~~l 484 (564)
|++|+|+.+.+++|.+.+
T Consensus 158 a~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 158 AKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp TTTTBTHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHhcC
Confidence 999999999999998753
No 169
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.72 E-value=3e-17 Score=147.08 Aligned_cols=154 Identities=22% Similarity=0.217 Sum_probs=120.5
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
++.+|+|++|||||||+-++..+.++ -+.+..+..|....++.++|. ++.||||+|.+.+..+.. .+++
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs-~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtits--------tyyr 79 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFS-GSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITS--------TYYR 79 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccc-cceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHH--------HHcc
Confidence 67789999999999999999998764 244455567888888888875 567899999987765533 4589
Q ss_pred cCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhc-ccCCcEEEEeccCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVG-NSFNDHVFTCAVTGQ 471 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~-~~~~~~i~iSAktg~ 471 (564)
..+++++|||++++.++.+...|- .+.. .+...|-++|+||.|+.+...... ..++ ......|++|||...
T Consensus 80 gthgv~vVYDVTn~ESF~Nv~rWLeei~~----ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~ 155 (198)
T KOG0079|consen 80 GTHGVIVVYDVTNGESFNNVKRWLEEIRN----NCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENE 155 (198)
T ss_pred CCceEEEEEECcchhhhHhHHHHHHHHHh----cCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcc
Confidence 999999999999999998875443 3332 355789999999999987665543 2232 234678999999999
Q ss_pred CHHHHHHHHHHHhh
Q 008468 472 GIQDLETAIMKIVG 485 (564)
Q Consensus 472 GI~eL~~~L~~~l~ 485 (564)
|++..|.-|.+.+.
T Consensus 156 NvE~mF~cit~qvl 169 (198)
T KOG0079|consen 156 NVEAMFHCITKQVL 169 (198)
T ss_pred cchHHHHHHHHHHH
Confidence 99999999988763
No 170
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.72 E-value=3.2e-17 Score=160.58 Aligned_cols=144 Identities=17% Similarity=0.162 Sum_probs=102.0
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceecc------------------------------ccCeeEEEEEEEEEECCeeeE
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTE------------------------------IAGTTRDVIEASVTVCGVPVT 369 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~------------------------------~~gtT~d~~~~~~~~~g~~i~ 369 (564)
+|+|+|++|+|||||+|+|+.....++++ ..++|++.....+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999998766544321 267899988888889999999
Q ss_pred EEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCc
Q 008468 370 LLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449 (564)
Q Consensus 370 LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~ 449 (564)
||||||+.++... ....+..+|++++|+|++.+...++...+..+... ...++|+|+||+|+.....
T Consensus 81 liDTpG~~~~~~~--------~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~-----~~~~iIvviNK~D~~~~~~ 147 (208)
T cd04166 81 IADTPGHEQYTRN--------MVTGASTADLAILLVDARKGVLEQTRRHSYILSLL-----GIRHVVVAVNKMDLVDYSE 147 (208)
T ss_pred EEECCcHHHHHHH--------HHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHc-----CCCcEEEEEEchhcccCCH
Confidence 9999998654321 12347899999999999987665554444433221 1235788999999975332
Q ss_pred chh-------hhhccc----CCcEEEEeccCCCCHHHH
Q 008468 450 NEW-------NKVGNS----FNDHVFTCAVTGQGIQDL 476 (564)
Q Consensus 450 ~~~-------~~l~~~----~~~~i~iSAktg~GI~eL 476 (564)
... +++... ..+++++||++|.|+.+.
T Consensus 148 ~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 148 EVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 110 111111 235899999999998854
No 171
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.72 E-value=2.1e-17 Score=165.59 Aligned_cols=163 Identities=23% Similarity=0.279 Sum_probs=124.7
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCee-eEEEeCCCCCCchhHHHHhhhhhhhhhhhc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVP-VTLLDTAGIRETDDIVEKIGVERSEAVALG 397 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~-i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~ 397 (564)
..|.+||.||+|||||+|+|...+. .|.+|++||.......+.+++.. +.+-|.||+.+...+...+|..-.+ .++.
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLr-HiER 274 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLR-HIER 274 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHH-HHHh
Confidence 5699999999999999999999875 68999999999988888887765 9999999998765554555544433 4788
Q ss_pred CcEEEEEecCCCC---CChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcccC--CcEEEEeccCCCC
Q 008468 398 ADVIIMTVSAVDG---WTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSF--NDHVFTCAVTGQG 472 (564)
Q Consensus 398 aD~vl~ViD~s~~---~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~~~--~~~i~iSAktg~G 472 (564)
++.++||+|.+.+ ...++.+.+..-+..+.....+.|.++|+||+|+.+......+++.+.. ..++++||++++|
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pvsA~~~eg 354 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPVSAKSGEG 354 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCCcEEEeeeccccc
Confidence 9999999999987 4445555444444444444567899999999999643322113444433 3489999999999
Q ss_pred HHHHHHHHHHH
Q 008468 473 IQDLETAIMKI 483 (564)
Q Consensus 473 I~eL~~~L~~~ 483 (564)
+.+|++.|.+.
T Consensus 355 l~~ll~~lr~~ 365 (366)
T KOG1489|consen 355 LEELLNGLREL 365 (366)
T ss_pred hHHHHHHHhhc
Confidence 99999988653
No 172
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.72 E-value=1.2e-16 Score=178.03 Aligned_cols=152 Identities=26% Similarity=0.354 Sum_probs=116.0
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe-eeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV-PVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~-~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
....+|+++|++|+|||||+++|.+..+. ....+++|.+.....+.+++. .+.||||||+.++..+.. ..
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~-~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~--------rg 155 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVA-QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRA--------RG 155 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcc-cccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHH--------hh
Confidence 44578999999999999999999987754 355678888887777787554 899999999987765432 33
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhcc------c---CCcEEE
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGN------S---FNDHVF 464 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~------~---~~~~i~ 464 (564)
+..+|++++|+|++++...+..+.+..... .+.|+++++||+|+........ +.+.. . ..++++
T Consensus 156 a~~aDiaILVVda~dgv~~qT~e~i~~~~~------~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~ 229 (587)
T TIGR00487 156 AKVTDIVVLVVAADDGVMPQTIEAISHAKA------ANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVP 229 (587)
T ss_pred hccCCEEEEEEECCCCCCHhHHHHHHHHHH------cCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEE
Confidence 788999999999998877777666654432 3689999999999965332111 12111 1 136899
Q ss_pred EeccCCCCHHHHHHHHHH
Q 008468 465 TCAVTGQGIQDLETAIMK 482 (564)
Q Consensus 465 iSAktg~GI~eL~~~L~~ 482 (564)
+||++|.|+++++++|..
T Consensus 230 iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 230 VSALTGDGIDELLDMILL 247 (587)
T ss_pred EECCCCCChHHHHHhhhh
Confidence 999999999999999865
No 173
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.71 E-value=1e-16 Score=155.50 Aligned_cols=157 Identities=22% Similarity=0.252 Sum_probs=126.7
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCee--eEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVP--VTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~--i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+++|.+|||||+|..++++..+ +.+|.+|..|.....+.+++.. +.|+||+|..++..+.+ .++
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f--~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~--------~~~ 72 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRF--VEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRD--------LYI 72 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccc--ccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHH--------Hhh
Confidence 47999999999999999999999884 6789999999999999998754 56899999877766543 448
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhc-ccCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVG-NSFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~-~~~~~~i~iSAktg 470 (564)
..+|++++||++++..++++...+. .+.... .....|+++|+||+|+........ +.+. ...++++++||+.+
T Consensus 73 ~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~--~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~ 150 (196)
T KOG0395|consen 73 RNGDGFLLVYSITDRSSFEEAKQLREQILRVK--GRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLN 150 (196)
T ss_pred ccCcEEEEEEECCCHHHHHHHHHHHHHHHHhh--CcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCC
Confidence 8999999999999999998875444 443322 234589999999999988655554 2333 34467999999999
Q ss_pred CCHHHHHHHHHHHhhc
Q 008468 471 QGIQDLETAIMKIVGL 486 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~~ 486 (564)
.+++++|..|.+.+..
T Consensus 151 ~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 151 YNVDEVFYELVREIRL 166 (196)
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999997754
No 174
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=6.7e-17 Score=144.94 Aligned_cols=154 Identities=21% Similarity=0.196 Sum_probs=117.3
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCee--eEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVP--VTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~--i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|..|||||+|+.+++..-+. ...-.....|+..+++.++|.+ +.+|||+|++.+... +..|++
T Consensus 8 fkivlvgnagvgktclvrrftqglfp-pgqgatigvdfmiktvev~gekiklqiwdtagqerfrsi--------tqsyyr 78 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSI--------TQSYYR 78 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCC-CCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHH--------HHHHhh
Confidence 89999999999999999999987653 3444455678888888998755 578999999877654 346799
Q ss_pred cCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTGQ 471 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg~ 471 (564)
.|+++|+|+|+++..+++-+. ++..+... ...++--|+|+||+|+.+..+... +++.+ .+.-++++||+..+
T Consensus 79 sahalilvydiscqpsfdclpewlreie~y---an~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~ 155 (213)
T KOG0095|consen 79 SAHALILVYDISCQPSFDCLPEWLREIEQY---ANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEAD 155 (213)
T ss_pred hcceEEEEEecccCcchhhhHHHHHHHHHH---hhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchh
Confidence 999999999999988887653 33334332 223455689999999987765543 34433 23457899999999
Q ss_pred CHHHHHHHHHHHh
Q 008468 472 GIQDLETAIMKIV 484 (564)
Q Consensus 472 GI~eL~~~L~~~l 484 (564)
|++.||..+.-.+
T Consensus 156 nve~lf~~~a~rl 168 (213)
T KOG0095|consen 156 NVEKLFLDLACRL 168 (213)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999887654
No 175
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.71 E-value=1.1e-16 Score=141.65 Aligned_cols=115 Identities=35% Similarity=0.528 Sum_probs=90.5
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHH-HhhhhhhhhhhhcC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVE-KIGVERSEAVALGA 398 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie-~~~i~~~~~~l~~a 398 (564)
+|+|+|.+|||||||+|+|++.+...++..+++|++.....+.+++..+.++||||+.+...... ..........+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 68999999999999999999987778999999999998788889999999999999986533222 11233455556899
Q ss_pred cEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEec
Q 008468 399 DVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINK 441 (564)
Q Consensus 399 D~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK 441 (564)
|++++|+|++++....+.++++.+. .++|+++|+||
T Consensus 81 d~ii~vv~~~~~~~~~~~~~~~~l~-------~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPITEDDKNILRELK-------NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSHHHHHHHHHHHH-------TTSEEEEEEES
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHh-------cCCCEEEEEcC
Confidence 9999999987744444445555552 36899999998
No 176
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.1e-16 Score=143.26 Aligned_cols=158 Identities=17% Similarity=0.145 Sum_probs=120.4
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEEC--CeeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC--GVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~--g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
-+|+.|+|+..||||||+-+.++..+.+ .-+.....++..+++--+ ..++.+|||+|++..... +-.++
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~-afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrti--------TTayy 91 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTS-AFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTI--------TTAYY 91 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhcccccc-ceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHH--------HHHHh
Confidence 3799999999999999999999987642 333444555555544333 356789999999765433 34569
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTGQ 471 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg~ 471 (564)
++|+++|+++|.++..++...+-|......+ ...+.|+|+|+||||+.+++.... ..+.+ ....+|++|||.+.
T Consensus 92 RgamgfiLmyDitNeeSf~svqdw~tqIkty--sw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~Ni 169 (193)
T KOG0093|consen 92 RGAMGFILMYDITNEESFNSVQDWITQIKTY--SWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENI 169 (193)
T ss_pred hccceEEEEEecCCHHHHHHHHHHHHHheee--eccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccc
Confidence 9999999999999988888777666544443 456889999999999988776654 23333 23578999999999
Q ss_pred CHHHHHHHHHHHhhc
Q 008468 472 GIQDLETAIMKIVGL 486 (564)
Q Consensus 472 GI~eL~~~L~~~l~~ 486 (564)
|++++|+.+...+..
T Consensus 170 nVk~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 170 NVKQVFERLVDIICD 184 (193)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999999988753
No 177
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.70 E-value=1.3e-16 Score=160.56 Aligned_cols=193 Identities=25% Similarity=0.362 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh----hhhcCC-cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEE
Q 008468 289 NLVMDKIHAMSQDVENALETANYD----KLLQSG-LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTV 363 (564)
Q Consensus 289 ~~l~~~l~~l~~~l~~ll~~~~~~----~~~~~~-ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~ 363 (564)
-.+..+|++++++++.--+....+ ...+.| .+|+++|.|+||||||+|.|++.+ +.+.+|++||...+.+.+.+
T Consensus 29 g~lKaklA~Lr~El~~~~~~~gggg~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~VPG~l~Y 107 (365)
T COG1163 29 GLLKAKLAELREELEKRKSKSGGGGSGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLEY 107 (365)
T ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCcceEeccCCeEEEEEcCCCccHHHHHHHHhCCC-ccccccCceecccccceEee
Confidence 456677777777776641111111 112233 689999999999999999999987 46899999999999999999
Q ss_pred CCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCCh------------------------------
Q 008468 364 CGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTS------------------------------ 413 (564)
Q Consensus 364 ~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~------------------------------ 413 (564)
+|..+.++|+||+.+....-...| ......+++||++++|+|+......
T Consensus 108 ~ga~IQild~Pgii~gas~g~grG-~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~g 186 (365)
T COG1163 108 KGAQIQLLDLPGIIEGASSGRGRG-RQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESG 186 (365)
T ss_pred cCceEEEEcCcccccCcccCCCCc-ceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccC
Confidence 999999999999975432211111 1234558999999999999854321
Q ss_pred ------------hHHHHHHHHHhccccC----------------------CCCCCEEEEEecCCCCCCCcchhhhhcccC
Q 008468 414 ------------EDSELLNRIQSNKKST----------------------ESSTPMILVINKIDCAPSASNEWNKVGNSF 459 (564)
Q Consensus 414 ------------~~~~~l~~l~~~~~~~----------------------~~~~PvIvV~NK~DL~~~~~~~~~~l~~~~ 459 (564)
-+.+.++.++..+... ..-+|.++|.||+|+...... +.+.+.
T Consensus 187 GI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~--~~l~~~- 263 (365)
T COG1163 187 GIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEEL--ERLARK- 263 (365)
T ss_pred CEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHH--HHHHhc-
Confidence 1111122222221111 125789999999999874322 233333
Q ss_pred CcEEEEeccCCCCHHHHHHHHHHHhhc
Q 008468 460 NDHVFTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 460 ~~~i~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
.+++++||+++.|+++|.+.|.+.+..
T Consensus 264 ~~~v~isa~~~~nld~L~e~i~~~L~l 290 (365)
T COG1163 264 PNSVPISAKKGINLDELKERIWDVLGL 290 (365)
T ss_pred cceEEEecccCCCHHHHHHHHHHhhCe
Confidence 389999999999999999999998853
No 178
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.70 E-value=2.3e-16 Score=179.95 Aligned_cols=152 Identities=29% Similarity=0.385 Sum_probs=118.3
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
..+..|+|+|+.|+|||||+++|.+..+. ....+++|.+.....+.+++..++||||||+..+..++. ..+
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~--------rga 358 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRA--------RGA 358 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHH--------hhh
Confidence 45588999999999999999999887653 355678888888788888899999999999988765532 336
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhc------c---cCCcEEEE
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVG------N---SFNDHVFT 465 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~------~---~~~~~i~i 465 (564)
..+|++|+|+|++++...+..+.|..... .++|+|+|+||+|+........ .++. + ...+++++
T Consensus 359 ~~aDiaILVVdAddGv~~qT~e~i~~a~~------~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpv 432 (787)
T PRK05306 359 QVTDIVVLVVAADDGVMPQTIEAINHAKA------AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPV 432 (787)
T ss_pred hhCCEEEEEEECCCCCCHhHHHHHHHHHh------cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEE
Confidence 78999999999999877777776665433 3689999999999965432111 1111 1 12479999
Q ss_pred eccCCCCHHHHHHHHHH
Q 008468 466 CAVTGQGIQDLETAIMK 482 (564)
Q Consensus 466 SAktg~GI~eL~~~L~~ 482 (564)
||++|.|+++|+++|..
T Consensus 433 SAktG~GI~eLle~I~~ 449 (787)
T PRK05306 433 SAKTGEGIDELLEAILL 449 (787)
T ss_pred eCCCCCCchHHHHhhhh
Confidence 99999999999999874
No 179
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.70 E-value=7.6e-16 Score=146.85 Aligned_cols=160 Identities=23% Similarity=0.290 Sum_probs=117.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC-cceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCc---hhHHHHhh--hhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE-RAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRET---DDIVEKIG--VER 390 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~-~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~---~~~ie~~~--i~~ 390 (564)
...-|+++|.+|||||||+|+|+++. .+.++..||.|+......+. + .+.++|.||++-. ....+.++ +..
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~--~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD--D-ELRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec--C-cEEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 44789999999999999999999965 57899999999987765443 3 2889999999732 22222222 111
Q ss_pred hhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh------hhhcccC-C--c
Q 008468 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW------NKVGNSF-N--D 461 (564)
Q Consensus 391 ~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~------~~l~~~~-~--~ 461 (564)
....-.+-.++++++|+.++....|.+.++++... +.|+++|+||+|......... +.+.... . .
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~------~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~ 173 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL------GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQW 173 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc------CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccce
Confidence 11111235678999999999888888888887654 789999999999987654432 1222111 1 2
Q ss_pred EEEEeccCCCCHHHHHHHHHHHhh
Q 008468 462 HVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 462 ~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
++..|+.++.|++++...|.+.+.
T Consensus 174 ~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 174 VVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred EEEEecccccCHHHHHHHHHHHhh
Confidence 788999999999999999988764
No 180
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.69 E-value=5.8e-17 Score=147.57 Aligned_cols=160 Identities=18% Similarity=0.174 Sum_probs=121.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEE-CC--eeeEEEeCCCCCCchhHHHHhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTV-CG--VPVTLLDTAGIRETDDIVEKIGVERSEA 393 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~-~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~ 393 (564)
..+++.++|++-||||||+..++...++..+ -|.+..|+....+++ .| .++.||||+|++.+... ++.
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaels-dptvgvdffarlie~~pg~riklqlwdtagqerfrsi--------tks 77 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELS-DPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSI--------TKS 77 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccC-CCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHH--------HHH
Confidence 3478999999999999999999998877544 355555655555555 34 45678999999877654 456
Q ss_pred hhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccC
Q 008468 394 VALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVT 469 (564)
Q Consensus 394 ~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAkt 469 (564)
|++++-.+++|||.++..+++..+.|-.-.......+.+.-+.+|+.|+||...+.... +.++. ....++++||++
T Consensus 78 yyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~ 157 (213)
T KOG0091|consen 78 YYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKN 157 (213)
T ss_pred HhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccC
Confidence 79999999999999999999988777654333322223334678999999998777654 34443 346799999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 008468 470 GQGIQDLETAIMKIVG 485 (564)
Q Consensus 470 g~GI~eL~~~L~~~l~ 485 (564)
|.|+++-+..|.+.+.
T Consensus 158 g~NVeEAF~mlaqeIf 173 (213)
T KOG0091|consen 158 GCNVEEAFDMLAQEIF 173 (213)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 9999999999887653
No 181
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.68 E-value=3.7e-16 Score=176.82 Aligned_cols=155 Identities=25% Similarity=0.349 Sum_probs=114.4
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEE----CCeeeEEEeCCCCCCchhHHHHhhhhh
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTV----CGVPVTLLDTAGIRETDDIVEKIGVER 390 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~----~g~~i~LiDTpG~~~~~~~ie~~~i~~ 390 (564)
.....+|+|+|++|+|||||+++|.+..+. ....+++|.+...+.+.+ .+..+.||||||+..+..++
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~-~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr------- 312 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIA-QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMR------- 312 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCc-cccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHH-------
Confidence 345678999999999999999999987754 345567776654444444 35789999999986654432
Q ss_pred hhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhcc---------cCC
Q 008468 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGN---------SFN 460 (564)
Q Consensus 391 ~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~---------~~~ 460 (564)
...+..+|++|+|+|++++...+..+.+..+.. .+.|+|+|+||+|+........ +.+.. ...
T Consensus 313 -~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~------~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~v 385 (742)
T CHL00189 313 -SRGANVTDIAILIIAADDGVKPQTIEAINYIQA------ANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDT 385 (742)
T ss_pred -HHHHHHCCEEEEEEECcCCCChhhHHHHHHHHh------cCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCc
Confidence 234788999999999998877777766665533 3689999999999976432211 22211 125
Q ss_pred cEEEEeccCCCCHHHHHHHHHHHh
Q 008468 461 DHVFTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 461 ~~i~iSAktg~GI~eL~~~L~~~l 484 (564)
+++++||++|.|+++|+++|....
T Consensus 386 pvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 386 PMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred eEEEEECCCCCCHHHHHHhhhhhh
Confidence 789999999999999999987654
No 182
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.68 E-value=5.7e-16 Score=173.25 Aligned_cols=154 Identities=23% Similarity=0.249 Sum_probs=114.6
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcc--eeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERA--IVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~--~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+.|+++|++|+|||||+|+|++.... .....+++|.+.....+.+++..+.+|||||+..+... ....+.
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~--------~~~g~~ 72 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISN--------AIAGGG 72 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHH--------HHhhhc
Confidence 46999999999999999999975421 12335688999888888888899999999997544221 234578
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCC-EEEEEecCCCCCCCcchh-----hhhc-c----cCCcEEEE
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTP-MILVINKIDCAPSASNEW-----NKVG-N----SFNDHVFT 465 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~P-vIvV~NK~DL~~~~~~~~-----~~l~-~----~~~~~i~i 465 (564)
.+|++++|+|++++...+..+.+..+.. .++| +|+|+||+|+.+...... .++. . ...+++++
T Consensus 73 ~aD~aILVVDa~~G~~~qT~ehl~il~~------lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~v 146 (581)
T TIGR00475 73 GIDAALLVVDADEGVMTQTGEHLAVLDL------LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKT 146 (581)
T ss_pred cCCEEEEEEECCCCCcHHHHHHHHHHHH------cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEE
Confidence 8999999999999776666655544332 2567 999999999976543211 1211 1 13579999
Q ss_pred eccCCCCHHHHHHHHHHHhhc
Q 008468 466 CAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 466 SAktg~GI~eL~~~L~~~l~~ 486 (564)
||++|.|++++++.|.+.+..
T Consensus 147 SA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 147 SAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred eCCCCCCchhHHHHHHHHHHh
Confidence 999999999999999887653
No 183
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.67 E-value=6e-16 Score=173.26 Aligned_cols=153 Identities=23% Similarity=0.279 Sum_probs=110.9
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcce--------ecc------ccCeeEEEEEEEEEE---CC--eeeEEEeCCCCCCch
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAI--------VTE------IAGTTRDVIEASVTV---CG--VPVTLLDTAGIRETD 380 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~--------vs~------~~gtT~d~~~~~~~~---~g--~~i~LiDTpG~~~~~ 380 (564)
+|+|+|++|+|||||+++|+.....+ +.+ ..|.|.+.....+.+ ++ +.+.||||||+.++.
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 69999999999999999998753221 111 235666655444544 23 678999999998775
Q ss_pred hHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhccc-
Q 008468 381 DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGNS- 458 (564)
Q Consensus 381 ~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~~- 458 (564)
..+. .++..+|++|+|+|++++.+.++...|..+.. .+.|+++|+||+|+........ +++.+.
T Consensus 85 ~~v~--------~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~------~~ipiIiViNKiDl~~~~~~~~~~el~~~l 150 (595)
T TIGR01393 85 YEVS--------RSLAACEGALLLVDAAQGIEAQTLANVYLALE------NDLEIIPVINKIDLPSADPERVKKEIEEVI 150 (595)
T ss_pred HHHH--------HHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH------cCCCEEEEEECcCCCccCHHHHHHHHHHHh
Confidence 5432 45889999999999999888877766655443 2679999999999965432211 223221
Q ss_pred ---CCcEEEEeccCCCCHHHHHHHHHHHhhc
Q 008468 459 ---FNDHVFTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 459 ---~~~~i~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
..+++++||++|.|+++++++|.+.+..
T Consensus 151 g~~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 151 GLDASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred CCCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 1258999999999999999999988754
No 184
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.67 E-value=3.9e-16 Score=158.89 Aligned_cols=144 Identities=16% Similarity=0.140 Sum_probs=104.0
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcc-----ee------------ccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhH
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERA-----IV------------TEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDI 382 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~-----~v------------s~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ 382 (564)
+|+|+|++|+|||||+|+|+..... .+ ....++|.+.....+.+++..+++|||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 4899999999999999999743211 11 124578888888889999999999999998765432
Q ss_pred HHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhcc----
Q 008468 383 VEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGN---- 457 (564)
Q Consensus 383 ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~---- 457 (564)
...+++.+|++++|+|+..+...++...|..+... ++|+++++||+|+........ +++..
T Consensus 81 --------~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~------~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~ 146 (270)
T cd01886 81 --------VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY------NVPRIAFVNKMDRTGADFFRVVEQIREKLGA 146 (270)
T ss_pred --------HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc------CCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 34568899999999999998877777777765542 689999999999976433221 22222
Q ss_pred -cCCcEEEEeccCC-CCHHHHH
Q 008468 458 -SFNDHVFTCAVTG-QGIQDLE 477 (564)
Q Consensus 458 -~~~~~i~iSAktg-~GI~eL~ 477 (564)
.+...+++|+..+ .|+-+++
T Consensus 147 ~~~~~~~Pisa~~~f~g~vd~~ 168 (270)
T cd01886 147 NPVPLQLPIGEEDDFRGVVDLI 168 (270)
T ss_pred CceEEEeccccCCCceEEEEcc
Confidence 2244789999755 3444443
No 185
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.67 E-value=1.9e-15 Score=140.03 Aligned_cols=155 Identities=25% Similarity=0.310 Sum_probs=101.1
Q ss_pred EEEEEcCCCCChhHHHHHhhcCC-cceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchh---HHHHh--hhhhhhh
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSE-RAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDD---IVEKI--GVERSEA 393 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~-~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~---~ie~~--~i~~~~~ 393 (564)
.|+++|++|||||||+|.|++.. ....+..+++|..... +..++ .+.+|||||+..... ..+.+ .......
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 48999999999999999999533 2334555566655433 23333 889999999865311 11111 1111112
Q ss_pred hhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--h----hhc--ccCCcEEEE
Q 008468 394 VALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--N----KVG--NSFNDHVFT 465 (564)
Q Consensus 394 ~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~----~l~--~~~~~~i~i 465 (564)
.....+++++++|.....+..+.+.++.+... +.|+++|+||+|+........ . .+. ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 22456889999999877655555555544432 579999999999965433221 1 121 223578999
Q ss_pred eccCCCCHHHHHHHHHHH
Q 008468 466 CAVTGQGIQDLETAIMKI 483 (564)
Q Consensus 466 SAktg~GI~eL~~~L~~~ 483 (564)
||+++.|+.++++.|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999999875
No 186
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.67 E-value=6.1e-16 Score=150.16 Aligned_cols=141 Identities=19% Similarity=0.154 Sum_probs=102.5
Q ss_pred cEEEEEcCCCCChhHHHHHhhcC------Ccc---------eeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHH
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKS------ERA---------IVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~------~~~---------~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~i 383 (564)
++|+++|++|+|||||+++|++. ... ......++|.+.....+..++..+.++||||+.++...
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~- 81 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN- 81 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH-
Confidence 78999999999999999999864 110 01125678888877777788899999999998643222
Q ss_pred HHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCC-EEEEEecCCCCCCCcchh---hhhcc--
Q 008468 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTP-MILVINKIDCAPSASNEW---NKVGN-- 457 (564)
Q Consensus 384 e~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~P-vIvV~NK~DL~~~~~~~~---~~l~~-- 457 (564)
....+..+|++++|+|+..+...++.+.+..+... ++| +|+|+||+|+........ +++..
T Consensus 82 -------~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~------~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l 148 (195)
T cd01884 82 -------MITGAAQMDGAILVVSATDGPMPQTREHLLLARQV------GVPYIVVFLNKADMVDDEELLELVEMEVRELL 148 (195)
T ss_pred -------HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc------CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHH
Confidence 23457889999999999988777777777766543 566 789999999964322111 11211
Q ss_pred -------cCCcEEEEeccCCCCH
Q 008468 458 -------SFNDHVFTCAVTGQGI 473 (564)
Q Consensus 458 -------~~~~~i~iSAktg~GI 473 (564)
...+++++||++|.|+
T Consensus 149 ~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 149 SKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHhcccccCCeEEEeeCccccCC
Confidence 1257999999999884
No 187
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.67 E-value=3.6e-15 Score=146.50 Aligned_cols=156 Identities=15% Similarity=0.128 Sum_probs=106.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEEC--CeeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC--GVPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~--g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+||+++|++|||||||+++++...+. ....+....+.....+..+ ...+.+|||+|...+.... ..+
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~--------~~~ 78 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFE-KKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLR--------DGY 78 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhh--------HHH
Confidence 3489999999999999999887765532 1122222233333333333 4677899999986654332 234
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhc-ccCCcEEEEeccCCC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVG-NSFNDHVFTCAVTGQ 471 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~-~~~~~~i~iSAktg~ 471 (564)
+..+|++++|+|+++..++.+...|.. +... ..+.|+++|+||+|+........ ..+. .....++++||++|.
T Consensus 79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 154 (215)
T PTZ00132 79 YIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV----CENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNY 154 (215)
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHh----CCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCC
Confidence 778999999999998877776654433 2222 24689999999999864322111 1222 233578999999999
Q ss_pred CHHHHHHHHHHHhh
Q 008468 472 GIQDLETAIMKIVG 485 (564)
Q Consensus 472 GI~eL~~~L~~~l~ 485 (564)
|+++.+.+|.+.+.
T Consensus 155 ~v~~~f~~ia~~l~ 168 (215)
T PTZ00132 155 NFEKPFLWLARRLT 168 (215)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998774
No 188
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.67 E-value=3.7e-16 Score=169.27 Aligned_cols=147 Identities=22% Similarity=0.225 Sum_probs=104.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceec------------------------------cccCeeEEEEEEEEEECCe
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVT------------------------------EIAGTTRDVIEASVTVCGV 366 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs------------------------------~~~gtT~d~~~~~~~~~g~ 366 (564)
..++|+++|++|+|||||+++|+.....+.. ..+|+|++.....+..++.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 3489999999999999999999965443321 1589999999999999999
Q ss_pred eeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCC--CCChhHHHHHHHHHhccccCCCCCCEEEEEecCCC
Q 008468 367 PVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVD--GWTSEDSELLNRIQSNKKSTESSTPMILVINKIDC 444 (564)
Q Consensus 367 ~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~--~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL 444 (564)
.+.||||||+.++.... ...+..+|++++|+|+++ +...+..+.+..+... ...|+++|+||+|+
T Consensus 85 ~i~liDtpG~~~~~~~~--------~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-----~~~~iivviNK~Dl 151 (425)
T PRK12317 85 YFTIVDCPGHRDFVKNM--------ITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-----GINQLIVAINKMDA 151 (425)
T ss_pred EEEEEECCCcccchhhH--------hhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-----CCCeEEEEEEcccc
Confidence 99999999987653221 223678999999999998 5545544444433221 12469999999999
Q ss_pred CCCCcch--h--h---hhcc--c----CCcEEEEeccCCCCHHHH
Q 008468 445 APSASNE--W--N---KVGN--S----FNDHVFTCAVTGQGIQDL 476 (564)
Q Consensus 445 ~~~~~~~--~--~---~l~~--~----~~~~i~iSAktg~GI~eL 476 (564)
....... . + ++.. . ..+++++||++|.|++++
T Consensus 152 ~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 152 VNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred ccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 7532211 0 1 1111 1 246899999999999874
No 189
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=7.3e-16 Score=138.85 Aligned_cols=155 Identities=16% Similarity=0.180 Sum_probs=114.9
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+|++++|+.|.|||+|+.+++.+.+.- ........++-...+.+++. ++.||||+|++.+... ++.|++
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkD-dssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSV--------tRsYYR 80 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKD-DSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSV--------TRSYYR 80 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcc-cccceeeeeecceeeeecCcEEEEEEeecccHHHHHHH--------HHHHhc
Confidence 899999999999999999999887531 11122334555666777664 5678999999877654 567799
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTGQG 472 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg~G 472 (564)
.|-..++|||+++..++..+..|-. .......+++-+|+++||.||....+... ..+.. +..-+.++||++|+|
T Consensus 81 GAAGAlLVYD~TsrdsfnaLtnWL~--DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeN 158 (214)
T KOG0086|consen 81 GAAGALLVYDITSRDSFNALTNWLT--DARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGEN 158 (214)
T ss_pred cccceEEEEeccchhhHHHHHHHHH--HHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeeccccccc
Confidence 9999999999999988887654432 22222346778899999999988777654 23332 223578999999999
Q ss_pred HHHHHHHHHHHh
Q 008468 473 IQDLETAIMKIV 484 (564)
Q Consensus 473 I~eL~~~L~~~l 484 (564)
+++.|-...+.+
T Consensus 159 VEEaFl~c~~tI 170 (214)
T KOG0086|consen 159 VEEAFLKCARTI 170 (214)
T ss_pred HHHHHHHHHHHH
Confidence 999887766654
No 190
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.66 E-value=1e-15 Score=149.39 Aligned_cols=154 Identities=20% Similarity=0.124 Sum_probs=97.1
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCc--ceeccccCeeEEEEEEEEEEC---------------------------C----
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSER--AIVTEIAGTTRDVIEASVTVC---------------------------G---- 365 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~--~~vs~~~gtT~d~~~~~~~~~---------------------------g---- 365 (564)
++|+++|+.|+|||||+.+|.+... .......+.|.......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999976521 000111122221111111111 2
Q ss_pred --eeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCC-CChhHHHHHHHHHhccccCCCCCCEEEEEecC
Q 008468 366 --VPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDG-WTSEDSELLNRIQSNKKSTESSTPMILVINKI 442 (564)
Q Consensus 366 --~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~-~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~ 442 (564)
..+.||||||..++.. .....+..+|++++|+|++++ ...+..+.+..+... ...|+++|+||+
T Consensus 81 ~~~~i~~iDtPG~~~~~~--------~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-----~~~~iiivvNK~ 147 (203)
T cd01888 81 LVRHVSFVDCPGHEILMA--------TMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-----GLKHIIIVQNKI 147 (203)
T ss_pred cccEEEEEECCChHHHHH--------HHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-----CCCcEEEEEEch
Confidence 6789999999743321 233456789999999999974 233334444443221 124799999999
Q ss_pred CCCCCCcchh--hhh---cc----cCCcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 443 DCAPSASNEW--NKV---GN----SFNDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 443 DL~~~~~~~~--~~l---~~----~~~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
|+........ +.+ .. ...+++++||++|.|+++|++.|.+.+.
T Consensus 148 Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 148 DLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred hccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 9975432211 111 11 1357899999999999999999988764
No 191
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.65 E-value=6.3e-15 Score=134.70 Aligned_cols=154 Identities=17% Similarity=0.212 Sum_probs=118.4
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhc
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALG 397 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~ 397 (564)
.++|.|+|..|+||||++++|.+.....++ .|..+...++.+++..+.+||..|+......+ +.|+..
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~i~----pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W--------~nYfes 83 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTDTIS----PTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYW--------KNYFES 83 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCccccC----CccceeeEEEEecceEEEEEEcCCcchhHHHH--------HHhhhc
Confidence 599999999999999999999998743322 34566677788899999999999998776664 466999
Q ss_pred CcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-------hhh-cccCCcEEEEecc
Q 008468 398 ADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-------NKV-GNSFNDHVFTCAV 468 (564)
Q Consensus 398 aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-------~~l-~~~~~~~i~iSAk 468 (564)
+|++|||+|.+++...++. ..+..++...+ -.+.|++++.||.|+.+.-..+. +++ .....+.+.|||.
T Consensus 84 tdglIwvvDssD~~r~~e~~~~L~~lL~eer--laG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~ 161 (185)
T KOG0073|consen 84 TDGLIWVVDSSDRMRMQECKQELTELLVEER--LAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAV 161 (185)
T ss_pred cCeEEEEEECchHHHHHHHHHHHHHHHhhhh--hcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEecc
Confidence 9999999999987666654 44555544322 34689999999999985543322 333 3344678999999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 008468 469 TGQGIQDLETAIMKIVG 485 (564)
Q Consensus 469 tg~GI~eL~~~L~~~l~ 485 (564)
+|+++.+-++++...+.
T Consensus 162 tge~l~~gidWL~~~l~ 178 (185)
T KOG0073|consen 162 TGEDLLEGIDWLCDDLM 178 (185)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 99999999988887654
No 192
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.64 E-value=4.6e-15 Score=143.81 Aligned_cols=166 Identities=19% Similarity=0.161 Sum_probs=113.6
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceecc-ccCeeEEEEEEEEEECCeeeEEEeCCCCCCchh---HHHHhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTE-IAGTTRDVIEASVTVCGVPVTLLDTAGIRETDD---IVEKIGVERSEAV 394 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~-~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~---~ie~~~i~~~~~~ 394 (564)
++|+++|.+|||||||+|+|++.+...+.. .+++|++.......+++..+.++||||+.+... .+...........
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 479999999999999999999987643332 467888888888888999999999999987532 2222222222333
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---------hhhccc-CCcEEE
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---------NKVGNS-FNDHVF 464 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---------~~l~~~-~~~~i~ 464 (564)
...+|++++|+|+.+ .+..+...++.+...+.. ....++++|+||+|.......+. ..+.+. ...++.
T Consensus 81 ~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~-~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEEEEQAVETLQELFGE-KVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhCh-HhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 578899999999987 777777777777654321 12357899999999765432221 111111 122333
Q ss_pred Ee-----ccCCCCHHHHHHHHHHHhhc
Q 008468 465 TC-----AVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 465 iS-----Aktg~GI~eL~~~L~~~l~~ 486 (564)
.+ +..+.++++|++.|.+.+..
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 33 45677888888888887764
No 193
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.64 E-value=1.6e-15 Score=154.27 Aligned_cols=151 Identities=22% Similarity=0.269 Sum_probs=104.5
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcce-----e------ccc------cCeeEEEEEEEEEECCeeeEEEeCCCCCCchhH
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAI-----V------TEI------AGTTRDVIEASVTVCGVPVTLLDTAGIRETDDI 382 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~-----v------s~~------~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ 382 (564)
+|+|+|++|+|||||+|+|+.....+ + .++ .+.|.......+.+++..+.+|||||..++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 48999999999999999998643221 1 111 133344445567788999999999998654322
Q ss_pred HHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhcccC-C
Q 008468 383 VEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGNSF-N 460 (564)
Q Consensus 383 ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~~~-~ 460 (564)
...++..+|++++|+|++.+........|..+.. .++|+++|+||+|+........ +.+.+.+ .
T Consensus 81 --------~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~------~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~ 146 (268)
T cd04170 81 --------TRAALRAADAALVVVSAQSGVEVGTEKLWEFADE------AGIPRIIFINKMDRERADFDKTLAALQEAFGR 146 (268)
T ss_pred --------HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH------cCCCEEEEEECCccCCCCHHHHHHHHHHHhCC
Confidence 3345789999999999998877766666665443 3689999999999986543222 3343332 2
Q ss_pred cE--EEEeccCCCCHHHHHHHHHHHh
Q 008468 461 DH--VFTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 461 ~~--i~iSAktg~GI~eL~~~L~~~l 484 (564)
++ +.++..+|.|+..+.+.+....
T Consensus 147 ~~~~~~ip~~~~~~~~~~vd~~~~~~ 172 (268)
T cd04170 147 PVVPLQLPIGEGDDFKGVVDLLTEKA 172 (268)
T ss_pred CeEEEEecccCCCceeEEEEcccCEE
Confidence 33 4556888999888877776544
No 194
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.63 E-value=8.7e-15 Score=151.98 Aligned_cols=163 Identities=28% Similarity=0.289 Sum_probs=108.1
Q ss_pred EEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEE------------------------CCeeeEEEeCCCC
Q 008468 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTV------------------------CGVPVTLLDTAGI 376 (564)
Q Consensus 321 I~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~------------------------~g~~i~LiDTpG~ 376 (564)
|+|+|.||||||||+|+|++... .++++|++|++...+...+ .+.++.+|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 58999999999999999999874 6899999998877654443 2357899999999
Q ss_pred CCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCC------------C-hhHHHHHHH----------------HHh---
Q 008468 377 RETDDIVEKIGVERSEAVALGADVIIMTVSAVDGW------------T-SEDSELLNR----------------IQS--- 424 (564)
Q Consensus 377 ~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~------------s-~~~~~~l~~----------------l~~--- 424 (564)
.........++ .+....+++||++++|+|++... . ..+.+.+.. +.+
T Consensus 80 v~ga~~~~glg-~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~ 158 (318)
T cd01899 80 VPGAHEGKGLG-NKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKAD 158 (318)
T ss_pred CCCccchhhHH-HHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 64332222221 23345689999999999997410 0 111111100 000
Q ss_pred -----------------------------ccc-c------------------CCCCCCEEEEEecCCCCCCCcchhhhh-
Q 008468 425 -----------------------------NKK-S------------------TESSTPMILVINKIDCAPSASNEWNKV- 455 (564)
Q Consensus 425 -----------------------------~~~-~------------------~~~~~PvIvV~NK~DL~~~~~~~~~~l- 455 (564)
... . ....+|+|+|+||+|+....... +.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~-~~l~ 237 (318)
T cd01899 159 AEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNI-SKLR 237 (318)
T ss_pred cCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHH-HHHH
Confidence 000 0 02357999999999985433221 212
Q ss_pred -cccCCcEEEEeccCCCCHHHHHH-HHHHHhhc
Q 008468 456 -GNSFNDHVFTCAVTGQGIQDLET-AIMKIVGL 486 (564)
Q Consensus 456 -~~~~~~~i~iSAktg~GI~eL~~-~L~~~l~~ 486 (564)
...+..++++||+.+.|+++|.+ .+.+.+..
T Consensus 238 ~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 238 LKYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred hhCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 12345799999999999999998 59888754
No 195
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.63 E-value=2.2e-15 Score=135.22 Aligned_cols=149 Identities=26% Similarity=0.241 Sum_probs=102.0
Q ss_pred EEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEE--CCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcE
Q 008468 323 IVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTV--CGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADV 400 (564)
Q Consensus 323 IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~--~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~ 400 (564)
|+|++|+|||||+|++.+.... ......|..+........ .+..+.+|||||........ ...+..+|+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~~~~~~~ 71 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLR--------RLYYRGADG 71 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC-CcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHH--------HHHhcCCCE
Confidence 5899999999999999997742 223333333444444443 25678999999986554332 345789999
Q ss_pred EEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhh----h-hcccCCcEEEEeccCCCCHHH
Q 008468 401 IIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWN----K-VGNSFNDHVFTCAVTGQGIQD 475 (564)
Q Consensus 401 vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~----~-l~~~~~~~i~iSAktg~GI~e 475 (564)
+++|+|++++.+..+...+..... ......+.|+++|+||+|+......... . ......+++++|++++.|+++
T Consensus 72 ~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 150 (157)
T cd00882 72 IILVYDVTDRESFENVKEWLLLIL-INKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEE 150 (157)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHH-HhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHH
Confidence 999999998766665544411111 1123457899999999999765443321 1 112346799999999999999
Q ss_pred HHHHHH
Q 008468 476 LETAIM 481 (564)
Q Consensus 476 L~~~L~ 481 (564)
++++|.
T Consensus 151 ~~~~l~ 156 (157)
T cd00882 151 LFEELA 156 (157)
T ss_pred HHHHHh
Confidence 999875
No 196
>PRK09866 hypothetical protein; Provisional
Probab=99.63 E-value=4e-14 Score=154.86 Aligned_cols=110 Identities=17% Similarity=0.174 Sum_probs=77.0
Q ss_pred eeeEEEeCCCCCCchhH-HHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCC
Q 008468 366 VPVTLLDTAGIRETDDI-VEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDC 444 (564)
Q Consensus 366 ~~i~LiDTpG~~~~~~~-ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL 444 (564)
.+++|+||||+...... ..... ...+..+|+|+||+|+....+..+..+.+.+... ....|+++|+||+|+
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M----~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~----~K~~PVILVVNKIDl 301 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKML----NQQLARASAVLAVLDYTQLKSISDEEVREAILAV----GQSVPLYVLVNKFDQ 301 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHH----HHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc----CCCCCEEEEEEcccC
Confidence 45789999999764322 22221 1258999999999999987777777766666543 113599999999998
Q ss_pred CCCCcc--hh-hh-----hcc---cCCcEEEEeccCCCCHHHHHHHHHHH
Q 008468 445 APSASN--EW-NK-----VGN---SFNDHVFTCAVTGQGIQDLETAIMKI 483 (564)
Q Consensus 445 ~~~~~~--~~-~~-----l~~---~~~~~i~iSAktg~GI~eL~~~L~~~ 483 (564)
.+.... +. .. +.. .+..+|+|||++|.|+++|++.|.+.
T Consensus 302 ~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 302 QDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred CCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 643221 11 11 111 24579999999999999999998774
No 197
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.63 E-value=4.9e-15 Score=144.58 Aligned_cols=142 Identities=17% Similarity=0.174 Sum_probs=95.9
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceecccc-CeeEEEEEEEEEEC-------CeeeEEEeCCCCCCchhHHHHhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIA-GTTRDVIEASVTVC-------GVPVTLLDTAGIRETDDIVEKIGVER 390 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~-gtT~d~~~~~~~~~-------g~~i~LiDTpG~~~~~~~ie~~~i~~ 390 (564)
+||+++|.+|||||||++++++..+. ..+. .+..+.....+.++ .+.+.||||+|...+....
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~--~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~------- 71 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVL--GRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTR------- 71 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC--CCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHH-------
Confidence 58999999999999999999998753 2333 22333444444542 2457899999997765442
Q ss_pred hhhhhhcCcEEEEEecCCCCCChhHHHHHHH-HHhcc----------------ccCCCCCCEEEEEecCCCCCCCcchh-
Q 008468 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNR-IQSNK----------------KSTESSTPMILVINKIDCAPSASNEW- 452 (564)
Q Consensus 391 ~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~----------------~~~~~~~PvIvV~NK~DL~~~~~~~~- 452 (564)
..+++++|++|+|||++++.+++....|.. +.... .....+.|+|+|+||+|+.+......
T Consensus 72 -~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~ 150 (202)
T cd04102 72 -AVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGN 150 (202)
T ss_pred -HHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchH
Confidence 345899999999999999988888765543 32211 01124689999999999976543222
Q ss_pred ------hhhcc-cCCcEEEEeccCC
Q 008468 453 ------NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 453 ------~~l~~-~~~~~i~iSAktg 470 (564)
..+++ ...+.+.++|++.
T Consensus 151 ~~~~~~~~ia~~~~~~~i~~~c~~~ 175 (202)
T cd04102 151 LVLTARGFVAEQGNAEEINLNCTNG 175 (202)
T ss_pred HHhhHhhhHHHhcCCceEEEecCCc
Confidence 11222 2356777777754
No 198
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=7e-15 Score=145.68 Aligned_cols=165 Identities=18% Similarity=0.215 Sum_probs=125.9
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
+.+++|.|+|.+|+|||||+|+|+..+...++..+.+++........+++..++||||||+++..+. +.......+.++
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~-D~~~r~~~~d~l 115 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDK-DAEHRQLYRDYL 115 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhh-hHHHHHHHHHHh
Confidence 4568999999999999999999998877778877766666666666778889999999999875332 112223345678
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcch----------h-----------hh
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE----------W-----------NK 454 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~----------~-----------~~ 454 (564)
.+.|++++++|+.++.-..+...++.+... ..+.++++++|.+|....-... . .+
T Consensus 116 ~~~DLvL~l~~~~draL~~d~~f~~dVi~~----~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 116 PKLDLVLWLIKADDRALGTDEDFLRDVIIL----GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred hhccEEEEeccCCCccccCCHHHHHHHHHh----ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999998777777788876543 2358999999999986542100 0 11
Q ss_pred hcccCCcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 455 VGNSFNDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 455 l~~~~~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
+.+...+++.+|...+.|+++|..++.+.+.
T Consensus 192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 192 LFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 1223357888999999999999999999885
No 199
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.62 E-value=6e-15 Score=164.37 Aligned_cols=149 Identities=24% Similarity=0.325 Sum_probs=102.3
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceecccc-CeeEEEEEEEEEEC------------------CeeeEEEeCCCCCCc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIA-GTTRDVIEASVTVC------------------GVPVTLLDTAGIRET 379 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~-gtT~d~~~~~~~~~------------------g~~i~LiDTpG~~~~ 379 (564)
.-|+++|++|+|||||+|+|.+..+. ...+ ++|++.-...+..+ ...+.+|||||+..+
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~--~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVA--KREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccc--cccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 46999999999999999999998643 3333 35553222222111 124889999998766
Q ss_pred hhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcc---------
Q 008468 380 DDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN--------- 450 (564)
Q Consensus 380 ~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~--------- 450 (564)
..... .++..+|++++|+|++++...++.+.+..+.. .+.|+++|+||+|+.+....
T Consensus 83 ~~l~~--------~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~------~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~ 148 (590)
T TIGR00491 83 TNLRK--------RGGALADLAILIVDINEGFKPQTQEALNILRM------YKTPFVVAANKIDRIPGWRSHEGRPFMES 148 (590)
T ss_pred HHHHH--------HHHhhCCEEEEEEECCcCCCHhHHHHHHHHHH------cCCCEEEEEECCCccchhhhccCchHHHH
Confidence 54322 34689999999999998777777666655433 26899999999999642100
Q ss_pred -----hh-------------hhhcc---------------cCCcEEEEeccCCCCHHHHHHHHHHH
Q 008468 451 -----EW-------------NKVGN---------------SFNDHVFTCAVTGQGIQDLETAIMKI 483 (564)
Q Consensus 451 -----~~-------------~~l~~---------------~~~~~i~iSAktg~GI~eL~~~L~~~ 483 (564)
.. .++.+ ...+++++||++|+|+++|+++|...
T Consensus 149 sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 149 FSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 00 00111 12478999999999999999988643
No 200
>PRK10218 GTP-binding protein; Provisional
Probab=99.62 E-value=9.5e-15 Score=163.30 Aligned_cols=155 Identities=21% Similarity=0.226 Sum_probs=116.8
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceec---------------cccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHH
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVT---------------EIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs---------------~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~i 383 (564)
-+|+|+|+.++|||||+++|+.....+.. ...+.|.......+.+++..+.+|||||+.++...+
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v 85 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEV 85 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHH
Confidence 47999999999999999999974322211 135677777777888899999999999998876543
Q ss_pred HHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-h----hhcc-
Q 008468 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-N----KVGN- 457 (564)
Q Consensus 384 e~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~----~l~~- 457 (564)
+ .+++.+|++++|+|++++...+....|..+... ++|.++|+||+|+........ + .+..
T Consensus 86 ~--------~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~------gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l 151 (607)
T PRK10218 86 E--------RVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY------GLKPIVVINKVDRPGARPDWVVDQVFDLFVNL 151 (607)
T ss_pred H--------HHHHhCCEEEEEEecccCccHHHHHHHHHHHHc------CCCEEEEEECcCCCCCchhHHHHHHHHHHhcc
Confidence 3 458999999999999988777776666665442 689999999999876543222 1 1111
Q ss_pred ------cCCcEEEEeccCCC----------CHHHHHHHHHHHhhcc
Q 008468 458 ------SFNDHVFTCAVTGQ----------GIQDLETAIMKIVGLH 487 (564)
Q Consensus 458 ------~~~~~i~iSAktg~----------GI~eL~~~L~~~l~~~ 487 (564)
...+++++||++|. |+..|++.|.+.+...
T Consensus 152 ~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 152 DATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred CccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 12568999999998 6889999998887543
No 201
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.61 E-value=6.1e-15 Score=165.35 Aligned_cols=154 Identities=20% Similarity=0.251 Sum_probs=109.8
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcce--------ecc------ccCeeEEEEEEEEEEC-----CeeeEEEeCCCCCCc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAI--------VTE------IAGTTRDVIEASVTVC-----GVPVTLLDTAGIRET 379 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~--------vs~------~~gtT~d~~~~~~~~~-----g~~i~LiDTpG~~~~ 379 (564)
-+|+|+|+.++|||||+++|+.....+ +.+ ..|.|.......+.+. ++.++||||||+.++
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 379999999999999999998643211 111 2345554434444442 567899999999887
Q ss_pred hhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhccc
Q 008468 380 DDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGNS 458 (564)
Q Consensus 380 ~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~~ 458 (564)
...+. .++..+|++|+|+|++++...++...|..+.. .+.|+|+|+||+|+........ +++.+.
T Consensus 88 ~~~v~--------~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~------~~lpiIvViNKiDl~~a~~~~v~~ei~~~ 153 (600)
T PRK05433 88 SYEVS--------RSLAACEGALLVVDASQGVEAQTLANVYLALE------NDLEIIPVLNKIDLPAADPERVKQEIEDV 153 (600)
T ss_pred HHHHH--------HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH------CCCCEEEEEECCCCCcccHHHHHHHHHHH
Confidence 65432 34788999999999999887777666655443 2679999999999865432211 233221
Q ss_pred C----CcEEEEeccCCCCHHHHHHHHHHHhhc
Q 008468 459 F----NDHVFTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 459 ~----~~~i~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
+ ..++++||++|.|+++|+++|.+.+..
T Consensus 154 lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 154 IGIDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred hCCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 1 248999999999999999999988754
No 202
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.61 E-value=2.2e-15 Score=152.99 Aligned_cols=166 Identities=21% Similarity=0.229 Sum_probs=119.9
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEE-CCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTV-CGVPVTLLDTAGIRETDDIVEKIGVERSEAVALG 397 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~-~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~ 397 (564)
..|++||-||+|||||+++++..+. .+.+||+||....-..+.+ .+..+++-|.||+.+....-..+|..- ...+.+
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkP-KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~F-LrHIER 237 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKP-KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRF-LRHIER 237 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCC-cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHH-HHHHHh
Confidence 3589999999999999999999875 5799999999988888886 456699999999986543333333332 234788
Q ss_pred CcEEEEEecCCCCCC---hhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcccC--CcEEEEeccC
Q 008468 398 ADVIIMTVSAVDGWT---SEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGNSF--NDHVFTCAVT 469 (564)
Q Consensus 398 aD~vl~ViD~s~~~s---~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~~~--~~~i~iSAkt 469 (564)
+-++++|+|++.... .++.+.+..-+..+...-.++|.++|+||+|+....+... +.+.+.. ...++|||.+
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t 317 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALT 317 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhc
Confidence 899999999986442 4455555544444444456899999999999655433222 2233221 1122299999
Q ss_pred CCCHHHHHHHHHHHhhc
Q 008468 470 GQGIQDLETAIMKIVGL 486 (564)
Q Consensus 470 g~GI~eL~~~L~~~l~~ 486 (564)
+.|+++|...+.+.+..
T Consensus 318 ~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 318 REGLDELLRALAELLEE 334 (369)
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 99999999999988754
No 203
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.61 E-value=3.6e-16 Score=141.59 Aligned_cols=155 Identities=16% Similarity=0.161 Sum_probs=112.9
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+++|..=||||||+-++..+.+.- .......-.+....+.+.+. .+.||||+|++.+...- -.|+
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~-kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALG--------PIYY 83 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNC-KHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALG--------PIYY 83 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcch-hhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccC--------ceEE
Confidence 4899999999999999999999887631 11111111233344455553 46789999998775442 2468
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
+.++.+++|||+++..+++..+.|-. +.. ..+..+.+++|+||+||........ +.+++ ....++++||+.+
T Consensus 84 RgSnGalLVyDITDrdSFqKVKnWV~Elr~---mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N 160 (218)
T KOG0088|consen 84 RGSNGALLVYDITDRDSFQKVKNWVLELRT---MLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDN 160 (218)
T ss_pred eCCCceEEEEeccchHHHHHHHHHHHHHHH---HhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccc
Confidence 99999999999999999887765543 333 3355678999999999987765543 33443 3357899999999
Q ss_pred CCHHHHHHHHHHHh
Q 008468 471 QGIQDLETAIMKIV 484 (564)
Q Consensus 471 ~GI~eL~~~L~~~l 484 (564)
.||.++|+.+.+.+
T Consensus 161 ~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 161 VGISELFESLTAKM 174 (218)
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999988765
No 204
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.61 E-value=8.4e-15 Score=163.80 Aligned_cols=154 Identities=24% Similarity=0.271 Sum_probs=115.6
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcce-----e----------ccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHH
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAI-----V----------TEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVE 384 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~-----v----------s~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie 384 (564)
+|+|+|+.++|||||+++|+.....+ + ....|.|.......+.+++..++||||||+.++...+
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev- 81 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV- 81 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH-
Confidence 69999999999999999998643211 1 1124677777777888999999999999997765443
Q ss_pred HhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-h----hhc---
Q 008468 385 KIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-N----KVG--- 456 (564)
Q Consensus 385 ~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~----~l~--- 456 (564)
..++..+|++++|+|++++...+....|..+... ++|+|+|+||+|+........ + .+.
T Consensus 82 -------~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~------~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g 148 (594)
T TIGR01394 82 -------ERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL------GLKPIVVINKIDRPSARPDEVVDEVFDLFAELG 148 (594)
T ss_pred -------HHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC------CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhc
Confidence 3457899999999999988777776777665543 689999999999975443221 1 111
Q ss_pred ---c-cCCcEEEEeccCCC----------CHHHHHHHHHHHhhcc
Q 008468 457 ---N-SFNDHVFTCAVTGQ----------GIQDLETAIMKIVGLH 487 (564)
Q Consensus 457 ---~-~~~~~i~iSAktg~----------GI~eL~~~L~~~l~~~ 487 (564)
+ ...+++++||++|. |++.|++.|.+.+...
T Consensus 149 ~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 149 ADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred cccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 1 12478999999995 8999999999987543
No 205
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.60 E-value=7.7e-15 Score=164.83 Aligned_cols=152 Identities=23% Similarity=0.242 Sum_probs=109.8
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcc--eeccccCeeEEEEEEEEEE-CCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERA--IVTEIAGTTRDVIEASVTV-CGVPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~--~vs~~~gtT~d~~~~~~~~-~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
-|+++|++++|||||+++|++.+.. ......|+|.+.....+.. ++..+.+|||||+.++... ....+.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~--------m~~g~~ 73 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSN--------MLAGVG 73 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHH--------HHHHhh
Confidence 5899999999999999999975321 2233468888876655544 5677899999998554211 234478
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCC-EEEEEecCCCCCCCcchh--hhhc----c---cCCcEEEEe
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTP-MILVINKIDCAPSASNEW--NKVG----N---SFNDHVFTC 466 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~P-vIvV~NK~DL~~~~~~~~--~~l~----~---~~~~~i~iS 466 (564)
.+|++++|+|++++...++.+.+..+... +.| +|+|+||+|+.+...... +++. . ...+++++|
T Consensus 74 ~~D~~lLVVda~eg~~~qT~ehl~il~~l------gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VS 147 (614)
T PRK10512 74 GIDHALLVVACDDGVMAQTREHLAILQLT------GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTA 147 (614)
T ss_pred cCCEEEEEEECCCCCcHHHHHHHHHHHHc------CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 89999999999998877777666544332 345 579999999975432221 1221 1 125799999
Q ss_pred ccCCCCHHHHHHHHHHHhh
Q 008468 467 AVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 467 Aktg~GI~eL~~~L~~~l~ 485 (564)
|++|.|+++|++.|.+...
T Consensus 148 A~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 148 ATEGRGIDALREHLLQLPE 166 (614)
T ss_pred CCCCCCCHHHHHHHHHhhc
Confidence 9999999999999987654
No 206
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.60 E-value=1.5e-14 Score=144.55 Aligned_cols=114 Identities=29% Similarity=0.297 Sum_probs=86.6
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCccee-----------c------cccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhH
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIV-----------T------EIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDI 382 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~v-----------s------~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ 382 (564)
+|+++|++|+|||||+++|+.....+. . ...+.|.......+.+++.++.+|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 489999999999999999987533211 1 12344555666777889999999999999876543
Q ss_pred HHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCC
Q 008468 383 VEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447 (564)
Q Consensus 383 ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~ 447 (564)
+ ..+++.+|++++|+|++++...+....|..+.. .++|+++|+||+|+...
T Consensus 81 ~--------~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~------~~~P~iivvNK~D~~~a 131 (237)
T cd04168 81 V--------ERSLSVLDGAILVISAVEGVQAQTRILWRLLRK------LNIPTIIFVNKIDRAGA 131 (237)
T ss_pred H--------HHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH------cCCCEEEEEECccccCC
Confidence 2 345789999999999999877666666665543 26899999999998753
No 207
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.60 E-value=1.1e-14 Score=144.37 Aligned_cols=149 Identities=23% Similarity=0.242 Sum_probs=101.0
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceecc-------------ccCeeE------------------------EEEEEEEE
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTE-------------IAGTTR------------------------DVIEASVT 362 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~-------------~~gtT~------------------------d~~~~~~~ 362 (564)
||+++|+.++|||||+++|....+..-.. ..|.|. +.....+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999998643311000 011111 00012344
Q ss_pred ECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh--hcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEe
Q 008468 363 VCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA--LGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVIN 440 (564)
Q Consensus 363 ~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l--~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~N 440 (564)
.++..+.++||||+.++.... ...+ ..+|++++|+|+..+....+.+.+..+... ++|+++|+|
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~--------~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~------~ip~ivvvN 146 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTT--------LFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALAL------NIPVFVVVT 146 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHH--------HHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHc------CCCEEEEEE
Confidence 567789999999986553221 1123 368999999999998888887777776543 689999999
Q ss_pred cCCCCCCCcchh--hh----hc--------------------------ccCCcEEEEeccCCCCHHHHHHHHHH
Q 008468 441 KIDCAPSASNEW--NK----VG--------------------------NSFNDHVFTCAVTGQGIQDLETAIMK 482 (564)
Q Consensus 441 K~DL~~~~~~~~--~~----l~--------------------------~~~~~~i~iSAktg~GI~eL~~~L~~ 482 (564)
|+|+.+...... ++ +. ....++|.+||.+|+|+++|.+.|..
T Consensus 147 K~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 147 KIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred CccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 999875433221 11 11 11247899999999999999988754
No 208
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.58 E-value=1.6e-14 Score=165.32 Aligned_cols=138 Identities=18% Similarity=0.146 Sum_probs=103.3
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcce-----ec------------cccCeeEEEEEEEEEECCeeeEEEeCCCCCCchh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAI-----VT------------EIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDD 381 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~-----vs------------~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~ 381 (564)
-+|+|+|++|+|||||+|+|+.....+ +. ...|+|.+.....+.+++..+++|||||+.++..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~ 90 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTV 90 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhH
Confidence 479999999999999999997533221 11 1467888888899999999999999999977543
Q ss_pred HHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhccc--
Q 008468 382 IVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGNS-- 458 (564)
Q Consensus 382 ~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~~-- 458 (564)
. ...++..+|++++|+|+.++...++...|..+... ++|+++|+||+|+........ +.+...
T Consensus 91 ~--------~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~------~~p~ivviNK~D~~~~~~~~~~~~i~~~l~ 156 (689)
T TIGR00484 91 E--------VERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY------EVPRIAFVNKMDKTGANFLRVVNQIKQRLG 156 (689)
T ss_pred H--------HHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc------CCCEEEEEECCCCCCCCHHHHHHHHHHHhC
Confidence 2 23557889999999999998887777777765432 689999999999986542221 333221
Q ss_pred ---CCcEEEEeccCC
Q 008468 459 ---FNDHVFTCAVTG 470 (564)
Q Consensus 459 ---~~~~i~iSAktg 470 (564)
+...+++|+..+
T Consensus 157 ~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 157 ANAVPIQLPIGAEDN 171 (689)
T ss_pred CCceeEEeccccCCC
Confidence 133688998776
No 209
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.58 E-value=6.5e-15 Score=145.44 Aligned_cols=142 Identities=20% Similarity=0.171 Sum_probs=96.8
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcc------------------------------eeccccCeeEEEEEEEEEECCeeeE
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERA------------------------------IVTEIAGTTRDVIEASVTVCGVPVT 369 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~------------------------------~vs~~~gtT~d~~~~~~~~~g~~i~ 369 (564)
+|+++|++++|||||+.+|+..... ......|+|++.....+.+++..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4899999999999999999643111 0112467899999999999999999
Q ss_pred EEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCC-------CChhHHHHHHHHHhccccCCCCCCEEEEEecC
Q 008468 370 LLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDG-------WTSEDSELLNRIQSNKKSTESSTPMILVINKI 442 (564)
Q Consensus 370 LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~-------~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~ 442 (564)
+|||||+.++... ....+..+|++++|+|++++ ...+..+.+...... ...|+|+|+||+
T Consensus 81 liDtpG~~~~~~~--------~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~iiivvNK~ 147 (219)
T cd01883 81 ILDAPGHRDFVPN--------MITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL-----GVKQLIVAVNKM 147 (219)
T ss_pred EEECCChHHHHHH--------HHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc-----CCCeEEEEEEcc
Confidence 9999998654321 22346789999999999884 222333333322211 135899999999
Q ss_pred CCCCCC--cc--hh--hhh----ccc-----CCcEEEEeccCCCCHH
Q 008468 443 DCAPSA--SN--EW--NKV----GNS-----FNDHVFTCAVTGQGIQ 474 (564)
Q Consensus 443 DL~~~~--~~--~~--~~l----~~~-----~~~~i~iSAktg~GI~ 474 (564)
|+.... .. .. +++ ... ..+++++||++|.|++
T Consensus 148 Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 148 DDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 997421 11 11 111 111 2469999999999987
No 210
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.58 E-value=3.8e-15 Score=159.58 Aligned_cols=207 Identities=22% Similarity=0.173 Sum_probs=144.2
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEE-EEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRD-VIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d-~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
+..+||+++|+.|||||||+-+|+.+++ +..+|..-.. .+...++.+..+..++||..-.+....+ ...
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef--~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l--------~~E 76 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEF--VDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCL--------RKE 76 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhc--cccccccCCccccCCccCcCcCceEEEecccccchhHHH--------HHH
Confidence 4568999999999999999999999985 3444432211 1223445567789999998654443332 233
Q ss_pred hhcCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcc--hh--hhhcccC---CcEEEEe
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASN--EW--NKVGNSF---NDHVFTC 466 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~--~~--~~l~~~~---~~~i~iS 466 (564)
+++||++++|++++++.+.+... .|--+.........+.|+|+|+||+|....... +. ..+...+ ...|+||
T Consensus 77 irkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecS 156 (625)
T KOG1707|consen 77 IRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECS 156 (625)
T ss_pred HhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhh
Confidence 88999999999998876666542 333333332222378999999999999766544 11 2223333 3579999
Q ss_pred ccCCCCHHHHHHHHHHHhhccCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 008468 467 AVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAAL 538 (564)
Q Consensus 467 Aktg~GI~eL~~~L~~~l~~~~~~~~~~~~~~~~r~~~~l~~~~~~L~~~~~~l~~~l~~el~~~eLr~a~~ 538 (564)
|++-.++.++|....+.+-.+.. -++++..+++-.+|..+|.|++...+.+.+..+...||+.-..
T Consensus 157 A~~~~n~~e~fYyaqKaVihPt~------PLyda~~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~ 222 (625)
T KOG1707|consen 157 ALTLANVSELFYYAQKAVIHPTS------PLYDAEEQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQK 222 (625)
T ss_pred hhhhhhhHhhhhhhhheeeccCc------cccccccccccHHHHHHHHHHHhhhccccccccchhhhhHHHH
Confidence 99999999999999888754332 2455555666778899999999988888877777666665433
No 211
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.58 E-value=2.7e-14 Score=128.18 Aligned_cols=157 Identities=19% Similarity=0.193 Sum_probs=119.5
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
...+.+.++|-.|+|||||+|.++..++ ..+-+.|+.+..+.++-+...+.+||.+|+..+..++|. |.
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~---~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWer--------yc 86 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQY---LEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWER--------YC 86 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccc---hhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHH--------Hh
Confidence 3458899999999999999999887654 344455677777777878899999999999999888774 48
Q ss_pred hcCcEEEEEecCCCCCChh-HHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhh-----cccCCcEEEEec
Q 008468 396 LGADVIIMTVSAVDGWTSE-DSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKV-----GNSFNDHVFTCA 467 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~-~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l-----~~~~~~~i~iSA 467 (564)
+.+++++||+|++++.... ....+..++.. ....++|+++.+||.|+.+.-.... +++ .+.-...|.+||
T Consensus 87 R~v~aivY~VDaad~~k~~~sr~EL~~LL~k--~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siSc 164 (186)
T KOG0075|consen 87 RGVSAIVYVVDAADPDKLEASRSELHDLLDK--PSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISC 164 (186)
T ss_pred hcCcEEEEEeecCCcccchhhHHHHHHHhcc--hhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEE
Confidence 9999999999999865433 22334444432 2235789999999999987755432 222 222345799999
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 008468 468 VTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 468 ktg~GI~eL~~~L~~~l~ 485 (564)
++..|++.+.++|.+...
T Consensus 165 ke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 165 KEKVNIDITLDWLIEHSK 182 (186)
T ss_pred cCCccHHHHHHHHHHHhh
Confidence 999999999999998753
No 212
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.57 E-value=2.7e-14 Score=143.48 Aligned_cols=188 Identities=24% Similarity=0.214 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh--hhhhhcCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEE-CC
Q 008468 289 NLVMDKIHAMSQDVENALETAN--YDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTV-CG 365 (564)
Q Consensus 289 ~~l~~~l~~l~~~l~~ll~~~~--~~~~~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~-~g 365 (564)
+.++.+...++++++.+.+... .++....-..|++||.+|+|||||+++|++... ...+.-+.|.|.......+ .|
T Consensus 147 rllr~kea~lrKeL~~vrrkr~~r~gr~~~s~pviavVGYTNaGKsTLikaLT~Aal-~p~drLFATLDpT~h~a~Lpsg 225 (410)
T KOG0410|consen 147 RLLRIKEAQLRKELQRVRRKRQRRVGREGESSPVIAVVGYTNAGKSTLIKALTKAAL-YPNDRLFATLDPTLHSAHLPSG 225 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccCCCceEEEEeecCccHHHHHHHHHhhhc-CccchhheeccchhhhccCCCC
Confidence 4566677777887777765542 122233446799999999999999999996543 3456667777777666666 56
Q ss_pred eeeEEEeCCCCCC--chhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccC--CCCCCEEEEEec
Q 008468 366 VPVTLLDTAGIRE--TDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKST--ESSTPMILVINK 441 (564)
Q Consensus 366 ~~i~LiDTpG~~~--~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~--~~~~PvIvV~NK 441 (564)
..+.+.||.|+.. +...++.+.. +..-+..+|++++|.|+++|....+.+.....++..+.. .....+|-|-||
T Consensus 226 ~~vlltDTvGFisdLP~~LvaAF~A--TLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnk 303 (410)
T KOG0410|consen 226 NFVLLTDTVGFISDLPIQLVAAFQA--TLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNK 303 (410)
T ss_pred cEEEEeechhhhhhCcHHHHHHHHH--HHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccc
Confidence 7789999999873 4456666533 344478999999999999998777665444444432211 111236788999
Q ss_pred CCCCCCCcchhhhhcccCCcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 442 IDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 442 ~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
+|..+.....+ -...+.+||++|+|++++.+.+-..+.
T Consensus 304 iD~e~~~~e~E------~n~~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 304 IDYEEDEVEEE------KNLDVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred cccccccCccc------cCCccccccccCccHHHHHHHHHHHhh
Confidence 99865543321 112688999999999999999887663
No 213
>PRK12736 elongation factor Tu; Reviewed
Probab=99.57 E-value=2.4e-14 Score=153.54 Aligned_cols=156 Identities=19% Similarity=0.157 Sum_probs=111.8
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCc------c---------eeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCch
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSER------A---------IVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD 380 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~------~---------~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~ 380 (564)
+..++|+++|++++|||||+++|++... . ......|+|.+.....+..++..+.++||||+.++-
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence 4458999999999999999999987311 0 011257888888777776678889999999976442
Q ss_pred hHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCC-EEEEEecCCCCCCCcchh---hhhc
Q 008468 381 DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTP-MILVINKIDCAPSASNEW---NKVG 456 (564)
Q Consensus 381 ~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~P-vIvV~NK~DL~~~~~~~~---~~l~ 456 (564)
.. ....+..+|++++|+|+..+...++.+.+..+... ++| +|+|+||+|+.+...... +++.
T Consensus 90 ~~--------~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~------g~~~~IvviNK~D~~~~~~~~~~i~~~i~ 155 (394)
T PRK12736 90 KN--------MITGAAQMDGAILVVAATDGPMPQTREHILLARQV------GVPYLVVFLNKVDLVDDEELLELVEMEVR 155 (394)
T ss_pred HH--------HHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc------CCCEEEEEEEecCCcchHHHHHHHHHHHH
Confidence 21 22336789999999999988777777777665443 577 678999999974332211 1111
Q ss_pred ----c-----cCCcEEEEeccCCC--------CHHHHHHHHHHHhh
Q 008468 457 ----N-----SFNDHVFTCAVTGQ--------GIQDLETAIMKIVG 485 (564)
Q Consensus 457 ----~-----~~~~~i~iSAktg~--------GI~eL~~~L~~~l~ 485 (564)
. ...+++++||++|. ++.+|++.+.+.+.
T Consensus 156 ~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 156 ELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 1 12579999999983 68888888887764
No 214
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.57 E-value=1.7e-15 Score=133.52 Aligned_cols=154 Identities=17% Similarity=0.136 Sum_probs=113.8
Q ss_pred EEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCee--eEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcE
Q 008468 323 IVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVP--VTLLDTAGIRETDDIVEKIGVERSEAVALGADV 400 (564)
Q Consensus 323 IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~--i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~ 400 (564)
++|++++|||+|+-++-...+-.-.-+..+..|+-.+.++.++.+ +.+|||+|++.+... +..++++||.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsv--------t~ayyrda~a 73 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSV--------THAYYRDADA 73 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhh--------hHhhhcccce
Confidence 689999999999988765544322223444567767777777755 578999999877654 3467999999
Q ss_pred EEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCCCCHHHH
Q 008468 401 IIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTGQGIQDL 476 (564)
Q Consensus 401 vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg~GI~eL 476 (564)
+++++|+.+..++++.+.|-.-..++ ....+.+++++||+|+.+...... +.+.+ ...|+.++|||+|-|++-.
T Consensus 74 llllydiankasfdn~~~wlsei~ey--~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~a 151 (192)
T KOG0083|consen 74 LLLLYDIANKASFDNCQAWLSEIHEY--AKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLA 151 (192)
T ss_pred eeeeeecccchhHHHHHHHHHHHHHH--HHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHH
Confidence 99999999999999887664422222 123567899999999976544332 44544 3468999999999999999
Q ss_pred HHHHHHHhhc
Q 008468 477 ETAIMKIVGL 486 (564)
Q Consensus 477 ~~~L~~~l~~ 486 (564)
|-.|.+.+..
T Consensus 152 f~~ia~~l~k 161 (192)
T KOG0083|consen 152 FLAIAEELKK 161 (192)
T ss_pred HHHHHHHHHH
Confidence 9999887753
No 215
>CHL00071 tufA elongation factor Tu
Probab=99.56 E-value=2.5e-14 Score=154.07 Aligned_cols=143 Identities=19% Similarity=0.129 Sum_probs=103.1
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcc---------------eeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCch
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERA---------------IVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD 380 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~---------------~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~ 380 (564)
+..++|+++|++|+|||||+|+|++.... ......|+|++.....+..++..+.|+||||+.++-
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~ 89 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence 34489999999999999999999975211 112237889888777777788899999999976432
Q ss_pred hHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCC-EEEEEecCCCCCCCcchh---hhh-
Q 008468 381 DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTP-MILVINKIDCAPSASNEW---NKV- 455 (564)
Q Consensus 381 ~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~P-vIvV~NK~DL~~~~~~~~---~~l- 455 (564)
.. ....+..+|++++|+|+..+...++.+.+..+... ++| +|+|+||+|+.+...... +++
T Consensus 90 ~~--------~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~------g~~~iIvvvNK~D~~~~~~~~~~~~~~l~ 155 (409)
T CHL00071 90 KN--------MITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV------GVPNIVVFLNKEDQVDDEELLELVELEVR 155 (409)
T ss_pred HH--------HHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc------CCCEEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 21 23447789999999999988877777777665443 578 778999999976432111 111
Q ss_pred ---cc-----cCCcEEEEeccCCCC
Q 008468 456 ---GN-----SFNDHVFTCAVTGQG 472 (564)
Q Consensus 456 ---~~-----~~~~~i~iSAktg~G 472 (564)
.. ...+++++||.+|.+
T Consensus 156 ~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 156 ELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHhCCCCCcceEEEcchhhccc
Confidence 11 125789999999864
No 216
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.56 E-value=3.7e-15 Score=131.85 Aligned_cols=115 Identities=24% Similarity=0.247 Sum_probs=74.2
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcc---eeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERA---IVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~---~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
||+|+|++|||||||+++|++.... ......+.+.......+..+...+.+||++|........ ...+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--------~~~~~ 72 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQH--------QFFLK 72 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTS--------HHHHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccc--------cchhh
Confidence 7999999999999999999998754 122333333333333333333458899999985433221 12378
Q ss_pred cCcEEEEEecCCCCCChhHHHHH-HHHHhccccCCCCCCEEEEEecCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELL-NRIQSNKKSTESSTPMILVINKID 443 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l-~~l~~~~~~~~~~~PvIvV~NK~D 443 (564)
.+|++++|||++++.+.+....+ .++... .....+.|+++|+||.|
T Consensus 73 ~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~-~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 73 KADAVILVYDLSDPESLEYLSQLLKWLKNI-RKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HSCEEEEEEECCGHHHHHHHHHHHHHHHHH-HHHSSCSEEEEEEE-TC
T ss_pred cCcEEEEEEcCCChHHHHHHHHHHHHHHHH-HccCCCCCEEEEEeccC
Confidence 89999999999987776664323 233222 22234699999999998
No 217
>PRK00007 elongation factor G; Reviewed
Probab=99.56 E-value=3.3e-14 Score=162.59 Aligned_cols=146 Identities=16% Similarity=0.146 Sum_probs=108.4
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCc---c--eec------------cccCeeEEEEEEEEEECCeeeEEEeCCCCCCchh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSER---A--IVT------------EIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDD 381 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~---~--~vs------------~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~ 381 (564)
.+|+|+|++|+|||||+|+|+.... . .+. ...++|++.....+.+++..++++||||+.++..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ 90 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTI 90 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHH
Confidence 5899999999999999999974211 1 122 3578899998888999999999999999865432
Q ss_pred HHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhcccC-
Q 008468 382 IVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGNSF- 459 (564)
Q Consensus 382 ~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~~~- 459 (564)
. ....+..+|++++|+|+..+...++...|..+... ++|+|+++||+|+........ +++.+.+
T Consensus 91 e--------v~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~------~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~ 156 (693)
T PRK00007 91 E--------VERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKY------KVPRIAFVNKMDRTGADFYRVVEQIKDRLG 156 (693)
T ss_pred H--------HHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHc------CCCEEEEEECCCCCCCCHHHHHHHHHHHhC
Confidence 2 23457889999999999999888888888876654 679999999999986543222 3333221
Q ss_pred ----CcEEEEeccCC-CCHHHHHH
Q 008468 460 ----NDHVFTCAVTG-QGIQDLET 478 (564)
Q Consensus 460 ----~~~i~iSAktg-~GI~eL~~ 478 (564)
...+++|+.++ .|+-+++.
T Consensus 157 ~~~~~~~ipisa~~~f~g~~d~~~ 180 (693)
T PRK00007 157 ANPVPIQLPIGAEDDFKGVVDLVK 180 (693)
T ss_pred CCeeeEEecCccCCcceEEEEcce
Confidence 34688999887 45555543
No 218
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=3e-14 Score=126.85 Aligned_cols=155 Identities=20% Similarity=0.215 Sum_probs=114.4
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCee-EEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTT-RDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT-~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
-+|-.|+|+-|||||+|+..+..+.+ ..+.|.|. .++-...+++.|. ++.+|||+|++.+... ++.+
T Consensus 11 ifkyiiigdmgvgkscllhqftekkf--madcphtigvefgtriievsgqkiklqiwdtagqerfrav--------trsy 80 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV--------TRSY 80 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHH--hhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHH--------HHHH
Confidence 37899999999999999999998875 45655542 3344445566664 5678999999777544 4567
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
++.+-..++|+|++...+...+..|-. .......++..+++++||.||........ +++.+ +..-++++|||+|
T Consensus 81 yrgaagalmvyditrrstynhlsswl~--dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg 158 (215)
T KOG0097|consen 81 YRGAAGALMVYDITRRSTYNHLSSWLT--DARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTG 158 (215)
T ss_pred hccccceeEEEEehhhhhhhhHHHHHh--hhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEeccccc
Confidence 999999999999999877776655533 22233456777999999999988776654 33443 3356899999999
Q ss_pred CCHHHHHHHHHHHh
Q 008468 471 QGIQDLETAIMKIV 484 (564)
Q Consensus 471 ~GI~eL~~~L~~~l 484 (564)
.++++.|-.-.+.+
T Consensus 159 ~nvedafle~akki 172 (215)
T KOG0097|consen 159 QNVEDAFLETAKKI 172 (215)
T ss_pred CcHHHHHHHHHHHH
Confidence 99999776655554
No 219
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.55 E-value=3.9e-14 Score=129.47 Aligned_cols=135 Identities=24% Similarity=0.321 Sum_probs=91.1
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCC-CchhHHHHhhhhhhhhhhhcC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIR-ETDDIVEKIGVERSEAVALGA 398 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~-~~~~~ie~~~i~~~~~~l~~a 398 (564)
||+++|+.|||||||+++|.+.+.. +.. |... .+.+ .++||||-. +.......+ .....+|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~----~~K-Tq~i-----~~~~---~~IDTPGEyiE~~~~y~aL-----i~ta~da 64 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR----YKK-TQAI-----EYYD---NTIDTPGEYIENPRFYHAL-----IVTAQDA 64 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC----cCc-ccee-----Eecc---cEEECChhheeCHHHHHHH-----HHHHhhC
Confidence 7999999999999999999997732 222 1211 2222 349999965 333332222 2346789
Q ss_pred cEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCC-cchh--hhhcc-cCCcEEEEeccCCCCHH
Q 008468 399 DVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA-SNEW--NKVGN-SFNDHVFTCAVTGQGIQ 474 (564)
Q Consensus 399 D~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~-~~~~--~~l~~-~~~~~i~iSAktg~GI~ 474 (564)
|+|++|.|++++.+......... .++|+|-|+||+|+.... ..+. +.+.. ...++|++|+.+|+|++
T Consensus 65 d~V~ll~dat~~~~~~pP~fa~~---------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~ 135 (143)
T PF10662_consen 65 DVVLLLQDATEPRSVFPPGFASM---------FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIE 135 (143)
T ss_pred CEEEEEecCCCCCccCCchhhcc---------cCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHH
Confidence 99999999998754433322221 257999999999998332 2222 22332 22467999999999999
Q ss_pred HHHHHHH
Q 008468 475 DLETAIM 481 (564)
Q Consensus 475 eL~~~L~ 481 (564)
+|.++|.
T Consensus 136 eL~~~L~ 142 (143)
T PF10662_consen 136 ELKDYLE 142 (143)
T ss_pred HHHHHHh
Confidence 9999875
No 220
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.55 E-value=2.5e-14 Score=154.98 Aligned_cols=147 Identities=21% Similarity=0.214 Sum_probs=100.5
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCccee------------------------------ccccCeeEEEEEEEEEECC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIV------------------------------TEIAGTTRDVIEASVTVCG 365 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~v------------------------------s~~~gtT~d~~~~~~~~~g 365 (564)
+..++|+++|+.++|||||+++|+.....+. ....++|.+.....+..++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 3458999999999999999999986322111 1245889999888889899
Q ss_pred eeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCCh---hHHHHHHHHHhccccCCCCCCEEEEEecC
Q 008468 366 VPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTS---EDSELLNRIQSNKKSTESSTPMILVINKI 442 (564)
Q Consensus 366 ~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~---~~~~~l~~l~~~~~~~~~~~PvIvV~NK~ 442 (564)
..+.||||||+.++... ....+..+|++++|+|++++.+. +..+.+. +.... ...|+|+|+||+
T Consensus 85 ~~i~iiDtpGh~~f~~~--------~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~----~~~~iIVviNK~ 151 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKN--------MITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTL----GINQLIVAINKM 151 (426)
T ss_pred eEEEEEECCCHHHHHHH--------HHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHc----CCCeEEEEEECh
Confidence 99999999997654221 22346789999999999987432 2222221 11111 124799999999
Q ss_pred CCCCCCcchh-------hhhcc------cCCcEEEEeccCCCCHHH
Q 008468 443 DCAPSASNEW-------NKVGN------SFNDHVFTCAVTGQGIQD 475 (564)
Q Consensus 443 DL~~~~~~~~-------~~l~~------~~~~~i~iSAktg~GI~e 475 (564)
|+.+...... .++.+ ...+++++||++|.|+++
T Consensus 152 Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 152 DSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred hccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 9975322110 11211 124689999999999986
No 221
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=5.5e-15 Score=134.07 Aligned_cols=155 Identities=18% Similarity=0.192 Sum_probs=112.5
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEEC---------C--eeeEEEeCCCCCCchhHHHHhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC---------G--VPVTLLDTAGIRETDDIVEKIG 387 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~---------g--~~i~LiDTpG~~~~~~~ie~~~ 387 (564)
+|...+|++||||||++.+.+...+. ..-+..+..|+.++.+.++ + +-+.+|||+|++.+...-
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~-~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT---- 84 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFN-TQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT---- 84 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCccc-ceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH----
Confidence 56778899999999999999887753 1223334456666665552 1 236789999998876653
Q ss_pred hhhhhhhhhcCcEEEEEecCCCCCChhHHHHH-HHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcE
Q 008468 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELL-NRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDH 462 (564)
Q Consensus 388 i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l-~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~ 462 (564)
-.++++|-.++++||.++..++-+..-| .++... ....+..+|+++||+||.+...... .++.+ ...||
T Consensus 85 ----TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~h--AYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPY 158 (219)
T KOG0081|consen 85 ----TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTH--AYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPY 158 (219)
T ss_pred ----HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHh--hccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCe
Confidence 3458999999999999998887776444 334332 2244566899999999998877665 33444 34799
Q ss_pred EEEeccCCCCHHHHHHHHHHHh
Q 008468 463 VFTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 463 i~iSAktg~GI~eL~~~L~~~l 484 (564)
|++||-+|.||++..+.+...+
T Consensus 159 fETSA~tg~Nv~kave~Lldlv 180 (219)
T KOG0081|consen 159 FETSACTGTNVEKAVELLLDLV 180 (219)
T ss_pred eeeccccCcCHHHHHHHHHHHH
Confidence 9999999999999887776654
No 222
>PRK12735 elongation factor Tu; Reviewed
Probab=99.54 E-value=3.9e-14 Score=152.01 Aligned_cols=155 Identities=19% Similarity=0.168 Sum_probs=108.3
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC------Ccc---------eeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCch
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS------ERA---------IVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD 380 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~------~~~---------~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~ 380 (564)
+..++|+++|++|+|||||+++|++. ... ......|+|.+.....+..++..+.|+||||+.++.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 44589999999999999999999862 110 011257888888777777778889999999985432
Q ss_pred hHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEE-EEEecCCCCCCCcchh---hhh-
Q 008468 381 DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMI-LVINKIDCAPSASNEW---NKV- 455 (564)
Q Consensus 381 ~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvI-vV~NK~DL~~~~~~~~---~~l- 455 (564)
. .....+..+|++++|+|+..+...++.+.+..+... ++|.+ +|+||+|+.+...... +++
T Consensus 90 ~--------~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~------gi~~iivvvNK~Dl~~~~~~~~~~~~ei~ 155 (396)
T PRK12735 90 K--------NMITGAAQMDGAILVVSAADGPMPQTREHILLARQV------GVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (396)
T ss_pred H--------HHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHc------CCCeEEEEEEecCCcchHHHHHHHHHHHH
Confidence 1 123446789999999999987766666666554432 57855 6799999975322111 111
Q ss_pred --cc------cCCcEEEEeccCCC----------CHHHHHHHHHHHh
Q 008468 456 --GN------SFNDHVFTCAVTGQ----------GIQDLETAIMKIV 484 (564)
Q Consensus 456 --~~------~~~~~i~iSAktg~----------GI~eL~~~L~~~l 484 (564)
.. ...+++++||++|. ++.+|++.|...+
T Consensus 156 ~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 156 ELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred HHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 11 12568999999984 6778888887754
No 223
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.54 E-value=2.4e-13 Score=136.75 Aligned_cols=135 Identities=24% Similarity=0.249 Sum_probs=98.3
Q ss_pred hhcCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCch--hHHHHhhhhhh
Q 008468 314 LLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD--DIVEKIGVERS 391 (564)
Q Consensus 314 ~~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~--~~ie~~~i~~~ 391 (564)
.....++|+|+|.+|||||||+|+|++.....++.+.++|..........++..+.+|||||+.+.. ...........
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 3456699999999999999999999999877788888888888888888899999999999998662 22222222222
Q ss_pred hhhhh--cCcEEEEEecCCC-CCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCc
Q 008468 392 EAVAL--GADVIIMTVSAVD-GWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449 (564)
Q Consensus 392 ~~~l~--~aD~vl~ViD~s~-~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~ 449 (564)
..++. ..|++++|..++. .....+...++.+...+. .....++++|+||+|......
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG-~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFG-PSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhC-hhhHhCEEEEEeCCccCCCCC
Confidence 23332 6789999976654 345566667776665432 122357999999999876544
No 224
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.54 E-value=2.1e-13 Score=145.80 Aligned_cols=166 Identities=24% Similarity=0.305 Sum_probs=109.7
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEE---------------------C---CeeeEEEeCC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTV---------------------C---GVPVTLLDTA 374 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~---------------------~---g~~i~LiDTp 374 (564)
++|+|+|.||||||||+|+|++... .++++|++|++...+...+ + ..++.+||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~-~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADV-EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc-cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 6899999999999999999999875 5689999999887765442 2 2557899999
Q ss_pred CCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCC------------C-hhHHH-------H---------HHHHHhc
Q 008468 375 GIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGW------------T-SEDSE-------L---------LNRIQSN 425 (564)
Q Consensus 375 G~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~------------s-~~~~~-------~---------l~~l~~~ 425 (564)
|+.......+..+ .+....++++|++++|+|+.... . ..+.+ . +..+...
T Consensus 81 Gl~~ga~~g~glg-~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~ 159 (396)
T PRK09602 81 GLVPGAHEGRGLG-NQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRK 159 (396)
T ss_pred CcCCCccchhhHH-HHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9865332222221 13345589999999999997311 0 11111 1 0001100
Q ss_pred --------------------------------c-cc------------------CCCCCCEEEEEecCCCCCCCcchhhh
Q 008468 426 --------------------------------K-KS------------------TESSTPMILVINKIDCAPSASNEWNK 454 (564)
Q Consensus 426 --------------------------------~-~~------------------~~~~~PvIvV~NK~DL~~~~~~~~~~ 454 (564)
. .. ....+|+|+|+||+|+...... ...
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~-l~~ 238 (396)
T PRK09602 160 AQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEEN-IER 238 (396)
T ss_pred HhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHH-HHH
Confidence 0 00 0135899999999997643221 112
Q ss_pred hcc-cCCcEEEEeccCCCCHHH-HHHHHHHHhhcc
Q 008468 455 VGN-SFNDHVFTCAVTGQGIQD-LETAIMKIVGLH 487 (564)
Q Consensus 455 l~~-~~~~~i~iSAktg~GI~e-L~~~L~~~l~~~ 487 (564)
+.+ .+..++++||+.+.++++ +.+.+.+.+...
T Consensus 239 i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~ 273 (396)
T PRK09602 239 LKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGD 273 (396)
T ss_pred HHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCC
Confidence 211 356789999999999999 888888877543
No 225
>PLN03127 Elongation factor Tu; Provisional
Probab=99.53 E-value=9.1e-14 Score=150.90 Aligned_cols=156 Identities=19% Similarity=0.195 Sum_probs=109.5
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhc------CCccee---------ccccCeeEEEEEEEEEECCeeeEEEeCCCCCCch
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSK------SERAIV---------TEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD 380 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~------~~~~~v---------s~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~ 380 (564)
+..++|+++|+.++|||||+++|.+ ...... ...+|+|++.....+..++..+.++||||+.++-
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~ 138 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYV 138 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchH
Confidence 4458999999999999999999973 221111 1237899998888888888899999999997642
Q ss_pred hHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCC-EEEEEecCCCCCCCcchh---hhhc
Q 008468 381 DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTP-MILVINKIDCAPSASNEW---NKVG 456 (564)
Q Consensus 381 ~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~P-vIvV~NK~DL~~~~~~~~---~~l~ 456 (564)
.. ....+..+|++++|+|+..+...++.+.+..+... ++| +|+|+||+|+.+...... +++.
T Consensus 139 ~~--------~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~------gip~iIvviNKiDlv~~~~~~~~i~~~i~ 204 (447)
T PLN03127 139 KN--------MITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV------GVPSLVVFLNKVDVVDDEELLELVEMELR 204 (447)
T ss_pred HH--------HHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc------CCCeEEEEEEeeccCCHHHHHHHHHHHHH
Confidence 22 12235679999999999988777777777665543 578 578999999975322111 1111
Q ss_pred c---------cCCcEEEEecc---CCCC-------HHHHHHHHHHHhh
Q 008468 457 N---------SFNDHVFTCAV---TGQG-------IQDLETAIMKIVG 485 (564)
Q Consensus 457 ~---------~~~~~i~iSAk---tg~G-------I~eL~~~L~~~l~ 485 (564)
+ ...+++++||. +|.| +.+|++.+.+.+.
T Consensus 205 ~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 205 ELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 1 12467888876 4555 6778888777653
No 226
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.53 E-value=3.6e-14 Score=144.30 Aligned_cols=116 Identities=22% Similarity=0.300 Sum_probs=83.6
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCccee---------------ccc------cCeeEEEEEEEEEECCeeeEEEeCCCCCC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIV---------------TEI------AGTTRDVIEASVTVCGVPVTLLDTAGIRE 378 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~v---------------s~~------~gtT~d~~~~~~~~~g~~i~LiDTpG~~~ 378 (564)
+|+|+|++|+|||||+++|+.....+. .++ .+.+.......+.+++..+.+|||||+.+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 699999999999999999986432211 111 12333445557788999999999999876
Q ss_pred chhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCc
Q 008468 379 TDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449 (564)
Q Consensus 379 ~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~ 449 (564)
+... ....++.+|++++|+|++++........|+.... .++|+++++||+|+.....
T Consensus 84 f~~~--------~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~------~~~P~iivvNK~D~~~a~~ 140 (267)
T cd04169 84 FSED--------TYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL------RGIPIITFINKLDREGRDP 140 (267)
T ss_pred HHHH--------HHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHh------cCCCEEEEEECCccCCCCH
Confidence 5432 2345788999999999998766555555544322 3689999999999876543
No 227
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.53 E-value=3.1e-14 Score=161.51 Aligned_cols=147 Identities=19% Similarity=0.176 Sum_probs=101.1
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceecc----------cc----------------------CeeEEEEEEEEEE
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTE----------IA----------------------GTTRDVIEASVTV 363 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~----------~~----------------------gtT~d~~~~~~~~ 363 (564)
+..++|+|+|++|+|||||+|+|+.....+++. .. |+|++.....+.+
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 344899999999999999999999876554421 23 3455555566777
Q ss_pred CCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCC
Q 008468 364 CGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443 (564)
Q Consensus 364 ~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~D 443 (564)
++.++.|+||||+.++... ....+..+|++++|+|+..+...++.+.+..+... ...++|+|+||+|
T Consensus 102 ~~~~~~liDtPG~~~f~~~--------~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-----~~~~iivvvNK~D 168 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRN--------MVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-----GIRHVVLAVNKMD 168 (632)
T ss_pred CCceEEEEECCChHHHHHH--------HHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-----CCCeEEEEEEecc
Confidence 8889999999997643221 12247889999999999888766655544443322 1257889999999
Q ss_pred CCCCCcchh----hhhc---c--cC--CcEEEEeccCCCCHHH
Q 008468 444 CAPSASNEW----NKVG---N--SF--NDHVFTCAVTGQGIQD 475 (564)
Q Consensus 444 L~~~~~~~~----~~l~---~--~~--~~~i~iSAktg~GI~e 475 (564)
+........ .++. . .+ .+++++||++|.|+++
T Consensus 169 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 169 LVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 975222111 2221 1 12 3589999999999884
No 228
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.53 E-value=5.5e-14 Score=151.33 Aligned_cols=156 Identities=18% Similarity=0.138 Sum_probs=100.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcc--eeccccCeeEEEEEEEE--------------------EE------CCeee
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERA--IVTEIAGTTRDVIEASV--------------------TV------CGVPV 368 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~--~vs~~~gtT~d~~~~~~--------------------~~------~g~~i 368 (564)
..++|+++|++++|||||+++|.+.... ......+.|.+.....+ .. .+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 3489999999999999999999764210 01112233333221110 00 14578
Q ss_pred EEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCC-ChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCC
Q 008468 369 TLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGW-TSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447 (564)
Q Consensus 369 ~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~-s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~ 447 (564)
.+|||||+.++... ....+..+|++++|+|++++. ..+..+.+..+... ...|+++|+||+|+.+.
T Consensus 83 ~liDtPGh~~f~~~--------~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-----gi~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 83 SFVDAPGHETLMAT--------MLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-----GIKNIVIVQNKIDLVSK 149 (406)
T ss_pred EEEECCCHHHHHHH--------HHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-----CCCeEEEEEEccccCCH
Confidence 99999998654322 223466789999999999865 44444444433221 12468999999999764
Q ss_pred Ccchh--hhh---ccc----CCcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 448 ASNEW--NKV---GNS----FNDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 448 ~~~~~--~~l---~~~----~~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
..... +++ ... ..+++++||++|.|+++|+++|...+.
T Consensus 150 ~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 150 EKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 32211 121 111 246899999999999999999998654
No 229
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.53 E-value=1.8e-13 Score=134.13 Aligned_cols=155 Identities=22% Similarity=0.197 Sum_probs=106.9
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCe-eEEEEEEEEEEC--CeeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGT-TRDVIEASVTVC--GVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gt-T~d~~~~~~~~~--g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
+||+++|++|||||||+++|.+..+. ..++.| ............ ...+.+|||+|+.++...+. .++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~--------~y~ 75 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFP--EGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRP--------EYY 75 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCc--ccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHH--------HHh
Confidence 89999999999999999999998764 333333 333333333333 46688999999977665533 458
Q ss_pred hcCcEEEEEecCCCCCC-hhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcc------------hhh---hh--cc
Q 008468 396 LGADVIIMTVSAVDGWT-SEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN------------EWN---KV--GN 457 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s-~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~------------~~~---~l--~~ 457 (564)
..++++++|+|.+.... .+..+.|....... .....|+++|+||+|+...... ... .. ..
T Consensus 76 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (219)
T COG1100 76 RGANGILIVYDSTLRESSDELTEEWLEELREL--APDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLP 153 (219)
T ss_pred cCCCEEEEEEecccchhhhHHHHHHHHHHHHh--CCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhh
Confidence 99999999999998433 33344454332221 1136899999999999876421 110 00 01
Q ss_pred --cCCcEEEEecc--CCCCHHHHHHHHHHHhh
Q 008468 458 --SFNDHVFTCAV--TGQGIQDLETAIMKIVG 485 (564)
Q Consensus 458 --~~~~~i~iSAk--tg~GI~eL~~~L~~~l~ 485 (564)
....++++|++ ++.++.+++..+.+.+.
T Consensus 154 ~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 154 EVANPALLETSAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred hhcccceeEeecccCCCcCHHHHHHHHHHHHH
Confidence 12338999999 99999999999988774
No 230
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.53 E-value=1.2e-13 Score=154.44 Aligned_cols=149 Identities=24% Similarity=0.356 Sum_probs=99.4
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceecccc-CeeEEEEEEEEEEC------C------------eeeEEEeCCCCCC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIA-GTTRDVIEASVTVC------G------------VPVTLLDTAGIRE 378 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~-gtT~d~~~~~~~~~------g------------~~i~LiDTpG~~~ 378 (564)
+..|+++|++|+|||||+|+|.+.... ...+ +.|++.-...+..+ + ..+.+|||||+..
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~--~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVA--AKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccc--cCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 357999999999999999999876532 3333 33433211111110 0 1268999999977
Q ss_pred chhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcc--------
Q 008468 379 TDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN-------- 450 (564)
Q Consensus 379 ~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~-------- 450 (564)
+..... ..+..+|++++|+|++++...++.+.+..+.. .+.|+++|+||+|+.+....
T Consensus 84 f~~~~~--------~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~------~~vpiIvviNK~D~~~~~~~~~~~~~~e 149 (586)
T PRK04004 84 FTNLRK--------RGGALADIAILVVDINEGFQPQTIEAINILKR------RKTPFVVAANKIDRIPGWKSTEDAPFLE 149 (586)
T ss_pred HHHHHH--------HhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH------cCCCEEEEEECcCCchhhhhhcCchHHH
Confidence 654432 23678999999999998766666666654433 36899999999998532110
Q ss_pred ------h--h-----------hhhcc---------------cCCcEEEEeccCCCCHHHHHHHHHH
Q 008468 451 ------E--W-----------NKVGN---------------SFNDHVFTCAVTGQGIQDLETAIMK 482 (564)
Q Consensus 451 ------~--~-----------~~l~~---------------~~~~~i~iSAktg~GI~eL~~~L~~ 482 (564)
. . ..+.. ...+++++||++|.|+++|++.+..
T Consensus 150 ~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 150 SIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 0 0 01110 1246899999999999999988764
No 231
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.53 E-value=4.8e-14 Score=154.33 Aligned_cols=149 Identities=17% Similarity=0.150 Sum_probs=102.8
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceecc--------------------------------ccCeeEEEEEEEEEE
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTE--------------------------------IAGTTRDVIEASVTV 363 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~--------------------------------~~gtT~d~~~~~~~~ 363 (564)
+..++|+++|++++|||||+++|+.....+... ..|.|.+.....+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 455999999999999999999998765433221 134566777777778
Q ss_pred CCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCC
Q 008468 364 CGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443 (564)
Q Consensus 364 ~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~D 443 (564)
++..+.|+||||+.++... ....+..+|++++|+|+..+...++.+.+..+... ...|+|+|+||+|
T Consensus 105 ~~~~i~~iDTPGh~~f~~~--------~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l-----g~~~iIvvvNKiD 171 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRN--------MATGASTCDLAILLIDARKGVLDQTRRHSFIATLL-----GIKHLVVAVNKMD 171 (474)
T ss_pred CCcEEEEEECCCcHHHHHH--------HHHHHhhCCEEEEEEECCCCccccchHHHHHHHHh-----CCCceEEEEEeec
Confidence 8899999999997544221 12236889999999999988766555444333222 1247899999999
Q ss_pred CCCCCcchh----hhhc---c-----cCCcEEEEeccCCCCHHHHH
Q 008468 444 CAPSASNEW----NKVG---N-----SFNDHVFTCAVTGQGIQDLE 477 (564)
Q Consensus 444 L~~~~~~~~----~~l~---~-----~~~~~i~iSAktg~GI~eL~ 477 (564)
+........ +++. . ...+++++||++|.|++++.
T Consensus 172 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 172 LVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred cccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 975332111 2221 1 13578999999999998753
No 232
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.53 E-value=1.4e-13 Score=133.67 Aligned_cols=155 Identities=24% Similarity=0.213 Sum_probs=97.8
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceec----cccCeeEEEEEEEEEE-CCeeeEEEeCCCCCCchhHHHHhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVT----EIAGTTRDVIEASVTV-CGVPVTLLDTAGIRETDDIVEKIGVERSE 392 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs----~~~gtT~d~~~~~~~~-~g~~i~LiDTpG~~~~~~~ie~~~i~~~~ 392 (564)
+++|+|+|++|||||||+|+|++....... ....+|..... +.. +...+.+|||||+.+.....+.+ .. .
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~l~l~DtpG~~~~~~~~~~~-l~--~ 75 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTP--YPHPKFPNVTLWDLPGIGSTAFPPDDY-LE--E 75 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCcee--eecCCCCCceEEeCCCCCcccCCHHHH-HH--H
Confidence 378999999999999999999996532111 11112222211 111 23468999999997643332222 11 1
Q ss_pred hhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCc---------chh--hh-------
Q 008468 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS---------NEW--NK------- 454 (564)
Q Consensus 393 ~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~---------~~~--~~------- 454 (564)
..+..+|++++|.| .+.+..+...+..+... +.|+++|+||+|+..... ... ++
T Consensus 76 ~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~------~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 147 (197)
T cd04104 76 MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCM------GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLE 147 (197)
T ss_pred hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHh------CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHH
Confidence 22577899999854 34566666666655442 579999999999853211 111 11
Q ss_pred -hc---ccCCcEEEEecc--CCCCHHHHHHHHHHHhh
Q 008468 455 -VG---NSFNDHVFTCAV--TGQGIQDLETAIMKIVG 485 (564)
Q Consensus 455 -l~---~~~~~~i~iSAk--tg~GI~eL~~~L~~~l~ 485 (564)
+. -..+++|.+|+. .+.|+..|.+.|...+.
T Consensus 148 ~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~ 184 (197)
T cd04104 148 NLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLP 184 (197)
T ss_pred HHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhh
Confidence 11 123578999998 67899999999988764
No 233
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.53 E-value=4.8e-14 Score=151.79 Aligned_cols=144 Identities=18% Similarity=0.181 Sum_probs=101.8
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceec--------------------------------cccCeeEEEEEEEEEECCe
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVT--------------------------------EIAGTTRDVIEASVTVCGV 366 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs--------------------------------~~~gtT~d~~~~~~~~~g~ 366 (564)
++|+++|+.++|||||+++|+.....+.. ...|.|++.....+.+++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 48999999999999999999754432211 1235678888888888899
Q ss_pred eeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCC
Q 008468 367 PVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446 (564)
Q Consensus 367 ~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~ 446 (564)
.+.|+||||+.++.... ...+..+|++++|+|+..+...++.+.+..+... ...++|+|+||+|+..
T Consensus 81 ~~~liDtPGh~~f~~~~--------~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-----~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNM--------ATGASTADLAVLLVDARKGVLEQTRRHSYIASLL-----GIRHVVLAVNKMDLVD 147 (406)
T ss_pred EEEEEeCCCHHHHHHHH--------HHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-----CCCcEEEEEEeccccc
Confidence 99999999986543221 2346789999999999988777766655544332 1236899999999975
Q ss_pred CCcchh----hhh---cc----cCCcEEEEeccCCCCHHH
Q 008468 447 SASNEW----NKV---GN----SFNDHVFTCAVTGQGIQD 475 (564)
Q Consensus 447 ~~~~~~----~~l---~~----~~~~~i~iSAktg~GI~e 475 (564)
...... +++ .. ...+++++||++|.|+++
T Consensus 148 ~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 148 YDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 332111 122 11 124699999999999886
No 234
>PRK12739 elongation factor G; Reviewed
Probab=99.52 E-value=1.2e-13 Score=157.95 Aligned_cols=139 Identities=16% Similarity=0.133 Sum_probs=103.7
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcc-----eec------------cccCeeEEEEEEEEEECCeeeEEEeCCCCCCchh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERA-----IVT------------EIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDD 381 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~-----~vs------------~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~ 381 (564)
.+|+|+|++|+|||||+|+|+..... .+. ...++|.+.....+.+++..++++||||+.++..
T Consensus 9 rni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~~ 88 (691)
T PRK12739 9 RNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFTI 88 (691)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHHH
Confidence 57999999999999999999753211 112 2567888888888999999999999999865432
Q ss_pred HHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhcccC-
Q 008468 382 IVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGNSF- 459 (564)
Q Consensus 382 ~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~~~- 459 (564)
.+..++..+|++++|+|+..+...++...|..+... ++|+|+++||+|+........ +++...+
T Consensus 89 --------e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~------~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~ 154 (691)
T PRK12739 89 --------EVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY------GVPRIVFVNKMDRIGADFFRSVEQIKDRLG 154 (691)
T ss_pred --------HHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc------CCCEEEEEECCCCCCCCHHHHHHHHHHHhC
Confidence 134568899999999999998888877777776543 689999999999986542222 3332221
Q ss_pred ----CcEEEEeccCCC
Q 008468 460 ----NDHVFTCAVTGQ 471 (564)
Q Consensus 460 ----~~~i~iSAktg~ 471 (564)
...+++|+..+.
T Consensus 155 ~~~~~~~iPis~~~~f 170 (691)
T PRK12739 155 ANAVPIQLPIGAEDDF 170 (691)
T ss_pred CCceeEEecccccccc
Confidence 346788997763
No 235
>PLN00023 GTP-binding protein; Provisional
Probab=99.52 E-value=1.1e-13 Score=142.58 Aligned_cols=122 Identities=20% Similarity=0.192 Sum_probs=86.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEEC---------------CeeeEEEeCCCCCCchh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC---------------GVPVTLLDTAGIRETDD 381 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~---------------g~~i~LiDTpG~~~~~~ 381 (564)
..+||+|+|..|||||||+++|++..+. ....+....++....+.++ .+.+.||||+|...+..
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~-~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSI-ARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcc-cccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 3489999999999999999999987653 1222333334444445543 24578999999987765
Q ss_pred HHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHH-HHhcccc---------CCCCCCEEEEEecCCCCCC
Q 008468 382 IVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKS---------TESSTPMILVINKIDCAPS 447 (564)
Q Consensus 382 ~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~---------~~~~~PvIvV~NK~DL~~~ 447 (564)
... .+++++|++|+|||+++..++.++..|.. +...... ...+.|+++|+||+||...
T Consensus 99 L~~--------~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 99 CRS--------LFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhH--------HhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 533 45899999999999999888877765544 3322110 0135899999999999654
No 236
>PRK00049 elongation factor Tu; Reviewed
Probab=99.51 E-value=1e-13 Score=148.71 Aligned_cols=155 Identities=19% Similarity=0.158 Sum_probs=110.1
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCc------ce---------eccccCeeEEEEEEEEEECCeeeEEEeCCCCCCch
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSER------AI---------VTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD 380 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~------~~---------vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~ 380 (564)
+..++|+++|++++|||||+++|++... .. .....|+|.+.....+..++..+.++||||+.++.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 3458999999999999999999997310 00 11257889988777777788899999999985432
Q ss_pred hHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEE-EEEecCCCCCCCcchh---hhh-
Q 008468 381 DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMI-LVINKIDCAPSASNEW---NKV- 455 (564)
Q Consensus 381 ~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvI-vV~NK~DL~~~~~~~~---~~l- 455 (564)
.. ....+..+|++++|+|+..+...++.+.+..+... +.|.+ +++||+|+.+...... +++
T Consensus 90 ~~--------~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~------g~p~iiVvvNK~D~~~~~~~~~~~~~~i~ 155 (396)
T PRK00049 90 KN--------MITGAAQMDGAILVVSAADGPMPQTREHILLARQV------GVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (396)
T ss_pred HH--------HHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc------CCCEEEEEEeecCCcchHHHHHHHHHHHH
Confidence 21 22346889999999999988777777777665543 57875 6899999975322111 111
Q ss_pred ---cc-----cCCcEEEEeccCCC----------CHHHHHHHHHHHh
Q 008468 456 ---GN-----SFNDHVFTCAVTGQ----------GIQDLETAIMKIV 484 (564)
Q Consensus 456 ---~~-----~~~~~i~iSAktg~----------GI~eL~~~L~~~l 484 (564)
.. ...+++++||++|. |+..|+++|...+
T Consensus 156 ~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 156 ELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred HHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 11 12578999999875 5677888877654
No 237
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.51 E-value=1.6e-13 Score=133.95 Aligned_cols=119 Identities=17% Similarity=0.259 Sum_probs=78.5
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEE--ECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhc
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVT--VCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALG 397 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~--~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~ 397 (564)
+|+++|++|||||||+++|...++. ..++.++......... ..+..+.+|||||+..+.... ..+++.
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~--~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~--------~~~~~~ 71 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYR--STVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKL--------LETLKN 71 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC--CccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHH--------HHHHhc
Confidence 6899999999999999999987642 3344443333222221 136779999999987654332 234677
Q ss_pred C-cEEEEEecCCCC-CChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCC
Q 008468 398 A-DVIIMTVSAVDG-WTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448 (564)
Q Consensus 398 a-D~vl~ViD~s~~-~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~ 448 (564)
+ +++|+|+|+++. .+..+. +.+..++........+.|+++|+||+|+....
T Consensus 72 ~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 72 SAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred cCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence 7 999999999885 233322 33333332222223578999999999987653
No 238
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.51 E-value=1.4e-13 Score=148.37 Aligned_cols=157 Identities=20% Similarity=0.150 Sum_probs=102.1
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC--cceeccccCeeEEEEEEEEEE------------------C--------Cee
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE--RAIVTEIAGTTRDVIEASVTV------------------C--------GVP 367 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~--~~~vs~~~gtT~d~~~~~~~~------------------~--------g~~ 367 (564)
+..++|+++|+.++|||||+.+|.+.. ........+.|.+.......+ + ...
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 345899999999999999999997631 111112345555432211111 1 257
Q ss_pred eEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCC-ChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCC
Q 008468 368 VTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGW-TSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446 (564)
Q Consensus 368 i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~-s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~ 446 (564)
+.||||||..++... .......+|++++|+|++++. ..+..+.+..+... ...|+++|+||+|+.+
T Consensus 87 i~liDtPG~~~f~~~--------~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~-----~i~~iiVVlNK~Dl~~ 153 (411)
T PRK04000 87 VSFVDAPGHETLMAT--------MLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII-----GIKNIVIVQNKIDLVS 153 (411)
T ss_pred EEEEECCCHHHHHHH--------HHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-----CCCcEEEEEEeecccc
Confidence 899999997543221 223356789999999999875 45545555444321 1246899999999976
Q ss_pred CCcchh--h---hhcc----cCCcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 447 SASNEW--N---KVGN----SFNDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 447 ~~~~~~--~---~l~~----~~~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
...... + .+.. ...+++++||++|.|+++|++.|.+.+.
T Consensus 154 ~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 154 KERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred chhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 433211 1 2211 1257899999999999999999998764
No 239
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.51 E-value=1.3e-13 Score=147.92 Aligned_cols=154 Identities=19% Similarity=0.150 Sum_probs=105.2
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC------Ccce---------eccccCeeEEEEEEEEEECCeeeEEEeCCCCCCch
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS------ERAI---------VTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD 380 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~------~~~~---------vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~ 380 (564)
+..++|+++|+.++|||||+++|++. .... .....|+|.+.....+..++..+.||||||++++.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 34489999999999999999999842 1110 11237889988777777678889999999987543
Q ss_pred hHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEE-EEEecCCCCCCCcchh------h
Q 008468 381 DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMI-LVINKIDCAPSASNEW------N 453 (564)
Q Consensus 381 ~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvI-vV~NK~DL~~~~~~~~------~ 453 (564)
.. ....+..+|++++|+|+..+...++.+.+..+... +.|.+ +|+||+|+.+...... +
T Consensus 90 ~~--------~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~------gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~ 155 (394)
T TIGR00485 90 KN--------MITGAAQMDGAILVVSATDGPMPQTREHILLARQV------GVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (394)
T ss_pred HH--------HHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc------CCCEEEEEEEecccCCHHHHHHHHHHHHH
Confidence 21 12335688999999999988777777766665433 56755 6899999975432111 1
Q ss_pred hhcc------cCCcEEEEeccCCC--------CHHHHHHHHHHH
Q 008468 454 KVGN------SFNDHVFTCAVTGQ--------GIQDLETAIMKI 483 (564)
Q Consensus 454 ~l~~------~~~~~i~iSAktg~--------GI~eL~~~L~~~ 483 (564)
++.. ...+++++||++|. ++.++++.|.+.
T Consensus 156 ~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~ 199 (394)
T TIGR00485 156 ELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEY 199 (394)
T ss_pred HHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhc
Confidence 1111 11578999999874 344555555443
No 240
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.51 E-value=3e-14 Score=136.49 Aligned_cols=155 Identities=25% Similarity=0.299 Sum_probs=117.5
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEEC-Ceee--EEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC-GVPV--TLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~-g~~i--~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
.+|++|||+.++|||+|+..+.... +...|.+|--|.....+.++ |.++ .||||+|+.+++... -..
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~--fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlR--------pls 73 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNA--FPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLR--------PLS 73 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCc--CcccccCeEEccceEEEEecCCCEEEEeeeecCCCccccccc--------ccC
Confidence 3799999999999999999998875 45777777778888888885 8665 679999999886531 124
Q ss_pred hhcCcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCCcch------------h---hhhccc
Q 008468 395 ALGADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE------------W---NKVGNS 458 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~------------~---~~l~~~ 458 (564)
+.++|+++++|++.++.++++. ..| ..+.....++.|+|+|++|.||.+..... . ..+++.
T Consensus 74 Y~~tdvfl~cfsv~~p~S~~nv~~kW---~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~ 150 (198)
T KOG0393|consen 74 YPQTDVFLLCFSVVSPESFENVKSKW---IPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKE 150 (198)
T ss_pred CCCCCEEEEEEEcCChhhHHHHHhhh---hHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHH
Confidence 8899999999999999888875 223 22222345789999999999998432110 0 222222
Q ss_pred C--CcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 459 F--NDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 459 ~--~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
. ..|+++||++..|+.++|+...+.+.
T Consensus 151 iga~~y~EcSa~tq~~v~~vF~~a~~~~l 179 (198)
T KOG0393|consen 151 IGAVKYLECSALTQKGVKEVFDEAIRAAL 179 (198)
T ss_pred hCcceeeeehhhhhCCcHHHHHHHHHHHh
Confidence 2 56999999999999999999888764
No 241
>PTZ00258 GTP-binding protein; Provisional
Probab=99.51 E-value=1.6e-13 Score=145.29 Aligned_cols=92 Identities=29% Similarity=0.300 Sum_probs=74.2
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC-----------------eeeEEEeCCCCC
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG-----------------VPVTLLDTAGIR 377 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g-----------------~~i~LiDTpG~~ 377 (564)
..++++|+|+|.||||||||+|+|++.. ..++++|+||++.....+.+.+ .++.++||||+.
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 3667999999999999999999998877 5789999999999988887753 348999999998
Q ss_pred CchhHHHHhhhhhhhhhhhcCcEEEEEecCC
Q 008468 378 ETDDIVEKIGVERSEAVALGADVIIMTVSAV 408 (564)
Q Consensus 378 ~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s 408 (564)
......+.++ .+....++++|++++|+|+.
T Consensus 97 ~ga~~g~gLg-~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGASEGEGLG-NAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCcchhHHH-HHHHHHHHHCCEEEEEEeCC
Confidence 5443333333 24456689999999999984
No 242
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=2.9e-13 Score=145.06 Aligned_cols=152 Identities=26% Similarity=0.347 Sum_probs=121.1
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEEC---CeeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC---GVPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~---g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
++-|+++|+-.-|||||+..+-+...+ ..+--|.|...-.+++.++ ...+.|+||||+.-|..+. ++-
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va-~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mR-------aRG- 75 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMR-------ARG- 75 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccc-cccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHH-------hcC-
Confidence 356999999999999999999888764 4677889999999998885 4689999999987665542 222
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhcc---------cCCcEEE
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGN---------SFNDHVF 464 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~---------~~~~~i~ 464 (564)
..-+|++++|+|+.++...+..+.++..... +.|+++++||+|+.+.+.... .++.+ ....+++
T Consensus 76 a~vtDIaILVVa~dDGv~pQTiEAI~hak~a------~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~Vp 149 (509)
T COG0532 76 ASVTDIAILVVAADDGVMPQTIEAINHAKAA------GVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVP 149 (509)
T ss_pred CccccEEEEEEEccCCcchhHHHHHHHHHHC------CCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEE
Confidence 4678999999999999999999888877653 799999999999986654332 22221 1145899
Q ss_pred EeccCCCCHHHHHHHHHHHh
Q 008468 465 TCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 465 iSAktg~GI~eL~~~L~~~l 484 (564)
+||++|.|+++|++.+.-..
T Consensus 150 vSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 150 VSAKTGEGIDELLELILLLA 169 (509)
T ss_pred eeccCCCCHHHHHHHHHHHH
Confidence 99999999999999887544
No 243
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.8e-13 Score=128.21 Aligned_cols=156 Identities=20% Similarity=0.255 Sum_probs=117.9
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+..+|+++|--|+||||+++.|-..+. ++..| |.......+.+.+..+.+||..|+......+ +.|+
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~--vttvP--TiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW--------~~Y~ 82 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTVP--TIGFNVETVEYKNISFTVWDVGGQEKLRPLW--------KHYF 82 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCc--ccCCC--ccccceeEEEEcceEEEEEecCCCcccccch--------hhhc
Confidence 4558999999999999999999988774 44444 4556667788889999999999997666554 4669
Q ss_pred hcCcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-------hhhcccCCcEEEEec
Q 008468 396 LGADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-------NKVGNSFNDHVFTCA 467 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-------~~l~~~~~~~i~iSA 467 (564)
.+.+++|||+|.++.....+. +.+..++.... ..+.|+++.+||.|+........ ..+......+-.++|
T Consensus 83 ~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~--l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a 160 (181)
T KOG0070|consen 83 QNTQGLIFVVDSSDRERIEEAKEELHRMLAEPE--LRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA 160 (181)
T ss_pred cCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcc--cCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence 999999999999987655443 34444444322 35789999999999987765432 222232234677899
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 008468 468 VTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 468 ktg~GI~eL~~~L~~~l~ 485 (564)
.+|+|+.+-++++.+.+.
T Consensus 161 ~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 161 ISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred cccccHHHHHHHHHHHHh
Confidence 999999999999998774
No 244
>PLN03126 Elongation factor Tu; Provisional
Probab=99.49 E-value=4.2e-13 Score=146.61 Aligned_cols=143 Identities=17% Similarity=0.126 Sum_probs=103.0
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcc---------------eeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCch
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERA---------------IVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD 380 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~---------------~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~ 380 (564)
+..++|+++|++++|||||+++|++.... ......++|.+.....+..++..+.++||||+.++-
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 158 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence 45589999999999999999999963211 112346788888777788889999999999986643
Q ss_pred hHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCC-EEEEEecCCCCCCCcchh---hhh-
Q 008468 381 DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTP-MILVINKIDCAPSASNEW---NKV- 455 (564)
Q Consensus 381 ~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~P-vIvV~NK~DL~~~~~~~~---~~l- 455 (564)
.. ....+..+|++++|+|+..+...+..+.+..+... ++| +|+++||+|+.+...... +++
T Consensus 159 ~~--------~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~------gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~ 224 (478)
T PLN03126 159 KN--------MITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV------GVPNMVVFLNKQDQVDDEELLELVELEVR 224 (478)
T ss_pred HH--------HHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc------CCCeEEEEEecccccCHHHHHHHHHHHHH
Confidence 22 12346789999999999998877777777665443 577 778999999976322111 111
Q ss_pred ---cc-----cCCcEEEEeccCCCC
Q 008468 456 ---GN-----SFNDHVFTCAVTGQG 472 (564)
Q Consensus 456 ---~~-----~~~~~i~iSAktg~G 472 (564)
.. ...+++++||.+|.+
T Consensus 225 ~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 225 ELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHHHhcCCCcCcceEEEEEcccccc
Confidence 11 135789999998854
No 245
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.48 E-value=3e-13 Score=132.94 Aligned_cols=112 Identities=27% Similarity=0.351 Sum_probs=77.1
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceec------------------cccCeeEEEEEEEEEEC-----CeeeEEEeCCCC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVT------------------EIAGTTRDVIEASVTVC-----GVPVTLLDTAGI 376 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs------------------~~~gtT~d~~~~~~~~~-----g~~i~LiDTpG~ 376 (564)
+|+|+|+.|+|||||+++|+........ ...++|.......+.+. ...+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 5899999999999999999976533210 01223332222223222 367899999999
Q ss_pred CCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCC
Q 008468 377 RETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445 (564)
Q Consensus 377 ~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~ 445 (564)
.++... ...++..+|++++|+|++++.+....+.+..... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~--------~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~------~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDE--------VAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL------EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHH--------HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEECcccC
Confidence 876443 2345789999999999998876655454444332 257999999999986
No 246
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.47 E-value=1.2e-12 Score=122.50 Aligned_cols=154 Identities=21% Similarity=0.199 Sum_probs=118.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCccee------cccc---CeeEEEEEEEEEECC-eeeEEEeCCCCCCchhHHHHh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIV------TEIA---GTTRDVIEASVTVCG-VPVTLLDTAGIRETDDIVEKI 386 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~v------s~~~---gtT~d~~~~~~~~~g-~~i~LiDTpG~~~~~~~ie~~ 386 (564)
.+.||+|+|+.++||||++.++.......+ .... .||.-.....+.+++ ..+.|+||||+..+.-+++-.
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l 88 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEIL 88 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHH
Confidence 458999999999999999999998763221 1122 366666667777766 899999999999888776643
Q ss_pred hhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhccc--CCcE
Q 008468 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGNS--FNDH 462 (564)
Q Consensus 387 ~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~~--~~~~ 462 (564)
.+.++..++++|.+.+..+....+++.+.... ..|+++++||.||.+....+. +.+... ..++
T Consensus 89 --------~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~-----~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~v 155 (187)
T COG2229 89 --------SRGAVGAIVLVDSSRPITFHAEEIIDFLTSRN-----PIPVVVAINKQDLFDALPPEKIREALKLELLSVPV 155 (187)
T ss_pred --------hCCcceEEEEEecCCCcchHHHHHHHHHhhcc-----CCCEEEEeeccccCCCCCHHHHHHHHHhccCCCce
Confidence 78899999999999998885556655544321 289999999999998876654 222222 4689
Q ss_pred EEEeccCCCCHHHHHHHHHHH
Q 008468 463 VFTCAVTGQGIQDLETAIMKI 483 (564)
Q Consensus 463 i~iSAktg~GI~eL~~~L~~~ 483 (564)
|+++|.+++|..+.++.+...
T Consensus 156 i~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 156 IEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeeecccchhHHHHHHHHHhh
Confidence 999999999999988888765
No 247
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=4.4e-13 Score=142.69 Aligned_cols=155 Identities=22% Similarity=0.265 Sum_probs=120.0
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcce--------------eccccCeeEEEEEEEEEECC---eeeEEEeCCCCCCchhH
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAI--------------VTEIAGTTRDVIEASVTVCG---VPVTLLDTAGIRETDDI 382 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~--------------vs~~~gtT~d~~~~~~~~~g---~~i~LiDTpG~~~~~~~ 382 (564)
+++|+-+-.-|||||..+|+.....+ +....|.|.......+.+.+ +.++++||||+.+|...
T Consensus 62 NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E 141 (650)
T KOG0462|consen 62 NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE 141 (650)
T ss_pred ceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccce
Confidence 58999999999999999998643321 33456888888888888876 88999999999998776
Q ss_pred HHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhcc----
Q 008468 383 VEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGN---- 457 (564)
Q Consensus 383 ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~---- 457 (564)
++. .+..||++|+|+|++++...+....+....+ .+..+|.|+||+|+...+.... .++.+
T Consensus 142 VsR--------slaac~G~lLvVDA~qGvqAQT~anf~lAfe------~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~ 207 (650)
T KOG0462|consen 142 VSR--------SLAACDGALLVVDASQGVQAQTVANFYLAFE------AGLAIIPVLNKIDLPSADPERVENQLFELFDI 207 (650)
T ss_pred ehe--------hhhhcCceEEEEEcCcCchHHHHHHHHHHHH------cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcC
Confidence 542 3778999999999999988877644433332 2678999999999988765543 22222
Q ss_pred cCCcEEEEeccCCCCHHHHHHHHHHHhhccC
Q 008468 458 SFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ 488 (564)
Q Consensus 458 ~~~~~i~iSAktg~GI~eL~~~L~~~l~~~~ 488 (564)
...+++.+|||+|.|+++++++|.+.+..+.
T Consensus 208 ~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~ 238 (650)
T KOG0462|consen 208 PPAEVIYVSAKTGLNVEELLEAIIRRVPPPK 238 (650)
T ss_pred CccceEEEEeccCccHHHHHHHHHhhCCCCC
Confidence 2257899999999999999999999986543
No 248
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=99.46 E-value=1.7e-13 Score=111.61 Aligned_cols=70 Identities=39% Similarity=0.604 Sum_probs=60.4
Q ss_pred CCccccccHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHhcccCCCCchHHHHhhhhcCC
Q 008468 492 GGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFC 561 (564)
Q Consensus 492 ~~~~~~~~~r~~~~l~~~~~~L~~~~~~l~~~l~~el~~~eLr~a~~~L~eitG~~~~e~iL~~IF~~FC 561 (564)
.+..+..+.||++.++++.++|+++...+..+++.|+++++|+.|+..|++|||+..+|||||+||++||
T Consensus 4 ~~~~~l~~~Rq~~~L~~a~~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~FC 73 (73)
T PF12631_consen 4 NEDPILTNARQRQLLEQALEHLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNFC 73 (73)
T ss_dssp CTSSS--SHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS-
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhhC
Confidence 3457889999999999999999999999999999999999999999999999999999999999999999
No 249
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.46 E-value=1.9e-12 Score=132.70 Aligned_cols=131 Identities=21% Similarity=0.259 Sum_probs=92.8
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+.++|+++|.+||||||++|+|++++.+.++...+++..........+|..+.+|||||+.+.....+. ..+..+.++
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~-~~~~ik~~l 114 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQ-AVNIIKRFL 114 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHH-HHHHHHHHh
Confidence 3458999999999999999999999987777777776666555556678999999999999876432222 122222222
Q ss_pred --hcCcEEEEEecCCC-CCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCC
Q 008468 396 --LGADVIIMTVSAVD-GWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448 (564)
Q Consensus 396 --~~aD~vl~ViD~s~-~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~ 448 (564)
...|+++||...+. ..+..+...++.+...+.. ....++|+|+|++|..+.+
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~-~iw~~~IVVfTh~d~~~pd 169 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGK-DIWRKSLVVLTHAQFSPPD 169 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhh-hhhccEEEEEECCccCCCC
Confidence 36899999965543 3455566666666654421 2345799999999987543
No 250
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.45 E-value=1.3e-12 Score=144.53 Aligned_cols=115 Identities=23% Similarity=0.311 Sum_probs=83.3
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcce-----e----------cc------ccCeeEEEEEEEEEECCeeeEEEeCCCCC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAI-----V----------TE------IAGTTRDVIEASVTVCGVPVTLLDTAGIR 377 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~-----v----------s~------~~gtT~d~~~~~~~~~g~~i~LiDTpG~~ 377 (564)
-+|+|+|++|+|||||+++|+.....+ + ++ ..+.|.......+.+++..+++|||||+.
T Consensus 11 Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~ 90 (526)
T PRK00741 11 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHE 90 (526)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCch
Confidence 589999999999999999997422111 1 11 11333444455678889999999999997
Q ss_pred CchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCC
Q 008468 378 ETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447 (564)
Q Consensus 378 ~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~ 447 (564)
++... ...++..+|++|+|+|++++.......+|..... .++|+++++||+|+...
T Consensus 91 df~~~--------~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~------~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 91 DFSED--------TYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRL------RDTPIFTFINKLDRDGR 146 (526)
T ss_pred hhHHH--------HHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHh------cCCCEEEEEECCccccc
Confidence 66432 2345788999999999998876665566654432 37899999999998653
No 251
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.2e-12 Score=139.31 Aligned_cols=157 Identities=27% Similarity=0.371 Sum_probs=122.8
Q ss_pred hhhcCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEE-CCeeeEEEeCCCCCCchhHHHHhhhhhh
Q 008468 313 KLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTV-CGVPVTLLDTAGIRETDDIVEKIGVERS 391 (564)
Q Consensus 313 ~~~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~-~g~~i~LiDTpG~~~~~~~ie~~~i~~~ 391 (564)
.+.+.+.-|.|+|+..-|||||+.+|-+...+ -....|.|...-...+.+ +|..++|+||||+.-|..+. +
T Consensus 148 ~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VA-A~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMR-------a 219 (683)
T KOG1145|consen 148 LLEPRPPVVTIMGHVDHGKTTLLDALRKSSVA-AGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMR-------A 219 (683)
T ss_pred hcCCCCCeEEEeecccCChhhHHHHHhhCcee-hhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHH-------h
Confidence 34456788999999999999999999988765 366778888877666666 68899999999986665442 2
Q ss_pred hhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhccc---------CCc
Q 008468 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGNS---------FND 461 (564)
Q Consensus 392 ~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~~---------~~~ 461 (564)
+ -..-+|++++|+.+.++...+..+.+..... .+.|+|+++||+|.+....... +++... ..+
T Consensus 220 R-GA~vtDIvVLVVAadDGVmpQT~EaIkhAk~------A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQ 292 (683)
T KOG1145|consen 220 R-GANVTDIVVLVVAADDGVMPQTLEAIKHAKS------ANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQ 292 (683)
T ss_pred c-cCccccEEEEEEEccCCccHhHHHHHHHHHh------cCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCcee
Confidence 2 2567899999999999999999888877654 3799999999999876554332 333221 146
Q ss_pred EEEEeccCCCCHHHHHHHHHHHh
Q 008468 462 HVFTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 462 ~i~iSAktg~GI~eL~~~L~~~l 484 (564)
++++||++|+|++.|.+++.-..
T Consensus 293 vipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 293 VIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred EEEeecccCCChHHHHHHHHHHH
Confidence 89999999999999999887654
No 252
>PRK13351 elongation factor G; Reviewed
Probab=99.44 E-value=7.7e-13 Score=151.60 Aligned_cols=115 Identities=23% Similarity=0.253 Sum_probs=87.8
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcce-----------ecc------ccCeeEEEEEEEEEECCeeeEEEeCCCCCCchh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAI-----------VTE------IAGTTRDVIEASVTVCGVPVTLLDTAGIRETDD 381 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~-----------vs~------~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~ 381 (564)
.+|+|+|+.|+|||||+++|+.....+ +.+ ..+.|.......+.+++..+.+|||||+.++..
T Consensus 9 rni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~ 88 (687)
T PRK13351 9 RNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFTG 88 (687)
T ss_pred cEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHHH
Confidence 689999999999999999998642110 111 134455555667788899999999999977654
Q ss_pred HHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCC
Q 008468 382 IVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447 (564)
Q Consensus 382 ~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~ 447 (564)
.. ..+++.+|++++|+|++++...+....|..+.. .++|+++|+||+|+...
T Consensus 89 ~~--------~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~------~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 89 EV--------ERSLRVLDGAVVVFDAVTGVQPQTETVWRQADR------YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HH--------HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh------cCCCEEEEEECCCCCCC
Confidence 32 345889999999999999887777777766543 26899999999998754
No 253
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.44 E-value=1.9e-12 Score=117.17 Aligned_cols=164 Identities=20% Similarity=0.189 Sum_probs=128.6
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC---eeeEEEeCCCCCCchhHHHHhhhhhh
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG---VPVTLLDTAGIRETDDIVEKIGVERS 391 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g---~~i~LiDTpG~~~~~~~ie~~~i~~~ 391 (564)
..+..||+++|.-+||||+++..|+-.+...-+++.+|..|++...++-+. ..+.|.||+|+.+.. ++.-
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~-------~eLp 78 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQ-------QELP 78 (198)
T ss_pred hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCch-------hhhh
Confidence 345689999999999999999999887766667788888888888877653 468899999997653 2334
Q ss_pred hhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEec
Q 008468 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCA 467 (564)
Q Consensus 392 ~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSA 467 (564)
+.++.-+|++++|||..++.+++..+.++...... .....+|+++.+||+|+........ ..++. .-...++++|
T Consensus 79 rhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~-KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta 157 (198)
T KOG3883|consen 79 RHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKH-KDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTA 157 (198)
T ss_pred HhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhc-cccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEe
Confidence 57789999999999999999998888777755442 2345789999999999976554443 22322 2356899999
Q ss_pred cCCCCHHHHHHHHHHHhhc
Q 008468 468 VTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 468 ktg~GI~eL~~~L~~~l~~ 486 (564)
.....+-+.|.++...+..
T Consensus 158 ~dR~sL~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 158 MDRPSLYEPFTYLASRLHQ 176 (198)
T ss_pred ccchhhhhHHHHHHHhccC
Confidence 9999999999999887754
No 254
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.43 E-value=9.1e-12 Score=129.80 Aligned_cols=148 Identities=23% Similarity=0.330 Sum_probs=92.3
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC------CcceeccccCee-----------------E--EEEEEE----------
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS------ERAIVTEIAGTT-----------------R--DVIEAS---------- 360 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~------~~~~vs~~~gtT-----------------~--d~~~~~---------- 360 (564)
...+.|+|.|+||+|||||++.|... ....+..-|... . ......
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~ 133 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV 133 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccch
Confidence 34588999999999999999987532 111111111110 0 001111
Q ss_pred ----------EEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHH-HHhccccC
Q 008468 361 ----------VTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKST 429 (564)
Q Consensus 361 ----------~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~ 429 (564)
+...|..+.|+||+|.++.... ....||++++|.+...+ ++.+.... ..
T Consensus 134 a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~-----------i~~~aD~vlvv~~p~~g---d~iq~~k~gi~------ 193 (332)
T PRK09435 134 ARKTRETMLLCEAAGYDVILVETVGVGQSETA-----------VAGMVDFFLLLQLPGAG---DELQGIKKGIM------ 193 (332)
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCCccchhH-----------HHHhCCEEEEEecCCch---HHHHHHHhhhh------
Confidence 1123577999999999865433 25569999999764333 33332222 21
Q ss_pred CCCCCEEEEEecCCCCCCCcchh--h----hhc-------ccCCcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 430 ESSTPMILVINKIDCAPSASNEW--N----KVG-------NSFNDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 430 ~~~~PvIvV~NK~DL~~~~~~~~--~----~l~-------~~~~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
....++|+||+|+........ . .+. .+..+++.+||++|.|+++|++.|.+.+.
T Consensus 194 --E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 194 --ELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred --hhhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 223489999999876442211 1 111 12257999999999999999999999875
No 255
>PTZ00099 rab6; Provisional
Probab=99.43 E-value=1.8e-12 Score=123.85 Aligned_cols=123 Identities=17% Similarity=0.114 Sum_probs=87.9
Q ss_pred eEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHH-HHHhccccC
Q 008468 353 TRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLN-RIQSNKKST 429 (564)
Q Consensus 353 T~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~ 429 (564)
..+.....+.+++ ..+.||||||...+...+. .+++.||++|+|||++++.++++...|. .+... .
T Consensus 14 g~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~--------~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~---~ 82 (176)
T PTZ00099 14 GIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIP--------SYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE---R 82 (176)
T ss_pred ceEEEEEEEEECCEEEEEEEEECCChHHhhhccH--------HHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh---c
Confidence 3466666667766 5678999999976654432 4589999999999999987777764443 33332 1
Q ss_pred CCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCCCCHHHHHHHHHHHhhc
Q 008468 430 ESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 430 ~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
..+.|+++|+||+|+........ ..+.. ....++++||++|.||+++|++|.+.+..
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 24689999999999975433322 12222 22468999999999999999999998854
No 256
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.42 E-value=1.9e-12 Score=128.18 Aligned_cols=112 Identities=24% Similarity=0.286 Sum_probs=81.3
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccc---------------cCeeEEEEEEEEEEC----------CeeeEEEeCC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEI---------------AGTTRDVIEASVTVC----------GVPVTLLDTA 374 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~---------------~gtT~d~~~~~~~~~----------g~~i~LiDTp 374 (564)
+|+|+|+.++|||||+++|+.....+.... .+.|.......+.+. +..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999987543221111 223333222223333 6778999999
Q ss_pred CCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCC
Q 008468 375 GIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445 (564)
Q Consensus 375 G~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~ 445 (564)
|+.++... ...++..+|++++|+|++.+.+.+....+...... ++|+|+|+||+|+.
T Consensus 82 G~~~f~~~--------~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~------~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSE--------VTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE------RVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHH--------HHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc------CCCEEEEEECCCcc
Confidence 99887544 23558999999999999998888877777665432 57999999999986
No 257
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.41 E-value=1.2e-12 Score=142.38 Aligned_cols=145 Identities=19% Similarity=0.161 Sum_probs=100.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcc------------------------ee------ccccCeeEEEEEEEEEECCe
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERA------------------------IV------TEIAGTTRDVIEASVTVCGV 366 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~------------------------~v------s~~~gtT~d~~~~~~~~~g~ 366 (564)
..++|+++|+.++|||||+.+|+..... .+ ....|+|.+.....+.+++.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 4489999999999999999999752110 01 12357888888888888999
Q ss_pred eeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCC-------hhHHHHHHHHHhccccCCCCCC-EEEE
Q 008468 367 PVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWT-------SEDSELLNRIQSNKKSTESSTP-MILV 438 (564)
Q Consensus 367 ~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s-------~~~~~~l~~l~~~~~~~~~~~P-vIvV 438 (564)
.++|+||||+.++... ....+..+|++++|+|++.+.. .+..+.|..+... ++| +|++
T Consensus 86 ~i~lIDtPGh~~f~~~--------~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~------gi~~iiv~ 151 (446)
T PTZ00141 86 YFTIIDAPGHRDFIKN--------MITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL------GVKQMIVC 151 (446)
T ss_pred EEEEEECCChHHHHHH--------HHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc------CCCeEEEE
Confidence 9999999998765322 2344788999999999998752 3555555554432 556 6799
Q ss_pred EecCCCCC--CCc--chh--hhhcc---------cCCcEEEEeccCCCCHHH
Q 008468 439 INKIDCAP--SAS--NEW--NKVGN---------SFNDHVFTCAVTGQGIQD 475 (564)
Q Consensus 439 ~NK~DL~~--~~~--~~~--~~l~~---------~~~~~i~iSAktg~GI~e 475 (564)
+||+|... ... ... +++.. ...+++++||.+|+|+.+
T Consensus 152 vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 152 INKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred EEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 99999532 111 111 12211 125689999999999864
No 258
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.41 E-value=7.6e-12 Score=132.14 Aligned_cols=161 Identities=22% Similarity=0.284 Sum_probs=118.0
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCc----hhHHHHhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRET----DDIVEKIGVERS 391 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~----~~~ie~~~i~~~ 391 (564)
.+.-+++|+|.||||||||+|.++..+. .|.+|++||.....+.+.+.-..+.++||||+-+. .+.+|...++ +
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradv-evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsIT-A 243 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADD-EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT-A 243 (620)
T ss_pred CCcCeEEEecCCCCCcHhhccccccccc-ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHH-H
Confidence 3456899999999999999999998875 58999999999999999998889999999999743 3445544332 2
Q ss_pred hhhhhcCcEEEEEecCCC--CCChhH-HHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh------hhhccc-CCc
Q 008468 392 EAVALGADVIIMTVSAVD--GWTSED-SELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW------NKVGNS-FND 461 (564)
Q Consensus 392 ~~~l~~aD~vl~ViD~s~--~~s~~~-~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~------~~l~~~-~~~ 461 (564)
...++ -+|+|++|.+. +.+..+ .+++..+...+ .++|+|+|+||+|+.......+ +.+.+. ..+
T Consensus 244 LAHLr--aaVLYfmDLSe~CGySva~QvkLfhsIKpLF----aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~ 317 (620)
T KOG1490|consen 244 LAHLR--SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF----ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVK 317 (620)
T ss_pred HHHhh--hhheeeeechhhhCCCHHHHHHHHHHhHHHh----cCCceEEEeecccccCccccCHHHHHHHHHHHhccCce
Confidence 22233 46889999875 555443 35555554443 4789999999999987665544 222222 257
Q ss_pred EEEEeccCCCCHHHHHHHHHHHh
Q 008468 462 HVFTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 462 ~i~iSAktg~GI~eL~~~L~~~l 484 (564)
++.+|+.+.+|+-++....++.+
T Consensus 318 v~~tS~~~eegVm~Vrt~ACe~L 340 (620)
T KOG1490|consen 318 VVQTSCVQEEGVMDVRTTACEAL 340 (620)
T ss_pred EEEecccchhceeeHHHHHHHHH
Confidence 89999999999988776655543
No 259
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.40 E-value=8.7e-14 Score=128.67 Aligned_cols=152 Identities=23% Similarity=0.287 Sum_probs=114.3
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccc-cCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEI-AGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~-~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
+|++|+|..+|||||++.+++..-+. .++ .....|..+..+.+++ ..+.+|||+|+.+++.. ++.|+
T Consensus 21 iK~vivGng~VGKssmiqryCkgifT--kdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaI--------tkAyy 90 (246)
T KOG4252|consen 21 IKFVIVGNGSVGKSSMIQRYCKGIFT--KDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAI--------TKAYY 90 (246)
T ss_pred EEEEEECCCccchHHHHHHHhccccc--cccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHH--------HHHHh
Confidence 89999999999999999999965432 233 2233455555555544 45678999999888655 45679
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
+.|.+.++||+.++..+++....|.. +... ..++|.++|-||+|+.+...... +.++. .....+.+|++..
T Consensus 91 rgaqa~vLVFSTTDr~SFea~~~w~~kv~~e----~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked 166 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDRYSFEATLEWYNKVQKE----TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKED 166 (246)
T ss_pred ccccceEEEEecccHHHHHHHHHHHHHHHHH----hccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhh
Confidence 99999999999999988887654543 4433 35799999999999987765543 33332 3356889999999
Q ss_pred CCHHHHHHHHHHHh
Q 008468 471 QGIQDLETAIMKIV 484 (564)
Q Consensus 471 ~GI~eL~~~L~~~l 484 (564)
-|+..+|.+|.+.+
T Consensus 167 ~NV~~vF~YLaeK~ 180 (246)
T KOG4252|consen 167 FNVMHVFAYLAEKL 180 (246)
T ss_pred hhhHHHHHHHHHHH
Confidence 99999999998866
No 260
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.39 E-value=3e-12 Score=130.91 Aligned_cols=123 Identities=20% Similarity=0.308 Sum_probs=82.0
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceecc--------ccCe-eEEEEEEEEEECC--eeeEEEeCCCCCCchh---HHH
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTE--------IAGT-TRDVIEASVTVCG--VPVTLLDTAGIRETDD---IVE 384 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~--------~~gt-T~d~~~~~~~~~g--~~i~LiDTpG~~~~~~---~ie 384 (564)
++|+++|.+|+|||||+|+|++........ ...| +.......+..+| ..+.+|||||+.+..+ .++
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~ 84 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWK 84 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHH
Confidence 799999999999999999999987643321 2333 3444555566667 4588999999975422 111
Q ss_pred H----------------hhhhh-hhhhhhcCcEEEEEecCCC-CCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCC
Q 008468 385 K----------------IGVER-SEAVALGADVIIMTVSAVD-GWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446 (564)
Q Consensus 385 ~----------------~~i~~-~~~~l~~aD~vl~ViD~s~-~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~ 446 (564)
. ..+.+ ....-..+|+++++++.+. +....+.+.++.+.. ++|+|+|+||+|+..
T Consensus 85 ~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-------~v~vi~VinK~D~l~ 157 (276)
T cd01850 85 PIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-------RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-------cCCEEEEEECCCcCC
Confidence 0 00111 0101125899999999875 555666777776642 579999999999976
Q ss_pred CC
Q 008468 447 SA 448 (564)
Q Consensus 447 ~~ 448 (564)
..
T Consensus 158 ~~ 159 (276)
T cd01850 158 PE 159 (276)
T ss_pred HH
Confidence 43
No 261
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=1e-12 Score=121.41 Aligned_cols=161 Identities=19% Similarity=0.262 Sum_probs=115.6
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcc-----eeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERA-----IVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVER 390 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~-----~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~ 390 (564)
++.+.|+|+|.-|+|||||+.++-..... .++. -.+|.....+++.+++.++.+||..|+.....+++
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~k-i~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~------ 87 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSK-ITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWK------ 87 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHH-eecccceeecceeeccceeEEEEcCChHHHHHHHH------
Confidence 44588999999999999999987543210 0111 22455666777888899999999999977666654
Q ss_pred hhhhhhcCcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-h-------hhcccCCc
Q 008468 391 SEAVALGADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-N-------KVGNSFND 461 (564)
Q Consensus 391 ~~~~l~~aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~-------~l~~~~~~ 461 (564)
.++..+|++++|+|++++..+++. ..++.+.... .-.+.|+++.+||.|+.+...... + .+.....+
T Consensus 88 --~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E--~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~ 163 (197)
T KOG0076|consen 88 --KYYWLAHGIIYVIDATDRERFEESKTAFEKVVENE--KLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNP 163 (197)
T ss_pred --HHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHH--HhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCc
Confidence 458999999999999996555543 2333333221 124789999999999976654432 1 11123357
Q ss_pred EEEEeccCCCCHHHHHHHHHHHhhcc
Q 008468 462 HVFTCAVTGQGIQDLETAIMKIVGLH 487 (564)
Q Consensus 462 ~i~iSAktg~GI~eL~~~L~~~l~~~ 487 (564)
+.+|||.+|+||++-.+++.+.+...
T Consensus 164 ~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 164 FQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred cccchhhhcccHHHHHHHHHHHHhhc
Confidence 89999999999999999999987543
No 262
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.37 E-value=7.4e-12 Score=138.55 Aligned_cols=114 Identities=22% Similarity=0.300 Sum_probs=82.4
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcce-----e----------cc------ccCeeEEEEEEEEEECCeeeEEEeCCCCC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAI-----V----------TE------IAGTTRDVIEASVTVCGVPVTLLDTAGIR 377 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~-----v----------s~------~~gtT~d~~~~~~~~~g~~i~LiDTpG~~ 377 (564)
.+|+|+|++|+|||||+++|+.....+ + ++ ..+.|.......+.+++..+++|||||+.
T Consensus 12 RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~ 91 (527)
T TIGR00503 12 RTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHE 91 (527)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChh
Confidence 589999999999999999986422111 1 11 12344455556678889999999999996
Q ss_pred CchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCC
Q 008468 378 ETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446 (564)
Q Consensus 378 ~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~ 446 (564)
++... ...++..+|++|+|+|++++.......+|+.... .+.|+++++||+|+..
T Consensus 92 df~~~--------~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~------~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 92 DFSED--------TYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL------RDTPIFTFMNKLDRDI 146 (527)
T ss_pred hHHHH--------HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh------cCCCEEEEEECccccC
Confidence 55432 2345789999999999998766555555554332 3689999999999864
No 263
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.34 E-value=1.8e-11 Score=126.69 Aligned_cols=131 Identities=19% Similarity=0.183 Sum_probs=87.7
Q ss_pred CCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCC
Q 008468 364 CGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443 (564)
Q Consensus 364 ~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~D 443 (564)
.++.+.|+||+|...... ..+..+|.++++.+.. +..+...+..-. .++|.++|+||+|
T Consensus 125 ~g~D~viidT~G~~~~e~-----------~i~~~aD~i~vv~~~~---~~~el~~~~~~l-------~~~~~ivv~NK~D 183 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSEV-----------DIANMADTFVVVTIPG---TGDDLQGIKAGL-------MEIADIYVVNKAD 183 (300)
T ss_pred CCCCEEEEeCCCCchhhh-----------HHHHhhceEEEEecCC---ccHHHHHHHHHH-------hhhccEEEEEccc
Confidence 367789999999864332 1256689998886543 233333222211 2568899999999
Q ss_pred CCCCCcchh---------hhhcc----cCCcEEEEeccCCCCHHHHHHHHHHHhhccCCCCCCccccccHHHHHHHHHHH
Q 008468 444 CAPSASNEW---------NKVGN----SFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAVNQRQCEQLMRTK 510 (564)
Q Consensus 444 L~~~~~~~~---------~~l~~----~~~~~i~iSAktg~GI~eL~~~L~~~l~~~~~~~~~~~~~~~~r~~~~l~~~~ 510 (564)
+........ ..+.. ...+++++||++|.|+++++++|.+..... .+.....+.||.+.+.++.
T Consensus 184 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~~~----~~~~~l~~~R~~~~l~~a~ 259 (300)
T TIGR00750 184 GEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKTFL----TASGLLQEKRRQRSVEWLK 259 (300)
T ss_pred ccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHHHH----HhccHHHHHHHHHHHHHHH
Confidence 986543211 11111 124689999999999999999999876432 2345677899999999998
Q ss_pred HHHHHHHHH
Q 008468 511 EALVRLKSS 519 (564)
Q Consensus 511 ~~L~~~~~~ 519 (564)
+.+++-+..
T Consensus 260 ~~l~~~l~~ 268 (300)
T TIGR00750 260 KLVEEEVLK 268 (300)
T ss_pred HHHHHHHHH
Confidence 887665444
No 264
>PRK12740 elongation factor G; Reviewed
Probab=99.33 E-value=1e-11 Score=141.99 Aligned_cols=110 Identities=24% Similarity=0.282 Sum_probs=83.8
Q ss_pred EcCCCCChhHHHHHhhcCCccee-----------cc------ccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHh
Q 008468 324 VGRPNVGKSSLLNAWSKSERAIV-----------TE------IAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI 386 (564)
Q Consensus 324 vG~~nvGKSSLlN~L~~~~~~~v-----------s~------~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~ 386 (564)
+|++|+|||||+++|+.....+. .+ ..+.|.+.....+.+++..+.+|||||..++...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~---- 76 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGE---- 76 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHH----
Confidence 59999999999999966543221 11 2566777777788899999999999998764332
Q ss_pred hhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCC
Q 008468 387 GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447 (564)
Q Consensus 387 ~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~ 447 (564)
...++..+|++++|+|++.+........|..+.. .++|+++|+||+|+...
T Consensus 77 ----~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~------~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 77 ----VERALRVLDGAVVVVCAVGGVEPQTETVWRQAEK------YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred ----HHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHH------cCCCEEEEEECCCCCCC
Confidence 2345788999999999999877777666665543 26899999999998754
No 265
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=3.1e-11 Score=107.85 Aligned_cols=154 Identities=19% Similarity=0.264 Sum_probs=113.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+.++|+.+|-.++||||++..|.-... +..+| |..+....+++.+..+++||..|+......+ +.|+.
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~--~~~ip--TvGFnvetVtykN~kfNvwdvGGqd~iRplW--------rhYy~ 83 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQS--VTTIP--TVGFNVETVTYKNVKFNVWDVGGQDKIRPLW--------RHYYT 83 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCC--ccccc--ccceeEEEEEeeeeEEeeeeccCchhhhHHH--------Hhhcc
Confidence 468999999999999999999987652 33333 3445566788899999999999987665553 46799
Q ss_pred cCcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-------hhhcccCCcEEEEecc
Q 008468 397 GADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-------NKVGNSFNDHVFTCAV 468 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-------~~l~~~~~~~i~iSAk 468 (564)
...++|||+|..+....++. +.+..+.... ...+.|+++..||.|+.......+ +.++.....+.++||.
T Consensus 84 gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~--em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~ 161 (180)
T KOG0071|consen 84 GTQGLIFVVDSADRDRIEEARNELHRIINDR--EMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCAL 161 (180)
T ss_pred CCceEEEEEeccchhhHHHHHHHHHHHhCCH--hhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccc
Confidence 99999999999876444432 3344444332 234689999999999988765543 2222333447889999
Q ss_pred CCCCHHHHHHHHHHHh
Q 008468 469 TGQGIQDLETAIMKIV 484 (564)
Q Consensus 469 tg~GI~eL~~~L~~~l 484 (564)
+|+|+.+=+.+|...+
T Consensus 162 ~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 162 SGDGLKEGLSWLSNNL 177 (180)
T ss_pred cchhHHHHHHHHHhhc
Confidence 9999999999887754
No 266
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.30 E-value=2.5e-11 Score=120.56 Aligned_cols=135 Identities=21% Similarity=0.278 Sum_probs=90.4
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcCC-cceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhh
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKSE-RAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEA 393 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~~-~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~ 393 (564)
...+..|+|+|.+|+|||||+|.|.+.. ...+....|+. .....++..+.++||||.. . ....
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-----~i~~~~~~~i~~vDtPg~~--~---------~~l~ 99 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-----TVVTGKKRRLTFIECPNDI--N---------AMID 99 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-----EEEecCCceEEEEeCCchH--H---------HHHH
Confidence 4566889999999999999999998752 22233334431 1122367889999999842 1 1223
Q ss_pred hhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCE-EEEEecCCCCCCCc-chh--hh----hcc---cCCcE
Q 008468 394 VALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPM-ILVINKIDCAPSAS-NEW--NK----VGN---SFNDH 462 (564)
Q Consensus 394 ~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~Pv-IvV~NK~DL~~~~~-~~~--~~----l~~---~~~~~ 462 (564)
.++.+|++++|+|++.+....+..++..+... +.|. ++|+||+|+..... ... +. +.. .+.++
T Consensus 100 ~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~------g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki 173 (225)
T cd01882 100 IAKVADLVLLLIDASFGFEMETFEFLNILQVH------GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKL 173 (225)
T ss_pred HHHhcCEEEEEEecCcCCCHHHHHHHHHHHHc------CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcE
Confidence 46889999999999988777776666655432 4674 55999999974322 111 11 221 23689
Q ss_pred EEEeccCCC
Q 008468 463 VFTCAVTGQ 471 (564)
Q Consensus 463 i~iSAktg~ 471 (564)
+++||++.-
T Consensus 174 ~~iSa~~~~ 182 (225)
T cd01882 174 FYLSGIVHG 182 (225)
T ss_pred EEEeeccCC
Confidence 999999873
No 267
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.29 E-value=1.9e-11 Score=132.90 Aligned_cols=156 Identities=18% Similarity=0.141 Sum_probs=99.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcce--eccccCeeEEEEEEEE---------------EE----------------
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAI--VTEIAGTTRDVIEASV---------------TV---------------- 363 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~--vs~~~gtT~d~~~~~~---------------~~---------------- 363 (564)
..++|+++|+...|||||+.+|++..... .....|.|.+.-.... .+
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 44899999999999999999999753211 1112233322211100 00
Q ss_pred --CCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCC-CChhHHHHHHHHHhccccCCCCCCEEEEEe
Q 008468 364 --CGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDG-WTSEDSELLNRIQSNKKSTESSTPMILVIN 440 (564)
Q Consensus 364 --~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~-~s~~~~~~l~~l~~~~~~~~~~~PvIvV~N 440 (564)
-...+.|+||||+.++-. .....+..+|++++|+|+..+ ...+..+.+..+... .-.++|+|+|
T Consensus 113 ~~~~~~i~~IDtPGH~~fi~--------~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l-----gi~~iIVvlN 179 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHDILMA--------TMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM-----KLKHIIILQN 179 (460)
T ss_pred ccccceEeeeeCCCHHHHHH--------HHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc-----CCCcEEEEEe
Confidence 023688999999754421 123446789999999999975 345444444332221 1246899999
Q ss_pred cCCCCCCCcchh--hhhcc-------cCCcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 441 KIDCAPSASNEW--NKVGN-------SFNDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 441 K~DL~~~~~~~~--~~l~~-------~~~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
|+|+.+...... +++.+ ...+++++||++|.|++.|++.|.+.+.
T Consensus 180 KiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 180 KIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred cccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 999975332211 22211 2467999999999999999999997664
No 268
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.27 E-value=2.7e-11 Score=131.83 Aligned_cols=146 Identities=17% Similarity=0.145 Sum_probs=97.8
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcc------------------------ee------ccccCeeEEEEEEEEEECC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERA------------------------IV------TEIAGTTRDVIEASVTVCG 365 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~------------------------~v------s~~~gtT~d~~~~~~~~~g 365 (564)
+..++|+++|+.++|||||+.+|+..... .+ ....|.|.+.....+..++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 34588999999999999999998742210 01 1134677888777788889
Q ss_pred eeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCC-------hhHHHHHHHHHhccccCCCCC-CEEE
Q 008468 366 VPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWT-------SEDSELLNRIQSNKKSTESST-PMIL 437 (564)
Q Consensus 366 ~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s-------~~~~~~l~~l~~~~~~~~~~~-PvIv 437 (564)
..++++||||+.++... ....+..+|++|+|+|++++.. .+..+.+..+.. .++ ++|+
T Consensus 85 ~~i~liDtPGh~df~~~--------~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~------~gi~~iIV 150 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKN--------MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT------LGVKQMIC 150 (447)
T ss_pred EEEEEEECCCHHHHHHH--------HHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH------cCCCcEEE
Confidence 99999999998766433 2344789999999999987521 233344433322 245 4788
Q ss_pred EEecCCCCCCCc----ch--hhhh---cc--c----CCcEEEEeccCCCCHHH
Q 008468 438 VINKIDCAPSAS----NE--WNKV---GN--S----FNDHVFTCAVTGQGIQD 475 (564)
Q Consensus 438 V~NK~DL~~~~~----~~--~~~l---~~--~----~~~~i~iSAktg~GI~e 475 (564)
++||+|+.+... .. .+++ .. . ..+++++||++|+|+.+
T Consensus 151 ~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 151 CCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred EEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 999999862211 00 0111 11 1 14689999999999854
No 269
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.27 E-value=5.4e-11 Score=124.81 Aligned_cols=155 Identities=24% Similarity=0.290 Sum_probs=120.2
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcce-----e----------ccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHH
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAI-----V----------TEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVE 384 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~-----v----------s~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie 384 (564)
+|+|+-+..-|||||+..|+.+...+ + ....|.|.-.....+.|++..++++||||+-+|...+|
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVE 86 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVE 86 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhh
Confidence 69999999999999999999764322 1 11356676666777889999999999999999988877
Q ss_pred HhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hh----hc---
Q 008468 385 KIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NK----VG--- 456 (564)
Q Consensus 385 ~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~----l~--- 456 (564)
.. +.-.|.+++++|+..+..++..-.+++.+.. +.+-|+|+||+|....+..+. ++ +.
T Consensus 87 Rv--------l~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~------gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~ 152 (603)
T COG1217 87 RV--------LSMVDGVLLLVDASEGPMPQTRFVLKKALAL------GLKPIVVINKIDRPDARPDEVVDEVFDLFVELG 152 (603)
T ss_pred hh--------hhhcceEEEEEEcccCCCCchhhhHHHHHHc------CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 54 7789999999999999888887777765543 566789999999988766543 11 11
Q ss_pred ----ccCCcEEEEeccCC----------CCHHHHHHHHHHHhhccC
Q 008468 457 ----NSFNDHVFTCAVTG----------QGIQDLETAIMKIVGLHQ 488 (564)
Q Consensus 457 ----~~~~~~i~iSAktg----------~GI~eL~~~L~~~l~~~~ 488 (564)
+...+++..|++.| .++..||+.|.+.+..+.
T Consensus 153 A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 153 ATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred CChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 11247889999876 368889999999986544
No 270
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.26 E-value=4.7e-11 Score=125.20 Aligned_cols=160 Identities=13% Similarity=0.231 Sum_probs=106.0
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC----Ccc-----------eeccccC---eeEEEEE---EEEEEC---C--eeeEEE
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS----ERA-----------IVTEIAG---TTRDVIE---ASVTVC---G--VPVTLL 371 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~----~~~-----------~vs~~~g---tT~d~~~---~~~~~~---g--~~i~Li 371 (564)
.+.|+|+|+.|+|||||+|+|.+. +.+ .+++.+| ||.+... ..+.+. + .++.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 388999999999999999999998 665 7888899 8877766 444442 1 579999
Q ss_pred eCCCCCCchhHHHHhhhhh----------------------hhhhhh-cCcEEEEEe-cCC------CCCChhHHHHHHH
Q 008468 372 DTAGIRETDDIVEKIGVER----------------------SEAVAL-GADVIIMTV-SAV------DGWTSEDSELLNR 421 (564)
Q Consensus 372 DTpG~~~~~~~ie~~~i~~----------------------~~~~l~-~aD~vl~Vi-D~s------~~~s~~~~~~l~~ 421 (564)
||+|+......- ....++ ++..+. ++|+.|+|. |.+ ......+.+.+..
T Consensus 97 DcvG~~v~GalG-~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 97 DCVGYTVKGALG-YMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred ECCCcccCCCcc-ceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 999997432211 111222 455666 999999998 875 3334445566666
Q ss_pred HHhccccCCCCCCEEEEEecCCCCCCCcch-hhhhccc-CCcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 422 IQSNKKSTESSTPMILVINKIDCAPSASNE-WNKVGNS-FNDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 422 l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~-~~~l~~~-~~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
+... ++|+++|+||+|-....... .+++.+. ..+++++||..- .-+++...+.+.+.
T Consensus 176 Lk~~------~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~l-~~~DI~~il~~vL~ 234 (492)
T TIGR02836 176 LKEL------NKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVESM-RESDILSVLEEVLY 234 (492)
T ss_pred HHhc------CCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHHc-CHHHHHHHHHHHHh
Confidence 6543 79999999999943222221 1334333 257788998754 24455555555443
No 271
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.26 E-value=4.7e-11 Score=117.44 Aligned_cols=129 Identities=26% Similarity=0.304 Sum_probs=85.1
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceec-cccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHh--hhhhhh-hh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVT-EIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI--GVERSE-AV 394 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs-~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~--~i~~~~-~~ 394 (564)
++|+|+|.+|+||||++|.|+|.+..... .....|.........++|..+.++||||+.+.....+.. .+.++. ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 47999999999999999999998854332 234556666666778999999999999997643221111 122221 23
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCc
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~ 449 (564)
....|++|+|++.. .++..+...++.+...+... ....+|||+|..|......
T Consensus 81 ~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~-~~k~~ivvfT~~d~~~~~~ 133 (212)
T PF04548_consen 81 SPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEE-IWKHTIVVFTHADELEDDS 133 (212)
T ss_dssp TT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGG-GGGGEEEEEEEGGGGTTTT
T ss_pred cCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHH-HHhHhhHHhhhcccccccc
Confidence 46789999999998 77888888888777655432 2346899999998765543
No 272
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.24 E-value=4.2e-11 Score=125.93 Aligned_cols=154 Identities=21% Similarity=0.267 Sum_probs=110.5
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcce--------------eccccCeeEEEEEEEEEEC-----CeeeEEEeCCCCCCch
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAI--------------VTEIAGTTRDVIEASVTVC-----GVPVTLLDTAGIRETD 380 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~--------------vs~~~gtT~d~~~~~~~~~-----g~~i~LiDTpG~~~~~ 380 (564)
+..|+-+-.-|||||..+|+...... .....|.|.......+.+. .+.++|+||||+.+|.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 46788899999999999998753321 2234677776666555552 2667899999999886
Q ss_pred hHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhccc-
Q 008468 381 DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGNS- 458 (564)
Q Consensus 381 ~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~~- 458 (564)
-.+ .|+ +..|.+.++|+|++++...+...-...... .+.-+|-|+||+||+..+.... +++.+.
T Consensus 91 YEV-----SRS---LAACEGalLvVDAsQGveAQTlAN~YlAle------~~LeIiPViNKIDLP~Adpervk~eIe~~i 156 (603)
T COG0481 91 YEV-----SRS---LAACEGALLVVDASQGVEAQTLANVYLALE------NNLEIIPVLNKIDLPAADPERVKQEIEDII 156 (603)
T ss_pred EEe-----hhh---HhhCCCcEEEEECccchHHHHHHHHHHHHH------cCcEEEEeeecccCCCCCHHHHHHHHHHHh
Confidence 442 222 667889999999999877666533322222 3678999999999987765443 333321
Q ss_pred ---CCcEEEEeccCCCCHHHHHHHHHHHhhcc
Q 008468 459 ---FNDHVFTCAVTGQGIQDLETAIMKIVGLH 487 (564)
Q Consensus 459 ---~~~~i~iSAktg~GI~eL~~~L~~~l~~~ 487 (564)
-...+.+|||+|.||++++++|.+.+..+
T Consensus 157 Gid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P 188 (603)
T COG0481 157 GIDASDAVLVSAKTGIGIEDVLEAIVEKIPPP 188 (603)
T ss_pred CCCcchheeEecccCCCHHHHHHHHHhhCCCC
Confidence 13578999999999999999999988643
No 273
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.21 E-value=9.7e-11 Score=114.31 Aligned_cols=161 Identities=25% Similarity=0.307 Sum_probs=113.6
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGA 398 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~a 398 (564)
-+|+++|.|.||||||+..++.... ....|.+||...+.+.+.++|..+.++|.||+.+....-...| .+.....+.|
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~S-eaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRG-RQviavArta 140 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHS-EAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRG-RQVIAVARTA 140 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchh-hhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCC-ceEEEEeecc
Confidence 6899999999999999999998763 4578999999999999999999999999999976543321111 1122346789
Q ss_pred cEEEEEecCCCCCChhHHHHHHH--------------------------------------------HHhccccC-----
Q 008468 399 DVIIMTVSAVDGWTSEDSELLNR--------------------------------------------IQSNKKST----- 429 (564)
Q Consensus 399 D~vl~ViD~s~~~s~~~~~~l~~--------------------------------------------l~~~~~~~----- 429 (564)
|++++|+|++.... ..+.+.. ++..++..
T Consensus 141 DlilMvLDatk~e~--qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl 218 (364)
T KOG1486|consen 141 DLILMVLDATKSED--QREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVL 218 (364)
T ss_pred cEEEEEecCCcchh--HHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEE
Confidence 99999999986432 1112211 11110000
Q ss_pred -----------------CCCCCEEEEEecCCCCCCCcchhhhhcccCCcEEEEeccCCCCHHHHHHHHHHHhhc
Q 008468 430 -----------------ESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 430 -----------------~~~~PvIvV~NK~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
..-.+++.|.||+|..+-.+.. .++. .+..+-+||.-.-|++.|++.|++.+..
T Consensus 219 ~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~eevd--rlAr-~PnsvViSC~m~lnld~lle~iWe~l~L 289 (364)
T KOG1486|consen 219 FREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIEEVD--RLAR-QPNSVVISCNMKLNLDRLLERIWEELNL 289 (364)
T ss_pred EecCCChHHHHHHHhccceEEEEEEEeeccceecHHHHH--HHhc-CCCcEEEEeccccCHHHHHHHHHHHhce
Confidence 1124678888999876543332 3332 3567889999999999999999998753
No 274
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.21 E-value=4.6e-11 Score=106.90 Aligned_cols=154 Identities=18% Similarity=0.176 Sum_probs=110.8
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC-eeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG-VPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g-~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
+..+||.++|--|+|||||+..|.+++..-+.+. ..+....+.++| ..+++||..|++.....+. .|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT----~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWs--------NY 82 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPT----NGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWS--------NY 82 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhcccc----CCcceEEEeecCcEEEEEEecCCccccchhhh--------hh
Confidence 5669999999999999999999999885433332 334455566666 7899999999987666654 56
Q ss_pred hhcCcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhh-------hcccCCcEEEEe
Q 008468 395 ALGADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNK-------VGNSFNDHVFTC 466 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~-------l~~~~~~~i~iS 466 (564)
+.+.|.+|||+|.++.-.+++. +.+-.+.... +...+|+.+..||.|+......+... +......+-++|
T Consensus 83 yenvd~lIyVIDS~D~krfeE~~~el~ELleee--Kl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~cs 160 (185)
T KOG0074|consen 83 YENVDGLIYVIDSTDEKRFEEISEELVELLEEE--KLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECS 160 (185)
T ss_pred hhccceEEEEEeCCchHhHHHHHHHHHHHhhhh--hhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCc
Confidence 8999999999998775444443 2233333321 23468999999999998766554311 122223467899
Q ss_pred ccCCCCHHHHHHHHHHH
Q 008468 467 AVTGQGIQDLETAIMKI 483 (564)
Q Consensus 467 Aktg~GI~eL~~~L~~~ 483 (564)
|.++.|+.+=.+++...
T Consensus 161 als~eg~~dg~~wv~sn 177 (185)
T KOG0074|consen 161 ALSLEGSTDGSDWVQSN 177 (185)
T ss_pred cccccCccCcchhhhcC
Confidence 99999999888887654
No 275
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.21 E-value=4.6e-11 Score=125.48 Aligned_cols=89 Identities=31% Similarity=0.363 Sum_probs=72.5
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe-----------------eeEEEeCCCCCCch
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV-----------------PVTLLDTAGIRETD 380 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~-----------------~i~LiDTpG~~~~~ 380 (564)
+++|+|+|.||||||||+|+|++.. +.++++|+||++...+.+.+.+. ++.++||||+....
T Consensus 2 ~~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 2 GLKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 3789999999999999999999988 67899999999998888777652 48999999998644
Q ss_pred hHHHHhhhhhhhhhhhcCcEEEEEecCC
Q 008468 381 DIVEKIGVERSEAVALGADVIIMTVSAV 408 (564)
Q Consensus 381 ~~ie~~~i~~~~~~l~~aD~vl~ViD~s 408 (564)
...+.++ .+....++++|++++|+|+.
T Consensus 81 ~~g~glg-~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLG-NQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHH-HHHHHHHHhCCEEEEEEeCC
Confidence 3333333 34455689999999999985
No 276
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=7.5e-11 Score=123.06 Aligned_cols=147 Identities=20% Similarity=0.231 Sum_probs=101.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcce------------------------------eccccCeeEEEEEEEEEECCe
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAI------------------------------VTEIAGTTRDVIEASVTVCGV 366 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~------------------------------vs~~~gtT~d~~~~~~~~~g~ 366 (564)
..++++++|+.++|||||+-+|+.+-..+ .....|.|.+.....+..+..
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 34899999999999999999987532111 122467888988888888999
Q ss_pred eeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCC-------CChhHHHHHHHHHhccccCCCCCCEEEEE
Q 008468 367 PVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDG-------WTSEDSELLNRIQSNKKSTESSTPMILVI 439 (564)
Q Consensus 367 ~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~-------~s~~~~~~l~~l~~~~~~~~~~~PvIvV~ 439 (564)
.++|+|+||++++-.. ...-..+||+.|+|+|+..+ ...+..+.+- +..... -..+||++
T Consensus 86 ~~tIiDaPGHrdFvkn--------mItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~-La~tlG----i~~lIVav 152 (428)
T COG5256 86 NFTIIDAPGHRDFVKN--------MITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAF-LARTLG----IKQLIVAV 152 (428)
T ss_pred eEEEeeCCchHHHHHH--------hhcchhhccEEEEEEECCCCccccccccCCchhHHHH-HHHhcC----CceEEEEE
Confidence 9999999998876322 12336789999999999987 2333333222 222111 23589999
Q ss_pred ecCCCCCCCcchhhh-------hcc------cCCcEEEEeccCCCCHHHH
Q 008468 440 NKIDCAPSASNEWNK-------VGN------SFNDHVFTCAVTGQGIQDL 476 (564)
Q Consensus 440 NK~DL~~~~~~~~~~-------l~~------~~~~~i~iSAktg~GI~eL 476 (564)
||+|+.+-++...++ +.+ ...++++||+.+|+|+.+-
T Consensus 153 NKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 153 NKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred EcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 999998743322211 221 1246999999999998764
No 277
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.20 E-value=3.6e-11 Score=122.28 Aligned_cols=86 Identities=29% Similarity=0.319 Sum_probs=70.2
Q ss_pred EEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe-----------------eeEEEeCCCCCCchhHH
Q 008468 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV-----------------PVTLLDTAGIRETDDIV 383 (564)
Q Consensus 321 I~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~-----------------~i~LiDTpG~~~~~~~i 383 (564)
|+|+|.||||||||+|+|++.+. .++++|+||++...+.+.+.+. .+.++||||+.......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 58999999999999999999986 7899999999998888887654 48999999998654443
Q ss_pred HHhhhhhhhhhhhcCcEEEEEecCC
Q 008468 384 EKIGVERSEAVALGADVIIMTVSAV 408 (564)
Q Consensus 384 e~~~i~~~~~~l~~aD~vl~ViD~s 408 (564)
+.++ .+....++.+|++++|+|+.
T Consensus 80 ~glg-~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 80 EGLG-NKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hHHH-HHHHHHHHhCCEEEEEEeCc
Confidence 4443 23445678999999999975
No 278
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=9.9e-11 Score=121.40 Aligned_cols=89 Identities=34% Similarity=0.379 Sum_probs=69.7
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC------------------eeeEEEeCCCCCCc
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG------------------VPVTLLDTAGIRET 379 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g------------------~~i~LiDTpG~~~~ 379 (564)
.++++|||.||||||||+|+++... +...+||++|.+...+.+.+.. .++.++|.||+...
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 4789999999999999999999998 6679999999998777765432 24789999999754
Q ss_pred hhHHHHhhhhhhhhhhhcCcEEEEEecCC
Q 008468 380 DDIVEKIGVERSEAVALGADVIIMTVSAV 408 (564)
Q Consensus 380 ~~~ie~~~i~~~~~~l~~aD~vl~ViD~s 408 (564)
...-+.+|-+ -..-++++|++++|+|+.
T Consensus 81 As~GeGLGNk-FL~~IRevdaI~hVVr~f 108 (372)
T COG0012 81 ASKGEGLGNK-FLDNIREVDAIIHVVRCF 108 (372)
T ss_pred cccCCCcchH-HHHhhhhcCeEEEEEEec
Confidence 4333333322 234589999999999987
No 279
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.19 E-value=8e-11 Score=135.40 Aligned_cols=115 Identities=22% Similarity=0.241 Sum_probs=82.8
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcce---------ecc------ccCeeEEEEEE----EEEECCeeeEEEeCCCCCCc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAI---------VTE------IAGTTRDVIEA----SVTVCGVPVTLLDTAGIRET 379 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~---------vs~------~~gtT~d~~~~----~~~~~g~~i~LiDTpG~~~~ 379 (564)
.+|+|+|+.++|||||+++|+.....+ ..+ ..++|.+.... .+.+++..+++|||||+.++
T Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f 99 (720)
T TIGR00490 20 RNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDF 99 (720)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcccc
Confidence 589999999999999999997531110 011 13444443221 24556788999999999876
Q ss_pred hhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCC
Q 008468 380 DDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447 (564)
Q Consensus 380 ~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~ 447 (564)
... ...++..+|++++|+|+..+...++...|+.+... +.|+++|+||+|+...
T Consensus 100 ~~~--------~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~------~~p~ivviNKiD~~~~ 153 (720)
T TIGR00490 100 GGD--------VTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE------NVKPVLFINKVDRLIN 153 (720)
T ss_pred HHH--------HHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc------CCCEEEEEEChhcccc
Confidence 533 23458999999999999988777777777665432 5788999999998754
No 280
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=8.4e-11 Score=105.57 Aligned_cols=155 Identities=17% Similarity=0.172 Sum_probs=110.9
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhc
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALG 397 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~ 397 (564)
..+|.++|--|+||+|++-++--.+. ++..|.. ......+.+++.++.+||..|....... .+.|+.+
T Consensus 18 e~rililgldGaGkttIlyrlqvgev--vttkPti--gfnve~v~yKNLk~~vwdLggqtSirPy--------WRcYy~d 85 (182)
T KOG0072|consen 18 EMRILILGLDGAGKTTILYRLQVGEV--VTTKPTI--GFNVETVPYKNLKFQVWDLGGQTSIRPY--------WRCYYAD 85 (182)
T ss_pred ceEEEEeeccCCCeeEEEEEcccCcc--cccCCCC--CcCccccccccccceeeEccCcccccHH--------HHHHhcc
Confidence 47899999999999999988876653 3444433 3344556678999999999998766555 3577999
Q ss_pred CcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-------hhhcccCCcEEEEeccC
Q 008468 398 ADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-------NKVGNSFNDHVFTCAVT 469 (564)
Q Consensus 398 aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-------~~l~~~~~~~i~iSAkt 469 (564)
.|.+|+|+|.++....... ..+..++.+. .-.+..+++++||.|........+ +++.+....+|..||.+
T Consensus 86 t~avIyVVDssd~dris~a~~el~~mL~E~--eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~k 163 (182)
T KOG0072|consen 86 TDAVIYVVDSSDRDRISIAGVELYSMLQEE--ELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVK 163 (182)
T ss_pred cceEEEEEeccchhhhhhhHHHHHHHhccH--hhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeecccc
Confidence 9999999999885433221 1122222221 123466899999999876544332 34555556789999999
Q ss_pred CCCHHHHHHHHHHHhhc
Q 008468 470 GQGIQDLETAIMKIVGL 486 (564)
Q Consensus 470 g~GI~eL~~~L~~~l~~ 486 (564)
|.|+++.++++.+.+..
T Consensus 164 g~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 164 GEGLDPAMDWLQRPLKS 180 (182)
T ss_pred ccCCcHHHHHHHHHHhc
Confidence 99999999999987753
No 281
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.16 E-value=1.3e-10 Score=109.10 Aligned_cols=113 Identities=29% Similarity=0.304 Sum_probs=73.1
Q ss_pred EEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEE-------------------------------------------
Q 008468 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVI------------------------------------------- 357 (564)
Q Consensus 321 I~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~------------------------------------------- 357 (564)
|+|+|..++|||||+|+|+|.+...++..+.|..-..
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 7899999999999999999987543333322211100
Q ss_pred -----------EEEE-EECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhc
Q 008468 358 -----------EASV-TVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSN 425 (564)
Q Consensus 358 -----------~~~~-~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~ 425 (564)
.... ......+.|+||||+.+...... +.+..++..+|++|+|.++++..+..+...+......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~----~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~ 156 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT----EITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP 156 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS----HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhH----HHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC
Confidence 0000 00123388999999975332211 3345668999999999999998777777666665543
Q ss_pred cccCCCCCCEEEEEecC
Q 008468 426 KKSTESSTPMILVINKI 442 (564)
Q Consensus 426 ~~~~~~~~PvIvV~NK~ 442 (564)
. ...+++|.||+
T Consensus 157 ~-----~~~~i~V~nk~ 168 (168)
T PF00350_consen 157 D-----KSRTIFVLNKA 168 (168)
T ss_dssp T-----CSSEEEEEE-G
T ss_pred C-----CCeEEEEEcCC
Confidence 2 34599999995
No 282
>PRK13768 GTPase; Provisional
Probab=99.15 E-value=2.9e-10 Score=114.84 Aligned_cols=118 Identities=23% Similarity=0.164 Sum_probs=73.7
Q ss_pred eeEEEeCCCCCCchhHHHHhhhhhhhhhhhc--CcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCC
Q 008468 367 PVTLLDTAGIRETDDIVEKIGVERSEAVALG--ADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDC 444 (564)
Q Consensus 367 ~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~--aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL 444 (564)
.+.+|||||..+........ ......+.. ++++++|+|++......+......+..... ...++|+++|+||+|+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~--~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~-~~~~~~~i~v~nK~D~ 174 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESG--RKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQ-LRLGLPQIPVLNKADL 174 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHH--HHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHH-HHcCCCEEEEEEhHhh
Confidence 58999999986543211110 011112222 899999999987666655433322210000 0136899999999999
Q ss_pred CCCCcchh--hhhc----------------------------c--cCCcEEEEeccCCCCHHHHHHHHHHHhhcc
Q 008468 445 APSASNEW--NKVG----------------------------N--SFNDHVFTCAVTGQGIQDLETAIMKIVGLH 487 (564)
Q Consensus 445 ~~~~~~~~--~~l~----------------------------~--~~~~~i~iSAktg~GI~eL~~~L~~~l~~~ 487 (564)
........ +.+. + ...+++++|++++.|+++|+++|.+.+..+
T Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~ 249 (253)
T PRK13768 175 LSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGG 249 (253)
T ss_pred cCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCC
Confidence 86644322 1111 1 124789999999999999999999987543
No 283
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.15 E-value=2e-10 Score=114.04 Aligned_cols=161 Identities=16% Similarity=0.141 Sum_probs=96.4
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEE-ECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVT-VCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGA 398 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~-~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~a 398 (564)
||+++|+.++||||+.+.++++-.+.-+.+-+.|.+.....+. .+...+.+||.||+..+.+.. -.......++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~---~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY---FNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT---HTCCHHHHHCTE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc---ccccHHHHHhcc
Confidence 7999999999999999999987644334455666666666665 356799999999997654321 011123457999
Q ss_pred cEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh------h----hhcccC---CcEEEE
Q 008468 399 DVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW------N----KVGNSF---NDHVFT 465 (564)
Q Consensus 399 D~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~------~----~l~~~~---~~~i~i 465 (564)
+++|||+|+.......+...+...........++..+.+.++|+|+........ + .+.+.. ..++.+
T Consensus 78 ~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~T 157 (232)
T PF04670_consen 78 GVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLT 157 (232)
T ss_dssp SEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE
T ss_pred CEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEec
Confidence 999999999865556666555554433333456888999999999976543322 1 111122 457778
Q ss_pred eccCCCCHHHHHHHHHHHh
Q 008468 466 CAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 466 SAktg~GI~eL~~~L~~~l 484 (564)
|.-.. .+-+.+..+.+.+
T Consensus 158 SI~D~-Sly~A~S~Ivq~L 175 (232)
T PF04670_consen 158 SIWDE-SLYEAWSKIVQKL 175 (232)
T ss_dssp -TTST-HHHHHHHHHHHTT
T ss_pred cCcCc-HHHHHHHHHHHHH
Confidence 88774 4444444444433
No 284
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.14 E-value=4.1e-10 Score=131.89 Aligned_cols=140 Identities=22% Similarity=0.305 Sum_probs=98.9
Q ss_pred CChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC------------------eeeEEEeCCCCCCchhHHHHhhhhh
Q 008468 329 VGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG------------------VPVTLLDTAGIRETDDIVEKIGVER 390 (564)
Q Consensus 329 vGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g------------------~~i~LiDTpG~~~~~~~ie~~~i~~ 390 (564)
++||||+.+|.+...+ -....|.|.+.-...+.++. ..+.||||||+..+....
T Consensus 472 ~~KTtLLD~iR~t~v~-~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr------- 543 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVA-KKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLR------- 543 (1049)
T ss_pred cccccHHHHHhCCCcc-cccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHH-------
Confidence 4699999999998764 35667788877666665542 127999999986654332
Q ss_pred hhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcc--------------h--hhh
Q 008468 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN--------------E--WNK 454 (564)
Q Consensus 391 ~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~--------------~--~~~ 454 (564)
...+..+|++++|+|++++...++.+.+..+... ++|+++|+||+|+.+.... . .++
T Consensus 544 -~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~------~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~e 616 (1049)
T PRK14845 544 -KRGGSLADLAVLVVDINEGFKPQTIEAINILRQY------KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTE 616 (1049)
T ss_pred -HhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc------CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHH
Confidence 1236779999999999988777777666655432 5799999999999643210 0 001
Q ss_pred -----------hcc---------------cCCcEEEEeccCCCCHHHHHHHHHHH
Q 008468 455 -----------VGN---------------SFNDHVFTCAVTGQGIQDLETAIMKI 483 (564)
Q Consensus 455 -----------l~~---------------~~~~~i~iSAktg~GI~eL~~~L~~~ 483 (564)
+.+ ...+++++||++|+|+++|++.|...
T Consensus 617 l~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 617 LEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred HHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 111 12468999999999999999988643
No 285
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.13 E-value=5.8e-10 Score=122.97 Aligned_cols=131 Identities=22% Similarity=0.260 Sum_probs=87.3
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcCCcceeccc-cCeeEEEEEEEEEECCeeeEEEeCCCCCCchh--HHHHhhhhhh
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEI-AGTTRDVIEASVTVCGVPVTLLDTAGIRETDD--IVEKIGVERS 391 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~-~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~--~ie~~~i~~~ 391 (564)
+...++|+|+|.+||||||++|.|+++....++.. ++||+ .......++|..+.++||||+.++.. ..........
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHH
Confidence 34457899999999999999999999886556655 45554 44555567899999999999987531 1111111112
Q ss_pred hhhhh--cCcEEEEEecCCCCCC-hhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCC
Q 008468 392 EAVAL--GADVIIMTVSAVDGWT-SEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447 (564)
Q Consensus 392 ~~~l~--~aD~vl~ViD~s~~~s-~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~ 447 (564)
..++. .+|++|+|........ .++...++.+...+.. .....+|||+|..|..+.
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~-~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGP-SIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCH-HhHcCEEEEEeCCccCCC
Confidence 22333 5899999987753322 2455566666554432 233568999999998863
No 286
>PTZ00416 elongation factor 2; Provisional
Probab=99.11 E-value=2.8e-10 Score=132.72 Aligned_cols=113 Identities=21% Similarity=0.254 Sum_probs=84.3
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceecccc---------------CeeEEEEEEEEEEC----------CeeeEEEeC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIA---------------GTTRDVIEASVTVC----------GVPVTLLDT 373 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~---------------gtT~d~~~~~~~~~----------g~~i~LiDT 373 (564)
-+|+|+|+.++|||||+++|+.....+..... ++|.+.....+.++ +..++|+||
T Consensus 20 rni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDt 99 (836)
T PTZ00416 20 RNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDS 99 (836)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcC
Confidence 48999999999999999999985543322222 23333322333443 567999999
Q ss_pred CCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCC
Q 008468 374 AGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445 (564)
Q Consensus 374 pG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~ 445 (564)
||+.++... ....+..+|++|+|+|+..+...++..+|+.+... ++|+|+++||+|+.
T Consensus 100 PG~~~f~~~--------~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~------~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 100 PGHVDFSSE--------VTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE------RIRPVLFINKVDRA 157 (836)
T ss_pred CCHHhHHHH--------HHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc------CCCEEEEEEChhhh
Confidence 999775433 23457899999999999999888888888876653 57999999999997
No 287
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.11 E-value=4.2e-10 Score=131.45 Aligned_cols=113 Identities=20% Similarity=0.289 Sum_probs=84.5
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceecccc---------------CeeEEEEEEEEEE----------------CCee
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIA---------------GTTRDVIEASVTV----------------CGVP 367 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~---------------gtT~d~~~~~~~~----------------~g~~ 367 (564)
-+|+|+|+.++|||||+++|+.....+..... +.|.+.....+.+ ++..
T Consensus 20 rni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
T PLN00116 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYL 99 (843)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceE
Confidence 47999999999999999999876543222222 2333332333333 2567
Q ss_pred eEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCC
Q 008468 368 VTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445 (564)
Q Consensus 368 i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~ 445 (564)
++|+||||+.++.... ...+..+|++|+|+|+..+...++...|+.+... ++|+|+++||+|+.
T Consensus 100 inliDtPGh~dF~~e~--------~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~------~~p~i~~iNK~D~~ 163 (843)
T PLN00116 100 INLIDSPGHVDFSSEV--------TAALRITDGALVVVDCIEGVCVQTETVLRQALGE------RIRPVLTVNKMDRC 163 (843)
T ss_pred EEEECCCCHHHHHHHH--------HHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC------CCCEEEEEECCccc
Confidence 8999999997764432 2447889999999999999888888888876653 68999999999987
No 288
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1.3e-09 Score=123.37 Aligned_cols=119 Identities=23% Similarity=0.228 Sum_probs=97.0
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcce-----------ec------cccCeeEEEEEEEEEECC-eeeEEEeCCCCCCch
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAI-----------VT------EIAGTTRDVIEASVTVCG-VPVTLLDTAGIRETD 380 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~-----------vs------~~~gtT~d~~~~~~~~~g-~~i~LiDTpG~~~~~ 380 (564)
-+|+|+|+..+|||||..+|+-....+ +. ...|.|......++.+.+ ..++|+||||+.+|.
T Consensus 11 RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDFt 90 (697)
T COG0480 11 RNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDFT 90 (697)
T ss_pred eEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccccH
Confidence 479999999999999999998643221 11 124667777788889996 999999999999998
Q ss_pred hHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcch
Q 008468 381 DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451 (564)
Q Consensus 381 ~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~ 451 (564)
..++ ..++-+|++++|+|+..+...+....|++.... ++|.++++||+|....+...
T Consensus 91 ~EV~--------rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~------~vp~i~fiNKmDR~~a~~~~ 147 (697)
T COG0480 91 IEVE--------RSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY------GVPRILFVNKMDRLGADFYL 147 (697)
T ss_pred HHHH--------HHHHhhcceEEEEECCCCeeecHHHHHHHHhhc------CCCeEEEEECccccccChhh
Confidence 7654 337889999999999999999999999987654 78999999999998765544
No 289
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.09 E-value=2.2e-09 Score=107.30 Aligned_cols=77 Identities=19% Similarity=0.215 Sum_probs=51.6
Q ss_pred eeeEEEeCCCCCCc-----hhHHHHhhhhhhhhhhh-cCcEEEEEecCCCCCChhH-HHHHHHHHhccccCCCCCCEEEE
Q 008468 366 VPVTLLDTAGIRET-----DDIVEKIGVERSEAVAL-GADVIIMTVSAVDGWTSED-SELLNRIQSNKKSTESSTPMILV 438 (564)
Q Consensus 366 ~~i~LiDTpG~~~~-----~~~ie~~~i~~~~~~l~-~aD~vl~ViD~s~~~s~~~-~~~l~~l~~~~~~~~~~~PvIvV 438 (564)
..++|+||||+... .......-.+....|++ ..+++++|+|+.......+ .++.+.+.. .+.|+++|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~------~~~rti~V 198 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP------QGERTIGV 198 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH------cCCcEEEE
Confidence 44889999999632 12222222334566777 4569999999987766655 355555433 36799999
Q ss_pred EecCCCCCCC
Q 008468 439 INKIDCAPSA 448 (564)
Q Consensus 439 ~NK~DL~~~~ 448 (564)
+||+|.....
T Consensus 199 iTK~D~~~~~ 208 (240)
T smart00053 199 ITKLDLMDEG 208 (240)
T ss_pred EECCCCCCcc
Confidence 9999987643
No 290
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.08 E-value=5.7e-10 Score=128.67 Aligned_cols=114 Identities=23% Similarity=0.269 Sum_probs=82.1
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccc---------------cCeeEEEEEEEEEE----CCeeeEEEeCCCCCCc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEI---------------AGTTRDVIEASVTV----CGVPVTLLDTAGIRET 379 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~---------------~gtT~d~~~~~~~~----~g~~i~LiDTpG~~~~ 379 (564)
-+|+|+|+.++|||||+++|+.....+.... .++|.+.....+.+ ++..++|+||||+.++
T Consensus 21 Rni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df 100 (731)
T PRK07560 21 RNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDF 100 (731)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccCh
Confidence 4699999999999999999986543321111 22333333333333 4677899999999886
Q ss_pred hhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCC
Q 008468 380 DDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446 (564)
Q Consensus 380 ~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~ 446 (564)
... ....+..+|++++|+|+..+...++...|...... +.|.|+++||+|+..
T Consensus 101 ~~~--------~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~------~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 101 GGD--------VTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE------RVKPVLFINKVDRLI 153 (731)
T ss_pred HHH--------HHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc------CCCeEEEEECchhhc
Confidence 433 23457889999999999998887777777765443 468899999999864
No 291
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.07 E-value=3.7e-10 Score=99.37 Aligned_cols=137 Identities=23% Similarity=0.203 Sum_probs=91.1
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCc-hhHHHHhhhhhhhhhhhcC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRET-DDIVEKIGVERSEAVALGA 398 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~-~~~ie~~~i~~~~~~l~~a 398 (564)
|++++|..|+|||||++.|-|++.. +.. |. -+++++. ..+||||-.-. ...... ......++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l----ykK-TQ-----Ave~~d~--~~IDTPGEy~~~~~~Y~a-----L~tt~~da 65 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL----YKK-TQ-----AVEFNDK--GDIDTPGEYFEHPRWYHA-----LITTLQDA 65 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh----hcc-cc-----eeeccCc--cccCCchhhhhhhHHHHH-----HHHHhhcc
Confidence 6899999999999999999998732 111 11 1222211 24899996422 111111 12336789
Q ss_pred cEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcccC-CcEEEEeccCCCCHHH
Q 008468 399 DVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGNSF-NDHVFTCAVTGQGIQD 475 (564)
Q Consensus 399 D~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~~~-~~~i~iSAktg~GI~e 475 (564)
|++++|-.++++.+.-...+.. ...+|+|-|++|.||.+....+. +.+.+.. .++|.+|+.+..|+++
T Consensus 66 dvi~~v~~and~~s~f~p~f~~---------~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~ 136 (148)
T COG4917 66 DVIIYVHAANDPESRFPPGFLD---------IGVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEE 136 (148)
T ss_pred ceeeeeecccCccccCCccccc---------ccccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHH
Confidence 9999999999876543322211 12457999999999996554443 2333322 5789999999999999
Q ss_pred HHHHHHH
Q 008468 476 LETAIMK 482 (564)
Q Consensus 476 L~~~L~~ 482 (564)
|++.|..
T Consensus 137 l~~~L~~ 143 (148)
T COG4917 137 LVDYLAS 143 (148)
T ss_pred HHHHHHh
Confidence 9998865
No 292
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.07 E-value=1.4e-10 Score=110.62 Aligned_cols=120 Identities=19% Similarity=0.263 Sum_probs=69.5
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEE---CCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTV---CGVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~---~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
-.|+|+|+.|+|||+|+..|..... +....... . .....+ .+..+.++|+||+.......-. ...+.
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~--~~T~tS~e--~-n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~-----~~~~~ 73 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKT--VPTVTSME--N-NIAYNVNNSKGKKLRLVDIPGHPRLRSKLLD-----ELKYL 73 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS-----B---SS--E-EEECCGSSTCGTCECEEEETT-HCCCHHHHH-----HHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCc--CCeecccc--C-CceEEeecCCCCEEEEEECCCcHHHHHHHHH-----hhhch
Confidence 4699999999999999999998753 12221111 1 111222 4567999999999765443211 11247
Q ss_pred hcCcEEEEEecCCCCC-C-hhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCC
Q 008468 396 LGADVIIMTVSAVDGW-T-SEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~-s-~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~ 448 (564)
..+.+||||+|++... . .+..+.+..++..........|+++++||.|+....
T Consensus 74 ~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 74 SNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp GGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred hhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 7899999999987411 1 112244444444333335678999999999987543
No 293
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=5.2e-10 Score=105.05 Aligned_cols=155 Identities=12% Similarity=0.124 Sum_probs=109.1
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEE---CCeeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTV---CGVPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~---~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
+++++++|+.|.||||+.++.+..++. ..++.|+.-.....+.. +...+..|||+|++.+..... .+
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe--~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrd--------gy 79 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFE--KTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRD--------GY 79 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccce--ecccCcceeEEeeeeeecccCcEEEEeeecccceeeccccc--------cc
Confidence 589999999999999999999988764 44444433222222222 236778899999976543322 23
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcccCCcEEEEeccCCC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGNSFNDHVFTCAVTGQ 471 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~~~~~~i~iSAktg~ 471 (564)
+-++.+.++++|++...+..+...|.+ +... ..++|+++++||.|......... .-.......++++||+++.
T Consensus 80 yI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv----~~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn~ 155 (216)
T KOG0096|consen 80 YIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRV----RENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNY 155 (216)
T ss_pred EEecceeEEEeeeeehhhhhcchHHHHHHHHH----hcCCCeeeeccceeccccccccccceeeecccceeEEeeccccc
Confidence 566789999999998888777655543 3333 34689999999999765441111 1112234579999999999
Q ss_pred CHHHHHHHHHHHhhc
Q 008468 472 GIQDLETAIMKIVGL 486 (564)
Q Consensus 472 GI~eL~~~L~~~l~~ 486 (564)
|.+.-|-++.+.+..
T Consensus 156 NfekPFl~LarKl~G 170 (216)
T KOG0096|consen 156 NFERPFLWLARKLTG 170 (216)
T ss_pred ccccchHHHhhhhcC
Confidence 999999999998753
No 294
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.04 E-value=4.7e-10 Score=114.50 Aligned_cols=144 Identities=19% Similarity=0.243 Sum_probs=104.0
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCccee--------------------------------ccccCeeEEEEEEEEEE
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIV--------------------------------TEIAGTTRDVIEASVTV 363 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~v--------------------------------s~~~gtT~d~~~~~~~~ 363 (564)
+..++.+-+|...-|||||+-+|+.+..++. ....|.|.|+....+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 3458999999999999999999987654321 11246788998888888
Q ss_pred CCeeeEEEeCCCCCCch-hHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHH--HHHHHHhccccCCCCCCEEEEEe
Q 008468 364 CGVPVTLLDTAGIRETD-DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSE--LLNRIQSNKKSTESSTPMILVIN 440 (564)
Q Consensus 364 ~g~~i~LiDTpG~~~~~-~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~--~l~~l~~~~~~~~~~~PvIvV~N 440 (564)
+..++++.||||+.++. ++. .-...||+.|+++|+..+...+..+ .+..++.. +.+++++|
T Consensus 84 ~KRkFIiADTPGHeQYTRNMa---------TGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGI-------rhvvvAVN 147 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMA---------TGASTADLAILLVDARKGVLEQTRRHSFIASLLGI-------RHVVVAVN 147 (431)
T ss_pred ccceEEEecCCcHHHHhhhhh---------cccccccEEEEEEecchhhHHHhHHHHHHHHHhCC-------cEEEEEEe
Confidence 89999999999997653 321 1256789999999998887666553 23333322 35899999
Q ss_pred cCCCCCCCcchhhhh-------cc----cCCcEEEEeccCCCCHHH
Q 008468 441 KIDCAPSASNEWNKV-------GN----SFNDHVFTCAVTGQGIQD 475 (564)
Q Consensus 441 K~DL~~~~~~~~~~l-------~~----~~~~~i~iSAktg~GI~e 475 (564)
|+||.+-.+...+++ .. ....++++||..|+|+..
T Consensus 148 KmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 148 KMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred eecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 999997665433222 11 224689999999998753
No 295
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.04 E-value=4.6e-09 Score=105.88 Aligned_cols=149 Identities=26% Similarity=0.331 Sum_probs=93.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC------cce--e---ccccCe------------eE--EEEEEEE----------
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE------RAI--V---TEIAGT------------TR--DVIEASV---------- 361 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~------~~~--v---s~~~gt------------T~--d~~~~~~---------- 361 (564)
+...|+|.|.||+|||||+..|...- .+. + +++.|= +. ......+
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 44789999999999999999987421 111 1 111110 00 1111111
Q ss_pred ----------EECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCC
Q 008468 362 ----------TVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTE 430 (564)
Q Consensus 362 ----------~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~ 430 (564)
+--|+.++|+.|.|..+.+-.+ ...+|.+++|.=+.-+ ++.+.++. ++
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev~I-----------~~~aDt~~~v~~pg~G---D~~Q~iK~Gim------- 188 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSEVDI-----------ANMADTFLVVMIPGAG---DDLQGIKAGIM------- 188 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcchhHH-----------hhhcceEEEEecCCCC---cHHHHHHhhhh-------
Confidence 1124668999999998765443 4568999998765544 33333333 22
Q ss_pred CCCCEEEEEecCCCCCCCcchh------hhh------cccCCcEEEEeccCCCCHHHHHHHHHHHhhcc
Q 008468 431 SSTPMILVINKIDCAPSASNEW------NKV------GNSFNDHVFTCAVTGQGIQDLETAIMKIVGLH 487 (564)
Q Consensus 431 ~~~PvIvV~NK~DL~~~~~~~~------~~l------~~~~~~~i~iSAktg~GI~eL~~~L~~~l~~~ 487 (564)
+.--|+|+||.|+........ +.. ..+.++++.+||.+|+|+++|++.+.+.....
T Consensus 189 -EiaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 189 -EIADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL 256 (323)
T ss_pred -hhhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence 234589999999654422111 001 11347899999999999999999999987643
No 296
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.02 E-value=8.1e-10 Score=105.15 Aligned_cols=59 Identities=37% Similarity=0.626 Sum_probs=50.6
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCC
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGI 376 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~ 376 (564)
....++|+++|.||||||||+|+|++...+.++..||+|++.....+ +..+.++||||+
T Consensus 114 ~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 114 IKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred cccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 34568999999999999999999999988889999999998765543 346899999995
No 297
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.01 E-value=1.6e-09 Score=113.96 Aligned_cols=157 Identities=24% Similarity=0.212 Sum_probs=87.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC----CcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS----ERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~----~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~ 392 (564)
.+++|+|+|.+|+|||||+|+|.|- +.+.......||.+...+.. .+-..+.+||.||++......+.+. + .
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl-~--~ 109 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYL-K--E 109 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHH-H--H
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHH-H--H
Confidence 3489999999999999999999762 11222222345555444432 2334689999999975433322221 1 1
Q ss_pred hhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCC--CC-----Ccchh------------h
Q 008468 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA--PS-----ASNEW------------N 453 (564)
Q Consensus 393 ~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~--~~-----~~~~~------------~ 453 (564)
..+...|++|++.+ ..++..+..+.+.+... ++|+.+|-+|+|.. .. ..... +
T Consensus 110 ~~~~~yD~fiii~s--~rf~~ndv~La~~i~~~------gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~ 181 (376)
T PF05049_consen 110 VKFYRYDFFIIISS--ERFTENDVQLAKEIQRM------GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLE 181 (376)
T ss_dssp TTGGG-SEEEEEES--SS--HHHHHHHHHHHHT------T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHH
T ss_pred ccccccCEEEEEeC--CCCchhhHHHHHHHHHc------CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHH
Confidence 22677899888765 45677777877777765 78999999999951 11 01110 1
Q ss_pred hhcc---cCCcEEEEeccCC--CCHHHHHHHHHHHhh
Q 008468 454 KVGN---SFNDHVFTCAVTG--QGIQDLETAIMKIVG 485 (564)
Q Consensus 454 ~l~~---~~~~~i~iSAktg--~GI~eL~~~L~~~l~ 485 (564)
.+.+ ..+++|-||+.+- ..+..|.+.|.+-+.
T Consensus 182 ~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp 218 (376)
T PF05049_consen 182 NLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLP 218 (376)
T ss_dssp HHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred HHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence 1222 1257889998754 568888888887653
No 298
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=1.2e-09 Score=119.64 Aligned_cols=154 Identities=23% Similarity=0.321 Sum_probs=110.0
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEEC------------------CeeeEEEeCCCC
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC------------------GVPVTLLDTAGI 376 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~------------------g~~i~LiDTpG~ 376 (564)
+|.++ ++|+|+...|||-|+..+-+.++. -+...|+|...-...+... --.+.++||||+
T Consensus 473 lRSPI-cCilGHVDTGKTKlld~ir~tNVq-egeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh 550 (1064)
T KOG1144|consen 473 LRSPI-CCILGHVDTGKTKLLDKIRGTNVQ-EGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH 550 (1064)
T ss_pred cCCce-EEEeecccccchHHHHHhhccccc-cccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc
Confidence 34443 899999999999999999987753 4666677665443333222 123678999998
Q ss_pred CCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcch-----
Q 008468 377 RETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE----- 451 (564)
Q Consensus 377 ~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~----- 451 (564)
..|.+.... ....||++|+|+|+.++...+.++.++.+... +.|+||++||+|........
T Consensus 551 EsFtnlRsr--------gsslC~~aIlvvdImhGlepqtiESi~lLR~r------ktpFivALNKiDRLYgwk~~p~~~i 616 (1064)
T KOG1144|consen 551 ESFTNLRSR--------GSSLCDLAILVVDIMHGLEPQTIESINLLRMR------KTPFIVALNKIDRLYGWKSCPNAPI 616 (1064)
T ss_pred hhhhhhhhc--------cccccceEEEEeehhccCCcchhHHHHHHHhc------CCCeEEeehhhhhhcccccCCCchH
Confidence 877765322 25679999999999999988888888876653 78999999999975432100
Q ss_pred -----------hhh-----------hcc---------------cCCcEEEEeccCCCCHHHHHHHHHHHh
Q 008468 452 -----------WNK-----------VGN---------------SFNDHVFTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 452 -----------~~~-----------l~~---------------~~~~~i~iSAktg~GI~eL~~~L~~~l 484 (564)
..+ |.+ .+..++++||.+|+||.+|+.+|.+..
T Consensus 617 ~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt 686 (1064)
T KOG1144|consen 617 VEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT 686 (1064)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence 001 111 113468999999999999999988754
No 299
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.00 E-value=4.3e-10 Score=110.32 Aligned_cols=164 Identities=24% Similarity=0.293 Sum_probs=116.0
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCc
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGAD 399 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD 399 (564)
+|.++|-|.+|||||+..|++.. +.|..+.+||...+.+...+++-++.+.|.||+.+....-...| .+.....+.|+
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg-~qviavartcn 138 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRG-KQVIAVARTCN 138 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCC-CccccccceeEEEecceEeccccceeeecCcchhcccccCCCCc-cEEEEEeeccc
Confidence 89999999999999999999975 56888999999999999999999999999999976432211111 11223467899
Q ss_pred EEEEEecCCCCCChhHH--------------------------------------HHHHHHHhccccC------------
Q 008468 400 VIIMTVSAVDGWTSEDS--------------------------------------ELLNRIQSNKKST------------ 429 (564)
Q Consensus 400 ~vl~ViD~s~~~s~~~~--------------------------------------~~l~~l~~~~~~~------------ 429 (564)
++++|+|+..+.+.... .....+...++..
T Consensus 139 li~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~ 218 (358)
T KOG1487|consen 139 LIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATA 218 (358)
T ss_pred EEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcch
Confidence 99999999866532211 1111111111100
Q ss_pred ----------CCCCCEEEEEecCCCCCCCcchhhhhcccCCcEEEEeccCCCCHHHHHHHHHHHhhccC
Q 008468 430 ----------ESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ 488 (564)
Q Consensus 430 ----------~~~~PvIvV~NK~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL~~~L~~~l~~~~ 488 (564)
..-+|.+.++||+|-..-++.+ +....+..+++||-++.|++++++.+.+.+...+
T Consensus 219 DdLIdvVegnr~yVp~iyvLNkIdsISiEELd---ii~~iphavpISA~~~wn~d~lL~~mweyL~Lvr 284 (358)
T KOG1487|consen 219 DDLIDVVEGNRIYVPCIYVLNKIDSISIEELD---IIYTIPHAVPISAHTGWNFDKLLEKMWEYLKLVR 284 (358)
T ss_pred hhhhhhhccCceeeeeeeeecccceeeeeccc---eeeeccceeecccccccchHHHHHHHhhcchheE
Confidence 1246889999999976543322 2334567899999999999999999998775433
No 300
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.00 E-value=6.5e-10 Score=110.55 Aligned_cols=149 Identities=24% Similarity=0.273 Sum_probs=87.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC------Ccce--eccccCee-----------------EEEEEEEE----------
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS------ERAI--VTEIAGTT-----------------RDVIEASV---------- 361 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~------~~~~--vs~~~gtT-----------------~d~~~~~~---------- 361 (564)
+.+.|+|.|+||+|||||+++|... ..+. +.+..+.| .......+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 4579999999999999999998742 2211 11110000 01122221
Q ss_pred ----------EECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCC
Q 008468 362 ----------TVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTES 431 (564)
Q Consensus 362 ----------~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~ 431 (564)
..-|+.++|+.|.|..+.+-.+ ..-+|.+++|+-+..+...+-.+. -+++
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I-----------~~~aD~~v~v~~Pg~GD~iQ~~Ka--GimE------- 167 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVDI-----------ADMADTVVLVLVPGLGDEIQAIKA--GIME------- 167 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHHHH-----------HTTSSEEEEEEESSTCCCCCTB-T--THHH-------
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHHHH-----------HHhcCeEEEEecCCCccHHHHHhh--hhhh-------
Confidence 1135668999999988764332 566999999998776654442210 0111
Q ss_pred CCCEEEEEecCCCCCCCcchh--h---hhc-----ccCCcEEEEeccCCCCHHHHHHHHHHHhhc
Q 008468 432 STPMILVINKIDCAPSASNEW--N---KVG-----NSFNDHVFTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 432 ~~PvIvV~NK~DL~~~~~~~~--~---~l~-----~~~~~~i~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
..-|+|+||+|+........ + .+. .+.++++.+||.+|.|+++|++.|.+....
T Consensus 168 -iaDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~ 231 (266)
T PF03308_consen 168 -IADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDY 231 (266)
T ss_dssp -H-SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred -hccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 24589999999644322111 1 111 134689999999999999999999987643
No 301
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.99 E-value=2.4e-09 Score=105.99 Aligned_cols=168 Identities=21% Similarity=0.208 Sum_probs=95.7
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcCCcce------------eccccCe----eEEEEEEE-----EEE----------
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKSERAI------------VTEIAGT----TRDVIEAS-----VTV---------- 363 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~------------vs~~~gt----T~d~~~~~-----~~~---------- 363 (564)
.+.++-|+++|..|+|||||+.+|...-.+. |.+.|.- .||.+.+. +.+
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 4556789999999999999999997632211 1111110 11111110 000
Q ss_pred ------------------CCeeeEEEeCCCCCCchhHHHHh-hhhhhhhhhhcCcEEEEEecCCCCCChhHH--HHHHHH
Q 008468 364 ------------------CGVPVTLLDTAGIRETDDIVEKI-GVERSEAVALGADVIIMTVSAVDGWTSEDS--ELLNRI 422 (564)
Q Consensus 364 ------------------~g~~i~LiDTpG~~~~~~~ie~~-~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~--~~l~~l 422 (564)
+.....|+||||+.+...+...- -+..+.. -...-++++|+|..+..+.... ..+...
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~la-ss~ptvv~YvvDt~rs~~p~tFMSNMlYAc 174 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLA-SSFPTVVVYVVDTPRSTSPTTFMSNMLYAC 174 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHh-hcCCeEEEEEecCCcCCCchhHHHHHHHHH
Confidence 11337899999997532211100 0111211 2345688999998664333221 111111
Q ss_pred HhccccCCCCCCEEEEEecCCCCCCCcchh-----hh----hcc------------------c---CCcEEEEeccCCCC
Q 008468 423 QSNKKSTESSTPMILVINKIDCAPSASNEW-----NK----VGN------------------S---FNDHVFTCAVTGQG 472 (564)
Q Consensus 423 ~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-----~~----l~~------------------~---~~~~i~iSAktg~G 472 (564)
--. ...+.|+|+|.||+|+.+...... +. +.+ . ....+.+|+.+|.|
T Consensus 175 Sil---yktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G 251 (366)
T KOG1532|consen 175 SIL---YKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEG 251 (366)
T ss_pred HHH---HhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCc
Confidence 111 123789999999999987643221 11 110 0 13578999999999
Q ss_pred HHHHHHHHHHHhhc
Q 008468 473 IQDLETAIMKIVGL 486 (564)
Q Consensus 473 I~eL~~~L~~~l~~ 486 (564)
.++++.++.+.+..
T Consensus 252 ~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 252 FDDFFTAVDESVDE 265 (366)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
No 302
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.98 E-value=1.7e-09 Score=101.03 Aligned_cols=57 Identities=28% Similarity=0.460 Sum_probs=48.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGI 376 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~ 376 (564)
.+++|+++|.||||||||+|+|.+.....+++++|+|++..... . +..+.++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~--~-~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYIT--L-MKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEE--c-CCCEEEEECcCC
Confidence 35789999999999999999999999888999999999865433 2 345899999995
No 303
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=5.4e-09 Score=100.26 Aligned_cols=122 Identities=20% Similarity=0.240 Sum_probs=80.1
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGA 398 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~a 398 (564)
-.|.++|+.++|||+|+-.|...... -.-|.....+..+.++...+.++|.||..........+ ... -..+
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~----~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~----~~~-~~~a 109 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHR----GTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEY----LKH-NYSA 109 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCcc----CeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHH----ccc-cccc
Confidence 56999999999999999999877421 11233445556667777789999999987654443322 111 1378
Q ss_pred cEEEEEecCCCCCC--hhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCc
Q 008468 399 DVIIMTVSAVDGWT--SEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449 (564)
Q Consensus 399 D~vl~ViD~s~~~s--~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~ 449 (564)
-+++||+|...-.. .+-.+.+..++..........|++++.||.|+.....
T Consensus 110 kaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt 162 (238)
T KOG0090|consen 110 KAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKT 162 (238)
T ss_pred eeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCc
Confidence 89999999864211 1222444444433222345789999999999976543
No 304
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.95 E-value=1.5e-08 Score=99.18 Aligned_cols=52 Identities=17% Similarity=0.216 Sum_probs=38.3
Q ss_pred CCCEEEEEecCCCCCCCcch--h--hhhcc--cCCcEEEEeccCCCCHHHHHHHHHHH
Q 008468 432 STPMILVINKIDCAPSASNE--W--NKVGN--SFNDHVFTCAVTGQGIQDLETAIMKI 483 (564)
Q Consensus 432 ~~PvIvV~NK~DL~~~~~~~--~--~~l~~--~~~~~i~iSAktg~GI~eL~~~L~~~ 483 (564)
..|.++++||+|+.+..... . +.+.. ...+++++||++|.|++++++++.+.
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999997542211 1 22222 23679999999999999999999875
No 305
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.93 E-value=1.1e-10 Score=109.21 Aligned_cols=157 Identities=18% Similarity=0.204 Sum_probs=114.5
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccc-cCeeEEEEEEEEEECCe---eeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEI-AGTTRDVIEASVTVCGV---PVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~-~gtT~d~~~~~~~~~g~---~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
+++.|+|.-++||||++.+.+...+. ..| .....|.....+.+++. .+.|||.+|++.+..+ ++.+
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs--~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~m--------trVy 95 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFS--YHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNM--------TRVY 95 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHH--HHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcce--------EEEE
Confidence 78999999999999999999887654 222 22233444445566654 4579999999876554 4456
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHHHHhccc--cCCCCCCEEEEEecCCCCCCCcchh----hhhcc--cCCcEEEEe
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNRIQSNKK--STESSTPMILVINKIDCAPSASNEW----NKVGN--SFNDHVFTC 466 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~--~~~~~~PvIvV~NK~DL~~~~~~~~----~~l~~--~~~~~i~iS 466 (564)
++.+++..+|||+++..+++....|..-+...- ..+...|+++..||||.......+. +++.+ .+...+++|
T Consensus 96 ykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets 175 (229)
T KOG4423|consen 96 YKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETS 175 (229)
T ss_pred ecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeec
Confidence 899999999999999988887766665332211 2245567899999999876544332 33332 456789999
Q ss_pred ccCCCCHHHHHHHHHHHhh
Q 008468 467 AVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 467 Aktg~GI~eL~~~L~~~l~ 485 (564)
+|.+.+++|..+.+.+...
T Consensus 176 ~Kenkni~Ea~r~lVe~~l 194 (229)
T KOG4423|consen 176 AKENKNIPEAQRELVEKIL 194 (229)
T ss_pred cccccChhHHHHHHHHHHH
Confidence 9999999999999988764
No 306
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=9.5e-09 Score=108.25 Aligned_cols=153 Identities=22% Similarity=0.198 Sum_probs=115.0
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcc--eeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhc
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERA--IVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALG 397 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~--~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~ 397 (564)
-|+-.|+-.-|||||+.++.+..-. .-....|+|.|...+....++..+.++|+||+.++-.. ....+..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~--------miag~~~ 73 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISN--------LLAGLGG 73 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHH--------HHhhhcC
Confidence 4788899999999999999986532 22345789999999999998889999999998665211 1233667
Q ss_pred CcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcc----cCCcEEEEeccCCC
Q 008468 398 ADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGN----SFNDHVFTCAVTGQ 471 (564)
Q Consensus 398 aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~----~~~~~i~iSAktg~ 471 (564)
.|.+++|+|++++...+..+.+..+... .-...++|+||+|+.+....+. +++.. ...+++.+|+++|.
T Consensus 74 ~d~alLvV~~deGl~~qtgEhL~iLdll-----gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~ 148 (447)
T COG3276 74 IDYALLVVAADEGLMAQTGEHLLILDLL-----GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGR 148 (447)
T ss_pred CceEEEEEeCccCcchhhHHHHHHHHhc-----CCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCC
Confidence 8999999999988888877665543322 1234699999999987654332 22221 22467999999999
Q ss_pred CHHHHHHHHHHHhh
Q 008468 472 GIQDLETAIMKIVG 485 (564)
Q Consensus 472 GI~eL~~~L~~~l~ 485 (564)
||++|.+.|.+...
T Consensus 149 GI~~Lk~~l~~L~~ 162 (447)
T COG3276 149 GIEELKNELIDLLE 162 (447)
T ss_pred CHHHHHHHHHHhhh
Confidence 99999999999873
No 307
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=1.2e-08 Score=106.88 Aligned_cols=119 Identities=22% Similarity=0.284 Sum_probs=91.6
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcce---------------ec------cccCeeEEEEEEEEEECCeeeEEEeCCCCCC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAI---------------VT------EIAGTTRDVIEASVTVCGVPVTLLDTAGIRE 378 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~---------------vs------~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~ 378 (564)
..+|+-+|.+|||||...|+---.++ .+ ...|.+......++.++++.++|+||||+.+
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD 93 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED 93 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence 47999999999999999987322211 12 2345555666677889999999999999998
Q ss_pred chhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh
Q 008468 379 TDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452 (564)
Q Consensus 379 ~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~ 452 (564)
+.+. +...+..+|.+++|+|+..+...+..++++-+.. .+.|++-++||+|.......+.
T Consensus 94 FSED--------TYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrl------R~iPI~TFiNKlDR~~rdP~EL 153 (528)
T COG4108 94 FSED--------TYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRL------RDIPIFTFINKLDREGRDPLEL 153 (528)
T ss_pred cchh--------HHHHHHhhheeeEEEecccCccHHHHHHHHHHhh------cCCceEEEeeccccccCChHHH
Confidence 7543 3455778999999999999998888877665432 4899999999999987766554
No 308
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.85 E-value=1.4e-08 Score=104.65 Aligned_cols=61 Identities=31% Similarity=0.403 Sum_probs=51.7
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCc
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRET 379 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~ 379 (564)
..+++|+++|.||||||||+|+|.+.....+++.||+|++... +.++ ..+.++||||+...
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~~-~~~~l~DtPGi~~~ 179 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQW--IKLG-KGLELLDTPGILWP 179 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEE--EEeC-CcEEEEECCCcCCC
Confidence 4568999999999999999999999988788999999999754 3333 46899999999754
No 309
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.84 E-value=1.7e-08 Score=103.44 Aligned_cols=125 Identities=20% Similarity=0.300 Sum_probs=74.2
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceec-cc--------cCeeEEEEEEEEEECCe--eeEEEeCCCCCCchh------
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVT-EI--------AGTTRDVIEASVTVCGV--PVTLLDTAGIRETDD------ 381 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs-~~--------~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~------ 381 (564)
++|+|+|.+|+|||||+|.|++....... .+ ..+........+.-++. .+.++||||+.+.-+
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~ 84 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWE 84 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhH
Confidence 78999999999999999999997643221 11 11122222333343554 467899999885321
Q ss_pred HHHH-------------hhhhhhhhhhhcCcEEEEEecCCC-CCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCC
Q 008468 382 IVEK-------------IGVERSEAVALGADVIIMTVSAVD-GWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447 (564)
Q Consensus 382 ~ie~-------------~~i~~~~~~l~~aD~vl~ViD~s~-~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~ 447 (564)
.+.. ..+.|....-.+.|++||+++++. +....|.+.++.+.. .+++|-|+.|+|....
T Consensus 85 ~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-------~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 85 PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-------RVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-------TSEEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-------cccEEeEEecccccCH
Confidence 1111 112221112246799999999874 577788888887754 4789999999998775
Q ss_pred Ccc
Q 008468 448 ASN 450 (564)
Q Consensus 448 ~~~ 450 (564)
.+.
T Consensus 158 ~el 160 (281)
T PF00735_consen 158 EEL 160 (281)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 310
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.82 E-value=5.3e-09 Score=104.68 Aligned_cols=114 Identities=18% Similarity=0.155 Sum_probs=57.4
Q ss_pred eeEEEeCCCCCCchhHHHHhhhhhhhhhh--hcCcEEEEEecCCCCCChhHH--HHHHHHHhccccCCCCCCEEEEEecC
Q 008468 367 PVTLLDTAGIRETDDIVEKIGVERSEAVA--LGADVIIMTVSAVDGWTSEDS--ELLNRIQSNKKSTESSTPMILVINKI 442 (564)
Q Consensus 367 ~i~LiDTpG~~~~~~~ie~~~i~~~~~~l--~~aD~vl~ViD~s~~~s~~~~--~~l~~l~~~~~~~~~~~PvIvV~NK~ 442 (564)
.+.|+||||+.+....++... +-...+ ...-++++++|+....+.... ..+..+.... ..+.|.|.|+||+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~--~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~---~~~lP~vnvlsK~ 166 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGR--KIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIML---RLELPHVNVLSKI 166 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHH--HHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHH---HHTSEEEEEE--G
T ss_pred cEEEEeCCCCEEEEEechhHH--HHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHh---hCCCCEEEeeecc
Confidence 488999999987543332221 011112 334578999999765443332 1111111111 1268999999999
Q ss_pred CCCCCCcch------------------h----hhhc---cc--CC-cEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 443 DCAPSASNE------------------W----NKVG---NS--FN-DHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 443 DL~~~~~~~------------------~----~~l~---~~--~~-~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
|+.+..... . +++. +. .. +++++|+++++|+++|+..+.+..+
T Consensus 167 Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~~ 237 (238)
T PF03029_consen 167 DLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKANQ 237 (238)
T ss_dssp GGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHHH
T ss_pred CcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHhc
Confidence 998732000 0 1111 11 13 7899999999999999999987653
No 311
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.82 E-value=3.2e-08 Score=96.44 Aligned_cols=77 Identities=25% Similarity=0.239 Sum_probs=50.5
Q ss_pred CcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCc--chh--hhhc--ccCCcEEEEeccCCC
Q 008468 398 ADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS--NEW--NKVG--NSFNDHVFTCAVTGQ 471 (564)
Q Consensus 398 aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~--~~~--~~l~--~~~~~~i~iSAktg~ 471 (564)
+|.++.|+|+.+..+.... ....+ ...-++++||+|+.+... ... +.+. +...+++++||++|.
T Consensus 113 ~~~~i~vvD~~~~~~~~~~-~~~qi---------~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~ 182 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPRK-GGPGI---------TRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKE 182 (199)
T ss_pred hCcEEEEEEcchhhhhhhh-hHhHh---------hhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 5789999999875442211 00111 123489999999985322 111 1222 234689999999999
Q ss_pred CHHHHHHHHHHHh
Q 008468 472 GIQDLETAIMKIV 484 (564)
Q Consensus 472 GI~eL~~~L~~~l 484 (564)
|+++++++|.+.+
T Consensus 183 gi~el~~~i~~~~ 195 (199)
T TIGR00101 183 GLDTVIDWIEHYA 195 (199)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999998765
No 312
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.80 E-value=1.8e-08 Score=93.91 Aligned_cols=58 Identities=36% Similarity=0.582 Sum_probs=49.5
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGI 376 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~ 376 (564)
..+.+++++|.||+|||||+|+|++.....++..++||++.....+ +..+.++||||+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 3568899999999999999999999887678889999999876543 356899999996
No 313
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=6.8e-09 Score=95.66 Aligned_cols=154 Identities=19% Similarity=0.226 Sum_probs=103.9
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
-++.-|++++|--|+|||||++.|-.+... ...| |.......+.++|.+++-+|..|....... ++.+
T Consensus 17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl~--qhvP--TlHPTSE~l~Ig~m~ftt~DLGGH~qArr~--------wkdy 84 (193)
T KOG0077|consen 17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRLG--QHVP--TLHPTSEELSIGGMTFTTFDLGGHLQARRV--------WKDY 84 (193)
T ss_pred hccCceEEEEeecCCchhhHHHHHcccccc--ccCC--CcCCChHHheecCceEEEEccccHHHHHHH--------HHHH
Confidence 345578999999999999999999877643 2222 333444567889999999999997543332 3566
Q ss_pred hhcCcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-h---hhc---------c---
Q 008468 395 ALGADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-N---KVG---------N--- 457 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~---~l~---------~--- 457 (564)
+..+|.+++.+|+.+...+.+. ..++.+.... .-.+.|+++.+||+|......... . .+. .
T Consensus 85 f~~v~~iv~lvda~d~er~~es~~eld~ll~~e--~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~ 162 (193)
T KOG0077|consen 85 FPQVDAIVYLVDAYDQERFAESKKELDALLSDE--SLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTD 162 (193)
T ss_pred HhhhceeEeeeehhhHHHhHHHHHHHHHHHhHH--HHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccC
Confidence 8899999999999987655543 3333333321 124789999999999987654332 0 000 0
Q ss_pred ---cCCcEEEEeccCCCCHHHHHHHHHH
Q 008468 458 ---SFNDHVFTCAVTGQGIQDLETAIMK 482 (564)
Q Consensus 458 ---~~~~~i~iSAktg~GI~eL~~~L~~ 482 (564)
+...++.||...+.|.-+-+.++..
T Consensus 163 ~~~rp~evfmcsi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 163 SNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred CCCCeEEEEEEEEEccCccceeeeehhh
Confidence 0123677888888886666666544
No 314
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.78 E-value=2.4e-08 Score=90.96 Aligned_cols=156 Identities=17% Similarity=0.223 Sum_probs=107.0
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCee--eEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVP--VTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~--i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||.++|++..|||||+-...+++... ............+.+.+.|.. +.+||..|.+++.+++. .+.
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de-~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lP--------iac 90 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDE-EYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLP--------IAC 90 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHH-HHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCc--------eee
Confidence 3899999999999999999999887531 112223345566677777755 56899999987766532 235
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--------hhhcc-cCCcEEEEe
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--------NKVGN-SFNDHVFTC 466 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--------~~l~~-~~~~~i~iS 466 (564)
.++-+++|++|.+.+.+......|.+-. .......+| |+|++|-|+.-.-..+. ..+++ ...+.|.+|
T Consensus 91 ~dsvaIlFmFDLt~r~TLnSi~~WY~QA--r~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~S 167 (205)
T KOG1673|consen 91 KDSVAILFMFDLTRRSTLNSIKEWYRQA--RGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCS 167 (205)
T ss_pred cCcEEEEEEEecCchHHHHHHHHHHHHH--hccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEee
Confidence 7788999999999987776654443321 122233456 57999999743222211 12222 225789999
Q ss_pred ccCCCCHHHHHHHHHHHhh
Q 008468 467 AVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 467 Aktg~GI~eL~~~L~~~l~ 485 (564)
+....|++.+|..+...+.
T Consensus 168 ts~sINv~KIFK~vlAklF 186 (205)
T KOG1673|consen 168 TSHSINVQKIFKIVLAKLF 186 (205)
T ss_pred ccccccHHHHHHHHHHHHh
Confidence 9999999999998877664
No 315
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.78 E-value=2.3e-08 Score=102.35 Aligned_cols=60 Identities=35% Similarity=0.433 Sum_probs=50.6
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRE 378 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~ 378 (564)
...++|+++|.||||||||+|+|.+.....++..||+|+.... +.++ ..+.++||||+..
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~~-~~~~l~DtPG~~~ 175 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQW--IKLS-DGLELLDTPGILW 175 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEE--EEeC-CCEEEEECCCccc
Confidence 3468999999999999999999999888888999999998754 3333 3689999999954
No 316
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=3.1e-08 Score=107.22 Aligned_cols=147 Identities=21% Similarity=0.254 Sum_probs=98.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcce------------------------------eccccCeeEEEEEEEEEECCe
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAI------------------------------VTEIAGTTRDVIEASVTVCGV 366 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~------------------------------vs~~~gtT~d~~~~~~~~~g~ 366 (564)
.-+.++++|+.++|||||+-+|+..--.+ .....|+|.++....++-+..
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 44789999999999999999987421100 122367888888888888888
Q ss_pred eeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCCh-------hHHHHHHHHHhccccCCCCCCEEEEE
Q 008468 367 PVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTS-------EDSELLNRIQSNKKSTESSTPMILVI 439 (564)
Q Consensus 367 ~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~-------~~~~~l~~l~~~~~~~~~~~PvIvV~ 439 (564)
.++|+|+||+.+|-.- +..-...||+.++|+|++.+... +..+... ++.... -..+||++
T Consensus 256 ~~tliDaPGhkdFi~n--------mi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~-llr~Lg----i~qlivai 322 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPN--------MISGASQADVAVLVVDASTGEFESGFDPGGQTREHAL-LLRSLG----ISQLIVAI 322 (603)
T ss_pred eEEEecCCCccccchh--------hhccccccceEEEEEECCcchhhhccCCCCchHHHHH-HHHHcC----cceEEEEe
Confidence 8999999998877422 12336789999999999864321 1122222 222111 24589999
Q ss_pred ecCCCCCCCcchhhhhc--------------ccCCcEEEEeccCCCCHHHH
Q 008468 440 NKIDCAPSASNEWNKVG--------------NSFNDHVFTCAVTGQGIQDL 476 (564)
Q Consensus 440 NK~DL~~~~~~~~~~l~--------------~~~~~~i~iSAktg~GI~eL 476 (564)
||+|+.+=.+...+++. +....+++||+.+|+|+...
T Consensus 323 NKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 323 NKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 99999764433222111 11236899999999997654
No 317
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.76 E-value=1.8e-08 Score=97.14 Aligned_cols=56 Identities=41% Similarity=0.568 Sum_probs=46.2
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCc--------ceeccccCeeEEEEEEEEEECCeeeEEEeCCCC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSER--------AIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGI 376 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~--------~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~ 376 (564)
+.+++++|.+|||||||+|+|.+... ..++..||||++.....+.. .+.++||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 46899999999999999999998542 35678899999987665532 5799999996
No 318
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.76 E-value=1.8e-08 Score=105.28 Aligned_cols=61 Identities=33% Similarity=0.471 Sum_probs=52.4
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCc
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRET 379 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~ 379 (564)
....+++|+|.||||||||||+|++...+.++..||+|.+.....+.- .+.|+||||+.-.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~---~i~LlDtPGii~~ 190 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD---GIYLLDTPGIIPP 190 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC---CeEEecCCCcCCC
Confidence 345889999999999999999999999999999999999887655443 3899999999743
No 319
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.74 E-value=4e-08 Score=93.22 Aligned_cols=58 Identities=36% Similarity=0.539 Sum_probs=49.6
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGI 376 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~ 376 (564)
..+++++++|.+|+|||||+|+|.+..+..++..+++|.+.....+. ..+.++||||+
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 45589999999999999999999998877788899999887765443 56899999997
No 320
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.74 E-value=4.6e-08 Score=99.90 Aligned_cols=51 Identities=16% Similarity=0.239 Sum_probs=37.7
Q ss_pred CCEEEEEecCCCCCCCc--chh--hhhcc--cCCcEEEEeccCCCCHHHHHHHHHHH
Q 008468 433 TPMILVINKIDCAPSAS--NEW--NKVGN--SFNDHVFTCAVTGQGIQDLETAIMKI 483 (564)
Q Consensus 433 ~PvIvV~NK~DL~~~~~--~~~--~~l~~--~~~~~i~iSAktg~GI~eL~~~L~~~ 483 (564)
.+-++|+||+|+.+... ... +.+.. ...+++++||++|.|+++|.++|.+.
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 46799999999986422 111 22222 34679999999999999999999774
No 321
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=6e-08 Score=105.09 Aligned_cols=206 Identities=17% Similarity=0.168 Sum_probs=130.1
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcce-----------------eccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhH
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAI-----------------VTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDI 382 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~-----------------vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ 382 (564)
+|.+.-+-.+||||+-++++....-+ .....|+|...-...+.|+...++++||||+.++.-.
T Consensus 41 NIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~E 120 (721)
T KOG0465|consen 41 NIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFE 120 (721)
T ss_pred ccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEE
Confidence 58899999999999999987543211 1123456666666778888999999999999998755
Q ss_pred HHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhcccC--
Q 008468 383 VEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGNSF-- 459 (564)
Q Consensus 383 ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~~~-- 459 (564)
+| |+ ++.-|..++|+|+..+...+....|+++... ++|.|..+||+|......... +.+..++
T Consensus 121 Ve-----RA---LrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry------~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~ 186 (721)
T KOG0465|consen 121 VE-----RA---LRVLDGAVLVLDAVAGVESQTETVWRQMKRY------NVPRICFINKMDRMGASPFRTLNQIRTKLNH 186 (721)
T ss_pred eh-----hh---hhhccCeEEEEEcccceehhhHHHHHHHHhc------CCCeEEEEehhhhcCCChHHHHHHHHhhcCC
Confidence 43 33 6777999999999999888888888887654 789999999999987765443 3333322
Q ss_pred -CcEEEEeccCCCCHHHHHHHHHHHhhccCCCCCCc---cccccHHHHHHHHHHHHHHHHHHHHHhhcC------ChhhH
Q 008468 460 -NDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGR---RWAVNQRQCEQLMRTKEALVRLKSSIEEEL------PLDFW 529 (564)
Q Consensus 460 -~~~i~iSAktg~GI~eL~~~L~~~l~~~~~~~~~~---~~~~~~r~~~~l~~~~~~L~~~~~~l~~~l------~~el~ 529 (564)
+-.+.+-.....++..+.+.+...+.... ..+.. .-.+++...++...++++|.+.+..+++.+ ..+..
T Consensus 187 ~~a~vqiPig~e~~f~GvvDlv~~kai~~~-g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps 265 (721)
T KOG0465|consen 187 KPAVVQIPIGSESNFKGVVDLVNGKAIYWD-GENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPS 265 (721)
T ss_pred chheeEccccccccchhHHhhhhceEEEEc-CCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCC
Confidence 12233333333334444443433322111 11111 123455666666666666666655554433 12344
Q ss_pred HHHHHHHHHHH
Q 008468 530 TIDLRDAALAL 540 (564)
Q Consensus 530 ~~eLr~a~~~L 540 (564)
...|..|++..
T Consensus 266 ~~~l~~aIRr~ 276 (721)
T KOG0465|consen 266 AQQLKAAIRRA 276 (721)
T ss_pred HHHHHHHHHHH
Confidence 56677776643
No 322
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=1.5e-07 Score=95.98 Aligned_cols=157 Identities=27% Similarity=0.302 Sum_probs=101.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC--cc----eeccccCeeEEEEEEEEEEC---------CeeeEEEeCCCCCCchh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE--RA----IVTEIAGTTRDVIEASVTVC---------GVPVTLLDTAGIRETDD 381 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~--~~----~vs~~~gtT~d~~~~~~~~~---------g~~i~LiDTpG~~~~~~ 381 (564)
..++++|+|+..+|||||..+|..-. .+ ..+...+.|.|.-...+... ..++.++|.||...
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas--- 82 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS--- 82 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH---
Confidence 34899999999999999999997521 11 12334566666544443331 24578999999732
Q ss_pred HHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--h----hh
Q 008468 382 IVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--N----KV 455 (564)
Q Consensus 382 ~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~----~l 455 (564)
.+..+ .....-.|+.++|+|+..+...+..+.+-. -.. .-...++|+||+|+.++..... + .+
T Consensus 83 LIRti-----iggaqiiDlm~lviDv~kG~QtQtAEcLii-g~~-----~c~klvvvinkid~lpE~qr~ski~k~~kk~ 151 (522)
T KOG0461|consen 83 LIRTI-----IGGAQIIDLMILVIDVQKGKQTQTAECLII-GEL-----LCKKLVVVINKIDVLPENQRASKIEKSAKKV 151 (522)
T ss_pred HHHHH-----HhhhheeeeeeEEEehhcccccccchhhhh-hhh-----hccceEEEEeccccccchhhhhHHHHHHHHH
Confidence 22111 122344689999999998766665543321 010 1235789999999877644321 1 11
Q ss_pred cc--------cCCcEEEEeccCC----CCHHHHHHHHHHHhhcc
Q 008468 456 GN--------SFNDHVFTCAVTG----QGIQDLETAIMKIVGLH 487 (564)
Q Consensus 456 ~~--------~~~~~i~iSAktg----~GI~eL~~~L~~~l~~~ 487 (564)
.+ ...|++++||+.| +++.+|.+.|...+..+
T Consensus 152 ~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P 195 (522)
T KOG0461|consen 152 RKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP 195 (522)
T ss_pred HHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence 11 2268999999999 89999999998887543
No 323
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.70 E-value=2.6e-08 Score=91.49 Aligned_cols=55 Identities=36% Similarity=0.562 Sum_probs=47.0
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIR 377 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~ 377 (564)
+++++|.+|||||||+|+|++.....++..+++|++... +.+++ .+.+|||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQT--IFLTP-TITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEE--EEeCC-CEEEEECCCcC
Confidence 799999999999999999999988778889999988654 34444 68999999974
No 324
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.70 E-value=1.2e-07 Score=91.97 Aligned_cols=130 Identities=19% Similarity=0.229 Sum_probs=97.5
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC-eeeEEEeCCCCCCchhHHHHhhhhhhhhhhhc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG-VPVTLLDTAGIRETDDIVEKIGVERSEAVALG 397 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g-~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~ 397 (564)
-||.++|.+|+||||+=..++.+..+.-...+|-|.|+....+.+-| .-+.+||..|+..+ +|.+-...-....++
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~f---men~~~~q~d~iF~n 81 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEF---MENYLSSQEDNIFRN 81 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHH---HHHHHhhcchhhhee
Confidence 47999999999999998888877666666778999999888877644 77899999998532 333322222345789
Q ss_pred CcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcch
Q 008468 398 ADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE 451 (564)
Q Consensus 398 aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~ 451 (564)
.+++++|+|++......|....+..++......+...+++.+.|+|+......+
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~ 135 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARE 135 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHH
Confidence 999999999998777777766665444433445677799999999998766544
No 325
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.64 E-value=6.6e-08 Score=101.84 Aligned_cols=91 Identities=27% Similarity=0.267 Sum_probs=71.0
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC-----------------eeeEEEeCCCCCCch
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG-----------------VPVTLLDTAGIRETD 380 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g-----------------~~i~LiDTpG~~~~~ 380 (564)
+++++|+|.||+|||||+|+|++.....+.+||+||.+...+.+.+.+ ..+.++|.||+....
T Consensus 2 ~lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 2 GLSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred CceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 378999999999999999999998853678999999998888887755 247899999997543
Q ss_pred hHHHHhhhhhhhhhhhcCcEEEEEecCCC
Q 008468 381 DIVEKIGVERSEAVALGADVIIMTVSAVD 409 (564)
Q Consensus 381 ~~ie~~~i~~~~~~l~~aD~vl~ViD~s~ 409 (564)
..-+..| .+....++.+|++++|+|+..
T Consensus 82 s~g~Glg-n~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 82 SKGEGLG-NQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred hcccCcc-hHHHHHHHhCCEEEEEEeCCC
Confidence 3222222 223456899999999999853
No 326
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.61 E-value=1.7e-07 Score=93.46 Aligned_cols=155 Identities=21% Similarity=0.221 Sum_probs=99.6
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcce--eccccCeeEEEEEEEEEECCeeeEEEeCCCCCC------c----hhHH
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAI--VTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRE------T----DDIV 383 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~--vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~------~----~~~i 383 (564)
+..++++++|.+|||||||+|.++...... .+..+|-|+.... ..-|..+.++|.||+.. . .+..
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~---f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINH---FHVGKSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeee---eeccceEEEEecCCcccccCCccCcchHhHhH
Confidence 345899999999999999999999865321 2224555554433 22356789999999431 1 1222
Q ss_pred HHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcc--hh------hhh
Q 008468 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN--EW------NKV 455 (564)
Q Consensus 384 e~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~--~~------~~l 455 (564)
+.+-.+|. +--.+++++|++.+....|...+.++-+ .++|+.+|+||||....... .. ..+
T Consensus 211 ~~Y~leR~-----nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f 279 (320)
T KOG2486|consen 211 KSYLLERE-----NLVRVFLLVDASVPIQPTDNPEIAWLGE------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINF 279 (320)
T ss_pred HHHHHhhh-----hhheeeeeeeccCCCCCCChHHHHHHhh------cCCCeEEeeehhhhhhhccccccCccccceeeh
Confidence 22212211 2234677889988877777766666544 47999999999997643221 00 101
Q ss_pred c---c----cCCcEEEEeccCCCCHHHHHHHHHHHh
Q 008468 456 G---N----SFNDHVFTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 456 ~---~----~~~~~i~iSAktg~GI~eL~~~L~~~l 484 (564)
. . ...+.+.+|+.++.|++.|+-.|.+..
T Consensus 280 ~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~ 315 (320)
T KOG2486|consen 280 QGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQLR 315 (320)
T ss_pred hhccccceeccCCceeeecccccCceeeeeehhhhh
Confidence 1 1 124567899999999999987776643
No 327
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.60 E-value=4.6e-07 Score=93.88 Aligned_cols=126 Identities=21% Similarity=0.293 Sum_probs=80.6
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceec---cccC----eeEEEEEEE--EEECCe--eeEEEeCCCCCCchh---HH
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVT---EIAG----TTRDVIEAS--VTVCGV--PVTLLDTAGIRETDD---IV 383 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs---~~~g----tT~d~~~~~--~~~~g~--~i~LiDTpG~~~~~~---~i 383 (564)
.++|+++|+.|.|||||+|.|++....-.. +..+ .|....... +.-+|. .++++||||++++-+ -|
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~w 102 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCW 102 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccH
Confidence 378999999999999999999987321110 1111 223333333 333554 467899999986421 11
Q ss_pred H----------------Hhhhhhh-hhhhhcCcEEEEEecCCC-CCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCC
Q 008468 384 E----------------KIGVERS-EAVALGADVIIMTVSAVD-GWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445 (564)
Q Consensus 384 e----------------~~~i~~~-~~~l~~aD~vl~ViD~s~-~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~ 445 (564)
+ ...+.|. +..-.+.|++||.+-++. +.+..|.+.++.+.. .+.+|-|+.|+|..
T Consensus 103 e~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-------~vNlIPVI~KaD~l 175 (373)
T COG5019 103 EPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-------RVNLIPVIAKADTL 175 (373)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-------ccCeeeeeeccccC
Confidence 1 1112222 112346799999998764 677778888887754 46789999999988
Q ss_pred CCCcc
Q 008468 446 PSASN 450 (564)
Q Consensus 446 ~~~~~ 450 (564)
...+.
T Consensus 176 T~~El 180 (373)
T COG5019 176 TDDEL 180 (373)
T ss_pred CHHHH
Confidence 76543
No 328
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.58 E-value=7e-08 Score=98.50 Aligned_cols=91 Identities=34% Similarity=0.387 Sum_probs=70.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC-----------------eeeEEEeCCCCCCc
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG-----------------VPVTLLDTAGIRET 379 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g-----------------~~i~LiDTpG~~~~ 379 (564)
+.++++|||.||||||||+|+|+..... ..++|.+|.|..+..+.+.. ..+.++|++|+...
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 4589999999999999999999998865 89999999999988877643 23789999999754
Q ss_pred hhHHHHhhhhhhhhhhhcCcEEEEEecCCC
Q 008468 380 DDIVEKIGVERSEAVALGADVIIMTVSAVD 409 (564)
Q Consensus 380 ~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~ 409 (564)
...-+..|.. -...++.+|.++.|+++..
T Consensus 98 As~G~GLGN~-FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 98 ASAGEGLGNK-FLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cccCcCchHH-HHHhhhhccceeEEEEecC
Confidence 3322222211 2345889999999998763
No 329
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.56 E-value=6.5e-07 Score=88.90 Aligned_cols=89 Identities=21% Similarity=0.133 Sum_probs=64.5
Q ss_pred cEEEEEcCCCCChhHHHHHhhcC--CcceeccccCeeEEEEEEEEEE---CCeeeEEEeCCCCCCchhHHHHhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKS--ERAIVTEIAGTTRDVIEASVTV---CGVPVTLLDTAGIRETDDIVEKIGVERSEA 393 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~--~~~~vs~~~gtT~d~~~~~~~~---~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~ 393 (564)
.-|+|+|++++|||+|+|.|++. .+........+|+........+ .+..+.++||+|+.+....... ......
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~--~~~~~~ 85 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFE--DDARLF 85 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchh--hhhHHH
Confidence 46899999999999999999999 7766666788888877766665 3678999999999865321101 111122
Q ss_pred hhh--cCcEEEEEecCCC
Q 008468 394 VAL--GADVIIMTVSAVD 409 (564)
Q Consensus 394 ~l~--~aD~vl~ViD~s~ 409 (564)
.+. -+|++|+..+...
T Consensus 86 ~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 86 ALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHhCEEEEeccCcc
Confidence 233 4899999888754
No 330
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=2.8e-07 Score=100.53 Aligned_cols=113 Identities=21% Similarity=0.342 Sum_probs=81.6
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCccee---c----cc---------cCeeEEEEEEEEEE---CC--eeeEEEeCCCCC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIV---T----EI---------AGTTRDVIEASVTV---CG--VPVTLLDTAGIR 377 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~v---s----~~---------~gtT~d~~~~~~~~---~g--~~i~LiDTpG~~ 377 (564)
.+|+++|+-..|||+|+..|..+..... . .| .|.+......++.+ ++ +-++++||||+.
T Consensus 129 rnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHV 208 (971)
T KOG0468|consen 129 RNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHV 208 (971)
T ss_pred EEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcc
Confidence 5799999999999999999987653211 0 01 12222222222222 22 347899999999
Q ss_pred CchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCC
Q 008468 378 ETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445 (564)
Q Consensus 378 ~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~ 445 (564)
++.+.. ...++.+|++++|+|+..+.+....++++..... +.|+++|+||+|+.
T Consensus 209 nF~DE~--------ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~------~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 209 NFSDET--------TASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQN------RLPIVVVINKVDRL 262 (971)
T ss_pred cchHHH--------HHHhhhcceEEEEEEcccCceeeHHHHHHHHHhc------cCcEEEEEehhHHH
Confidence 886653 2448889999999999999998888888776543 78999999999963
No 331
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.52 E-value=3.6e-07 Score=97.04 Aligned_cols=61 Identities=36% Similarity=0.467 Sum_probs=48.9
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCC-----cceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSE-----RAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDD 381 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~-----~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~ 381 (564)
+.+|+++|.+|||||||+|+|++.. ...++.+||||++.....+ +..+.++||||+.....
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~---~~~~~l~DtPG~~~~~~ 219 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL---DDGHSLYDTPGIINSHQ 219 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe---CCCCEEEECCCCCChhH
Confidence 4689999999999999999999854 2468899999999775443 23468999999986543
No 332
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=3.7e-07 Score=94.83 Aligned_cols=117 Identities=21% Similarity=0.201 Sum_probs=92.3
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcce-----------ec------cccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhH
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAI-----------VT------EIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDI 382 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~-----------vs------~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ 382 (564)
+|+|+..-.+||||...+++....++ |+ ...|.|.......++|+|+.++++||||..++.-.
T Consensus 39 nigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~le 118 (753)
T KOG0464|consen 39 NIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLE 118 (753)
T ss_pred cceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEEE
Confidence 58999999999999999987532211 22 23567778888888999999999999999998766
Q ss_pred HHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcc
Q 008468 383 VEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450 (564)
Q Consensus 383 ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~ 450 (564)
+|.. ++.-|.++.|||++.+...+....|++.- ..+.|.++.+||+|.......
T Consensus 119 verc--------lrvldgavav~dasagve~qtltvwrqad------k~~ip~~~finkmdk~~anfe 172 (753)
T KOG0464|consen 119 VERC--------LRVLDGAVAVFDASAGVEAQTLTVWRQAD------KFKIPAHCFINKMDKLAANFE 172 (753)
T ss_pred HHHH--------HHHhcCeEEEEeccCCcccceeeeehhcc------ccCCchhhhhhhhhhhhhhhh
Confidence 5432 66779999999999998888888887643 347899999999998765443
No 333
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.52 E-value=3.7e-07 Score=84.95 Aligned_cols=89 Identities=18% Similarity=0.212 Sum_probs=62.3
Q ss_pred hhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhc-ccCCcEEEEecc
Q 008468 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVG-NSFNDHVFTCAV 468 (564)
Q Consensus 391 ~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~-~~~~~~i~iSAk 468 (564)
.+..++++|++++|+|++++....+..+...+.. .++|+++|+||+|+.+...... ..+. ....+++++||+
T Consensus 6 ~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~ 79 (156)
T cd01859 6 VRRIIKESDVVLEVLDARDPELTRSRKLERYVLE------LGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAK 79 (156)
T ss_pred HHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHh------CCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEcc
Confidence 3455778999999999988765555443333221 2579999999999964322111 1121 123478999999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 008468 469 TGQGIQDLETAIMKIVG 485 (564)
Q Consensus 469 tg~GI~eL~~~L~~~l~ 485 (564)
+|.|+++|++.+.+.+.
T Consensus 80 ~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 80 ERLGTKILRRTIKELAK 96 (156)
T ss_pred ccccHHHHHHHHHHHHh
Confidence 99999999999998774
No 334
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.51 E-value=4.3e-07 Score=84.53 Aligned_cols=57 Identities=35% Similarity=0.493 Sum_probs=45.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGI 376 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~ 376 (564)
...+++++|.+|+|||||+|+|.+.....+++.+++|.+... +.. +..+.+|||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~--~~~-~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQL--VKI-TSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEE--EEc-CCCEEEEECcCC
Confidence 347899999999999999999998776667788888766432 222 347899999995
No 335
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=4.2e-07 Score=92.21 Aligned_cols=160 Identities=22% Similarity=0.232 Sum_probs=97.1
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceecc--ccCeeEE--------------------EEEEEEEECC------ee
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTE--IAGTTRD--------------------VIEASVTVCG------VP 367 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~--~~gtT~d--------------------~~~~~~~~~g------~~ 367 (564)
+..++|+.+|+..-|||||..+|.|-.....++ ..+.|.. .....+...| ..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 456899999999999999999999842111010 1111111 0111111111 24
Q ss_pred eEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCC-hhHHHHHHHHHhccccCCCCCCEEEEEecCCCCC
Q 008468 368 VTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWT-SEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446 (564)
Q Consensus 368 i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s-~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~ 446 (564)
+.|+|.||++-. ...+ ..-..--|..++|++++.+.. .+..+.+-.+.-. .-+.+|+|-||+||.+
T Consensus 88 VSfVDaPGHe~L---MATM-----LsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi-----gik~iiIvQNKIDlV~ 154 (415)
T COG5257 88 VSFVDAPGHETL---MATM-----LSGAALMDGALLVIAANEPCPQPQTREHLMALEII-----GIKNIIIVQNKIDLVS 154 (415)
T ss_pred EEEeeCCchHHH---HHHH-----hcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh-----ccceEEEEecccceec
Confidence 779999997421 1111 111223489999999987532 2333333332211 1246899999999987
Q ss_pred CCcchh--hhhc---c----cCCcEEEEeccCCCCHHHHHHHHHHHhhccC
Q 008468 447 SASNEW--NKVG---N----SFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ 488 (564)
Q Consensus 447 ~~~~~~--~~l~---~----~~~~~i~iSAktg~GI~eL~~~L~~~l~~~~ 488 (564)
.....+ +++. + ...+++++||..+.||+.|+++|.+.+..+.
T Consensus 155 ~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~ 205 (415)
T COG5257 155 RERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPE 205 (415)
T ss_pred HHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence 654332 2222 1 2368999999999999999999999886443
No 336
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.50 E-value=2.1e-06 Score=83.91 Aligned_cols=125 Identities=26% Similarity=0.347 Sum_probs=80.6
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcce-------eccccCeeE-EEEEEEEEECCee--eEEEeCCCCCCc---hh---H
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAI-------VTEIAGTTR-DVIEASVTVCGVP--VTLLDTAGIRET---DD---I 382 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~-------vs~~~gtT~-d~~~~~~~~~g~~--i~LiDTpG~~~~---~~---~ 382 (564)
++|++||.+|.|||||+|.|+...... -.++|.|+. ......+.-+|++ ++++||||+++. ++ .
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWeP 126 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEP 126 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHH
Confidence 799999999999999999998754321 113444443 2333444556654 578999999853 21 2
Q ss_pred HHHhhhhhhhhhh--------------hcCcEEEEEecCCC-CCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCC
Q 008468 383 VEKIGVERSEAVA--------------LGADVIIMTVSAVD-GWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447 (564)
Q Consensus 383 ie~~~i~~~~~~l--------------~~aD~vl~ViD~s~-~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~ 447 (564)
+.++--++...|+ ...++++|.+.++. ....-|.+.++++-+. +.+|-|+-|+|-..-
T Consensus 127 I~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-------vNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 127 IEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-------VNVVPVIAKADTLTL 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-------heeeeeEeecccccH
Confidence 2222222222222 35789999998874 3455677888877654 568889999997654
Q ss_pred Ccc
Q 008468 448 ASN 450 (564)
Q Consensus 448 ~~~ 450 (564)
.+.
T Consensus 200 eEr 202 (336)
T KOG1547|consen 200 EER 202 (336)
T ss_pred HHH
Confidence 443
No 337
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=9.3e-07 Score=92.25 Aligned_cols=125 Identities=22% Similarity=0.346 Sum_probs=81.7
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCccee------ccccCeeEEEEEEEEEE--CCee--eEEEeCCCCCCchh-------
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIV------TEIAGTTRDVIEASVTV--CGVP--VTLLDTAGIRETDD------- 381 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~v------s~~~gtT~d~~~~~~~~--~g~~--i~LiDTpG~~~~~~------- 381 (564)
++++++|+.|.|||||+|.|+..+.... ...+..|..+......+ +|.. ++++||||+++.-+
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~p 101 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRP 101 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchh
Confidence 7899999999999999999998753311 11222233333333333 5554 57899999985321
Q ss_pred ---HHH---------HhhhhhhhhhhhcCcEEEEEecCCC-CCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCC
Q 008468 382 ---IVE---------KIGVERSEAVALGADVIIMTVSAVD-GWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448 (564)
Q Consensus 382 ---~ie---------~~~i~~~~~~l~~aD~vl~ViD~s~-~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~ 448 (564)
.++ .-++.|....-.+.|++||.+.++. +....|.+.++.+.. .+++|-|+-|+|.....
T Consensus 102 i~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-------~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 102 IVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-------KVNLIPVIAKADTLTKD 174 (366)
T ss_pred hhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-------cccccceeeccccCCHH
Confidence 111 1112222211237899999999875 477788888877654 57889999999988765
Q ss_pred cc
Q 008468 449 SN 450 (564)
Q Consensus 449 ~~ 450 (564)
+.
T Consensus 175 El 176 (366)
T KOG2655|consen 175 EL 176 (366)
T ss_pred HH
Confidence 44
No 338
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1.9e-06 Score=95.01 Aligned_cols=139 Identities=22% Similarity=0.341 Sum_probs=87.4
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEE------------------------------------
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIE------------------------------------ 358 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~------------------------------------ 358 (564)
.+...||+|.|.+++||||++|+++.++.- .+.+..+|.-+..
T Consensus 106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klL-P~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~ 184 (749)
T KOG0448|consen 106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLL-PSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDK 184 (749)
T ss_pred hhcccEEEEeCCCCCcHHHHHHHHHHHhhC-cccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccc
Confidence 355689999999999999999999987643 2332222221110
Q ss_pred -------EEEEE-CC------eeeEEEeCCCCCCc---hhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHH
Q 008468 359 -------ASVTV-CG------VPVTLLDTAGIRET---DDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNR 421 (564)
Q Consensus 359 -------~~~~~-~g------~~i~LiDTpG~~~~---~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~ 421 (564)
..+-+ ++ -.+.++|.||+.-. +.++. ....++|++|+|..+.+..+..+.+.+..
T Consensus 185 ~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid--------~~cldaDVfVlV~NaEntlt~sek~Ff~~ 256 (749)
T KOG0448|consen 185 DLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWID--------SFCLDADVFVLVVNAENTLTLSEKQFFHK 256 (749)
T ss_pred ccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHH--------HHhhcCCeEEEEecCccHhHHHHHHHHHH
Confidence 00111 11 13779999999732 33333 33678999999999988777777776666
Q ss_pred HHhccccCCCCCCEEEEEecCCCCCCCcchhhhhc------------ccCCcEEEEecc
Q 008468 422 IQSNKKSTESSTPMILVINKIDCAPSASNEWNKVG------------NSFNDHVFTCAV 468 (564)
Q Consensus 422 l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~------------~~~~~~i~iSAk 468 (564)
.... +..++++.||+|.........+.+. +....++.|||+
T Consensus 257 vs~~------KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 257 VSEE------KPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred hhcc------CCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 5432 3457788889998765433221111 122457899976
No 339
>PRK13796 GTPase YqeH; Provisional
Probab=98.46 E-value=3.9e-07 Score=96.95 Aligned_cols=59 Identities=37% Similarity=0.462 Sum_probs=46.2
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCC-----cceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCc
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSE-----RAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRET 379 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~-----~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~ 379 (564)
+.++.++|.+|||||||+|+|++.. ...++..||||++.....+. + ...++||||+...
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~--~-~~~l~DTPGi~~~ 223 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLD--D-GSFLYDTPGIIHR 223 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcC--C-CcEEEECCCcccc
Confidence 3579999999999999999998642 33478999999998765442 2 2489999999643
No 340
>PRK12289 GTPase RsgA; Reviewed
Probab=98.44 E-value=2e-07 Score=98.41 Aligned_cols=58 Identities=34% Similarity=0.428 Sum_probs=45.7
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccC-------eeEEEEEEEEEECCeeeEEEeCCCCCCch
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAG-------TTRDVIEASVTVCGVPVTLLDTAGIRETD 380 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~g-------tT~d~~~~~~~~~g~~i~LiDTpG~~~~~ 380 (564)
.++|+|++|||||||+|+|++.....+...++ ||++.....+. +| ..|+||||++.+.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~-~g--~~liDTPG~~~~~ 238 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELP-NG--GLLADTPGFNQPD 238 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECC-CC--cEEEeCCCccccc
Confidence 37999999999999999999988777777777 88877544332 22 2799999998653
No 341
>PRK12288 GTPase RsgA; Reviewed
Probab=98.43 E-value=2.9e-07 Score=97.14 Aligned_cols=57 Identities=33% Similarity=0.462 Sum_probs=42.9
Q ss_pred EEEEcCCCCChhHHHHHhhcCCcceeccccC-------eeEEEEEEEEEECCeeeEEEeCCCCCCch
Q 008468 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAG-------TTRDVIEASVTVCGVPVTLLDTAGIRETD 380 (564)
Q Consensus 321 I~IvG~~nvGKSSLlN~L~~~~~~~vs~~~g-------tT~d~~~~~~~~~g~~i~LiDTpG~~~~~ 380 (564)
++|+|.+|||||||+|+|++.....++++++ ||+......+.-++ .|+||||++++.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 7899999999999999999987666666654 56555444433222 599999998754
No 342
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=2.7e-06 Score=85.40 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=84.6
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCc---------------ceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCch
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSER---------------AIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD 380 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~---------------~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~ 380 (564)
+..++|+.+|+.+-|||||..+++..-. +.-....|.|.......++.+...+-.+|+||..++-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 3448999999999999999999875210 1112235677777777777788889999999997652
Q ss_pred hHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCC-EEEEEecCCCCCCCc
Q 008468 381 DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTP-MILVINKIDCAPSAS 449 (564)
Q Consensus 381 ~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~P-vIvV~NK~DL~~~~~ 449 (564)
..+ ..-..+.|..|+|+.++++...+..+.+-.... -+.| +++++||+|+.+..+
T Consensus 90 ---KNM-----ItgAaqmDgAILVVsA~dGpmPqTrEHiLlarq------vGvp~ivvflnK~Dmvdd~e 145 (394)
T COG0050 90 ---KNM-----ITGAAQMDGAILVVAATDGPMPQTREHILLARQ------VGVPYIVVFLNKVDMVDDEE 145 (394)
T ss_pred ---HHH-----hhhHHhcCccEEEEEcCCCCCCcchhhhhhhhh------cCCcEEEEEEecccccCcHH
Confidence 221 122456899999999999888887654432222 2454 678899999997543
No 343
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.40 E-value=2.4e-07 Score=88.43 Aligned_cols=50 Identities=30% Similarity=0.361 Sum_probs=37.4
Q ss_pred EEEEEecCCCCCCCcchhh----hhc--ccCCcEEEEeccCCCCHHHHHHHHHHHh
Q 008468 435 MILVINKIDCAPSASNEWN----KVG--NSFNDHVFTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 435 vIvV~NK~DL~~~~~~~~~----~l~--~~~~~~i~iSAktg~GI~eL~~~L~~~l 484 (564)
-++|+||.||.+......+ ... +...+++++|+++|+|++++++++....
T Consensus 145 DllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 145 DLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred eEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 4899999999877655321 111 2236899999999999999999987643
No 344
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.38 E-value=1.3e-06 Score=81.60 Aligned_cols=89 Identities=16% Similarity=0.187 Sum_probs=62.3
Q ss_pred hhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcccCC-cEEEEeccC
Q 008468 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGNSFN-DHVFTCAVT 469 (564)
Q Consensus 393 ~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~~~~-~~i~iSAkt 469 (564)
..+.++|++++|+|++++....+..+.+.+... ..++|+|+|+||+|+.+...... ..+.+.+. ..+++||++
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~----~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~ 79 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKE----KPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINN 79 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHHhc----cCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccc
Confidence 457899999999999987655554444444321 23589999999999975432221 33333332 247899999
Q ss_pred CCCHHHHHHHHHHHhh
Q 008468 470 GQGIQDLETAIMKIVG 485 (564)
Q Consensus 470 g~GI~eL~~~L~~~l~ 485 (564)
+.|+++|++.+.+.+.
T Consensus 80 ~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 80 PFGKGSLIQLLRQFSK 95 (157)
T ss_pred cccHHHHHHHHHHHHh
Confidence 9999999999987653
No 345
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.38 E-value=8.6e-05 Score=80.14 Aligned_cols=146 Identities=18% Similarity=0.229 Sum_probs=76.9
Q ss_pred CcEEEEEcCCCCChhHHHHHhh------cCCcceeccccC-----------ee---EEEEEEEE--E-------------
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWS------KSERAIVTEIAG-----------TT---RDVIEASV--T------------- 362 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~------~~~~~~vs~~~g-----------tT---~d~~~~~~--~------------- 362 (564)
+..|+++|.+||||||++..|. +.....++.-+. .. ..+..... .
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999987 333333322110 00 01111000 0
Q ss_pred ECCeeeEEEeCCCCCCchh-HHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEec
Q 008468 363 VCGVPVTLLDTAGIRETDD-IVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINK 441 (564)
Q Consensus 363 ~~g~~i~LiDTpG~~~~~~-~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK 441 (564)
-+++.++|+||||...... ..+... .. .....+|.+++|+|++.+... ......+... -.+.-+|+||
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~--~i-~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~------~~~~g~IlTK 248 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEML--QV-AEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDS------VDVGSVIITK 248 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHH--HH-hhhcCCcEEEEEeccccChhH--HHHHHHHHhc------cCCcEEEEEC
Confidence 0256889999999765432 222221 11 123467899999998765332 2223333221 1256789999
Q ss_pred CCCCCCCcchhhhhcccCCcEEEEeccCCCCHHHH
Q 008468 442 IDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDL 476 (564)
Q Consensus 442 ~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL 476 (564)
.|-...-.....-......|+.+++ +|++++++
T Consensus 249 lD~~argG~aLs~~~~t~~PI~fig--~Ge~v~Dl 281 (429)
T TIGR01425 249 LDGHAKGGGALSAVAATKSPIIFIG--TGEHIDDF 281 (429)
T ss_pred ccCCCCccHHhhhHHHHCCCeEEEc--CCCChhhc
Confidence 9975433211111111123444443 46666665
No 346
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.38 E-value=1.2e-06 Score=88.23 Aligned_cols=86 Identities=20% Similarity=0.191 Sum_probs=62.5
Q ss_pred hhhhcCcEEEEEecCCCCC-ChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcccCCcEEEEecc
Q 008468 393 AVALGADVIIMTVSAVDGW-TSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGNSFNDHVFTCAV 468 (564)
Q Consensus 393 ~~l~~aD~vl~ViD~s~~~-s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~~~~~~i~iSAk 468 (564)
.++.++|.+++|+|++++. ++.....|..... ..+.|+++|+||+||.+...... +.+.....+++++||+
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~-----~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAk 106 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELSLNQLDRFLVVAE-----AQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSK 106 (245)
T ss_pred cccccCCEEEEEEECCCCCCCHHHHHHHHHHHH-----HCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4589999999999999765 5655544433222 13689999999999975443321 3343444578999999
Q ss_pred CCCCHHHHHHHHHHH
Q 008468 469 TGQGIQDLETAIMKI 483 (564)
Q Consensus 469 tg~GI~eL~~~L~~~ 483 (564)
+|.|++++++.+.+.
T Consensus 107 tg~gi~eLf~~l~~~ 121 (245)
T TIGR00157 107 NQDGLKELIEALQNR 121 (245)
T ss_pred CchhHHHHHhhhcCC
Confidence 999999999988653
No 347
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.37 E-value=1.1e-06 Score=83.31 Aligned_cols=89 Identities=22% Similarity=0.314 Sum_probs=63.3
Q ss_pred hhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcch-h-hhhcccCCcEEEE
Q 008468 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE-W-NKVGNSFNDHVFT 465 (564)
Q Consensus 388 i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~-~-~~l~~~~~~~i~i 465 (564)
+++.+..+.+||++++|+|++.+....+..+...+ .++|+++|+||+|+.+..... . +.+......++.+
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~i 81 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--------GNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFV 81 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--------cCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEE
Confidence 44556779999999999999887655444333322 247899999999996442221 1 2222333568999
Q ss_pred eccCCCCHHHHHHHHHHHh
Q 008468 466 CAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 466 SAktg~GI~eL~~~L~~~l 484 (564)
||+++.|+++|.+.+.+.+
T Consensus 82 Sa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 82 NAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred ECCCcccHHHHHHHHHHHH
Confidence 9999999999999998865
No 348
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.36 E-value=3.2e-06 Score=91.87 Aligned_cols=160 Identities=16% Similarity=0.125 Sum_probs=100.8
Q ss_pred hhhcCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhh
Q 008468 313 KLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVER 390 (564)
Q Consensus 313 ~~~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~ 390 (564)
+..|+-+++.++|+.|+|||.|+++++|+.... ++...+...+....+...| .-++|-|.+-. +....-+
T Consensus 420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~------ 491 (625)
T KOG1707|consen 420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTS------ 491 (625)
T ss_pred cccceeeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccC------
Confidence 345666999999999999999999999977553 3323333223333333333 23445554322 1111111
Q ss_pred hhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc--cCCcEEEE
Q 008468 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN--SFNDHVFT 465 (564)
Q Consensus 391 ~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~--~~~~~i~i 465 (564)
.. ..||+++++||.+++.++.-...+...... ....|+++|++|+|+.+..+... +++.. ...+.+.+
T Consensus 492 -ke--~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~----~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~ 564 (625)
T KOG1707|consen 492 -KE--AACDVACLVYDSSNPRSFEYLAEVYNKYFD----LYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHI 564 (625)
T ss_pred -cc--ceeeeEEEecccCCchHHHHHHHHHHHhhh----ccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeee
Confidence 11 568999999999988777655443333222 14789999999999976543322 34433 33567888
Q ss_pred eccCCCCHHHHHHHHHHHhhccC
Q 008468 466 CAVTGQGIQDLETAIMKIVGLHQ 488 (564)
Q Consensus 466 SAktg~GI~eL~~~L~~~l~~~~ 488 (564)
|.++... .++|..|..++..+.
T Consensus 565 S~~~~~s-~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 565 SSKTLSS-NELFIKLATMAQYPH 586 (625)
T ss_pred ccCCCCC-chHHHHHHHhhhCCC
Confidence 8885323 899999999887655
No 349
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=2.4e-06 Score=88.02 Aligned_cols=125 Identities=22% Similarity=0.234 Sum_probs=76.3
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcce--eccccCeeEEEEEEE-----------EEEC------C--------------
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAI--VTEIAGTTRDVIEAS-----------VTVC------G-------------- 365 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~--vs~~~gtT~d~~~~~-----------~~~~------g-------------- 365 (564)
.-|.++|+-..||||+++.|+..++.- +.+.|.|.+-..... +.++ +
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 459999999999999999999988642 222233222211111 0000 0
Q ss_pred --------eeeEEEeCCCCCCchhHHHHhh---hhhhhhhhhcCcEEEEEecCCCC-CChhHHHHHHHHHhccccCCCCC
Q 008468 366 --------VPVTLLDTAGIRETDDIVEKIG---VERSEAVALGADVIIMTVSAVDG-WTSEDSELLNRIQSNKKSTESST 433 (564)
Q Consensus 366 --------~~i~LiDTpG~~~~~~~ie~~~---i~~~~~~l~~aD~vl~ViD~s~~-~s~~~~~~l~~l~~~~~~~~~~~ 433 (564)
..+.++||||+-......-+.+ ..-...+..++|.|+++||+..- .+.+..+.+..+.. .+-
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG------~Ed 212 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG------HED 212 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC------Ccc
Confidence 1288999999965432211110 01123357899999999999763 33333455555543 355
Q ss_pred CEEEEEecCCCCCCCc
Q 008468 434 PMILVINKIDCAPSAS 449 (564)
Q Consensus 434 PvIvV~NK~DL~~~~~ 449 (564)
.+-||+||+|.++..+
T Consensus 213 kiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 213 KIRVVLNKADQVDTQQ 228 (532)
T ss_pred eeEEEeccccccCHHH
Confidence 6889999999887644
No 350
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.32 E-value=5.9e-07 Score=90.40 Aligned_cols=56 Identities=36% Similarity=0.401 Sum_probs=42.4
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceecccc-------CeeEEEEEEEEEECCeeeEEEeCCCCCCc
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIA-------GTTRDVIEASVTVCGVPVTLLDTAGIRET 379 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~-------gtT~d~~~~~~~~~g~~i~LiDTpG~~~~ 379 (564)
.++++|.+|||||||+|+|.+.....+.+.+ .||++.....+ ++ -.|+||||++.+
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNEF 184 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCcccc
Confidence 5899999999999999999987654444433 37777765554 33 379999999864
No 351
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.28 E-value=3e-06 Score=81.60 Aligned_cols=86 Identities=26% Similarity=0.244 Sum_probs=59.3
Q ss_pred hhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhc-----c--c--CC
Q 008468 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVG-----N--S--FN 460 (564)
Q Consensus 392 ~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~-----~--~--~~ 460 (564)
..+++++|++++|+|+++........++. . ..++|+++|+||+|+.+...... +.+. . . ..
T Consensus 29 ~~~~~~ad~il~VvD~~~~~~~~~~~l~~----~----~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (190)
T cd01855 29 SSISPKKALVVHVVDIFDFPGSLIPRLRL----F----GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPK 100 (190)
T ss_pred HhcccCCcEEEEEEECccCCCccchhHHH----h----cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcc
Confidence 45588999999999998764333222211 1 13579999999999975433221 2221 1 1 13
Q ss_pred cEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 461 DHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 461 ~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
+++++||++|.|+++|++.|.+.+.
T Consensus 101 ~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 101 DVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 6899999999999999999998763
No 352
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.25 E-value=8.8e-07 Score=94.86 Aligned_cols=58 Identities=31% Similarity=0.452 Sum_probs=51.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIR 377 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~ 377 (564)
.-+.|++||.|||||||+||+|.|.++..|+..||-|..+....++ -.+.|+|+||+.
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls---~~v~LCDCPGLV 370 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS---PSVCLCDCPGLV 370 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC---CCceecCCCCcc
Confidence 3488999999999999999999999998999999999998775544 357899999986
No 353
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.19 E-value=0.00019 Score=75.01 Aligned_cols=151 Identities=18% Similarity=0.232 Sum_probs=80.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC------cceeccccC--------------eeEEEEEEEE---------------
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE------RAIVTEIAG--------------TTRDVIEASV--------------- 361 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~------~~~vs~~~g--------------tT~d~~~~~~--------------- 361 (564)
.+-.|+++|++|+||||++..|.+.- ...+..-+. ....+.....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 45679999999999999998887531 111110000 0011111000
Q ss_pred EECCeeeEEEeCCCCCCchh-HHHHhh-hhhhh--hhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEE
Q 008468 362 TVCGVPVTLLDTAGIRETDD-IVEKIG-VERSE--AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMIL 437 (564)
Q Consensus 362 ~~~g~~i~LiDTpG~~~~~~-~ie~~~-i~~~~--~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIv 437 (564)
...++.++|+||||...... .++... +.+.. ..-...+-+++|+|++.+. ............ -.+.-+
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a~~f~~~------~~~~gi 264 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQAKAFHEA------VGLTGI 264 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHHHHHHhh------CCCCEE
Confidence 11456799999999865332 222221 11110 0113467899999998642 222222222211 124568
Q ss_pred EEecCCCCCCCcchhhhhcccCCcEEEEeccCCCCHHHHH
Q 008468 438 VINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLE 477 (564)
Q Consensus 438 V~NK~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL~ 477 (564)
|+||.|....-............|+..++ +|+++++|.
T Consensus 265 IlTKlD~t~~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 265 ILTKLDGTAKGGVVFAIADELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred EEECCCCCCCccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence 99999965443222222222345777777 788887764
No 354
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.17 E-value=0.00091 Score=72.29 Aligned_cols=155 Identities=20% Similarity=0.254 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh-cCCcEEEEEcCCCCChhHHHHHhhcCCcce-------------ec--------
Q 008468 290 LVMDKIHAMSQDVENALETANYDKLL-QSGLQIAIVGRPNVGKSSLLNAWSKSERAI-------------VT-------- 347 (564)
Q Consensus 290 ~l~~~l~~l~~~l~~ll~~~~~~~~~-~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~-------------vs-------- 347 (564)
.+.+.|-.+.+++-.++..+..+... ..-.+|++||+..+||||.+..+.....-. |+
T Consensus 279 klKkSLIDMYSEVLD~Ls~YD~sYnt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHV 358 (980)
T KOG0447|consen 279 KLKKSLIDMYSEVLDVLSDYDASYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHV 358 (980)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchh
Confidence 34444444555555555555433222 233799999999999999999887543110 00
Q ss_pred --------------------------------cccCeeEEEEEEEEEECC---eeeEEEeCCCCCCc---------hhHH
Q 008468 348 --------------------------------EIAGTTRDVIEASVTVCG---VPVTLLDTAGIRET---------DDIV 383 (564)
Q Consensus 348 --------------------------------~~~gtT~d~~~~~~~~~g---~~i~LiDTpG~~~~---------~~~i 383 (564)
-..|.|...-...++++| ...+++|.||+..+ .+.+
T Consensus 359 AqFrDSsREfDLTKE~DLq~LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I 438 (980)
T KOG0447|consen 359 ALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETI 438 (980)
T ss_pred hhhccccccccccchhHHHHHHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHH
Confidence 001222222222334444 34689999998632 2222
Q ss_pred HHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh
Q 008468 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW 452 (564)
Q Consensus 384 e~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~ 452 (564)
+..++.++.+.++||+|+-- +.-..+....-.+.... .+.+...|+|++|.|+........
T Consensus 439 ----~~msKayM~NPNAIILCIQD--GSVDAERSnVTDLVsq~--DP~GrRTIfVLTKVDlAEknlA~P 499 (980)
T KOG0447|consen 439 ----FSISKAYMQNPNAIILCIQD--GSVDAERSIVTDLVSQM--DPHGRRTIFVLTKVDLAEKNVASP 499 (980)
T ss_pred ----HHHHHHHhcCCCeEEEEecc--CCcchhhhhHHHHHHhc--CCCCCeeEEEEeecchhhhccCCH
Confidence 33467789999999999842 22222222333333332 345678999999999987654433
No 355
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.16 E-value=1.1e-06 Score=82.36 Aligned_cols=59 Identities=27% Similarity=0.296 Sum_probs=34.8
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCccee---ccc----cCeeEEEEEEEEEECCeeeEEEeCCCCCCch
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIV---TEI----AGTTRDVIEASVTVCGVPVTLLDTAGIRETD 380 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~v---s~~----~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~ 380 (564)
-.++++|++|||||||+|+|++.....+ +.. ..||+.... +.+++ ...++||||++++.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l--~~l~~-g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHREL--FPLPD-GGYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEE--EEETT-SEEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeE--EecCC-CcEEEECCCCCccc
Confidence 3689999999999999999999753322 222 223433322 33322 45899999997653
No 356
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.13 E-value=7.6e-06 Score=83.85 Aligned_cols=88 Identities=20% Similarity=0.242 Sum_probs=62.8
Q ss_pred hhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcch-h-hhhcccCCcEEEEec
Q 008468 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE-W-NKVGNSFNDHVFTCA 467 (564)
Q Consensus 390 ~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~-~-~~l~~~~~~~i~iSA 467 (564)
.....+..+|++++|+|+..+.+..+..+.+.+ .++|+|+|+||+|+.+..... + +.+.....+++.+||
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--------~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa 85 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--------GNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINA 85 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--------CCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEEC
Confidence 345668999999999999887766554443332 157999999999996543221 1 223222346899999
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 008468 468 VTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 468 ktg~GI~eL~~~L~~~l~ 485 (564)
+++.|+++|.+.+.+.+.
T Consensus 86 ~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 86 KKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred CCcccHHHHHHHHHHHHH
Confidence 999999999998887653
No 357
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.12 E-value=1.1e-05 Score=83.68 Aligned_cols=154 Identities=21% Similarity=0.285 Sum_probs=97.9
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcc--------eec-----cccCeeEEEEEEEEEECC-----------------
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERA--------IVT-----EIAGTTRDVIEASVTVCG----------------- 365 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~--------~vs-----~~~gtT~d~~~~~~~~~g----------------- 365 (564)
+..+.|+..|+.+.|||||+-.|...... ... -..|-|-+.....+-+++
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 45578999999999999999988753311 000 012233333333333322
Q ss_pred ------eeeEEEeCCCCCCch-hHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEE
Q 008468 366 ------VPVTLLDTAGIRETD-DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILV 438 (564)
Q Consensus 366 ------~~i~LiDTpG~~~~~-~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV 438 (564)
.-+.++||.|.+..- ..+.. ..-++.|-.++++-++++.+....+.+--.... +.|+|+|
T Consensus 195 vv~~aDklVsfVDtvGHEpwLrTtirG-------L~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~------~lPviVv 261 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPWLRTTIRG-------LLGQKVDYGLLVVAADDGVTKMTKEHLGIALAM------ELPVIVV 261 (527)
T ss_pred hhhhcccEEEEEecCCccHHHHHHHHH-------HhccccceEEEEEEccCCcchhhhHhhhhhhhh------cCCEEEE
Confidence 226789999985421 11110 123678999999999998887776666554433 6899999
Q ss_pred EecCCCCCCCcchh--hhh-----------------------------cccCCcEEEEeccCCCCHHHHHHHHHH
Q 008468 439 INKIDCAPSASNEW--NKV-----------------------------GNSFNDHVFTCAVTGQGIQDLETAIMK 482 (564)
Q Consensus 439 ~NK~DL~~~~~~~~--~~l-----------------------------~~~~~~~i~iSAktg~GI~eL~~~L~~ 482 (564)
++|+|+.+.+.... +++ .+...|+|.+|+.+|+|++-|.+.+..
T Consensus 262 vTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~ 336 (527)
T COG5258 262 VTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL 336 (527)
T ss_pred EEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence 99999987654321 110 011357899999999999776665543
No 358
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.12 E-value=6.8e-06 Score=76.57 Aligned_cols=81 Identities=28% Similarity=0.380 Sum_probs=55.4
Q ss_pred cEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcch-h-hhhccc-CCcEEEEeccCCCCHHH
Q 008468 399 DVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE-W-NKVGNS-FNDHVFTCAVTGQGIQD 475 (564)
Q Consensus 399 D~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~-~-~~l~~~-~~~~i~iSAktg~GI~e 475 (564)
|++++|+|+.++.+..+..+...... ..++|+|+|+||+|+.+..... + ..+... ...++.+||++|.|+++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~-----~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~ 75 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIK-----EKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEK 75 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHh-----cCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhh
Confidence 78999999988766554433211111 2368999999999997543221 1 223222 34679999999999999
Q ss_pred HHHHHHHHh
Q 008468 476 LETAIMKIV 484 (564)
Q Consensus 476 L~~~L~~~l 484 (564)
|++.+.+..
T Consensus 76 L~~~i~~~~ 84 (155)
T cd01849 76 KESAFTKQT 84 (155)
T ss_pred HHHHHHHHh
Confidence 999987653
No 359
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.11 E-value=1.7e-06 Score=76.33 Aligned_cols=114 Identities=13% Similarity=0.042 Sum_probs=69.2
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccC-eeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAG-TTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALG 397 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~g-tT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~ 397 (564)
+||+++|..|+|||+|+.++....+. ..+. .|.. +..+| ..+.+.
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~---~~~~~~t~~------------~~~~~-------------------~~~~~s 46 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFD---YVPTVFTIG------------IDVYD-------------------PTSYES 46 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCcc---ccCceehhh------------hhhcc-------------------ccccCC
Confidence 48999999999999999999665532 1111 1111 11111 123567
Q ss_pred CcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcccCCcEEEEeccCCCCHH
Q 008468 398 ADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQ 474 (564)
Q Consensus 398 aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~ 474 (564)
++.++.|++.....+.... |...... ....+.|.++++||.|+....... ++. ...++++|+++|.|+.
T Consensus 47 ~~~~~~v~~~~~~~s~~~~--~~~~i~~--~~k~dl~~~~~~nk~dl~~~~~~~-~~~---~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 47 FDVVLQCWRVDDRDSADNK--NVPEVLV--GNKSDLPILVGGNRDVLEEERQVA-TEE---GLEFAETSAKTPEEGE 115 (124)
T ss_pred CCEEEEEEEccCHHHHHHH--hHHHHHh--cCCCCCcEEEEeechhhHhhCcCC-HHH---HHHHHHHhCCCcchhh
Confidence 8899988988876555433 3222221 123467899999999985432221 111 1245678999999884
No 360
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.09 E-value=8.2e-06 Score=82.94 Aligned_cols=64 Identities=42% Similarity=0.502 Sum_probs=52.4
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC-----CcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCc
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS-----ERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRET 379 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~-----~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~ 379 (564)
..+++|.|+|-||+|||||+|++... ..+.+...||.|+.+.+..--.+...+.++||||+...
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P 209 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVP 209 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCC
Confidence 45689999999999999999998642 34568899999999877555556778999999999754
No 361
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.09 E-value=8.2e-06 Score=74.83 Aligned_cols=78 Identities=17% Similarity=0.129 Sum_probs=54.5
Q ss_pred hhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcccCCcEEEEecc
Q 008468 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGNSFNDHVFTCAV 468 (564)
Q Consensus 391 ~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~~~~~~i~iSAk 468 (564)
....+..+|++++|+|+.++.+..+..+.+.+... ..++|+++|+||+|+.+...... +.+.....+++++||+
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~ 80 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSAL 80 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEec
Confidence 34568999999999999988776655554444332 13689999999999965433221 2233344578999999
Q ss_pred CCCC
Q 008468 469 TGQG 472 (564)
Q Consensus 469 tg~G 472 (564)
++.+
T Consensus 81 ~~~~ 84 (141)
T cd01857 81 KENA 84 (141)
T ss_pred CCCc
Confidence 8875
No 362
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.08 E-value=5.7e-05 Score=77.24 Aligned_cols=102 Identities=18% Similarity=0.203 Sum_probs=56.9
Q ss_pred CCeeeEEEeCCCCCCchhH-HHHhhhhhhhhhh-----hcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEE
Q 008468 364 CGVPVTLLDTAGIRETDDI-VEKIGVERSEAVA-----LGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMIL 437 (564)
Q Consensus 364 ~g~~i~LiDTpG~~~~~~~-ie~~~i~~~~~~l-----~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIv 437 (564)
.++.+.|+||||....+.. ++++. ...... ..+|.+++|+|++.+ .++........+.. .+.-+
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~--~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~~~------~~~g~ 222 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELK--KIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNEAV------GLTGI 222 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHH--HHHHHHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHhhC------CCCEE
Confidence 4577899999998654322 22111 111111 238999999999743 33333333332211 13568
Q ss_pred EEecCCCCCCCcchhhhhcccCCcEEEEeccCCCCHHHHH
Q 008468 438 VINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLE 477 (564)
Q Consensus 438 V~NK~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL~ 477 (564)
|+||.|.................|+.+++ +|++++++.
T Consensus 223 IlTKlDe~~~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 223 ILTKLDGTAKGGIILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred EEEccCCCCCccHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 99999986554332221122235677777 788887764
No 363
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=1.1e-05 Score=89.70 Aligned_cols=112 Identities=27% Similarity=0.310 Sum_probs=84.3
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCe---------------eEEEEEEEEEECCeeeEEEeCCCCCCchhHH
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGT---------------TRDVIEASVTVCGVPVTLLDTAGIRETDDIV 383 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gt---------------T~d~~~~~~~~~g~~i~LiDTpG~~~~~~~i 383 (564)
-+++++-+..-|||||...|+..+..+.+...|. |..........+++.++++|+||+.++...+
T Consensus 10 rn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sev 89 (887)
T KOG0467|consen 10 RNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEV 89 (887)
T ss_pred eEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhh
Confidence 3689999999999999999988765444444443 3222222233477889999999999987665
Q ss_pred HHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCC
Q 008468 384 EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDC 444 (564)
Q Consensus 384 e~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL 444 (564)
. .+.+-+|..++++|+..+...+....+++.... +...++|+||+|.
T Consensus 90 s--------sas~l~d~alvlvdvvegv~~qt~~vlrq~~~~------~~~~~lvinkidr 136 (887)
T KOG0467|consen 90 S--------SASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE------GLKPILVINKIDR 136 (887)
T ss_pred h--------hhhhhcCCcEEEEeeccccchhHHHHHHHHHHc------cCceEEEEehhhh
Confidence 4 235678999999999999999988888865543 4567899999993
No 364
>PRK00098 GTPase RsgA; Reviewed
Probab=98.07 E-value=4.9e-06 Score=86.22 Aligned_cols=58 Identities=33% Similarity=0.349 Sum_probs=41.1
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccC-------eeEEEEEEEEEECCeeeEEEeCCCCCCc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAG-------TTRDVIEASVTVCGVPVTLLDTAGIRET 379 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~g-------tT~d~~~~~~~~~g~~i~LiDTpG~~~~ 379 (564)
-.++++|++|||||||+|+|++.....+..++. ||+......+ ++ ...++||||++.+
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~--~~-~~~~~DtpG~~~~ 229 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDL--PG-GGLLIDTPGFSSF 229 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEc--CC-CcEEEECCCcCcc
Confidence 468999999999999999999876544444433 5654433332 22 2488999999753
No 365
>PRK14974 cell division protein FtsY; Provisional
Probab=98.06 E-value=2.5e-05 Score=81.96 Aligned_cols=101 Identities=22% Similarity=0.301 Sum_probs=57.7
Q ss_pred CeeeEEEeCCCCCCch-hHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCC
Q 008468 365 GVPVTLLDTAGIRETD-DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443 (564)
Q Consensus 365 g~~i~LiDTpG~~~~~-~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~D 443 (564)
+..++|+||+|..... +.++.+. .. ......|.+++|+|+..+. +..+........ -..--+|+||.|
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~--~i-~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~------~~~~giIlTKlD 290 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELK--KI-VRVTKPDLVIFVGDALAGN--DAVEQAREFNEA------VGIDGVILTKVD 290 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHH--HH-HHhhCCceEEEeeccccch--hHHHHHHHHHhc------CCCCEEEEeeec
Confidence 4568999999987532 3333221 11 1134578999999997642 222223332221 113467899999
Q ss_pred CCCCCcchhhhhcccCCcEEEEeccCCCCHHHHHH
Q 008468 444 CAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLET 478 (564)
Q Consensus 444 L~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL~~ 478 (564)
....-............|+.+++ +|++++++..
T Consensus 291 ~~~~~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 291 ADAKGGAALSIAYVIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred CCCCccHHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence 86544332222222235777777 7899887643
No 366
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.04 E-value=4.4e-06 Score=85.31 Aligned_cols=58 Identities=31% Similarity=0.362 Sum_probs=40.7
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccc-------cCeeEEEEEEEEEECCeeeEEEeCCCCCCch
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEI-------AGTTRDVIEASVTVCGVPVTLLDTAGIRETD 380 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~-------~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~ 380 (564)
..+++|.+|||||||+|+|.......+.++ ..||+......+.-+| .|+||||++++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 578999999999999999998543333322 3466655554443344 689999998654
No 367
>PRK12289 GTPase RsgA; Reviewed
Probab=98.00 E-value=1.7e-05 Score=83.96 Aligned_cols=85 Identities=15% Similarity=0.224 Sum_probs=58.3
Q ss_pred hhhhcCcEEEEEecCCCCC-ChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcccCCcEEEEecc
Q 008468 393 AVALGADVIIMTVSAVDGW-TSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGNSFNDHVFTCAV 468 (564)
Q Consensus 393 ~~l~~aD~vl~ViD~s~~~-s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~~~~~~i~iSAk 468 (564)
..+.++|.+++|+|+.++. ...... ++.... ..++|+++|+||+||.+...... +.+.....+++++||+
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~------~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~ 158 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKAE------STGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVE 158 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH------HCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcC
Confidence 4578999999999998754 222222 222111 23689999999999975432211 2333334578999999
Q ss_pred CCCCHHHHHHHHHHH
Q 008468 469 TGQGIQDLETAIMKI 483 (564)
Q Consensus 469 tg~GI~eL~~~L~~~ 483 (564)
+|.|+++|++.+...
T Consensus 159 tg~GI~eL~~~L~~k 173 (352)
T PRK12289 159 TGIGLEALLEQLRNK 173 (352)
T ss_pred CCCCHHHHhhhhccc
Confidence 999999999988754
No 368
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.00 E-value=7.7e-06 Score=84.27 Aligned_cols=59 Identities=32% Similarity=0.304 Sum_probs=40.8
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccc-------cCeeEEEEEEEEEECCeeeEEEeCCCCCCch
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEI-------AGTTRDVIEASVTVCGVPVTLLDTAGIRETD 380 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~-------~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~ 380 (564)
-.++++|++|||||||+|.|++.....+... ..||++.....+..+ ..++||||+.++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 3699999999999999999999765433322 236665544333222 3789999997643
No 369
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.99 E-value=4.4e-06 Score=87.18 Aligned_cols=71 Identities=31% Similarity=0.508 Sum_probs=57.5
Q ss_pred HHHHHhhhhhhhcCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCC
Q 008468 304 NALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIR 377 (564)
Q Consensus 304 ~ll~~~~~~~~~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~ 377 (564)
.++.++.+...++.-++|+|+|.|||||||+||+|.......|...||.|+...+.. -+..+.|+|.||+.
T Consensus 238 ~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~---Ldk~i~llDsPgiv 308 (435)
T KOG2484|consen 238 KVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVK---LDKKIRLLDSPGIV 308 (435)
T ss_pred HHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhhee---ccCCceeccCCcee
Confidence 334444444456777999999999999999999999999888999999998765533 35678999999986
No 370
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.95 E-value=2.5e-05 Score=80.47 Aligned_cols=87 Identities=23% Similarity=0.278 Sum_probs=61.5
Q ss_pred hhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcch-h-hhhcccCCcEEEEec
Q 008468 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE-W-NKVGNSFNDHVFTCA 467 (564)
Q Consensus 390 ~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~-~-~~l~~~~~~~i~iSA 467 (564)
.....+..+|++++|+|+..+.+..+..+...+ .++|+++|+||+|+.+..... + +.+.+...+++.+||
T Consensus 17 ~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~--------~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa 88 (287)
T PRK09563 17 EIKENLKLVDVVIEVLDARIPLSSENPMIDKII--------GNKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINA 88 (287)
T ss_pred HHHHHhhhCCEEEEEEECCCCCCCCChhHHHHh--------CCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEEC
Confidence 345668999999999999887766554332222 157999999999996542111 1 222222346899999
Q ss_pred cCCCCHHHHHHHHHHHh
Q 008468 468 VTGQGIQDLETAIMKIV 484 (564)
Q Consensus 468 ktg~GI~eL~~~L~~~l 484 (564)
+++.|+++|.+.+.+.+
T Consensus 89 ~~~~gi~~L~~~l~~~l 105 (287)
T PRK09563 89 KKGQGVKKILKAAKKLL 105 (287)
T ss_pred CCcccHHHHHHHHHHHH
Confidence 99999999999887765
No 371
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.94 E-value=4.2e-05 Score=71.73 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=43.1
Q ss_pred eeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChh-HHHHH-HHHHhccccCCCCCCEEEEEecCC
Q 008468 366 VPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSE-DSELL-NRIQSNKKSTESSTPMILVINKID 443 (564)
Q Consensus 366 ~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~-~~~~l-~~l~~~~~~~~~~~PvIvV~NK~D 443 (564)
....++||+|..+.....+.+............|.+++++|+.+-.... ....+ .++. .--++|+||+|
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~---------~ad~ivlnk~d 157 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIA---------FADRILLNKTD 157 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHH---------HCCEEEEeccc
Confidence 4568999999998776665543333344466789999999986522111 11111 2222 12367999999
Q ss_pred C
Q 008468 444 C 444 (564)
Q Consensus 444 L 444 (564)
+
T Consensus 158 l 158 (158)
T cd03112 158 L 158 (158)
T ss_pred C
Confidence 6
No 372
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.88 E-value=3.2e-05 Score=79.76 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=58.5
Q ss_pred hhhcCcEEEEEecCCCCC-ChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcccCCcEEEEeccCC
Q 008468 394 VALGADVIIMTVSAVDGW-TSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGNSFNDHVFTCAVTG 470 (564)
Q Consensus 394 ~l~~aD~vl~ViD~s~~~-s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~~~~~~i~iSAktg 470 (564)
.+.++|++++|+|+.++. +....+.|-.... ..++|+++|+||+||.+...... ..+.....+++++||+++
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~-----~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g 149 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAE-----AAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTG 149 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHH-----HcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 478999999999999876 5444433222221 13689999999999976522111 112223457899999999
Q ss_pred CCHHHHHHHHHH
Q 008468 471 QGIQDLETAIMK 482 (564)
Q Consensus 471 ~GI~eL~~~L~~ 482 (564)
.|+++|+..|..
T Consensus 150 ~gi~~L~~~L~~ 161 (287)
T cd01854 150 EGLDELREYLKG 161 (287)
T ss_pred ccHHHHHhhhcc
Confidence 999999988865
No 373
>PRK00098 GTPase RsgA; Reviewed
Probab=97.87 E-value=3e-05 Score=80.38 Aligned_cols=84 Identities=19% Similarity=0.199 Sum_probs=56.4
Q ss_pred hhhcCcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCCcch--h-hhhcccCCcEEEEeccC
Q 008468 394 VALGADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE--W-NKVGNSFNDHVFTCAVT 469 (564)
Q Consensus 394 ~l~~aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~--~-~~l~~~~~~~i~iSAkt 469 (564)
.+.++|++++|+|+.++...... +.|..... ..++|+++|+||+|+....... . +.+.....+++++||++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~-----~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~ 151 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAE-----ANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKE 151 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHH-----HCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 46899999999999876544332 22211111 1368999999999996332211 1 22222335789999999
Q ss_pred CCCHHHHHHHHHH
Q 008468 470 GQGIQDLETAIMK 482 (564)
Q Consensus 470 g~GI~eL~~~L~~ 482 (564)
|.|+++|++.+..
T Consensus 152 g~gi~~L~~~l~g 164 (298)
T PRK00098 152 GEGLDELKPLLAG 164 (298)
T ss_pred CccHHHHHhhccC
Confidence 9999999988754
No 374
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=5.2e-05 Score=81.78 Aligned_cols=111 Identities=27% Similarity=0.421 Sum_probs=75.0
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEE---CCeeeEEEeCCCCCCchhHHHHhhhhhh
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTV---CGVPVTLLDTAGIRETDDIVEKIGVERS 391 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~---~g~~i~LiDTpG~~~~~~~ie~~~i~~~ 391 (564)
...++-|+++|+||+|||||+..|..+-.. .|.+.+.+.+++ ....++++.+|. +...++
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk-------~ti~~i~GPiTvvsgK~RRiTflEcp~--Dl~~mi-------- 128 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTK-------QTIDEIRGPITVVSGKTRRITFLECPS--DLHQMI-------- 128 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHHH-------hhhhccCCceEEeecceeEEEEEeChH--HHHHHH--------
Confidence 345678899999999999999998865311 122222222222 335688888883 222232
Q ss_pred hhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCC-EEEEEecCCCCCCCc
Q 008468 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTP-MILVINKIDCAPSAS 449 (564)
Q Consensus 392 ~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~P-vIvV~NK~DL~~~~~ 449 (564)
...+-||+|++++|.+.++.-+..+.++.+... +.| ++-|++..|+.....
T Consensus 129 -DvaKIaDLVlLlIdgnfGfEMETmEFLnil~~H------GmPrvlgV~ThlDlfk~~s 180 (1077)
T COG5192 129 -DVAKIADLVLLLIDGNFGFEMETMEFLNILISH------GMPRVLGVVTHLDLFKNPS 180 (1077)
T ss_pred -hHHHhhheeEEEeccccCceehHHHHHHHHhhc------CCCceEEEEeecccccChH
Confidence 234568999999999998877777877766543 445 778999999976543
No 375
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=5.6e-05 Score=78.22 Aligned_cols=149 Identities=23% Similarity=0.309 Sum_probs=91.6
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcc------eec------c-ccCeeEE---------EEEEEEEEC------------
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERA------IVT------E-IAGTTRD---------VIEASVTVC------------ 364 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~------~vs------~-~~gtT~d---------~~~~~~~~~------------ 364 (564)
++|+++|.-.+|||||+-.|+..+.. ... + ..|.|.. .....+++.
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~S 247 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKS 247 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhh
Confidence 79999999999999999988764421 000 0 0111111 111111121
Q ss_pred CeeeEEEeCCCCCCchhH-HHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCC
Q 008468 365 GVPVTLLDTAGIRETDDI-VEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443 (564)
Q Consensus 365 g~~i~LiDTpG~~~~~~~-ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~D 443 (564)
..-++++|.+|...+... +.. ..-...|..++|+.+..+......+.+-.+... ++|++++++|+|
T Consensus 248 SKlvTfiDLAGh~kY~~TTi~g-------LtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL------~iPfFvlvtK~D 314 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAKYQKTTIHG-------LTGYTPHFACLVVSADRGITWTTREHLGLIAAL------NIPFFVLVTKMD 314 (591)
T ss_pred cceEEEeecccchhhheeeeee-------cccCCCceEEEEEEcCCCCccccHHHHHHHHHh------CCCeEEEEEeec
Confidence 134789999998654211 000 012347899999999888766666555544432 789999999999
Q ss_pred CCCCCcchh--hhh------------------------------cccCCcEEEEeccCCCCHHHHHHHH
Q 008468 444 CAPSASNEW--NKV------------------------------GNSFNDHVFTCAVTGQGIQDLETAI 480 (564)
Q Consensus 444 L~~~~~~~~--~~l------------------------------~~~~~~~i~iSAktg~GI~eL~~~L 480 (564)
+.+....+. +++ ..+..|+|.+|+.+|+|++-|...+
T Consensus 315 l~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 315 LVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred cccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 987643221 110 1133578999999999987665544
No 376
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.78 E-value=1e-05 Score=84.18 Aligned_cols=61 Identities=28% Similarity=0.388 Sum_probs=48.5
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCC
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRE 378 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~ 378 (564)
.+..+.|+++|.||+||||++|.|-..+++.|.++||-|.-....+ --..|.|+|+||+.-
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYIt---LmkrIfLIDcPGvVy 364 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYIT---LMKRIFLIDCPGVVY 364 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHH---HHhceeEecCCCccC
Confidence 3556899999999999999999999999999999999875322111 123578999999863
No 377
>PRK12288 GTPase RsgA; Reviewed
Probab=97.74 E-value=0.00012 Score=77.44 Aligned_cols=84 Identities=18% Similarity=0.207 Sum_probs=59.7
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-----hhhcccCCcEEEEeccC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-----NKVGNSFNDHVFTCAVT 469 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-----~~l~~~~~~~i~iSAkt 469 (564)
..++|.+++|++.....++...+.|..... ..++|+++|+||+||.+...... +.+.....+++++||++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~-----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~t 192 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE-----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHT 192 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH-----hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 577999999999887666665544432222 23689999999999976432111 22223335789999999
Q ss_pred CCCHHHHHHHHHHH
Q 008468 470 GQGIQDLETAIMKI 483 (564)
Q Consensus 470 g~GI~eL~~~L~~~ 483 (564)
+.|+++|++.|...
T Consensus 193 g~GideL~~~L~~k 206 (347)
T PRK12288 193 GEGLEELEAALTGR 206 (347)
T ss_pred CcCHHHHHHHHhhC
Confidence 99999999998764
No 378
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.0018 Score=69.01 Aligned_cols=129 Identities=18% Similarity=0.193 Sum_probs=65.0
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCccee--ccccCeeEEEE----------------------EEE-------EEEC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIV--TEIAGTTRDVI----------------------EAS-------VTVC 364 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~v--s~~~gtT~d~~----------------------~~~-------~~~~ 364 (564)
..+-.++++|++||||||++..|...-...- ....-.|.|.. ... ..+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 4456799999999999999999975321000 00000111111 000 1124
Q ss_pred CeeeEEEeCCCCCCchhHH-HHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhcccc-CCC-CCCEEEEEec
Q 008468 365 GVPVTLLDTAGIRETDDIV-EKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKS-TES-STPMILVINK 441 (564)
Q Consensus 365 g~~i~LiDTpG~~~~~~~i-e~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~-~~~-~~PvIvV~NK 441 (564)
+..++|+||+|....+... +.+. .......++-.++|++++.+....+ +.+......... ... ...-=+|+||
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La---~L~~~~~~~~~lLVLsAts~~~~l~-evi~~f~~~~~~p~~~~~~~~~~I~TK 290 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIA---MLHGADTPVQRLLLLNATSHGDTLN-EVVQAYRSAAGQPKAALPDLAGCILTK 290 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHH---HHhccCCCCeEEEEecCccChHHHH-HHHHHHHHhhcccccccCCCCEEEEec
Confidence 5678999999987544332 2211 1111233456789999887532221 222222211000 000 0123478899
Q ss_pred CCCCCCC
Q 008468 442 IDCAPSA 448 (564)
Q Consensus 442 ~DL~~~~ 448 (564)
.|-...-
T Consensus 291 lDEt~~~ 297 (374)
T PRK14722 291 LDEASNL 297 (374)
T ss_pred cccCCCc
Confidence 9976543
No 379
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.0012 Score=69.94 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhc
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
.+-.|+++|++||||||++..|..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999998874
No 380
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.65 E-value=0.00087 Score=68.57 Aligned_cols=164 Identities=18% Similarity=0.160 Sum_probs=90.8
Q ss_pred hhcCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEEC----CeeeEEEeCCCCCCchhHHHHhhhh
Q 008468 314 LLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC----GVPVTLLDTAGIRETDDIVEKIGVE 389 (564)
Q Consensus 314 ~~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~----g~~i~LiDTpG~~~~~~~ie~~~i~ 389 (564)
.+..+-+|.++|+.++|||||+..|-+.+- ..+|....+..-.+.-+ -.++.+|=.-|---......
T Consensus 48 klpsgk~VlvlGdn~sGKtsLi~klqg~e~----~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk----- 118 (473)
T KOG3905|consen 48 KLPSGKNVLVLGDNGSGKTSLISKLQGSET----VKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLK----- 118 (473)
T ss_pred cCCCCCeEEEEccCCCchhHHHHHhhcccc----cCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHh-----
Confidence 345778999999999999999999998762 22333333322222111 12233343334211111110
Q ss_pred hhhhhhhcC-cEEEEEecCCCCCChhH-HHHHHHHH--------------------------hcccc-------------
Q 008468 390 RSEAVALGA-DVIIMTVSAVDGWTSED-SELLNRIQ--------------------------SNKKS------------- 428 (564)
Q Consensus 390 ~~~~~l~~a-D~vl~ViD~s~~~s~~~-~~~l~~l~--------------------------~~~~~------------- 428 (564)
-+...-.-+ -++|++.|.++++..-+ ++.|..+. .....
T Consensus 119 ~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t 198 (473)
T KOG3905|consen 119 FALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTT 198 (473)
T ss_pred hcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccc
Confidence 111111122 36888999999865322 22222111 10000
Q ss_pred --------------------CCCCCCEEEEEecCCCCCCCcchh--------------hhhc-ccCCcEEEEeccCCCCH
Q 008468 429 --------------------TESSTPMILVINKIDCAPSASNEW--------------NKVG-NSFNDHVFTCAVTGQGI 473 (564)
Q Consensus 429 --------------------~~~~~PvIvV~NK~DL~~~~~~~~--------------~~l~-~~~~~~i~iSAktg~GI 473 (564)
...++|++||++|||...--+.+. ..|+ ......|.+|+|...|+
T Consensus 199 ~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNi 278 (473)
T KOG3905|consen 199 VVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNI 278 (473)
T ss_pred cccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccch
Confidence 024679999999999843211110 1111 12246799999999999
Q ss_pred HHHHHHHHHHhhc
Q 008468 474 QDLETAIMKIVGL 486 (564)
Q Consensus 474 ~eL~~~L~~~l~~ 486 (564)
+-|..+|......
T Consensus 279 dllyKYivhr~yG 291 (473)
T KOG3905|consen 279 DLLYKYIVHRSYG 291 (473)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999987643
No 381
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=0.00082 Score=72.59 Aligned_cols=148 Identities=20% Similarity=0.229 Sum_probs=73.5
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCc-----ceecc-------------------ccCeeEEEEEEE-------EEEC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSER-----AIVTE-------------------IAGTTRDVIEAS-------VTVC 364 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~-----~~vs~-------------------~~gtT~d~~~~~-------~~~~ 364 (564)
..+-+|+++|++||||||++..|.+... ..+.- .-+......... ..+.
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~ 268 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR 268 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc
Confidence 4566899999999999999998876311 00000 000000000000 1123
Q ss_pred CeeeEEEeCCCCCCchhH-HHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCC
Q 008468 365 GVPVTLLDTAGIRETDDI-VEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443 (564)
Q Consensus 365 g~~i~LiDTpG~~~~~~~-ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~D 443 (564)
+..+.++||+|....... .+... ........+-.++|+|++.. ..+.. .+...+.. --.-=+++||.|
T Consensus 269 ~~d~VLIDTaGrsqrd~~~~~~l~---~l~~~~~~~~~~LVl~at~~--~~~~~---~~~~~f~~---~~~~~~I~TKlD 337 (420)
T PRK14721 269 GKHMVLIDTVGMSQRDQMLAEQIA---MLSQCGTQVKHLLLLNATSS--GDTLD---EVISAYQG---HGIHGCIITKVD 337 (420)
T ss_pred CCCEEEecCCCCCcchHHHHHHHH---HHhccCCCceEEEEEcCCCC--HHHHH---HHHHHhcC---CCCCEEEEEeee
Confidence 456899999998754332 22221 01112234567889998753 23332 22222111 112357899999
Q ss_pred CCCCCcchhhhhcccCCcEEEEeccCCCCH-HHH
Q 008468 444 CAPSASNEWNKVGNSFNDHVFTCAVTGQGI-QDL 476 (564)
Q Consensus 444 L~~~~~~~~~~l~~~~~~~i~iSAktg~GI-~eL 476 (564)
-.........-......++..++ +|.+| +++
T Consensus 338 Et~~~G~~l~~~~~~~lPi~yvt--~Gq~VP~Dl 369 (420)
T PRK14721 338 EAASLGIALDAVIRRKLVLHYVT--NGQKVPEDL 369 (420)
T ss_pred CCCCccHHHHHHHHhCCCEEEEE--CCCCchhhh
Confidence 76544332222222223444444 46666 444
No 382
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.0011 Score=73.20 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=22.2
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhc
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
...+-.|+|+|++|+||||++..|..
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34566899999999999999988875
No 383
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.53 E-value=0.0013 Score=71.59 Aligned_cols=167 Identities=17% Similarity=0.218 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHhhhhh-hhcCCcEEEEEcCCCCChhHHHHHhhcC------Ccceecc--c-cC-----------eeE
Q 008468 296 HAMSQDVENALETANYDK-LLQSGLQIAIVGRPNVGKSSLLNAWSKS------ERAIVTE--I-AG-----------TTR 354 (564)
Q Consensus 296 ~~l~~~l~~ll~~~~~~~-~~~~~ikI~IvG~~nvGKSSLlN~L~~~------~~~~vs~--~-~g-----------tT~ 354 (564)
+.+.+++..++....... ....+..|+++|.+|+||||++-.|... ....++. + ++ ...
T Consensus 72 ~~v~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 72 KIVYEELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred HHHHHHHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 444555555543321111 1134577999999999999999877531 1111110 0 00 000
Q ss_pred EEEEEEE-------------EECCeeeEEEeCCCCCCch-hHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHH
Q 008468 355 DVIEASV-------------TVCGVPVTLLDTAGIRETD-DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLN 420 (564)
Q Consensus 355 d~~~~~~-------------~~~g~~i~LiDTpG~~~~~-~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~ 420 (564)
.+..... ...+..++|+||||..... ...+++. ....+..+|.+++|+|++.+. +..+...
T Consensus 152 p~~~~~~~~d~~~i~~~al~~~~~~DvVIIDTAGr~~~d~~lm~El~---~l~~~~~pdevlLVvda~~gq--~av~~a~ 226 (437)
T PRK00771 152 PFYGDPDNKDAVEIAKEGLEKFKKADVIIVDTAGRHALEEDLIEEMK---EIKEAVKPDEVLLVIDATIGQ--QAKNQAK 226 (437)
T ss_pred cEEecCCccCHHHHHHHHHHHhhcCCEEEEECCCcccchHHHHHHHH---HHHHHhcccceeEEEeccccH--HHHHHHH
Confidence 0110000 0123468999999976543 2333221 112245689999999987652 2222222
Q ss_pred HHHhccccCCCCC-CEEEEEecCCCCCCCcchhhhhcccCCcEEEEeccCCCCHHHH
Q 008468 421 RIQSNKKSTESST-PMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDL 476 (564)
Q Consensus 421 ~l~~~~~~~~~~~-PvIvV~NK~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL 476 (564)
.... .. ..-+|+||.|-...-.....-......|+.+++. |+.+++|
T Consensus 227 ~F~~-------~l~i~gvIlTKlD~~a~~G~~ls~~~~~~~Pi~fig~--Ge~v~Dl 274 (437)
T PRK00771 227 AFHE-------AVGIGGIIITKLDGTAKGGGALSAVAETGAPIKFIGT--GEKIDDL 274 (437)
T ss_pred HHHh-------cCCCCEEEEecccCCCcccHHHHHHHHHCcCEEEEec--CCCcccC
Confidence 2221 12 2357889999754332221111112235555543 5555554
No 384
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.00049 Score=70.82 Aligned_cols=121 Identities=20% Similarity=0.231 Sum_probs=80.0
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC----Cc-----------ceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCch
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS----ER-----------AIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD 380 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~----~~-----------~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~ 380 (564)
+..++|+-+|+..-|||||..+++.- .. +.-....|.|.......++-....+-=+|+||+-++
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY- 130 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY- 130 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH-
Confidence 34489999999999999999988641 11 111223466666554444445555667999998654
Q ss_pred hHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCc
Q 008468 381 DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449 (564)
Q Consensus 381 ~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~ 449 (564)
+..+ ..-..+-|+.|+|+.++++..++..+.+-...+. + =..+++.+||.|+++..+
T Consensus 131 --IKNM-----ItGaaqMDGaILVVaatDG~MPQTrEHlLLArQV----G-V~~ivvfiNKvD~V~d~e 187 (449)
T KOG0460|consen 131 --IKNM-----ITGAAQMDGAILVVAATDGPMPQTREHLLLARQV----G-VKHIVVFINKVDLVDDPE 187 (449)
T ss_pred --HHHh-----hcCccccCceEEEEEcCCCCCcchHHHHHHHHHc----C-CceEEEEEecccccCCHH
Confidence 2222 1123456999999999999888887655433322 1 134788999999996544
No 385
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.51 E-value=0.005 Score=57.47 Aligned_cols=154 Identities=20% Similarity=0.290 Sum_probs=81.5
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCC-CCC--------------C
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTA-GIR--------------E 378 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTp-G~~--------------~ 378 (564)
+..+||.|.|+|||||||++..+...-.. ....-..++...+.-+|. .+.++|.. |-. .
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~----~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGk 78 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLRE----KGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGK 78 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHh----cCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccce
Confidence 34589999999999999999988753211 001111222333333332 24555655 211 0
Q ss_pred ---chhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhh
Q 008468 379 ---TDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKV 455 (564)
Q Consensus 379 ---~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l 455 (564)
.-+..+...+...+.++..||++++ |---+.......+...+.... ..++|+|.++.+-+..+ ..+++
T Consensus 79 Y~V~v~~le~i~~~al~rA~~~aDvIII--DEIGpMElks~~f~~~ve~vl---~~~kpliatlHrrsr~P----~v~~i 149 (179)
T COG1618 79 YGVNVEGLEEIAIPALRRALEEADVIII--DEIGPMELKSKKFREAVEEVL---KSGKPLIATLHRRSRHP----LVQRI 149 (179)
T ss_pred EEeeHHHHHHHhHHHHHHHhhcCCEEEE--ecccchhhccHHHHHHHHHHh---cCCCcEEEEEecccCCh----HHHHh
Confidence 1133444445545556677898764 543333333222222222221 24688998888765421 11344
Q ss_pred cccCCcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 456 GNSFNDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 456 ~~~~~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
.....-++. .+-.|-+.++..+...+.
T Consensus 150 k~~~~v~v~---lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 150 KKLGGVYVF---LTPENRNRILNEILSVLK 176 (179)
T ss_pred hhcCCEEEE---EccchhhHHHHHHHHHhc
Confidence 444433343 566666688888777664
No 386
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.51 E-value=0.00085 Score=73.51 Aligned_cols=162 Identities=14% Similarity=0.197 Sum_probs=90.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEEC---C-eeeEEEeCCCCCCchhHHHHhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC---G-VPVTLLDTAGIRETDDIVEKIGVERSE 392 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~---g-~~i~LiDTpG~~~~~~~ie~~~i~~~~ 392 (564)
.+-.|+|+|..++|||||+.+|.+.+. ..++...++....+.-+ . ..+.+|-..|-..+..++. +.+ ..
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e~----~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk-~~l--t~ 96 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIED----PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLK-FAL--TP 96 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccCC----CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhc-ccC--Cc
Confidence 345799999999999999999987552 23344444333322211 1 2355665555333333332 111 11
Q ss_pred hhhhcCcEEEEEecCCCCCChhH-HH--------------------------HHHHHHhccc----c-------------
Q 008468 393 AVALGADVIIMTVSAVDGWTSED-SE--------------------------LLNRIQSNKK----S------------- 428 (564)
Q Consensus 393 ~~l~~aD~vl~ViD~s~~~s~~~-~~--------------------------~l~~l~~~~~----~------------- 428 (564)
..+. --+||+|+|.+.|+...+ ++ ++..+..... .
T Consensus 97 ~~l~-~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~ 175 (472)
T PF05783_consen 97 ENLP-NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSS 175 (472)
T ss_pred cccc-ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccc
Confidence 1121 237888999998864321 11 1111111000 0
Q ss_pred -----------------CCCCCCEEEEEecCCCCCCCcc------h---h-h----hhc-ccCCcEEEEeccCCCCHHHH
Q 008468 429 -----------------TESSTPMILVINKIDCAPSASN------E---W-N----KVG-NSFNDHVFTCAVTGQGIQDL 476 (564)
Q Consensus 429 -----------------~~~~~PvIvV~NK~DL~~~~~~------~---~-~----~l~-~~~~~~i~iSAktg~GI~eL 476 (564)
...++|++||++|+|....-+. + . . .++ ......|.+|++...+++-|
T Consensus 176 ~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L 255 (472)
T PF05783_consen 176 SSDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLL 255 (472)
T ss_pred ccccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHH
Confidence 0125799999999997532111 1 0 1 111 23356789999999999999
Q ss_pred HHHHHHHhhc
Q 008468 477 ETAIMKIVGL 486 (564)
Q Consensus 477 ~~~L~~~l~~ 486 (564)
..+|...+..
T Consensus 256 ~~yi~h~l~~ 265 (472)
T PF05783_consen 256 YKYILHRLYG 265 (472)
T ss_pred HHHHHHHhcc
Confidence 9999887754
No 387
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.50 E-value=0.00038 Score=74.14 Aligned_cols=83 Identities=30% Similarity=0.317 Sum_probs=55.1
Q ss_pred hhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcch-h-h----h-hcccC---CcE
Q 008468 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE-W-N----K-VGNSF---NDH 462 (564)
Q Consensus 393 ~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~-~-~----~-l~~~~---~~~ 462 (564)
.+...++++++|+|+.+....-..++ .... .+.|+++|+||+|+.+..... . . + +.+.. ..+
T Consensus 59 ~~~~~~~~Il~VvD~~d~~~s~~~~l-~~~~-------~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i 130 (360)
T TIGR03597 59 SLGDSNALIVYVVDIFDFEGSLIPEL-KRFV-------GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDI 130 (360)
T ss_pred hcccCCcEEEEEEECcCCCCCccHHH-HHHh-------CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcE
Confidence 34678899999999976543222122 1111 257999999999997643211 1 1 1 11111 258
Q ss_pred EEEeccCCCCHHHHHHHHHHH
Q 008468 463 VFTCAVTGQGIQDLETAIMKI 483 (564)
Q Consensus 463 i~iSAktg~GI~eL~~~L~~~ 483 (564)
+.+||++|.|++++++.|.+.
T Consensus 131 ~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 131 ILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred EEecCCCCCCHHHHHHHHHHH
Confidence 999999999999999999765
No 388
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.49 E-value=0.00028 Score=85.78 Aligned_cols=121 Identities=22% Similarity=0.257 Sum_probs=66.7
Q ss_pred EEEEcCCCCChhHHHHHhhcCCcceeccc-------cCeeEEEEEEEEEE-CCeeeEEEeCCCCCCch--------hHHH
Q 008468 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEI-------AGTTRDVIEASVTV-CGVPVTLLDTAGIRETD--------DIVE 384 (564)
Q Consensus 321 I~IvG~~nvGKSSLlN~L~~~~~~~vs~~-------~gtT~d~~~~~~~~-~g~~i~LiDTpG~~~~~--------~~ie 384 (564)
-+|+|++|+||||+++.- |-++...... .+-|+. +.+ =....+++||+|..-.. ..+.
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-----c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~ 187 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-----CDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWL 187 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-----cceEecCCEEEEcCCCccccCCCcccccHHHHH
Confidence 688999999999999986 4443221100 111221 111 12345799999965221 1233
Q ss_pred Hhhhhhhh-hhhhcCcEEEEEecCCCCCC--hhHH----HHHH-HHHhccccCCCCCCEEEEEecCCCCCC
Q 008468 385 KIGVERSE-AVALGADVIIMTVSAVDGWT--SEDS----ELLN-RIQSNKKSTESSTPMILVINKIDCAPS 447 (564)
Q Consensus 385 ~~~i~~~~-~~l~~aD~vl~ViD~s~~~s--~~~~----~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~ 447 (564)
.+--...+ .--+-.|+||+++|+.+-.. ..+. ..++ ++.+.....+...||.+|+||||+...
T Consensus 188 ~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 188 GFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 22111000 11245899999999976332 2211 1221 122233334568999999999998753
No 389
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.47 E-value=0.00021 Score=74.10 Aligned_cols=102 Identities=20% Similarity=0.262 Sum_probs=63.7
Q ss_pred eeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCC
Q 008468 367 PVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446 (564)
Q Consensus 367 ~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~ 446 (564)
-++++|.+|.+.+-.. .-+|+. -.-.|...+++-++-+.-....+.+...+. ..+|+++|++|+|+.+
T Consensus 220 viTFIDLAGHEkYLKT-TvFGMT-----GH~PDf~MLMiGaNaGIiGmTKEHLgLALa------L~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 220 VITFIDLAGHEKYLKT-TVFGMT-----GHMPDFTMLMIGANAGIIGMTKEHLGLALA------LHVPVFVVVTKIDMCP 287 (641)
T ss_pred eEEEEeccchhhhhhe-eeeccc-----cCCCCceEEEecccccceeccHHhhhhhhh------hcCcEEEEEEeeccCc
Confidence 3689999998654211 011111 234688888888876654444444433222 2689999999999987
Q ss_pred CCcchh--h---hh---------------------------cccCCcEEEEeccCCCCHHHHHHHH
Q 008468 447 SASNEW--N---KV---------------------------GNSFNDHVFTCAVTGQGIQDLETAI 480 (564)
Q Consensus 447 ~~~~~~--~---~l---------------------------~~~~~~~i~iSAktg~GI~eL~~~L 480 (564)
.+..++ + .+ .+..+++|.+|-.+|+|++-|...+
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 654322 0 00 1123688999999999997766554
No 390
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.45 E-value=0.0004 Score=64.50 Aligned_cols=58 Identities=22% Similarity=0.366 Sum_probs=35.9
Q ss_pred CeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCC
Q 008468 365 GVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443 (564)
Q Consensus 365 g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~D 443 (564)
+..+.|+||+|..... ...+..||.+++|..+.- .+....++... ...--++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~~-----------~~~~~~Ad~~ivv~tpe~---~D~y~~~k~~~-------~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE-----------VDIASMADTTVVVMAPGA---GDDIQAIKAGI-------MEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh-----------hhHHHhCCEEEEEECCCc---hhHHHHhhhhH-------hhhcCEEEEeCCC
Confidence 4668999999975321 124788999999987652 22222222211 1234588999998
No 391
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.43 E-value=0.0041 Score=68.35 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhc
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
.+-.++++|++||||||++..|.+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHH
Confidence 445699999999999999999885
No 392
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.003 Score=72.63 Aligned_cols=148 Identities=19% Similarity=0.197 Sum_probs=72.8
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceec--cccCeeEEEEE-----------------EE------------EEECCe
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVT--EIAGTTRDVIE-----------------AS------------VTVCGV 366 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs--~~~gtT~d~~~-----------------~~------------~~~~g~ 366 (564)
+-.|+++|++||||||++..|.+.....-. .+.-.+.|... .. -...+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 446899999999999999998863210000 00000001000 00 012345
Q ss_pred eeEEEeCCCCCCchh-HHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCC
Q 008468 367 PVTLLDTAGIRETDD-IVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDC 444 (564)
Q Consensus 367 ~i~LiDTpG~~~~~~-~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL 444 (564)
.++|+||||...... ..+... . .......+-+++|+|++.. .++.. +++.+.... .. .+-=+|+||.|-
T Consensus 265 D~VLIDTAGRs~~d~~l~eel~-~--l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~---~~-~i~glIlTKLDE 335 (767)
T PRK14723 265 HLVLIDTVGMSQRDRNVSEQIA-M--LCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGA---GE-DVDGCIITKLDE 335 (767)
T ss_pred CEEEEeCCCCCccCHHHHHHHH-H--HhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcc---cC-CCCEEEEeccCC
Confidence 689999999754332 222221 0 0112346678999998752 23322 222221110 00 123578999997
Q ss_pred CCCCcchhhhhcccCCcEEEEeccCCCCH-HHH
Q 008468 445 APSASNEWNKVGNSFNDHVFTCAVTGQGI-QDL 476 (564)
Q Consensus 445 ~~~~~~~~~~l~~~~~~~i~iSAktg~GI-~eL 476 (564)
...-.....-......|+.+++ +|++| ++|
T Consensus 336 t~~~G~iL~i~~~~~lPI~yit--~GQ~VPdDL 366 (767)
T PRK14723 336 ATHLGPALDTVIRHRLPVHYVS--TGQKVPEHL 366 (767)
T ss_pred CCCccHHHHHHHHHCCCeEEEe--cCCCChhhc
Confidence 6543332222222223555544 46666 444
No 393
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.40 E-value=0.00085 Score=72.15 Aligned_cols=116 Identities=22% Similarity=0.210 Sum_probs=71.3
Q ss_pred EEEEEEEEEE-CCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCC-----------hhHHHHHHH
Q 008468 354 RDVIEASVTV-CGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWT-----------SEDSELLNR 421 (564)
Q Consensus 354 ~d~~~~~~~~-~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s-----------~~~~~~l~~ 421 (564)
..+.+..+.+ ++..+.++|+.|++..... +..++.++++||||++.++-.. .+.+.++..
T Consensus 223 ~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkK--------W~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~ 294 (389)
T PF00503_consen 223 TGITEIDFNFSGSRKFRLIDVGGQRSERKK--------WIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFES 294 (389)
T ss_dssp SSEEEEEEEE-TTEEEEEEEETSSGGGGGG--------GGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHH
T ss_pred CCeeEEEEEeecccccceecCCCCchhhhh--------HHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHH
Confidence 3466777888 9999999999999754333 3455889999999999864111 122345555
Q ss_pred HHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcccCCcEEEEeccCC---CCHHHHHHHHHHHhh
Q 008468 422 IQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTG---QGIQDLETAIMKIVG 485 (564)
Q Consensus 422 l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~~~~~~i~iSAktg---~GI~eL~~~L~~~l~ 485 (564)
+....- -.+.|+|+++||.|+....-.....+...++.| +| ..++...+.|.+...
T Consensus 295 i~~~~~--~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y------~g~~~~~~~~~~~~i~~~f~ 353 (389)
T PF00503_consen 295 ICNNPW--FKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDY------TGDRPNDVDSAIKFIKNKFL 353 (389)
T ss_dssp HHTSGG--GTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTG------GSH-TSSHHHHHHHHHHHHH
T ss_pred HHhCcc--cccCceEEeeecHHHHHHHccCCCchHhhCCCC------CCCcccCHHHHHHHHHHHHH
Confidence 544321 237899999999997432111100122222222 13 367888888887764
No 394
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.36 E-value=0.00037 Score=69.79 Aligned_cols=122 Identities=20% Similarity=0.271 Sum_probs=75.9
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcce---eccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCch-------------
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAI---VTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETD------------- 380 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~---vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~------------- 380 (564)
++|..||.+|.|||||++.|++..+.. ....|++......+.+.-.++ +++++||.|+++--
T Consensus 43 FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdyi 122 (406)
T KOG3859|consen 43 FNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDYI 122 (406)
T ss_pred EEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHHH
Confidence 789999999999999999999876532 122333333333333333443 56789999997421
Q ss_pred ------hHHHHhhhhhhhhhhh--cCcEEEEEecCCCCCChh--HHHHHHHHHhccccCCCCCCEEEEEecCCCCCCC
Q 008468 381 ------DIVEKIGVERSEAVAL--GADVIIMTVSAVDGWTSE--DSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448 (564)
Q Consensus 381 ------~~ie~~~i~~~~~~l~--~aD~vl~ViD~s~~~s~~--~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~ 448 (564)
-..|...+.|+...+. ..++++|.+.++. .+.. +.-.++.+- ..+.+|-|+-|+|-....
T Consensus 123 daQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Ld-------skVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 123 DAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLD-------SKVNIIPVIAKADTISKE 192 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHh-------hhhhhHHHHHHhhhhhHH
Confidence 1123344666665554 4588999998764 2332 322333332 356778888999976543
No 395
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.31 E-value=0.0016 Score=68.28 Aligned_cols=117 Identities=21% Similarity=0.211 Sum_probs=71.4
Q ss_pred eEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCC--Ch---------hHHHHHHH
Q 008468 353 TRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGW--TS---------EDSELLNR 421 (564)
Q Consensus 353 T~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~--s~---------~~~~~l~~ 421 (564)
|....+..+.+++.++.++|++|++.-... +.....++++||||++.+.-. .. +..++++.
T Consensus 182 T~GI~e~~F~~k~~~f~~~DvGGQRseRrK--------WihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~s 253 (354)
T KOG0082|consen 182 TTGIVEVEFTIKGLKFRMFDVGGQRSERKK--------WIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFES 253 (354)
T ss_pred cCCeeEEEEEeCCCceEEEeCCCcHHHhhh--------HHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHH
Confidence 445677778889999999999998743332 234589999999999987521 11 12234444
Q ss_pred HHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcccCCcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 422 IQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 422 l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
+.... .-.+.++|+.+||.||-...-.. ..+...|+.|-.. ...++...+|.....
T Consensus 254 I~n~~--~F~~tsiiLFLNK~DLFeEKi~~-~~~~~~Fpdy~G~-----~~~~~a~~yI~~kF~ 309 (354)
T KOG0082|consen 254 ICNNK--WFANTSIILFLNKKDLFEEKIKK-VPLTDCFPDYKGV-----NTYEEAAKYIRKKFE 309 (354)
T ss_pred HhcCc--ccccCcEEEEeecHHHHHHHhcc-CchhhhCcCCCCC-----CChHHHHHHHHHHHH
Confidence 43321 12468999999999986432211 1122233322111 356677777777664
No 396
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.28 E-value=0.0014 Score=63.71 Aligned_cols=73 Identities=27% Similarity=0.335 Sum_probs=40.6
Q ss_pred CeeeEEEeCCCCCCchh-HHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCC
Q 008468 365 GVPVTLLDTAGIRETDD-IVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443 (564)
Q Consensus 365 g~~i~LiDTpG~~~~~~-~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~D 443 (564)
+..++|+||||...... ..+++ ..... ....+-+++|+|++... ++...+....... + +-=++++|.|
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el--~~~~~-~~~~~~~~LVlsa~~~~--~~~~~~~~~~~~~-----~-~~~lIlTKlD 151 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEEL--KKLLE-ALNPDEVHLVLSATMGQ--EDLEQALAFYEAF-----G-IDGLILTKLD 151 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHH--HHHHH-HHSSSEEEEEEEGGGGG--HHHHHHHHHHHHS-----S-TCEEEEESTT
T ss_pred CCCEEEEecCCcchhhHHHHHHH--HHHhh-hcCCccceEEEecccCh--HHHHHHHHHhhcc-----c-CceEEEEeec
Confidence 45689999999875432 22222 11111 23678899999998642 3333333333321 1 2346799999
Q ss_pred CCCCC
Q 008468 444 CAPSA 448 (564)
Q Consensus 444 L~~~~ 448 (564)
....-
T Consensus 152 et~~~ 156 (196)
T PF00448_consen 152 ETARL 156 (196)
T ss_dssp SSSTT
T ss_pred CCCCc
Confidence 75543
No 397
>PRK10867 signal recognition particle protein; Provisional
Probab=97.27 E-value=0.0047 Score=67.16 Aligned_cols=99 Identities=19% Similarity=0.312 Sum_probs=48.3
Q ss_pred CeeeEEEeCCCCCCch-hHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCC
Q 008468 365 GVPVTLLDTAGIRETD-DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443 (564)
Q Consensus 365 g~~i~LiDTpG~~~~~-~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~D 443 (564)
++.+.|+||||....+ ...+... .. ...-..+-+++|+|+..+ .+..+....+... .+ ..-+|+||.|
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~--~i-~~~v~p~evllVlda~~g--q~av~~a~~F~~~-----~~-i~giIlTKlD 251 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELK--AI-KAAVNPDEILLVVDAMTG--QDAVNTAKAFNEA-----LG-LTGVILTKLD 251 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHH--HH-HHhhCCCeEEEEEecccH--HHHHHHHHHHHhh-----CC-CCEEEEeCcc
Confidence 4568999999975432 2222211 11 112357788999998642 1222223332221 11 2356789999
Q ss_pred CCCCCcchhhhhcccCCcEEEEeccCCCCHHHH
Q 008468 444 CAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDL 476 (564)
Q Consensus 444 L~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL 476 (564)
-.........-......|+.+++. |+++++|
T Consensus 252 ~~~rgG~alsi~~~~~~PI~fig~--Ge~v~DL 282 (433)
T PRK10867 252 GDARGGAALSIRAVTGKPIKFIGT--GEKLDDL 282 (433)
T ss_pred CcccccHHHHHHHHHCcCEEEEeC--CCccccC
Confidence 643322211111112245555544 5555554
No 398
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.25 E-value=0.0026 Score=67.89 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCChhHHHHHhhc
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
+-+|+|+|++||||||++..|..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHH
Confidence 46799999999999999999964
No 399
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.25 E-value=0.00046 Score=67.94 Aligned_cols=61 Identities=25% Similarity=0.419 Sum_probs=39.2
Q ss_pred eEEEeC-CCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCC-CCEEEEEecCCCC
Q 008468 368 VTLLDT-AGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESS-TPMILVINKIDCA 445 (564)
Q Consensus 368 i~LiDT-pG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~-~PvIvV~NK~DL~ 445 (564)
+.++|| +|++.+ .+...+.+|.+|+|+|++.. +....+.+.++... .+ +++.+|+||.|-.
T Consensus 136 ~VivDtEAGiEHf-----------gRg~~~~vD~vivVvDpS~~-sl~taeri~~L~~e-----lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 136 VVIVDTEAGIEHF-----------GRGTIEGVDLVIVVVDPSYK-SLRTAERIKELAEE-----LGIKRIFVVLNKVDEE 198 (255)
T ss_pred EEEEecccchhhh-----------ccccccCCCEEEEEeCCcHH-HHHHHHHHHHHHHH-----hCCceEEEEEeeccch
Confidence 667776 454332 23447889999999998763 23333334444433 23 7899999999965
No 400
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.18 E-value=0.00089 Score=70.05 Aligned_cols=118 Identities=19% Similarity=0.189 Sum_probs=72.9
Q ss_pred eEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCC-----------hhHHHHHHH
Q 008468 353 TRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWT-----------SEDSELLNR 421 (564)
Q Consensus 353 T~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s-----------~~~~~~l~~ 421 (564)
|....+..+.+++..+.+||++|++.....| ..++.++++++||+|.++-.. .+....+..
T Consensus 148 T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW--------~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~ 219 (317)
T cd00066 148 TTGIVETKFTIKNLKFRMFDVGGQRSERKKW--------IHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDS 219 (317)
T ss_pred cCCeeEEEEEecceEEEEECCCCCcccchhH--------HHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHH
Confidence 3355666678889999999999997655444 345889999999999986311 112234444
Q ss_pred HHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcccCCcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 422 IQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 422 l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
+.... .-.+.|+++++||.|+....-.. -.+...++.+-. .+..+++..+++.+...
T Consensus 220 i~~~~--~~~~~pill~~NK~D~f~~ki~~-~~l~~~fp~y~g----~~~~~~~~~~~i~~~F~ 276 (317)
T cd00066 220 ICNSR--WFANTSIILFLNKKDLFEEKIKK-SPLTDYFPDYTG----PPNDYEEAAKFIRKKFL 276 (317)
T ss_pred HHhCc--cccCCCEEEEccChHHHHHhhcC-CCccccCCCCCC----CCCCHHHHHHHHHHHHH
Confidence 44321 12478999999999975432111 011111211110 03467888888887764
No 401
>PRK01889 GTPase RsgA; Reviewed
Probab=97.15 E-value=0.0015 Score=69.36 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=54.9
Q ss_pred hhcCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhc--ccCCcEEEEeccCCC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVG--NSFNDHVFTCAVTGQ 471 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~--~~~~~~i~iSAktg~ 471 (564)
+.++|.+++|+++..++.....+ ++..+.. .+.+.++|+||+||.+......+.+. ....+++.+|+++|.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~------~~i~piIVLNK~DL~~~~~~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE------SGAEPVIVLTKADLCEDAEEKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH------cCCCEEEEEEChhcCCCHHHHHHHHHHhCCCCcEEEEECCCCc
Confidence 57899999999997655543322 2222222 35778999999999865221112222 234678999999999
Q ss_pred CHHHHHHHHH
Q 008468 472 GIQDLETAIM 481 (564)
Q Consensus 472 GI~eL~~~L~ 481 (564)
|+++|..++.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999998885
No 402
>PRK13796 GTPase YqeH; Provisional
Probab=97.13 E-value=0.002 Score=68.82 Aligned_cols=84 Identities=27% Similarity=0.260 Sum_probs=54.1
Q ss_pred hhhhcCc-EEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcch-h-h----hhccc----CCc
Q 008468 393 AVALGAD-VIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE-W-N----KVGNS----FND 461 (564)
Q Consensus 393 ~~l~~aD-~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~-~-~----~l~~~----~~~ 461 (564)
..+..+| +|++|+|+.+..... ...+..+. .+.|+++|+||+|+.+..... . . .+.+. ...
T Consensus 64 ~~i~~~~~lIv~VVD~~D~~~s~-~~~L~~~~-------~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~ 135 (365)
T PRK13796 64 NGIGDSDALVVNVVDIFDFNGSW-IPGLHRFV-------GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVD 135 (365)
T ss_pred HhhcccCcEEEEEEECccCCCch-hHHHHHHh-------CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCc
Confidence 3355566 999999998743221 11222221 257999999999997543211 1 1 11111 126
Q ss_pred EEEEeccCCCCHHHHHHHHHHHh
Q 008468 462 HVFTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 462 ~i~iSAktg~GI~eL~~~L~~~l 484 (564)
++.+||++|.|++++++.|.+..
T Consensus 136 v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 136 VVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999997754
No 403
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.0022 Score=76.52 Aligned_cols=125 Identities=22% Similarity=0.250 Sum_probs=66.4
Q ss_pred EEEEcCCCCChhHHHHHhhcCCcceecc--ccCeeEEEEEEEEEE-CCeeeEEEeCCCCCCchh--------HHHHh-hh
Q 008468 321 IAIVGRPNVGKSSLLNAWSKSERAIVTE--IAGTTRDVIEASVTV-CGVPVTLLDTAGIRETDD--------IVEKI-GV 388 (564)
Q Consensus 321 I~IvG~~nvGKSSLlN~L~~~~~~~vs~--~~gtT~d~~~~~~~~-~g~~i~LiDTpG~~~~~~--------~ie~~-~i 388 (564)
-+|+|+||+||||++..- |.++.+... ..++.... ...+++ =+..-+++||+|-....+ .+..+ +.
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g-T~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG-TRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCC-CcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 467899999999998763 333322111 11111000 122222 234568999999652221 11111 11
Q ss_pred hhhhhhhhcCcEEEEEecCCCCCCh--hHH-H---HHHH-HHhccccCCCCCCEEEEEecCCCCCC
Q 008468 389 ERSEAVALGADVIIMTVSAVDGWTS--EDS-E---LLNR-IQSNKKSTESSTPMILVINKIDCAPS 447 (564)
Q Consensus 389 ~~~~~~l~~aD~vl~ViD~s~~~s~--~~~-~---~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~ 447 (564)
-+.....+-.|+||+.+|+++-.+. .+. . .++. +.+.........||.+++||.|+.+-
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence 1222235667999999998763322 222 1 1221 22222233457899999999999864
No 404
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.00073 Score=68.50 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=87.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceec-cc-cCeeEEEE-----EE------------------------EEEECC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVT-EI-AGTTRDVI-----EA------------------------SVTVCG 365 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs-~~-~gtT~d~~-----~~------------------------~~~~~g 365 (564)
-.++|+-+|+.--||||++.++.|-...... +. ...|...- .+ .++..|
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 3489999999999999999999874311000 00 00111000 00 011111
Q ss_pred --------eeeEEEeCCCCCCc-hhHHHHhhhhhhhhhhhcCcEEEEEecCCCCC-ChhHHHHHHHHHhccccCCCCCCE
Q 008468 366 --------VPVTLLDTAGIRET-DDIVEKIGVERSEAVALGADVIIMTVSAVDGW-TSEDSELLNRIQSNKKSTESSTPM 435 (564)
Q Consensus 366 --------~~i~LiDTpG~~~~-~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~-s~~~~~~l~~l~~~~~~~~~~~Pv 435 (564)
..+.++|.||..-. ..+. .-..--|++++++..+.+. ..+..+.+..+.-+ .-+.+
T Consensus 117 ~~~~~klvRHVSfVDCPGHDiLMaTML---------nGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM-----~Lkhi 182 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGHDILMATML---------NGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM-----KLKHI 182 (466)
T ss_pred CCCceEEEEEEEeccCCchHHHHHHHh---------cchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh-----hhceE
Confidence 12568999997421 1111 1112236667777665421 12222222222111 12468
Q ss_pred EEEEecCCCCCCCcchh--hhhc---c----cCCcEEEEeccCCCCHHHHHHHHHHHhhc
Q 008468 436 ILVINKIDCAPSASNEW--NKVG---N----SFNDHVFTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 436 IvV~NK~DL~~~~~~~~--~~l~---~----~~~~~i~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
+++-||+||........ +++. . ...+++++||.-+.|++-+.++|.+.+..
T Consensus 183 iilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv 242 (466)
T KOG0466|consen 183 IILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV 242 (466)
T ss_pred EEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence 99999999987654332 2221 1 33689999999999999999999998753
No 405
>PRK13695 putative NTPase; Provisional
Probab=97.07 E-value=0.0021 Score=60.91 Aligned_cols=151 Identities=17% Similarity=0.191 Sum_probs=72.7
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCc---ceeccc-----cCeeEEEEEEEEEEC-CeeeEE--EeCCCCCC------chh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSER---AIVTEI-----AGTTRDVIEASVTVC-GVPVTL--LDTAGIRE------TDD 381 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~---~~vs~~-----~gtT~d~~~~~~~~~-g~~i~L--iDTpG~~~------~~~ 381 (564)
++|+|+|.+|+|||||+..+.+.-. ..+..+ .............+. +....+ .+.++... ..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ls 80 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVVNLE 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEEehH
Confidence 5899999999999999999765321 000000 000000000001111 222221 12212111 112
Q ss_pred HHHHhhhhhhhhhhhcCcEEEEEec---CCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhccc
Q 008468 382 IVEKIGVERSEAVALGADVIIMTVS---AVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNS 458 (564)
Q Consensus 382 ~ie~~~i~~~~~~l~~aD~vl~ViD---~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~~ 458 (564)
..+..+.......+..+|+ +++| ..+..+....+.+..+.. .+.|+|++.||...... .+.+...
T Consensus 81 gle~~~~~l~~~~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~------~~~~~i~v~h~~~~~~~----~~~i~~~ 148 (174)
T PRK13695 81 DLERIGIPALERALEEADV--IIIDEIGKMELKSPKFVKAVEEVLD------SEKPVIATLHRRSVHPF----VQEIKSR 148 (174)
T ss_pred HHHHHHHHHHHhccCCCCE--EEEECCCcchhhhHHHHHHHHHHHh------CCCeEEEEECchhhHHH----HHHHhcc
Confidence 3455556666666778888 4777 333333333444444442 36799999998532210 1222221
Q ss_pred -CCcEEEEeccCCCCHHHHHHHHHHHh
Q 008468 459 -FNDHVFTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 459 -~~~~i~iSAktg~GI~eL~~~L~~~l 484 (564)
...++.+ +.+|=+++...+.+.+
T Consensus 149 ~~~~i~~~---~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 149 PGGRVYEL---TPENRDSLPFEILNRL 172 (174)
T ss_pred CCcEEEEE---cchhhhhHHHHHHHHH
Confidence 1234444 4455567777776654
No 406
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.00091 Score=71.70 Aligned_cols=112 Identities=23% Similarity=0.314 Sum_probs=75.4
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccC---------------eeEEEEEEEE----------------EECCeee
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAG---------------TTRDVIEASV----------------TVCGVPV 368 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~g---------------tT~d~~~~~~----------------~~~g~~i 368 (564)
++.++-+..-|||||...|..+..-+.....| .|.......+ +-++.-+
T Consensus 21 NmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLi 100 (842)
T KOG0469|consen 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLI 100 (842)
T ss_pred cceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeE
Confidence 57888889999999999998765322212222 2222111111 1123457
Q ss_pred EEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCC
Q 008468 369 TLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445 (564)
Q Consensus 369 ~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~ 445 (564)
+++|.||+.++...+. .+++-.|..++|+|..++...+....+.+...+ .+.-++|+||+|..
T Consensus 101 NLIDSPGHVDFSSEVT--------AALRVTDGALVVVDcv~GvCVQTETVLrQA~~E------RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 101 NLIDSPGHVDFSSEVT--------AALRVTDGALVVVDCVSGVCVQTETVLRQAIAE------RIKPVLVMNKMDRA 163 (842)
T ss_pred EeccCCCcccchhhhh--------heeEeccCcEEEEEccCceEechHHHHHHHHHh------hccceEEeehhhHH
Confidence 8999999999876543 347889999999999998888877777765543 23336789999963
No 407
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.07 E-value=0.0017 Score=68.70 Aligned_cols=117 Identities=20% Similarity=0.170 Sum_probs=74.2
Q ss_pred eEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCC-----------ChhHHHHHHH
Q 008468 353 TRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGW-----------TSEDSELLNR 421 (564)
Q Consensus 353 T~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~-----------s~~~~~~l~~ 421 (564)
|..+.+..+.+++..+.+||..|.+.....|. .++.++++++||+|.++-. ..+....+..
T Consensus 171 T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~--------~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~ 242 (342)
T smart00275 171 TTGIQETAFIVKKLFFRMFDVGGQRSERKKWI--------HCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFES 242 (342)
T ss_pred ccceEEEEEEECCeEEEEEecCCchhhhhhHH--------HHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHH
Confidence 34556667888999999999999976555543 4588999999999998631 1122344444
Q ss_pred HHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcccCCcEEEEeccCC-CCHHHHHHHHHHHhhc
Q 008468 422 IQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTG-QGIQDLETAIMKIVGL 486 (564)
Q Consensus 422 l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~~~~~~i~iSAktg-~GI~eL~~~L~~~l~~ 486 (564)
+.... .-.+.|+++++||.|+....-.. ..+...++.+ .| ..+++..+++.+....
T Consensus 243 l~~~~--~~~~~piil~~NK~D~~~~Kl~~-~~l~~~fp~y------~g~~~~~~~~~yi~~~F~~ 299 (342)
T smart00275 243 ICNSR--WFANTSIILFLNKIDLFEEKIKK-VPLVDYFPDY------KGPNDYEAAAKFIKQKFLR 299 (342)
T ss_pred HHcCc--cccCCcEEEEEecHHhHHHHhCC-CchhccCCCC------CCCCCHHHHHHHHHHHHHH
Confidence 44431 22478999999999985432111 0111222211 22 4688888888887653
No 408
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=97.05 E-value=0.0015 Score=70.96 Aligned_cols=153 Identities=18% Similarity=0.191 Sum_probs=95.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
..+|++|+|..++|||+|+.+++...+. ....|.-.+...+..+......+.+.|-+|..+ . .+..
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~-~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~--a-----------Qft~ 94 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYT-QDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD--A-----------QFCQ 94 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceec-cccCCcCccceeeEEeeccceEeeeecccCCch--h-----------hhhh
Confidence 3489999999999999999998876643 222222223333333333344566777777211 1 2356
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcch---h--hhh-cc-cCCcEEEEeccC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE---W--NKV-GN-SFNDHVFTCAVT 469 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~---~--~~l-~~-~~~~~i~iSAkt 469 (564)
.+|++||||...+..+++..+.+..-+..+. .....|+++|+++.-........ . .++ .+ .-+.+|+.++.+
T Consensus 95 wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r-~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~aty 173 (749)
T KOG0705|consen 95 WVDAVVFVFSVEDEQSFQAVQALAHEMSSYR-NISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATY 173 (749)
T ss_pred hccceEEEEEeccccCHHHHHHHHhhccccc-ccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhh
Confidence 7899999999988888877665543222221 13467888888874322111111 1 111 22 225689999999
Q ss_pred CCCHHHHHHHHHHHh
Q 008468 470 GQGIQDLETAIMKIV 484 (564)
Q Consensus 470 g~GI~eL~~~L~~~l 484 (564)
|.+++..|..+...+
T Consensus 174 Glnv~rvf~~~~~k~ 188 (749)
T KOG0705|consen 174 GLNVERVFQEVAQKI 188 (749)
T ss_pred hhhHHHHHHHHHHHH
Confidence 999999988877654
No 409
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.03 E-value=0.0096 Score=64.78 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=19.5
Q ss_pred CcEEEEEcCCCCChhHHHHHhhc
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
+-.++++|++||||||++..|..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999998887754
No 410
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.02 E-value=0.011 Score=62.92 Aligned_cols=118 Identities=24% Similarity=0.199 Sum_probs=61.5
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCc--ceeccccCeeEEEEEEE-----------------------------EEECCe
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSER--AIVTEIAGTTRDVIEAS-----------------------------VTVCGV 366 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~--~~vs~~~gtT~d~~~~~-----------------------------~~~~g~ 366 (564)
+=.|++|||+||||||-+-.|..... ..-....-.|.|.+.-- ..+..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 44699999999999999988765432 11111222333322100 112345
Q ss_pred eeEEEeCCCCCCchhHHHHhhhhhhhhhhh--cCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCC
Q 008468 367 PVTLLDTAGIRETDDIVEKIGVERSEAVAL--GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDC 444 (564)
Q Consensus 367 ~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~--~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL 444 (564)
.++|+||+|-...+... +.....++. ...-+.+|++++.. ..+. ..+...+... + .-=+++||.|-
T Consensus 283 d~ILVDTaGrs~~D~~~----i~el~~~~~~~~~i~~~Lvlsat~K--~~dl---kei~~~f~~~--~-i~~~I~TKlDE 350 (407)
T COG1419 283 DVILVDTAGRSQYDKEK----IEELKELIDVSHSIEVYLVLSATTK--YEDL---KEIIKQFSLF--P-IDGLIFTKLDE 350 (407)
T ss_pred CEEEEeCCCCCccCHHH----HHHHHHHHhccccceEEEEEecCcc--hHHH---HHHHHHhccC--C-cceeEEEcccc
Confidence 68999999976443221 111222222 23445667777653 2332 2233322211 1 12467899997
Q ss_pred CCC
Q 008468 445 APS 447 (564)
Q Consensus 445 ~~~ 447 (564)
...
T Consensus 351 T~s 353 (407)
T COG1419 351 TTS 353 (407)
T ss_pred cCc
Confidence 554
No 411
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.01 E-value=0.016 Score=62.55 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCChhHHHHHhhc
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
+..++++|++||||||++..|..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999875
No 412
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.98 E-value=0.004 Score=65.13 Aligned_cols=146 Identities=20% Similarity=0.219 Sum_probs=81.6
Q ss_pred EEEEcCCCCChhHHHHHhhcCCc----c-eeccccCeeEE-----------EEE---EE--EE---------------EC
Q 008468 321 IAIVGRPNVGKSSLLNAWSKSER----A-IVTEIAGTTRD-----------VIE---AS--VT---------------VC 364 (564)
Q Consensus 321 I~IvG~~nvGKSSLlN~L~~~~~----~-~vs~~~gtT~d-----------~~~---~~--~~---------------~~ 364 (564)
.+|.|.=|+|||||+|.|+.+.. + +|.++.-+..| ..+ +- ++ .+
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 57789999999999999997542 1 23333222222 111 00 11 11
Q ss_pred CeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhH---HHHHHHHHhccccCCCCCCEEEEEec
Q 008468 365 GVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSED---SELLNRIQSNKKSTESSTPMILVINK 441 (564)
Q Consensus 365 g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~---~~~l~~l~~~~~~~~~~~PvIvV~NK 441 (564)
+....++.|.|+.++...+..+-........-.-|.++-|+|+.+-....+ .....++. .--++|+||
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia---------~AD~ivlNK 154 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA---------FADVIVLNK 154 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH---------hCcEEEEec
Confidence 234678999999988666665533222222345688999999987433222 11122221 234889999
Q ss_pred CCCCCCCcchh-h-hhccc--CCcEEEEeccCCCCHHHH
Q 008468 442 IDCAPSASNEW-N-KVGNS--FNDHVFTCAVTGQGIQDL 476 (564)
Q Consensus 442 ~DL~~~~~~~~-~-~l~~~--~~~~i~iSAktg~GI~eL 476 (564)
.|+.+...... + .+.+. ..+++.+|. .+....++
T Consensus 155 ~Dlv~~~~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~l 192 (323)
T COG0523 155 TDLVDAEELEALEARLRKLNPRARIIETSY-GDVDLAEL 192 (323)
T ss_pred ccCCCHHHHHHHHHHHHHhCCCCeEEEccc-cCCCHHHh
Confidence 99998765332 2 22221 235666666 33344333
No 413
>PRK01889 GTPase RsgA; Reviewed
Probab=96.88 E-value=0.0009 Score=71.12 Aligned_cols=59 Identities=32% Similarity=0.371 Sum_probs=36.9
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceecccc-------CeeEEEEEEEEEECCeeeEEEeCCCCCCc
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIA-------GTTRDVIEASVTVCGVPVTLLDTAGIRET 379 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~-------gtT~d~~~~~~~~~g~~i~LiDTpG~~~~ 379 (564)
+-+++++|.+|+|||||+|.|++........+. .+|..... ..+.+ ...++||||+.++
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l--~~l~~-~~~l~DtpG~~~~ 260 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHREL--HPLPS-GGLLIDTPGMREL 260 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccE--EEecC-CCeecCCCchhhh
Confidence 457999999999999999999986543222221 12222111 12222 2368899998643
No 414
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.84 E-value=0.0073 Score=65.63 Aligned_cols=99 Identities=22% Similarity=0.323 Sum_probs=49.7
Q ss_pred CeeeEEEeCCCCCCchh-HHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCC
Q 008468 365 GVPVTLLDTAGIRETDD-IVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443 (564)
Q Consensus 365 g~~i~LiDTpG~~~~~~-~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~D 443 (564)
++.+.|+||||....++ ...... . ....-..|-+++|+|+..+ .+..+....+.... + ..=+|+||.|
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~--~-i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v-----~-i~giIlTKlD 250 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELA--A-IKEILNPDEILLVVDAMTG--QDAVNTAKTFNERL-----G-LTGVVLTKLD 250 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHH--H-HHHhhCCceEEEEEeccch--HHHHHHHHHHHhhC-----C-CCEEEEeCcc
Confidence 45689999999764322 222221 1 1123457889999998743 22223333332211 1 2356799999
Q ss_pred CCCCCcchhhhhcccCCcEEEEeccCCCCHHHH
Q 008468 444 CAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDL 476 (564)
Q Consensus 444 L~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL 476 (564)
-.........-......|+.+++. |+.+++|
T Consensus 251 ~~~~~G~~lsi~~~~~~PI~fi~~--Ge~i~dl 281 (428)
T TIGR00959 251 GDARGGAALSVRSVTGKPIKFIGV--GEKIDDL 281 (428)
T ss_pred CcccccHHHHHHHHHCcCEEEEeC--CCChhhC
Confidence 643322211111112245555544 5555554
No 415
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.80 E-value=0.014 Score=55.14 Aligned_cols=72 Identities=18% Similarity=0.309 Sum_probs=40.2
Q ss_pred CeeeEEEeCCCCCCch-hHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCC
Q 008468 365 GVPVTLLDTAGIRETD-DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKID 443 (564)
Q Consensus 365 g~~i~LiDTpG~~~~~-~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~D 443 (564)
+..+.++||||..... ..++... ........|.+++|+|+..+. ...+........ .+ ..-+|+||.|
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~---~l~~~~~~~~~~lVv~~~~~~--~~~~~~~~~~~~-----~~-~~~viltk~D 150 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELK---KIKRVVKPDEVLLVVDAMTGQ--DAVNQAKAFNEA-----LG-ITGVILTKLD 150 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHH---HHHhhcCCCeEEEEEECCCCh--HHHHHHHHHHhh-----CC-CCEEEEECCc
Confidence 4568999999986432 2222221 111123589999999986432 222333333221 12 3567889999
Q ss_pred CCCC
Q 008468 444 CAPS 447 (564)
Q Consensus 444 L~~~ 447 (564)
....
T Consensus 151 ~~~~ 154 (173)
T cd03115 151 GDAR 154 (173)
T ss_pred CCCC
Confidence 7654
No 416
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.68 E-value=0.0041 Score=65.12 Aligned_cols=73 Identities=15% Similarity=0.158 Sum_probs=41.5
Q ss_pred eeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhH-HHH-HHHHHhccccCCCCCCEEEEEecCCC
Q 008468 367 PVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSED-SEL-LNRIQSNKKSTESSTPMILVINKIDC 444 (564)
Q Consensus 367 ~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~-~~~-l~~l~~~~~~~~~~~PvIvV~NK~DL 444 (564)
...++.|.|..++....+.+.........-..|.++.|+|+.+.....+ ... ..++. .--++|+||+|+
T Consensus 92 d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~---------~AD~IvlnK~Dl 162 (318)
T PRK11537 92 DRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG---------YADRILLTKTDV 162 (318)
T ss_pred CEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH---------hCCEEEEecccc
Confidence 4578999999887766554411111111223588999999975321111 111 12221 124789999999
Q ss_pred CCCC
Q 008468 445 APSA 448 (564)
Q Consensus 445 ~~~~ 448 (564)
.+..
T Consensus 163 ~~~~ 166 (318)
T PRK11537 163 AGEA 166 (318)
T ss_pred CCHH
Confidence 8753
No 417
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.67 E-value=0.0026 Score=60.57 Aligned_cols=47 Identities=26% Similarity=0.405 Sum_probs=33.5
Q ss_pred cEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCc
Q 008468 399 DVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449 (564)
Q Consensus 399 D~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~ 449 (564)
|++++|+|+..+.+..+..+.+.+.. ...++|+|+|+||+|+.+...
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l----~~~~kp~IlVlNK~DL~~~~~ 47 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQ----AGGNKKLVLVLNKIDLVPKEN 47 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHh----ccCCCCEEEEEehhhcCCHHH
Confidence 79999999998877665555444211 113589999999999976443
No 418
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.66 E-value=0.01 Score=63.66 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCCChhHHHHHhhc
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
+-.|+++|++||||||.+..|..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988764
No 419
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.62 E-value=0.019 Score=50.96 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
+-.+.|.|++|+|||+|++.+...-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3569999999999999999998764
No 420
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.52 E-value=0.0043 Score=59.22 Aligned_cols=72 Identities=22% Similarity=0.287 Sum_probs=39.7
Q ss_pred eeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCC
Q 008468 366 VPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDC 444 (564)
Q Consensus 366 ~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL 444 (564)
....++.|.|..+....... .......-..+.++.|+|+.+-....+. ..+..-. ..--++|+||+|+
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~---~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi--------~~ADvIvlnK~D~ 153 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQ---DPPLKEDFRLDSIITVVDATNFDELENIPELLREQI--------AFADVIVLNKIDL 153 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHH---SHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHH--------CT-SEEEEE-GGG
T ss_pred cCEEEECCccccccchhhhc---cccccccccccceeEEeccccccccccchhhhhhcc--------hhcCEEEEecccc
Confidence 45788999998776655211 2222224456899999999652111111 1221111 1234789999999
Q ss_pred CCCC
Q 008468 445 APSA 448 (564)
Q Consensus 445 ~~~~ 448 (564)
.+..
T Consensus 154 ~~~~ 157 (178)
T PF02492_consen 154 VSDE 157 (178)
T ss_dssp HHHH
T ss_pred CChh
Confidence 7654
No 421
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=96.46 E-value=0.0051 Score=64.79 Aligned_cols=150 Identities=19% Similarity=0.225 Sum_probs=91.6
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcCCcce------------------------------eccccCeeEEEEEEEEEEC
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKSERAI------------------------------VTEIAGTTRDVIEASVTVC 364 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~------------------------------vs~~~gtT~d~~~~~~~~~ 364 (564)
.+..++++++|...+||||+-..++...... -....|-|...-...+...
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 3567999999999999999987776432100 0112334455555666667
Q ss_pred CeeeEEEeCCCCCCch-hHHHHhhhhhhhhhhhcCcEEEEEecCCCCCCh-------hHHHHHHHHHhccccCCCCCCEE
Q 008468 365 GVPVTLLDTAGIRETD-DIVEKIGVERSEAVALGADVIIMTVSAVDGWTS-------EDSELLNRIQSNKKSTESSTPMI 436 (564)
Q Consensus 365 g~~i~LiDTpG~~~~~-~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~-------~~~~~l~~l~~~~~~~~~~~PvI 436 (564)
...+++.|+||...+. +++ .-..+||+-++|+++..+... +..+.. .+.... .-...|
T Consensus 156 ~~~ftiLDApGHk~fv~nmI---------~GasqAD~~vLvisar~gefetgFerGgQTREha-~Lakt~----gv~~lV 221 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMI---------GGASQADLAVLVISARKGEFETGFEKGGQTREHA-MLAKTA----GVKHLI 221 (501)
T ss_pred ceeEEeeccCcccccchhhc---------cccchhhhhhhhhhhhhchhhcccccccchhHHH-HHHHhh----ccceEE
Confidence 7889999999987653 222 225678999999988543211 111111 111111 124589
Q ss_pred EEEecCCCCCCCcch-h-----hh----hcc------cCCcEEEEeccCCCCHHHHHH
Q 008468 437 LVINKIDCAPSASNE-W-----NK----VGN------SFNDHVFTCAVTGQGIQDLET 478 (564)
Q Consensus 437 vV~NK~DL~~~~~~~-~-----~~----l~~------~~~~~i~iSAktg~GI~eL~~ 478 (564)
+++||+|-...+-.. . ++ +.. .-..++++|..+|.++.+..+
T Consensus 222 v~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 222 VLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred EEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 999999975432111 1 11 110 113589999999999988765
No 422
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.37 E-value=0.021 Score=47.24 Aligned_cols=72 Identities=18% Similarity=0.158 Sum_probs=46.9
Q ss_pred EEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcE
Q 008468 321 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADV 400 (564)
Q Consensus 321 I~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~ 400 (564)
+++.|.+|+||||+...+...-.. ..+.- ..++ .+.++|+++........ .......+|.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~--~g~~v---------~~~~--d~iivD~~~~~~~~~~~-------~~~~~~~~~~ 61 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK--RGKRV---------LLID--DYVLIDTPPGLGLLVLL-------CLLALLAADL 61 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH--CCCeE---------EEEC--CEEEEeCCCCccchhhh-------hhhhhhhCCE
Confidence 678899999999999988764211 01110 1111 78999999876543211 1234678999
Q ss_pred EEEEecCCCCCC
Q 008468 401 IIMTVSAVDGWT 412 (564)
Q Consensus 401 vl~ViD~s~~~s 412 (564)
++++++......
T Consensus 62 vi~v~~~~~~~~ 73 (99)
T cd01983 62 VIIVTTPEALAV 73 (99)
T ss_pred EEEecCCchhhH
Confidence 999998876433
No 423
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.37 E-value=0.04 Score=56.30 Aligned_cols=120 Identities=26% Similarity=0.269 Sum_probs=63.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC------cceeccccC---------e---eEE--EEEEE--------E----EEC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE------RAIVTEIAG---------T---TRD--VIEAS--------V----TVC 364 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~------~~~vs~~~g---------t---T~d--~~~~~--------~----~~~ 364 (564)
.+-+++++|++|+||||++..+...- ...++.-+. + ..+ ..... + ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 44789999999999999998886531 111110000 0 000 00000 0 012
Q ss_pred CeeeEEEeCCCCCCc-hhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecC
Q 008468 365 GVPVTLLDTAGIRET-DDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKI 442 (564)
Q Consensus 365 g~~i~LiDTpG~~~~-~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~ 442 (564)
+..+.|+||||.... ...++++. ........|-+++|+|++.. .++. +.++.... -.+-=+++||.
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~---~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-------~~~~~~I~TKl 221 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMI---ETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-------IHIDGIVFTKF 221 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHH---HHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC-------CCCCEEEEEee
Confidence 467899999998643 23333321 11113356778999998753 2222 22232211 12345789999
Q ss_pred CCCCCC
Q 008468 443 DCAPSA 448 (564)
Q Consensus 443 DL~~~~ 448 (564)
|-...-
T Consensus 222 Det~~~ 227 (270)
T PRK06731 222 DETASS 227 (270)
T ss_pred cCCCCc
Confidence 976543
No 424
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.012 Score=58.24 Aligned_cols=118 Identities=19% Similarity=0.229 Sum_probs=69.3
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcc----eeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhH-HHHhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERA----IVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDI-VEKIGVERSEA 393 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~----~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~-ie~~~i~~~~~ 393 (564)
.+|.++|...+||||+-...+.+-.. +.......|++.+. -.-..+.+||.||+.++.+. .. ...
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is----~sfinf~v~dfPGQ~~~Fd~s~D------~e~ 97 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHIS----NSFINFQVWDFPGQMDFFDPSFD------YEM 97 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhh----hhhcceEEeecCCccccCCCccC------HHH
Confidence 67999999999999998876654321 11111222222221 12245789999999864332 11 123
Q ss_pred hhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCC
Q 008468 394 VALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447 (564)
Q Consensus 394 ~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~ 447 (564)
..+.+-++++|+|+.+.....-..+...+...+ ...+++.+=+.+.|.|-...
T Consensus 98 iF~~~gALifvIDaQddy~eala~L~~~v~ray-kvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 98 IFRGVGALIFVIDAQDDYMEALARLHMTVERAY-KVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred HHhccCeEEEEEechHHHHHHHHHHHHHhhhee-ecCCCceEEEEEEeccCCch
Confidence 478889999999987632211111111111111 23467778899999996654
No 425
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.31 E-value=0.0094 Score=45.96 Aligned_cols=44 Identities=32% Similarity=0.563 Sum_probs=25.9
Q ss_pred hcCcEEEEEecCCC--CCChhH-HHHHHHHHhccccCCCCCCEEEEEecCC
Q 008468 396 LGADVIIMTVSAVD--GWTSED-SELLNRIQSNKKSTESSTPMILVINKID 443 (564)
Q Consensus 396 ~~aD~vl~ViD~s~--~~s~~~-~~~l~~l~~~~~~~~~~~PvIvV~NK~D 443 (564)
.-.++|+|++|++. +.+.++ ..+++.+...+ .++|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F----~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF----PNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT----TTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc----CCCCEEEEEeccC
Confidence 34689999999986 444433 35555565543 3789999999998
No 426
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.25 E-value=0.031 Score=59.09 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=28.1
Q ss_pred eeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCC
Q 008468 367 PVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVD 409 (564)
Q Consensus 367 ~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~ 409 (564)
...++.|.|..++......+... .....-..|.++.|+|+.+
T Consensus 94 d~IvIEtsG~a~P~~i~~~~~~~-~l~~~~~l~~vvtvVDa~~ 135 (341)
T TIGR02475 94 DHILIETSGLALPKPLVQAFQWP-EIRSRVTVDGVVTVVDGPA 135 (341)
T ss_pred CEEEEeCCCCCCHHHHHHHhcCc-cccceEEeeeEEEEEECch
Confidence 46789999999887776654211 1111234688999999974
No 427
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.17 E-value=0.014 Score=51.77 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.8
Q ss_pred EEEEcCCCCChhHHHHHhhcCC
Q 008468 321 IAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 321 I~IvG~~nvGKSSLlN~L~~~~ 342 (564)
|+|.|+||+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999998764
No 428
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.12 E-value=0.0046 Score=55.10 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHhhcCC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
-++|.|++|+|||++++.+....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998864
No 429
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.05 E-value=0.012 Score=53.74 Aligned_cols=99 Identities=13% Similarity=0.204 Sum_probs=56.7
Q ss_pred EEEcCCCCChhHHHHHhhcCCc------ceec-cccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 322 AIVGRPNVGKSSLLNAWSKSER------AIVT-EIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 322 ~IvG~~nvGKSSLlN~L~~~~~------~~vs-~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..-|.+|+|||++--.+...-. ..+. +..+... .+.+.++|||+..... ....
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~----------~yd~VIiD~p~~~~~~----------~~~~ 63 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL----------DYDYIIIDTGAGISDN----------VLDF 63 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC----------CCCEEEEECCCCCCHH----------HHHH
Confidence 3457899999998766654211 0111 1011100 1678999999853321 1244
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDC 444 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL 444 (564)
+..+|.++++++.+..........++.+... ....++.+|+|+++.
T Consensus 64 l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~----~~~~~~~lVvN~~~~ 109 (139)
T cd02038 64 FLAADEVIVVTTPEPTSITDAYALIKKLAKQ----LRVLNFRVVVNRAES 109 (139)
T ss_pred HHhCCeEEEEcCCChhHHHHHHHHHHHHHHh----cCCCCEEEEEeCCCC
Confidence 7889999999988643222223344444332 124577899999874
No 430
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=0.13 Score=55.73 Aligned_cols=133 Identities=20% Similarity=0.237 Sum_probs=70.8
Q ss_pred hhhhcCCcEEEEEcCCCCChhHHHHHhh----cCCcce------------e----------ccccCeeEEEEEEEE----
Q 008468 312 DKLLQSGLQIAIVGRPNVGKSSLLNAWS----KSERAI------------V----------TEIAGTTRDVIEASV---- 361 (564)
Q Consensus 312 ~~~~~~~ikI~IvG~~nvGKSSLlN~L~----~~~~~~------------v----------s~~~gtT~d~~~~~~---- 361 (564)
.+..+.++.|++||-.||||||=+-.++ .+.+.. | +...++.....+.-+
T Consensus 372 ar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~ 451 (587)
T KOG0781|consen 372 ARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDA 451 (587)
T ss_pred HHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCCh
Confidence 3445578999999999999999886654 233211 0 001111111111111
Q ss_pred -----------EECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCC-ChhHHHHHHHHHhccccC
Q 008468 362 -----------TVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGW-TSEDSELLNRIQSNKKST 429 (564)
Q Consensus 362 -----------~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~-s~~~~~~l~~l~~~~~~~ 429 (564)
.-.|..++|+||+|-.........-- .........|.|++|-.+--+. +.++...++..+... .
T Consensus 452 a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l--~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~--~ 527 (587)
T KOG0781|consen 452 AGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSL--AKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADH--S 527 (587)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHH--HHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcC--C
Confidence 11456799999999775432221110 0112367899999998765432 233333333322221 1
Q ss_pred CCCCCEEEEEecCCCCCCC
Q 008468 430 ESSTPMILVINKIDCAPSA 448 (564)
Q Consensus 430 ~~~~PvIvV~NK~DL~~~~ 448 (564)
.+..---++++|+|-.+..
T Consensus 528 ~~r~id~~~ltk~dtv~d~ 546 (587)
T KOG0781|consen 528 TPRLIDGILLTKFDTVDDK 546 (587)
T ss_pred CccccceEEEEeccchhhH
Confidence 1112235789999987653
No 431
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=96.00 E-value=0.1 Score=51.81 Aligned_cols=103 Identities=11% Similarity=0.136 Sum_probs=62.3
Q ss_pred CeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCC
Q 008468 365 GVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDC 444 (564)
Q Consensus 365 g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL 444 (564)
+..+.|+||.|...... ...+..+|+||+=.-.+.-+..+-.+.++.+.+..+......|.-|+.|++.-
T Consensus 83 ~~d~VlvDleG~as~~~----------~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~ 152 (231)
T PF07015_consen 83 GFDFVLVDLEGGASELN----------DYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPA 152 (231)
T ss_pred CCCEEEEeCCCCCchhH----------HHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCc
Confidence 45689999999754321 13367799999866555433333334555554444445678899999999974
Q ss_pred CCCCcchh--hhhcccCCcEEEEeccCCCCHHHHHH
Q 008468 445 APSASNEW--NKVGNSFNDHVFTCAVTGQGIQDLET 478 (564)
Q Consensus 445 ~~~~~~~~--~~l~~~~~~~i~iSAktg~GI~eL~~ 478 (564)
........ .++.+. .|++.++..+...+.+++.
T Consensus 153 ~~~~~~~~~~~e~~~~-lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 153 ARLTRAQRIISEQLES-LPVLDTELHERDAFRAMFS 187 (231)
T ss_pred chhhHHHHHHHHHHhc-CCccccccccHHHHHHHHH
Confidence 32211111 222233 4678888877777777665
No 432
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.00 E-value=0.087 Score=55.60 Aligned_cols=48 Identities=23% Similarity=0.228 Sum_probs=29.6
Q ss_pred CCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCCh
Q 008468 364 CGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTS 413 (564)
Q Consensus 364 ~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~ 413 (564)
++..++|+||.|-...+...-.+..+-+ -.-..|-+|+|+|++-+...
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~--~ai~Pd~vi~VmDasiGQaa 229 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVS--KAIKPDEIIFVMDASIGQAA 229 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHH--hhcCCCeEEEEEeccccHhH
Confidence 3466999999997643322211111111 13458999999999876443
No 433
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.98 E-value=0.07 Score=60.23 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=19.5
Q ss_pred EEEEcCCCCChhHHHHHhhcC
Q 008468 321 IAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 321 I~IvG~~nvGKSSLlN~L~~~ 341 (564)
+.|.|++|+|||.|++++...
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~ 337 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHY 337 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999875
No 434
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.93 E-value=0.069 Score=55.08 Aligned_cols=168 Identities=14% Similarity=0.190 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCC
Q 008468 297 AMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGI 376 (564)
Q Consensus 297 ~l~~~l~~ll~~~~~~~~~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~ 376 (564)
.+.+.+++++...++.+ -..++|+|++|.|||++++++....... .+ +. ....+|..+.+|.-
T Consensus 44 ~~L~~L~~Ll~~P~~~R----mp~lLivG~snnGKT~Ii~rF~~~hp~~-~d-~~-----------~~~~PVv~vq~P~~ 106 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHR----MPNLLIVGDSNNGKTMIIERFRRLHPPQ-SD-ED-----------AERIPVVYVQMPPE 106 (302)
T ss_pred HHHHHHHHHHhCCcccC----CCceEEecCCCCcHHHHHHHHHHHCCCC-CC-CC-----------CccccEEEEecCCC
Confidence 34455666665443322 2569999999999999999998765321 11 11 01236777777654
Q ss_pred CCc----hhHHHHhh------------hhhhhhhhhcCcEEEEEecCCCC----CChhHHHHHHHHHhccccCCCCCCEE
Q 008468 377 RET----DDIVEKIG------------VERSEAVALGADVIIMTVSAVDG----WTSEDSELLNRIQSNKKSTESSTPMI 436 (564)
Q Consensus 377 ~~~----~~~ie~~~------------i~~~~~~l~~aD~vl~ViD~s~~----~s~~~~~~l~~l~~~~~~~~~~~PvI 436 (564)
-+. ....+.++ .......++...+=++++|=-+. ...+..+.++.+... .+...+|+|
T Consensus 107 p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L--~NeL~ipiV 184 (302)
T PF05621_consen 107 PDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFL--GNELQIPIV 184 (302)
T ss_pred CChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHH--hhccCCCeE
Confidence 321 12222222 12233457778888888886442 222233344433322 223578999
Q ss_pred EEEecCCCCCCCcchhhhhcccCCcEEEEe-ccCCCCHHHHHHHHHHHhhc
Q 008468 437 LVINKIDCAPSASNEWNKVGNSFNDHVFTC-AVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 437 vV~NK~DL~~~~~~~~~~l~~~~~~~i~iS-Aktg~GI~eL~~~L~~~l~~ 486 (564)
.|+++-=. ..-. ...++...|.++ .+. =+.+.....|+..+...+..
T Consensus 185 ~vGt~~A~-~al~-~D~QLa~RF~~~-~Lp~W~~d~ef~~LL~s~e~~LPL 232 (302)
T PF05621_consen 185 GVGTREAY-RALR-TDPQLASRFEPF-ELPRWELDEEFRRLLASFERALPL 232 (302)
T ss_pred EeccHHHH-HHhc-cCHHHHhccCCc-cCCCCCCCcHHHHHHHHHHHhCCC
Confidence 99876211 0000 002334444221 111 11345566666666665543
No 435
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=95.87 E-value=0.019 Score=55.78 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCChhHHHHHhhc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
+-+.++|+.|+||||+.+.+..
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred eeEEEEccCCCCcchHHHHHHH
Confidence 5578999999999999999864
No 436
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=95.81 E-value=0.054 Score=46.40 Aligned_cols=71 Identities=15% Similarity=0.137 Sum_probs=41.9
Q ss_pred EEEEc-CCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCc
Q 008468 321 IAIVG-RPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGAD 399 (564)
Q Consensus 321 I~IvG-~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD 399 (564)
|++.| ..|+||||+.-.|...-.. ...+-.-.| .+. ...+.++|+|+..... ....+..+|
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~--~~~~vl~~d-----~d~-~~d~viiD~p~~~~~~----------~~~~l~~ad 63 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR--RGKRVLLID-----LDP-QYDYIIIDTPPSLGLL----------TRNALAAAD 63 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh--CCCcEEEEe-----CCC-CCCEEEEeCcCCCCHH----------HHHHHHHCC
Confidence 56666 6799999987766543210 000000001 110 1678999999965322 123477899
Q ss_pred EEEEEecCCC
Q 008468 400 VIIMTVSAVD 409 (564)
Q Consensus 400 ~vl~ViD~s~ 409 (564)
.++++++.+.
T Consensus 64 ~viv~~~~~~ 73 (104)
T cd02042 64 LVLIPVQPSP 73 (104)
T ss_pred EEEEeccCCH
Confidence 9999998754
No 437
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.74 E-value=0.0078 Score=59.35 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=17.3
Q ss_pred cEEEEEcCCCCChhHHHHHhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWS 339 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~ 339 (564)
+-.+|+|+||+||||..+-+.
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~ 23 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMS 23 (290)
T ss_pred cceEEEcCCCCCccchhhhHH
Confidence 446899999999999987653
No 438
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.72 E-value=0.0078 Score=55.02 Aligned_cols=51 Identities=27% Similarity=0.318 Sum_probs=32.6
Q ss_pred EEEEcCCCCChhHHHHHhhcCCc-ceeccccCeeEEEEEEEEEECCeeeEEEeC
Q 008468 321 IAIVGRPNVGKSSLLNAWSKSER-AIVTEIAGTTRDVIEASVTVCGVPVTLLDT 373 (564)
Q Consensus 321 I~IvG~~nvGKSSLlN~L~~~~~-~~vs~~~gtT~d~~~~~~~~~g~~i~LiDT 373 (564)
|+|+|++|+|||||++.|..... ......+.||+..... ..+|..+.++|.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~--e~~g~~~~~v~~ 53 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPG--EVDGVDYHFVSK 53 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCC--ccCCceeEEeCH
Confidence 68999999999999999998631 1222334455543222 235666666654
No 439
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.71 E-value=0.084 Score=56.70 Aligned_cols=115 Identities=19% Similarity=0.250 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHH-hhhhhh-hcCCcEEEEEcCCCCChhHHHHHhhcC----Cc--ceecc--ccC------------
Q 008468 294 KIHAMSQDVENALET-ANYDKL-LQSGLQIAIVGRPNVGKSSLLNAWSKS----ER--AIVTE--IAG------------ 351 (564)
Q Consensus 294 ~l~~l~~~l~~ll~~-~~~~~~-~~~~ikI~IvG~~nvGKSSLlN~L~~~----~~--~~vs~--~~g------------ 351 (564)
-++-+.++|-.++.. ...-.. .+.+..|.++|--|+||||..-.|... .. ..|+- |.+
T Consensus 74 ~iKiV~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q 153 (451)
T COG0541 74 FIKIVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQ 153 (451)
T ss_pred HHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHH
Confidence 355667777777764 111122 345678999999999999987666532 11 11110 000
Q ss_pred eeEEEEEE-----EE----------EECCeeeEEEeCCCCCCchh-HHHHhhhhhhhhhhhcCcEEEEEecCCCCC
Q 008468 352 TTRDVIEA-----SV----------TVCGVPVTLLDTAGIRETDD-IVEKIGVERSEAVALGADVIIMTVSAVDGW 411 (564)
Q Consensus 352 tT~d~~~~-----~~----------~~~g~~i~LiDTpG~~~~~~-~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~ 411 (564)
+..+++.. .+ ...++.+.|+||+|-...++ +.++. +.....-+.|=+++|+|+.-+.
T Consensus 154 ~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El---~~Ik~~~~P~E~llVvDam~GQ 226 (451)
T COG0541 154 VGVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDEL---KEIKEVINPDETLLVVDAMIGQ 226 (451)
T ss_pred cCCceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHH---HHHHhhcCCCeEEEEEecccch
Confidence 00111110 00 11235689999999654432 22221 1223356789999999998764
No 440
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.65 E-value=0.033 Score=52.85 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhHHHHHhhcC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~ 341 (564)
+|.|.|+||+|||||++.++..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999999999998864
No 441
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=95.61 E-value=0.091 Score=56.32 Aligned_cols=159 Identities=17% Similarity=0.241 Sum_probs=82.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC------------cc---eeccccCeeEEEE--------EEEEEEC-C--eeeEE
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE------------RA---IVTEIAGTTRDVI--------EASVTVC-G--VPVTL 370 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~------------~~---~vs~~~gtT~d~~--------~~~~~~~-g--~~i~L 370 (564)
..+-|++|||.-+|||||+.++...- ++ ....-.|.|.-+. ...+.++ + .++.+
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 34889999999999999999987521 11 0111222222111 1123332 3 56788
Q ss_pred EeCCCCCCch------------------------hHHHHhhhhhhhhhhhc-Cc-EEEEEecCCCCCCh------hHHHH
Q 008468 371 LDTAGIRETD------------------------DIVEKIGVERSEAVALG-AD-VIIMTVSAVDGWTS------EDSEL 418 (564)
Q Consensus 371 iDTpG~~~~~------------------------~~ie~~~i~~~~~~l~~-aD-~vl~ViD~s~~~s~------~~~~~ 418 (564)
+|+.|+.-.. ......| ++..+.+ +- ++++.-|.+-..-. .+.+.
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiG---T~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEerv 172 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIG---TRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERV 172 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhc---ccceeccCCceeEEEecCCCccCCChHHHHHHHHHH
Confidence 9999874100 0111111 1222332 22 34555565532111 12234
Q ss_pred HHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhcc-cCCcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 419 LNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGN-SFNDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 419 l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~-~~~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
++.+.. .++|+++++|-.+-........ +++.+ ...++++++|..- .-+++...|.+.+.
T Consensus 173 I~ELk~------igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~l-~~~DI~~Il~~vLy 234 (492)
T PF09547_consen 173 IEELKE------IGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQL-REEDITRILEEVLY 234 (492)
T ss_pred HHHHHH------hCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHHc-CHHHHHHHHHHHHh
Confidence 444444 3799999999887443322222 34443 3368899988653 34555555555553
No 442
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.59 E-value=0.011 Score=55.90 Aligned_cols=52 Identities=31% Similarity=0.383 Sum_probs=33.0
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDT 373 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDT 373 (564)
.|+|+|++|||||||++.|.+...........+|+...... .++..+.++++
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~ 54 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSK 54 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecH
Confidence 58999999999999999999865333323334454333221 34555555553
No 443
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.53 E-value=0.54 Score=50.35 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
+..+.|.|++|+|||++++.+...
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~ 78 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEE 78 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999864
No 444
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.52 E-value=0.021 Score=60.30 Aligned_cols=73 Identities=22% Similarity=0.258 Sum_probs=50.2
Q ss_pred hhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcccCCcEEEEecc
Q 008468 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGNSFNDHVFTCAV 468 (564)
Q Consensus 392 ~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~~~~~~i~iSAk 468 (564)
+..+..+|+||.|+|+.+|.+....+.-..+... ..++..|+|+||+||++....+. .-+...++.+++.++.
T Consensus 141 rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~----~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast 215 (435)
T KOG2484|consen 141 RKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQA----HGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKAST 215 (435)
T ss_pred HHHHhhhheEEEeeeccCCCCCCChhHHHHHHhc----cCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeeccc
Confidence 4457889999999999998776554444444322 23478999999999998776653 4455566665554443
No 445
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.48 E-value=0.0091 Score=59.62 Aligned_cols=26 Identities=38% Similarity=0.539 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCc
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSER 343 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~ 343 (564)
|=-|+|+|++|||||||+|.+.|-..
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33499999999999999999998654
No 446
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.41 E-value=0.013 Score=56.46 Aligned_cols=53 Identities=21% Similarity=0.139 Sum_probs=36.2
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEe
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLD 372 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiD 372 (564)
+.-|+|+|++|||||||+++|+..........+.|||..-. .+.+|....+++
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~--gE~~G~dY~fvs 56 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRP--GDEEGKTYFFLT 56 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCC--CCCCCceeEeCC
Confidence 34589999999999999999998753333445667765432 234566666653
No 447
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.41 E-value=0.5 Score=49.94 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChhHHHHHhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
-.+.|.|+||+|||++++.+...
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~~ 63 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMKE 63 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
No 448
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.41 E-value=0.012 Score=57.00 Aligned_cols=26 Identities=35% Similarity=0.574 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.+-.|+|+|++|+|||||++.|.+..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45679999999999999999999864
No 449
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.36 E-value=0.013 Score=57.26 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEE
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRD 355 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d 355 (564)
.+.-|+|+|++|||||||++.|...........+.||+.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~ 50 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRP 50 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCC
Confidence 445689999999999999999986543333344455543
No 450
>PRK04195 replication factor C large subunit; Provisional
Probab=95.31 E-value=0.3 Score=54.08 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
--+.|.|+||+||||++++|...-
T Consensus 40 ~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999998753
No 451
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.29 E-value=0.013 Score=51.55 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHhhcC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.|+|.|+|||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999875
No 452
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.14 E-value=0.087 Score=54.29 Aligned_cols=86 Identities=22% Similarity=0.268 Sum_probs=55.3
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh----hhhcccCCcEEEEeccCC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW----NKVGNSFNDHVFTCAVTG 470 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~----~~l~~~~~~~i~iSAktg 470 (564)
+.+.|-+++|+.+.+|..... .+.+.+-.. ...++.-++|+||+||.+...... ..+.....+++.+|++++
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~--~ldR~Lv~a--e~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~ 152 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTN--LLDRYLVLA--EAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNG 152 (301)
T ss_pred ccccceEEEEEeccCCCCCHH--HHHHHHHHH--HHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCc
Confidence 455677777777776533222 223221111 123566678899999987765542 233345568899999999
Q ss_pred CCHHHHHHHHHHHh
Q 008468 471 QGIQDLETAIMKIV 484 (564)
Q Consensus 471 ~GI~eL~~~L~~~l 484 (564)
.|+++|.+.+....
T Consensus 153 ~~~~~l~~~l~~~~ 166 (301)
T COG1162 153 DGLEELAELLAGKI 166 (301)
T ss_pred ccHHHHHHHhcCCe
Confidence 99999999887654
No 453
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.13 E-value=0.014 Score=55.64 Aligned_cols=27 Identities=41% Similarity=0.542 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCc
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSER 343 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~ 343 (564)
.+=+|+|+|++|+|||||+|.+.|-+.
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhccC
Confidence 345799999999999999999998653
No 454
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.13 E-value=0.012 Score=56.24 Aligned_cols=53 Identities=30% Similarity=0.429 Sum_probs=37.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEe
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLD 372 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiD 372 (564)
.|.-++|.||+|||||||+++|+... .+--.+..|||..-.+ +.+|..+.+++
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~g--Ev~G~dY~Fvs 55 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPG--EVDGVDYFFVT 55 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCC--CcCCceeEeCC
Confidence 35568999999999999999999887 4444455566654332 34666666664
No 455
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.04 E-value=0.018 Score=51.79 Aligned_cols=27 Identities=41% Similarity=0.495 Sum_probs=23.8
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..+=.++|+|+.|+|||||++.|++..
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEccCCCccccceeeecccc
Confidence 345679999999999999999999975
No 456
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.03 E-value=0.051 Score=56.52 Aligned_cols=148 Identities=20% Similarity=0.301 Sum_probs=75.0
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC----cceecccc----------------CeeEEEEEEE-------EEE-----
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE----RAIVTEIA----------------GTTRDVIEAS-------VTV----- 363 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~----~~~vs~~~----------------gtT~d~~~~~-------~~~----- 363 (564)
..++-|+++|-.|+||||-+-.|...- ...+---. ....+++... +.+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 347889999999999999987776421 11100000 0011222211 111
Q ss_pred ---CCeeeEEEeCCCCCCc-hhHHHHhhhhhhhhhhhcC-----cEEEEEecCCCCCCh-hHHHHHHHHHhccccCCCCC
Q 008468 364 ---CGVPVTLLDTAGIRET-DDIVEKIGVERSEAVALGA-----DVIIMTVSAVDGWTS-EDSELLNRIQSNKKSTESST 433 (564)
Q Consensus 364 ---~g~~i~LiDTpG~~~~-~~~ie~~~i~~~~~~l~~a-----D~vl~ViD~s~~~s~-~~~~~l~~l~~~~~~~~~~~ 433 (564)
.+..+.|+||+|-... .+.++++ ++-...+... +=+++|+|++-+... .+.+.++.... .
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL--~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~--------l 286 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDEL--KKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVG--------L 286 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHH--HHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcC--------C
Confidence 3466999999996643 2333322 1112223333 338888899876432 23344443221 1
Q ss_pred CEEEEEecCCCCCCCcchhhhhcc-cCCcEEEEeccCCCCHHHHH
Q 008468 434 PMILVINKIDCAPSASNEWNKVGN-SFNDHVFTCAVTGQGIQDLE 477 (564)
Q Consensus 434 PvIvV~NK~DL~~~~~~~~~~l~~-~~~~~i~iSAktg~GI~eL~ 477 (564)
-=+++||+|-...-.... .+.. ...|+..+. -|+++++|.
T Consensus 287 -~GiIlTKlDgtAKGG~il-~I~~~l~~PI~fiG--vGE~~~DL~ 327 (340)
T COG0552 287 -DGIILTKLDGTAKGGIIL-SIAYELGIPIKFIG--VGEGYDDLR 327 (340)
T ss_pred -ceEEEEecccCCCcceee-eHHHHhCCCEEEEe--CCCChhhcc
Confidence 246899999432211111 1111 124555554 367777764
No 457
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=95.03 E-value=0.049 Score=53.61 Aligned_cols=40 Identities=23% Similarity=0.439 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCcEEEEEcCCCCChhHHHHHh
Q 008468 297 AMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAW 338 (564)
Q Consensus 297 ~l~~~l~~ll~~~~~~~~~~~~ikI~IvG~~nvGKSSLlN~L 338 (564)
.+.++++..+...+ +..+..+|+.++|..-+|||||+..+
T Consensus 20 ri~~eierql~rdk--k~arrelkllllgtgesgkstfikqm 59 (359)
T KOG0085|consen 20 RINQEIERQLRRDK--KDARRELKLLLLGTGESGKSTFIKQM 59 (359)
T ss_pred HHHHHHHHHHHHHh--HhhhhhheeeeecCCCcchhhHHHHH
Confidence 34445555444332 23355699999999999999999764
No 458
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.98 E-value=0.016 Score=57.44 Aligned_cols=27 Identities=41% Similarity=0.577 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCc
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSER 343 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~ 343 (564)
.|=-|+|+|++|||||||+|.+.+-+.
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 344599999999999999999988663
No 459
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=94.89 E-value=0.043 Score=59.72 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=52.3
Q ss_pred hhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcccCCcEEEEeccC
Q 008468 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGNSFNDHVFTCAVT 469 (564)
Q Consensus 392 ~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~~~~~~i~iSAkt 469 (564)
...+..+|+||.++|+.++.-+....+...+... ...+..++++||+||.+...... +-+..+..+++..||..
T Consensus 169 WRVlErSDivvqIVDARnPllfr~~dLe~Yvke~----d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~ 244 (562)
T KOG1424|consen 169 WRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEV----DPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALA 244 (562)
T ss_pred HHHHhhcceEEEEeecCCccccCChhHHHHHhcc----ccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEeccc
Confidence 4568999999999999998765544433333322 34567899999999988765543 33445557888999886
No 460
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.86 E-value=0.022 Score=44.82 Aligned_cols=20 Identities=40% Similarity=0.491 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChhHHHHHhh
Q 008468 320 QIAIVGRPNVGKSSLLNAWS 339 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~ 339 (564)
..+|.|+.|+|||||+.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999875
No 461
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=94.84 E-value=0.061 Score=46.78 Aligned_cols=100 Identities=16% Similarity=0.066 Sum_probs=51.4
Q ss_pred EcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEE
Q 008468 324 VGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIM 403 (564)
Q Consensus 324 vG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ 403 (564)
-+..|+||||+.-.|...-... ....-.-.|... . .+..+.++|||+..... ....+..+|.+++
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~-~~~~~~l~d~d~---~-~~~D~IIiDtpp~~~~~----------~~~~l~~aD~vlv 70 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKE-AGRRVLLVDLDL---Q-FGDDYVVVDLGRSLDEV----------SLAALDQADRVFL 70 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhc-CCCcEEEEECCC---C-CCCCEEEEeCCCCcCHH----------HHHHHHHcCeEEE
Confidence 3568999999776665321100 000000000000 0 11278999999865321 1234788999999
Q ss_pred EecCCCCCChhHHHHHHHHHhccccCCC-CCCEEEEEec
Q 008468 404 TVSAVDGWTSEDSELLNRIQSNKKSTES-STPMILVINK 441 (564)
Q Consensus 404 ViD~s~~~s~~~~~~l~~l~~~~~~~~~-~~PvIvV~NK 441 (564)
+++.+......-.+.++.+.... .. ...+.+|+|+
T Consensus 71 vv~~~~~s~~~~~~~~~~l~~~~---~~~~~~~~lVvNr 106 (106)
T cd03111 71 VTQQDLPSIRNAKRLLELLRVLD---YSLPAKIELVLNR 106 (106)
T ss_pred EecCChHHHHHHHHHHHHHHHcC---CCCcCceEEEecC
Confidence 99876532222223333333321 11 3457788885
No 462
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=94.73 E-value=0.18 Score=47.29 Aligned_cols=64 Identities=11% Similarity=0.096 Sum_probs=39.2
Q ss_pred eeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCC
Q 008468 367 PVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCA 445 (564)
Q Consensus 367 ~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~ 445 (564)
.+.++|||+..... ....+..+|.++++++.+.. +.... ..++.+... ......+|+|++|..
T Consensus 64 d~viiD~p~~~~~~----------~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~-----~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIERG----------FITAIAPADEALLVTTPEIS-SLRDADRVKGLLEAL-----GIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcHH----------HHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHc-----CCceEEEEEeCCccc
Confidence 68999999854321 12346789999999988653 23222 333333221 123467899999865
Q ss_pred C
Q 008468 446 P 446 (564)
Q Consensus 446 ~ 446 (564)
.
T Consensus 128 ~ 128 (179)
T cd02036 128 M 128 (179)
T ss_pred c
Confidence 3
No 463
>PRK07261 topology modulation protein; Provisional
Probab=94.52 E-value=0.026 Score=53.58 Aligned_cols=23 Identities=39% Similarity=0.601 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChhHHHHHhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.+|+|+|++|+|||||...|...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998754
No 464
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=94.47 E-value=0.13 Score=52.63 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=45.5
Q ss_pred eeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCCh----hHHHHHHHHHhccccCCCCCCEEEEEecC
Q 008468 367 PVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTS----EDSELLNRIQSNKKSTESSTPMILVINKI 442 (564)
Q Consensus 367 ~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~----~~~~~l~~l~~~~~~~~~~~PvIvV~NK~ 442 (564)
...++.|.|+-++......+........--.-|+++-|+|+-+.... .....|....... ...--+++||.
T Consensus 147 D~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~Qi-----A~AD~II~NKt 221 (391)
T KOG2743|consen 147 DHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQI-----ALADRIIMNKT 221 (391)
T ss_pred ceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHH-----hhhheeeeccc
Confidence 36789999999887776666544444333456999999998642110 0001121110000 01124678999
Q ss_pred CCCCCCcc
Q 008468 443 DCAPSASN 450 (564)
Q Consensus 443 DL~~~~~~ 450 (564)
|+.+....
T Consensus 222 Dli~~e~~ 229 (391)
T KOG2743|consen 222 DLVSEEEV 229 (391)
T ss_pred cccCHHHH
Confidence 99987543
No 465
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.47 E-value=0.13 Score=56.74 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=22.4
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhc
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
..|-||+|+|.+|+||||+++.|+.
T Consensus 376 ~kGekVaIvG~nGsGKSTilr~Llr 400 (591)
T KOG0057|consen 376 PKGEKVAIVGSNGSGKSTILRLLLR 400 (591)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3566999999999999999999985
No 466
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.46 E-value=0.026 Score=55.01 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=23.2
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..+ .++|+|+.|+|||||++.|.|..
T Consensus 24 ~~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 24 GPG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 457 89999999999999999999864
No 467
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.40 E-value=0.028 Score=50.87 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=19.6
Q ss_pred EEEEcCCCCChhHHHHHhhcCC
Q 008468 321 IAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 321 I~IvG~~nvGKSSLlN~L~~~~ 342 (564)
|+++|+||||||||...|....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 7899999999999999998543
No 468
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=94.40 E-value=0.35 Score=48.56 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.-+|.+-|..|+||||++.+++..-
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHH
Confidence 3679999999999999999999754
No 469
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.39 E-value=0.043 Score=51.65 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=17.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.+-.++|.|++|+|||+|++++...-
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34569999999999999999987653
No 470
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.38 E-value=0.026 Score=54.05 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChhHHHHHhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.+|+|+|+|||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999887
No 471
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.38 E-value=0.032 Score=53.56 Aligned_cols=27 Identities=33% Similarity=0.367 Sum_probs=23.0
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
+.+-.++|+|++|+|||||+++|++.-
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345679999999999999999998753
No 472
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.37 E-value=0.021 Score=53.31 Aligned_cols=22 Identities=36% Similarity=0.703 Sum_probs=18.0
Q ss_pred EEEEEcCCCCChhHHHHHhhcC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~ 341 (564)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999876
No 473
>PRK08118 topology modulation protein; Reviewed
Probab=94.31 E-value=0.03 Score=52.98 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHhhcCC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
+|+|+|++|||||||...|...-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999998653
No 474
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.26 E-value=0.039 Score=48.26 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSER 343 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~ 343 (564)
-.++|+|++|+||||++..++..-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4689999999999999999987653
No 475
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.25 E-value=0.083 Score=52.47 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=23.4
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..+.-|+|.|++|+|||||++.|.+.-
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998754
No 476
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.24 E-value=0.063 Score=51.17 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChhHHHHHhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.-++|+|++|+|||||+++|+..
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHH
Confidence 46899999999999999999875
No 477
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.23 E-value=0.034 Score=44.43 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=19.4
Q ss_pred EEEEcCCCCChhHHHHHhhcC
Q 008468 321 IAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 321 I~IvG~~nvGKSSLlN~L~~~ 341 (564)
|++.|.+|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999875
No 478
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=94.16 E-value=0.33 Score=52.46 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.++-|+|.|..|+|||||.+.|.+.
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~l 235 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYL 235 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5688999999999999999998653
No 479
>COG1161 Predicted GTPases [General function prediction only]
Probab=94.16 E-value=0.08 Score=55.57 Aligned_cols=77 Identities=27% Similarity=0.341 Sum_probs=53.3
Q ss_pred hhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhccc-CCcEEEEeccC
Q 008468 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGNS-FNDHVFTCAVT 469 (564)
Q Consensus 393 ~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~~-~~~~i~iSAkt 469 (564)
..+..+|+|+.|+|+.++.+.....+-+ +.. ++|.++|+||+||.+...... +.+... ....+.+|++.
T Consensus 30 ~~~~~~d~vvevvDar~P~~s~~~~l~~-~v~-------~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~~ 101 (322)
T COG1161 30 EVLKSVDVVVEVVDARDPLGTRNPELER-IVK-------EKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKS 101 (322)
T ss_pred HhcccCCEEEEEEeccccccccCccHHH-HHc-------cCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEeec
Confidence 4578999999999999987665543322 222 456699999999988655432 333333 24568888888
Q ss_pred CCCHHHHH
Q 008468 470 GQGIQDLE 477 (564)
Q Consensus 470 g~GI~eL~ 477 (564)
+.+...+.
T Consensus 102 ~~~~~~i~ 109 (322)
T COG1161 102 RQGGKKIR 109 (322)
T ss_pred ccCccchH
Confidence 87776666
No 480
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.12 E-value=0.04 Score=52.86 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
-.|+|+|++|+|||||++.|.+..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 468999999999999999997754
No 481
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.11 E-value=0.034 Score=54.28 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.7
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..+.-|+|+|++|+|||||++.|.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999875
No 482
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=94.11 E-value=0.056 Score=54.94 Aligned_cols=60 Identities=30% Similarity=0.345 Sum_probs=38.7
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcce-ec-cccCeeEEEEEEEEEE---CCeeeEEEeCCCCCC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAI-VT-EIAGTTRDVIEASVTV---CGVPVTLLDTAGIRE 378 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~-vs-~~~gtT~d~~~~~~~~---~g~~i~LiDTpG~~~ 378 (564)
.-|.|+|+..+|||.|+|.|++....+ +. .....|.......... ++..+.++||-|+.+
T Consensus 22 ~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 22 AVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp EEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTT
T ss_pred EEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccc
Confidence 458999999999999999999854322 11 1223344332221112 356789999999976
No 483
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.11 E-value=0.16 Score=52.52 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=21.6
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhc
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
+.++-|+|.|++|||||||++.|.+
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999988754
No 484
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.057 Score=61.08 Aligned_cols=45 Identities=27% Similarity=0.413 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcCCcEEEEEcCCCCChhHHHHHhhc
Q 008468 295 IHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 295 l~~l~~~l~~ll~~~~~~~~~~~~ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
|.+.++.+-+.+.-..+... .+|.-++++||||||||||-+++..
T Consensus 328 LekVKeRIlEyLAV~~l~~~-~kGpILcLVGPPGVGKTSLgkSIA~ 372 (782)
T COG0466 328 LEKVKERILEYLAVQKLTKK-LKGPILCLVGPPGVGKTSLGKSIAK 372 (782)
T ss_pred chhHHHHHHHHHHHHHHhcc-CCCcEEEEECCCCCCchhHHHHHHH
Confidence 34455555555554443332 3445699999999999999999864
No 485
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.06 E-value=0.041 Score=52.61 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.6
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhc
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
...+-.++|+|+.|+|||||++.++.
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 35567899999999999999999874
No 486
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=93.90 E-value=0.043 Score=55.00 Aligned_cols=31 Identities=23% Similarity=0.494 Sum_probs=26.1
Q ss_pred hhhhhcCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 311 YDKLLQSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 311 ~~~~~~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
+..+...+++++|+|++|+|||+|+-.|+..
T Consensus 6 ~~~l~~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 6 RNSLLKDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred hhHhcCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 3445677899999999999999999988864
No 487
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.89 E-value=0.043 Score=52.53 Aligned_cols=27 Identities=26% Similarity=0.387 Sum_probs=23.8
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..+=.++|+|+.|+|||||++.|.|..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 455679999999999999999999865
No 488
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.85 E-value=0.046 Score=53.48 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=23.6
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|+|||||++.|.|..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455679999999999999999999864
No 489
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=93.84 E-value=0.039 Score=57.96 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCc
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSER 343 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~ 343 (564)
-++++||+|||||||++.+.|-+.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 489999999999999999998653
No 490
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.83 E-value=0.044 Score=53.43 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=23.1
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.++..|+|.|++|||||||.+.|.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999875
No 491
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.83 E-value=0.045 Score=51.85 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHhhcCC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.++|+|++|||||||++.|...-
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999997753
No 492
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.80 E-value=0.048 Score=53.14 Aligned_cols=27 Identities=33% Similarity=0.385 Sum_probs=23.5
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|+|||||++.|.|..
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345579999999999999999999864
No 493
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.76 E-value=1.5 Score=47.36 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
+-.|++.|+||+|||++..++...
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHH
Confidence 446999999999999999999875
No 494
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.70 E-value=0.051 Score=53.21 Aligned_cols=27 Identities=41% Similarity=0.558 Sum_probs=23.5
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|+|||||++.|+|..
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 345579999999999999999999864
No 495
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.69 E-value=0.051 Score=53.98 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=23.5
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|+|||||++.|.|..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445579999999999999999999864
No 496
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.68 E-value=0.052 Score=52.72 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=23.6
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|+|||||++.|+|..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455679999999999999999999864
No 497
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.65 E-value=0.046 Score=52.85 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.+=-|+++|++|||||||+|.+.|-
T Consensus 30 ~ge~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 30 SGELVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred CCCEEEEEcCCCccHHHHHHHHhcC
Confidence 3445899999999999999999884
No 498
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=93.62 E-value=0.42 Score=45.17 Aligned_cols=66 Identities=20% Similarity=0.198 Sum_probs=43.1
Q ss_pred CCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecC
Q 008468 364 CGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKI 442 (564)
Q Consensus 364 ~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~ 442 (564)
+.+.+.++|||+.... . ....+..+|.+++++..+.. +..+. +.++.+.. .+.|+.+|+||+
T Consensus 91 ~~~d~viiDtpp~~~~--~--------~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~------~~~~~~vV~N~~ 153 (179)
T cd03110 91 EGAELIIIDGPPGIGC--P--------VIASLTGADAALLVTEPTPS-GLHDLERAVELVRH------FGIPVGVVINKY 153 (179)
T ss_pred cCCCEEEEECcCCCcH--H--------HHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHH------cCCCEEEEEeCC
Confidence 4567899999965421 1 12346889999999988753 33333 33333322 246789999999
Q ss_pred CCCC
Q 008468 443 DCAP 446 (564)
Q Consensus 443 DL~~ 446 (564)
|...
T Consensus 154 ~~~~ 157 (179)
T cd03110 154 DLND 157 (179)
T ss_pred CCCc
Confidence 9754
No 499
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.59 E-value=0.05 Score=47.90 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=19.4
Q ss_pred EEEEcCCCCChhHHHHHhhcC
Q 008468 321 IAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 321 I~IvG~~nvGKSSLlN~L~~~ 341 (564)
|+|.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999875
No 500
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.58 E-value=0.056 Score=51.81 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..+=.++|+|+.|+|||||++.|.|..
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345569999999999999999999864
Done!