Query 008468
Match_columns 564
No_of_seqs 514 out of 3595
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 04:16:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gee_A MNME, tRNA modification 100.0 1E-103 3E-108 858.4 41.8 465 86-564 9-476 (476)
2 3geh_A MNME, tRNA modification 100.0 2E-103 8E-108 852.5 38.1 455 91-564 6-462 (462)
3 1xzp_A Probable tRNA modificat 100.0 6.6E-94 2.2E-98 781.8 39.0 450 90-564 31-482 (482)
4 2gj8_A MNME, tRNA modification 99.9 1.5E-24 5.1E-29 203.5 14.2 163 317-485 3-165 (172)
5 2qtf_A Protein HFLX, GTP-bindi 99.9 1.1E-23 3.9E-28 221.6 20.1 249 231-490 89-358 (364)
6 1wf3_A GTP-binding protein; GT 99.9 4.1E-23 1.4E-27 212.1 15.7 163 319-486 8-173 (301)
7 3iev_A GTP-binding protein ERA 99.9 1.6E-22 5.5E-27 208.2 20.0 164 319-487 11-183 (308)
8 2dyk_A GTP-binding protein; GT 99.9 2.4E-22 8.2E-27 183.9 14.8 158 319-484 2-160 (161)
9 2www_A Methylmalonic aciduria 99.9 3.3E-23 1.1E-27 217.1 9.6 218 316-559 72-348 (349)
10 4dkx_A RAS-related protein RAB 99.9 6.3E-22 2.2E-26 193.7 13.6 155 318-485 13-175 (216)
11 2hjg_A GTP-binding protein ENG 99.9 2.3E-22 7.9E-27 216.7 11.2 164 317-486 174-349 (436)
12 1mky_A Probable GTP-binding pr 99.9 7.3E-22 2.5E-26 213.0 13.3 161 319-485 2-165 (439)
13 2lkc_A Translation initiation 99.9 9.4E-22 3.2E-26 183.2 12.2 159 315-488 5-173 (178)
14 3q72_A GTP-binding protein RAD 99.9 1.5E-21 5.3E-26 179.7 12.9 155 318-485 2-163 (166)
15 1upt_A ARL1, ADP-ribosylation 99.9 5.3E-21 1.8E-25 176.7 16.3 158 315-486 4-169 (171)
16 4dcu_A GTP-binding protein ENG 99.9 5.9E-22 2E-26 214.7 11.1 165 316-486 193-369 (456)
17 3tw8_B RAS-related protein RAB 99.9 1.8E-21 6.2E-26 181.3 12.9 156 317-485 8-170 (181)
18 3cph_A RAS-related protein SEC 99.9 1.8E-21 6.2E-26 187.1 13.1 171 303-485 5-181 (213)
19 2hjg_A GTP-binding protein ENG 99.9 8.5E-22 2.9E-26 212.2 12.0 161 319-485 4-164 (436)
20 2g6b_A RAS-related protein RAB 99.9 4.2E-21 1.4E-25 179.1 15.1 160 316-486 8-174 (180)
21 3tkl_A RAS-related protein RAB 99.9 6E-21 2E-25 180.8 16.2 159 317-486 15-179 (196)
22 4dhe_A Probable GTP-binding pr 99.9 2.9E-21 1E-25 187.4 13.7 164 317-486 28-211 (223)
23 2wji_A Ferrous iron transport 99.9 1.4E-21 4.7E-26 181.5 10.8 155 319-484 4-163 (165)
24 2nzj_A GTP-binding protein REM 99.9 3.6E-21 1.2E-25 178.5 13.4 158 318-485 4-168 (175)
25 4dsu_A GTPase KRAS, isoform 2B 99.9 7E-21 2.4E-25 178.8 15.3 156 318-485 4-165 (189)
26 3a1s_A Iron(II) transport prot 99.9 7.2E-21 2.5E-25 191.0 16.3 159 318-485 5-166 (258)
27 2qu8_A Putative nucleolar GTP- 99.9 7.1E-21 2.4E-25 186.4 15.9 161 317-485 28-204 (228)
28 1kao_A RAP2A; GTP-binding prot 99.9 5E-21 1.7E-25 175.4 13.8 156 318-485 3-165 (167)
29 2hxs_A RAB-26, RAS-related pro 99.9 1.9E-21 6.6E-26 181.1 11.1 160 317-486 5-173 (178)
30 1fzq_A ADP-ribosylation factor 99.8 1.2E-20 4E-25 178.0 16.5 156 316-485 14-177 (181)
31 1r8s_A ADP-ribosylation factor 99.8 5.4E-21 1.8E-25 175.7 13.6 153 319-485 1-161 (164)
32 3iby_A Ferrous iron transport 99.8 9.3E-21 3.2E-25 190.1 16.4 156 319-483 2-164 (256)
33 1u8z_A RAS-related protein RAL 99.8 7.3E-21 2.5E-25 174.5 14.2 156 318-485 4-166 (168)
34 1c1y_A RAS-related protein RAP 99.8 7.5E-21 2.6E-25 174.8 14.1 155 318-484 3-165 (167)
35 2il1_A RAB12; G-protein, GDP, 99.8 5.6E-21 1.9E-25 181.8 13.5 158 317-485 25-189 (192)
36 2j69_A Bacterial dynamin-like 99.8 3.6E-21 1.2E-25 218.4 14.4 211 257-486 15-325 (695)
37 2h57_A ADP-ribosylation factor 99.8 1E-20 3.4E-25 179.2 15.0 160 316-485 19-186 (190)
38 1zj6_A ADP-ribosylation factor 99.8 1.4E-20 4.9E-25 177.7 16.0 158 316-487 14-179 (187)
39 1ksh_A ARF-like protein 2; sma 99.8 1.1E-20 3.8E-25 177.9 14.7 157 316-486 16-180 (186)
40 2fn4_A P23, RAS-related protei 99.8 8.9E-21 3E-25 176.6 13.8 158 317-486 8-172 (181)
41 1ega_A Protein (GTP-binding pr 99.8 1.8E-20 6.3E-25 192.2 17.4 161 319-486 9-175 (301)
42 2erx_A GTP-binding protein DI- 99.8 8.1E-21 2.8E-25 175.1 13.3 157 318-485 3-166 (172)
43 2bme_A RAB4A, RAS-related prot 99.8 1.1E-20 3.7E-25 177.5 14.3 156 318-485 10-172 (186)
44 1wms_A RAB-9, RAB9, RAS-relate 99.8 3.2E-20 1.1E-24 172.7 17.1 159 318-485 7-173 (177)
45 2fu5_C RAS-related protein RAB 99.8 3.4E-21 1.2E-25 180.7 10.6 156 318-485 8-170 (183)
46 3t5g_A GTP-binding protein RHE 99.8 7.4E-21 2.5E-25 178.1 12.8 158 318-487 6-170 (181)
47 4bas_A ADP-ribosylation factor 99.8 1.2E-20 4.2E-25 179.1 14.5 161 316-486 15-189 (199)
48 1z0j_A RAB-22, RAS-related pro 99.8 7.8E-21 2.7E-25 175.2 12.7 154 318-484 6-167 (170)
49 2bov_A RAla, RAS-related prote 99.8 2.1E-20 7.1E-25 178.5 16.0 157 317-485 13-176 (206)
50 3q85_A GTP-binding protein REM 99.8 1.2E-20 4.2E-25 174.2 13.9 158 319-486 3-167 (169)
51 1mky_A Probable GTP-binding pr 99.8 1.9E-20 6.3E-25 201.9 17.1 164 317-486 179-355 (439)
52 2y8e_A RAB-protein 6, GH09086P 99.8 8E-21 2.7E-25 176.6 12.4 155 318-484 14-175 (179)
53 2h17_A ADP-ribosylation factor 99.8 1.4E-20 4.8E-25 177.0 14.2 153 316-482 19-179 (181)
54 1g16_A RAS-related protein SEC 99.8 7.3E-21 2.5E-25 175.4 12.0 157 318-486 3-165 (170)
55 2iwr_A Centaurin gamma 1; ANK 99.8 1.2E-20 4.3E-25 176.1 13.7 152 318-485 7-168 (178)
56 1f6b_A SAR1; gtpases, N-termin 99.8 1E-20 3.5E-25 181.4 13.4 154 316-483 23-196 (198)
57 1m2o_B GTP-binding protein SAR 99.8 2E-20 6.8E-25 178.0 15.2 153 317-483 22-189 (190)
58 3kkq_A RAS-related protein M-R 99.8 2.4E-20 8.1E-25 175.0 15.4 157 317-485 17-181 (183)
59 3k53_A Ferrous iron transport 99.8 1.4E-20 4.8E-25 189.8 14.8 161 318-486 3-166 (271)
60 2b6h_A ADP-ribosylation factor 99.8 2.3E-20 7.7E-25 177.9 15.5 156 316-485 27-190 (192)
61 2a9k_A RAS-related protein RAL 99.8 2.1E-20 7.3E-25 174.9 15.0 157 317-485 17-180 (187)
62 1svi_A GTP-binding protein YSX 99.8 3.3E-20 1.1E-24 175.8 16.4 159 317-485 22-194 (195)
63 3clv_A RAB5 protein, putative; 99.8 2.7E-20 9.3E-25 176.2 15.6 154 317-485 6-203 (208)
64 1r2q_A RAS-related protein RAB 99.8 1E-20 3.5E-25 174.1 12.3 156 317-484 5-167 (170)
65 1moz_A ARL1, ADP-ribosylation 99.8 2.1E-20 7.3E-25 175.0 14.4 156 316-485 16-179 (183)
66 2fg5_A RAB-22B, RAS-related pr 99.8 1.1E-20 3.8E-25 179.6 12.6 159 317-485 22-185 (192)
67 1zd9_A ADP-ribosylation factor 99.8 1.5E-20 5.1E-25 178.1 13.3 158 315-485 19-184 (188)
68 2ew1_A RAS-related protein RAB 99.8 1.8E-20 6.3E-25 180.5 14.1 158 317-485 25-188 (201)
69 1z0f_A RAB14, member RAS oncog 99.8 2.5E-20 8.4E-25 173.3 14.4 155 318-485 15-177 (179)
70 2hup_A RAS-related protein RAB 99.8 2E-20 6.9E-25 179.6 14.1 158 317-486 28-193 (201)
71 3reg_A RHO-like small GTPase; 99.8 1.5E-20 5E-25 178.7 12.9 158 316-486 21-188 (194)
72 1ek0_A Protein (GTP-binding pr 99.8 1.9E-20 6.6E-25 172.2 13.3 155 318-484 3-167 (170)
73 3cbq_A GTP-binding protein REM 99.8 3.1E-20 1.1E-24 177.7 15.1 160 317-486 22-188 (195)
74 3i8s_A Ferrous iron transport 99.8 2.5E-21 8.6E-26 196.0 7.7 160 318-486 3-169 (274)
75 2x77_A ADP-ribosylation factor 99.8 3.1E-20 1.1E-24 175.5 14.7 157 316-486 20-184 (189)
76 3pqc_A Probable GTP-binding pr 99.8 8.2E-20 2.8E-24 172.4 17.4 159 317-485 22-193 (195)
77 1z08_A RAS-related protein RAB 99.8 1.3E-20 4.4E-25 173.9 11.7 156 318-485 6-168 (170)
78 2bcg_Y Protein YP2, GTP-bindin 99.8 3.2E-20 1.1E-24 178.0 14.7 156 318-485 8-170 (206)
79 2g3y_A GTP-binding protein GEM 99.8 1.7E-20 5.9E-25 182.7 12.8 160 318-486 37-203 (211)
80 2gf0_A GTP-binding protein DI- 99.8 3.2E-20 1.1E-24 176.2 14.4 160 317-487 7-172 (199)
81 2efe_B Small GTP-binding prote 99.8 3.3E-20 1.1E-24 173.2 14.1 156 318-485 12-174 (181)
82 1z2a_A RAS-related protein RAB 99.8 1.2E-20 4.3E-25 173.5 10.9 155 318-485 5-166 (168)
83 2q3h_A RAS homolog gene family 99.8 1.8E-20 6.2E-25 178.8 12.3 157 315-485 17-194 (201)
84 2ce2_X GTPase HRAS; signaling 99.8 1.1E-19 3.8E-24 166.0 17.1 155 319-485 4-164 (166)
85 2oil_A CATX-8, RAS-related pro 99.8 3E-20 1E-24 176.2 13.7 157 317-485 24-187 (193)
86 4gzl_A RAS-related C3 botulinu 99.8 7.8E-21 2.7E-25 182.9 9.6 156 316-484 28-203 (204)
87 2a5j_A RAS-related protein RAB 99.8 2.3E-20 7.7E-25 177.1 12.3 157 317-485 20-183 (191)
88 2cjw_A GTP-binding protein GEM 99.8 2.6E-20 8.8E-25 177.9 12.4 159 318-485 6-171 (192)
89 4dcu_A GTP-binding protein ENG 99.8 1.1E-20 3.9E-25 204.6 11.0 162 318-485 23-184 (456)
90 3ihw_A Centg3; RAS, centaurin, 99.8 7.9E-20 2.7E-24 173.1 15.4 152 316-485 18-179 (184)
91 2wjg_A FEOB, ferrous iron tran 99.8 2.2E-20 7.5E-25 175.9 11.5 157 318-486 7-169 (188)
92 3c5c_A RAS-like protein 12; GD 99.8 2.3E-20 7.7E-25 177.0 11.5 158 317-485 20-185 (187)
93 1vg8_A RAS-related protein RAB 99.8 3.8E-20 1.3E-24 177.0 13.2 160 317-485 7-174 (207)
94 3bc1_A RAS-related protein RAB 99.8 3.7E-20 1.3E-24 174.2 12.9 157 318-485 11-184 (195)
95 1zbd_A Rabphilin-3A; G protein 99.8 8.7E-20 3E-24 174.4 15.6 157 318-485 8-170 (203)
96 2p5s_A RAS and EF-hand domain 99.8 5E-20 1.7E-24 176.1 13.9 159 316-485 26-196 (199)
97 2o52_A RAS-related protein RAB 99.8 1.7E-20 6E-25 179.7 10.6 157 317-485 24-187 (200)
98 2gf9_A RAS-related protein RAB 99.8 3.5E-20 1.2E-24 175.4 12.5 156 318-485 22-184 (189)
99 3con_A GTPase NRAS; structural 99.8 9E-20 3.1E-24 172.2 15.2 157 318-486 21-183 (190)
100 1ky3_A GTP-binding protein YPT 99.8 3.2E-20 1.1E-24 172.9 12.0 160 317-485 7-177 (182)
101 3t1o_A Gliding protein MGLA; G 99.8 3.3E-20 1.1E-24 175.3 12.1 158 317-485 13-191 (198)
102 2atx_A Small GTP binding prote 99.8 5E-20 1.7E-24 174.8 13.2 155 317-485 17-192 (194)
103 1x3s_A RAS-related protein RAB 99.8 1.1E-19 3.8E-24 171.7 15.5 159 317-486 14-178 (195)
104 3b1v_A Ferrous iron uptake tra 99.8 1.8E-20 6.3E-25 189.6 10.7 156 318-485 3-163 (272)
105 3dz8_A RAS-related protein RAB 99.8 1.3E-20 4.6E-25 178.7 9.0 161 316-486 21-186 (191)
106 3oes_A GTPase rhebl1; small GT 99.8 2.4E-20 8.3E-25 178.5 10.9 159 316-486 22-187 (201)
107 2atv_A RERG, RAS-like estrogen 99.8 9.3E-20 3.2E-24 173.6 14.5 156 317-485 27-190 (196)
108 3qq5_A Small GTP-binding prote 99.8 1.4E-20 4.7E-25 201.5 9.7 160 317-485 33-195 (423)
109 1mh1_A RAC1; GTP-binding, GTPa 99.8 3.7E-20 1.3E-24 173.4 11.5 155 318-486 5-180 (186)
110 3q3j_B RHO-related GTP-binding 99.8 4.4E-20 1.5E-24 179.3 11.9 158 316-486 25-203 (214)
111 3cpj_B GTP-binding protein YPT 99.8 4.2E-20 1.4E-24 180.1 11.7 157 318-486 13-176 (223)
112 2f7s_A C25KG, RAS-related prot 99.8 7.6E-20 2.6E-24 176.8 13.4 158 317-485 24-198 (217)
113 3l0i_B RAS-related protein RAB 99.8 3.2E-21 1.1E-25 184.4 3.5 157 318-485 33-195 (199)
114 3gj0_A GTP-binding nuclear pro 99.8 2E-20 6.8E-25 181.8 9.2 158 317-486 14-175 (221)
115 4djt_A GTP-binding nuclear pro 99.8 4E-20 1.4E-24 178.9 11.3 158 317-486 10-175 (218)
116 1z06_A RAS-related protein RAB 99.8 6.5E-20 2.2E-24 173.4 12.5 158 317-484 19-186 (189)
117 3bwd_D RAC-like GTP-binding pr 99.8 8.2E-21 2.8E-25 177.5 6.0 156 317-485 7-180 (182)
118 2fv8_A H6, RHO-related GTP-bin 99.8 8.5E-20 2.9E-24 175.7 13.3 157 318-487 25-201 (207)
119 3r7w_A Gtpase1, GTP-binding pr 99.8 3.6E-20 1.2E-24 190.5 11.1 163 318-484 3-179 (307)
120 2fh5_B SR-beta, signal recogni 99.8 6.4E-20 2.2E-24 177.0 12.1 156 317-483 6-213 (214)
121 2yc2_C IFT27, small RAB-relate 99.8 1.5E-20 5.2E-25 179.5 7.3 161 317-485 19-191 (208)
122 2e87_A Hypothetical protein PH 99.8 1.9E-18 6.3E-23 181.4 23.7 162 316-485 165-335 (357)
123 2j0v_A RAC-like GTP-binding pr 99.8 3.5E-20 1.2E-24 178.5 9.7 157 317-486 8-180 (212)
124 2j1l_A RHO-related GTP-binding 99.8 8E-20 2.7E-24 177.1 11.8 157 317-486 33-209 (214)
125 3o47_A ADP-ribosylation factor 99.8 1.7E-19 5.7E-24 187.4 14.9 156 316-485 163-326 (329)
126 2gco_A H9, RHO-related GTP-bin 99.8 1.8E-19 6.1E-24 172.6 12.2 155 317-484 24-198 (201)
127 1m7b_A RND3/RHOE small GTP-bin 99.8 1.1E-19 3.8E-24 171.3 10.0 156 317-485 6-182 (184)
128 2wkq_A NPH1-1, RAS-related C3 99.8 4.5E-19 1.5E-23 182.1 14.9 158 314-485 151-329 (332)
129 3llu_A RAS-related GTP-binding 99.8 2.1E-19 7.3E-24 171.4 11.2 162 316-484 18-195 (196)
130 3lvq_E ARF-GAP with SH3 domain 99.8 4.4E-19 1.5E-23 193.8 14.9 157 316-486 320-484 (497)
131 2xtp_A GTPase IMAP family memb 99.8 1.4E-19 4.9E-24 180.7 9.8 167 317-486 21-208 (260)
132 1gwn_A RHO-related GTP-binding 99.8 2.3E-19 8E-24 173.2 9.8 155 317-485 27-203 (205)
133 3th5_A RAS-related C3 botulinu 99.6 1.4E-20 4.7E-25 180.5 0.0 155 317-484 29-203 (204)
134 1lnz_A SPO0B-associated GTP-bi 99.8 1.9E-19 6.3E-24 187.9 6.5 165 319-486 159-330 (342)
135 3lxw_A GTPase IMAP family memb 99.8 3E-18 1E-22 170.7 14.0 169 317-486 20-208 (247)
136 2zej_A Dardarin, leucine-rich 99.8 9E-19 3.1E-23 165.4 8.7 156 319-486 3-178 (184)
137 2cxx_A Probable GTP-binding pr 99.8 4.6E-18 1.6E-22 159.9 13.2 157 319-486 2-184 (190)
138 2aka_B Dynamin-1; fusion prote 99.7 5.9E-18 2E-22 171.9 12.9 162 317-484 25-251 (299)
139 3dpu_A RAB family protein; roc 99.7 4.4E-17 1.5E-21 179.8 17.6 155 316-487 39-209 (535)
140 3j2k_7 ERF3, eukaryotic polype 99.7 3.3E-17 1.1E-21 176.5 15.2 149 316-478 15-217 (439)
141 3t5d_A Septin-7; GTP-binding p 99.7 1.6E-17 5.5E-22 167.7 11.1 161 319-486 9-204 (274)
142 3izy_P Translation initiation 99.7 8.4E-19 2.9E-23 192.5 1.6 154 317-485 3-167 (537)
143 3tr5_A RF-3, peptide chain rel 99.7 1.9E-17 6.4E-22 182.1 11.6 116 319-448 14-150 (528)
144 2f9l_A RAB11B, member RAS onco 99.7 5.8E-17 2E-21 154.8 13.4 156 318-485 5-167 (199)
145 1wb1_A Translation elongation 99.7 2.2E-17 7.6E-22 179.9 11.6 154 318-485 19-188 (482)
146 4a9a_A Ribosome-interacting GT 99.7 7.8E-17 2.7E-21 169.6 14.7 153 288-444 35-194 (376)
147 3lxx_A GTPase IMAP family memb 99.7 7.5E-17 2.6E-21 159.1 13.1 166 317-486 28-214 (239)
148 1jwy_B Dynamin A GTPase domain 99.7 3.6E-16 1.2E-20 160.1 18.4 164 317-486 23-262 (315)
149 2p67_A LAO/AO transport system 99.7 3.6E-17 1.2E-21 170.6 10.9 216 316-557 54-328 (341)
150 3cb4_D GTP-binding protein LEP 99.7 1.5E-16 5.1E-21 177.1 14.6 154 319-486 5-182 (599)
151 2x2e_A Dynamin-1; nitration, h 99.7 2.2E-16 7.6E-21 165.3 15.0 159 317-482 30-254 (353)
152 1oix_A RAS-related protein RAB 99.7 1.9E-16 6.5E-21 150.7 13.1 155 318-484 29-190 (191)
153 3sjy_A Translation initiation 99.7 1.1E-16 3.7E-21 170.6 12.5 158 316-486 6-192 (403)
154 1zo1_I IF2, translation initia 99.7 1.1E-17 3.8E-22 182.2 3.9 152 317-483 3-164 (501)
155 2ywe_A GTP-binding protein LEP 99.7 1.8E-16 6E-21 176.2 12.9 154 319-486 7-184 (600)
156 3r7w_B Gtpase2, GTP-binding pr 99.7 9.1E-17 3.1E-21 165.6 8.9 156 320-484 1-172 (331)
157 3c5h_A Glucocorticoid receptor 99.7 1.7E-17 5.9E-22 165.8 3.2 167 316-484 17-253 (255)
158 2elf_A Protein translation elo 99.7 3.1E-16 1.1E-20 165.3 12.9 141 320-485 23-179 (370)
159 3p32_A Probable GTPase RV1496/ 99.7 5.3E-17 1.8E-21 170.2 7.0 175 317-516 78-310 (355)
160 3p26_A Elongation factor 1 alp 99.7 1.3E-16 4.4E-21 174.0 10.1 147 317-476 32-228 (483)
161 1zun_B Sulfate adenylate trans 99.7 3.5E-16 1.2E-20 168.3 12.5 147 317-477 23-215 (434)
162 1s0u_A EIF-2-gamma, translatio 99.7 9.6E-16 3.3E-20 163.6 15.8 157 317-486 7-198 (408)
163 2c78_A Elongation factor TU-A; 99.7 1.4E-16 5E-21 169.7 9.4 155 317-485 10-211 (405)
164 1d2e_A Elongation factor TU (E 99.6 3.4E-16 1.2E-20 166.5 11.8 155 318-486 3-195 (397)
165 1kk1_A EIF2gamma; initiation o 99.6 6.6E-16 2.3E-20 164.9 13.5 157 317-486 9-200 (410)
166 3izq_1 HBS1P, elongation facto 99.6 1.1E-16 3.9E-21 178.9 7.5 148 316-476 165-362 (611)
167 1h65_A Chloroplast outer envel 99.6 1.2E-15 4E-20 153.6 13.9 130 317-448 38-170 (270)
168 3def_A T7I23.11 protein; chlor 99.6 9.6E-16 3.3E-20 153.7 12.8 129 317-447 35-166 (262)
169 2ged_A SR-beta, signal recogni 99.6 1.2E-16 4.2E-21 151.0 5.7 145 293-449 24-173 (193)
170 1wxq_A GTP-binding protein; st 99.6 1.2E-16 4E-21 170.0 6.0 90 319-410 1-114 (397)
171 1nrj_B SR-beta, signal recogni 99.6 2.7E-16 9.3E-21 151.9 7.0 146 316-472 10-170 (218)
172 3mca_A HBS1, elongation factor 99.6 2.8E-17 9.5E-22 183.3 -0.1 154 317-484 176-395 (592)
173 1g7s_A Translation initiation 99.6 7.9E-16 2.7E-20 171.3 11.4 153 317-485 4-217 (594)
174 1pui_A ENGB, probable GTP-bind 99.6 2.3E-15 7.9E-20 144.3 12.9 163 315-486 23-199 (210)
175 2h5e_A Peptide chain release f 99.6 4.9E-15 1.7E-19 163.0 14.0 117 318-448 13-150 (529)
176 1jny_A EF-1-alpha, elongation 99.6 1.1E-15 3.8E-20 164.5 8.7 147 317-477 5-204 (435)
177 3zvr_A Dynamin-1; hydrolase, D 99.6 2.3E-14 7.9E-19 162.4 18.9 160 317-483 50-275 (772)
178 1udx_A The GTP-binding protein 99.6 2.9E-15 1E-19 159.9 10.8 168 316-487 155-326 (416)
179 1dar_A EF-G, elongation factor 99.6 8.6E-15 2.9E-19 166.0 15.2 116 318-447 12-144 (691)
180 1f60_A Elongation factor EEF1A 99.6 4.1E-16 1.4E-20 168.9 3.7 145 318-476 7-202 (458)
181 2xex_A Elongation factor G; GT 99.6 1E-14 3.4E-19 165.5 13.0 116 318-447 10-142 (693)
182 3avx_A Elongation factor TS, e 99.5 5.4E-15 1.8E-19 172.2 9.0 155 317-485 295-485 (1289)
183 1r5b_A Eukaryotic peptide chai 99.5 2.3E-15 7.8E-20 163.5 5.4 147 317-477 42-243 (467)
184 2rdo_7 EF-G, elongation factor 99.5 7.4E-14 2.5E-18 158.6 17.6 117 317-447 9-149 (704)
185 2dy1_A Elongation factor G; tr 99.5 3.1E-14 1.1E-18 160.8 13.8 116 316-445 7-139 (665)
186 1jal_A YCHF protein; nucleotid 99.5 3.3E-14 1.1E-18 148.8 12.6 90 318-409 2-108 (363)
187 2qm8_A GTPase/ATPase; G protei 99.5 3.5E-15 1.2E-19 155.3 5.0 178 315-518 52-289 (337)
188 3vqt_A RF-3, peptide chain rel 99.5 5.8E-14 2E-18 155.1 12.7 115 320-448 33-168 (548)
189 3t34_A Dynamin-related protein 99.5 1.8E-14 6.2E-19 151.0 8.2 158 318-480 34-255 (360)
190 2qag_A Septin-2, protein NEDD5 99.5 2.4E-14 8.1E-19 150.4 7.9 159 318-484 37-231 (361)
191 2wsm_A Hydrogenase expression/ 99.4 1.2E-13 4E-18 133.7 6.0 148 317-485 29-213 (221)
192 2dby_A GTP-binding protein; GD 99.4 1.8E-13 6.2E-18 143.8 7.8 89 319-409 2-111 (368)
193 3j25_A Tetracycline resistance 99.4 1.1E-13 3.9E-18 155.5 5.0 115 320-448 4-135 (638)
194 2qpt_A EH domain-containing pr 99.4 1.9E-12 6.7E-17 143.0 14.0 127 317-449 64-235 (550)
195 2qnr_A Septin-2, protein NEDD5 99.4 7E-13 2.4E-17 135.8 7.7 160 318-485 18-213 (301)
196 2qag_C Septin-7; cell cycle, c 99.3 1.1E-12 3.8E-17 140.0 6.6 160 319-485 32-226 (418)
197 4fn5_A EF-G 1, elongation fact 99.3 1.1E-11 3.6E-16 141.2 14.1 114 320-447 15-152 (709)
198 1n0u_A EF-2, elongation factor 99.3 2.5E-12 8.5E-17 148.8 8.2 113 319-445 20-163 (842)
199 1yrb_A ATP(GTP)binding protein 99.3 1.5E-12 5.2E-17 129.3 5.0 165 317-486 13-257 (262)
200 2hf9_A Probable hydrogenase ni 99.2 1.3E-11 4.6E-16 119.5 8.1 54 432-485 164-223 (226)
201 3ec1_A YQEH GTPase; atnos1, at 99.2 6.4E-13 2.2E-17 139.9 -2.5 123 318-450 162-292 (369)
202 1cip_A Protein (guanine nucleo 99.2 1.4E-11 4.8E-16 128.8 6.7 121 355-485 182-343 (353)
203 3ohm_A Guanine nucleotide-bind 99.1 3.7E-11 1.3E-15 124.1 6.8 124 354-487 155-319 (327)
204 2ohf_A Protein OLA1, GTP-bindi 99.1 3E-11 1E-15 127.7 5.5 95 314-410 18-129 (396)
205 4fid_A G protein alpha subunit 99.1 1.2E-10 4.1E-15 120.8 7.5 84 353-446 148-242 (340)
206 3h2y_A GTPase family protein; 99.1 2.3E-11 7.9E-16 128.0 1.4 124 318-450 160-291 (368)
207 2j37_W Signal recognition part 99.0 6.8E-10 2.3E-14 121.0 8.4 177 295-483 76-310 (504)
208 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 5.7E-10 2E-14 118.0 5.7 94 315-409 17-127 (392)
209 2qag_B Septin-6, protein NEDD5 98.9 9E-10 3.1E-14 117.4 7.1 128 316-450 38-194 (427)
210 1puj_A YLQF, conserved hypothe 98.9 1.8E-09 6E-14 109.5 7.3 62 315-379 117-178 (282)
211 1u0l_A Probable GTPase ENGC; p 98.9 7.3E-10 2.5E-14 113.3 3.9 132 333-482 32-169 (301)
212 1zcb_A G alpha I/13; GTP-bindi 98.8 2.7E-09 9.3E-14 111.8 5.1 149 327-485 156-352 (362)
213 1tq4_A IIGP1, interferon-induc 98.8 3.8E-08 1.3E-12 104.7 13.1 157 317-486 68-253 (413)
214 3dm5_A SRP54, signal recogniti 98.7 1.3E-08 4.3E-13 109.0 8.0 168 296-476 77-281 (443)
215 1azs_C GS-alpha; complex (lyas 98.7 1.1E-08 3.7E-13 108.4 5.9 121 355-485 206-384 (402)
216 3sop_A Neuronal-specific septi 98.7 4.2E-08 1.4E-12 98.7 9.4 124 319-449 3-157 (270)
217 1f5n_A Interferon-induced guan 98.6 1.8E-08 6.1E-13 111.7 5.5 100 317-421 37-144 (592)
218 2xtz_A Guanine nucleotide-bind 98.6 1.2E-08 4.1E-13 106.5 3.2 121 355-485 166-344 (354)
219 3cnl_A YLQF, putative uncharac 98.5 5.2E-08 1.8E-12 97.6 3.0 58 319-379 100-157 (262)
220 2v3c_C SRP54, signal recogniti 98.4 1.2E-07 4E-12 101.7 3.4 117 318-446 99-252 (432)
221 3e70_C DPA, signal recognition 98.4 3.1E-07 1.1E-11 94.9 6.3 148 316-476 127-310 (328)
222 3l82_B F-box only protein 4; T 98.3 1.7E-06 5.8E-11 83.2 8.8 95 391-485 119-222 (227)
223 3kl4_A SRP54, signal recogniti 98.3 5.5E-07 1.9E-11 96.2 5.9 167 296-475 73-279 (433)
224 2yv5_A YJEQ protein; hydrolase 98.2 1.1E-06 3.7E-11 89.7 6.0 85 393-482 75-165 (302)
225 1puj_A YLQF, conserved hypothe 98.0 5.4E-06 1.9E-10 83.7 6.9 86 391-484 17-104 (282)
226 3l2o_B F-box only protein 4; s 98.0 1.2E-05 4.1E-10 81.0 9.0 95 391-486 204-308 (312)
227 1j8m_F SRP54, signal recogniti 97.9 3.1E-05 1.1E-09 78.8 8.8 145 318-476 98-281 (297)
228 3q5d_A Atlastin-1; G protein, 97.8 3.5E-05 1.2E-09 82.6 8.0 99 319-421 68-192 (447)
229 3ec1_A YQEH GTPase; atnos1, at 97.7 4.8E-05 1.6E-09 79.7 6.7 85 393-485 67-161 (369)
230 3h2y_A GTPase family protein; 97.6 6E-05 2.1E-09 78.9 7.1 84 393-484 65-158 (368)
231 3szr_A Interferon-induced GTP- 97.5 0.00026 9E-09 78.9 11.0 24 319-342 46-69 (608)
232 3cnl_A YLQF, putative uncharac 97.5 2.8E-05 9.5E-10 77.6 2.0 81 392-483 16-98 (262)
233 1rj9_A FTSY, signal recognitio 97.5 0.0002 7E-09 72.9 8.4 121 317-445 101-260 (304)
234 2yhs_A FTSY, cell division pro 97.3 0.0011 3.9E-08 71.6 11.8 43 298-340 271-315 (503)
235 2xxa_A Signal recognition part 97.1 0.0007 2.4E-08 72.3 7.9 118 318-447 100-255 (433)
236 1t9h_A YLOQ, probable GTPase E 97.1 0.00012 4E-09 74.8 1.5 58 318-379 173-237 (307)
237 1zu4_A FTSY; GTPase, signal re 97.0 0.011 3.7E-07 60.5 15.3 25 316-340 103-127 (320)
238 1t9h_A YLOQ, probable GTPase E 96.9 0.00021 7.1E-09 72.9 1.0 83 393-479 82-170 (307)
239 1vma_A Cell division protein F 96.9 0.0042 1.4E-07 63.2 10.4 24 317-340 103-126 (306)
240 2px0_A Flagellar biosynthesis 96.7 0.0035 1.2E-07 63.4 8.7 24 317-340 104-127 (296)
241 2rcn_A Probable GTPase ENGC; Y 96.7 0.0005 1.7E-08 71.5 2.3 26 318-343 215-240 (358)
242 2yv5_A YJEQ protein; hydrolase 96.6 0.0021 7.1E-08 65.2 6.2 56 319-378 166-228 (302)
243 3ney_A 55 kDa erythrocyte memb 96.6 0.00041 1.4E-08 66.2 0.8 57 317-375 18-75 (197)
244 2rcn_A Probable GTPase ENGC; Y 96.4 0.0042 1.5E-07 64.5 7.2 82 394-480 127-213 (358)
245 1u0l_A Probable GTPase ENGC; p 96.4 0.0015 5.3E-08 66.1 3.5 26 319-344 170-195 (301)
246 2ffh_A Protein (FFH); SRP54, s 96.2 0.0034 1.2E-07 66.7 5.2 147 317-476 97-279 (425)
247 2v1u_A Cell division control p 96.0 0.073 2.5E-06 54.4 13.9 25 317-341 43-67 (387)
248 1kgd_A CASK, peripheral plasma 96.0 0.0024 8.2E-08 59.3 2.4 25 318-342 5-29 (180)
249 1ls1_A Signal recognition part 95.7 0.0061 2.1E-07 61.6 3.8 24 317-340 97-120 (295)
250 1ye8_A Protein THEP1, hypothet 95.6 0.005 1.7E-07 57.4 2.8 24 319-342 1-24 (178)
251 3c8u_A Fructokinase; YP_612366 95.6 0.0079 2.7E-07 57.0 4.0 28 315-342 19-46 (208)
252 1bif_A 6-phosphofructo-2-kinas 95.5 0.0013 4.3E-08 71.0 -2.0 99 316-421 37-143 (469)
253 2qz4_A Paraplegin; AAA+, SPG7, 95.5 0.071 2.4E-06 51.6 10.7 25 317-341 38-62 (262)
254 1lvg_A Guanylate kinase, GMP k 95.4 0.0056 1.9E-07 57.8 2.4 24 318-341 4-27 (198)
255 1ex7_A Guanylate kinase; subst 95.3 0.0067 2.3E-07 57.1 2.6 50 321-372 4-54 (186)
256 3tau_A Guanylate kinase, GMP k 95.2 0.01 3.6E-07 56.3 3.5 26 317-342 7-32 (208)
257 4ido_A Atlastin-1; GTPase, GTP 95.2 0.024 8.4E-07 60.5 6.7 21 319-339 68-88 (457)
258 1zp6_A Hypothetical protein AT 95.2 0.0094 3.2E-07 55.1 3.0 26 316-341 7-32 (191)
259 3h4m_A Proteasome-activating n 95.1 0.08 2.7E-06 52.1 9.7 26 316-341 49-74 (285)
260 3tr0_A Guanylate kinase, GMP k 95.1 0.011 3.6E-07 55.4 3.1 26 317-342 6-31 (205)
261 1znw_A Guanylate kinase, GMP k 94.9 0.012 4.2E-07 55.6 3.1 28 315-342 17-44 (207)
262 1z6g_A Guanylate kinase; struc 94.8 0.012 4E-07 56.5 2.7 27 316-342 21-47 (218)
263 3a00_A Guanylate kinase, GMP k 94.8 0.011 3.8E-07 54.9 2.5 22 321-342 4-25 (186)
264 3asz_A Uridine kinase; cytidin 94.8 0.013 4.5E-07 55.2 2.9 25 317-341 5-29 (211)
265 2j41_A Guanylate kinase; GMP, 94.7 0.015 5.2E-07 54.3 3.1 27 316-342 4-30 (207)
266 2qor_A Guanylate kinase; phosp 94.7 0.013 4.3E-07 55.3 2.5 27 316-342 10-36 (204)
267 1s96_A Guanylate kinase, GMP k 94.6 0.016 5.5E-07 55.8 3.1 28 315-342 13-40 (219)
268 3ec2_A DNA replication protein 94.6 0.027 9.1E-07 51.8 4.5 25 317-341 37-61 (180)
269 1kag_A SKI, shikimate kinase I 94.5 0.016 5.6E-07 52.6 2.6 24 318-341 4-27 (173)
270 4gp7_A Metallophosphoesterase; 94.3 0.021 7.3E-07 52.4 3.0 25 316-340 7-31 (171)
271 3tif_A Uncharacterized ABC tra 94.3 0.022 7.5E-07 55.4 3.2 27 316-342 29-55 (235)
272 4eun_A Thermoresistant glucoki 94.3 0.022 7.4E-07 53.5 3.1 25 317-341 28-52 (200)
273 1htw_A HI0065; nucleotide-bind 94.2 0.054 1.9E-06 49.4 5.6 27 316-342 31-57 (158)
274 2pcj_A ABC transporter, lipopr 94.2 0.023 7.8E-07 54.9 3.0 27 316-342 28-54 (224)
275 3n70_A Transport activator; si 94.1 0.18 6.3E-06 44.6 8.8 26 317-342 23-48 (145)
276 3lnc_A Guanylate kinase, GMP k 94.1 0.021 7.2E-07 54.8 2.6 27 316-342 25-52 (231)
277 2cbz_A Multidrug resistance-as 94.1 0.026 8.8E-07 55.0 3.2 27 316-342 29-55 (237)
278 2bbw_A Adenylate kinase 4, AK4 94.0 0.027 9.1E-07 54.7 3.3 23 317-339 26-48 (246)
279 1ixz_A ATP-dependent metallopr 94.0 0.045 1.5E-06 53.2 4.9 22 321-342 52-73 (254)
280 2onk_A Molybdate/tungstate ABC 94.0 0.023 7.8E-07 55.6 2.8 23 320-342 26-48 (240)
281 3te6_A Regulatory protein SIR3 94.0 0.38 1.3E-05 48.9 11.8 26 316-341 43-68 (318)
282 2v9p_A Replication protein E1; 93.9 0.026 8.8E-07 57.3 3.0 27 315-341 123-149 (305)
283 1mv5_A LMRA, multidrug resista 93.9 0.027 9.3E-07 55.0 3.1 27 316-342 26-52 (243)
284 2pze_A Cystic fibrosis transme 93.9 0.028 9.6E-07 54.4 3.2 27 316-342 32-58 (229)
285 2ff7_A Alpha-hemolysin translo 93.9 0.028 9.7E-07 55.1 3.2 27 316-342 33-59 (247)
286 3b85_A Phosphate starvation-in 93.9 0.026 8.8E-07 54.0 2.8 24 318-341 22-45 (208)
287 1cke_A CK, MSSA, protein (cyti 93.9 0.028 9.5E-07 53.4 3.1 24 318-341 5-28 (227)
288 1g6h_A High-affinity branched- 93.9 0.029 9.8E-07 55.3 3.2 27 316-342 31-57 (257)
289 2bdt_A BH3686; alpha-beta prot 93.9 0.024 8.4E-07 52.4 2.6 21 320-340 4-24 (189)
290 3end_A Light-independent proto 93.8 0.19 6.3E-06 50.3 9.2 68 365-444 156-225 (307)
291 1knq_A Gluconate kinase; ALFA/ 93.8 0.03 1E-06 51.1 3.0 25 317-341 7-31 (175)
292 3gfo_A Cobalt import ATP-bindi 93.8 0.029 1E-06 56.0 3.2 27 316-342 32-58 (275)
293 2jeo_A Uridine-cytidine kinase 93.8 0.029 9.9E-07 54.6 3.0 26 316-341 23-48 (245)
294 1b0u_A Histidine permease; ABC 93.8 0.03 1E-06 55.4 3.2 27 316-342 30-56 (262)
295 1sgw_A Putative ABC transporte 93.8 0.027 9.4E-07 54.1 2.7 26 317-342 34-59 (214)
296 4g1u_C Hemin import ATP-bindin 93.7 0.031 1E-06 55.5 3.2 27 316-342 35-61 (266)
297 2ghi_A Transport protein; mult 93.7 0.031 1.1E-06 55.2 3.2 27 316-342 44-70 (260)
298 1ji0_A ABC transporter; ATP bi 93.7 0.033 1.1E-06 54.4 3.2 27 316-342 30-56 (240)
299 2eyu_A Twitching motility prot 93.7 0.032 1.1E-06 55.2 3.2 26 316-341 23-48 (261)
300 3uie_A Adenylyl-sulfate kinase 93.7 0.032 1.1E-06 52.3 3.0 26 316-341 23-48 (200)
301 3aez_A Pantothenate kinase; tr 93.7 0.03 1E-06 56.9 3.0 27 315-341 87-113 (312)
302 2qi9_C Vitamin B12 import ATP- 93.6 0.034 1.1E-06 54.7 3.2 27 316-342 24-50 (249)
303 2olj_A Amino acid ABC transpor 93.6 0.034 1.2E-06 55.1 3.2 27 316-342 48-74 (263)
304 2ixe_A Antigen peptide transpo 93.6 0.035 1.2E-06 55.2 3.2 27 316-342 43-69 (271)
305 2ihy_A ABC transporter, ATP-bi 93.6 0.035 1.2E-06 55.6 3.2 27 316-342 45-71 (279)
306 1iy2_A ATP-dependent metallopr 93.5 0.059 2E-06 53.2 4.9 23 320-342 75-97 (278)
307 1vpl_A ABC transporter, ATP-bi 93.5 0.036 1.2E-06 54.7 3.2 27 316-342 39-65 (256)
308 2d2e_A SUFC protein; ABC-ATPas 93.5 0.036 1.2E-06 54.4 3.2 26 316-341 27-52 (250)
309 2qt1_A Nicotinamide riboside k 93.5 0.037 1.3E-06 52.0 3.1 27 315-341 18-44 (207)
310 2zu0_C Probable ATP-dependent 93.5 0.036 1.2E-06 55.0 3.2 26 316-341 44-69 (267)
311 3tqc_A Pantothenate kinase; bi 93.5 0.086 3E-06 53.8 6.0 26 316-341 90-115 (321)
312 1rz3_A Hypothetical protein rb 93.5 0.063 2.2E-06 50.4 4.7 26 316-341 20-45 (201)
313 1odf_A YGR205W, hypothetical 3 93.4 0.084 2.9E-06 53.0 5.8 26 316-341 29-54 (290)
314 2i3b_A HCR-ntpase, human cance 93.4 0.033 1.1E-06 52.4 2.5 23 320-342 3-25 (189)
315 2nq2_C Hypothetical ABC transp 93.3 0.039 1.3E-06 54.3 3.1 27 316-342 29-55 (253)
316 3lw7_A Adenylate kinase relate 93.3 0.039 1.3E-06 49.4 2.9 20 319-338 2-21 (179)
317 2yz2_A Putative ABC transporte 93.3 0.04 1.4E-06 54.6 3.2 27 316-342 31-57 (266)
318 2if2_A Dephospho-COA kinase; a 93.3 0.037 1.3E-06 51.8 2.7 22 319-340 2-23 (204)
319 3kb2_A SPBC2 prophage-derived 93.3 0.038 1.3E-06 49.8 2.7 22 320-341 3-24 (173)
320 4b4t_L 26S protease subunit RP 93.2 0.37 1.2E-05 51.3 10.6 52 291-342 186-239 (437)
321 1ly1_A Polynucleotide kinase; 93.2 0.046 1.6E-06 49.6 3.2 22 319-340 3-24 (181)
322 1kht_A Adenylate kinase; phosp 93.2 0.046 1.6E-06 50.1 3.1 24 318-341 3-26 (192)
323 3cm0_A Adenylate kinase; ATP-b 93.2 0.039 1.3E-06 50.7 2.6 24 317-340 3-26 (186)
324 2x8a_A Nuclear valosin-contain 93.1 0.047 1.6E-06 54.3 3.3 22 321-342 47-68 (274)
325 2chg_A Replication factor C sm 93.1 0.27 9.1E-06 45.4 8.5 22 320-341 40-61 (226)
326 2pjz_A Hypothetical protein ST 93.1 0.043 1.5E-06 54.4 3.0 25 318-342 30-54 (263)
327 3nh6_A ATP-binding cassette SU 93.1 0.031 1E-06 56.8 1.9 27 316-342 78-104 (306)
328 1np6_A Molybdopterin-guanine d 93.1 0.039 1.3E-06 51.2 2.5 23 319-341 7-29 (174)
329 3t61_A Gluconokinase; PSI-biol 93.1 0.04 1.4E-06 51.5 2.6 24 318-341 18-41 (202)
330 3vaa_A Shikimate kinase, SK; s 93.1 0.047 1.6E-06 51.1 3.1 25 317-341 24-48 (199)
331 2v54_A DTMP kinase, thymidylat 93.0 0.05 1.7E-06 50.6 3.2 25 317-341 3-27 (204)
332 2p5t_B PEZT; postsegregational 93.0 0.07 2.4E-06 52.1 4.3 27 315-341 29-55 (253)
333 2gza_A Type IV secretion syste 93.0 0.04 1.4E-06 57.1 2.7 26 317-342 174-199 (361)
334 2f1r_A Molybdopterin-guanine d 93.0 0.023 7.9E-07 52.6 0.7 23 320-342 4-26 (171)
335 4a74_A DNA repair and recombin 92.9 0.045 1.5E-06 51.8 2.8 27 315-341 22-48 (231)
336 2rhm_A Putative kinase; P-loop 92.9 0.051 1.7E-06 50.0 3.1 24 317-340 4-27 (193)
337 3fb4_A Adenylate kinase; psych 92.9 0.049 1.7E-06 51.4 3.0 23 319-341 1-23 (216)
338 1jjv_A Dephospho-COA kinase; P 92.9 0.05 1.7E-06 51.0 3.0 22 319-340 3-24 (206)
339 1gvn_B Zeta; postsegregational 92.8 0.13 4.6E-06 51.3 6.2 26 316-341 31-56 (287)
340 2jaq_A Deoxyguanosine kinase; 92.8 0.05 1.7E-06 50.5 2.8 22 320-341 2-23 (205)
341 3dl0_A Adenylate kinase; phosp 92.8 0.053 1.8E-06 51.2 3.0 23 319-341 1-23 (216)
342 4e22_A Cytidylate kinase; P-lo 92.7 0.057 2E-06 52.8 3.3 24 316-339 25-48 (252)
343 1qhx_A CPT, protein (chloramph 92.7 0.06 2.1E-06 48.9 3.3 24 318-341 3-26 (178)
344 1sq5_A Pantothenate kinase; P- 92.7 0.05 1.7E-06 55.0 2.9 26 316-341 78-103 (308)
345 2kjq_A DNAA-related protein; s 92.7 0.057 2E-06 48.5 3.0 26 317-342 35-60 (149)
346 1aky_A Adenylate kinase; ATP:A 92.7 0.06 2E-06 51.1 3.3 25 317-341 3-27 (220)
347 2bbs_A Cystic fibrosis transme 92.7 0.055 1.9E-06 54.5 3.1 27 316-342 62-88 (290)
348 1xwi_A SKD1 protein; VPS4B, AA 92.7 0.59 2E-05 47.3 10.9 23 319-341 46-68 (322)
349 2plr_A DTMP kinase, probable t 92.6 0.06 2.1E-06 50.2 3.2 24 318-341 4-27 (213)
350 2ehv_A Hypothetical protein PH 92.6 0.059 2E-06 51.7 3.1 24 316-339 28-51 (251)
351 2pt7_A CAG-ALFA; ATPase, prote 92.6 0.045 1.5E-06 56.1 2.4 24 319-342 172-195 (330)
352 4b4t_I 26S protease regulatory 92.6 0.52 1.8E-05 49.9 10.5 26 317-342 215-240 (437)
353 1lw7_A Transcriptional regulat 92.6 0.042 1.4E-06 56.8 2.2 25 318-342 170-194 (365)
354 3jvv_A Twitching mobility prot 92.5 0.048 1.6E-06 56.5 2.5 22 320-341 125-146 (356)
355 1y63_A LMAJ004144AAA protein; 92.5 0.066 2.3E-06 49.5 3.3 25 317-341 9-33 (184)
356 2oap_1 GSPE-2, type II secreti 92.5 0.053 1.8E-06 59.0 2.9 26 317-342 259-284 (511)
357 1jbk_A CLPB protein; beta barr 92.5 0.11 3.9E-06 46.8 4.7 24 318-341 43-66 (195)
358 2yvu_A Probable adenylyl-sulfa 92.5 0.058 2E-06 49.7 2.8 26 316-341 11-36 (186)
359 2wwf_A Thymidilate kinase, put 92.4 0.068 2.3E-06 50.0 3.2 26 316-341 8-33 (212)
360 1nn5_A Similar to deoxythymidy 92.4 0.068 2.3E-06 50.1 3.2 26 316-341 7-32 (215)
361 3tlx_A Adenylate kinase 2; str 92.4 0.084 2.9E-06 51.3 3.9 26 316-341 27-52 (243)
362 1uf9_A TT1252 protein; P-loop, 92.3 0.067 2.3E-06 49.6 3.0 26 316-341 6-31 (203)
363 2cdn_A Adenylate kinase; phosp 92.3 0.075 2.6E-06 49.6 3.3 26 316-341 18-43 (201)
364 2vp4_A Deoxynucleoside kinase; 92.3 0.065 2.2E-06 51.5 2.9 26 316-341 18-43 (230)
365 1tev_A UMP-CMP kinase; ploop, 92.2 0.071 2.4E-06 48.9 3.1 24 318-341 3-26 (196)
366 4b4t_K 26S protease regulatory 92.2 0.98 3.4E-05 47.8 12.2 24 319-342 207-230 (428)
367 2pez_A Bifunctional 3'-phospho 92.2 0.071 2.4E-06 48.8 3.0 25 317-341 4-28 (179)
368 2c95_A Adenylate kinase 1; tra 92.2 0.075 2.6E-06 49.0 3.2 26 316-341 7-32 (196)
369 1nks_A Adenylate kinase; therm 92.2 0.068 2.3E-06 49.0 2.8 22 320-341 3-24 (194)
370 1zd8_A GTP:AMP phosphotransfer 92.0 0.075 2.6E-06 50.7 3.1 25 317-341 6-30 (227)
371 4b4t_J 26S protease regulatory 92.0 0.57 1.9E-05 49.2 9.9 25 318-342 182-206 (405)
372 1lv7_A FTSH; alpha/beta domain 92.0 0.14 4.8E-06 49.7 5.0 24 318-341 45-68 (257)
373 3fvq_A Fe(3+) IONS import ATP- 92.0 0.074 2.5E-06 55.2 3.1 27 317-343 29-55 (359)
374 3trf_A Shikimate kinase, SK; a 92.0 0.084 2.9E-06 48.4 3.2 24 318-341 5-28 (185)
375 1z47_A CYSA, putative ABC-tran 91.9 0.079 2.7E-06 54.9 3.2 27 316-342 39-65 (355)
376 3qf7_A RAD50; ABC-ATPase, ATPa 91.9 0.24 8.3E-06 51.2 6.9 22 317-339 23-44 (365)
377 3tui_C Methionine import ATP-b 91.9 0.079 2.7E-06 55.1 3.2 27 316-342 52-78 (366)
378 2ewv_A Twitching motility prot 91.8 0.075 2.6E-06 55.3 3.0 25 317-341 135-159 (372)
379 2yyz_A Sugar ABC transporter, 91.8 0.081 2.8E-06 54.9 3.2 26 317-342 28-53 (359)
380 3b9q_A Chloroplast SRP recepto 91.8 0.15 5.1E-06 51.5 5.1 26 316-341 98-123 (302)
381 1e4v_A Adenylate kinase; trans 91.7 0.082 2.8E-06 50.0 2.9 22 319-340 1-22 (214)
382 1m7g_A Adenylylsulfate kinase; 91.7 0.12 3.9E-06 48.9 3.9 27 315-341 22-48 (211)
383 2it1_A 362AA long hypothetical 91.7 0.086 2.9E-06 54.8 3.2 26 317-342 28-53 (362)
384 1zak_A Adenylate kinase; ATP:A 91.6 0.081 2.8E-06 50.3 2.7 25 317-341 4-28 (222)
385 3rlf_A Maltose/maltodextrin im 91.6 0.088 3E-06 55.0 3.2 27 317-343 28-54 (381)
386 4b4t_H 26S protease regulatory 91.5 0.56 1.9E-05 50.1 9.4 27 316-342 241-267 (467)
387 1v43_A Sugar-binding transport 91.5 0.09 3.1E-06 54.8 3.2 27 316-342 35-61 (372)
388 1p9r_A General secretion pathw 91.5 0.073 2.5E-06 56.4 2.5 22 320-341 169-190 (418)
389 2bwj_A Adenylate kinase 5; pho 91.5 0.083 2.8E-06 48.8 2.6 25 317-341 11-35 (199)
390 1g29_1 MALK, maltose transport 91.5 0.092 3.2E-06 54.7 3.2 27 317-343 28-54 (372)
391 1sxj_A Activator 1 95 kDa subu 91.5 0.6 2.1E-05 50.5 9.8 23 319-341 78-100 (516)
392 2pt5_A Shikimate kinase, SK; a 91.5 0.097 3.3E-06 47.0 3.0 23 319-341 1-23 (168)
393 3iij_A Coilin-interacting nucl 91.4 0.093 3.2E-06 48.0 2.9 25 317-341 10-34 (180)
394 3be4_A Adenylate kinase; malar 91.3 0.1 3.5E-06 49.5 3.2 24 318-341 5-28 (217)
395 1vht_A Dephospho-COA kinase; s 91.3 0.1 3.4E-06 49.4 3.0 24 317-340 3-26 (218)
396 3vfd_A Spastin; ATPase, microt 91.3 0.6 2.1E-05 48.4 9.2 24 318-341 148-171 (389)
397 2w0m_A SSO2452; RECA, SSPF, un 91.2 0.1 3.5E-06 49.1 3.0 26 316-341 21-46 (235)
398 2vli_A Antibiotic resistance p 91.1 0.096 3.3E-06 47.7 2.6 24 318-341 5-28 (183)
399 3gd7_A Fusion complex of cysti 91.1 0.1 3.6E-06 54.7 3.1 27 316-342 45-71 (390)
400 3syl_A Protein CBBX; photosynt 91.0 0.24 8.3E-06 49.1 5.7 25 317-341 66-90 (309)
401 1via_A Shikimate kinase; struc 91.0 0.091 3.1E-06 47.9 2.3 22 320-341 6-27 (175)
402 2npi_A Protein CLP1; CLP1-PCF1 91.0 0.091 3.1E-06 56.4 2.6 27 316-342 136-162 (460)
403 2og2_A Putative signal recogni 90.9 0.14 4.7E-06 53.2 3.8 26 316-341 155-180 (359)
404 3sr0_A Adenylate kinase; phosp 90.9 0.12 4E-06 49.3 3.0 23 319-341 1-23 (206)
405 1ukz_A Uridylate kinase; trans 90.9 0.12 4.3E-06 48.0 3.2 25 317-341 14-38 (203)
406 3kta_A Chromosome segregation 90.9 0.099 3.4E-06 47.8 2.4 21 320-340 28-48 (182)
407 3d31_A Sulfate/molybdate ABC t 90.9 0.078 2.7E-06 54.7 1.9 26 317-342 25-50 (348)
408 2p65_A Hypothetical protein PF 90.8 0.16 5.5E-06 45.8 3.8 24 318-341 43-66 (187)
409 2pbr_A DTMP kinase, thymidylat 90.8 0.12 4.2E-06 47.3 3.0 21 320-340 2-22 (195)
410 2z0h_A DTMP kinase, thymidylat 90.7 0.12 4.2E-06 47.5 3.0 22 320-341 2-23 (197)
411 1gtv_A TMK, thymidylate kinase 90.6 0.051 1.7E-06 51.0 0.2 22 320-341 2-23 (214)
412 3bos_A Putative DNA replicatio 90.6 0.22 7.5E-06 47.0 4.7 24 318-341 52-75 (242)
413 1in4_A RUVB, holliday junction 90.6 0.1 3.6E-06 53.1 2.6 23 320-342 53-75 (334)
414 1nij_A Hypothetical protein YJ 90.5 0.1 3.4E-06 53.0 2.4 23 320-342 6-28 (318)
415 4eaq_A DTMP kinase, thymidylat 90.5 0.13 4.4E-06 49.7 3.0 26 316-341 24-49 (229)
416 1qf9_A UMP/CMP kinase, protein 90.5 0.14 4.7E-06 46.8 3.1 24 318-341 6-29 (194)
417 2xb4_A Adenylate kinase; ATP-b 90.4 0.13 4.5E-06 49.1 3.0 23 319-341 1-23 (223)
418 1xjc_A MOBB protein homolog; s 90.4 0.14 4.7E-06 47.3 3.0 23 319-341 5-27 (169)
419 1oxx_K GLCV, glucose, ABC tran 90.4 0.075 2.6E-06 55.0 1.2 26 317-342 30-55 (353)
420 1fnn_A CDC6P, cell division co 90.3 0.25 8.7E-06 50.4 5.3 22 320-341 46-67 (389)
421 2iyv_A Shikimate kinase, SK; t 90.3 0.12 4.2E-06 47.2 2.6 23 319-341 3-25 (184)
422 3a4m_A L-seryl-tRNA(SEC) kinas 90.3 0.14 4.9E-06 50.2 3.2 24 318-341 4-27 (260)
423 2cvh_A DNA repair and recombin 90.3 0.14 4.9E-06 47.9 3.1 25 316-340 18-42 (220)
424 1ak2_A Adenylate kinase isoenz 90.2 0.15 5.3E-06 48.8 3.3 26 316-341 14-39 (233)
425 1cr0_A DNA primase/helicase; R 90.2 0.14 4.7E-06 51.0 3.0 26 316-341 33-58 (296)
426 2obl_A ESCN; ATPase, hydrolase 90.2 0.13 4.4E-06 53.1 2.9 27 316-342 69-95 (347)
427 2qby_A CDC6 homolog 1, cell di 90.1 0.21 7.3E-06 50.7 4.4 24 318-341 45-68 (386)
428 4f4c_A Multidrug resistance pr 90.0 1.1 3.9E-05 54.1 11.3 25 318-342 444-468 (1321)
429 3nwj_A ATSK2; P loop, shikimat 90.0 0.13 4.5E-06 50.5 2.6 24 318-341 48-71 (250)
430 2ze6_A Isopentenyl transferase 90.0 0.13 4.4E-06 50.4 2.5 22 320-341 3-24 (253)
431 3r20_A Cytidylate kinase; stru 90.0 0.16 5.5E-06 49.4 3.1 26 316-341 7-32 (233)
432 2yl4_A ATP-binding cassette SU 90.0 0.14 4.8E-06 56.6 3.1 25 318-342 370-394 (595)
433 3b60_A Lipid A export ATP-bind 90.0 0.14 4.8E-06 56.4 3.1 24 319-342 370-393 (582)
434 3b9p_A CG5977-PA, isoform A; A 89.9 0.31 1.1E-05 48.2 5.3 25 318-342 54-78 (297)
435 1n0w_A DNA repair protein RAD5 89.8 0.16 5.4E-06 48.4 2.9 27 315-341 21-47 (243)
436 3qf4_B Uncharacterized ABC tra 89.7 0.16 5.4E-06 56.3 3.3 25 318-342 381-405 (598)
437 1yqt_A RNAse L inhibitor; ATP- 89.7 0.16 5.6E-06 55.5 3.3 27 316-342 45-71 (538)
438 1e6c_A Shikimate kinase; phosp 89.6 0.16 5.5E-06 45.7 2.7 22 320-341 4-25 (173)
439 3b5x_A Lipid A export ATP-bind 89.6 0.16 5.4E-06 56.0 3.1 26 317-342 368-393 (582)
440 2qmh_A HPR kinase/phosphorylas 89.6 0.24 8.3E-06 47.1 3.9 28 316-343 32-59 (205)
441 1d2n_A N-ethylmaleimide-sensit 89.5 2.7 9.4E-05 40.7 11.8 24 318-341 64-87 (272)
442 1q3t_A Cytidylate kinase; nucl 89.3 0.19 6.5E-06 48.3 3.1 25 316-340 14-38 (236)
443 2zan_A Vacuolar protein sortin 89.3 1.6 5.5E-05 46.2 10.7 24 318-341 167-190 (444)
444 4a82_A Cystic fibrosis transme 89.2 0.14 4.7E-06 56.4 2.3 26 317-342 366-391 (578)
445 2dpy_A FLII, flagellum-specifi 89.2 0.18 6.1E-06 53.7 3.0 27 316-342 155-181 (438)
446 3cf0_A Transitional endoplasmi 89.2 0.47 1.6E-05 47.4 6.0 27 316-342 47-73 (301)
447 1zcb_A G alpha I/13; GTP-bindi 89.1 0.19 6.5E-06 52.1 3.2 23 316-338 31-53 (362)
448 3euj_A Chromosome partition pr 89.1 0.16 5.3E-06 54.8 2.5 23 319-341 30-52 (483)
449 1uj2_A Uridine-cytidine kinase 89.1 0.21 7E-06 48.6 3.2 25 317-341 21-45 (252)
450 1svm_A Large T antigen; AAA+ f 89.1 0.19 6.5E-06 52.4 3.1 27 315-341 166-192 (377)
451 3qf4_A ABC transporter, ATP-bi 88.9 0.17 5.8E-06 55.9 2.7 25 318-342 369-393 (587)
452 1f2t_A RAD50 ABC-ATPase; DNA d 88.8 0.19 6.3E-06 45.1 2.5 19 321-339 26-44 (149)
453 2w58_A DNAI, primosome compone 88.7 0.47 1.6E-05 43.9 5.3 23 319-341 55-77 (202)
454 3co5_A Putative two-component 88.6 0.35 1.2E-05 42.7 4.1 24 318-341 27-50 (143)
455 3t15_A Ribulose bisphosphate c 88.6 0.34 1.2E-05 48.3 4.5 26 316-341 34-59 (293)
456 4dzz_A Plasmid partitioning pr 88.5 1 3.6E-05 41.4 7.6 69 365-445 75-143 (206)
457 3d8b_A Fidgetin-like protein 1 88.5 0.91 3.1E-05 46.5 7.8 25 317-341 116-140 (357)
458 3ozx_A RNAse L inhibitor; ATP 88.5 0.22 7.5E-06 54.4 3.2 26 317-342 24-49 (538)
459 3j16_B RLI1P; ribosome recycli 88.4 0.22 7.6E-06 55.2 3.3 26 317-342 102-127 (608)
460 2f6r_A COA synthase, bifunctio 88.4 0.23 7.8E-06 49.4 3.0 24 317-340 74-97 (281)
461 1zuh_A Shikimate kinase; alpha 88.3 0.25 8.4E-06 44.5 2.9 22 320-341 9-30 (168)
462 3bk7_A ABC transporter ATP-bin 88.3 0.23 7.9E-06 55.1 3.3 27 316-342 115-141 (607)
463 1ojl_A Transcriptional regulat 88.1 1.3 4.4E-05 44.4 8.5 25 317-341 24-48 (304)
464 2qby_B CDC6 homolog 3, cell di 88.0 0.48 1.6E-05 48.4 5.3 23 319-341 46-68 (384)
465 3m6a_A ATP-dependent protease 87.7 0.39 1.3E-05 52.4 4.6 25 317-341 107-131 (543)
466 1njg_A DNA polymerase III subu 87.7 0.24 8.1E-06 46.3 2.5 22 320-341 47-68 (250)
467 4f4c_A Multidrug resistance pr 87.6 0.22 7.6E-06 60.2 2.8 24 318-341 1105-1128(1321)
468 1wsr_A Aminomethyltransferase; 87.5 1.1 3.8E-05 46.4 7.7 52 109-171 56-107 (375)
469 1yqt_A RNAse L inhibitor; ATP- 87.5 0.27 9.3E-06 53.7 3.2 26 317-342 311-336 (538)
470 3ozx_A RNAse L inhibitor; ATP 87.4 0.27 9.3E-06 53.7 3.2 26 317-342 293-318 (538)
471 1p5z_B DCK, deoxycytidine kina 87.3 0.23 8E-06 48.5 2.4 26 316-341 22-47 (263)
472 3u61_B DNA polymerase accessor 87.3 4.2 0.00014 40.4 11.7 21 321-341 51-71 (324)
473 3cr8_A Sulfate adenylyltranfer 87.1 0.2 7E-06 54.8 1.9 28 315-342 366-393 (552)
474 1ltq_A Polynucleotide kinase; 87.1 0.31 1.1E-05 48.3 3.2 22 319-340 3-24 (301)
475 1nlf_A Regulatory protein REPA 87.1 0.29 1E-05 48.2 2.9 25 316-340 28-52 (279)
476 2grj_A Dephospho-COA kinase; T 87.0 0.31 1.1E-05 45.7 2.9 24 318-341 12-35 (192)
477 2dhr_A FTSH; AAA+ protein, hex 86.9 0.66 2.3E-05 50.1 5.8 23 320-342 66-88 (499)
478 3umf_A Adenylate kinase; rossm 86.9 0.36 1.2E-05 46.3 3.3 25 317-341 28-52 (217)
479 3ake_A Cytidylate kinase; CMP 86.8 0.31 1.1E-05 45.1 2.8 22 320-341 4-25 (208)
480 4b4t_M 26S protease regulatory 86.8 0.44 1.5E-05 50.6 4.2 26 317-342 214-239 (434)
481 3gir_A Aminomethyltransferase; 86.7 1.2 4.2E-05 46.5 7.6 54 107-171 82-135 (393)
482 1vly_A SPOT PR51, unknown prot 86.7 0.92 3.2E-05 46.3 6.5 75 107-202 37-111 (338)
483 3bk7_A ABC transporter ATP-bin 86.6 0.32 1.1E-05 53.9 3.2 26 317-342 381-406 (607)
484 1wos_A Aminomethyltransferase; 86.5 1.3 4.5E-05 45.6 7.6 53 108-171 50-102 (364)
485 2ga8_A Hypothetical 39.9 kDa p 86.2 0.72 2.5E-05 47.6 5.3 23 319-341 25-47 (359)
486 2ce7_A Cell division protein F 86.2 0.5 1.7E-05 50.8 4.3 23 319-341 50-72 (476)
487 1ko7_A HPR kinase/phosphatase; 86.2 0.43 1.5E-05 48.4 3.6 32 317-348 143-174 (314)
488 1a7j_A Phosphoribulokinase; tr 86.1 0.3 1E-05 48.9 2.4 23 318-340 5-27 (290)
489 1yx2_A Aminomethyltransferase; 86.0 1.2 4.1E-05 45.9 7.0 53 108-171 54-106 (365)
490 3j16_B RLI1P; ribosome recycli 86.0 0.32 1.1E-05 53.9 2.8 24 320-343 380-403 (608)
491 1tue_A Replication protein E1; 85.9 0.27 9.3E-06 47.0 1.8 22 320-341 60-81 (212)
492 1v5v_A Aminomethyltransferase; 85.8 1.5 5E-05 45.9 7.6 53 108-171 54-106 (401)
493 1qhl_A Protein (cell division 85.8 0.069 2.4E-06 51.8 -2.5 22 321-342 30-51 (227)
494 4aby_A DNA repair protein RECN 85.7 0.14 4.8E-06 53.4 -0.3 24 315-339 58-81 (415)
495 2ocp_A DGK, deoxyguanosine kin 85.6 0.42 1.4E-05 45.9 3.1 24 318-341 2-25 (241)
496 1vlo_A Aminomethyltransferase; 85.6 1.3 4.4E-05 46.1 7.0 53 108-171 63-116 (381)
497 3ttg_A Putative aminomethyltra 85.6 0.99 3.4E-05 46.5 6.1 54 107-171 43-96 (355)
498 1l8q_A Chromosomal replication 85.5 0.34 1.2E-05 48.7 2.5 23 319-341 38-60 (324)
499 3uk6_A RUVB-like 2; hexameric 85.5 0.76 2.6E-05 46.7 5.1 23 319-341 71-93 (368)
500 4fcw_A Chaperone protein CLPB; 85.4 0.71 2.4E-05 45.7 4.7 22 320-341 49-70 (311)
No 1
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=100.00 E-value=9.8e-104 Score=858.43 Aligned_cols=465 Identities=33% Similarity=0.509 Sum_probs=377.6
Q ss_pred ccCCCCCCcEEEEecCCCCCCcEEEEEEeecccHHHHHHHhcCCCcccccCCCCCCCCCCCcceeeeeeeecCCCCeeee
Q 008468 86 EEKAGTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDE 165 (564)
Q Consensus 86 ~~~~~~~dtI~AlaT~~g~g~~aiaiiRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~ 165 (564)
..+.+.+|||||||||+| +|||||||||||+|++|++++|++.++.+. ...|++|+++||+++|. +++|||
T Consensus 9 ~~~~~~~dtI~Aiat~~g--~~~i~iiRiSG~~a~~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~iD~ 79 (476)
T 3gee_A 9 LHLPVPGHPIAAIATPVG--VGALAIVRISGAGVLDLADRVFRKVHGSGK------LAEAAGYTAHFGRLYDG-EEMVDE 79 (476)
T ss_dssp ---CCCCCCEEEECSCSS--CCSEEEEEEESTTHHHHHHHHEEESSSCCC------GGGCCTTEEEEEEEESS-SCEEEE
T ss_pred ccCCCCCCCEEEeCCCCc--CcEEEEEEeechhHHHHHHHHhCccccccc------ccCCCCCEEEEEEEecC-Ccccce
Confidence 345567899999999975 899999999999999999999975310000 01357899999999985 789999
Q ss_pred EEEEEcCCCCCcchhhhHHHhhhccHHHHHHHHHHHHHcCCcccCCchhHHHHHHcCCcchhHhHHHHHHHhhhhHHHHH
Q 008468 166 VLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAAD 245 (564)
Q Consensus 166 ~l~~~f~~P~S~TgEd~vEi~~HG~~~v~~~il~~l~~~g~R~A~pGEFt~Raf~ngkldL~qaEai~~lI~A~t~~~~~ 245 (564)
||++||++|+||||||+||||||||++|++++|++|++.|+|+|+|||||||||+||||||+|||||+|||+|+|+.+++
T Consensus 80 ~l~~~f~~P~s~TgEd~~E~~~HGg~~v~~~~l~~~~~~g~r~A~pGEFt~RAflngk~dL~qaEav~dli~a~t~~~~~ 159 (476)
T 3gee_A 80 VIALVFRAPRSFTAEQMVEFTCHGGPVVVGRVLRLMLDNGCRLAEPGEFTRRAFLNGRIDLLQAEAIGEMIHARTESAYR 159 (476)
T ss_dssp EEEEEEBTTBSSSSSCEEEEEEECCHHHHHHHHHHHHHTTCEECCTTHHHHHHHHTTSSCHHHHHHHHHHHHCCSHHHHH
T ss_pred EEEEEecCCCCCCCCCeEEEECCCCHHHHHHHHHHHHHCCCeecCCcchhhhhhccCcCcHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHHHHHhhcCCCC-CCcccHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcEEEEE
Q 008468 246 AALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDE-MPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIV 324 (564)
Q Consensus 246 ~A~~~~~G~ls~~i~~lr~~l~~~~a~~Ea~idf~ed-~~~~~~~~l~~~l~~l~~~l~~ll~~~~~~~~~~~~ikI~Iv 324 (564)
.|+++++|.+++.+..||++|+++++.+|+.+||+|| .+..+.+.+.+++..+.++++.++....+++..+++++|+|+
T Consensus 160 ~a~~~l~G~ls~~i~~lr~~L~~~~a~iea~iDf~eedi~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~r~~~kV~iv 239 (476)
T 3gee_A 160 TAVSQMKGDLSVRLGGLREQLIRSCALIELELDFSEEDVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIVSEGVSTVIA 239 (476)
T ss_dssp HHHHHHHTHHHHHHHHHHTHHHHHHHTTTTCSSCCSSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE
T ss_pred HHHHhhCCcHHHHHHHHHHHHHHHHHHhheecCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCEEEEE
Confidence 9999999999999999999999999999999999874 566788999999999999999999988888888999999999
Q ss_pred cCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEE
Q 008468 325 GRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMT 404 (564)
Q Consensus 325 G~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~V 404 (564)
|+||||||||+|+|++.+.++++++++||++.....+.++|.++.+|||||++++.+.++.+++.++..++..+|++++|
T Consensus 240 G~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~V 319 (476)
T 3gee_A 240 GKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYL 319 (476)
T ss_dssp CCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCSSCSEEEEE
T ss_pred CCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEE
Confidence 99999999999999999888899999999999999999999999999999999988889999999999999999999999
Q ss_pred ecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhccc-CCcEEEEeccCCCCHHHHHHHHHHH
Q 008468 405 VSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNS-FNDHVFTCAVTGQGIQDLETAIMKI 483 (564)
Q Consensus 405 iD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~~-~~~~i~iSAktg~GI~eL~~~L~~~ 483 (564)
+|++++.++.+.+.+..+.... .++|+++|+||+|+.+......+.+.+. +.+++++||++|.|+++++++|.+.
T Consensus 320 vD~s~~~s~~~~~~~~~~l~~l----~~~piIvV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~ 395 (476)
T 3gee_A 320 LDLGTERLDDELTEIRELKAAH----PAAKFLTVANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDTLKQHMGDL 395 (476)
T ss_dssp EETTTCSSGGGHHHHHHHHHHC----TTSEEEEEEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHH
T ss_pred EECCCCcchhhhHHHHHHHHhc----CCCCEEEEEECcCCCCccchhHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHH
Confidence 9999988875443333333332 1689999999999987655433333332 4689999999999999999999998
Q ss_pred hh-ccCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHhcccCCCCchHHHHhhhhcCCC
Q 008468 484 VG-LHQIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCI 562 (564)
Q Consensus 484 l~-~~~~~~~~~~~~~~~r~~~~l~~~~~~L~~~~~~l~~~l~~el~~~eLr~a~~~L~eitG~~~~e~iL~~IF~~FCi 562 (564)
+. ..... .+..+..+.||++.++++.++|.++...+..+++.++++++|+.|+..||+|||+..+||+||+||++|||
T Consensus 396 ~~~~~~~~-~~~~~~~~~R~~~~l~~a~~~L~~~~~~l~~~~~~dl~a~~lr~a~~~Lg~itG~~~~edlL~~iF~~FCi 474 (476)
T 3gee_A 396 VKNLDKLH-EASVLVTSLRHYEALRNASDALQNALELIAHESETELIAFELRAALDYVGQITGKVVNEEVLNTIFDKFCI 474 (476)
T ss_dssp HHSSCCCC-TTSCCCCSHHHHHHHHHHHHHHHHHHTTTTTTCCSSSHHHHHHHHHHHHHHHHTSSCCSSHHHHHHTTSCT
T ss_pred HhhccCCC-CcccccccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCC
Confidence 86 43322 33457889999999999999999999888888899999999999999999999999999999999999999
Q ss_pred CC
Q 008468 563 GK 564 (564)
Q Consensus 563 GK 564 (564)
||
T Consensus 475 GK 476 (476)
T 3gee_A 475 GK 476 (476)
T ss_dssp TC
T ss_pred CC
Confidence 99
No 2
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=100.00 E-value=2.4e-103 Score=852.45 Aligned_cols=455 Identities=50% Similarity=0.814 Sum_probs=392.1
Q ss_pred CCCcEEEEecCCCCCCcEEEEEEeecccHHHHHHHhcCCCcccccCCCCCCCCCCCcceeeeeeeec-CCCCeeeeEEEE
Q 008468 91 TFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLD-RHGNVVDEVLAV 169 (564)
Q Consensus 91 ~~dtI~AlaT~~g~g~~aiaiiRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iD~~l~~ 169 (564)
.+|||||||||.++|+|||||||||||+|++|++++|+++.. ..+++|+++||+++| .+|++|||||++
T Consensus 6 ~~dtI~A~at~~~~g~~~i~iiRiSG~~a~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~iD~~l~~ 75 (462)
T 3geh_A 6 ITGTIAAIATAIVPQQGSVGIVRVSGSQAIAIAQTLFDAPGK----------QVWESHRILYGYIRHPQTRQIVDEALLL 75 (462)
T ss_dssp CCSCEEEECSCCBTTBCSCEEEEEESTTHHHHHHHHEECCSC----------CCCCTTEEEEEEECCSSSCCCCEEEEEE
T ss_pred CCCCEEEECCCCCCCCceEEEEEeEchhHHHHHHHHhCCCCc----------cCCCCcEEEEEecccCCCCCCcceEEEE
Confidence 469999999992224899999999999999999999975311 124689999999999 468999999999
Q ss_pred EcCCCCCcchhhhHHHhhhccHHHHHHHHHHHHHcCCcccCCchhHHHHHHcCCcchhHhHHHHHHHhhhhHHHHHHHHH
Q 008468 170 PMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALA 249 (564)
Q Consensus 170 ~f~~P~S~TgEd~vEi~~HG~~~v~~~il~~l~~~g~R~A~pGEFt~Raf~ngkldL~qaEai~~lI~A~t~~~~~~A~~ 249 (564)
||++||||||||+||||||||++|+++||++|++.|+|+|+|||||||||+||||||+||||++|||+|+|+.+++.|++
T Consensus 76 ~f~~p~s~TgEd~~E~~~HGg~~v~~~~l~~~~~~g~r~A~pGEFt~RAflngk~dL~qaEav~dli~a~t~~~~~~a~~ 155 (462)
T 3geh_A 76 LMKAPRSYTREDVVEFHCHGGIIAVQQVLQLCLESGARLAQPGEFTLRAFLNGRLDLTQAESIADLVGARSPQAAQTALA 155 (462)
T ss_dssp EECTTCSSSSSCEEEEEECCSSSHHHHHHHHHHHTTCEECCTTHHHHHHHHTTSCCHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred EEcCCCCCcCCceEEEECCCCHHHHHHHHHHHHHCCCeecCCchhhhhHHhcCCcCHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcEEEEEcCCCC
Q 008468 250 GIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329 (564)
Q Consensus 250 ~~~G~ls~~i~~lr~~l~~~~a~~Ea~idf~ed~~~~~~~~l~~~l~~l~~~l~~ll~~~~~~~~~~~~ikI~IvG~~nv 329 (564)
+++|.+++.+..||++++++++.+|+.+||+|+.++.+.+.+.+++..+.++++.++.....++..+++++|+|+|++||
T Consensus 156 ~l~g~~~~~~~~~r~~l~~~~a~iEa~iDf~ed~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~r~~~kV~ivG~~nv 235 (462)
T 3geh_A 156 GLQGKLAHPIRQLRANCLDILAEIEARIDFEEDLPPLDDEAIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNV 235 (462)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHTTSSSSSCCCCTTTHHHHHHHHHHHHHHHTTTHHHHHHHHHCEEEEEEECTTS
T ss_pred HhchhHHHHHHHHHHHHHHHHHHHHhhccccccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCEEEEEcCCCC
Confidence 99999999999999999999999999999999877778888999999999999999888888888899999999999999
Q ss_pred ChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCC
Q 008468 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVD 409 (564)
Q Consensus 330 GKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~ 409 (564)
|||||+|+|++.++++++++++||++.....+.++|.++.+|||||++++.+.++.+++.++..++..+|++++|+|+++
T Consensus 236 GKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~ 315 (462)
T 3geh_A 236 GKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAAT 315 (462)
T ss_dssp SHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCCSCSEEEEEEETTT
T ss_pred CHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCC
Confidence 99999999999988889999999999988889999999999999999998888999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhcccCCcEEEEeccCCCCHHHHHHHHHHHhhccC
Q 008468 410 GWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQ 488 (564)
Q Consensus 410 ~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~~~~~~i~iSAktg~GI~eL~~~L~~~l~~~~ 488 (564)
+.+..+.+++..+. ..|+++|+||+|+.+...... +.+. ...+++++||++|.|+++|++.|.+.+....
T Consensus 316 ~~~~~~~~i~~~l~--------~~piivV~NK~Dl~~~~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 316 GWTTGDQEIYEQVK--------HRPLILVMNKIDLVEKQLITSLEYPE-NITQIVHTAAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp CSCHHHHHHHHHHT--------TSCEEEEEECTTSSCGGGSTTCCCCT-TCCCEEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred CCCHHHHHHHHhcc--------CCcEEEEEECCCCCcchhhHHHHHhc-cCCcEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 88877766555442 369999999999976543321 1111 2357999999999999999999999886544
Q ss_pred CCCCCccccccHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHhcccCCCCchHHHHhhhhcCCCCC
Q 008468 489 IPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564 (564)
Q Consensus 489 ~~~~~~~~~~~~r~~~~l~~~~~~L~~~~~~l~~~l~~el~~~eLr~a~~~L~eitG~~~~e~iL~~IF~~FCiGK 564 (564)
....+..+..+.||.+.++++.++|+++.+.+..+++.++++++||.|+..|++|||+..+|||||+||++|||||
T Consensus 387 ~~~~~~~~~~~~R~~~~L~~a~~~L~~~~~~l~~~~~~dl~a~~Lr~a~~~l~~itg~~~~e~~l~~iFs~FCiGK 462 (462)
T 3geh_A 387 VQAADMDLAINQRQAAALTQAKMSLEQVQATITQQLPLDFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 462 (462)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHHHHHHHHTTTTCCGGGTHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTSCTTC
T ss_pred CCCcccceechHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHhhCCCchHHHHHHHHhhCCCCC
Confidence 3233456788999999999999999999999888899999999999999999999999999999999999999999
No 3
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=100.00 E-value=6.6e-94 Score=781.81 Aligned_cols=450 Identities=37% Similarity=0.602 Sum_probs=402.0
Q ss_pred CCCCcEEEEecCCCCCCcEEEEEEeecccHHHHHHHhcCCCcccccCCCCCCCCCCCcceeeeeeeecCCCCeeeeEEEE
Q 008468 90 GTFSTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAV 169 (564)
Q Consensus 90 ~~~dtI~AlaT~~g~g~~aiaiiRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~ 169 (564)
...|||||||||+| +|||||||||||+|++|++++|.++ . .|++|+++||+++| +|+.|||++++
T Consensus 31 ~~~dtI~A~at~~g--~~~i~iiRiSG~~a~~~~~~~~~~~--~----------~~~~~~~~~~~~~~-~~~~iDe~~v~ 95 (482)
T 1xzp_A 31 KLMDTIVAVATPPG--KGAIAILRLSGPDSWKIVQKHLRTR--S----------KIVPRKAIHGWIHE-NGEDVDEVVVV 95 (482)
T ss_dssp CSSCCEEEECSCSS--SCSCEEEEEESSSHHHHHHTTEEES--S----------CCCBTBCEEEEECC-SSCCCCEEEEE
T ss_pred ccCCCEEEEccCCC--CceEEEEEcccHHHHHHHHHHhcCC--C----------CCCCceEEEEEEec-CCeeeeEEEEE
Confidence 34599999999975 8999999999999999999999421 0 24689999999999 78999999999
Q ss_pred EcCCCCCcchhhhHHHhhhccHHHHHHHHHHHHHcCCcccCCchhHHHHHHcCCcchhHhHHHHHHHhhhhHHHHHHHHH
Q 008468 170 PMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISAKSVAAADAALA 249 (564)
Q Consensus 170 ~f~~P~S~TgEd~vEi~~HG~~~v~~~il~~l~~~g~R~A~pGEFt~Raf~ngkldL~qaEai~~lI~A~t~~~~~~A~~ 249 (564)
||++|+||||||+||||||||++|++++|+.|++.|+|+|+|||||+|||+|||+||+|+|+++|||+|+|+.+++.|+.
T Consensus 96 ~~~~p~Sft~Ed~ve~~~hGg~~v~~~~l~~l~~~g~r~A~~Geft~raf~nGk~Dl~qaE~i~dli~a~t~~~~~~a~~ 175 (482)
T 1xzp_A 96 FYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKSGARMAEPGEFTKRAFLNGKMDLTSAEAVRDLIEAKSETSLKLSLR 175 (482)
T ss_dssp EECTTSSSSSSCEEEEEECSCHHHHHHHHHHHHTTTCEECCTTHHHHHHHHTTSSCHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred EEeCCCcCCCCCEeeecCcCcHHHHHHHHHHHHHcCCEeCCCCCcCCcCCCcCCcCHHHHHHHHHHHhhccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcEEEEEcCCCC
Q 008468 250 GIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNV 329 (564)
Q Consensus 250 ~~~G~ls~~i~~lr~~l~~~~a~~Ea~idf~ed~~~~~~~~l~~~l~~l~~~l~~ll~~~~~~~~~~~~ikI~IvG~~nv 329 (564)
+++|++++.+..||++++++++.+|+.+||+|+.+..+.+ +..++..+..+++.+++..+.++..+++++|+|+|+|||
T Consensus 176 ~l~g~l~~~~~~~r~~l~~~~~~ie~~idf~eei~~~~~~-i~~~~~~l~~eL~~l~~~~~~~~~~r~~~kV~ivG~pnv 254 (482)
T 1xzp_A 176 NLKGGLRDFVDSLRRELIEVLAEIRVELDYPDEIETNTGE-VVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNV 254 (482)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHH
T ss_pred hcchhHhHHHHHHHHHHHHHHHHhhhcCCCCccccchHHH-HHHHHHHHHHHHHHHHHhhhhhhhccCCCEEEEECcCCC
Confidence 9999999999999999999999999999999873335566 889999999999999988888888889999999999999
Q ss_pred ChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCC-CchhHHHHhhhhhhhhhhhcCcEEEEEecCC
Q 008468 330 GKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIR-ETDDIVEKIGVERSEAVALGADVIIMTVSAV 408 (564)
Q Consensus 330 GKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~-~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s 408 (564)
|||||+|+|++.++++++++++||+|.....+.+++.++.||||||++ ++.+.++.+++.++..++..+|++|+|+|++
T Consensus 255 GKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s 334 (482)
T 1xzp_A 255 GKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDAS 334 (482)
T ss_dssp HTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETT
T ss_pred cHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCC
Confidence 999999999999888899999999999999999999999999999999 8888888888888888899999999999999
Q ss_pred CCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhcccCCcEEEEeccCCCCHHHHHHHHHHHhhcc
Q 008468 409 DGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGLH 487 (564)
Q Consensus 409 ~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~~~~~~i~iSAktg~GI~eL~~~L~~~l~~~ 487 (564)
++.+.++.+++..+ .++|+++|+||+|+.+...... .++.....+++++||++|.|+++|+++|.+.+...
T Consensus 335 ~~~s~~~~~il~~l--------~~~piivV~NK~DL~~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~l~~~~~~~ 406 (482)
T 1xzp_A 335 SPLDEEDRKILERI--------KNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRETQEI 406 (482)
T ss_dssp SCCCHHHHHHHHHH--------TTSSEEEEEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCHHHHHHHHHHHTHHH
T ss_pred CCCCHHHHHHHHHh--------cCCCEEEEEECcccccccCHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 98888776665443 2579999999999975422111 22223335799999999999999999999976421
Q ss_pred CCCCCCccccccHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHhcccCCCCchHHHHhhhhcCCCCC
Q 008468 488 QIPAGGRRWAVNQRQCEQLMRTKEALVRLKSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 564 (564)
Q Consensus 488 ~~~~~~~~~~~~~r~~~~l~~~~~~L~~~~~~l~~~l~~el~~~eLr~a~~~L~eitG~~~~e~iL~~IF~~FCiGK 564 (564)
. ...+..+..+.||.+.++++.++|.++.+.+..+++.++.+++||.|+..|++|||+...||+|+.||++|||||
T Consensus 407 ~-~~~~~~~~~~~R~~~~l~~a~~~L~~~~~~l~~~~~~~l~a~~lr~a~~~L~~itG~~~~edlL~~IFs~FCiGK 482 (482)
T 1xzp_A 407 F-ERGSDSLITNLRQKQLLENVKGHLEDAIKSLKEGMPVDMASIDLERALNLLDEVTGRSFREDLLDTIFSNFCVGK 482 (482)
T ss_dssp H-HHHTTCSCCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHTTSCTTC
T ss_pred c-CCCCcceEhhHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHhcCCCCC
Confidence 1 111235678999999999999999999999989999999999999999999999999999999999999999999
No 4
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.92 E-value=1.5e-24 Score=203.53 Aligned_cols=163 Identities=35% Similarity=0.521 Sum_probs=129.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
.+++|+|+|++|||||||+|+|++.....+++++++|++.....+.+++.++.+|||||+.+.....+..++.+...+++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 46899999999999999999999988767888999999998889999999999999999987655555555556666789
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcccCCcEEEEeccCCCCHHHH
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDL 476 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL 476 (564)
.+|++++|+|++++.++.+..++..+... ...+.|+++|+||+|+....... ......+++++||++|.|++++
T Consensus 83 ~ad~~i~v~D~~~~~s~~~~~~~~~~~~~---~~~~~p~ilv~NK~Dl~~~~~~~---~~~~~~~~~~~SA~~g~gv~~l 156 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVDPAEIWPEFIAR---LPAKLPITVVRNKADITGETLGM---SEVNGHALIRLSARTGEGVDVL 156 (172)
T ss_dssp TCSEEEEEEETTTCCCCSHHHHCHHHHHH---SCTTCCEEEEEECHHHHCCCCEE---EEETTEEEEECCTTTCTTHHHH
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHh---cccCCCEEEEEECccCCcchhhh---hhccCCceEEEeCCCCCCHHHH
Confidence 99999999999998877665555554432 12468999999999985432111 1112357899999999999999
Q ss_pred HHHHHHHhh
Q 008468 477 ETAIMKIVG 485 (564)
Q Consensus 477 ~~~L~~~l~ 485 (564)
++.|.+.+.
T Consensus 157 ~~~l~~~~~ 165 (172)
T 2gj8_A 157 RNHLKQSMG 165 (172)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhh
Confidence 999998764
No 5
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.91 E-value=1.1e-23 Score=221.64 Aligned_cols=249 Identities=16% Similarity=0.154 Sum_probs=153.8
Q ss_pred HHHHHH--hhhhHH-HHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHhhcCC---CCCCcccHHHHHHHHHHHHHHHHH
Q 008468 231 NVEKLI--SAKSVA-AADAALAGIQGGFSSLVTSVRAKCIELLTEIEARLDFD---DEMPPLNLNLVMDKIHAMSQDVEN 304 (564)
Q Consensus 231 ai~~lI--~A~t~~-~~~~A~~~~~G~ls~~i~~lr~~l~~~~a~~Ea~idf~---ed~~~~~~~~l~~~l~~l~~~l~~ 304 (564)
-|.++. +|+|.+ .++.++.++.+.+.+. ..|. .++..+..++|. |...+.+.+.+..++..+..++..
T Consensus 89 lil~i~~~ra~t~~~~~q~~la~l~~~~~rl-~~~~-----~l~~~~~~i~~~g~ge~~~e~~~~~~~~~i~~l~~~l~~ 162 (364)
T 2qtf_A 89 LLLEIFALHAGSKEAKMQIELARLKYELPII-KETY-----TKSKIGEQQGPLGAGTYGVESTIKFYKRRINKLMKELES 162 (364)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH-HHC--------------------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCcccchhHHHHHHHHhhhchhh-hhhh-----HHHHhcCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 356777 5588999999888776 5562 344566777885 322245677888899999999888
Q ss_pred HHHHh--hhhhhhcCCcE-EEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCC--c
Q 008468 305 ALETA--NYDKLLQSGLQ-IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRE--T 379 (564)
Q Consensus 305 ll~~~--~~~~~~~~~ik-I~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~--~ 379 (564)
+.... .+....+.+++ |+|+|++|||||||+|+|++... .+++++++|+|.....+.++|.++.+|||||+.. +
T Consensus 163 ~~~~r~~~r~~r~~~~~~~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp 241 (364)
T 2qtf_A 163 IKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIP 241 (364)
T ss_dssp HHC-------------CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSCC
T ss_pred HHHHHHHHHHhhhhcCCcEEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCC
Confidence 76543 23344566777 99999999999999999999875 6788999999999999999999999999999743 4
Q ss_pred hhHHHHhhhhhhhhhhhcCcEEEEEecCCCCC--ChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hh--
Q 008468 380 DDIVEKIGVERSEAVALGADVIIMTVSAVDGW--TSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NK-- 454 (564)
Q Consensus 380 ~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~--s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~-- 454 (564)
.+.++.+ ..+...+..+|++++|+|++++. .......+..++.... ..+.|+|+|+||+|+.+...... ..
T Consensus 242 ~~lve~f--~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~ 317 (364)
T 2qtf_A 242 PQIVDAF--FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIG--VSGKPILVTLNKIDKINGDLYKKLDLVE 317 (364)
T ss_dssp GGGHHHH--HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT--CCSCCEEEEEECGGGCCSCHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC--cCCCCEEEEEECCCCCCchHHHHHHHHH
Confidence 5555554 23445688999999999998864 3333333444333221 24689999999999976542110 11
Q ss_pred -hccc----CCcEEEEeccCCCCHHHHHHHHHHHhhccCCC
Q 008468 455 -VGNS----FNDHVFTCAVTGQGIQDLETAIMKIVGLHQIP 490 (564)
Q Consensus 455 -l~~~----~~~~i~iSAktg~GI~eL~~~L~~~l~~~~~~ 490 (564)
+... ..+++++||++|.|+++|++.|.+.+.....+
T Consensus 318 ~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~~~ 358 (364)
T 2qtf_A 318 KLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLSLE 358 (364)
T ss_dssp HHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC--
T ss_pred HHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccCCC
Confidence 1111 12579999999999999999999988655433
No 6
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.89 E-value=4.1e-23 Score=212.05 Aligned_cols=163 Identities=21% Similarity=0.270 Sum_probs=131.7
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGA 398 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~a 398 (564)
.+|+|+|+||||||||+|+|++.+++++++.++||++.....+..++.++.||||||+.++...++......+..+++.+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~a 87 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADV 87 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcC
Confidence 46999999999999999999999988888999999988887778889999999999998766655555556667789999
Q ss_pred cEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCc-chh--hhhcccCCcEEEEeccCCCCHHH
Q 008468 399 DVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS-NEW--NKVGNSFNDHVFTCAVTGQGIQD 475 (564)
Q Consensus 399 D~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~-~~~--~~l~~~~~~~i~iSAktg~GI~e 475 (564)
|++++|+|++++.+..+..++..+... ..+.|+++|+||+|+..... ... +.+ ..+.+++++||++|.|+++
T Consensus 88 d~il~VvD~~~~~~~~~~~i~~~l~~~----~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~iSA~~g~gv~~ 162 (301)
T 1wf3_A 88 NAVVWVVDLRHPPTPEDELVARALKPL----VGKVPILLVGNKLDAAKYPEEAMKAYHEL-LPEAEPRMLSALDERQVAE 162 (301)
T ss_dssp SEEEEEEETTSCCCHHHHHHHHHHGGG----TTTSCEEEEEECGGGCSSHHHHHHHHHHT-STTSEEEECCTTCHHHHHH
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHhh----cCCCCEEEEEECcccCCchHHHHHHHHHh-cCcCcEEEEeCCCCCCHHH
Confidence 999999999998777765555555432 13689999999999976543 211 233 2345789999999999999
Q ss_pred HHHHHHHHhhc
Q 008468 476 LETAIMKIVGL 486 (564)
Q Consensus 476 L~~~L~~~l~~ 486 (564)
+++.|.+.+..
T Consensus 163 l~~~l~~~l~~ 173 (301)
T 1wf3_A 163 LKADLLALMPE 173 (301)
T ss_dssp HHHHHHTTCCB
T ss_pred HHHHHHHhccc
Confidence 99999987643
No 7
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.89 E-value=1.6e-22 Score=208.21 Aligned_cols=164 Identities=32% Similarity=0.470 Sum_probs=132.2
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEEC-CeeeEEEeCCCCCCch--hHHHHhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC-GVPVTLLDTAGIRETD--DIVEKIGVERSEAVA 395 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~-g~~i~LiDTpG~~~~~--~~ie~~~i~~~~~~l 395 (564)
-.|+|+|.||||||||+|+|++.+.++++..++||++.....+..+ +.++.||||||+.++. ..........+..++
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l 90 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL 90 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHh
Confidence 5799999999999999999999998888999999999998888888 9999999999998655 334444445566778
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCC-CCCcchh--hhhcc---cCCcEEEEeccC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA-PSASNEW--NKVGN---SFNDHVFTCAVT 469 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~-~~~~~~~--~~l~~---~~~~~i~iSAkt 469 (564)
..+|++++|+|++++.+..+...|...... .+.|+++|+||+|+. +...... +.+.+ .+.+++++||++
T Consensus 91 ~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~ 165 (308)
T 3iev_A 91 EEADVILFMIDATEGWRPRDEEIYQNFIKP-----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALK 165 (308)
T ss_dssp HHCSEEEEEEETTTBSCHHHHHHHHHHTGG-----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTT
T ss_pred hcCCEEEEEEeCCCCCCchhHHHHHHHHHh-----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 999999999999998888887763333222 368999999999997 3332221 33332 346799999999
Q ss_pred CCCHHHHHHHHHHHhhcc
Q 008468 470 GQGIQDLETAIMKIVGLH 487 (564)
Q Consensus 470 g~GI~eL~~~L~~~l~~~ 487 (564)
|.|++++++.|.+.+...
T Consensus 166 g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 166 GANLDELVKTILKYLPEG 183 (308)
T ss_dssp TBSHHHHHHHHHHHSCBC
T ss_pred CCCHHHHHHHHHHhCccC
Confidence 999999999999988643
No 8
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.88 E-value=2.4e-22 Score=183.95 Aligned_cols=158 Identities=30% Similarity=0.411 Sum_probs=112.3
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGA 398 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~a 398 (564)
+||+++|++|||||||+|+|.+.....+...+++|.+.....+.+++..+.+|||||......... ........++..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-~~~~~~~~~~~~~ 80 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEK-KIQEKVDRALEDA 80 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCH-HHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHH-HHHHHHHHHHHhC
Confidence 589999999999999999999988766788899999988888899999999999999976422111 1112234568899
Q ss_pred cEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhccc-CCcEEEEeccCCCCHHHHH
Q 008468 399 DVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNS-FNDHVFTCAVTGQGIQDLE 477 (564)
Q Consensus 399 D~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~~-~~~~i~iSAktg~GI~eL~ 477 (564)
|++++|+|++++.+..+......+.. .+.|+++|+||+|+.+.... ..++... ..+++++||++|.|+++++
T Consensus 81 ~~~i~v~d~~~~~~~~~~~~~~~~~~------~~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 153 (161)
T 2dyk_A 81 EVVLFAVDGRAELTQADYEVAEYLRR------KGKPVILVATKVDDPKHELY-LGPLYGLGFGDPIPTSSEHARGLEELL 153 (161)
T ss_dssp SEEEEEEESSSCCCHHHHHHHHHHHH------HTCCEEEEEECCCSGGGGGG-CGGGGGGSSCSCEECBTTTTBSHHHHH
T ss_pred CEEEEEEECCCcccHhHHHHHHHHHh------cCCCEEEEEECcccccchHh-HHHHHhCCCCCeEEEecccCCChHHHH
Confidence 99999999999877665544444433 26899999999999765221 1333332 2378999999999999999
Q ss_pred HHHHHHh
Q 008468 478 TAIMKIV 484 (564)
Q Consensus 478 ~~L~~~l 484 (564)
++|.+.+
T Consensus 154 ~~l~~~l 160 (161)
T 2dyk_A 154 EAIWERL 160 (161)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9998764
No 9
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.88 E-value=3.3e-23 Score=217.06 Aligned_cols=218 Identities=16% Similarity=0.170 Sum_probs=145.7
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC------CcceeccccC-------------------------------------e
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS------ERAIVTEIAG-------------------------------------T 352 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~------~~~~vs~~~g-------------------------------------t 352 (564)
+.+..|+|+|+||||||||+|+|++. +..++..-|. +
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 45789999999999999999999962 2122221111 2
Q ss_pred eEEEEEEE--EEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCC
Q 008468 353 TRDVIEAS--VTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTE 430 (564)
Q Consensus 353 T~d~~~~~--~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~ 430 (564)
|++..... +..++..+.|+||||+..... .....+|++++|+|++.+...+... ..+
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~~~-----------~l~~~~d~vl~V~d~~~~~~~~~i~--~~i-------- 210 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQSEF-----------AVADMVDMFVLLLPPAGGDELQGIK--RGI-------- 210 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--CHH-----------HHHTTCSEEEEEECCC----------------------
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchhhh-----------hHHhhCCEEEEEEcCCcchhHHHhH--HHH--------
Confidence 21111000 123677899999999864422 1256899999999998753221111 111
Q ss_pred CCCCEEEEEecCCCCCCCcch--hhhh----c-------ccCCcEEEEeccCCCCHHHHHHHHHHHhhccCCCCCCcccc
Q 008468 431 SSTPMILVINKIDCAPSASNE--WNKV----G-------NSFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWA 497 (564)
Q Consensus 431 ~~~PvIvV~NK~DL~~~~~~~--~~~l----~-------~~~~~~i~iSAktg~GI~eL~~~L~~~l~~~~~~~~~~~~~ 497 (564)
.+.|.++|+||+|+.+..... ...+ . ...++++++||++|.|+++|+++|.+.+... ......
T Consensus 211 l~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~~----~~~~~~ 286 (349)
T 2www_A 211 IEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDLM----LASGEL 286 (349)
T ss_dssp CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHHH----HHHSHH
T ss_pred HhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHHH----hhCchH
Confidence 145889999999986432111 1111 1 1135689999999999999999999876431 112456
Q ss_pred ccHHHHHHHHHHHHHHHHHHHH-HhhcCChhhHHHHHHHHHHHHhcccCCCCchHHHHhhhhc
Q 008468 498 VNQRQCEQLMRTKEALVRLKSS-IEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGK 559 (564)
Q Consensus 498 ~~~r~~~~l~~~~~~L~~~~~~-l~~~l~~el~~~eLr~a~~~L~eitG~~~~e~iL~~IF~~ 559 (564)
...||.+.+..+.+.+.+.+.. +.++++.+...++|+.++. +|+++|....|+||+.||++
T Consensus 287 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~~~~~ 348 (349)
T 2www_A 287 TAKRRKQQKVWMWNLIQESVLEHFRTHPTVREQIPLLEQKVL-IGALSPGLAADFLLKAFKSR 348 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH-TTSSCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcC
Confidence 6688888888888888776655 6677788889999999999 99999999999999999985
No 10
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.87 E-value=6.3e-22 Score=193.66 Aligned_cols=155 Identities=15% Similarity=0.190 Sum_probs=114.6
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccc-cCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEI-AGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~-~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
.+||+|+|++|||||||+++++...+. ..+ |.+..+.....+.+++. .+.||||+|+.++.... ..+
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f~--~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~--------~~~ 82 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSFD--NTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLI--------PSY 82 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC------------CEEEEEECSSCEEEEEEECCSCTTTCGGGH--------HHH
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCCC--CCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHH--------HHH
Confidence 489999999999999999999988753 343 44445666667777764 56789999998876653 345
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVT 469 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAkt 469 (564)
++.+|++++|||+++..++.....|.. +... ...+.|+|+|+||+|+...+.... ++++. ...+++++||++
T Consensus 83 ~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~---~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAkt 159 (216)
T 4dkx_A 83 IRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE---RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKA 159 (216)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH---HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTT
T ss_pred hccccEEEEEeecchhHHHHHHHHHHHHHHHh---cCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCC
Confidence 899999999999999888887755443 3322 235789999999999976654433 33333 346799999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 008468 470 GQGIQDLETAIMKIVG 485 (564)
Q Consensus 470 g~GI~eL~~~L~~~l~ 485 (564)
|.||+++|+.|.+.+.
T Consensus 160 g~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 160 GYNVKQLFRRVAAALP 175 (216)
T ss_dssp TBSHHHHHHHHHHHC-
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999998774
No 11
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.87 E-value=2.3e-22 Score=216.68 Aligned_cols=164 Identities=30% Similarity=0.470 Sum_probs=124.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchh---HHHHhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDD---IVEKIGVERSEA 393 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~---~ie~~~i~~~~~ 393 (564)
..++|+++|++|||||||+|+|++.++..++++++||++.....+.+++..+.||||||+++... .+|.+...++..
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 45899999999999999999999999888899999999999889999999999999999865332 234444555566
Q ss_pred hhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh----hhhcc-----cCCcEEE
Q 008468 394 VALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW----NKVGN-----SFNDHVF 464 (564)
Q Consensus 394 ~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~----~~l~~-----~~~~~i~ 464 (564)
+++.+|++++|+|++++.+.++..++..+.. .++|+++|+||+|+.+...... +++.. ...++++
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE------AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 327 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHHHHHHHHHH------TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhCCEEEEEEcCCcCCcHHHHHHHHHHHH------cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 7899999999999999999888776655543 3689999999999986544221 12221 2468999
Q ss_pred EeccCCCCHHHHHHHHHHHhhc
Q 008468 465 TCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 465 iSAktg~GI~eL~~~L~~~l~~ 486 (564)
+||++|.|++++++.+.+.+..
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999987753
No 12
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.86 E-value=7.3e-22 Score=212.96 Aligned_cols=161 Identities=29% Similarity=0.423 Sum_probs=112.9
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCch-hHHHHhhhhhhhhhhhc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD-DIVEKIGVERSEAVALG 397 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~-~~ie~~~i~~~~~~l~~ 397 (564)
.+|+|+|.||||||||+|+|++...++++++||+|+|.....+.+++..+.+|||||+.... +.........+..+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 47999999999999999999999888899999999999999999999999999999987532 11111112345667899
Q ss_pred CcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhcc-cCCcEEEEeccCCCCHHH
Q 008468 398 ADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGN-SFNDHVFTCAVTGQGIQD 475 (564)
Q Consensus 398 aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~-~~~~~i~iSAktg~GI~e 475 (564)
||++++|+|++++.+..+..+...+... ++|+++|+||+|+........ .++.. .+.+++++||++|.|+++
T Consensus 82 ad~il~V~D~~~~~~~~d~~i~~~l~~~------~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~ 155 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDESLADFLRKS------TVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDT 155 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHHH------TCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHc------CCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCCHHH
Confidence 9999999999998887776555544432 689999999999854211111 22322 234789999999999999
Q ss_pred HHHHHHHHhh
Q 008468 476 LETAIMKIVG 485 (564)
Q Consensus 476 L~~~L~~~l~ 485 (564)
|++.+.+.+.
T Consensus 156 L~~~i~~~l~ 165 (439)
T 1mky_A 156 MLETIIKKLE 165 (439)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 9999988774
No 13
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.86 E-value=9.4e-22 Score=183.24 Aligned_cols=159 Identities=25% Similarity=0.354 Sum_probs=121.1
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+.++|+++|++|||||||+|+|++..+. ....+++|.+.....+.+++..+.+|||||+..+.... ..+
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~ 75 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVT-EQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMR--------ARG 75 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSS-CSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSC--------CSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccc-cCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHH--------HHH
Confidence 345689999999999999999999998753 45566777776667778899999999999987665432 244
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhc------ccC---CcEEE
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVG------NSF---NDHVF 464 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~------~~~---~~~i~ 464 (564)
+..+|++++|+|++++......+.+..+.. .+.|+++|+||+|+........ +.+. ... .++++
T Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~------~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (178)
T 2lkc_A 76 AQVTDIVILVVAADDGVMPQTVEAINHAKA------ANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCK 149 (178)
T ss_dssp CCCCCEEEEEEETTCCCCHHHHHHHHHHGG------GSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEE
T ss_pred HhhCCEEEEEEECCCCCcHHHHHHHHHHHh------CCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEE
Confidence 788999999999998777766666655432 3689999999999976432221 1111 111 37899
Q ss_pred EeccCCCCHHHHHHHHHHHhhccC
Q 008468 465 TCAVTGQGIQDLETAIMKIVGLHQ 488 (564)
Q Consensus 465 iSAktg~GI~eL~~~L~~~l~~~~ 488 (564)
+||++|.|+++++++|.+.+....
T Consensus 150 ~Sa~~~~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 150 LSAKTKEGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHHTT
T ss_pred EecCCCCCHHHHHHHHHHhhhhhc
Confidence 999999999999999999876543
No 14
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.86 E-value=1.5e-21 Score=179.70 Aligned_cols=155 Identities=22% Similarity=0.231 Sum_probs=97.9
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+++|++|||||||+|+|.+.....+.+.++++.+ ..+.+++ ..+.+|||||...+.... ..++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~ 70 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGGRWLP--------GHCM 70 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEEEEEEEEECCCCccchhhh--------hhhh
Confidence 48999999999999999999998877666666666654 3345555 457899999987654432 2457
Q ss_pred hcCcEEEEEecCCCCCChhHHHHH-HHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELL-NRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l-~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
..+|++++|+|++++.++.....| ..+.... ...+.|+++|+||+|+.+...... +.+.. ...+++++||++|
T Consensus 71 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (166)
T 3q72_A 71 AMGDAYVIVYSVTDKGSFEKASELRVQLRRAR--QTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALH 148 (166)
T ss_dssp --CCEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGT
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCC
Confidence 899999999999987666655433 3333321 235789999999999986554432 22222 3368999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 008468 471 QGIQDLETAIMKIVG 485 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~ 485 (564)
.|+++++++|.+.+.
T Consensus 149 ~gi~~l~~~l~~~~~ 163 (166)
T 3q72_A 149 HNVQALFEGVVRQIR 163 (166)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
No 15
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.86 E-value=5.3e-21 Score=176.72 Aligned_cols=158 Identities=18% Similarity=0.206 Sum_probs=115.3
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
.++.++|+++|++|||||||+|+|.+..+. ...| |.+.....+.+++..+.+|||||...+... ...+
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--------~~~~ 71 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVV--TTIP--TIGFNVETVTYKNLKFQVWDLGGLTSIRPY--------WRCY 71 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCC--CCCC--CSSEEEEEEEETTEEEEEEEECCCGGGGGG--------GGGG
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC--CcCC--cCccceEEEEECCEEEEEEECCCChhhhHH--------HHHH
Confidence 456799999999999999999999987753 2222 223445567778999999999998765433 2345
Q ss_pred hhcCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhc-----ccCCcEEEEe
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVG-----NSFNDHVFTC 466 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~-----~~~~~~i~iS 466 (564)
+..+|++++|+|++++.++.... .+..+.... ...+.|+++|+||+|+.+...... +.+. ....+++++|
T Consensus 72 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 149 (171)
T 1upt_A 72 YSNTDAVIYVVDSCDRDRIGISKSELVAMLEEE--ELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTS 149 (171)
T ss_dssp CTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCG--GGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECC
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhch--hhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECc
Confidence 78999999999999987776553 333333321 124789999999999987543222 2211 1223689999
Q ss_pred ccCCCCHHHHHHHHHHHhhc
Q 008468 467 AVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 467 Aktg~GI~eL~~~L~~~l~~ 486 (564)
|++|.|+++++++|.+.+..
T Consensus 150 a~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 150 ATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp TTTCTTHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHhh
Confidence 99999999999999988753
No 16
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.86 E-value=5.9e-22 Score=214.69 Aligned_cols=165 Identities=30% Similarity=0.475 Sum_probs=127.7
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCch---hHHHHhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD---DIVEKIGVERSE 392 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~---~~ie~~~i~~~~ 392 (564)
...++|+++|.+|||||||+|+|++.+...++++++||++.....+.+++..+.||||||+++.. ...+.+...++.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 34689999999999999999999999888899999999999888889999999999999986432 123444455566
Q ss_pred hhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh----hhhcc-----cCCcEE
Q 008468 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW----NKVGN-----SFNDHV 463 (564)
Q Consensus 393 ~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~----~~l~~-----~~~~~i 463 (564)
.+++.+|++++|+|++++.+.++..++..+.. .++|+|+|+||+|+.+...... +.+.+ ...+++
T Consensus 273 ~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~------~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE------AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 346 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH------TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH------cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence 67899999999999999888887776666554 3689999999999986554322 12222 246899
Q ss_pred EEeccCCCCHHHHHHHHHHHhhc
Q 008468 464 FTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 464 ~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
++||++|.|++++++.+.+.+..
T Consensus 347 ~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 347 FMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHH
T ss_pred EEcCCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999988754
No 17
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.86 E-value=1.8e-21 Score=181.31 Aligned_cols=156 Identities=22% Similarity=0.188 Sum_probs=117.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+||+|+|++|||||||+|+|++..+. ....++++.+.....+.+++ ..+.+|||||...+... ...+
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~ 78 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTI--------TSTY 78 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSC--------CGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhh--------HHHH
Confidence 3489999999999999999999998764 45667778888888888888 67889999997655433 2345
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhc-ccCCcEEEEeccC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVG-NSFNDHVFTCAVT 469 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~-~~~~~~i~iSAkt 469 (564)
+..+|++++|+|++++.++.....|.. +... ..+.|+++|+||+|+.+...... ..+. ....+++++||++
T Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 154 (181)
T 3tw8_B 79 YRGTHGVIVVYDVTSAESFVNVKRWLHEINQN----CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKE 154 (181)
T ss_dssp GTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCC
Confidence 889999999999998766665543332 3222 34789999999999876544332 2222 2345899999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 008468 470 GQGIQDLETAIMKIVG 485 (564)
Q Consensus 470 g~GI~eL~~~L~~~l~ 485 (564)
|.|+++++++|.+.+.
T Consensus 155 ~~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 155 NVNVEEMFNCITELVL 170 (181)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998774
No 18
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=1.8e-21 Score=187.06 Aligned_cols=171 Identities=20% Similarity=0.224 Sum_probs=115.8
Q ss_pred HHHHHHhhhhhhhcCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCch
Q 008468 303 ENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETD 380 (564)
Q Consensus 303 ~~ll~~~~~~~~~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~ 380 (564)
+.+......+......++|+|+|++|||||||+|+|++..+. ....++++.+.....+.+++ ..+.||||||...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 83 (213)
T 3cph_A 5 RTVSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFR 83 (213)
T ss_dssp ---------------CEEEEEECSTTSSHHHHHHHHHHCCCC-CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGT
T ss_pred hhhhcccCCCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHH
Confidence 334444444444566799999999999999999999988753 34556667777777788888 578999999986544
Q ss_pred hHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcc
Q 008468 381 DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGN 457 (564)
Q Consensus 381 ~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~ 457 (564)
.. ...++..+|++++|+|++++.++.....|. .+... ...+.|+++|+||+|+........ +.+..
T Consensus 84 ~~--------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 152 (213)
T 3cph_A 84 TI--------TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEH---ANDEAQLLLVGNKSDMETRVVTADQGEALAK 152 (213)
T ss_dssp CC--------CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH---TTTCSEEEEEEECTTCSSCCSCHHHHHHHHH
T ss_pred HH--------HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCEEEEEECCCCcccccCHHHHHHHHH
Confidence 32 235588999999999999876665544333 33322 224689999999999943322111 22322
Q ss_pred -cCCcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 458 -SFNDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 458 -~~~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
...+++++||++|.|+++++++|.+.+.
T Consensus 153 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 153 ELGIPFIESSAKNDDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp HHTCCEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred HcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2357999999999999999999988764
No 19
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.86 E-value=8.5e-22 Score=212.23 Aligned_cols=161 Identities=30% Similarity=0.409 Sum_probs=108.5
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGA 398 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~a 398 (564)
++|+|+|.||||||||+|+|++...+++.+.+|+|+|.....+.+++..+.+|||||+..............+..++..|
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999888899999999999999999999999999999996322112222234456678999
Q ss_pred cEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcccCCcEEEEeccCCCCHHHHHH
Q 008468 399 DVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLET 478 (564)
Q Consensus 399 D~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL~~ 478 (564)
|++|+|+|++++.+..+..+...+.. .++|+++|+||+|+........+.+...+.+++++||++|.|+++|++
T Consensus 84 d~il~vvD~~~~~~~~d~~~~~~l~~------~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~ 157 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAADEEVAKILYR------TKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLD 157 (436)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHTT------CCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHHHHHH
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHH------cCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCChHHHHH
Confidence 99999999999888877655444432 368999999999997543211111112234789999999999999999
Q ss_pred HHHHHhh
Q 008468 479 AIMKIVG 485 (564)
Q Consensus 479 ~L~~~l~ 485 (564)
++.+.+.
T Consensus 158 ~i~~~l~ 164 (436)
T 2hjg_A 158 AVAEHFK 164 (436)
T ss_dssp HHHHTGG
T ss_pred HHHHhcC
Confidence 9998775
No 20
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=4.2e-21 Score=179.14 Aligned_cols=160 Identities=21% Similarity=0.223 Sum_probs=115.5
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEA 393 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~ 393 (564)
...+||+++|++|||||||+|+|++..+......+.++.+.....+.+++. .+.+|||||...+... ...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--------~~~ 79 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSV--------THA 79 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC----------------C
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHH--------HHH
Confidence 345899999999999999999999988654455566777777666777775 6789999998765443 234
Q ss_pred hhhcCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEecc
Q 008468 394 VALGADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAV 468 (564)
Q Consensus 394 ~l~~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAk 468 (564)
++..+|++++|+|++++.+..+...|. .+... ...+.|+++|+||+|+........ +.+.. ...+++++||+
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 156 (180)
T 2g6b_A 80 YYRDAHALLLLYDVTNKASFDNIQAWLTEIHEY---AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAK 156 (180)
T ss_dssp CGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHH---SCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh---CCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCC
Confidence 578999999999999876666554333 33322 124789999999999986543322 22222 23589999999
Q ss_pred CCCCHHHHHHHHHHHhhc
Q 008468 469 TGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 469 tg~GI~eL~~~L~~~l~~ 486 (564)
+|.|+++++++|.+.+..
T Consensus 157 ~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 157 TGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988753
No 21
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.86 E-value=6e-21 Score=180.82 Aligned_cols=159 Identities=17% Similarity=0.173 Sum_probs=120.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+||+|+|++|||||||+|+|++..+. ....++++.+.....+.+++ ..+.+|||||...+.... ..+
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~ 85 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT--------SSY 85 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTH--------HHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhH--------HHH
Confidence 3489999999999999999999998753 35567777888888888887 568899999987654432 345
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
+..+|++++|+|++++.++.....|...... ....+.|+++|+||+|+........ +.+.. ...+++++||++|
T Consensus 86 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~--~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 163 (196)
T 3tkl_A 86 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDR--YASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNA 163 (196)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHH--HSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTC
T ss_pred HhhCCEEEEEEECcCHHHHHHHHHHHHHHHH--hcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCC
Confidence 8899999999999987666655444332222 1234789999999999976654432 23332 3368999999999
Q ss_pred CCHHHHHHHHHHHhhc
Q 008468 471 QGIQDLETAIMKIVGL 486 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~~ 486 (564)
.|+++++++|.+.+..
T Consensus 164 ~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 164 TNVEQSFMTMAAEIKK 179 (196)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998754
No 22
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.85 E-value=2.9e-21 Score=187.38 Aligned_cols=164 Identities=17% Similarity=0.175 Sum_probs=120.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC-cceeccccCeeEEEEEEEEE-ECCeeeEEEeCCCCCCch---hHHHHhh--hh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE-RAIVTEIAGTTRDVIEASVT-VCGVPVTLLDTAGIRETD---DIVEKIG--VE 389 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~-~~~vs~~~gtT~d~~~~~~~-~~g~~i~LiDTpG~~~~~---~~ie~~~--i~ 389 (564)
..++|+|+|.+|||||||+|+|++.+ .+.++..+++|.+.....+. .++..+.||||||+.+.. ...+.+. ..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 45899999999999999999999987 45778899999887766665 567899999999986531 1111110 11
Q ss_pred hhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh------hhhcc------
Q 008468 390 RSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW------NKVGN------ 457 (564)
Q Consensus 390 ~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~------~~l~~------ 457 (564)
........+|++++|+|++++.+..+..++..+.. .+.|+++|+||+|+........ +.+..
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 181 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP------TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY 181 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG------GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh------cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence 11122344899999999998877776666665543 3689999999999986543221 12222
Q ss_pred -cCCcEEEEeccCCCCHHHHHHHHHHHhhc
Q 008468 458 -SFNDHVFTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 458 -~~~~~i~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
...+++++||++|.|+++++++|.+.+..
T Consensus 182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 182 AGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp CSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 34579999999999999999999998854
No 23
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.85 E-value=1.4e-21 Score=181.54 Aligned_cols=155 Identities=23% Similarity=0.267 Sum_probs=107.4
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh--h
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA--L 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l--~ 396 (564)
++|+++|++|||||||+|+|++... .++.++++|.+.....+.+++..+.+|||||+..+........+. ..++ .
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~--~~~~~~~ 80 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIA--RDYIINE 80 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS-SCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHH--HHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe-eccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHH--HHHHhcC
Confidence 7899999999999999999998764 457788888888777888889999999999998653211111111 2233 4
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcc--hhhhhcc-cCCcEEEEeccCCCCH
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN--EWNKVGN-SFNDHVFTCAVTGQGI 473 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~--~~~~l~~-~~~~~i~iSAktg~GI 473 (564)
.+|++++|+|+++.. .....+..+.. .+.|+++|+||+|+...... ..+.+.+ ...+++++||++|.|+
T Consensus 81 ~~~~~i~v~D~~~~~--~~~~~~~~~~~------~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v 152 (165)
T 2wji_A 81 KPDLVVNIVDATALE--RNLYLTLQLME------MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGI 152 (165)
T ss_dssp CCSEEEEEEETTCHH--HHHHHHHHHHH------TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred CCCEEEEEecCCchh--HhHHHHHHHHh------cCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCH
Confidence 899999999998621 11222333322 26899999999998543221 1123332 2357999999999999
Q ss_pred HHHHHHHHHHh
Q 008468 474 QDLETAIMKIV 484 (564)
Q Consensus 474 ~eL~~~L~~~l 484 (564)
++++++|.+.+
T Consensus 153 ~~l~~~l~~~~ 163 (165)
T 2wji_A 153 EELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 24
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.85 E-value=3.6e-21 Score=178.54 Aligned_cols=158 Identities=21% Similarity=0.253 Sum_probs=104.4
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+|+|++|||||||+|+|++..+......++++. ....+.+++. .+.+|||||...... ......++
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~~~ 75 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDV--YERTLTVDGEDTTLVVVDTWEAEKLDK------SWSQESCL 75 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSE--EEEEEEETTEEEEEEEECCC-------------CHHHHHTT
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccce--eEEEEEECCEEEEEEEEecCCCCccch------hhhHHhhc
Confidence 4899999999999999999999988665545555543 3445566664 678999999865310 01123457
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
..+|++++|+|++++.++.....|.. +.... ...+.|+++|+||+|+.+...... +.+.. ...+++++||++|
T Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g 153 (175)
T 2nzj_A 76 QGGSAYVIVYSIADRGSFESASELRIQLRRTH--QADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQ 153 (175)
T ss_dssp TSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC------CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--ccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCC
Confidence 88999999999998766665543433 33321 124689999999999976544332 22222 2357999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 008468 471 QGIQDLETAIMKIVG 485 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~ 485 (564)
.|+++++++|.+.+.
T Consensus 154 ~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 154 HNVAELFEGVVRQLR 168 (175)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998774
No 25
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.85 E-value=7e-21 Score=178.82 Aligned_cols=156 Identities=23% Similarity=0.261 Sum_probs=116.2
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCee--eEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVP--VTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~--i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+|+|++|||||||+|+|++..+ ...+++|+.+.....+.+++.. +.+|||||..++..... .++
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--------~~~ 73 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD--------QYM 73 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC--CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHH--------HHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHH--------HHH
Confidence 48999999999999999999998874 5677778888777778888765 66799999876654432 457
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcc-cCCcEEEEeccCCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGN-SFNDHVFTCAVTGQ 471 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~-~~~~~i~iSAktg~ 471 (564)
..+|++++|+|++++.++.....|.. +.... ...+.|+++|+||+|+........ +.+.. ...+++++||++|.
T Consensus 74 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 151 (189)
T 4dsu_A 74 RTGEGFLCVFAINNTKSFEDIHHYREQIKRVK--DSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQ 151 (189)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT--TCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCT
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 88999999999998766665543333 33321 234789999999999975433222 23322 23589999999999
Q ss_pred CHHHHHHHHHHHhh
Q 008468 472 GIQDLETAIMKIVG 485 (564)
Q Consensus 472 GI~eL~~~L~~~l~ 485 (564)
|+++++++|.+.+.
T Consensus 152 gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 152 GVDDAFYTLVREIR 165 (189)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998774
No 26
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.85 E-value=7.2e-21 Score=191.04 Aligned_cols=159 Identities=26% Similarity=0.343 Sum_probs=118.9
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhc
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALG 397 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~ 397 (564)
.++|+++|++|||||||+|+|++..+ .++++|++|.+.....+..++..+.+|||||+..+........+.+.......
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~-~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 83 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGD 83 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcC
Confidence 48999999999999999999999875 47889999999999999999999999999999865432111112222211268
Q ss_pred CcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcch--hhhhcc-cCCcEEEEeccCCCCHH
Q 008468 398 ADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE--WNKVGN-SFNDHVFTCAVTGQGIQ 474 (564)
Q Consensus 398 aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~--~~~l~~-~~~~~i~iSAktg~GI~ 474 (564)
+|++++|+|+++.. ....++..+.. .+.|+++|+||+|+....... .+.+.+ ...+++++||++|.|++
T Consensus 84 ~d~ii~V~D~t~~~--~~~~~~~~l~~------~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~ 155 (258)
T 3a1s_A 84 ADLVILVADSVNPE--QSLYLLLEILE------MEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLE 155 (258)
T ss_dssp CSEEEEEEETTSCH--HHHHHHHHHHT------TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHH
T ss_pred CCEEEEEeCCCchh--hHHHHHHHHHh------cCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHH
Confidence 99999999998742 22333334432 368999999999986433222 133332 23689999999999999
Q ss_pred HHHHHHHHHhh
Q 008468 475 DLETAIMKIVG 485 (564)
Q Consensus 475 eL~~~L~~~l~ 485 (564)
++++.+.+.+.
T Consensus 156 el~~~i~~~~~ 166 (258)
T 3a1s_A 156 ELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 27
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.85 E-value=7.1e-21 Score=186.37 Aligned_cols=161 Identities=21% Similarity=0.241 Sum_probs=113.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchh----HHHHhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDD----IVEKIGVERSE 392 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~----~ie~~~i~~~~ 392 (564)
..++|+|+|++|||||||+|+|++..+. +.+++++|++.....+.+++..+.+|||||+.+... .++... ..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~---~~ 103 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTT---IT 103 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHH---HH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHH---HH
Confidence 4589999999999999999999998864 677889999888888888899999999999964211 111111 12
Q ss_pred hhhhcCcEEEEEecCCCCCChhHH---HHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh------hhhcccC---C
Q 008468 393 AVALGADVIIMTVSAVDGWTSEDS---ELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW------NKVGNSF---N 460 (564)
Q Consensus 393 ~~l~~aD~vl~ViD~s~~~s~~~~---~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~------~~l~~~~---~ 460 (564)
.++..+|++++|+|++++.++... ..+..+.. ...+.|+++|+||+|+........ +.+.... .
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKS----VFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPI 179 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHT----CC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCE
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHH----hhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCc
Confidence 336788999999999988765422 22333322 123789999999999976544321 2232222 5
Q ss_pred cEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 461 DHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 461 ~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
+++++||++|.|+++++++|.+.+.
T Consensus 180 ~~~~~SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 180 KFSSFSTLTGVGVEQAKITACELLK 204 (228)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eEEEEecccCCCHHHHHHHHHHHHH
Confidence 7999999999999999999998774
No 28
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.85 E-value=5e-21 Score=175.40 Aligned_cols=156 Identities=21% Similarity=0.246 Sum_probs=114.7
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCee--eEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVP--VTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~--i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+++|++|||||||+|+|++..+. ..+.+++.+.....+.+++.. +.+|||||..++..... .++
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~--------~~~ 72 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRD--------LYI 72 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHH--------HHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCc--ccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHH--------HHh
Confidence 479999999999999999999988743 455556556666677777754 78999999887655432 447
Q ss_pred hcCcEEEEEecCCCCCChhHHHHH-HHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELL-NRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l-~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
..+|++++|+|++++.+..+...| ..+.... ...+.|+++|+||+|+........ ..+.. ...+++++||++|
T Consensus 73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 150 (167)
T 1kao_A 73 KNGQGFILVYSLVNQQSFQDIKPMRDQIIRVK--RYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSK 150 (167)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT--TTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCH
T ss_pred ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCC
Confidence 889999999999987665554333 3333321 124789999999999865443322 22222 2357999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 008468 471 QGIQDLETAIMKIVG 485 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~ 485 (564)
.|+++++++|.+.+.
T Consensus 151 ~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 151 TMVDELFAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999988764
No 29
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.85 E-value=1.9e-21 Score=181.12 Aligned_cols=160 Identities=18% Similarity=0.170 Sum_probs=114.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC---eeeEEEeCCCCCCchhHHHHhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG---VPVTLLDTAGIRETDDIVEKIGVERSEA 393 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g---~~i~LiDTpG~~~~~~~ie~~~i~~~~~ 393 (564)
..+||+|+|++|||||||+|+|++..+. ....+.++.+.....+.+++ ..+.+|||||...+.... ..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~--------~~ 75 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFG-KQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKML--------DK 75 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTT-HHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTH--------HH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCC-CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchh--------hH
Confidence 3489999999999999999999988753 22234444566677777776 688999999987665442 34
Q ss_pred hhhcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCC-EEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEec
Q 008468 394 VALGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTP-MILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCA 467 (564)
Q Consensus 394 ~l~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~P-vIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSA 467 (564)
++..+|++++|+|++++.++.+...|.. +..... ...+.| +++|+||+|+.+...... +.+.. ...+++++||
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 154 (178)
T 2hxs_A 76 YIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSE-ESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSA 154 (178)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHH-HHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECT
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhc-ccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeC
Confidence 5889999999999998766665544433 222110 011345 899999999975433222 23322 2357999999
Q ss_pred cCCCCHHHHHHHHHHHhhc
Q 008468 468 VTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 468 ktg~GI~eL~~~L~~~l~~ 486 (564)
++|.|+++++++|.+.+..
T Consensus 155 ~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 155 KTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp TTCTTHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998754
No 30
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.85 E-value=1.2e-20 Score=178.04 Aligned_cols=156 Identities=22% Similarity=0.288 Sum_probs=113.0
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
...++|+++|++|||||||+|+|.+.....+.+..+. ....+.+++..+.+|||||...+...+ ..++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~----~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~~ 81 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGF----NIKSVQSQGFKLNVWDIGGQRKIRPYW--------RSYF 81 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTE----EEEEEEETTEEEEEEECSSCGGGHHHH--------HHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCe----EEEEEEECCEEEEEEECCCCHHHHHHH--------HHHh
Confidence 3568999999999999999999999875444444443 234566788999999999987654432 3457
Q ss_pred hcCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhc-----ccCCcEEEEec
Q 008468 396 LGADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVG-----NSFNDHVFTCA 467 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~-----~~~~~~i~iSA 467 (564)
..+|++++|+|++++.++.+.. .+..+.... ...+.|+++|+||+|+........ +.+. ....+++++||
T Consensus 82 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (181)
T 1fzq_A 82 ENTDILIYVIDSADRKRFEETGQELTELLEEE--KLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSA 159 (181)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHTTCG--GGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCT
T ss_pred CCCCEEEEEEECcCHHHHHHHHHHHHHHHhCh--hhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccC
Confidence 8999999999999877666543 233333221 124789999999999986544322 1111 12246899999
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 008468 468 VTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 468 ktg~GI~eL~~~L~~~l~ 485 (564)
++|.|+++++++|.+.+.
T Consensus 160 ~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 160 LTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp TTCTTHHHHHHHHHHTC-
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988653
No 31
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.85 E-value=5.4e-21 Score=175.69 Aligned_cols=153 Identities=19% Similarity=0.222 Sum_probs=110.0
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGA 398 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~a 398 (564)
+||+++|++|||||||+|+|++..+. ...| |.+.....+..++..+.+|||||+..+.... ..++..+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~~~~~ 68 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLW--------RHYFQNT 68 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS--CCCC--CSSCCEEEEECSSCEEEEEECCCCGGGHHHH--------HHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC--cccC--cCceeEEEEEECCEEEEEEEcCCChhhHHHH--------HHHhccC
Confidence 58999999999999999999987753 3333 2334445567788999999999997654432 3458899
Q ss_pred cEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhc-----ccCCcEEEEeccCC
Q 008468 399 DVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVG-----NSFNDHVFTCAVTG 470 (564)
Q Consensus 399 D~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~-----~~~~~~i~iSAktg 470 (564)
|++++|+|++++.++.... .+..+.... ...+.|+++|+||+|+.+...... +.+. ....+++++||++|
T Consensus 69 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 146 (164)
T 1r8s_A 69 QGLIFVVDSNDRERVNEAREELMRMLAED--ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSG 146 (164)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCG--GGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhch--hhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCC
Confidence 9999999999876666543 333333221 124689999999999976533221 1111 12235899999999
Q ss_pred CCHHHHHHHHHHHhh
Q 008468 471 QGIQDLETAIMKIVG 485 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~ 485 (564)
.|+++++++|.+.+.
T Consensus 147 ~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 147 DGLYEGLDWLSNQLR 161 (164)
T ss_dssp BTHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999988764
No 32
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.85 E-value=9.3e-21 Score=190.06 Aligned_cols=156 Identities=18% Similarity=0.239 Sum_probs=116.8
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhH----HHHhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDI----VEKIGVERSEAV 394 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~----ie~~~i~~~~~~ 394 (564)
.+|+++|.+|||||||+|+|++.. ..++++|++|.+.....+.+++..+.+|||||+..+... .....+.+....
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 479999999999999999999987 468899999999999999999999999999999866431 111112222222
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcc-cCCcEEEEeccCCC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGN-SFNDHVFTCAVTGQ 471 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~-~~~~~i~iSAktg~ 471 (564)
...+|++++|+|+++. .....+..++.. .+.|+++|+||+|+........ +.+.+ ...+++++||++|.
T Consensus 81 ~~~~d~vi~VvDas~~--~~~~~l~~~l~~------~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 81 DLEYDCIINVIDACHL--ERHLYLTSQLFE------LGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HSCCSEEEEEEEGGGH--HHHHHHHHHHTT------SCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTB
T ss_pred hCCCCEEEEEeeCCCc--hhHHHHHHHHHH------cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCC
Confidence 2889999999999872 222233333332 3789999999999865433221 23332 23689999999999
Q ss_pred CHHHHHHHHHHH
Q 008468 472 GIQDLETAIMKI 483 (564)
Q Consensus 472 GI~eL~~~L~~~ 483 (564)
|++++++.|.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999999886
No 33
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.85 E-value=7.3e-21 Score=174.52 Aligned_cols=156 Identities=21% Similarity=0.204 Sum_probs=113.2
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+++|++|||||||+|+|++..+ ...+.+|+.+.....+.+++. .+.+|||||..++.... ..++
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--------~~~~ 73 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIR--------DNYF 73 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHH--------HHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHH--------HHHh
Confidence 48999999999999999999999874 456666666666666677764 67899999987665443 3457
Q ss_pred hcCcEEEEEecCCCCCChhHHHHH-HHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhc-ccCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELL-NRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVG-NSFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l-~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~-~~~~~~i~iSAktg 470 (564)
..+|++++|+|++++.++.....| ..+.... ...+.|+++|+||+|+.+...... ..+. ....+++++||++|
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (168)
T 1u8z_A 74 RSGEGFLCVFSITEMESFAATADFREQILRVK--EDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTR 151 (168)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH--CCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTC
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCC
Confidence 889999999999987666555333 3333321 124689999999999976443322 2222 23357999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 008468 471 QGIQDLETAIMKIVG 485 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~ 485 (564)
.|+++++++|.+.+.
T Consensus 152 ~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 152 ANVDKVFFDLMREIR 166 (168)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988764
No 34
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.85 E-value=7.5e-21 Score=174.78 Aligned_cols=155 Identities=20% Similarity=0.205 Sum_probs=113.8
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+++|++|||||||+|+|++..+ ...+.+|+.+.....+.+++ ..+.+|||||...+.... ..++
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--------~~~~ 72 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMR--------DLYM 72 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHH--------HHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHH--------HHHh
Confidence 37999999999999999999998764 34555666555555566654 467899999988765543 2457
Q ss_pred hcCcEEEEEecCCCCCChhHHHHH-HHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhccc--CCcEEEEeccC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELL-NRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGNS--FNDHVFTCAVT 469 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l-~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~~--~~~~i~iSAkt 469 (564)
..+|++++|+|++++.++.....| ..+.... ...+.|+++|+||+|+.+...... ..+... ..+++++||++
T Consensus 73 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (167)
T 1c1y_A 73 KNGQGFALVYSITAQSTFNDLQDLREQILRVK--DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKS 150 (167)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH--CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCC
Confidence 889999999999987666554333 3333321 134789999999999976443322 333332 46799999999
Q ss_pred CCCHHHHHHHHHHHh
Q 008468 470 GQGIQDLETAIMKIV 484 (564)
Q Consensus 470 g~GI~eL~~~L~~~l 484 (564)
|.|+++++++|.+.+
T Consensus 151 ~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 151 KINVNEIFYDLVRQI 165 (167)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998876
No 35
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.85 E-value=5.6e-21 Score=181.84 Aligned_cols=158 Identities=20% Similarity=0.223 Sum_probs=113.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+||+|+|.+|||||||+|+|++..+. ....+.++.+.....+.+++ ..+.+|||||...+.... ..+
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~--------~~~ 95 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFC-EACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSIT--------SAY 95 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHH--------HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCC-cCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHH--------HHH
Confidence 3489999999999999999999988754 23345555666667777776 468899999987655432 345
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhccc--CCcEEEEeccC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGNS--FNDHVFTCAVT 469 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~~--~~~~i~iSAkt 469 (564)
+..+|++|+|+|++++.++.+...|....... ...+.|+++|+||+|+........ +++... ..+++++||++
T Consensus 96 ~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~--~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~ 173 (192)
T 2il1_A 96 YRSAKGIILVYDITKKETFDDLPKWMKMIDKY--ASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKD 173 (192)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTT
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCC
Confidence 78999999999999877776665454333221 234789999999999975443322 333332 45789999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 008468 470 GQGIQDLETAIMKIVG 485 (564)
Q Consensus 470 g~GI~eL~~~L~~~l~ 485 (564)
|.|+++++++|.+.+.
T Consensus 174 g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 174 NFNVDEIFLKLVDDIL 189 (192)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988764
No 36
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.85 E-value=3.6e-21 Score=218.39 Aligned_cols=211 Identities=15% Similarity=0.154 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCC--CcccHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcEEEEEcCCCCChhHH
Q 008468 257 SLVTSVRAKCIELLTEIEARLDFDDEM--PPLNLNLVMDKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSL 334 (564)
Q Consensus 257 ~~i~~lr~~l~~~~a~~Ea~idf~ed~--~~~~~~~l~~~l~~l~~~l~~ll~~~~~~~~~~~~ikI~IvG~~nvGKSSL 334 (564)
+.+..||+++.++++.+|+.+||+++. +......+...+..+...+..+ .+.+++|+|+|.+|+|||||
T Consensus 15 ~~~~~~r~~L~~~l~~le~~ld~~e~~~~~~~~~~~l~~~l~~L~~~~~~l---------~~~~~~V~VvG~~naGKSSL 85 (695)
T 2j69_A 15 ERVAQVRSEMSVCLNKLAETINKAELAGDSSSGKLSLERDIEDITIASKNL---------QQGVFRLLVLGDMKRGKSTF 85 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTCCCCCHHHHHHHHHHHHHH---------HHCCEEEEEECCTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHh---------ccCCCEEEEECCCCCCHHHH
Confidence 356789999999999999999997642 2233334555555555554443 34679999999999999999
Q ss_pred HHHhhcCCcceeccccCe--------------eEEEE---------------------------------------EEEE
Q 008468 335 LNAWSKSERAIVTEIAGT--------------TRDVI---------------------------------------EASV 361 (564)
Q Consensus 335 lN~L~~~~~~~vs~~~gt--------------T~d~~---------------------------------------~~~~ 361 (564)
+|+|++.+..+++..|+| |++.. ...+
T Consensus 86 lNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~l~~~~~~~~~~v~~i~i 165 (695)
T 2j69_A 86 LNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVV 165 (695)
T ss_dssp HHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHHHHTSSCCSCTTEEEEEE
T ss_pred HHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHHHhhccccccccceEEEE
Confidence 999999988777777777 33220 0001
Q ss_pred EECC----eeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEE
Q 008468 362 TVCG----VPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMIL 437 (564)
Q Consensus 362 ~~~g----~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIv 437 (564)
.+.. ..+.||||||+.+... ....+..++..+|++|+|+|++++.+..+...|..... ..+.|+++
T Consensus 166 ~~p~~~l~~~l~LiDTPGl~~~~~-----~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~-----~~~~~iii 235 (695)
T 2j69_A 166 EYPLTLLQKGIEIVDSPGLNDTEA-----RNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK-----GRGLTVFF 235 (695)
T ss_dssp EECCHHHHTTEEEEECCCHHHHHT-----CHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT-----TSCCCEEE
T ss_pred EccchhccCCeEEEECCCCCchhh-----HHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH-----hhCCCEEE
Confidence 1111 4689999999875332 23445677899999999999999888887776654332 12578999
Q ss_pred EEecCCCCCCC---cch----------h-----hhhcc---------cCCcEEEEecc--------------CCCCHHHH
Q 008468 438 VINKIDCAPSA---SNE----------W-----NKVGN---------SFNDHVFTCAV--------------TGQGIQDL 476 (564)
Q Consensus 438 V~NK~DL~~~~---~~~----------~-----~~l~~---------~~~~~i~iSAk--------------tg~GI~eL 476 (564)
|+||+|+.... ... . ..+.. ...++++|||+ +|.|++++
T Consensus 236 VlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L 315 (695)
T 2j69_A 236 LVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKF 315 (695)
T ss_dssp EEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHH
T ss_pred EEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHH
Confidence 99999986542 000 0 01111 12468999999 99999999
Q ss_pred HHHHHHHhhc
Q 008468 477 ETAIMKIVGL 486 (564)
Q Consensus 477 ~~~L~~~l~~ 486 (564)
++.|.+.+..
T Consensus 316 ~~~L~~~l~~ 325 (695)
T 2j69_A 316 MDSLNTFLTR 325 (695)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987743
No 37
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=179.21 Aligned_cols=160 Identities=15% Similarity=0.204 Sum_probs=113.7
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+.+||+|+|.+|||||||+|+|++..... ..+. .|.+.....+.+++..+.+|||||...+.... ..++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~-~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~~ 88 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQS-QNIL-PTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLW--------EHYY 88 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCC-SSCC-CCSSEEEEEEECSSCEEEEEEECCSTTTGGGG--------GGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-CCcC-CccceeEEEEEECCEEEEEEECCCCHHHHHHH--------HHHH
Confidence 445899999999999999999999886322 2232 33345566778889999999999987765432 3458
Q ss_pred hcCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhc-----ccCCcEEEEec
Q 008468 396 LGADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVG-----NSFNDHVFTCA 467 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~-----~~~~~~i~iSA 467 (564)
..+|++++|+|++++.++.+.. .+..+.........+.|+++|+||+|+........ +.+. ....+++++||
T Consensus 89 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (190)
T 2h57_A 89 KEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDA 168 (190)
T ss_dssp GGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccC
Confidence 8999999999999865555542 33334332111114789999999999976543322 1121 12347899999
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 008468 468 VTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 468 ktg~GI~eL~~~L~~~l~ 485 (564)
++|.|+++++++|.+.+.
T Consensus 169 ~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 169 IKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp TTTBTHHHHHHHHHHHC-
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 999999999999998764
No 38
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=1.4e-20 Score=177.67 Aligned_cols=158 Identities=16% Similarity=0.192 Sum_probs=111.3
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
++.++|+++|++|||||||+|+|++.++.... + |.+.....+.+++..+.+|||||..++... ...++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 81 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS--P--TIGSNVEEIVINNTRFLMWDIGGQESLRSS--------WNTYY 81 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEE--C--CSCSSCEEEEETTEEEEEEECCC----CGG--------GHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCc--C--CCccceEEEEECCEEEEEEECCCCHhHHHH--------HHHHh
Confidence 45699999999999999999999987754222 2 222333456678899999999999765443 23457
Q ss_pred hcCcEEEEEecCCCCCChhHHHH-HHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhh-----cccCCcEEEEec
Q 008468 396 LGADVIIMTVSAVDGWTSEDSEL-LNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKV-----GNSFNDHVFTCA 467 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~-l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l-----~~~~~~~i~iSA 467 (564)
..+|++++|+|++++.++..... +..+.... ...+.|+++|+||+|+........ +.+ .....+++++||
T Consensus 82 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 159 (187)
T 1zj6_A 82 TNTEFVIVVVDSTDRERISVTREELYKMLAHE--DLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA 159 (187)
T ss_dssp TTCCEEEEEEETTCTTTHHHHHHHHHHHHTSG--GGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhch--hhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccC
Confidence 89999999999999877776543 33333321 124789999999999976433222 111 122347899999
Q ss_pred cCCCCHHHHHHHHHHHhhcc
Q 008468 468 VTGQGIQDLETAIMKIVGLH 487 (564)
Q Consensus 468 ktg~GI~eL~~~L~~~l~~~ 487 (564)
++|.|+++++++|.+.+...
T Consensus 160 ~~g~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 160 LTGEGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp TTTBTHHHHHHHHHHHHCC-
T ss_pred CCCcCHHHHHHHHHHHHHHH
Confidence 99999999999999987543
No 39
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.84 E-value=1.1e-20 Score=177.91 Aligned_cols=157 Identities=16% Similarity=0.190 Sum_probs=113.1
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
+..++|+++|++|||||||+|+|++.+. ..+.+| .......+.+++..+.+|||||+.++... ...++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~---~~~~~t-~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--------~~~~~ 83 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDV---DTISPT-LGFNIKTLEHRGFKLNIWDVGGQKSLRSY--------WRNYF 83 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCC---SSCCCC-SSEEEEEEEETTEEEEEEEECCSHHHHTT--------GGGGC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCC---Cccccc-CccceEEEEECCEEEEEEECCCCHhHHHH--------HHHHh
Confidence 3569999999999999999999998772 222222 22344566778999999999998544322 23558
Q ss_pred hcCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhc-----ccCCcEEEEec
Q 008468 396 LGADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVG-----NSFNDHVFTCA 467 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~-----~~~~~~i~iSA 467 (564)
..+|++++|+|++++.++.+.. .+..+.... ...+.|+++|+||+|+........ +.+. ....+++++||
T Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1ksh_A 84 ESTDGLIWVVDSADRQRMQDCQRELQSLLVEE--RLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSA 161 (186)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG--GGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCT
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHhCh--hcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeC
Confidence 8999999999999987766543 333333321 124689999999999976544322 2221 22346899999
Q ss_pred cCCCCHHHHHHHHHHHhhc
Q 008468 468 VTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 468 ktg~GI~eL~~~L~~~l~~ 486 (564)
++|.|+++++++|.+.+..
T Consensus 162 ~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 162 VTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp TTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998754
No 40
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.84 E-value=8.9e-21 Score=176.61 Aligned_cols=158 Identities=21% Similarity=0.226 Sum_probs=117.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..++|+|+|++|||||||+|+|++..+ ...+.+|+.+.....+.+++. .+.+|||||..++.... ..+
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~--------~~~ 77 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYF--VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMR--------EQY 77 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSC--CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCH--------HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcC--ccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHH--------HHH
Confidence 348999999999999999999999863 467777777766677778774 67889999987665433 245
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHH-HHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELL-NRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVT 469 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l-~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAkt 469 (564)
+..+|++++|+|++++.+......| ..+.... ...+.|+++|+||+|+........ ..+.. ...+++++||++
T Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 155 (181)
T 2fn4_A 78 MRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK--DRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKL 155 (181)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH--TSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTT
T ss_pred HhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCC
Confidence 7889999999999987665554332 2332221 134689999999999976443322 22322 345799999999
Q ss_pred CCCHHHHHHHHHHHhhc
Q 008468 470 GQGIQDLETAIMKIVGL 486 (564)
Q Consensus 470 g~GI~eL~~~L~~~l~~ 486 (564)
|.|+++++++|.+.+..
T Consensus 156 ~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 156 RLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988753
No 41
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.84 E-value=1.8e-20 Score=192.23 Aligned_cols=161 Identities=29% Similarity=0.392 Sum_probs=125.1
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCC-CchhHHHHhhhhhhhhhhhc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIR-ETDDIVEKIGVERSEAVALG 397 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~-~~~~~ie~~~i~~~~~~l~~ 397 (564)
.+|+|+|++|||||||+|+|++...+++++.++||++.....+..++.++.+|||||+. .............+..++..
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~ 88 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGD 88 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhc
Confidence 47999999999999999999999888888899999987777788889999999999997 44333333334445667899
Q ss_pred CcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCc-chh--hhhccc--CCcEEEEeccCCCC
Q 008468 398 ADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS-NEW--NKVGNS--FNDHVFTCAVTGQG 472 (564)
Q Consensus 398 aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~-~~~--~~l~~~--~~~~i~iSAktg~G 472 (564)
+|++++|+|+++ .+..+..+++.+.. .+.|+++|+||+|+..... ... +++.+. +..++++||++|.|
T Consensus 89 ~D~vl~Vvd~~~-~~~~~~~i~~~l~~------~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~ 161 (301)
T 1ega_A 89 VELVIFVVEGTR-WTPDDEMVLNKLRE------GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN 161 (301)
T ss_dssp EEEEEEEEETTC-CCHHHHHHHHHHHS------SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred CCEEEEEEeCCC-CCHHHHHHHHHHHh------cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCC
Confidence 999999999987 77666655555432 3689999999999976211 111 334332 24689999999999
Q ss_pred HHHHHHHHHHHhhc
Q 008468 473 IQDLETAIMKIVGL 486 (564)
Q Consensus 473 I~eL~~~L~~~l~~ 486 (564)
++++++.+.+.+..
T Consensus 162 v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 162 VDTIAAIVRKHLPE 175 (301)
T ss_dssp HHHHHHHHHTTCCB
T ss_pred HHHHHHHHHHhCCc
Confidence 99999999987653
No 42
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=8.1e-21 Score=175.13 Aligned_cols=157 Identities=20% Similarity=0.233 Sum_probs=108.4
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+++|++|||||||+|+|++..+. ..+..+........+..++ ..+.+|||||..++.... ..++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~--------~~~~ 72 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFR--ESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQ--------RLSI 72 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCC--SSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHH--------HHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHH--------HHhc
Confidence 489999999999999999999987643 2222232233333444544 467899999998765443 3457
Q ss_pred hcCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
..+|++++|+|++++.+..+.. .+..+.... ....+.|+++|+||+|+.+...... +.+.. ...+++++||++|
T Consensus 73 ~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~-~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (172)
T 2erx_A 73 SKGHAFILVYSITSRQSLEELKPIYEQICEIK-GDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLN 151 (172)
T ss_dssp HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHH-C---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCC
Confidence 8899999999999876555443 333333221 1124689999999999975543322 22222 2357999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 008468 471 QGIQDLETAIMKIVG 485 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~ 485 (564)
.|+++++++|.+.+.
T Consensus 152 ~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 152 HNVKELFQELLNLEK 166 (172)
T ss_dssp BSHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999998764
No 43
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.84 E-value=1.1e-20 Score=177.52 Aligned_cols=156 Identities=16% Similarity=0.153 Sum_probs=116.5
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+|+|++|||||||+|+|++..+. ....+.++.+.....+.+++ ..+.+|||||..++... ...++
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 80 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFK-DDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSV--------TRSYY 80 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC-TTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--------HHTTS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHH--------HHHHH
Confidence 489999999999999999999988754 23455566677777777777 57889999998765543 23458
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhc-ccCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVG-NSFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~-~~~~~~i~iSAktg 470 (564)
..+|++++|+|++++.++.....|.. +... ...+.|+++|+||+|+........ ..+. ....+++++||++|
T Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 157 (186)
T 2bme_A 81 RGAAGALLVYDITSRETYNALTNWLTDARML---ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTG 157 (186)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHH---SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHh---cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCC
Confidence 89999999999998766665543332 2221 235789999999999965433322 2222 23467999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 008468 471 QGIQDLETAIMKIVG 485 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~ 485 (564)
.|++++++++.+.+.
T Consensus 158 ~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 158 ENVEEAFVQCARKIL 172 (186)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988764
No 44
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.84 E-value=3.2e-20 Score=172.67 Aligned_cols=159 Identities=18% Similarity=0.187 Sum_probs=114.0
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.++|+++|++|||||||+|+|++..+. ....+.++.+.....+.+++ ..+.+|||||...+.... ..++
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~~ 77 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKFD-TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLR--------TPFY 77 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC-C----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHH--------GGGG
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhH--------HHHH
Confidence 489999999999999999999988753 34455666677677777877 478899999987654432 3458
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHH-HHHhccc-cCCCCCCEEEEEecCCCCCCCcchh--hhhcc--cCCcEEEEeccC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLN-RIQSNKK-STESSTPMILVINKIDCAPSASNEW--NKVGN--SFNDHVFTCAVT 469 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~-~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~--~~~~~i~iSAkt 469 (564)
..+|++++|+|++++.+..+...|. .+..... ....+.|+++|+||+|+........ .++.. ...+++++||++
T Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 157 (177)
T 1wms_A 78 RGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKD 157 (177)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTT
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCC
Confidence 8999999999999876666554333 2322211 1124689999999999973322111 33322 346899999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 008468 470 GQGIQDLETAIMKIVG 485 (564)
Q Consensus 470 g~GI~eL~~~L~~~l~ 485 (564)
|.|+++++++|.+.+.
T Consensus 158 ~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 158 ATNVAAAFEEAVRRVL 173 (177)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998774
No 45
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.84 E-value=3.4e-21 Score=180.69 Aligned_cols=156 Identities=17% Similarity=0.170 Sum_probs=92.8
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+|+|++|||||||+|+|++..+. ....++++.+.....+.+++ ..+.+|||||...+... ...++
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 78 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFN-STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYY 78 (183)
T ss_dssp EEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----------------CCTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhh--------HHHHH
Confidence 489999999999999999999987643 34556677777777788887 67889999998665433 23458
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
..+|++++|+|++++.++.....|. .+... ...+.|+++|+||+|+........ +.+.. ...+++++||++|
T Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (183)
T 2fu5_C 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIEEH---ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKAN 155 (183)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHh---cCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 8999999999999876665554333 23322 234689999999999976543322 23322 2357999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 008468 471 QGIQDLETAIMKIVG 485 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~ 485 (564)
.|+++++++|.+.+.
T Consensus 156 ~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 156 INVENAFFTLARDIK 170 (183)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988764
No 46
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.84 E-value=7.4e-21 Score=178.09 Aligned_cols=158 Identities=22% Similarity=0.206 Sum_probs=117.1
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+|+|++|||||||+|+|++..+ +..+.+|+.+.....+.+++ ..+.+|||||+.++... ...++
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 75 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQF--VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF--------PQTYS 75 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCC--------CGGGT
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHH--------HHHHH
Confidence 48999999999999999999997763 46666777766677778887 45689999998765432 23457
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
+.+|++++|+|++++.++.....|. .+.... ...+.|+++|+||+|+........ +.+.. ...+++++||++|
T Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (181)
T 3t5g_A 76 IDINGYILVYSVTSIKSFEVIKVIHGKLLDMV--GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKEN 153 (181)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSH
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCC
Confidence 8999999999999876666654433 233321 234789999999999976544432 22332 3357999999999
Q ss_pred CCHHHHHHHHHHHhhcc
Q 008468 471 QGIQDLETAIMKIVGLH 487 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~~~ 487 (564)
.|++++++.|.+.+...
T Consensus 154 ~~v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 154 QTAVDVFRRIILEAEKM 170 (181)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999988643
No 47
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.84 E-value=1.2e-20 Score=179.11 Aligned_cols=161 Identities=16% Similarity=0.218 Sum_probs=113.5
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
...+||+|+|.+|||||||+|+|++..+..+ .+..|. ......+...+..+.+|||||+..+...+ ..++
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~-~~~~t~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~~ 84 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSK-HITATV-GYNVETFEKGRVAFTVFDMGGAKKFRGLW--------ETYY 84 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC-----CCCCCS-SEEEEEEEETTEEEEEEEECCSGGGGGGG--------GGGC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCccc-cccccc-ceeEEEEEeCCEEEEEEECCCCHhHHHHH--------HHHH
Confidence 3458999999999999999999999886543 222222 23344556788999999999997665442 3458
Q ss_pred hcCcEEEEEecCCCCCChhHHH-HHHHHHhcccc-----CCCCCCEEEEEecCCCCCCCcchh--hhh------cccCCc
Q 008468 396 LGADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKS-----TESSTPMILVINKIDCAPSASNEW--NKV------GNSFND 461 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~-----~~~~~PvIvV~NK~DL~~~~~~~~--~~l------~~~~~~ 461 (564)
+.+|++|+|+|++++.++.... .+..+...... ...+.|+++|+||+|+........ +.+ .....+
T Consensus 85 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (199)
T 4bas_A 85 DNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFV 164 (199)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEE
T ss_pred hcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeE
Confidence 8999999999999987776653 33434332100 012689999999999987643322 111 223357
Q ss_pred EEEEeccCCCCHHHHHHHHHHHhhc
Q 008468 462 HVFTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 462 ~i~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
++++||++|.|+++++++|.+.+..
T Consensus 165 ~~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 165 IFASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred EEEeeCCCccCHHHHHHHHHHHHHH
Confidence 8999999999999999999998754
No 48
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.84 E-value=7.8e-21 Score=175.18 Aligned_cols=154 Identities=17% Similarity=0.173 Sum_probs=109.8
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcce-eccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAI-VTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~-vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
.+||+++|++|||||||+|+|++..+.. ..+..+++ .....+.+++ ..+.+|||||+..+... ...+
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--------~~~~ 75 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGAS--FMTKTVQYQNELHKFLIWDTAGLERFRAL--------APMY 75 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEE--EEEEEEEETTEEEEEEEEEECCSGGGGGG--------THHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEE--EEEEEEEECCeEEEEEEEcCCCchhhhcc--------cHhh
Confidence 4899999999999999999999987421 12233333 3334445554 67889999998655433 2345
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVT 469 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAkt 469 (564)
+..+|++++|+|++++.+..+...|. .+... .....|+++|+||+|+.+...... ..+.. ...+++++||++
T Consensus 76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~---~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 152 (170)
T 1z0j_A 76 YRGSAAAIIVYDITKEETFSTLKNWVRELRQH---GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKN 152 (170)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTT
T ss_pred CcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh---CCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 88999999999999876666654443 33321 235789999999999976443322 22322 336799999999
Q ss_pred CCCHHHHHHHHHHHh
Q 008468 470 GQGIQDLETAIMKIV 484 (564)
Q Consensus 470 g~GI~eL~~~L~~~l 484 (564)
|.|+++++++|.+.+
T Consensus 153 ~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 153 AININELFIEISRRI 167 (170)
T ss_dssp TBSHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999998875
No 49
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=178.49 Aligned_cols=157 Identities=21% Similarity=0.205 Sum_probs=118.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..++|+|+|++|||||||+|+|++..+ ...+++|+.+.....+.+++. .+.+|||||..++.... ..+
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~ 82 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIR--------DNY 82 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHH--------HHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHH--------HHH
Confidence 458999999999999999999998874 466777777776677777774 68899999988765543 345
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHH-HHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhc-ccCCcEEEEeccC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELL-NRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVG-NSFNDHVFTCAVT 469 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l-~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~-~~~~~~i~iSAkt 469 (564)
+..+|++++|+|+++..++.....| ..+.... ...+.|+++|+||+|+........ ..+. ....+++++||++
T Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (206)
T 2bov_A 83 FRSGEGFLCVFSITEMESFAATADFREQILRVK--EDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKT 160 (206)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT--TCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTT
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCC
Confidence 7889999999999987666555433 2333321 124789999999999976443322 2222 2335799999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 008468 470 GQGIQDLETAIMKIVG 485 (564)
Q Consensus 470 g~GI~eL~~~L~~~l~ 485 (564)
|.|+++++++|.+.+.
T Consensus 161 g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 161 RANVDKVFFDLMREIR 176 (206)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998774
No 50
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.84 E-value=1.2e-20 Score=174.15 Aligned_cols=158 Identities=19% Similarity=0.244 Sum_probs=105.3
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|++|||||||+|+|++...... ..+.++.+.....+.+++ ..+.+|||||..++.... ...++.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------~~~~~~ 74 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHA-HEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWL-------QDHCLQ 74 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC---------------CHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCccc-ccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhh-------hhhhhc
Confidence 7999999999999999999998765433 334455667777777777 456799999997654321 123477
Q ss_pred cCcEEEEEecCCCCCChhHHHHH-HHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELL-NRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTGQ 471 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l-~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg~ 471 (564)
.+|++++|+|++++.++.....| ..+.... ...+.|+++|+||+|+.+...... +.+.. ...+++++||++|.
T Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (169)
T 3q85_A 75 TGDAFLIVFSVTDRRSFSKVPETLLRLRAGR--PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHH 152 (169)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--TTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHhcc--cCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCC
Confidence 89999999999987666655333 3333321 123789999999999975443332 22322 33589999999999
Q ss_pred CHHHHHHHHHHHhhc
Q 008468 472 GIQDLETAIMKIVGL 486 (564)
Q Consensus 472 GI~eL~~~L~~~l~~ 486 (564)
|++++++.+.+.+..
T Consensus 153 ~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 153 NTRELFEGAVRQIRL 167 (169)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987743
No 51
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.84 E-value=1.9e-20 Score=201.95 Aligned_cols=164 Identities=32% Similarity=0.461 Sum_probs=121.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhH----HHHhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDI----VEKIGVERSE 392 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~----ie~~~i~~~~ 392 (564)
..++|+|+|++|||||||+|+|++..+.+++++++||++.....+.++|..+.+|||||++..... .+.+...++.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 458999999999999999999999998889999999999999999999999999999998643322 2333334455
Q ss_pred hhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh----hhh----cc-cCCcEE
Q 008468 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW----NKV----GN-SFNDHV 463 (564)
Q Consensus 393 ~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~----~~l----~~-~~~~~i 463 (564)
.++..+|++++|+|++++.+.++......+.. .++|+++|+||+|+........ +.+ .. ...+++
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~------~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQDQRMAGLMER------RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI 332 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH------TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH------cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence 67889999999999999888776655444433 3689999999999976543111 111 11 246899
Q ss_pred EEeccCCCCHHHHHHHHHHHhhc
Q 008468 464 FTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 464 ~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
++||++|.|++++++.+.+.+..
T Consensus 333 ~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 333 FTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999987753
No 52
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.84 E-value=8e-21 Score=176.59 Aligned_cols=155 Identities=17% Similarity=0.177 Sum_probs=115.1
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+|+|++|||||||+|+|++..+. ....+.++.+.....+.+++ ..+.+|||||...+... ...++
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--------~~~~~ 84 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSYI 84 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--------SHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHH--------HHHHh
Confidence 389999999999999999999987753 34456667778777888877 46889999998665443 23457
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhh-cccCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKV-GNSFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l-~~~~~~~i~iSAktg 470 (564)
..+|++++|+|++++.++.....|. .+... ...+.|+++|+||+|+.+...... ..+ .....+++++||++|
T Consensus 85 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (179)
T 2y8e_A 85 RDSTVAVVVYDITNTNSFHQTSKWIDDVRTE---RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 161 (179)
T ss_dssp HTCSEEEEEEETTCHHHHHTHHHHHHHHHHH---HTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTT
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 8999999999999866655543332 23221 124689999999999975443322 222 223467999999999
Q ss_pred CCHHHHHHHHHHHh
Q 008468 471 QGIQDLETAIMKIV 484 (564)
Q Consensus 471 ~GI~eL~~~L~~~l 484 (564)
.|+++++++|.+.+
T Consensus 162 ~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 162 YNVKQLFRRVAAAL 175 (179)
T ss_dssp BSHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998865
No 53
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.84 E-value=1.4e-20 Score=177.00 Aligned_cols=153 Identities=16% Similarity=0.214 Sum_probs=110.6
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+.+||+++|.+|||||||+|+|++.++.......+.+ ...+.+++..+.+|||||..++... ...++
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 86 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN----VEEIVINNTRFLMWDIGGQESLRSS--------WNTYY 86 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSS----CEEEEETTEEEEEEEESSSGGGTCG--------GGGGG
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCcee----eEEEEECCEEEEEEECCCCHhHHHH--------HHHHh
Confidence 45689999999999999999999998864444444433 2345668899999999998665433 23558
Q ss_pred hcCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhh-----cccCCcEEEEec
Q 008468 396 LGADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKV-----GNSFNDHVFTCA 467 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l-----~~~~~~~i~iSA 467 (564)
..+|++++|+|++++.++.+.. .+..+.... ...+.|+++|+||+|+........ +.+ .....+++++||
T Consensus 87 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~--~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 164 (181)
T 2h17_A 87 TNTEFVIVVVDSTDRERISVTREELYKMLAHE--DLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA 164 (181)
T ss_dssp TTCCEEEEEEETTCTTTHHHHHHHHHHHHTCG--GGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhCh--hhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccC
Confidence 8999999999999987777653 333343321 124789999999999976433222 111 112236899999
Q ss_pred cCCCCHHHHHHHHHH
Q 008468 468 VTGQGIQDLETAIMK 482 (564)
Q Consensus 468 ktg~GI~eL~~~L~~ 482 (564)
++|.|+++++++|.+
T Consensus 165 ~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 165 LTGEGLCQGLEWMMS 179 (181)
T ss_dssp TTTBTHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHh
Confidence 999999999999875
No 54
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.84 E-value=7.3e-21 Score=175.36 Aligned_cols=157 Identities=20% Similarity=0.223 Sum_probs=110.5
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+++|++|||||||+|+|++..+. ....++++.+.....+.+++ ..+.+|||||...+... ...++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~~ 73 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI--------TTAYY 73 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC-C-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC--------CHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhh--------HHHHh
Confidence 379999999999999999999988753 34456666666666777776 46789999997654432 23457
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcc-cCCcEEEEeccCCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGN-SFNDHVFTCAVTGQ 471 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~-~~~~~i~iSAktg~ 471 (564)
..+|++++|+|++++.++.+...|. .+... ...+.|+++|+||+|+........ +.+.. ...+++++||++|.
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 150 (170)
T 1g16_A 74 RGAMGIILVYDITDERTFTNIKQWFKTVNEH---ANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDD 150 (170)
T ss_dssp TTEEEEEEEEETTCHHHHHTHHHHHHHHHHH---SCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTB
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 8999999999999876665554333 23322 234789999999999943322211 23322 23589999999999
Q ss_pred CHHHHHHHHHHHhhc
Q 008468 472 GIQDLETAIMKIVGL 486 (564)
Q Consensus 472 GI~eL~~~L~~~l~~ 486 (564)
|+++++++|.+.+..
T Consensus 151 gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 151 NVNEIFFTLAKLIQE 165 (170)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988753
No 55
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.84 E-value=1.2e-20 Score=176.06 Aligned_cols=152 Identities=17% Similarity=0.166 Sum_probs=110.2
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+++|++|||||||+|+|++..+.. +.+|+.+.....+.+++. .+.+|||||... ..++
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------------~~~~ 70 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV---LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-------------AKFS 70 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC---CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-------------HHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC---cCCCcceeEEEEEEECCEEEEEEEEECCCCch-------------hHHH
Confidence 4899999999999999999999987642 334444444566677764 568899999865 1347
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCC--CCcchh---hhhccc--CCcEEEEec
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAP--SASNEW---NKVGNS--FNDHVFTCA 467 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~--~~~~~~---~~l~~~--~~~~i~iSA 467 (564)
+.+|++++|+|++++.++.+...|.. +.........+.|+++|+||+|+.. ...... +++... ..+++++||
T Consensus 71 ~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 150 (178)
T 2iwr_A 71 GWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXA 150 (178)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBT
T ss_pred HhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEec
Confidence 88999999999999877777655432 3322222235789999999999942 222221 233322 357999999
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 008468 468 VTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 468 ktg~GI~eL~~~L~~~l~ 485 (564)
++|.|++++++.|.+.+.
T Consensus 151 ~~~~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 151 TYGLNVDRVFQEVAQKVV 168 (178)
T ss_dssp TTTBTHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHH
Confidence 999999999999988763
No 56
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.84 E-value=1e-20 Score=181.37 Aligned_cols=154 Identities=17% Similarity=0.209 Sum_probs=104.8
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+.++|+++|++|||||||+|+|.+..+....+..+. ....+.+++..+.+|||||+..+... ...++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~----~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~ 90 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHP----TSEELTIAGMTFTTFDLGGHIQARRV--------WKNYL 90 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCC----SCEEEEETTEEEEEEEECC----CCG--------GGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCc----eeEEEEECCEEEEEEECCCcHhhHHH--------HHHHH
Confidence 3458999999999999999999998775432222222 23566788899999999998765433 23458
Q ss_pred hcCcEEEEEecCCCCCChhHHHH-HHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhcc----------------
Q 008468 396 LGADVIIMTVSAVDGWTSEDSEL-LNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGN---------------- 457 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~-l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~---------------- 457 (564)
+.+|++++|+|++++.++.+... +..+.... ...+.|+++|+||+|+......+. .++..
T Consensus 91 ~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~--~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (198)
T 1f6b_A 91 PAINGIVFLVDCADHERLLESKEELDSLMTDE--TIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKEL 168 (198)
T ss_dssp GGCSEEEEEEETTCGGGHHHHHHHHHHHHTCG--GGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTC
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHhCc--ccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccc
Confidence 89999999999998877665533 33333321 124789999999999976332222 11111
Q ss_pred --cCCcEEEEeccCCCCHHHHHHHHHHH
Q 008468 458 --SFNDHVFTCAVTGQGIQDLETAIMKI 483 (564)
Q Consensus 458 --~~~~~i~iSAktg~GI~eL~~~L~~~ 483 (564)
...+++++||++|.|+++++++|.+.
T Consensus 169 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 169 NARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp CSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred cCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 12468999999999999999999764
No 57
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.84 E-value=2e-20 Score=178.03 Aligned_cols=153 Identities=16% Similarity=0.184 Sum_probs=109.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+.+||+++|++|||||||+|+|.+..+....+ |.+.....+.+++..+.+|||||+..+... ...+++
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~ 89 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQP----TWHPTSEELAIGNIKFTTFDLGGHIQARRL--------WKDYFP 89 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCCC----CCSCEEEEEEETTEEEEEEECCCSGGGTTS--------GGGGCT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcccc----CCCCCeEEEEECCEEEEEEECCCCHHHHHH--------HHHHHh
Confidence 44899999999999999999999987543222 222335667788999999999998765432 234578
Q ss_pred cCcEEEEEecCCCCCChhHHHH-HHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhcc-------------cCCc
Q 008468 397 GADVIIMTVSAVDGWTSEDSEL-LNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGN-------------SFND 461 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~-l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~-------------~~~~ 461 (564)
.+|++++|+|++++.++.+... +..+.... ...+.|+++|+||+|+......+. .+... ...+
T Consensus 90 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (190)
T 1m2o_B 90 EVNGIVFLVDAADPERFDEARVELDALFNIA--ELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVE 167 (190)
T ss_dssp TCCEEEEEEETTCGGGHHHHHHHHHHHHTCG--GGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEE
T ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHcch--hhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEE
Confidence 9999999999999877766543 33333321 124789999999999976332222 22111 1246
Q ss_pred EEEEeccCCCCHHHHHHHHHHH
Q 008468 462 HVFTCAVTGQGIQDLETAIMKI 483 (564)
Q Consensus 462 ~i~iSAktg~GI~eL~~~L~~~ 483 (564)
++++||++|.|+++++++|.+.
T Consensus 168 ~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 168 VFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp EEECBTTTTBSHHHHHHHHHTT
T ss_pred EEEeECCcCCCHHHHHHHHHhh
Confidence 8999999999999999998753
No 58
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.84 E-value=2.4e-20 Score=174.95 Aligned_cols=157 Identities=22% Similarity=0.219 Sum_probs=115.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCee--eEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVP--VTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~--i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+||+|+|++|||||||+|+|++..+ ...+.+++.+.....+.+++.. +.+|||||..++.... ..+
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~ 86 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIF--VDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMR--------EQY 86 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSH--------HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHH--------HHH
Confidence 348999999999999999999998754 3556566655556777777765 4569999987654432 345
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEecc-
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAV- 468 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAk- 468 (564)
++.+|++++|+|++++.++.....|.. +.... ...+.|+++|+||+|+........ +.+.. ...+++++||+
T Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 164 (183)
T 3kkq_A 87 MRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK--DRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKD 164 (183)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH--TSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSS
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCC
Confidence 788999999999998766665544433 32221 234789999999999976444332 22222 23689999999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 008468 469 TGQGIQDLETAIMKIVG 485 (564)
Q Consensus 469 tg~GI~eL~~~L~~~l~ 485 (564)
+|.|++++++.|.+.+.
T Consensus 165 ~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 165 PPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp SCBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998764
No 59
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.84 E-value=1.4e-20 Score=189.81 Aligned_cols=161 Identities=23% Similarity=0.216 Sum_probs=120.1
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhc
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALG 397 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~ 397 (564)
.++|+++|++|||||||+|+|++... .+++.+++|.+.....+.+++..+.+|||||+.++........+.+.......
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 37999999999999999999999876 68899999999999999999999999999999865432111112222222378
Q ss_pred CcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcch--hhhhcc-cCCcEEEEeccCCCCHH
Q 008468 398 ADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE--WNKVGN-SFNDHVFTCAVTGQGIQ 474 (564)
Q Consensus 398 aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~--~~~l~~-~~~~~i~iSAktg~GI~ 474 (564)
+|++++|+|+++. ......+..+... ...|+++|+||+|+....... .+.+.+ ...+++++||++|.|++
T Consensus 82 ~d~vi~v~D~~~~--~~~~~~~~~~~~~-----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~ 154 (271)
T 3k53_A 82 ADVIVDIVDSTCL--MRNLFLTLELFEM-----EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVE 154 (271)
T ss_dssp CSEEEEEEEGGGH--HHHHHHHHHHHHT-----TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHH
T ss_pred CcEEEEEecCCcc--hhhHHHHHHHHhc-----CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHH
Confidence 9999999999874 2333344444432 128999999999975432211 122322 23689999999999999
Q ss_pred HHHHHHHHHhhc
Q 008468 475 DLETAIMKIVGL 486 (564)
Q Consensus 475 eL~~~L~~~l~~ 486 (564)
++++.+.+.+..
T Consensus 155 ~l~~~i~~~~~~ 166 (271)
T 3k53_A 155 ELKRMIALMAEG 166 (271)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999998754
No 60
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.84 E-value=2.3e-20 Score=177.93 Aligned_cols=156 Identities=19% Similarity=0.213 Sum_probs=109.5
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
+..+||+|+|++|||||||+|+|++.++. ...| |.+.....+.+++..+.+|||||..++.... ..++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~~ 94 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNICFTVWDVGGQDKIRPLW--------RHYF 94 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE--EEEE--ETTEEEEEEEETTEEEEEEECC-----CTTH--------HHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc--ccCC--cCceeEEEEEECCEEEEEEECCCCHhHHHHH--------HHHh
Confidence 45699999999999999999999987753 3222 3335556677789999999999987654332 3457
Q ss_pred hcCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhc-----ccCCcEEEEec
Q 008468 396 LGADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVG-----NSFNDHVFTCA 467 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~-----~~~~~~i~iSA 467 (564)
..+|++++|+|++++.++.... .+..+.... ...+.|+++|+||+|+........ +.+. ....+++++||
T Consensus 95 ~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~--~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA 172 (192)
T 2b6h_A 95 QNTQGLIFVVDSNDRERVQESADELQKMLQED--ELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCA 172 (192)
T ss_dssp HTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG--GGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHhccc--ccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcC
Confidence 8999999999999887666543 333333321 124689999999999976533221 1111 12236899999
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 008468 468 VTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 468 ktg~GI~eL~~~L~~~l~ 485 (564)
++|.|+++++++|.+.+.
T Consensus 173 ~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 173 TQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp TTTBTHHHHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHh
Confidence 999999999999998764
No 61
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.84 E-value=2.1e-20 Score=174.94 Aligned_cols=157 Identities=21% Similarity=0.205 Sum_probs=117.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+||+|+|++|||||||+|+|++..+ ...+.+|+.+.....+.+++. .+.+|||||..++.... ..+
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~ 86 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIR--------DNY 86 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHH--------HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHH--------HHH
Confidence 348999999999999999999998874 456677777766666777774 67899999988765443 345
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHH-HHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhc-ccCCcEEEEeccC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELL-NRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVG-NSFNDHVFTCAVT 469 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l-~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~-~~~~~~i~iSAkt 469 (564)
+..+|++++|+|++++.++.....| ..+.... ...+.|+++|+||+|+........ .++. ....+++++||++
T Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (187)
T 2a9k_A 87 FRSGEGFLCVFSITEMESFAATADFREQILRVK--EDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKT 164 (187)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH--CCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCC
Confidence 7889999999999987665554333 3333321 124689999999999976433322 2222 2345799999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 008468 470 GQGIQDLETAIMKIVG 485 (564)
Q Consensus 470 g~GI~eL~~~L~~~l~ 485 (564)
|.|+++++++|.+.+.
T Consensus 165 ~~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 165 RANVDKVFFDLMREIR 180 (187)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998774
No 62
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.84 E-value=3.3e-20 Score=175.76 Aligned_cols=159 Identities=19% Similarity=0.238 Sum_probs=106.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC-cceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchh---HHHHhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE-RAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDD---IVEKIGVERSE 392 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~-~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~---~ie~~~i~~~~ 392 (564)
..++|+|+|++|||||||+|+|++.. ...+...+++|.+..... + +..+.+|||||+.+... ..+.+. ....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~~~l~Dt~G~~~~~~~~~~~~~~~-~~~~ 97 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--I-NDELHFVDVPGYGFAKVSKSEREAWG-RMIE 97 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--E-TTTEEEEECCCBCCCSSCHHHHHHHH-HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--E-CCcEEEEECCCCCccccCHHHHHHHH-HHHH
Confidence 45899999999999999999999986 344566777777655433 3 34799999999764321 111111 1122
Q ss_pred hhhhcC---cEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hh----hcc-cCCcE
Q 008468 393 AVALGA---DVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NK----VGN-SFNDH 462 (564)
Q Consensus 393 ~~l~~a---D~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~----l~~-~~~~~ 462 (564)
.++..+ |++++|+|++++.+..+...+..+.. .+.|+++|+||+|+.+...... ++ +.. ...++
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY------YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence 334555 99999999999888887766655543 3689999999999987654332 22 322 24579
Q ss_pred EEEeccCCCCHHHHHHHHHHHhh
Q 008468 463 VFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 463 i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
+++||++|.|+++++++|.+.+.
T Consensus 172 ~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 172 ILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEEccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999988763
No 63
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.84 E-value=2.7e-20 Score=176.17 Aligned_cols=154 Identities=21% Similarity=0.204 Sum_probs=111.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC-------------------------------
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG------------------------------- 365 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g------------------------------- 365 (564)
..+||+|+|++|||||||+|+|++..+. ....+.++.+.....+.+++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFH-ENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCC-CCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 4589999999999999999999998753 22334444566666666655
Q ss_pred --------eeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEE
Q 008468 366 --------VPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMI 436 (564)
Q Consensus 366 --------~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvI 436 (564)
..+.||||||..++... ...++..+|++++|+|++++.++.+...|. .+... .+.|++
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~-----~~~pii 151 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASI--------VPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS-----SNYIII 151 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTT--------HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-----SCCEEE
T ss_pred cccCccceeEEEEEECCCcHHHHHH--------HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh-----CCCcEE
Confidence 67899999998665443 334588999999999999876666554332 33322 138999
Q ss_pred EEEecCCCCCCCcchh---hhhc-ccCCcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 437 LVINKIDCAPSASNEW---NKVG-NSFNDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 437 vV~NK~DL~~~~~~~~---~~l~-~~~~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
+|+||+|+ ....... .++. ....+++++||++|.|+++++++|.+.+.
T Consensus 152 lv~NK~D~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 152 LVANKIDK-NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp EEEECTTC-C-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECCCc-ccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 99999993 3222221 2222 23458999999999999999999988764
No 64
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.84 E-value=1e-20 Score=174.12 Aligned_cols=156 Identities=19% Similarity=0.201 Sum_probs=109.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEEC--CeeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC--GVPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~--g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+||+++|++|||||||+|+|++..+.. ...+..+.+.....+.++ +..+.+|||||...+... ...+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~ 75 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHE-FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL--------APMY 75 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--------HHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhh--------hHHh
Confidence 34899999999999999999999876532 112223333334444555 457889999998765443 2345
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHH-HHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhc-ccCCcEEEEeccC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELL-NRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVG-NSFNDHVFTCAVT 469 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l-~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~-~~~~~~i~iSAkt 469 (564)
+..+|++++|+|++++.+..+...| ..+... ...+.|+++|+||+|+........ ..+. ....+++++||++
T Consensus 76 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (170)
T 1r2q_A 76 YRGAQAAIVVYDITNEESFARAKNWVKELQRQ---ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKT 152 (170)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 8899999999999987666554433 233322 235789999999999965433322 2222 2345799999999
Q ss_pred CCCHHHHHHHHHHHh
Q 008468 470 GQGIQDLETAIMKIV 484 (564)
Q Consensus 470 g~GI~eL~~~L~~~l 484 (564)
|.|+++++++|.+.+
T Consensus 153 g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 153 SMNVNEIFMAIAKKL 167 (170)
T ss_dssp CTTHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998865
No 65
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.84 E-value=2.1e-20 Score=175.03 Aligned_cols=156 Identities=15% Similarity=0.201 Sum_probs=109.5
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
++.++|+++|++|||||||+|+|++.++....+..+ .....+.+++..+.+|||||...+... ...++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 83 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIG----FNVETLSYKNLKLNVWDLGGQTSIRPY--------WRCYY 83 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTT----CCEEEEEETTEEEEEEEEC----CCTT--------GGGTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCc----cceEEEEECCEEEEEEECCCCHhHHHH--------HHHHh
Confidence 457999999999999999999999877533333233 233456678899999999998765433 23457
Q ss_pred hcCcEEEEEecCCCCCChhHHHH-HHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhc-----ccCCcEEEEec
Q 008468 396 LGADVIIMTVSAVDGWTSEDSEL-LNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVG-----NSFNDHVFTCA 467 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~-l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~-----~~~~~~i~iSA 467 (564)
..+|++++|+|++++.+..+... +..+... ....+.|+++|+||+|+.+...... +.+. ....+++++||
T Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 161 (183)
T 1moz_A 84 ADTAAVIFVVDSTDKDRMSTASKELHLMLQE--EELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSA 161 (183)
T ss_dssp TTEEEEEEEEETTCTTTHHHHHHHHHHHTTS--STTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBG
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHcC--hhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccC
Confidence 89999999999999877766533 3333322 1135789999999999976533222 1211 11236899999
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 008468 468 VTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 468 ktg~GI~eL~~~L~~~l~ 485 (564)
++|.|+++++++|.+.+.
T Consensus 162 ~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 162 IKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp GGTBTHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 999999999999988764
No 66
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.1e-20 Score=179.60 Aligned_cols=159 Identities=14% Similarity=0.092 Sum_probs=112.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcc-eeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERA-IVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~-~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
..+||+|+|++|||||||+|+|++..+. ......+++.......+...+..+.+|||||..++... ...++
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 93 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSL--------APMYY 93 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGG--------THHHH
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhh--------hHHhh
Confidence 3489999999999999999999988743 23344454444333333334567899999998665433 23458
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhc-ccCCcEEEEeccCCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVG-NSFNDHVFTCAVTGQ 471 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~-~~~~~~i~iSAktg~ 471 (564)
..+|++++|+|++++.++.....|...... ....+.|+++|+||+|+.+...... .++. ....+++++||++|.
T Consensus 94 ~~~d~iilV~d~~~~~s~~~~~~~~~~i~~--~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (192)
T 2fg5_A 94 RGSAAAVIVYDITKQDSFYTLKKWVKELKE--HGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAI 171 (192)
T ss_dssp TTCSEEEEEEETTCTHHHHHHHHHHHHHHH--HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTB
T ss_pred ccCCEEEEEEeCCCHHHHHHHHHHHHHHHH--hCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCc
Confidence 899999999999987766665444332222 1234789999999999975333222 2333 234679999999999
Q ss_pred CHHHHHHHHHHHhh
Q 008468 472 GIQDLETAIMKIVG 485 (564)
Q Consensus 472 GI~eL~~~L~~~l~ 485 (564)
|+++++++|.+.+.
T Consensus 172 gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 172 NIEELFQGISRQIP 185 (192)
T ss_dssp SHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998764
No 67
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.84 E-value=1.5e-20 Score=178.07 Aligned_cols=158 Identities=16% Similarity=0.173 Sum_probs=111.4
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
.++.+||+|+|++|||||||+|+|++..+. ..+..|. ......+..++..+.+|||||..++... ...+
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~ 87 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFN--EDMIPTV-GFNMRKITKGNVTIKLWDIGGQPRFRSM--------WERY 87 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCC--CSCCCCC-SEEEEEEEETTEEEEEEEECCSHHHHTT--------HHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCC--CccCCCC-ceeEEEEEeCCEEEEEEECCCCHhHHHH--------HHHH
Confidence 455699999999999999999999987753 2222222 2222346678899999999998654333 2345
Q ss_pred hhcCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhc-----ccCCcEEEEe
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVG-----NSFNDHVFTC 466 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~-----~~~~~~i~iS 466 (564)
+..+|++++|+|++++.++.... .+..+.... ...+.|+++|+||+|+........ +.+. ....+++++|
T Consensus 88 ~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~--~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 165 (188)
T 1zd9_A 88 CRGVSAIVYMVDAADQEKIEASKNELHNLLDKP--QLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSIS 165 (188)
T ss_dssp HTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG--GGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred HccCCEEEEEEECCCHHHHHHHHHHHHHHHhCc--ccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEE
Confidence 78999999999999876666543 333333221 124789999999999976533221 2111 1224689999
Q ss_pred ccCCCCHHHHHHHHHHHhh
Q 008468 467 AVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 467 Aktg~GI~eL~~~L~~~l~ 485 (564)
|++|.|+++++++|.+.+.
T Consensus 166 A~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 166 CKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp TTTCTTHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999988664
No 68
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=1.8e-20 Score=180.54 Aligned_cols=158 Identities=18% Similarity=0.133 Sum_probs=116.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+||+|+|++|||||||+|+|++..+. ....+.++.+.....+.+++. .+.+|||||...+... ...+
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--------~~~~ 95 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSI--------TQSY 95 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--------HGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH--------HHHH
Confidence 3489999999999999999999988753 344455667777777888774 6789999998665433 2355
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhc-ccCCcEEEEeccCC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVG-NSFNDHVFTCAVTG 470 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~-~~~~~~i~iSAktg 470 (564)
++.+|++++|+|++++.++.....|...... ....+.|+++|+||+|+........ +.+. ....+++++||++|
T Consensus 96 ~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~--~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g 173 (201)
T 2ew1_A 96 YRSANALILTYDITCEESFRCLPEWLREIEQ--YASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKES 173 (201)
T ss_dssp STTCSEEEEEEETTCHHHHHTHHHHHHHHHH--HSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTC
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHH--hcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 8899999999999987666655444332221 1234689999999999975433322 2222 23367999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 008468 471 QGIQDLETAIMKIVG 485 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~ 485 (564)
.|+++++++|.+.+.
T Consensus 174 ~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 174 DNVEKLFLDLACRLI 188 (201)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988764
No 69
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.83 E-value=2.5e-20 Score=173.29 Aligned_cols=155 Identities=19% Similarity=0.199 Sum_probs=111.6
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccC-eeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAG-TTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~g-tT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
.+||+|+|++|||||||+|+|++..+. ..+++ ++.+.....+.+++ ..+.+|||||..++... ...+
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~ 84 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV--------TRSY 84 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC--SSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHH--------HHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhh--------HHHH
Confidence 489999999999999999999988753 33333 23344444555655 56889999998765543 2345
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhc-ccCCcEEEEeccC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVG-NSFNDHVFTCAVT 469 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~-~~~~~~i~iSAkt 469 (564)
+..+|++++|+|++++.+..+...|.. +... ...+.|+++|+||+|+........ .++. ....+++++||++
T Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (179)
T 1z0f_A 85 YRGAAGALMVYDITRRSTYNHLSSWLTDARNL---TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKT 161 (179)
T ss_dssp HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHH---SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred hccCCEEEEEEeCcCHHHHHHHHHHHHHHHHh---cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 889999999999998766665544332 3222 234789999999999975433322 2332 2346799999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 008468 470 GQGIQDLETAIMKIVG 485 (564)
Q Consensus 470 g~GI~eL~~~L~~~l~ 485 (564)
|.|+++++++|.+.+.
T Consensus 162 ~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 162 GENVEDAFLEAAKKIY 177 (179)
T ss_dssp CTTHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999988763
No 70
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.83 E-value=2e-20 Score=179.57 Aligned_cols=158 Identities=14% Similarity=0.125 Sum_probs=111.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+||+|+|++|||||||+|+|++..+. ....+.++.+.....+.+++ ..+.+|||||..++... ...+
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~ 98 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFS-ERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTI--------TQSY 98 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCGGGHHH--------HHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCC-CCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHH--------HHHH
Confidence 3489999999999999999999988753 12233344566667777777 57889999998766543 2345
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCC-cEEEEecc
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFN-DHVFTCAV 468 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~-~~i~iSAk 468 (564)
++.+|++|+|+|++++.++.+...|. .+... ...+.|+++|+||+|+........ +++.. ... +++++||+
T Consensus 99 ~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~---~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 175 (201)
T 2hup_A 99 YRSANGAILAYDITKRSSFLSVPHWIEDVRKY---AGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAK 175 (201)
T ss_dssp HTTCSEEEEEEETTBHHHHHTHHHHHHHHHHH---SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTT
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCC
Confidence 88999999999999876666554333 33322 135789999999999976433222 23332 234 78999999
Q ss_pred CCCCHHHHHHHHHHHhhc
Q 008468 469 TGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 469 tg~GI~eL~~~L~~~l~~ 486 (564)
+|.|+++++++|.+.+..
T Consensus 176 ~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 176 DSSNVEEAFLRVATELIM 193 (201)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988753
No 71
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.83 E-value=1.5e-20 Score=178.70 Aligned_cols=158 Identities=19% Similarity=0.173 Sum_probs=116.6
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCee--eEEEeCCCCCCchhHHHHhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVP--VTLLDTAGIRETDDIVEKIGVERSEA 393 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~--i~LiDTpG~~~~~~~ie~~~i~~~~~ 393 (564)
...+||+++|++|||||||+|+|++..+ ...+.+|+.+.....+.+++.. +.+|||||..++... ...
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~ 90 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRL--------RPL 90 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTT--------GGG
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHH--------hHh
Confidence 3458999999999999999999999874 4566667666666677777754 589999998665433 234
Q ss_pred hhhcCcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCC--cchh---hhhcc-cCCc-EEEE
Q 008468 394 VALGADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSA--SNEW---NKVGN-SFND-HVFT 465 (564)
Q Consensus 394 ~l~~aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~--~~~~---~~l~~-~~~~-~i~i 465 (564)
++..+|++++|+|++++.++.+. ..|...... ...+.|+++|+||+|+.... .... +++.. .... ++++
T Consensus 91 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
T 3reg_A 91 SYADSDVVLLCFAVNNRTSFDNISTKWEPEIKH---YIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEA 167 (194)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH---HCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEEC
T ss_pred hccCCcEEEEEEECCCHHHHHHHHHHHHHHHHH---hCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEe
Confidence 58899999999999987766664 334433322 13468999999999997532 1111 22222 2234 9999
Q ss_pred eccCCCCHHHHHHHHHHHhhc
Q 008468 466 CAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 466 SAktg~GI~eL~~~L~~~l~~ 486 (564)
||++|.|++++++.|.+.+..
T Consensus 168 Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 168 SSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp BTTTTBSHHHHHHHHHHHHHC
T ss_pred ecCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999998754
No 72
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.83 E-value=1.9e-20 Score=172.25 Aligned_cols=155 Identities=18% Similarity=0.197 Sum_probs=111.2
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+++|++|||||||+|+|++..+. ....+.++.+.....+.+++ ..+.+|||||...+... ...++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~~ 73 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFA-ENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASL--------APXYY 73 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--------HHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhh--------hhhhh
Confidence 379999999999999999999988753 22334444555555666665 46889999998765443 23458
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCC---cchh---hhhcc-cCCcEEEEec
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSA---SNEW---NKVGN-SFNDHVFTCA 467 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~---~~~~---~~l~~-~~~~~i~iSA 467 (564)
..+|++++|+|++++.+..+...|. .+... ...+.|+++|+||+|+.... .... +.+.. ...+++++||
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa 150 (170)
T 1ek0_A 74 RNAQAALVVYDVTKPQSFIKARHWVKELHEQ---ASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSA 150 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCT
T ss_pred ccCcEEEEEEecCChHHHHHHHHHHHHHHHh---cCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence 8999999999999876666554332 33322 23578999999999997542 2211 22222 3357999999
Q ss_pred cCCCCHHHHHHHHHHHh
Q 008468 468 VTGQGIQDLETAIMKIV 484 (564)
Q Consensus 468 ktg~GI~eL~~~L~~~l 484 (564)
++|.|+++++++|.+.+
T Consensus 151 ~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 151 KTGENVNDVFLGIGEKI 167 (170)
T ss_dssp TTCTTHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998754
No 73
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.83 E-value=3.1e-20 Score=177.71 Aligned_cols=160 Identities=18% Similarity=0.223 Sum_probs=116.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+||+|+|++|||||||+|+|++..... ...++++.+.....+.+++. .+.+|||+|...+...+ ...+
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~-------~~~~ 93 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDS-AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWL-------RDHC 93 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCG-GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHH-------HHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCc-cCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhh-------HHHh
Confidence 44899999999999999999998755432 45566777777777778775 46789999997654321 1245
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVT 469 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAkt 469 (564)
++.+|++++|+|++++.++.....|. .+.... ...+.|+++|+||+|+........ +.+.. ...+++++||++
T Consensus 94 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~ 171 (195)
T 3cbq_A 94 LQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGR--PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAAL 171 (195)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--TTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCC
Confidence 78899999999999877666554333 333221 124789999999999976543322 33332 235799999999
Q ss_pred CCCHHHHHHHHHHHhhc
Q 008468 470 GQGIQDLETAIMKIVGL 486 (564)
Q Consensus 470 g~GI~eL~~~L~~~l~~ 486 (564)
|.|++++++.|.+.+..
T Consensus 172 ~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 172 HHNTRELFEGAVRQIRL 188 (195)
T ss_dssp TBSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988753
No 74
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.83 E-value=2.5e-21 Score=195.98 Aligned_cols=160 Identities=24% Similarity=0.278 Sum_probs=120.1
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHH----Hhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVE----KIGVERSEA 393 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie----~~~i~~~~~ 393 (564)
.++|+++|.+|||||||+|+|++.. ..+++++++|.+.....+.+++..+.+|||||+.++..... ...+.+...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 4899999999999999999999987 47899999999999999999999999999999987542111 111233333
Q ss_pred hhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcc-cCCcEEEEeccCC
Q 008468 394 VALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 394 ~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~-~~~~~i~iSAktg 470 (564)
....+|++++|+|+++. .....+..++... +.|+++|+||+|+........ +.+.+ ...+++++||++|
T Consensus 82 ~~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~------~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g 153 (274)
T 3i8s_A 82 LSGDADLLINVVDASNL--ERNLYLTLQLLEL------GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRG 153 (274)
T ss_dssp HHTCCSEEEEEEEGGGH--HHHHHHHHHHHHH------TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGG
T ss_pred hhcCCCEEEEEecCCCh--HHHHHHHHHHHhc------CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 34799999999999872 2223333444432 689999999999865433221 33332 2368999999999
Q ss_pred CCHHHHHHHHHHHhhc
Q 008468 471 QGIQDLETAIMKIVGL 486 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~~ 486 (564)
.|++++++.|.+.+..
T Consensus 154 ~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 154 RGIEALKLAIDRYKAN 169 (274)
T ss_dssp HHHHHHHHHHHTCCCC
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999887643
No 75
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.83 E-value=3.1e-20 Score=175.47 Aligned_cols=157 Identities=17% Similarity=0.192 Sum_probs=113.9
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
++.+||+++|++|||||||+|+|.+.++. ...| |.......+.+++..+.+|||||+.++... ...++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--------~~~~~ 87 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV--TTVP--TVGVNLETLQYKNISFEVWDLGGQTGVRPY--------WRCYF 87 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCE--EECS--STTCCEEEEEETTEEEEEEEECCSSSSCCC--------CSSSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCC--CcCC--CCceEEEEEEECCEEEEEEECCCCHhHHHH--------HHHHh
Confidence 35699999999999999999999987753 2233 222334456778899999999998765433 23457
Q ss_pred hcCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhc-----ccCCcEEEEec
Q 008468 396 LGADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVG-----NSFNDHVFTCA 467 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~-----~~~~~~i~iSA 467 (564)
+.+|++++|+|++++.+..+.. .+..+... ....+.|+++|+||+|+........ +.+. ....+++++||
T Consensus 88 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 165 (189)
T 2x77_A 88 SDTDAVIYVVDSTDRDRMGVAKHELYALLDE--DELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSS 165 (189)
T ss_dssp TTCCEEEEEEETTCCTTHHHHHHHHHHHHTC--STTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCT
T ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHHHhh--hhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccC
Confidence 8999999999999987776553 33333332 1224789999999999976543222 1111 12236899999
Q ss_pred cCCCCHHHHHHHHHHHhhc
Q 008468 468 VTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 468 ktg~GI~eL~~~L~~~l~~ 486 (564)
++|.|+++++++|.+.+..
T Consensus 166 ~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 166 KTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHh
Confidence 9999999999999988754
No 76
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.83 E-value=8.2e-20 Score=172.35 Aligned_cols=159 Identities=25% Similarity=0.243 Sum_probs=114.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCch---hHHHHhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD---DIVEKIGVERSEA 393 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~---~~ie~~~i~~~~~ 393 (564)
..++|+|+|++|||||||+|+|++.....+.+.+++|.+..... .+..+.+|||||+.... ...+.+ ......
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~-~~~~~~ 97 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL---VNSKYYFVDLPGYGYAKVSKKERMLW-KRLVED 97 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE---ETTTEEEEECCCBSSSCCCHHHHHHH-HHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE---ECCcEEEEECCCCccccCChhhHHHH-HHHHHH
Confidence 34799999999999999999999998777777888887665433 24578999999975321 001111 011122
Q ss_pred hhh---cCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-----hhhcc--cCCcEE
Q 008468 394 VAL---GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-----NKVGN--SFNDHV 463 (564)
Q Consensus 394 ~l~---~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-----~~l~~--~~~~~i 463 (564)
++. .+|++++|+|++++.+..+...+.++... +.|+++|+||+|+.+...... .++.. ...+++
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTII 171 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEE
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceE
Confidence 333 45999999999988777766665555442 689999999999986543322 12222 235899
Q ss_pred EEeccCCCCHHHHHHHHHHHhh
Q 008468 464 FTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 464 ~iSAktg~GI~eL~~~L~~~l~ 485 (564)
++||++|.|+++++++|.+.+.
T Consensus 172 ~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 172 PTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHC
T ss_pred EEecCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999998774
No 77
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.83 E-value=1.3e-20 Score=173.92 Aligned_cols=156 Identities=17% Similarity=0.181 Sum_probs=110.1
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+++|++|||||||+|+|++..+. ....+.++.+.....+.+++. .+.+|||||..++.... ..++
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~~ 76 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFN-DKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALG--------PIYY 76 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCC-SSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC---------------CCSS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCC-cCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhH--------HHHh
Confidence 489999999999999999999988643 234455566666666777664 57889999986654332 2457
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
..+|++++|+|++++.+..+...|. .+.... ..+.|+++|+||+|+.+...... +++.. ...+++++||++|
T Consensus 77 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (170)
T 1z08_A 77 RDSNGAILVYDITDEDSFQKVKNWVKELRKML---GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQN 153 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH---GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTT
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc---CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCC
Confidence 8999999999999876665554332 222211 23689999999999976433322 23332 2357999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 008468 471 QGIQDLETAIMKIVG 485 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~ 485 (564)
.|+++++++|.+.+.
T Consensus 154 ~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 154 KGIEELFLDLCKRMI 168 (170)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999988764
No 78
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.83 E-value=3.2e-20 Score=177.98 Aligned_cols=156 Identities=21% Similarity=0.231 Sum_probs=116.5
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+|+|++|||||||+|+|++..+. ....++++.+.....+.+++. .+.+|||||...+... ...++
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 78 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYT-NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI--------TSSYY 78 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC-TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCC--------CGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHH--------HHHhc
Confidence 489999999999999999999998753 234456666666667777764 6889999998765433 23458
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhc-ccCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVG-NSFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~-~~~~~~i~iSAktg 470 (564)
..+|++++|+|++++.++.+...|.. +... ...+.|+++|+||+|+........ ..+. ....+++++||++|
T Consensus 79 ~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 155 (206)
T 2bcg_Y 79 RGSHGIIIVYDVTDQESFNGVKMWLQEIDRY---ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDS 155 (206)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTC
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHh---cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 89999999999998766666544432 3222 234689999999999976543322 2332 23358999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 008468 471 QGIQDLETAIMKIVG 485 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~ 485 (564)
.|+++++++|.+.+.
T Consensus 156 ~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 156 TNVEDAFLTMARQIK 170 (206)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998774
No 79
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=1.7e-20 Score=182.69 Aligned_cols=160 Identities=20% Similarity=0.238 Sum_probs=115.0
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCee--eEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVP--VTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~--i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+|+|++|||||||+|+|++....++..+++++.+.....+.+++.. +.+|||+|....... ....++
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~-------l~~~~~ 109 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW-------LHDHCM 109 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH-------HHHCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhh-------HHHHHH
Confidence 48999999999999999999998766666777777777777777888765 578999997542111 123457
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
+.+|++++|||+++..++.....|.. +.... ...+.|+|+|+||+|+........ +.+.. ...+++++||++|
T Consensus 110 ~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~--~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g 187 (211)
T 2g3y_A 110 QVGDAYLIVYSITDRASFEKASELRIQLRRAR--QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQ 187 (211)
T ss_dssp CCCSEEEEEEETTCHHHHHHHHHHHHHHHTSG--GGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCC
Confidence 88999999999998777766654433 33221 124689999999999975433322 22222 2357999999999
Q ss_pred CCHHHHHHHHHHHhhc
Q 008468 471 QGIQDLETAIMKIVGL 486 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~~ 486 (564)
.||+++|+.|.+.+..
T Consensus 188 ~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 188 HNVKELFEGIVRQVRL 203 (211)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987743
No 80
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=3.2e-20 Score=176.17 Aligned_cols=160 Identities=18% Similarity=0.190 Sum_probs=110.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..++|+|+|++|||||||+|+|++..+. ..+..+........+..++ ..+.+|||||..++.... ..+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~ 76 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFR--DTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQ--------RLS 76 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCC--CTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHH--------HHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCC--CcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHH--------HHh
Confidence 4589999999999999999999987653 2233333333334445554 467899999987765432 345
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHH-HHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcc-cCCcEEEEeccCC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELL-NRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l-~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~-~~~~~i~iSAktg 470 (564)
+..+|++++|+|++++.++.....| ..+.... ....+.|+++|+||+|+........ ..+.. ...+++++||++|
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (199)
T 2gf0_A 77 ISKGHAFILVFSVTSKQSLEELGPIYKLIVQIK-GSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMN 155 (199)
T ss_dssp HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHH-SCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCC
Confidence 7889999999999986665554333 3232221 1123679999999999976332221 22222 2357999999999
Q ss_pred CCHHHHHHHHHHHhhcc
Q 008468 471 QGIQDLETAIMKIVGLH 487 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~~~ 487 (564)
.|+++++++|.+.+...
T Consensus 156 ~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 156 YNVKELFQELLTLETRR 172 (199)
T ss_dssp BSHHHHHHHHHHHCSSS
T ss_pred CCHHHHHHHHHHHHhhh
Confidence 99999999999987543
No 81
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.83 E-value=3.3e-20 Score=173.23 Aligned_cols=156 Identities=17% Similarity=0.165 Sum_probs=112.2
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+++|++|||||||+|+|++..+.. ...++.+.+.....+.+++ ..+.+|||||...+... ...++
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 82 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--------APMYY 82 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCTT-TSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGG--------THHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCC-cCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhh--------hHHHh
Confidence 4899999999999999999999887542 2233334444445555654 57889999998665433 23458
Q ss_pred hcCcEEEEEecCCCCCChhHHHHH-HHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhc-ccCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELL-NRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVG-NSFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l-~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~-~~~~~~i~iSAktg 470 (564)
..+|++++|+|++++.++.....| ..+... ...+.|+++|+||+|+........ .++. ....+++++||++|
T Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 159 (181)
T 2efe_B 83 RGAAAAIIVFDVTNQASFERAKKWVQELQAQ---GNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTA 159 (181)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSC
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCC
Confidence 899999999999987665554433 333332 234789999999999976544322 2333 23357999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 008468 471 QGIQDLETAIMKIVG 485 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~ 485 (564)
.|+++++++|.+.+.
T Consensus 160 ~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 160 TNVKEIFYEIARRLP 174 (181)
T ss_dssp TTHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988764
No 82
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.83 E-value=1.2e-20 Score=173.45 Aligned_cols=155 Identities=22% Similarity=0.230 Sum_probs=112.3
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+++|++|||||||+|+|++..+. ....+.++.+.....+.+++ ..+.+|||||..++... ...++
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 75 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFT-KDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI--------TKAYY 75 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC-CCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC--------CHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHH--------HHHHh
Confidence 489999999999999999999987653 23334444566666667765 46889999997654332 23457
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
..+|++++|+|++++.+..+...|. .+.... .+.|+++|+||+|+........ +.+.. ...+++++||++|
T Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (168)
T 1z2a_A 76 RGAQACVLVFSTTDRESFEAISSWREKVVAEV----GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKED 151 (168)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH----CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC----CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCC
Confidence 8999999999999876665554333 233221 4689999999999976433222 22222 3357999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 008468 471 QGIQDLETAIMKIVG 485 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~ 485 (564)
.|+++++++|.+.+.
T Consensus 152 ~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 152 LNVSEVFKYLAEKHL 166 (168)
T ss_dssp BSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999988763
No 83
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=178.83 Aligned_cols=157 Identities=22% Similarity=0.241 Sum_probs=110.6
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhh
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSE 392 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~ 392 (564)
....+||+|+|++|||||||+|+|++.. +...+.+|+.+.....+.+++. .+.+|||||...+... ..
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~ 86 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKL--------RP 86 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSS--------GG
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHH--------hH
Confidence 3456999999999999999999999887 4567777887777777788875 5669999999766543 22
Q ss_pred hhhhcCcEEEEEecCCCCCChhHHH-HHHH-HHhccccCCCCCCEEEEEecCCCCCCC------------cchh---hhh
Q 008468 393 AVALGADVIIMTVSAVDGWTSEDSE-LLNR-IQSNKKSTESSTPMILVINKIDCAPSA------------SNEW---NKV 455 (564)
Q Consensus 393 ~~l~~aD~vl~ViD~s~~~s~~~~~-~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~------------~~~~---~~l 455 (564)
.++.++|++++|+|++++.++.+.. .|.. +... ..+.|+++|+||+|+.... .... ..+
T Consensus 87 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 162 (201)
T 2q3h_A 87 LCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH----CPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLL 162 (201)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH----CSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh----CCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHH
Confidence 4588999999999999877666653 3332 3322 2378999999999997531 1111 222
Q ss_pred cc--cCCcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 456 GN--SFNDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 456 ~~--~~~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
.. ...+++++||++|.|+++++++|.+.+.
T Consensus 163 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 163 AEEIKAASYIECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp HHHHTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHhcCCcEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 22 2237999999999999999999988764
No 84
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.83 E-value=1.1e-19 Score=165.96 Aligned_cols=155 Identities=24% Similarity=0.260 Sum_probs=113.0
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
+||+++|++|||||||+|+|++... ...+.+++.+.....+.+++. .+.+|||||..++..... .++.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~--------~~~~ 73 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHF--VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD--------QYMR 73 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHH--------HHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC--ccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHH--------Hhhc
Confidence 7899999999999999999998864 345556666666666677664 468899999887655432 3478
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcc-cCCcEEEEeccCCCC
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGN-SFNDHVFTCAVTGQG 472 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~-~~~~~i~iSAktg~G 472 (564)
.+|++++|+|++++.+..+...|.. +.... ...+.|+++|+||+|+.+...... +++.. ...+++++||++|.|
T Consensus 74 ~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~--~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 151 (166)
T 2ce2_X 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVK--DSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQG 151 (166)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHH--TCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCC
Confidence 8999999999998765555433332 32221 123689999999999976332221 33332 235899999999999
Q ss_pred HHHHHHHHHHHhh
Q 008468 473 IQDLETAIMKIVG 485 (564)
Q Consensus 473 I~eL~~~L~~~l~ 485 (564)
+++++++|.+.+.
T Consensus 152 i~~l~~~l~~~~~ 164 (166)
T 2ce2_X 152 VEDAFYTLVREIR 164 (166)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 85
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.83 E-value=3e-20 Score=176.16 Aligned_cols=157 Identities=18% Similarity=0.164 Sum_probs=111.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+||+|+|++|||||||+|+|++..+... ..+..+.+.....+.+++ ..+.+|||||+..+.... ..+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~ 94 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHD-SRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAIT--------SAY 94 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSS-CCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTH--------HHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhh--------HHH
Confidence 348999999999999999999999876432 223323444444455543 567899999997665432 345
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhc-ccCCcEEEEeccC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVG-NSFNDHVFTCAVT 469 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~-~~~~~~i~iSAkt 469 (564)
+..+|++|+|+|++++.++.....|. .+.. ....+.|+++|+||+|+........ ..+. ....+++++||++
T Consensus 95 ~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~---~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 171 (193)
T 2oil_A 95 YRGAVGALLVFDLTKHQTYAVVERWLKELYD---HAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALD 171 (193)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHT---TSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHH---hcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 88999999999999876655544332 2332 1235789999999999976433222 2232 2335799999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 008468 470 GQGIQDLETAIMKIVG 485 (564)
Q Consensus 470 g~GI~eL~~~L~~~l~ 485 (564)
|.|+++++++|.+.+.
T Consensus 172 ~~gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 172 STNVELAFETVLKEIF 187 (193)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988763
No 86
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.83 E-value=7.8e-21 Score=182.90 Aligned_cols=156 Identities=24% Similarity=0.293 Sum_probs=113.3
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeee--EEEeCCCCCCchhHHHHhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPV--TLLDTAGIRETDDIVEKIGVERSEA 393 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i--~LiDTpG~~~~~~~ie~~~i~~~~~ 393 (564)
.+.+||+++|.+|||||||+++|++..+ ...+.+|+.+.....+.+++..+ .+|||||+..+... ...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~ 97 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRL--------RPL 97 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCC--CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTT--------GGG
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCC--CCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHH--------HHH
Confidence 3459999999999999999999998764 46677777887777777777655 49999998665433 234
Q ss_pred hhhcCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcc------------hh---hhhcc
Q 008468 394 VALGADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASN------------EW---NKVGN 457 (564)
Q Consensus 394 ~l~~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~------------~~---~~l~~ 457 (564)
++..+|++++|+|++++.++.+.. .|....... ..+.|+++|+||+|+...... .. ..+..
T Consensus 98 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 174 (204)
T 4gzl_A 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH---CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK 174 (204)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH---CSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHH
Confidence 588999999999999877776653 343333221 247899999999999764321 11 12222
Q ss_pred c--CCcEEEEeccCCCCHHHHHHHHHHHh
Q 008468 458 S--FNDHVFTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 458 ~--~~~~i~iSAktg~GI~eL~~~L~~~l 484 (564)
. ..+++++||++|.|+++++++|.+.+
T Consensus 175 ~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 175 EIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred hcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 2 24699999999999999999998753
No 87
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.83 E-value=2.3e-20 Score=177.11 Aligned_cols=157 Identities=17% Similarity=0.116 Sum_probs=111.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+||+|+|++|||||||+|+|++..+.. ...+.++.+.....+.+++ ..+.+|||||...+... ...+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~ 90 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI--------TRSY 90 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCC--------CHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhh--------HHHH
Confidence 34899999999999999999999987542 2334444455555666776 47889999998655432 2345
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhc-ccCCcEEEEeccC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVG-NSFNDHVFTCAVT 469 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~-~~~~~~i~iSAkt 469 (564)
+..+|++++|+|++++.++.+...|. .+... ...+.|+++|+||+|+........ +.+. ....+++++||++
T Consensus 91 ~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~---~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 167 (191)
T 2a5j_A 91 YRGAAGALLVYDITRRETFNHLTSWLEDARQH---SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKT 167 (191)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH---SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 88999999999999876666554333 33221 234789999999999975433322 2232 2335799999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 008468 470 GQGIQDLETAIMKIVG 485 (564)
Q Consensus 470 g~GI~eL~~~L~~~l~ 485 (564)
|.|+++++++|.+.+.
T Consensus 168 ~~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 168 ACNVEEAFINTAKEIY 183 (191)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988764
No 88
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.82 E-value=2.6e-20 Score=177.85 Aligned_cols=159 Identities=19% Similarity=0.236 Sum_probs=112.0
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCee--eEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVP--VTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~--i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+|+|++|||||||+|+|++....+++.+++++.+.....+.+++.. +.+|||+|....... ....++
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~-------~~~~~~ 78 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEW-------LHDHCM 78 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CT-------TGGGHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhh-------HHHhhc
Confidence 38999999999999999999998665566767777777777777888765 568999997542111 123457
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
+.+|++++|||+++..++.....|.. +.... ...+.|+++|+||+|+........ ..+.. ...+++++||++|
T Consensus 79 ~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~--~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g 156 (192)
T 2cjw_A 79 QVGDAYLIVYSITDRASFEKASELRIQLRRAR--QTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQ 156 (192)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT--TTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccC
Confidence 88999999999998777766544433 33221 124689999999999975433322 22222 2357999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 008468 471 QGIQDLETAIMKIVG 485 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~ 485 (564)
.||+++|+.|.+.+.
T Consensus 157 ~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 157 HNVKELFEGIVRQVR 171 (192)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998774
No 89
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.82 E-value=1.1e-20 Score=204.60 Aligned_cols=162 Identities=30% Similarity=0.404 Sum_probs=110.5
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhc
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALG 397 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~ 397 (564)
..+|+|+|.+|||||||+|+|++...+.+.+.+|+|++.....+.+.+..+.+|||||+....+.........+..++..
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 37899999999999999999999988889999999999999998889999999999998643222122223445667899
Q ss_pred CcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcccCCcEEEEeccCCCCHHHHH
Q 008468 398 ADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDLE 477 (564)
Q Consensus 398 aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL~ 477 (564)
+|++|+|+|+.++.+..+..++..+.. .++|+++|+||+|+........+.+...+..++++||++|.|+.+|+
T Consensus 103 ad~il~VvD~~~~~~~~d~~l~~~l~~------~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv~~L~ 176 (456)
T 4dcu_A 103 ADVIIFMVNGREGVTAADEEVAKILYR------TKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLL 176 (456)
T ss_dssp CSEEEEEEESSSCSCHHHHHHHHHHTT------CCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTTHHHHH
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHH------cCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccchHHHH
Confidence 999999999998888887766665543 37899999999998754322212222334567899999999999999
Q ss_pred HHHHHHhh
Q 008468 478 TAIMKIVG 485 (564)
Q Consensus 478 ~~L~~~l~ 485 (564)
+.+.+.+.
T Consensus 177 ~~i~~~l~ 184 (456)
T 4dcu_A 177 DAVAEHFK 184 (456)
T ss_dssp HHHHTTGG
T ss_pred HHHHhhcc
Confidence 99987664
No 90
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.82 E-value=7.9e-20 Score=173.11 Aligned_cols=152 Identities=20% Similarity=0.201 Sum_probs=110.5
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEA 393 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~ 393 (564)
...+||+|+|++|||||||+|+|++..+. ..+..| .+.....+.+++. .+.+|||+|...+.
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~--~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------------- 81 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYV--QEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ------------- 81 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCC--CCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-------------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-------------
Confidence 34589999999999999999999998753 333334 3444567778884 45679999986643
Q ss_pred hhhcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCC--CCcchh---hhhccc--CCcEEEE
Q 008468 394 VALGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAP--SASNEW---NKVGNS--FNDHVFT 465 (564)
Q Consensus 394 ~l~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~--~~~~~~---~~l~~~--~~~~i~i 465 (564)
+++.+|++++|||++++.++++...|.. +.... ...+.|+++|+||+|+.. ...... .++... ..+++++
T Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 159 (184)
T 3ihw_A 82 FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFR--NASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYET 159 (184)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTS--CGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEE
T ss_pred eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEe
Confidence 4778999999999999877776544433 33221 124689999999999953 222221 333333 2689999
Q ss_pred eccCCCCHHHHHHHHHHHhh
Q 008468 466 CAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 466 SAktg~GI~eL~~~L~~~l~ 485 (564)
||++|.|+++++++|.+.+.
T Consensus 160 Sa~~~~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 160 CATYGLNVERVFQDVAQKVV 179 (184)
T ss_dssp BTTTTBTHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999998764
No 91
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.82 E-value=2.2e-20 Score=175.93 Aligned_cols=157 Identities=24% Similarity=0.279 Sum_probs=115.1
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh--
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA-- 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l-- 395 (564)
.++|+++|++|||||||+|+|++... .++.++++|.+.....+.+++..+.+|||||+..+........+ ...++
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~~~~~~ 83 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEII--ARDYIIN 83 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHH--HHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHH--HHHHHhc
Confidence 47999999999999999999999764 56888999999988889999999999999999865321111111 12223
Q ss_pred hcCcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCCcch--hhhhcc-cCCcEEEEeccCCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE--WNKVGN-SFNDHVFTCAVTGQ 471 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~--~~~l~~-~~~~~i~iSAktg~ 471 (564)
..+|++++|+|.++ .... ..+..+.. .+.|+++|+||+|+....... .+++.+ ...+++++||++|.
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLME------MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKM 154 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHT------TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTB
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHh------cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCC
Confidence 35999999999875 2322 22223322 368999999999986432221 133332 23589999999999
Q ss_pred CHHHHHHHHHHHhhc
Q 008468 472 GIQDLETAIMKIVGL 486 (564)
Q Consensus 472 GI~eL~~~L~~~l~~ 486 (564)
|++++++++.+.+..
T Consensus 155 ~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 155 GIEELKKAISIAVKD 169 (188)
T ss_dssp SHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998854
No 92
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.82 E-value=2.3e-20 Score=177.04 Aligned_cols=158 Identities=20% Similarity=0.158 Sum_probs=112.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+||+|+|++|||||||+|+|++..+ ...+.+|+.+.....+.+++ ..+.+|||||...+... ..+
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~---------~~~ 88 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRF--ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC---------ERY 88 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT---------HHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH---------HHH
Confidence 348999999999999999999999874 46666777666555666666 45778999998765432 235
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEec-c
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCA-V 468 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSA-k 468 (564)
+..+|++++|||++++.++.+...|. .+.........+.|+++|+||+|+........ +++.. ...+++++|| +
T Consensus 89 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~ 168 (187)
T 3c5c_A 89 LNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACL 168 (187)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSS
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecC
Confidence 78899999999999876666654333 33322111124789999999999965433322 22322 2357999999 8
Q ss_pred CCCCHHHHHHHHHHHhh
Q 008468 469 TGQGIQDLETAIMKIVG 485 (564)
Q Consensus 469 tg~GI~eL~~~L~~~l~ 485 (564)
+|.|++++++.|.+.+.
T Consensus 169 ~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 169 DFEHVQHVFHEAVREAR 185 (187)
T ss_dssp CSHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHh
Confidence 99999999999988764
No 93
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.82 E-value=3.8e-20 Score=176.99 Aligned_cols=160 Identities=19% Similarity=0.177 Sum_probs=115.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..++|+|+|++|||||||+|+|++..+. ....+.++.+.....+.+++ ..+.+|||||...+... ...+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~ 77 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL--------GVAF 77 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS--------CCGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHh--------HHHH
Confidence 3489999999999999999999998754 23345556777777777766 57899999998654332 2345
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHH-HHhccc-cCCCCCCEEEEEecCCCCCCCcchh--hhhc--ccCCcEEEEecc
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNR-IQSNKK-STESSTPMILVINKIDCAPSASNEW--NKVG--NSFNDHVFTCAV 468 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~-~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~--~~~~~~i~iSAk 468 (564)
+..+|++|+|+|++++.++.+...|.. +..... ....+.|+++|+||+|+........ ..+. ....+++++||+
T Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (207)
T 1vg8_A 78 YRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAK 157 (207)
T ss_dssp GTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTT
T ss_pred HhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCC
Confidence 789999999999998766665544332 322211 0113689999999999974322211 2332 234679999999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 008468 469 TGQGIQDLETAIMKIVG 485 (564)
Q Consensus 469 tg~GI~eL~~~L~~~l~ 485 (564)
+|.|+++++++|.+.+.
T Consensus 158 ~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 158 EAINVEQAFQTIARNAL 174 (207)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999988764
No 94
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.82 E-value=3.7e-20 Score=174.20 Aligned_cols=157 Identities=16% Similarity=0.160 Sum_probs=112.1
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEE-EEEEEECC-----------eeeEEEeCCCCCCchhHHHH
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVI-EASVTVCG-----------VPVTLLDTAGIRETDDIVEK 385 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~-~~~~~~~g-----------~~i~LiDTpG~~~~~~~ie~ 385 (564)
.+||+|+|++|||||||+|+|++..+. ....+..+.+.. ...+.+++ ..+.+|||||+..+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--- 86 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFN-SKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL--- 86 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH---
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-cCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH---
Confidence 489999999999999999999987653 223344444444 44555553 47899999999765443
Q ss_pred hhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHH-HHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCC
Q 008468 386 IGVERSEAVALGADVIIMTVSAVDGWTSEDSELL-NRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFN 460 (564)
Q Consensus 386 ~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l-~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~ 460 (564)
...++..+|++++|+|++++.+..+...| ..+.... ...+.|+++|+||+|+........ +++.. ...
T Consensus 87 -----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 159 (195)
T 3bc1_A 87 -----TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA--YSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGI 159 (195)
T ss_dssp -----HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--SSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC
T ss_pred -----HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC
Confidence 23558899999999999987666654433 3333221 114789999999999976433322 22322 235
Q ss_pred cEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 461 DHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 461 ~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
+++++||++|.|+++++++|.+.+.
T Consensus 160 ~~~~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 160 PYFETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999988764
No 95
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.82 E-value=8.7e-20 Score=174.39 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=112.0
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+|+|++|||||||+|+|++..+.. ...+..+.+.....+.+++ ..+.+|||||+..+... ...++
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 78 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTP-AFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTI--------TTAYY 78 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCS-CCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--------HHTTG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcch--------HHHhh
Confidence 4899999999999999999999987532 2233333444444555554 57889999998765443 23458
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTGQ 471 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg~ 471 (564)
..+|++|+|+|++++.++.....|...... ....+.|+++|+||+|+........ ..+.. ...+++++||++|.
T Consensus 79 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~--~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (203)
T 1zbd_A 79 RGAMGFILMYDITNEESFNAVQDWSTQIKT--YSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNI 156 (203)
T ss_dssp GGCSEEEEEEETTCHHHHHHHHHHHHHHHH--HSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHH--hcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCC
Confidence 899999999999987666555444332221 1234789999999999976543322 22322 23579999999999
Q ss_pred CHHHHHHHHHHHhh
Q 008468 472 GIQDLETAIMKIVG 485 (564)
Q Consensus 472 GI~eL~~~L~~~l~ 485 (564)
|+++++++|.+.+.
T Consensus 157 gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 157 NVKQTFERLVDVIC 170 (203)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
No 96
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.82 E-value=5e-20 Score=176.06 Aligned_cols=159 Identities=22% Similarity=0.172 Sum_probs=106.6
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEA 393 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~ 393 (564)
...+||+|+|++|||||||+|+|++..+.. ...+..+.+.....+.+++ ..+.||||||..++.... ..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~ 96 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRE-NISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIA--------KS 96 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC-----------CEEEEEEETTEEEEEEEEECTTCTTCHHHH--------HH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCc-cCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhH--------HH
Confidence 345899999999999999999999887531 1222233344445556665 568899999987765442 34
Q ss_pred hhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCC------CCcchh---hhhc-ccCCcEE
Q 008468 394 VALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP------SASNEW---NKVG-NSFNDHV 463 (564)
Q Consensus 394 ~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~------~~~~~~---~~l~-~~~~~~i 463 (564)
++..+|++|+|+|++++.++.+...|....... ...+.|+++|+||+|+.. ...... +.+. ....+++
T Consensus 97 ~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~--~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 174 (199)
T 2p5s_A 97 YFRKADGVLLLYDVTCEKSFLNIREWVDMIEDA--AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFC 174 (199)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH--C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEE
T ss_pred HHhhCCEEEEEEECCChHHHHHHHHHHHHHHHh--cCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEE
Confidence 578899999999999877666654443322211 224689999999999962 121111 2222 2235799
Q ss_pred EEeccCCCCHHHHHHHHHHHhh
Q 008468 464 FTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 464 ~iSAktg~GI~eL~~~L~~~l~ 485 (564)
++||++|.|+++++++|.+.+.
T Consensus 175 ~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 175 ETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHT
T ss_pred EeeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 97
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.82 E-value=1.7e-20 Score=179.73 Aligned_cols=157 Identities=17% Similarity=0.177 Sum_probs=108.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+||+|+|++|||||||+|+|++..+. ....+.++.+.....+.+++ ..+.||||||...+... ...+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--------~~~~ 94 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFK-QDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSV--------TRSY 94 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCC--------CHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-ccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHH--------HHHH
Confidence 4589999999999999999999988753 23345555566666677777 67899999996433221 3355
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhc-ccCCcEEEEeccC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVG-NSFNDHVFTCAVT 469 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~-~~~~~~i~iSAkt 469 (564)
+..+|++|+|+|++++.++.+...|. .+... ...+.|+++|+||+|+........ ..+. ....+++++||++
T Consensus 95 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~ 171 (200)
T 2o52_A 95 YRGAAGALLVYDITSRETYNSLAAWLTDARTL---ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALT 171 (200)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH---TCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTT
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHh---cCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 88999999999999876666554333 23221 235789999999999965433322 2222 2346799999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 008468 470 GQGIQDLETAIMKIVG 485 (564)
Q Consensus 470 g~GI~eL~~~L~~~l~ 485 (564)
|.|+++++++|.+.+.
T Consensus 172 g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 172 GENVEEAFLKCARTIL 187 (200)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988764
No 98
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.82 E-value=3.5e-20 Score=175.35 Aligned_cols=156 Identities=15% Similarity=0.160 Sum_probs=111.6
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+|+|++|||||||+|+|++..+.. ...+..+.+.....+..++ ..+.+|||||...+... ...++
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 92 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTP-AFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI--------TTAYY 92 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS--------GGGGG
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCC-CcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh--------HHHhc
Confidence 4899999999999999999999987532 2233333444444455554 57889999998765433 23458
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
..+|++++|+|++++.++.....|.. +... ...+.|+++|+||+|+........ +++.+ ...+++++||++|
T Consensus 93 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 169 (189)
T 2gf9_A 93 RGAMGFLLMYDIANQESFAAVQDWATQIKTY---SWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKEN 169 (189)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHH---SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCC
Confidence 89999999999998766665543432 3222 134789999999999976443322 23332 2357999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 008468 471 QGIQDLETAIMKIVG 485 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~ 485 (564)
.|+++++++|.+.+.
T Consensus 170 ~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 170 INVKQVFERLVDVIC 184 (189)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988764
No 99
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.82 E-value=9e-20 Score=172.24 Aligned_cols=157 Identities=23% Similarity=0.263 Sum_probs=110.1
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.++|+++|.+|||||||+|+|++..+ ...+.+|+.+.....+.+++. .+.+|||||..++.... ..++
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~~ 90 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR--------DQYM 90 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-------------------C
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCC--ccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHH--------HHhh
Confidence 48999999999999999999998764 355666666666667777764 47899999987654432 3457
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcc-cCCcEEEEeccCCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGN-SFNDHVFTCAVTGQ 471 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~-~~~~~i~iSAktg~ 471 (564)
..+|++++|+|+++..++.+...|.. +.... ...+.|+++|+||+|+........ +++.+ ...+++++||++|.
T Consensus 91 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 168 (190)
T 3con_A 91 RTGEGFLCVFAINNSKSFADINLYREQIKRVK--DSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQ 168 (190)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH--TCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCT
T ss_pred CcCCEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 89999999999998766665544433 22221 123689999999999976322211 23332 23589999999999
Q ss_pred CHHHHHHHHHHHhhc
Q 008468 472 GIQDLETAIMKIVGL 486 (564)
Q Consensus 472 GI~eL~~~L~~~l~~ 486 (564)
|+++++++|.+.+..
T Consensus 169 gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 169 GVEDAFYTLVREIRQ 183 (190)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987753
No 100
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.82 E-value=3.2e-20 Score=172.93 Aligned_cols=160 Identities=19% Similarity=0.229 Sum_probs=106.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEEC---CeeeEEEeCCCCCCchhHHHHhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC---GVPVTLLDTAGIRETDDIVEKIGVERSEA 393 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~---g~~i~LiDTpG~~~~~~~ie~~~i~~~~~ 393 (564)
..++|+++|++|||||||+|+|++..+. ....+.++.+.....+.++ ...+.+|||||...+... ...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~ 77 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYS-QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSL--------GVA 77 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-TTC---CCCSCEEEEECCSSSCCEEEEEECCC------------------C
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCC-cccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhh--------hHH
Confidence 3489999999999999999999998753 2233444455556666665 357899999997665433 234
Q ss_pred hhhcCcEEEEEecCCCCCChhHHHHHH-HHHhccc-cCCCCCCEEEEEecCCCCCCCc-chh---hhhcc--cCCcEEEE
Q 008468 394 VALGADVIIMTVSAVDGWTSEDSELLN-RIQSNKK-STESSTPMILVINKIDCAPSAS-NEW---NKVGN--SFNDHVFT 465 (564)
Q Consensus 394 ~l~~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~-~~~~~~PvIvV~NK~DL~~~~~-~~~---~~l~~--~~~~~i~i 465 (564)
++..+|++++|+|++++.++.+...|. .+..... ....+.|+++|+||+|+..... ... .++.. ...+++++
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~ 157 (182)
T 1ky3_A 78 FYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLT 157 (182)
T ss_dssp CSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEE
T ss_pred HhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEE
Confidence 578999999999999876666554433 2322211 1125789999999999964322 111 33333 34679999
Q ss_pred eccCCCCHHHHHHHHHHHhh
Q 008468 466 CAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 466 SAktg~GI~eL~~~L~~~l~ 485 (564)
||++|.|+++++++|.+.+.
T Consensus 158 Sa~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 158 SAKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988764
No 101
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.82 E-value=3.3e-20 Score=175.29 Aligned_cols=158 Identities=16% Similarity=0.125 Sum_probs=107.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccC----------eeEEEEEE--EE-EEC--CeeeEEEeCCCCCCchh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAG----------TTRDVIEA--SV-TVC--GVPVTLLDTAGIRETDD 381 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~g----------tT~d~~~~--~~-~~~--g~~i~LiDTpG~~~~~~ 381 (564)
..+||+|+|++|||||||++.+.+.... .+.+ .|...... .+ .++ ...+.+|||||...+..
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~---~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPE---GRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCG---GGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccc---cccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 3489999999999999999988875432 2211 12221111 11 222 35688999999987765
Q ss_pred HHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHH---HHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhcc
Q 008468 382 IVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNR---IQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGN 457 (564)
Q Consensus 382 ~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~---l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~ 457 (564)
... .+++.+|++|+|+|++++.+..+.+.+.. +.........+.|+++|+||+|+.+....+. +++..
T Consensus 90 ~~~--------~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~ 161 (198)
T 3t1o_A 90 SRK--------LILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVD 161 (198)
T ss_dssp HHH--------HHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHC
T ss_pred HHH--------HHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHH
Confidence 533 45899999999999996544444433332 2222222346789999999999977643332 33333
Q ss_pred -cCC-cEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 458 -SFN-DHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 458 -~~~-~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
... +++++||++|.|+++++++|.+.+.
T Consensus 162 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 162 PEGKFPVLEAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp TTCCSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred hcCCceEEEEecCCCcCHHHHHHHHHHHHH
Confidence 334 8999999999999999999998774
No 102
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=5e-20 Score=174.76 Aligned_cols=155 Identities=23% Similarity=0.241 Sum_probs=114.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+||+++|++|||||||+|+|++..+ ...+.+|+.+.....+.+++ ..+.+|||||..++... ...+
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 86 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL--------RPLS 86 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTT--------GGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHH--------HHHh
Confidence 348999999999999999999998864 45666666666666677776 56789999999776543 2345
Q ss_pred hhcCcEEEEEecCCCCCChhHHH-HH-HHHHhccccCCCCCCEEEEEecCCCCCCC------------cchh---hhhcc
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSE-LL-NRIQSNKKSTESSTPMILVINKIDCAPSA------------SNEW---NKVGN 457 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~-~l-~~l~~~~~~~~~~~PvIvV~NK~DL~~~~------------~~~~---~~l~~ 457 (564)
+..+|++++|+|++++.++.+.. .| ..+... ..+.|+++|+||+|+.... .... .++..
T Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (194)
T 2atx_A 87 YPMTDVFLICFSVVNPASFQNVKEEWVPELKEY----APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAK 162 (194)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH----STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHH
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh----CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHH
Confidence 88999999999999876666553 33 333322 2378999999999997642 1111 22222
Q ss_pred --cCCcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 458 --SFNDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 458 --~~~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
...+++++||++|.|+++++++|.+.+.
T Consensus 163 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 163 EIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp HHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 2237999999999999999999988763
No 103
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=1.1e-19 Score=171.69 Aligned_cols=159 Identities=22% Similarity=0.191 Sum_probs=112.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+||+|+|++|||||||+|+|++..+. ....+..+.+.....+.+++ ..+.||||||...+... ...+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~ 84 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFD-PELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL--------TPSY 84 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS--------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhh--------hHHH
Confidence 3489999999999999999999998753 22334444555555566655 56889999998765433 2345
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhc-ccCCcEEEEeccCC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVG-NSFNDHVFTCAVTG 470 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~-~~~~~~i~iSAktg 470 (564)
++.+|++++|+|++++.++.+...|. .+... ....+.|+++|+||+|+........ ..+. ....+++++||++|
T Consensus 85 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (195)
T 1x3s_A 85 YRGAQGVILVYDVTRRDTFVKLDNWLNELETY--CTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTC 162 (195)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHTTC--CSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHh--cCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCC
Confidence 88999999999999876666554443 23222 1124689999999999954322211 2222 23357999999999
Q ss_pred CCHHHHHHHHHHHhhc
Q 008468 471 QGIQDLETAIMKIVGL 486 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~~ 486 (564)
.|+++++++|.+.+..
T Consensus 163 ~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 163 DGVQCAFEELVEKIIQ 178 (195)
T ss_dssp TTHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998753
No 104
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.82 E-value=1.8e-20 Score=189.57 Aligned_cols=156 Identities=21% Similarity=0.246 Sum_probs=112.9
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh--
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA-- 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l-- 395 (564)
.++|+++|++|||||||+|+|++.. ..++++||+|.+.....+.. +..+.+|||||+..+........+. ..++
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~--~~~~~~ 78 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVA--RDYLLS 78 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHH--HHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHH--HHHHhc
Confidence 4799999999999999999999976 35789999999877776665 7889999999998654211111122 2233
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcch--hhhhcc-cCCcEEEEeccCCCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE--WNKVGN-SFNDHVFTCAVTGQG 472 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~--~~~l~~-~~~~~i~iSAktg~G 472 (564)
..+|++++|+|+++. .....++..+.. .+.|+++|+||+|+....... .+.+.. ...+++++||++|.|
T Consensus 79 ~~~d~vi~V~D~t~~--e~~~~~~~~l~~------~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~g 150 (272)
T 3b1v_A 79 QRADSILNVVDATNL--ERNLYLTTQLIE------TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTG 150 (272)
T ss_dssp TCCSEEEEEEEGGGH--HHHHHHHHHHHH------TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBS
T ss_pred CCCCEEEEEecCCch--HhHHHHHHHHHh------cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCC
Confidence 369999999999873 122222333332 368999999999986432221 133332 235899999999999
Q ss_pred HHHHHHHHHHHhh
Q 008468 473 IQDLETAIMKIVG 485 (564)
Q Consensus 473 I~eL~~~L~~~l~ 485 (564)
++++++.+.+.+.
T Consensus 151 i~el~~~i~~~~~ 163 (272)
T 3b1v_A 151 VDQVVKKAAHTTT 163 (272)
T ss_dssp HHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988664
No 105
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=1.3e-20 Score=178.70 Aligned_cols=161 Identities=17% Similarity=0.106 Sum_probs=112.1
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcce-eccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAI-VTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~-vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
...+||+|+|++|||||||+|+|++..+.. .....+++.......+...+..+.+|||||...+... ...+
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~ 92 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTI--------TTAY 92 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHH--------HHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHH--------HHHH
Confidence 455899999999999999999999876431 1112233333333333335577899999997555433 2345
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
+..+|++++|+|++++.++.....|...... ....+.|+++|+||+|+........ +.+.. ...+++++||++|
T Consensus 93 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~--~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (191)
T 3dz8_A 93 YRGAMGFILMYDITNEESFNAVQDWATQIKT--YSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKEN 170 (191)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHH--HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred HccCCEEEEEEECcCHHHHHHHHHHHHHHHH--hcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCC
Confidence 8899999999999987666655444433222 1234789999999999965543322 22222 3358999999999
Q ss_pred CCHHHHHHHHHHHhhc
Q 008468 471 QGIQDLETAIMKIVGL 486 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~~ 486 (564)
.|+++++++|.+.+..
T Consensus 171 ~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 171 ISVRQAFERLVDAICD 186 (191)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987743
No 106
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.82 E-value=2.4e-20 Score=178.52 Aligned_cols=159 Identities=21% Similarity=0.221 Sum_probs=113.9
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEEC--CeeeEEEeCCCCCCchhHHHHhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC--GVPVTLLDTAGIRETDDIVEKIGVERSEA 393 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~--g~~i~LiDTpG~~~~~~~ie~~~i~~~~~ 393 (564)
...+||+|+|.+|||||||+|+|++..+. ..+.+|+.+.....+.++ +..+.+|||||..++... ...
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~ 91 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL--------PYS 91 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCC--------CGG
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHH--------HHH
Confidence 45589999999999999999999998754 455555555555555544 466789999998765433 234
Q ss_pred hhhcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEecc
Q 008468 394 VALGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAV 468 (564)
Q Consensus 394 ~l~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAk 468 (564)
++..+|++++|+|++++.++.....|.. +... ....+.|+++|+||+|+........ +.+.. ...+++++||+
T Consensus 92 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 169 (201)
T 3oes_A 92 FIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEG--HGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSAR 169 (201)
T ss_dssp GTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTT
T ss_pred HHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHh--cCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCC
Confidence 5889999999999998766666544433 3222 1134689999999999976544332 22222 33589999999
Q ss_pred CCCCHHHHHHHHHHHhhc
Q 008468 469 TGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 469 tg~GI~eL~~~L~~~l~~ 486 (564)
+|.|++++++.|.+.+..
T Consensus 170 ~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 170 ENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999998754
No 107
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=9.3e-20 Score=173.59 Aligned_cols=156 Identities=23% Similarity=0.225 Sum_probs=113.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+||+|+|++|||||||+|+|++..+. ..+.+|+.+.....+.+++ ..+.+|||||..+ ... ...+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~--------~~~~ 95 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFI--WEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQ--------REGH 95 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHH--------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC--cccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccc--------hhhh
Confidence 4589999999999999999999998753 3444554444455566665 5688999999876 222 2345
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVT 469 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAkt 469 (564)
+..+|++++|+|++++.++.+...|. .+.... ...+.|+++|+||+|+........ ..+.. ...+++++||++
T Consensus 96 ~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 173 (196)
T 2atv_A 96 MRWGEGFVLVYDITDRGSFEEVLPLKNILDEIK--KPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACT 173 (196)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH--TTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTT
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhh--CCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCc
Confidence 78999999999999876666554333 233221 124789999999999976433322 22322 235799999999
Q ss_pred CC-CHHHHHHHHHHHhh
Q 008468 470 GQ-GIQDLETAIMKIVG 485 (564)
Q Consensus 470 g~-GI~eL~~~L~~~l~ 485 (564)
|. |+++++++|.+.+.
T Consensus 174 g~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 174 GEGNITEIFYELCREVR 190 (196)
T ss_dssp CTTCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 99 99999999988764
No 108
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.82 E-value=1.4e-20 Score=201.54 Aligned_cols=160 Identities=29% Similarity=0.442 Sum_probs=116.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe-eeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV-PVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~-~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
..++|+|+|++|+|||||+|+|++.++..+++++++|.+.....+.+.+. ++.+|||||+.++... ....+.++..++
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l-~~~~~~~~~~~l 111 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGEL-GRLRVEKARRVF 111 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTT-CCCCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccch-hHHHHHHHHHHH
Confidence 45899999999999999999999998877889999999999888888776 8999999999876432 122344566778
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhccc-CCcEEEEeccCCCCH
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGNS-FNDHVFTCAVTGQGI 473 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~~-~~~~i~iSAktg~GI 473 (564)
..+|++|+|+|+ .....+..++..+... +.|+++|+||+|+........ +++.+. ..+++++||++|.|+
T Consensus 112 ~~aD~vllVvD~--~~~~~~~~~l~~l~~~------~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI 183 (423)
T 3qq5_A 112 YRADCGILVTDS--APTPYEDDVVNLFKEM------EIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGF 183 (423)
T ss_dssp TSCSEEEEECSS--SCCHHHHHHHHHHHHT------TCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTST
T ss_pred hcCCEEEEEEeC--CChHHHHHHHHHHHhc------CCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCH
Confidence 999999999998 3445555555555443 689999999999987665433 444432 357899999999999
Q ss_pred HHHHHHHHHHhh
Q 008468 474 QDLETAIMKIVG 485 (564)
Q Consensus 474 ~eL~~~L~~~l~ 485 (564)
+++++.|.+.+.
T Consensus 184 ~eL~~~L~~~l~ 195 (423)
T 3qq5_A 184 DDIGKTISEILP 195 (423)
T ss_dssp TTHHHHHHHHSC
T ss_pred HHHHHHHHHhhh
Confidence 999999999884
No 109
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.82 E-value=3.7e-20 Score=173.39 Aligned_cols=155 Identities=24% Similarity=0.272 Sum_probs=112.7
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCee--eEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVP--VTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~--i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+++|++|||||||+|+|++..+ ...+.+|+.+.....+.+++.. +.+|||||+..+... ...++
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 74 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRL--------RPLSY 74 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTT--------GGGGC
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC--CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHH--------HHHhc
Confidence 48999999999999999999998764 3555666666666666777654 569999998665432 23457
Q ss_pred hcCcEEEEEecCCCCCChhHHH-HHH-HHHhccccCCCCCCEEEEEecCCCCCCCc------------chh---hhhccc
Q 008468 396 LGADVIIMTVSAVDGWTSEDSE-LLN-RIQSNKKSTESSTPMILVINKIDCAPSAS------------NEW---NKVGNS 458 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~-~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~------------~~~---~~l~~~ 458 (564)
..+|++++|+|++++.++.+.. .|. .+... ..+.|+++|+||+|+.+... ... ..+...
T Consensus 75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 150 (186)
T 1mh1_A 75 PQTDVSLICFSLVSPASFENVRAKWYPEVRHH----CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 150 (186)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH----STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHHh----CCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHh
Confidence 8999999999999876666653 333 33322 23789999999999975421 111 222222
Q ss_pred -C-CcEEEEeccCCCCHHHHHHHHHHHhhc
Q 008468 459 -F-NDHVFTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 459 -~-~~~i~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
. .+++++||++|.|++++++.|.+.+..
T Consensus 151 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 151 IGAVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred cCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 2 379999999999999999999998753
No 110
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.82 E-value=4.4e-20 Score=179.28 Aligned_cols=158 Identities=16% Similarity=0.117 Sum_probs=113.5
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEA 393 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~ 393 (564)
...+||+|+|++|||||||+|+|++..+ ...+.+|+.+.....+.+++ ..+.+|||||...+... ...
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~ 94 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNV--------RPL 94 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTT--------GGG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCC--CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHH--------HHH
Confidence 3459999999999999999999999875 35555565555555555555 56789999998765433 234
Q ss_pred hhhcCcEEEEEecCCCCCChhH-HHHHHHHHhccccCCCCCCEEEEEecCCCCCC------------Ccchh---hhhcc
Q 008468 394 VALGADVIIMTVSAVDGWTSED-SELLNRIQSNKKSTESSTPMILVINKIDCAPS------------ASNEW---NKVGN 457 (564)
Q Consensus 394 ~l~~aD~vl~ViD~s~~~s~~~-~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~------------~~~~~---~~l~~ 457 (564)
+++.+|++|+|||++++.++.+ ...|....... ..+.|+++|+||+|+... ..... ..+..
T Consensus 95 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 171 (214)
T 3q3j_B 95 CYSDSDAVLLCFDISRPETVDSALKKWRTEILDY---CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAK 171 (214)
T ss_dssp GCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHH---CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHH
Confidence 5889999999999999877776 34444333221 247899999999999753 11211 22322
Q ss_pred -cCC-cEEEEeccCCCC-HHHHHHHHHHHhhc
Q 008468 458 -SFN-DHVFTCAVTGQG-IQDLETAIMKIVGL 486 (564)
Q Consensus 458 -~~~-~~i~iSAktg~G-I~eL~~~L~~~l~~ 486 (564)
... +++++||++|.| ++++|+.|.+.+..
T Consensus 172 ~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 172 QLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp HHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred HcCCCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 234 799999999998 99999999998754
No 111
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.81 E-value=4.2e-20 Score=180.07 Aligned_cols=157 Identities=18% Similarity=0.209 Sum_probs=110.3
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+|+|++|||||||+|+|++..+.. ...+.++.+.....+.+++ ..+.||||||...+... ...++
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 83 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNM-DSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAI--------TSAYY 83 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCC--------CGGGT
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhh--------HHHHh
Confidence 4899999999999999999999987642 2334445555566677777 57899999998765433 23458
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
..+|++|+|+|++++.++.+...|.. +... ...+.|+++|+||+|+........ ..+.. ...+++++||++|
T Consensus 84 ~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~---~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (223)
T 3cpj_B 84 RGAVGALIVYDISKSSSYENCNHWLSELREN---ADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNS 160 (223)
T ss_dssp TTCCEEEEEEC-CCHHHHHHHHHHHHHHHHH---CC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-C
T ss_pred ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHh---CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 89999999999998777666544432 3222 134689999999999975433322 23322 3357999999999
Q ss_pred CCHHHHHHHHHHHhhc
Q 008468 471 QGIQDLETAIMKIVGL 486 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~~ 486 (564)
.|+++++++|.+.+..
T Consensus 161 ~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 161 ENVDKAFEELINTIYQ 176 (223)
T ss_dssp CCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998754
No 112
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.81 E-value=7.6e-20 Score=176.83 Aligned_cols=158 Identities=16% Similarity=0.152 Sum_probs=111.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEEC------------CeeeEEEeCCCCCCchhHHH
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC------------GVPVTLLDTAGIRETDDIVE 384 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~------------g~~i~LiDTpG~~~~~~~ie 384 (564)
..+||+|+|++|||||||+|+|++..+. ....+.++.+.....+.++ ...+.||||||...+...
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~-- 100 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFN-PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL-- 100 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCC-CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH--
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCC-cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH--
Confidence 3489999999999999999999987753 2333444445555555554 457899999997544332
Q ss_pred HhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCC-CCCCEEEEEecCCCCCCCcchh---hhhcc-cC
Q 008468 385 KIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTE-SSTPMILVINKIDCAPSASNEW---NKVGN-SF 459 (564)
Q Consensus 385 ~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~-~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~ 459 (564)
...++..+|++|+|+|++++.++.+...|.. ....... .+.|+++|+||+|+........ +++.. ..
T Consensus 101 ------~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~--~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~ 172 (217)
T 2f7s_A 101 ------TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMS--QLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYG 172 (217)
T ss_dssp ------HHHHHTTCCEEEEEEETTCHHHHHHHHHHHH--TCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT
T ss_pred ------HHHHhcCCCEEEEEEECcCHHHHHHHHHHHH--HHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCC
Confidence 3456889999999999998655554433322 2211111 5789999999999976433322 23332 33
Q ss_pred CcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 460 NDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 460 ~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
.+++++||++|.|+++++++|.+.+.
T Consensus 173 ~~~~~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 173 IPYFETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp CCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999988764
No 113
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.81 E-value=3.2e-21 Score=184.40 Aligned_cols=157 Identities=17% Similarity=0.187 Sum_probs=109.8
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+|+|++|||||||+|+|++..+. ....++++.+.....+.+++ ..+.+|||||...+... ...++
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 103 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI--------TSSYY 103 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCC-CHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCC--------SCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHH--------HHHHh
Confidence 489999999999999999999987753 34456667777777778877 56889999998765433 23458
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTGQ 471 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg~ 471 (564)
..+|++++|+|++++.++.....|...... ....+.|+++|+||+|+.+...... +.+.. ...+++++||++|.
T Consensus 104 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~--~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~ 181 (199)
T 3l0i_B 104 RGAHGIIVVYDVTDQESFNNVKQWLQEIDR--YASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNAT 181 (199)
T ss_dssp CCCSEEEECC-CCCSHHHHHHHHHHHHHHS--CC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---H
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHH--hccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 899999999999998776665544433322 2234789999999999976543322 22222 33578999999999
Q ss_pred CHHHHHHHHHHHhh
Q 008468 472 GIQDLETAIMKIVG 485 (564)
Q Consensus 472 GI~eL~~~L~~~l~ 485 (564)
|+++++++|.+.+.
T Consensus 182 gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 182 NVEQSFMTMAAEIK 195 (199)
T ss_dssp HHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987654
No 114
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.81 E-value=2e-20 Score=181.80 Aligned_cols=158 Identities=13% Similarity=0.101 Sum_probs=115.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC-cceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE-RAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~-~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
..+||+|+|.+|||||||+|+|+... ........+++.......+...+..+.+|||||...+... ...++
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 85 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL--------RDGYY 85 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCC--------CHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHH--------HHHHH
Confidence 44899999999999999999966543 3345666777777666555445577899999997654432 23457
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh-hhh-cccCCcEEEEeccCCCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW-NKV-GNSFNDHVFTCAVTGQG 472 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l-~~~~~~~i~iSAktg~G 472 (564)
..+|++++|+|++++.++.+...|.. +... ..+.|+++|+||+|+.+...... ..+ .....+++++||++|.|
T Consensus 86 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 161 (221)
T 3gj0_A 86 IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV----CENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYN 161 (221)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHH----STTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBT
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 89999999999998777666544433 3322 23789999999999976543322 111 22346799999999999
Q ss_pred HHHHHHHHHHHhhc
Q 008468 473 IQDLETAIMKIVGL 486 (564)
Q Consensus 473 I~eL~~~L~~~l~~ 486 (564)
+++++++|.+.+..
T Consensus 162 i~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 162 FEKPFLWLARKLIG 175 (221)
T ss_dssp TTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998753
No 115
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.81 E-value=4e-20 Score=178.88 Aligned_cols=158 Identities=16% Similarity=0.126 Sum_probs=107.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEEC-C--eeeEEEeCCCCCCchhHHHHhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC-G--VPVTLLDTAGIRETDDIVEKIGVERSEA 393 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~-g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~ 393 (564)
..+||+|+|.+|||||||+|+|++..+.. ...+.++.......+... + ..+.+|||||+..+... ...
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~ 80 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEK-NYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVL--------KDV 80 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTC-EEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCC--------CHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchH--------HHH
Confidence 45899999999999999999999876431 111222222222222222 2 56899999998654432 224
Q ss_pred hhhcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhc-ccCCcEEEEecc
Q 008468 394 VALGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVG-NSFNDHVFTCAV 468 (564)
Q Consensus 394 ~l~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~-~~~~~~i~iSAk 468 (564)
++..+|++++|+|++++.++.+...|.. +... ...+.|+++|+||+|+........ ..+. ....+++++||+
T Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (218)
T 4djt_A 81 YYIGASGAILFFDVTSRITCQNLARWVKEFQAV---VGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAK 157 (218)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH---HCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTT
T ss_pred HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHh---cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecC
Confidence 5788999999999999877766644433 3222 123589999999999976543332 2232 234679999999
Q ss_pred CCCCHHHHHHHHHHHhhc
Q 008468 469 TGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 469 tg~GI~eL~~~L~~~l~~ 486 (564)
+|.|+++++++|.+.+..
T Consensus 158 ~g~gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 158 TAHNFGLPFLHLARIFTG 175 (218)
T ss_dssp TTBTTTHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999998854
No 116
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.81 E-value=6.5e-20 Score=173.43 Aligned_cols=158 Identities=17% Similarity=0.154 Sum_probs=111.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+||+|+|++|||||||+|+|++..+.. ...+.++.+.....+.+++ ..+.+|||||..++. ......+
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~ 90 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPD-RTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFR-------KSMVQHY 90 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCS-SCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHH-------TTTHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhh-------hhhhHHH
Confidence 44899999999999999999999877532 3344455556666677776 578999999975432 1123456
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHH-HHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELL-NRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVT 469 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l-~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAkt 469 (564)
++.+|++++|+|++++.++.....| ..+.... ...+.|+++|+||+|+........ +.+.. ...+++++||++
T Consensus 91 ~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 168 (189)
T 1z06_A 91 YRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL--LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKN 168 (189)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHC--CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSS
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCc
Confidence 8899999999999987666655433 3333321 134789999999999975443322 33332 335899999999
Q ss_pred C---CCHHHHHHHHHHHh
Q 008468 470 G---QGIQDLETAIMKIV 484 (564)
Q Consensus 470 g---~GI~eL~~~L~~~l 484 (564)
| .|+++++++|.+.+
T Consensus 169 ~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 169 PNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp GGGGSCHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHH
Confidence 9 99999999987765
No 117
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.81 E-value=8.2e-21 Score=177.51 Aligned_cols=156 Identities=22% Similarity=0.250 Sum_probs=102.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+||+++|++|||||||+|+|++..+ ...+.+|+.+.....+.+++ ..+.+|||||...+... ...+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~ 76 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRL--------RPLS 76 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC--C----------CBCCCC-------CEEECCCC-CTTTTT--------GGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhh--------HHhh
Confidence 458999999999999999999998764 35566666554443344444 45669999998765433 2345
Q ss_pred hhcCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcc----------hh---hhhcc--c
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASN----------EW---NKVGN--S 458 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~----------~~---~~l~~--~ 458 (564)
+..+|++++|+|++++.++.+.. .|....... ..+.|+++|+||+|+.+.... .. .++.. .
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 153 (182)
T 3bwd_D 77 YRGADVFILAFSLISKASYENVSKKWIPELKHY---APGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIG 153 (182)
T ss_dssp GTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH---CTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcC
Confidence 78999999999999876666553 343322221 237899999999999764331 11 22332 2
Q ss_pred CCcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 459 FNDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 459 ~~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
..+++++||++|.|++++++.|.+.+.
T Consensus 154 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 154 APAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 237999999999999999999988763
No 118
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=8.5e-20 Score=175.70 Aligned_cols=157 Identities=24% Similarity=0.228 Sum_probs=108.4
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.+||+++|++|||||||+|+|++..+. ..+.+|+.+.....+.+++ ..+.+|||||..++... ...++
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 94 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRL--------RPLSY 94 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCTTT--------GGGGC
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCC--CcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHH--------HHhhc
Confidence 479999999999999999999998754 3444454444444566776 46789999998766433 23457
Q ss_pred hcCcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCCc------------chh---hhhccc-
Q 008468 396 LGADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSAS------------NEW---NKVGNS- 458 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~------------~~~---~~l~~~- 458 (564)
..+|++++|+|++++.++... ..|...... ...+.|+++|+||+|+..... ... ..+...
T Consensus 95 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 171 (207)
T 2fv8_A 95 PDTDVILMCFSVDSPDSLENIPEKWVPEVKH---FCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRI 171 (207)
T ss_dssp TTCCEEEEEEETTCHHHHHHHHHTHHHHHHH---HSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHH---hCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhc
Confidence 899999999999987665554 333332222 124789999999999975421 111 112211
Q ss_pred -CCcEEEEeccCCCCHHHHHHHHHHHhhcc
Q 008468 459 -FNDHVFTCAVTGQGIQDLETAIMKIVGLH 487 (564)
Q Consensus 459 -~~~~i~iSAktg~GI~eL~~~L~~~l~~~ 487 (564)
..+++++||++|.|+++++++|.+.+...
T Consensus 172 ~~~~~~~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 172 QAYDYLECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 13789999999999999999999987543
No 119
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.81 E-value=3.6e-20 Score=190.55 Aligned_cols=163 Identities=17% Similarity=0.194 Sum_probs=122.2
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEE-CCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTV-CGVPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~-~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
.+||+++|++|||||||+|+|++.....+++.+++|.+.....+.+ ++..+.+|||||+..+ .+.+.......+++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~---~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF---MENYFTKQKDHIFQ 79 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH---HHHHHTTTHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH---hhhhhhhHHHHHhc
Confidence 4899999999999999999999986667788899999888887776 6688999999998654 22222334556689
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcch---------hhhhcccC----CcEE
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE---------WNKVGNSF----NDHV 463 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~---------~~~l~~~~----~~~i 463 (564)
++|++++|+|++++.++.+...|..+.........+.|+++|+||+|+....... .+++...+ .+++
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~ 159 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGF 159 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEE
T ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 9999999999999888887765544332222223578999999999998622211 13333332 6899
Q ss_pred EEeccCCCCHHHHHHHHHHHh
Q 008468 464 FTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 464 ~iSAktg~GI~eL~~~L~~~l 484 (564)
++||++ .|+.+++..+.+.+
T Consensus 160 ~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 160 PTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp ECCTTS-SHHHHHHHHHHHTT
T ss_pred EeeecC-ChHHHHHHHHHHHH
Confidence 999999 78888888877643
No 120
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.81 E-value=6.4e-20 Score=176.97 Aligned_cols=156 Identities=21% Similarity=0.194 Sum_probs=104.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEEC---CeeeEEEeCCCCCCchhHHHHhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC---GVPVTLLDTAGIRETDDIVEKIGVERSEA 393 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~---g~~i~LiDTpG~~~~~~~ie~~~i~~~~~ 393 (564)
..+||+|+|++|||||||+|+|++..+ ...+++++.+... +.++ +..+.+|||||+.++... ....
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~ 74 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY--RDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQ-------LLDR 74 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC--CCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHH-------HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc--ccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHH-------HHHH
Confidence 358999999999999999999999874 4566666655544 5565 578999999998654431 1234
Q ss_pred hhhcCcEEEEEecCCCCCC-h-hHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--h----------------
Q 008468 394 VALGADVIIMTVSAVDGWT-S-EDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--N---------------- 453 (564)
Q Consensus 394 ~l~~aD~vl~ViD~s~~~s-~-~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~---------------- 453 (564)
+++.+|++++|+|+++... . ...+.|..+.........+.|+++|+||+|+........ +
T Consensus 75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 154 (214)
T 2fh5_B 75 FKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAA 154 (214)
T ss_dssp HGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhc
Confidence 5889999999999986211 1 112333333222112234689999999999976543211 0
Q ss_pred -------------------hhcc-c---CCcEEEEeccCC------CCHHHHHHHHHHH
Q 008468 454 -------------------KVGN-S---FNDHVFTCAVTG------QGIQDLETAIMKI 483 (564)
Q Consensus 454 -------------------~l~~-~---~~~~i~iSAktg------~GI~eL~~~L~~~ 483 (564)
.+.. . ..+++++||++| .||++++++|.+.
T Consensus 155 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 155 PSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ----------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 0000 0 345899999999 9999999999875
No 121
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.81 E-value=1.5e-20 Score=179.49 Aligned_cols=161 Identities=22% Similarity=0.228 Sum_probs=81.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeE-EEEEEEEEECC----eeeEEEeCCCCCCchhHHHHhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTR-DVIEASVTVCG----VPVTLLDTAGIRETDDIVEKIGVERS 391 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~-d~~~~~~~~~g----~~i~LiDTpG~~~~~~~ie~~~i~~~ 391 (564)
..++|+|+|++|||||||+|+|++....+...+.+|+. +.....+.+++ ..+.+|||||+..+... .
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~ 90 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQ--------I 90 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHH--------H
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHH--------H
Confidence 45899999999999999999999984334556666653 66677777775 57899999998654433 3
Q ss_pred hhhhhcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCC-CCcchh---hhhcc-cCCcEEEE
Q 008468 392 EAVALGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAP-SASNEW---NKVGN-SFNDHVFT 465 (564)
Q Consensus 392 ~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~-~~~~~~---~~l~~-~~~~~i~i 465 (564)
..++..+|++++|+|++++.++.....|.. +.........+.|+++|+||+|+.. ...... .++.. ...+++++
T Consensus 91 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~ 170 (208)
T 2yc2_C 91 SQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDV 170 (208)
T ss_dssp STTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEEC
T ss_pred HHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEe
Confidence 355889999999999998776665543333 3322110014789999999999976 433322 23332 23689999
Q ss_pred eccC-CCCHHHHHHHHHHHhh
Q 008468 466 CAVT-GQGIQDLETAIMKIVG 485 (564)
Q Consensus 466 SAkt-g~GI~eL~~~L~~~l~ 485 (564)
||++ |.|+++++++|.+.+.
T Consensus 171 Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 171 SANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp CC-------CHHHHHHHHHHH
T ss_pred ccCCCCcCHHHHHHHHHHHHH
Confidence 9999 9999999999988763
No 122
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.81 E-value=1.9e-18 Score=181.36 Aligned_cols=162 Identities=24% Similarity=0.314 Sum_probs=118.9
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCch----hHHHHhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD----DIVEKIGVERS 391 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~----~~ie~~~i~~~ 391 (564)
...++|+++|++|||||||+|+|++... .+..++++|.+.....+..++..+.+|||||+.+.. ..++.. ..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---~~ 240 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQ---AI 240 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHH---HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHH---HH
Confidence 4568999999999999999999999873 567788999888888888888999999999986532 111111 11
Q ss_pred hhhhhcCcEEEEEecCCCCC--ChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcccCCcEEEEe
Q 008468 392 EAVALGADVIIMTVSAVDGW--TSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGNSFNDHVFTC 466 (564)
Q Consensus 392 ~~~l~~aD~vl~ViD~s~~~--s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~~~~~~i~iS 466 (564)
......+|++++|+|++++. +..+. .++..+.... .+.|+++|+||+|+........ +.+.....+++++|
T Consensus 241 ~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~----~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iS 316 (357)
T 2e87_A 241 LALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF----KDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKIS 316 (357)
T ss_dssp HGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT----TTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECB
T ss_pred HHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc----CCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEe
Confidence 22345699999999998765 44443 3444444321 1689999999999976543321 11223346799999
Q ss_pred ccCCCCHHHHHHHHHHHhh
Q 008468 467 AVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 467 Aktg~GI~eL~~~L~~~l~ 485 (564)
|++|.|+++++++|.+.+.
T Consensus 317 A~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 317 ALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp TTTTBTHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 9999999999999998774
No 123
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.81 E-value=3.5e-20 Score=178.50 Aligned_cols=157 Identities=21% Similarity=0.228 Sum_probs=115.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+||+|+|++|||||||+++|++..+ ...+.+|+.+.....+.+++ ..+.+|||||+..+.... ..+
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~ 77 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLR--------PLS 77 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC----------CGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHH--------Hhh
Confidence 348999999999999999999998764 35566666666666666766 478899999998765442 245
Q ss_pred hhcCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcc--------hh---hhhccc--CC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASN--------EW---NKVGNS--FN 460 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~--------~~---~~l~~~--~~ 460 (564)
+..+|++++|+|++++.++.+.. .|....... ..+.|+++|+||+|+...... .. +++... ..
T Consensus 78 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 154 (212)
T 2j0v_A 78 YRGADIFVLAFSLISKASYENVLKKWMPELRRF---APNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAA 154 (212)
T ss_dssp GTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH---CTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCS
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCc
Confidence 88999999999999876666543 333322221 237899999999999764321 11 233322 24
Q ss_pred cEEEEeccCCCCHHHHHHHHHHHhhc
Q 008468 461 DHVFTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 461 ~~i~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
+++++||++|.|+++++++|.+.+..
T Consensus 155 ~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 155 AYIECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred eEEEccCCCCCCHHHHHHHHHHHHhh
Confidence 79999999999999999999998754
No 124
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.81 E-value=8e-20 Score=177.13 Aligned_cols=157 Identities=16% Similarity=0.145 Sum_probs=101.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+||+|+|++|||||||+|+|++..+ ...+.+|+.+.....+.+++. .+.+|||||..++.... ..+
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~--------~~~ 102 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAF--PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLR--------PLF 102 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC---------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHH--------HHH
Confidence 348999999999999999999998764 345556666666666777765 67899999987654432 245
Q ss_pred hhcCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCc------------chh---hhhccc
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSAS------------NEW---NKVGNS 458 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~------------~~~---~~l~~~ 458 (564)
+..+|++++|+|++++.++.... .|...... ...+.|+++|+||+|+..... ... .++...
T Consensus 103 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 179 (214)
T 2j1l_A 103 YPDASVLLLCFDVTSPNSFDNIFNRWYPEVNH---FCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARS 179 (214)
T ss_dssp --CEEEEEEEEETTCHHHHHHHHHTHHHHHHH---HCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHH---hCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHh
Confidence 78999999999999876666553 33332221 124689999999999976431 111 223222
Q ss_pred -C-CcEEEEeccCCCCHHHHHHHHHHHhhc
Q 008468 459 -F-NDHVFTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 459 -~-~~~i~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
. .+++++||++|.|++++++.|.+.+..
T Consensus 180 ~~~~~~~~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 180 VGAVAYLECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp TTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 2 379999999999999999999987753
No 125
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=187.40 Aligned_cols=156 Identities=19% Similarity=0.218 Sum_probs=113.4
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
++.+||+|+|.+|||||||+|+|++..+ +..+| |.+.....+..++..+.||||||...+.... ..++
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~--~~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~~ 230 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLW--------RHYF 230 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCC--EEEEE--ETTEEEEEEEETTEEEEEEECC-----CCSH--------HHHH
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCC--CCccc--ccceEEEEEecCcEEEEEEECCCCHhHHHHH--------HHHh
Confidence 4568999999999999999999998874 34444 4455556677889999999999987654432 3457
Q ss_pred hcCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcc-----cCCcEEEEec
Q 008468 396 LGADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGN-----SFNDHVFTCA 467 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~-----~~~~~i~iSA 467 (564)
+.+|++|+|||+++..++.... .+..+.... ...+.|+++|+||+|+........ +.+.. ...+++++||
T Consensus 231 ~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~--~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSA 308 (329)
T 3o47_A 231 QNTQGLIFVVDSNDRERVNEAREELMRMLAED--ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCA 308 (329)
T ss_dssp TTEEEEEEEEETTCSSSHHHHHHHHHHHHTCG--GGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBT
T ss_pred ccCCEEEEEEECCchHHHHHHHHHHHHHHhhh--ccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEEC
Confidence 8999999999999988877653 333343321 124789999999999987644332 22221 2246899999
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 008468 468 VTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 468 ktg~GI~eL~~~L~~~l~ 485 (564)
++|.||+++++.|.+.+.
T Consensus 309 k~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 309 TSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp TTTBTHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 999999999999998874
No 126
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.80 E-value=1.8e-19 Score=172.64 Aligned_cols=155 Identities=25% Similarity=0.218 Sum_probs=108.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+||+|+|.+|||||||+|+|.+..+. ..+.+|+.+.....+.+++ ..+.+|||||..++... ...+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~ 93 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRL--------RPLS 93 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC--SSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTT--------GGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCC--cccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHH--------HHHh
Confidence 3489999999999999999999998753 3333333332333456666 46789999998655433 2345
Q ss_pred hhcCcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCCc------------chh---hhhccc
Q 008468 395 ALGADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSAS------------NEW---NKVGNS 458 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~------------~~~---~~l~~~ 458 (564)
+..+|++++|+|++++.++.+. ..|....... ..+.|+++|+||+|+..... ... ..+...
T Consensus 94 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 170 (201)
T 2gco_A 94 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANR 170 (201)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH---STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHh
Confidence 8899999999999987666555 3343332221 24789999999999976521 111 122221
Q ss_pred --CCcEEEEeccCCCCHHHHHHHHHHHh
Q 008468 459 --FNDHVFTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 459 --~~~~i~iSAktg~GI~eL~~~L~~~l 484 (564)
..+++++||++|.|+++++++|.+.+
T Consensus 171 ~~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 171 ISAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp TTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 23789999999999999999998865
No 127
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.80 E-value=1.1e-19 Score=171.32 Aligned_cols=156 Identities=17% Similarity=0.175 Sum_probs=110.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+||+++|++|||||||+|+|++..+. ..+.+|..+.....+.+++ ..+.+|||||...+... ...+
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~ 75 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV--------RPLS 75 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTT--------GGGG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhh--------HHhh
Confidence 3489999999999999999999998753 4444444444444556655 56789999998655433 2345
Q ss_pred hhcCcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCC------------Ccchh---hhhccc
Q 008468 395 ALGADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPS------------ASNEW---NKVGNS 458 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~------------~~~~~---~~l~~~ 458 (564)
+..+|++++|+|++++.++.+. ..|....... ..+.|+++|+||+|+... ..... +++...
T Consensus 76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 152 (184)
T 1m7b_A 76 YPDSDAVLICFDISRPETLDSVLKKWKGEIQEF---CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ 152 (184)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH---CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred cCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHH---CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHH
Confidence 7899999999999987666655 3443322211 247899999999999742 11111 233332
Q ss_pred --CCcEEEEecc-CCCCHHHHHHHHHHHhh
Q 008468 459 --FNDHVFTCAV-TGQGIQDLETAIMKIVG 485 (564)
Q Consensus 459 --~~~~i~iSAk-tg~GI~eL~~~L~~~l~ 485 (564)
..+++++||+ +|.|++++++.+.+.+.
T Consensus 153 ~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 153 IGAATYIECSALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp HTCSEEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEeeecCCCcCHHHHHHHHHHHHh
Confidence 2579999999 68999999999988763
No 128
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.79 E-value=4.5e-19 Score=182.12 Aligned_cols=158 Identities=23% Similarity=0.267 Sum_probs=118.0
Q ss_pred hhcCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeE--EEeCCCCCCchhHHHHhhhhhh
Q 008468 314 LLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVT--LLDTAGIRETDDIVEKIGVERS 391 (564)
Q Consensus 314 ~~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~--LiDTpG~~~~~~~ie~~~i~~~ 391 (564)
..+..++|+++|.+|||||||+|++++..+ ...+.+|+.+.....+.+++..+. +|||||...+... .
T Consensus 151 ~~~~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~ 220 (332)
T 2wkq_A 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRL--------R 220 (332)
T ss_dssp HHTTCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTT--------G
T ss_pred cccceeEEEEECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHH--------H
Confidence 345679999999999999999999998764 466778888888888888886655 9999998765432 2
Q ss_pred hhhhhcCcEEEEEecCCCCCChhHHH-HHHH-HHhccccCCCCCCEEEEEecCCCCCCC------------cchh---hh
Q 008468 392 EAVALGADVIIMTVSAVDGWTSEDSE-LLNR-IQSNKKSTESSTPMILVINKIDCAPSA------------SNEW---NK 454 (564)
Q Consensus 392 ~~~l~~aD~vl~ViD~s~~~s~~~~~-~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~------------~~~~---~~ 454 (564)
..++..+|++++|+|++++.++.+.. .|.. +... ..+.|+++|+||+|+.... .... ..
T Consensus 221 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 296 (332)
T 2wkq_A 221 PLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHH----CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 296 (332)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH----CTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhh----CCCCcEEEEEEchhcccccchhhhccccccccccHHHHHH
Confidence 34588999999999999877666653 3332 3222 2378999999999996531 1111 22
Q ss_pred hccc-C-CcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 455 VGNS-F-NDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 455 l~~~-~-~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
+... . .+++++||++|.|++++++.|.+.+.
T Consensus 297 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 297 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 2222 2 37999999999999999999998764
No 129
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.79 E-value=2.1e-19 Score=171.43 Aligned_cols=162 Identities=16% Similarity=0.144 Sum_probs=103.9
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEE-ECCeeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVT-VCGVPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~-~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
...+||+++|++|||||||+|++.+......+.....+.......+. .....+.+|||||...+....- ....+
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-----~~~~~ 92 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTF-----DYEMI 92 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTC-----CHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhh-----hcccc
Confidence 45599999999999999999999886432211111112222221221 2347889999999876543310 00355
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcc-------hh---hhhcc-----cC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN-------EW---NKVGN-----SF 459 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~-------~~---~~l~~-----~~ 459 (564)
++.+|++|+|+|++++ ..+....|..+.........+.|+++|+||+|+.+.... .. +.+.. ..
T Consensus 93 ~~~~~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (196)
T 3llu_A 93 FRGTGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH 171 (196)
T ss_dssp HHTCSEEEEEEETTSC-CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred cccCCEEEEEEECCCc-hHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence 8899999999999987 444444443333322112357899999999998763211 11 22222 23
Q ss_pred CcEEEEeccCCCCHHHHHHHHHHHh
Q 008468 460 NDHVFTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 460 ~~~i~iSAktg~GI~eL~~~L~~~l 484 (564)
.+++++||++ .|++++|+.|.+.+
T Consensus 172 ~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 172 LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cceEEEEech-hhHHHHHHHHHHHh
Confidence 5789999999 99999999998754
No 130
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.79 E-value=4.4e-19 Score=193.83 Aligned_cols=157 Identities=20% Similarity=0.230 Sum_probs=117.2
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
...+||+|+|.+|||||||+|+|++.++ +...+ |.+.....+.+++..+.||||||...+... ...++
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~--~~~~~--T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 387 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQS--VTTIP--TVGFNVETVTYKNVKFNVWDVGGQDKIRPL--------WRHYY 387 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSC--CCCCC--CSSEEEEEEESSSCEEEEEEECCCGGGSGG--------GGGGG
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCC--CCcCC--ccceeEEEEEeCCEEEEEEECCCcHHHHHH--------HHHHh
Confidence 3458999999999999999999999874 34333 555666677889999999999998766543 34568
Q ss_pred hcCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcc-----cCCcEEEEec
Q 008468 396 LGADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGN-----SFNDHVFTCA 467 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~-----~~~~~i~iSA 467 (564)
+.+|++|+|||++++.++.+.. .+..+.... ...++|+|+|+||+|+........ +.+.. ...+++++||
T Consensus 388 ~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 465 (497)
T 3lvq_E 388 TGTQGLIFVVDCADRDRIDEARQELHRIINDR--EMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCA 465 (497)
T ss_dssp TTCCEEEEEEETTCGGGHHHHHHHHHHHHTSG--GGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBT
T ss_pred ccCCEEEEEEECcchhHHHHHHHHHHHHhhhh--hcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEEC
Confidence 9999999999999987776653 333343321 124789999999999976543322 22211 2235899999
Q ss_pred cCCCCHHHHHHHHHHHhhc
Q 008468 468 VTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 468 ktg~GI~eL~~~L~~~l~~ 486 (564)
++|.||++++++|.+.+..
T Consensus 466 ~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 466 TSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp TTTBTHHHHHHHHHHHCC-
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998754
No 131
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.79 E-value=1.4e-19 Score=180.74 Aligned_cols=167 Identities=17% Similarity=0.188 Sum_probs=116.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccC-eeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhh---hhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAG-TTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIG---VERSE 392 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~g-tT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~---i~~~~ 392 (564)
..++|+|+|++|||||||+|+|++......+..+. +|++.....+.+++..+.||||||+.++....+.+. .....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~ 100 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYL 100 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999999987555444455 788888888889999999999999976532222211 22233
Q ss_pred hhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEe-cCCCCCCCcch------------h-hhhccc
Q 008468 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVIN-KIDCAPSASNE------------W-NKVGNS 458 (564)
Q Consensus 393 ~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~N-K~DL~~~~~~~------------~-~~l~~~ 458 (564)
.+++.+|++|+|+|+++ ....+...+..+...... ....|.++|+| |+|+....... . +.+...
T Consensus 101 ~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~-~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~ 178 (260)
T 2xtp_A 101 LSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGE-DAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGGR 178 (260)
T ss_dssp HHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTC
T ss_pred hcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCc-hhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhCCe
Confidence 46789999999999985 555555555555443211 11356777777 99997542211 0 111111
Q ss_pred ---CCcEEEEeccCCCCHHHHHHHHHHHhhc
Q 008468 459 ---FNDHVFTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 459 ---~~~~i~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
+.+ +++||++|.|++++++.|.+.+..
T Consensus 179 ~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 179 ICAFNN-RAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp EEECCT-TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecC-cccccccHHHHHHHHHHHHHHHHh
Confidence 222 789999999999999999998864
No 132
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.78 E-value=2.3e-19 Score=173.20 Aligned_cols=155 Identities=18% Similarity=0.199 Sum_probs=110.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
..+||+|+|++|||||||+|+|++..+. ..+.+|........+.+++ ..+.+|||||...+... ...+
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~ 96 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV--------RPLS 96 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTT--------GGGG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHH--------HHhh
Confidence 3489999999999999999999998753 3444444444444555555 56889999998665433 2345
Q ss_pred hhcCcEEEEEecCCCCCChhHH-HHHHH-HHhccccCCCCCCEEEEEecCCCCCC------------Ccchh---hhhcc
Q 008468 395 ALGADVIIMTVSAVDGWTSEDS-ELLNR-IQSNKKSTESSTPMILVINKIDCAPS------------ASNEW---NKVGN 457 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~-~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~------------~~~~~---~~l~~ 457 (564)
+..+|++++|+|++++.++.+. ..|.. +... ..+.|+++|+||+|+... ..... +++..
T Consensus 97 ~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 172 (205)
T 1gwn_A 97 YPDSDAVLICFDISRPETLDSVLKKWKGEIQEF----CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK 172 (205)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH----CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH----CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHH
Confidence 7899999999999987666655 33433 3222 247899999999999742 11111 23332
Q ss_pred c--CCcEEEEecc-CCCCHHHHHHHHHHHhh
Q 008468 458 S--FNDHVFTCAV-TGQGIQDLETAIMKIVG 485 (564)
Q Consensus 458 ~--~~~~i~iSAk-tg~GI~eL~~~L~~~l~ 485 (564)
. ..+++++||+ +|.|++++++.+.+.+.
T Consensus 173 ~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 173 QIGAATYIECSALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp HHTCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeeeccCCcCHHHHHHHHHHHHh
Confidence 2 2579999999 68999999999988753
No 133
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.65 E-value=1.4e-20 Score=180.49 Aligned_cols=155 Identities=23% Similarity=0.260 Sum_probs=111.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
+.+||+++|++|||||||+|+|++..+ ...+.+|+.+.....+.+++. .+.+|||||..++.... ..+
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~ 98 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR--------PLS 98 (204)
Confidence 458999999999999999999998764 455666776666666666654 45699999987654332 245
Q ss_pred hhcCcEEEEEecCCCCCChhHHH-HHHHHHhccccCCCCCCEEEEEecCCCCCCCc------------chh---hhhccc
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKSTESSTPMILVINKIDCAPSAS------------NEW---NKVGNS 458 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~------------~~~---~~l~~~ 458 (564)
+..+|++++|+|++++.++.+.. .|...... ...+.|+++|+||+|+.+... ... ..+...
T Consensus 99 ~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~---~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 175 (204)
T 3th5_A 99 YPQTDVFLICFSLVSPASFENVRAKWYPEVRH---HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 175 (204)
Confidence 78899999999999987776653 33332221 123689999999999975431 111 122221
Q ss_pred C--CcEEEEeccCCCCHHHHHHHHHHHh
Q 008468 459 F--NDHVFTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 459 ~--~~~i~iSAktg~GI~eL~~~L~~~l 484 (564)
. .+++++||++|.|++++++.|.+.+
T Consensus 176 ~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 176 IGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 1 2789999999999999999987653
No 134
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.77 E-value=1.9e-19 Score=187.87 Aligned_cols=165 Identities=21% Similarity=0.203 Sum_probs=118.8
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC-eeeEEEeCCCCCCchhHHHHhhhhhhhhhhhc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG-VPVTLLDTAGIRETDDIVEKIGVERSEAVALG 397 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g-~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~ 397 (564)
.+|+|+|.+|||||||+|+|++... .+.+++++|.+.....+.+++ ..+.||||||+.+.......++ ......+..
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~-~~fl~~i~~ 236 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLG-HQFLRHIER 236 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTH-HHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCC-ccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhH-HHHHHHHHh
Confidence 5799999999999999999999875 468899999888877788876 8899999999753211111111 112233567
Q ss_pred CcEEEEEecCCC---CCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcccC---CcEEEEeccCCC
Q 008468 398 ADVIIMTVSAVD---GWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSF---NDHVFTCAVTGQ 471 (564)
Q Consensus 398 aD~vl~ViD~s~---~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~~~---~~~i~iSAktg~ 471 (564)
+|++|+|+|+++ ..+..+...|...+..+.....++|+++|+||+|+...... .+++.+.+ .+++++||+++.
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~-~~~l~~~l~~~~~v~~iSA~tg~ 315 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAEN-LEAFKEKLTDDYPVFPISAVTRE 315 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHH-HHHHHHHCCSCCCBCCCSSCCSS
T ss_pred ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHH-HHHHHHHhhcCCCEEEEECCCCc
Confidence 999999999987 55555555444433332222347899999999999754321 12333322 478999999999
Q ss_pred CHHHHHHHHHHHhhc
Q 008468 472 GIQDLETAIMKIVGL 486 (564)
Q Consensus 472 GI~eL~~~L~~~l~~ 486 (564)
|+++|+++|.+.+..
T Consensus 316 gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 316 GLRELLFEVANQLEN 330 (342)
T ss_dssp TTHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998864
No 135
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.76 E-value=3e-18 Score=170.66 Aligned_cols=169 Identities=17% Similarity=0.120 Sum_probs=115.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceecccc-CeeEEEEEEEEEECCeeeEEEeCCCCCCchhHH-HHhhhhhhh--
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIA-GTTRDVIEASVTVCGVPVTLLDTAGIRETDDIV-EKIGVERSE-- 392 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~-gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~i-e~~~i~~~~-- 392 (564)
..++|+|+|.+|||||||+|+|++.........+ ++|+......+.+++..+.||||||+.+..... +.+......
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~ 99 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCY 99 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHH
Confidence 4589999999999999999999998865443333 478888888888999999999999997654433 222111111
Q ss_pred -hhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---------hhhcc-cCCc
Q 008468 393 -AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---------NKVGN-SFND 461 (564)
Q Consensus 393 -~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---------~~l~~-~~~~ 461 (564)
.....+|++|+|+|+++ .+..+...++.+...+.....+.|+|+|+||+|+......+. +.+.+ ....
T Consensus 100 ~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~ 178 (247)
T 3lxw_A 100 LLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGR 178 (247)
T ss_dssp HHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTC
T ss_pred HhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCe
Confidence 22489999999999985 666666666666554332223679999999999976432111 12222 2245
Q ss_pred EEEEeccC-----CCCHHHHHHHHHHHhhc
Q 008468 462 HVFTCAVT-----GQGIQDLETAIMKIVGL 486 (564)
Q Consensus 462 ~i~iSAkt-----g~GI~eL~~~L~~~l~~ 486 (564)
++.++++. +.|+++|++.|.+.+..
T Consensus 179 ~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 179 VCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 66666554 58999999999998864
No 136
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.76 E-value=9e-19 Score=165.38 Aligned_cols=156 Identities=19% Similarity=0.206 Sum_probs=101.1
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccc-cCeeEEEEEEEEEE-----CCeeeEEEeCCCCCCchhHHHHhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEI-AGTTRDVIEASVTV-----CGVPVTLLDTAGIRETDDIVEKIGVERSE 392 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~-~gtT~d~~~~~~~~-----~g~~i~LiDTpG~~~~~~~ie~~~i~~~~ 392 (564)
+||+|+|++|||||||+|+|++....+...+ +.+..+.....+.+ ....+.+|||+|+..+... ..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~ 74 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYST--------HP 74 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTT--------SH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHh--------hH
Confidence 7999999999999999999998643333433 33335554444333 3567899999997544322 23
Q ss_pred hhhhcCcEEEEEecCCCCC-ChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcch----h--hhhcccC-Cc--
Q 008468 393 AVALGADVIIMTVSAVDGW-TSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNE----W--NKVGNSF-ND-- 461 (564)
Q Consensus 393 ~~l~~aD~vl~ViD~s~~~-s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~----~--~~l~~~~-~~-- 461 (564)
.++..+|++++|+|++++. ++.....|. .+... ..+.|+++|+||+|+....... . +.+.... .+
T Consensus 75 ~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (184)
T 2zej_A 75 HFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR----ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAI 150 (184)
T ss_dssp HHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHH----CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEE
T ss_pred HHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhh----CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcch
Confidence 4578899999999998863 344443332 22221 2368999999999997654321 1 2333322 33
Q ss_pred --EEEEeccCCC-CHHHHHHHHHHHhhc
Q 008468 462 --HVFTCAVTGQ-GIQDLETAIMKIVGL 486 (564)
Q Consensus 462 --~i~iSAktg~-GI~eL~~~L~~~l~~ 486 (564)
++++||++|. |+++|++.|.+.+..
T Consensus 151 ~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 151 RDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp EEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred hheEEEecccCchhHHHHHHHHHHHHhc
Confidence 8999999996 999999999887754
No 137
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.75 E-value=4.6e-18 Score=159.85 Aligned_cols=157 Identities=22% Similarity=0.295 Sum_probs=99.0
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchh----HHHHhhhhhhhhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDD----IVEKIGVERSEAV 394 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~----~ie~~~i~~~~~~ 394 (564)
+||+++|++|||||||+|+|++..+ .+...+++|.+.....+ + .+.+|||||+..... ..+.+. .....+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~-~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMGLPKEVQERIK-DEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTTSCHHHHHHHH-HHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCC-ccCCCCCccceeEEEec--C--CEEEEECCCccccccCCHHHHHHHH-HHHHHH
Confidence 6899999999999999999999875 35667777766544333 3 789999999753211 111111 111222
Q ss_pred h----hcCcEEEEEecCCCCCChhHH-HHHHH---------HHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcccC-
Q 008468 395 A----LGADVIIMTVSAVDGWTSEDS-ELLNR---------IQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSF- 459 (564)
Q Consensus 395 l----~~aD~vl~ViD~s~~~s~~~~-~~l~~---------l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~~~- 459 (564)
+ ..++++++|+|.. ++.+. +.|.. +.... ...+.|+++|+||+|+........+++...+
T Consensus 76 ~~~~~~~~~~v~~v~d~~---s~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 150 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGK---AAPEIIKRWEKRGEIPIDVEFYQFL--RELDIPTIVAVNKLDKIKNVQEVINFLAEKFE 150 (190)
T ss_dssp HHHHGGGCCEEEEEEETT---HHHHHHHHHHHTTCCCHHHHHHHHH--HHTTCCEEEEEECGGGCSCHHHHHHHHHHHHT
T ss_pred HHhhhccCCEEEEEEcch---hhhhHHHhhhccCccHHHHHHHHHH--HhcCCceEEEeehHhccCcHHHHHHHHHHHhh
Confidence 3 3455666666654 33322 22211 11110 1136899999999999765421123332211
Q ss_pred -------CcEEEEeccCCCCHHHHHHHHHHHhhc
Q 008468 460 -------NDHVFTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 460 -------~~~i~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
.+++++||++|.|+++++++|.+.+..
T Consensus 151 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 151 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 247999999999999999999988753
No 138
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.74 E-value=5.9e-18 Score=171.90 Aligned_cols=162 Identities=21% Similarity=0.213 Sum_probs=105.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcc-----eeccccC----------------------eeEEE-------------
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERA-----IVTEIAG----------------------TTRDV------------- 356 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~-----~vs~~~g----------------------tT~d~------------- 356 (564)
..++|+|+|.+|||||||+|+|++.++. .++..|+ +|++.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 4589999999999999999999998865 4455554 33220
Q ss_pred ----------EEEEEEE-CCeeeEEEeCCCCCCch-----hHHHHhhhhhhhhhhhcCcEEE-EEecCCCCCChhHH-HH
Q 008468 357 ----------IEASVTV-CGVPVTLLDTAGIRETD-----DIVEKIGVERSEAVALGADVII-MTVSAVDGWTSEDS-EL 418 (564)
Q Consensus 357 ----------~~~~~~~-~g~~i~LiDTpG~~~~~-----~~ie~~~i~~~~~~l~~aD~vl-~ViD~s~~~s~~~~-~~ 418 (564)
....+.. ++..+.||||||+.... ...+.........++..++.++ +|+|++++.+..+. .+
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 0111111 24689999999987421 1111122233456677887665 79999887665553 23
Q ss_pred HHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcc-------cCCcEEEEeccCCCCHHHHHHHHHHHh
Q 008468 419 LNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGN-------SFNDHVFTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 419 l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~-------~~~~~i~iSAktg~GI~eL~~~L~~~l 484 (564)
+..+. ..+.|+++|+||+|+.+......+.+.. .+.+++++||++|.|++++++.|.+..
T Consensus 185 ~~~~~------~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 185 AKEVD------PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHHC------TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHhC------CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 33332 2368999999999997654321111111 123578899999999999999988743
No 139
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.73 E-value=4.4e-17 Score=179.81 Aligned_cols=155 Identities=17% Similarity=0.218 Sum_probs=98.1
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCee-EEEEEE------EEEE----CCeeeEEEeCCCCCCchhHHH
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTT-RDVIEA------SVTV----CGVPVTLLDTAGIRETDDIVE 384 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT-~d~~~~------~~~~----~g~~i~LiDTpG~~~~~~~ie 384 (564)
...+||+++|.+|||||||+|+|++..+. ..+.+|. .+.... .+.+ .+..+.+|||||...+...
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~--~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~-- 114 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFD--PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHAS-- 114 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTT--
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHH--
Confidence 45589999999999999999999998743 3333322 222211 1112 2578999999998765443
Q ss_pred HhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHH-HHHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhh-cccC
Q 008468 385 KIGVERSEAVALGADVIIMTVSAVDGWTSEDSELL-NRIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKV-GNSF 459 (564)
Q Consensus 385 ~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l-~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l-~~~~ 459 (564)
...+++.+|++|+|+|+++. ++...| ..+... ..+.|+|+|+||+|+........ +++ ....
T Consensus 115 ------~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~----~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~ 181 (535)
T 3dpu_A 115 ------HQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKY----GGKSPVIVVMNKIDENPSYNIEQKKINERFPAIE 181 (535)
T ss_dssp ------CHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHH----SSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGT
T ss_pred ------HHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHh----CCCCCEEEEEECCCcccccccCHHHHHHHHHhcC
Confidence 22447889999999999764 333333 333332 23689999999999986554332 222 2233
Q ss_pred CcEEEEeccCCCCHHHHHHHHHHHhhcc
Q 008468 460 NDHVFTCAVTGQGIQDLETAIMKIVGLH 487 (564)
Q Consensus 460 ~~~i~iSAktg~GI~eL~~~L~~~l~~~ 487 (564)
.+++++||++|.|++++++.|.+.+...
T Consensus 182 ~~~~~vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 182 NRFHRISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp TCEEECCC-----CTTHHHHHHHHHTCT
T ss_pred CceEEEecCcccCHHHHHHHHHHHHhcc
Confidence 5799999999999999999999988643
No 140
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.72 E-value=3.3e-17 Score=176.55 Aligned_cols=149 Identities=18% Similarity=0.172 Sum_probs=107.4
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceecc------------------------------ccCeeEEEEEEEEEECC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTE------------------------------IAGTTRDVIEASVTVCG 365 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~------------------------------~~gtT~d~~~~~~~~~g 365 (564)
+..++|+++|++|+|||||+|+|++....+... .+|+|.+.....+..++
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 345899999999999999999997654332222 26789999888899999
Q ss_pred eeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCC-------hhHHHHHHHHHhccccCCCCCC-EEE
Q 008468 366 VPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWT-------SEDSELLNRIQSNKKSTESSTP-MIL 437 (564)
Q Consensus 366 ~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s-------~~~~~~l~~l~~~~~~~~~~~P-vIv 437 (564)
..+.||||||+.++... ....+..+|++|+|+|++++.. .+..+.+..+.. .+.| +|+
T Consensus 95 ~~~~iiDTPGh~~f~~~--------~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~------~~v~~iIv 160 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPN--------MIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT------AGVKHLIV 160 (439)
T ss_pred eEEEEEECCChHHHHHH--------HHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH------cCCCeEEE
Confidence 99999999998765332 2345788999999999998754 344444444332 2566 999
Q ss_pred EEecCCCCCCCcch----h--hhh---cc-------cCCcEEEEeccCCCCHHHHHH
Q 008468 438 VINKIDCAPSASNE----W--NKV---GN-------SFNDHVFTCAVTGQGIQDLET 478 (564)
Q Consensus 438 V~NK~DL~~~~~~~----~--~~l---~~-------~~~~~i~iSAktg~GI~eL~~ 478 (564)
|+||+|+....... . +++ .. ...+++++||++|.|++++.+
T Consensus 161 viNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 161 LINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred EeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 99999996432111 0 111 11 124689999999999999654
No 141
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.71 E-value=1.6e-17 Score=167.73 Aligned_cols=161 Identities=17% Similarity=0.173 Sum_probs=93.7
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceecc-------ccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchh------HH
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTE-------IAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDD------IV 383 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~-------~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~------~i 383 (564)
++|+|+|.+|+|||||+|+|++.+...... .++++.+.....+..+|. .+.+|||||+.+..+ .+
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i 88 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV 88 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHH
Confidence 799999999999999999999887643332 344455555555655664 789999999964311 11
Q ss_pred HHhhhhhhhhhh-------------hcCcEEEEEecCCC-CCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCc
Q 008468 384 EKIGVERSEAVA-------------LGADVIIMTVSAVD-GWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449 (564)
Q Consensus 384 e~~~i~~~~~~l-------------~~aD~vl~ViD~s~-~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~ 449 (564)
-.+-..+...++ .++|+++++++.+. +....+...++.+.. ++|+|+|+||+|+.....
T Consensus 89 ~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-------~~pvi~V~nK~D~~~~~e 161 (274)
T 3t5d_A 89 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-------KVNIIPLIAKADTLTPEE 161 (274)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-------TSCEEEEESSGGGSCHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-------cCCEEEEEeccCCCCHHH
Confidence 000011111222 23789999887665 566666666665532 689999999999875433
Q ss_pred chh------hhhcccCCcEEEEeccCCCCHHHHHHHHHHHhhc
Q 008468 450 NEW------NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 450 ~~~------~~l~~~~~~~i~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
... +.+.....+++++||+++.|+++++++|.+.+..
T Consensus 162 ~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 162 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL 204 (274)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCc
Confidence 321 2222334578899999999999999999987643
No 142
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.71 E-value=8.4e-19 Score=192.52 Aligned_cols=154 Identities=25% Similarity=0.361 Sum_probs=120.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEE-CCeeeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTV-CGVPVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~-~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
..++|+++|++|+|||||+|+|.+..+. ....+++|.+.....+.+ ++..+.||||||+..+.... ..++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~-~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~--------~~~~ 73 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVA-AMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMR--------ARGT 73 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHH-HSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSB--------BSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc-cccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHH--------HHHH
Confidence 4578999999999999999999987754 346778888877666666 56789999999997765442 2347
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhc------cc---CCcEEEE
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVG------NS---FNDHVFT 465 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~------~~---~~~~i~i 465 (564)
..+|++++|+|++++...+..+.|..+.. .+.|+|+|+||+|+........ ..+. .. ..+++++
T Consensus 74 ~~aD~vILVVDa~dg~~~qt~e~l~~~~~------~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~v 147 (537)
T 3izy_P 74 QVTDIVILVVAADDGVMKQTVESIQHAKD------AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHV 147 (537)
T ss_dssp BSBSSCEEECBSSSCCCHHHHHHHHHHHT------TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCC
T ss_pred ccCCEEEEEEECCCCccHHHHHHHHHHHH------cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEE
Confidence 88999999999999988888887776654 3689999999999975433221 1111 11 1368999
Q ss_pred eccCCCCHHHHHHHHHHHhh
Q 008468 466 CAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 466 SAktg~GI~eL~~~L~~~l~ 485 (564)
||++|.|+++|++.|...+.
T Consensus 148 SAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 148 SALTGENMMALAEATIALAE 167 (537)
T ss_dssp CSSSSCSSHHHHHHHHHHHT
T ss_pred ECCCCCCchhHHHHHHHhhh
Confidence 99999999999999998764
No 143
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.71 E-value=1.9e-17 Score=182.13 Aligned_cols=116 Identities=22% Similarity=0.291 Sum_probs=91.8
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcce---------------ecc------ccCeeEEEEEEEEEECCeeeEEEeCCCCC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAI---------------VTE------IAGTTRDVIEASVTVCGVPVTLLDTAGIR 377 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~---------------vs~------~~gtT~d~~~~~~~~~g~~i~LiDTpG~~ 377 (564)
.+|+|+|++|||||||+|+|+.....+ +.+ .+++|.......+.+++..++||||||+.
T Consensus 14 r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (528)
T 3tr5_A 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHA 93 (528)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCch
Confidence 689999999999999999997322111 111 35666666677788899999999999998
Q ss_pred CchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCC
Q 008468 378 ETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448 (564)
Q Consensus 378 ~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~ 448 (564)
++... ...+++.+|++|+|+|++++.+.++...|..+.. .++|+++|+||+|+....
T Consensus 94 df~~~--------~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~------~~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 94 DFTED--------TYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRL------RHTPIMTFINKMDRDTRP 150 (528)
T ss_dssp TCCHH--------HHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHT------TTCCEEEEEECTTSCCSC
T ss_pred hHHHH--------HHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH------cCCCEEEEEeCCCCcccc
Confidence 87654 3345889999999999999988888888876654 368999999999997543
No 144
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.71 E-value=5.8e-17 Score=154.81 Aligned_cols=156 Identities=20% Similarity=0.233 Sum_probs=110.6
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.++|+|+|++|||||||+|+|++..+.. ...+.++.+.....+.++|. .+.+|||+|...+... ...++
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~--------~~~~~ 75 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRI--------TSAYY 75 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCC--------CHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhh--------hHHHH
Confidence 3799999999999999999999987542 23344455666777888885 4578999997654322 23446
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
..+|++++|+|+++..++.+...|. .+... ...+.|+++|+||+|+........ ..+.. ....++++||+++
T Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~ 152 (199)
T 2f9l_A 76 RGAVGALLVYDIAKHLTYENVERWLKELRDH---ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDS 152 (199)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHH---SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHh---cCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 7899999999998876665543332 22221 124679999999999975433222 22322 2346889999999
Q ss_pred CCHHHHHHHHHHHhh
Q 008468 471 QGIQDLETAIMKIVG 485 (564)
Q Consensus 471 ~GI~eL~~~L~~~l~ 485 (564)
.|++++++.|.+.+.
T Consensus 153 ~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 153 TNVEEAFKNILTEIY 167 (199)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988774
No 145
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.71 E-value=2.2e-17 Score=179.92 Aligned_cols=154 Identities=20% Similarity=0.263 Sum_probs=109.6
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCc------ceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSER------AIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~------~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~ 391 (564)
.++|+++|++|+|||||+|+|++.+. ......+++|.+.....+.+++..+.+|||||+.++... .
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~--------~ 90 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRA--------V 90 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHH--------H
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHH--------H
Confidence 48999999999999999999998761 123456778888777778889999999999998544222 2
Q ss_pred hhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--h---h-hccc----CCc
Q 008468 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--N---K-VGNS----FND 461 (564)
Q Consensus 392 ~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~---~-l~~~----~~~ 461 (564)
...+..+|++|+|+|++++...+..+.+..+.. .+.|+|+|+||+|+.+...... + + +... ..+
T Consensus 91 ~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~------~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 164 (482)
T 1wb1_A 91 VSAADIIDLALIVVDAKEGPKTQTGEHMLILDH------FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSS 164 (482)
T ss_dssp HHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH------TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCC
T ss_pred HHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH------cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccce
Confidence 345789999999999999877777666654433 2678899999999986432211 1 1 1111 357
Q ss_pred EEEEeccCCCCHHHHHHHHHHHhh
Q 008468 462 HVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 462 ~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
++++||++|.|+++|+++|.+.+.
T Consensus 165 ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 165 IIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHHhhc
Confidence 999999999999999999999775
No 146
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.70 E-value=7.8e-17 Score=169.59 Aligned_cols=153 Identities=19% Similarity=0.274 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh------hhhcCC-cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEE
Q 008468 288 LNLVMDKIHAMSQDVENALETANYD------KLLQSG-LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEAS 360 (564)
Q Consensus 288 ~~~l~~~l~~l~~~l~~ll~~~~~~------~~~~~~-ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~ 360 (564)
...+..++.++++++.........+ ...+.| .+|+|+|.||||||||+|+|++.. +.++++|+||++...+.
T Consensus 35 ~~~lk~kla~lr~el~~~~~~~~~~~~~~~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~ 113 (376)
T 4a9a_A 35 LGQLKAKLAKLRRELLTSASSGSGGGAGIGFDVARTGVASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGV 113 (376)
T ss_dssp HHHHHHHHHHHHHHHHCC-------CCSBTTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCCCCceEeecCCCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEE
Confidence 3456777777777765432222111 112344 589999999999999999999986 56899999999999999
Q ss_pred EEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEe
Q 008468 361 VTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVIN 440 (564)
Q Consensus 361 ~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~N 440 (564)
+.+++.++.++||||+.+.....+..+ .+....++.||++++|+|++++. .+.+.+..-+......-..+|.++++|
T Consensus 114 ~~~~~~~i~l~D~pGl~~~a~~~~~~g-~~~l~~i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~n 190 (376)
T 4a9a_A 114 IRYKGAKIQMLDLPGIIDGAKDGRGRG-KQVIAVARTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIK 190 (376)
T ss_dssp EEETTEEEEEEECGGGCCC-----CHH-HHHHHHHHHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEE
T ss_pred EEeCCcEEEEEeCCCccCCchhhhHHH-HHHHHHHHhcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhh
Confidence 999999999999999986543333332 33455689999999999998753 333333322221111123456677777
Q ss_pred cCCC
Q 008468 441 KIDC 444 (564)
Q Consensus 441 K~DL 444 (564)
|+|.
T Consensus 191 K~d~ 194 (376)
T 4a9a_A 191 KKEK 194 (376)
T ss_dssp ECSS
T ss_pred Hhhh
Confidence 7775
No 147
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.70 E-value=7.5e-17 Score=159.06 Aligned_cols=166 Identities=18% Similarity=0.170 Sum_probs=106.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceecccc--CeeEEEEEEEEEECCeeeEEEeCCCCCCchh----HHHHhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIA--GTTRDVIEASVTVCGVPVTLLDTAGIRETDD----IVEKIGVER 390 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~--gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~----~ie~~~i~~ 390 (564)
..++|+|+|++|||||||+|+|++... ..+..+ ++|.+.....+.+++..+.||||||+.+... ..+.+ ...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~-~~~ 105 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV-FHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEI-IRC 105 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC-SCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHH-HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc-CccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHH-HHH
Confidence 348999999999999999999999876 344555 6788888888899999999999999875421 11111 111
Q ss_pred hhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh---------hhhcc-cCC
Q 008468 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW---------NKVGN-SFN 460 (564)
Q Consensus 391 ~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---------~~l~~-~~~ 460 (564)
...++..+|++|+|+|+++ .+..+...+..+...... ....|+++|+||+|+........ +.+.+ ...
T Consensus 106 ~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~-~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~ 183 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGE-RARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD 183 (239)
T ss_dssp HHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHH-HHGGGEEEEEECGGGC------------CHHHHHHHHHHSS
T ss_pred HHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhh-hccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC
Confidence 2234567899999999975 344555555554432211 12358999999999876543321 12222 224
Q ss_pred cEEEEeccCC-----CCHHHHHHHHHHHhhc
Q 008468 461 DHVFTCAVTG-----QGIQDLETAIMKIVGL 486 (564)
Q Consensus 461 ~~i~iSAktg-----~GI~eL~~~L~~~l~~ 486 (564)
.++.+++..+ .|+.+|++.+.+.+..
T Consensus 184 ~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 184 RYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 5777766643 6899999988887754
No 148
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.70 E-value=3.6e-16 Score=160.12 Aligned_cols=164 Identities=20% Similarity=0.187 Sum_probs=101.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCc-----ceecccc---CeeEEE--------------------------------
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSER-----AIVTEIA---GTTRDV-------------------------------- 356 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~-----~~vs~~~---gtT~d~-------------------------------- 356 (564)
..++|+|+|.+|||||||+|+|++..+ .+++..| .++++.
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 457999999999999999999999886 4455555 233210
Q ss_pred ------------------EEEE-EEECCeeeEEEeCCCCCCch-----hHHHHhhhhhhhhhhhcCcEEEEEecCC-CCC
Q 008468 357 ------------------IEAS-VTVCGVPVTLLDTAGIRETD-----DIVEKIGVERSEAVALGADVIIMTVSAV-DGW 411 (564)
Q Consensus 357 ------------------~~~~-~~~~g~~i~LiDTpG~~~~~-----~~ie~~~i~~~~~~l~~aD~vl~ViD~s-~~~ 411 (564)
.... ...++..+.||||||+.... ...+......+..++..+|++++|+|.+ .+.
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 0000 11245689999999997421 0111222344567789999999999974 444
Q ss_pred ChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcc---cC-CcEEEEe---ccC---CCCHHHHHHHH
Q 008468 412 TSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGN---SF-NDHVFTC---AVT---GQGIQDLETAI 480 (564)
Q Consensus 412 s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~---~~-~~~i~iS---Akt---g~GI~eL~~~L 480 (564)
...+. .++..+. ..+.|+++|+||+|+........+.+.. .+ ..++++| +.+ +.|+.++++.+
T Consensus 183 ~~~~~~~i~~~~~------~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~ 256 (315)
T 1jwy_B 183 ANSDALQLAKEVD------PEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSE 256 (315)
T ss_dssp TTCSHHHHHHHHC------SSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHH
T ss_pred hhhHHHHHHHHhC------CCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHH
Confidence 33332 4444432 2368999999999998654421222221 11 3455555 445 78999999999
Q ss_pred HHHhhc
Q 008468 481 MKIVGL 486 (564)
Q Consensus 481 ~~~l~~ 486 (564)
.+.+..
T Consensus 257 ~~~~~~ 262 (315)
T 1jwy_B 257 ILYFKN 262 (315)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 988854
No 149
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.69 E-value=3.6e-17 Score=170.63 Aligned_cols=216 Identities=17% Similarity=0.151 Sum_probs=126.4
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhc------CCcceeccccCeeEE--------------------EEEEE---------
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSK------SERAIVTEIAGTTRD--------------------VIEAS--------- 360 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~------~~~~~vs~~~gtT~d--------------------~~~~~--------- 360 (564)
.++..|+++|++|+|||||+|.|++ .+..++...++++.. .+...
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 4568899999999999999999974 333444444444321 00000
Q ss_pred ----------EEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCC
Q 008468 361 ----------VTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTE 430 (564)
Q Consensus 361 ----------~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~ 430 (564)
+.+++.++.||||||+.++... ....+|++++|+|++.+...+.... ..
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~-----------~~~~aD~vl~Vvd~~~~~~~~~l~~--~~-------- 192 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSETE-----------VARMVDCFISLQIAGGGDDLQGIKK--GL-------- 192 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH-----------HHTTCSEEEEEECC------CCCCH--HH--------
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchHHH-----------HHHhCCEEEEEEeCCccHHHHHHHH--hh--------
Confidence 0145788999999999765432 2578999999999976432111100 00
Q ss_pred CCCCEEEEEecCCCCCCCcchh--hhhc------c-----cCCcEEEEeccCCCCHHHHHHHHHHHhhccCCCCCCcccc
Q 008468 431 SSTPMILVINKIDCAPSASNEW--NKVG------N-----SFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWA 497 (564)
Q Consensus 431 ~~~PvIvV~NK~DL~~~~~~~~--~~l~------~-----~~~~~i~iSAktg~GI~eL~~~L~~~l~~~~~~~~~~~~~ 497 (564)
.+.|.++|+||+|+........ +++. . ...+++++||++|.|+++|++.|.+.+.... .+ ...
T Consensus 193 ~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~~---~~-~~~ 268 (341)
T 2p67_A 193 MEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALT---AS-GRL 268 (341)
T ss_dssp HHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHH---HT-THH
T ss_pred hcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHHH---hC-ChH
Confidence 1358899999999975422211 1221 1 1457899999999999999999998764211 01 133
Q ss_pred ccHHHHHHHHHHHHHHHHH-HHHHhhcCChhhHHHHHHHHHHHHhcccCCCCchHHHHhhh
Q 008468 498 VNQRQCEQLMRTKEALVRL-KSSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIF 557 (564)
Q Consensus 498 ~~~r~~~~l~~~~~~L~~~-~~~l~~~l~~el~~~eLr~a~~~L~eitG~~~~e~iL~~IF 557 (564)
.+.|+.+....+.+.+++. ++.+.++++.+.....|++++.. ++++.-...+++++.+.
T Consensus 269 ~~~r~~~~~~~~~e~i~e~l~~~~~~~~~~~~~~~~l~~~v~~-~~~~P~~~~~~~~~~~~ 328 (341)
T 2p67_A 269 QQVRQQQSVEWLRKQTEEEVLNHLFANEDFDRYYRQTLLAVKN-NTLSPRTGLRQLSEFIQ 328 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHh
Confidence 3567777777777766543 33344432222233334443322 34444444577777654
No 150
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.68 E-value=1.5e-16 Score=177.08 Aligned_cols=154 Identities=18% Similarity=0.199 Sum_probs=105.8
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCccee--------cc------ccCeeEEEEEEEEEEC-----CeeeEEEeCCCCCCc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIV--------TE------IAGTTRDVIEASVTVC-----GVPVTLLDTAGIRET 379 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~v--------s~------~~gtT~d~~~~~~~~~-----g~~i~LiDTpG~~~~ 379 (564)
.+|+|+|++|+|||||+++|+.....+. .+ ..|.|.......+.+. +..++||||||+.++
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF 84 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF 84 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence 5899999999999999999987432211 11 2345555444455553 267899999999877
Q ss_pred hhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhccc
Q 008468 380 DDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGNS 458 (564)
Q Consensus 380 ~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~~ 458 (564)
...+. .++..+|++|+|+|++++.+.++...|...... +.|+|+|+||+|+........ +++.+.
T Consensus 85 ~~ev~--------~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~------~ipiIvViNKiDl~~a~~~~v~~ei~~~ 150 (599)
T 3cb4_D 85 SYEVS--------RSLAACEGALLVVDAGQGVEAQTLANCYTAMEM------DLEVVPVLNKIDLPAADPERVAEEIEDI 150 (599)
T ss_dssp HHHHH--------HHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT------TCEEEEEEECTTSTTCCHHHHHHHHHHH
T ss_pred HHHHH--------HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC------CCCEEEeeeccCcccccHHHHHHHHHHH
Confidence 65432 347889999999999999888888777765542 689999999999987543221 333322
Q ss_pred C----CcEEEEeccCCCCHHHHHHHHHHHhhc
Q 008468 459 F----NDHVFTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 459 ~----~~~i~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
+ .+++++||++|.|+++++++|.+.+..
T Consensus 151 lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 151 VGIDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp TCCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred hCCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 2 358999999999999999999998754
No 151
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.68 E-value=2.2e-16 Score=165.25 Aligned_cols=159 Identities=23% Similarity=0.251 Sum_probs=99.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcc-----eeccccC----------------------eeEE--------------
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERA-----IVTEIAG----------------------TTRD-------------- 355 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~-----~vs~~~g----------------------tT~d-------------- 355 (564)
..++|+|+|.+|||||||+|+|++.++. +++..|+ +|++
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 3479999999999999999999998865 4455555 2221
Q ss_pred ---------EEEEEEE-ECCeeeEEEeCCCCCC------chhHHHHhhhhhhhhhhhc-CcEEEEEecCCCCCChhHH-H
Q 008468 356 ---------VIEASVT-VCGVPVTLLDTAGIRE------TDDIVEKIGVERSEAVALG-ADVIIMTVSAVDGWTSEDS-E 417 (564)
Q Consensus 356 ---------~~~~~~~-~~g~~i~LiDTpG~~~------~~~~ie~~~i~~~~~~l~~-aD~vl~ViD~s~~~s~~~~-~ 417 (564)
.....+. .++..+.||||||+.. ..+..+.+. .....++.. .+++++|+|++......+. .
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIR-DMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHH-HHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHH-HHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 0001111 1256799999999865 222222221 123344544 4566777787765444443 2
Q ss_pred HHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcc-------cCCcEEEEeccCCCCHHHHHHHHHH
Q 008468 418 LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGN-------SFNDHVFTCAVTGQGIQDLETAIMK 482 (564)
Q Consensus 418 ~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~-------~~~~~i~iSAktg~GI~eL~~~L~~ 482 (564)
+++.+. ..+.|+++|+||+|+.+......+.+.. .+.+++++||++|.|++++++.+.+
T Consensus 189 i~~~~~------~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEVD------PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHC------TTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHhC------cCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 333322 2468999999999997654311111111 1234678999999999999999877
No 152
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.68 E-value=1.9e-16 Score=150.65 Aligned_cols=155 Identities=20% Similarity=0.249 Sum_probs=111.2
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeee--EEEeCCCCCCchhHHHHhhhhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPV--TLLDTAGIRETDDIVEKIGVERSEAVA 395 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i--~LiDTpG~~~~~~~ie~~~i~~~~~~l 395 (564)
.++|+|+|++|||||||+|+|++..+.. ...+.++.+.....+.++|..+ .+|||+|+..+...+ ..++
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~--------~~~~ 99 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT--------SAYY 99 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCC--------HHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhh--------HHHh
Confidence 4899999999999999999999987542 3445566677777888888655 569999987654332 2346
Q ss_pred hcCcEEEEEecCCCCCChhHHHHHH-HHHhccccCCCCCCEEEEEecCCCCCCCcchh---hhhcc-cCCcEEEEeccCC
Q 008468 396 LGADVIIMTVSAVDGWTSEDSELLN-RIQSNKKSTESSTPMILVINKIDCAPSASNEW---NKVGN-SFNDHVFTCAVTG 470 (564)
Q Consensus 396 ~~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~---~~l~~-~~~~~i~iSAktg 470 (564)
..+|++++|+|.++..++++...|. .+... ...+.|+++|+||+|+........ ..+.. ....++++||+++
T Consensus 100 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~ 176 (191)
T 1oix_A 100 RGAVGALLVYDIAKHLTYENVERWLKELRDH---ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDS 176 (191)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHH---SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHh---cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 7889999999998765555543332 22221 124679999999999965433221 23332 2246889999999
Q ss_pred CCHHHHHHHHHHHh
Q 008468 471 QGIQDLETAIMKIV 484 (564)
Q Consensus 471 ~GI~eL~~~L~~~l 484 (564)
.|++++++.|.+.+
T Consensus 177 ~~v~~l~~~l~~~i 190 (191)
T 1oix_A 177 TNVEAAFQTILTEI 190 (191)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998754
No 153
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.68 E-value=1.1e-16 Score=170.60 Aligned_cols=158 Identities=19% Similarity=0.161 Sum_probs=105.0
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEE--------------EEE-----EECCeeeEEEeCCCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIE--------------ASV-----TVCGVPVTLLDTAGI 376 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~--------------~~~-----~~~g~~i~LiDTpG~ 376 (564)
+..++|+++|++|+|||||+|+|++........+..++..... ... ......+.+|||||+
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 3458999999999999999999998643322222222211000 000 011257899999998
Q ss_pred CCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCC-ChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--h
Q 008468 377 RETDDIVEKIGVERSEAVALGADVIIMTVSAVDGW-TSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--N 453 (564)
Q Consensus 377 ~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~-s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~ 453 (564)
.++... ....+..+|++++|+|++++. ..+..+.+..+... ...|+++|+||+|+.+...... +
T Consensus 86 ~~~~~~--------~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-----~~~~iivviNK~Dl~~~~~~~~~~~ 152 (403)
T 3sjy_A 86 EVLMAT--------MLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-----GVKNLIIVQNKVDVVSKEEALSQYR 152 (403)
T ss_dssp GGGHHH--------HHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-----TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred HHHHHH--------HHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-----CCCCEEEEEECccccchHHHHHHHH
Confidence 765433 234578899999999999987 44444444433322 1258999999999986543221 2
Q ss_pred hhc----c---cCCcEEEEeccCCCCHHHHHHHHHHHhhc
Q 008468 454 KVG----N---SFNDHVFTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 454 ~l~----~---~~~~~i~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
++. . ...+++++||++|.|+++|+++|.+.+..
T Consensus 153 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 153 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 221 1 13579999999999999999999987743
No 154
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.67 E-value=1.1e-17 Score=182.20 Aligned_cols=152 Identities=25% Similarity=0.359 Sum_probs=114.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVAL 396 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~ 396 (564)
..++|+++|++|+|||||+++|.+.... ....+++|.+.....+.+++..+.||||||+.++.... ...+.
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~-~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~--------~~~~~ 73 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVA-SGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMR--------ARGAQ 73 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHS-BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSB--------CSSSB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCc-cccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHH--------HHHHh
Confidence 4578999999999999999999986532 34456777776666667788899999999998775432 23478
Q ss_pred cCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhc------cc---CCcEEEEe
Q 008468 397 GADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVG------NS---FNDHVFTC 466 (564)
Q Consensus 397 ~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~------~~---~~~~i~iS 466 (564)
.+|++++|+|++++...+..+.+..+.. .+.|+|+|+||+|+........ ..+. +. ..+++++|
T Consensus 74 ~aD~aILVVda~~g~~~qT~e~l~~~~~------~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vS 147 (501)
T 1zo1_I 74 ATDIVVLVVAADDGVMPQTIEAIQHAKA------AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVS 147 (501)
T ss_dssp SCSSEEEEEETTTBSCTTTHHHHHHHHH------TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECC
T ss_pred hCCEEEEEeecccCccHHHHHHHHHHHh------cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEe
Confidence 8999999999999877777776665543 2689999999999975422111 1111 11 14799999
Q ss_pred ccCCCCHHHHHHHHHHH
Q 008468 467 AVTGQGIQDLETAIMKI 483 (564)
Q Consensus 467 Aktg~GI~eL~~~L~~~ 483 (564)
|++|.|+++|+++|...
T Consensus 148 AktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 148 AKAGTGIDELLDAILLQ 164 (501)
T ss_dssp TTTCTTCTTHHHHTTTT
T ss_pred eeeccCcchhhhhhhhh
Confidence 99999999999998753
No 155
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.67 E-value=1.8e-16 Score=176.24 Aligned_cols=154 Identities=19% Similarity=0.266 Sum_probs=107.3
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCccee--------cc------ccCeeEEEEEEEEEEC---C--eeeEEEeCCCCCCc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIV--------TE------IAGTTRDVIEASVTVC---G--VPVTLLDTAGIRET 379 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~v--------s~------~~gtT~d~~~~~~~~~---g--~~i~LiDTpG~~~~ 379 (564)
.+|+|+|++|+|||||+++|+.....+. .+ ..|.|.......+.+. + ..++||||||+.++
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF 86 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF 86 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH
Confidence 6899999999999999999986422111 01 1233333222333332 2 67889999999887
Q ss_pred hhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhccc
Q 008468 380 DDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGNS 458 (564)
Q Consensus 380 ~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~~ 458 (564)
...+. .++..+|++|+|+|++++.+.++...|..... .+.|+|+|+||+|+........ +++.+.
T Consensus 87 ~~ev~--------r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~------~~ipiIvviNKiDl~~a~~~~v~~el~~~ 152 (600)
T 2ywe_A 87 SYEVS--------RALAACEGALLLIDASQGIEAQTVANFWKAVE------QDLVIIPVINKIDLPSADVDRVKKQIEEV 152 (600)
T ss_dssp HHHHH--------HHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH------TTCEEEEEEECTTSTTCCHHHHHHHHHHT
T ss_pred HHHHH--------HHHHhCCEEEEEEECCCCccHHHHHHHHHHHH------CCCCEEEEEeccCccccCHHHHHHHHHHh
Confidence 55432 34788999999999999988888877766554 2689999999999986543222 333332
Q ss_pred C----CcEEEEeccCCCCHHHHHHHHHHHhhc
Q 008468 459 F----NDHVFTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 459 ~----~~~i~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
+ .+++++||++|.|+++++++|.+.+..
T Consensus 153 lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 153 LGLDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp SCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred hCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 2 248999999999999999999998754
No 156
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.66 E-value=9.1e-17 Score=165.61 Aligned_cols=156 Identities=13% Similarity=0.099 Sum_probs=103.2
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchh-HHHHhhhhhhhhhhhcC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDD-IVEKIGVERSEAVALGA 398 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~-~ie~~~i~~~~~~l~~a 398 (564)
||+++|..|||||||++++.+..........+.|.......+. ...++.||||||+.++.. .+ ....+++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l------~~~~yyr~a 73 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSY------DSERLFKSV 73 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSH------HHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhh------hhhhhccCC
Confidence 6899999999999999998865432111111222222112222 347889999999988742 11 123568999
Q ss_pred cEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCc-------chh---hhhccc-----CCcEE
Q 008468 399 DVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS-------NEW---NKVGNS-----FNDHV 463 (564)
Q Consensus 399 D~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~-------~~~---~~l~~~-----~~~~i 463 (564)
+++|+|||+++. .......|..+........++.|+++|+||+|+.+... ... +++++. ...++
T Consensus 74 ~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~ 152 (331)
T 3r7w_B 74 GALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFY 152 (331)
T ss_dssp SEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEE
T ss_pred CEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEE
Confidence 999999999987 44555555554332211235789999999999986532 111 344442 35689
Q ss_pred EEeccCCCCHHHHHHHHHHHh
Q 008468 464 FTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 464 ~iSAktg~GI~eL~~~L~~~l 484 (564)
++||++ .+|.+.|..+.+.+
T Consensus 153 eTSAkd-~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 153 LTSIFD-HSIYEAFSRIVQKL 172 (331)
T ss_dssp CCCSSS-SHHHHHHHHHHTTS
T ss_pred EeccCC-CcHHHHHHHHHHHH
Confidence 999998 58999998887654
No 157
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.66 E-value=1.7e-17 Score=165.82 Aligned_cols=167 Identities=12% Similarity=0.175 Sum_probs=99.7
Q ss_pred cCCcEEEEEcCC---------CCChhHHHHHhhcCC-cceeccccCee--EEEEEEE----------------EEECCee
Q 008468 316 QSGLQIAIVGRP---------NVGKSSLLNAWSKSE-RAIVTEIAGTT--RDVIEAS----------------VTVCGVP 367 (564)
Q Consensus 316 ~~~ikI~IvG~~---------nvGKSSLlN~L~~~~-~~~vs~~~gtT--~d~~~~~----------------~~~~g~~ 367 (564)
...+||+|+|.+ |||||||+|+|++.. ......+.+|| .+..... +.-....
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 445899999999 999999999999842 11233333333 2211100 1112356
Q ss_pred eEEEe------CCCCCCchhH-----HHHhhhh----hhhhhhh---------------------cCcEEEEEecCCCC-
Q 008468 368 VTLLD------TAGIRETDDI-----VEKIGVE----RSEAVAL---------------------GADVIIMTVSAVDG- 410 (564)
Q Consensus 368 i~LiD------TpG~~~~~~~-----ie~~~i~----~~~~~l~---------------------~aD~vl~ViD~s~~- 410 (564)
+.||| |||....... ....+.+ ....++. ++|++|+|+|++++
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~ 176 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM 176 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence 77887 6665433221 0010000 0011122 69999999999997
Q ss_pred -CChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh-hhhcc--cCCcEEEEeccCCCCHHHHHHHHHHHh
Q 008468 411 -WTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW-NKVGN--SFNDHVFTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 411 -~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-~~l~~--~~~~~i~iSAktg~GI~eL~~~L~~~l 484 (564)
.++.....|.. +.... ...+.|+++|+||+|+......+. +++.. ...+++++||++|.|+++++++|.+.+
T Consensus 177 ~~s~~~~~~~l~~i~~~~--~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 177 NRNFDDQLKFVSNLYNQL--AKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp --CHHHHHHHHHHHHHHH--HHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHh--ccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 77776644432 32211 113689999999999965433322 33332 246899999999999999999998865
No 158
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.66 E-value=3.1e-16 Score=165.28 Aligned_cols=141 Identities=14% Similarity=0.184 Sum_probs=106.6
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCc
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGAD 399 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD 399 (564)
+|+++|++|+|||||+|+|+ ..++|.+.....+.+++..+.||||||+.++.... ...+..+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~--------~~~~~~aD 85 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSL--------ITALNISD 85 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHH--------HHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHH--------HHHHHHCC
Confidence 89999999999999999998 34566666666777888899999999998774332 23468899
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCE-EEEEe-cCCCCCCCcchh-----hhhcc----cCCcEEE--Ee
Q 008468 400 VIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPM-ILVIN-KIDCAPSASNEW-----NKVGN----SFNDHVF--TC 466 (564)
Q Consensus 400 ~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~Pv-IvV~N-K~DL~~~~~~~~-----~~l~~----~~~~~i~--iS 466 (564)
++|+|+| +.+...+..+.+..+... +.|. |+|+| |+|+ +...... .++.. ...++++ +|
T Consensus 86 ~ailVvd-~~g~~~qt~e~~~~~~~~------~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~S 157 (370)
T 2elf_A 86 IAVLCIP-PQGLDAHTGECIIALDLL------GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTN 157 (370)
T ss_dssp EEEEEEC-TTCCCHHHHHHHHHHHHT------TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCC
T ss_pred EEEEEEc-CCCCcHHHHHHHHHHHHc------CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 9999999 777766666655544332 5677 99999 9999 4322111 22222 1257999 99
Q ss_pred ccC---CCCHHHHHHHHHHHhh
Q 008468 467 AVT---GQGIQDLETAIMKIVG 485 (564)
Q Consensus 467 Akt---g~GI~eL~~~L~~~l~ 485 (564)
|++ |.|+++|++.|.+.+.
T Consensus 158 A~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 158 KSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp TTSSSTTTTHHHHHHHHHHHHH
T ss_pred cccCcCCCCHHHHHHHHHhhcc
Confidence 999 9999999999988763
No 159
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.66 E-value=5.3e-17 Score=170.19 Aligned_cols=175 Identities=21% Similarity=0.235 Sum_probs=108.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhc------CCcceeccccCeeE-------E------------EEE-------------
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSK------SERAIVTEIAGTTR-------D------------VIE------------- 358 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~------~~~~~vs~~~gtT~-------d------------~~~------------- 358 (564)
...+|+|+|.+|||||||+++|.. .....+...|.++. + ...
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 457899999999999999999964 22222222222221 0 000
Q ss_pred -------EEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCC
Q 008468 359 -------ASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTES 431 (564)
Q Consensus 359 -------~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~ 431 (564)
..+...+..+.||||||+..... ..+..+|++++|+|+.......... . ...
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~~~~-----------~~~~~aD~vl~V~d~~~~~~~~~l~------~----~~~ 216 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQSEV-----------AVANMVDTFVLLTLARTGDQLQGIK------K----GVL 216 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSSHHH-----------HHHTTCSEEEEEEESSTTCTTTTCC------T----TSG
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCcHHH-----------HHHHhCCEEEEEECCCCCccHHHHH------H----hHh
Confidence 00122567899999999876432 2258899999999987654332111 0 012
Q ss_pred CCCEEEEEecCCCCCCCcchh--hhhcc-----------cCCcEEEEeccCCCCHHHHHHHHHHHhhccCCCCCCccccc
Q 008468 432 STPMILVINKIDCAPSASNEW--NKVGN-----------SFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGRRWAV 498 (564)
Q Consensus 432 ~~PvIvV~NK~DL~~~~~~~~--~~l~~-----------~~~~~i~iSAktg~GI~eL~~~L~~~l~~~~~~~~~~~~~~ 498 (564)
+.|+++|+||+|+........ +++.. ...+++++||++|.|+++|+++|.+.+.... +.....
T Consensus 217 ~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~~----~~~~~~ 292 (355)
T 3p32_A 217 ELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVLT----GAGEFD 292 (355)
T ss_dssp GGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHHH----HTTHHH
T ss_pred hcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHhh----cCchHH
Confidence 468999999999864322211 12211 1367999999999999999999999875421 111233
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 008468 499 NQRQCEQLMRTKEALVRL 516 (564)
Q Consensus 499 ~~r~~~~l~~~~~~L~~~ 516 (564)
+.|+.+.+..+.+.+.+.
T Consensus 293 ~~r~~~~~~~~~e~i~e~ 310 (355)
T 3p32_A 293 ARRRDQQVDWTWQLVRDA 310 (355)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466666666666665443
No 160
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.66 E-value=1.3e-16 Score=173.97 Aligned_cols=147 Identities=18% Similarity=0.221 Sum_probs=101.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcce------------------------------eccccCeeEEEEEEEEEECCe
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAI------------------------------VTEIAGTTRDVIEASVTVCGV 366 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~------------------------------vs~~~gtT~d~~~~~~~~~g~ 366 (564)
..+||+++|.+|+|||||+|+|++....+ ....+|+|.+.....+..++.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 44899999999999999999998762211 122357788887888888899
Q ss_pred eeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCC-------hhHHHHHHHHHhccccCCCCCCEEEEE
Q 008468 367 PVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWT-------SEDSELLNRIQSNKKSTESSTPMILVI 439 (564)
Q Consensus 367 ~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s-------~~~~~~l~~l~~~~~~~~~~~PvIvV~ 439 (564)
.+.||||||+.++... ...++..+|++|+|+|++++.+ .+..+.+..+... ...|+|+|+
T Consensus 112 ~~~iiDTPG~~~f~~~--------~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-----~~~~iIvvi 178 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPN--------AIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-----GIHNLIIAM 178 (483)
T ss_dssp EEEEECCCCCGGGHHH--------HHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-----TCCCEEEEE
T ss_pred eEEEEECCCcHHHHHH--------HHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-----CCCcEEEEE
Confidence 9999999999776433 2345889999999999998733 2333333332221 124699999
Q ss_pred ecCCCCCCCcchh----hhhcc---------cCCcEEEEeccCCCCHHHH
Q 008468 440 NKIDCAPSASNEW----NKVGN---------SFNDHVFTCAVTGQGIQDL 476 (564)
Q Consensus 440 NK~DL~~~~~~~~----~~l~~---------~~~~~i~iSAktg~GI~eL 476 (564)
||+|+.+...... +++.. ...+++++||++|.|++++
T Consensus 179 NK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 179 NKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred ECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 9999976332211 11111 1347899999999999864
No 161
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.65 E-value=3.5e-16 Score=168.25 Aligned_cols=147 Identities=19% Similarity=0.163 Sum_probs=101.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceec----------cc----------------------cCeeEEEEEEEEEEC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVT----------EI----------------------AGTTRDVIEASVTVC 364 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs----------~~----------------------~gtT~d~~~~~~~~~ 364 (564)
..++|+++|++|+|||||+|+|++....+.. .. .|.|.+.....+..+
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 3489999999999999999999876532211 12 234555555556667
Q ss_pred CeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCC-CEEEEEecCC
Q 008468 365 GVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESST-PMILVINKID 443 (564)
Q Consensus 365 g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~-PvIvV~NK~D 443 (564)
+..+.||||||+.++.... ..++..+|++|+|+|++++...+..+.+..+... +. |+|+|+||+|
T Consensus 103 ~~~~~iiDtpGh~~f~~~~--------~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~------~~~~iIvviNK~D 168 (434)
T 1zun_B 103 KRKFIIADTPGHEQYTRNM--------ATGASTCDLAIILVDARYGVQTQTRRHSYIASLL------GIKHIVVAINKMD 168 (434)
T ss_dssp SEEEEEEECCCSGGGHHHH--------HHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT------TCCEEEEEEECTT
T ss_pred CceEEEEECCChHHHHHHH--------HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc------CCCeEEEEEEcCc
Confidence 8899999999997764332 2347899999999999998877766655544322 33 5999999999
Q ss_pred CCCCCcch----h---hhhcc-cC-----CcEEEEeccCCCCHHHHH
Q 008468 444 CAPSASNE----W---NKVGN-SF-----NDHVFTCAVTGQGIQDLE 477 (564)
Q Consensus 444 L~~~~~~~----~---~~l~~-~~-----~~~i~iSAktg~GI~eL~ 477 (564)
+.+..... . .++.. .. .+++++||++|.|+++++
T Consensus 169 l~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 169 LNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred CCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 98642211 0 12211 11 468999999999998843
No 162
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.65 E-value=9.6e-16 Score=163.57 Aligned_cols=157 Identities=20% Similarity=0.149 Sum_probs=98.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcce--eccccCeeEEEEEEEEEE---------------C--C------eeeEEE
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAI--VTEIAGTTRDVIEASVTV---------------C--G------VPVTLL 371 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~--vs~~~gtT~d~~~~~~~~---------------~--g------~~i~Li 371 (564)
..++|+++|++|+|||||+++|++..... ....+|+|.+.......+ + + ..+.||
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 45899999999999999999999754221 122355565433222211 1 1 578999
Q ss_pred eCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCC-ChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcc
Q 008468 372 DTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGW-TSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450 (564)
Q Consensus 372 DTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~-s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~ 450 (564)
||||+.++... ....+..+|++|+|+|++++. ..+..+.+..+... ...|+++|+||+|+.+....
T Consensus 87 DtPGh~~f~~~--------~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l-----~~~~iivv~NK~Dl~~~~~~ 153 (408)
T 1s0u_A 87 DSPGHETLMAT--------MLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL-----GIDKIIIVQNKIDLVDEKQA 153 (408)
T ss_dssp ECSSHHHHHHH--------HHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-----TCCCEEEEEECTTSSCTTTT
T ss_pred ECCCHHHHHHH--------HHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc-----CCCeEEEEEEccCCCCHHHH
Confidence 99997554322 223366789999999999876 55555555443322 12489999999999765432
Q ss_pred h--h---hhhcc----cCCcEEEEeccCCCCHHHHHHHHHHHhhc
Q 008468 451 E--W---NKVGN----SFNDHVFTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 451 ~--~---~~l~~----~~~~~i~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
. . .++.. ...+++++||++|.|+++|+++|.+.+..
T Consensus 154 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 154 EENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp TTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 1 1 22222 23579999999999999999999987753
No 163
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.65 E-value=1.4e-16 Score=169.72 Aligned_cols=155 Identities=19% Similarity=0.169 Sum_probs=111.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC--------Cccee--------ccccCeeEEEEEEEEEECCeeeEEEeCCCCCCch
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS--------ERAIV--------TEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETD 380 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~--------~~~~v--------s~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~ 380 (564)
..++|+++|++|+|||||+|+|++. .+... ....++|.+.....+..++..+.||||||+.++.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~ 89 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI 89 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHH
Confidence 4589999999999999999999973 11100 1145677777666677778899999999998764
Q ss_pred hHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCC-EEEEEecCCCCCCCcc-h-----hh
Q 008468 381 DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTP-MILVINKIDCAPSASN-E-----WN 453 (564)
Q Consensus 381 ~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~P-vIvV~NK~DL~~~~~~-~-----~~ 453 (564)
.. ...++..+|++|+|+|++++...+..+.+..+... +.| +++|+||+|+...... + ..
T Consensus 90 ~~--------~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~------~ip~iivviNK~Dl~~~~~~~~~~~~~~~ 155 (405)
T 2c78_A 90 KN--------MITGAAQMDGAILVVSAADGPMPQTREHILLARQV------GVPYIVVFMNKVDMVDDPELLDLVEMEVR 155 (405)
T ss_dssp HH--------HHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT------TCCCEEEEEECGGGCCCHHHHHHHHHHHH
T ss_pred HH--------HHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc------CCCEEEEEEECccccCcHHHHHHHHHHHH
Confidence 32 23457899999999999998877777666655432 578 8899999999852211 1 01
Q ss_pred hhcc------cCCcEEEEeccCCCC------------------HHHHHHHHHHHhh
Q 008468 454 KVGN------SFNDHVFTCAVTGQG------------------IQDLETAIMKIVG 485 (564)
Q Consensus 454 ~l~~------~~~~~i~iSAktg~G------------------I~eL~~~L~~~l~ 485 (564)
++.. ...+++++||++|.| +++|++.|.+.+.
T Consensus 156 ~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 156 DLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 1111 125799999999987 7777777777654
No 164
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.65 E-value=3.4e-16 Score=166.50 Aligned_cols=155 Identities=17% Similarity=0.145 Sum_probs=111.8
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCC-------cc--------eeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhH
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSE-------RA--------IVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDI 382 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~-------~~--------~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ 382 (564)
.++|+++|++|+|||||+++|++.. +. ......++|.+.....+..++..+.||||||+.++...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 4899999999999999999999741 00 01124577887766666667889999999998654322
Q ss_pred HHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCC-EEEEEecCCCCCCCcc-h-----hhhh
Q 008468 383 VEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTP-MILVINKIDCAPSASN-E-----WNKV 455 (564)
Q Consensus 383 ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~P-vIvV~NK~DL~~~~~~-~-----~~~l 455 (564)
...++..+|++|+|+|++++...+..+.+..+.. .+.| +++|+||+|+...... + ..++
T Consensus 83 --------~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~------~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~ 148 (397)
T 1d2e_A 83 --------MITGTAPLDGCILVVAANDGPMPQTREHLLLARQ------IGVEHVVVYVNKADAVQDSEMVELVELEIREL 148 (397)
T ss_dssp --------HHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH------TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHH
T ss_pred --------HHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCeEEEEEECcccCCCHHHHHHHHHHHHHH
Confidence 2345789999999999999888777777755443 2578 6899999999752211 1 0112
Q ss_pred cc--c----CCcEEEEeccCCCC----------HHHHHHHHHHHhhc
Q 008468 456 GN--S----FNDHVFTCAVTGQG----------IQDLETAIMKIVGL 486 (564)
Q Consensus 456 ~~--~----~~~~i~iSAktg~G----------I~eL~~~L~~~l~~ 486 (564)
.. . ..+++++||++|.| +++|++.|.+.+..
T Consensus 149 l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 149 LTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp HHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred HHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 11 1 25899999999764 89999999887653
No 165
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.64 E-value=6.6e-16 Score=164.89 Aligned_cols=157 Identities=20% Similarity=0.146 Sum_probs=106.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcce--eccccCeeEEEEEEEEEE---------------C--------CeeeEEE
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAI--VTEIAGTTRDVIEASVTV---------------C--------GVPVTLL 371 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~--vs~~~gtT~d~~~~~~~~---------------~--------g~~i~Li 371 (564)
..++|+++|++|+|||||+++|++..... ....+++|.+.......+ + ...+.||
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 34899999999999999999999754221 122356666543332222 1 1678999
Q ss_pred eCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCC-ChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcc
Q 008468 372 DTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGW-TSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450 (564)
Q Consensus 372 DTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~-s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~ 450 (564)
||||+.++... ....+..+|++|+|+|++++. ..+..+.+..+... ...|+++|+||+|+.+....
T Consensus 89 DtPGh~~f~~~--------~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-----~~~~iivviNK~Dl~~~~~~ 155 (410)
T 1kk1_A 89 DAPGHEALMTT--------MLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-----GQKNIIIAQNKIELVDKEKA 155 (410)
T ss_dssp ECSSHHHHHHH--------HHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-----TCCCEEEEEECGGGSCHHHH
T ss_pred ECCChHHHHHH--------HHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-----CCCcEEEEEECccCCCHHHH
Confidence 99998554322 223467889999999999876 55555555444322 12579999999999865321
Q ss_pred hh-----hhhcc----cCCcEEEEeccCCCCHHHHHHHHHHHhhc
Q 008468 451 EW-----NKVGN----SFNDHVFTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 451 ~~-----~~l~~----~~~~~i~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
.. .++.. ...+++++||++|.|+++|+++|.+.+..
T Consensus 156 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 156 LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 11 12221 23579999999999999999999987653
No 166
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.1e-16 Score=178.91 Aligned_cols=148 Identities=18% Similarity=0.227 Sum_probs=105.4
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceecc------------------------------ccCeeEEEEEEEEEECC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTE------------------------------IAGTTRDVIEASVTVCG 365 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~------------------------------~~gtT~d~~~~~~~~~g 365 (564)
+..++|+++|++|+|||||+|+|++....+..+ .+|+|.+.....+..++
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 456899999999999999999999875443322 36888888888888899
Q ss_pred eeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCC-------CChhHHHHHHHHHhccccCCCCCCEEEE
Q 008468 366 VPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDG-------WTSEDSELLNRIQSNKKSTESSTPMILV 438 (564)
Q Consensus 366 ~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~-------~s~~~~~~l~~l~~~~~~~~~~~PvIvV 438 (564)
..+.||||||+.++... ...++..+|++|+|+|++++ ...+..+.+..+... ...|+|+|
T Consensus 245 ~~~~iiDTPG~e~f~~~--------~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l-----gi~~iIVV 311 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPN--------AIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-----GIHNLIIA 311 (611)
T ss_dssp CEEEEEECCSSSCHHHH--------HTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT-----TCCEEEEE
T ss_pred ceEEEEECCCCcccHHH--------HHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc-----CCCeEEEE
Confidence 99999999999775432 33457899999999999874 122333333333221 12359999
Q ss_pred EecCCCCCCCcchh----hhhcc---------cCCcEEEEeccCCCCHHHH
Q 008468 439 INKIDCAPSASNEW----NKVGN---------SFNDHVFTCAVTGQGIQDL 476 (564)
Q Consensus 439 ~NK~DL~~~~~~~~----~~l~~---------~~~~~i~iSAktg~GI~eL 476 (564)
+||+|+.+...... +++.. ...+++++||++|.|++++
T Consensus 312 vNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 312 MNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp EECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred EecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 99999986332111 11111 1357999999999999876
No 167
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.64 E-value=1.2e-15 Score=153.61 Aligned_cols=130 Identities=17% Similarity=0.201 Sum_probs=93.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHh--hhhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKI--GVERSEAV 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~--~i~~~~~~ 394 (564)
..++|+++|.+|+|||||+|+|++..+..+++.+++|.+.....+..++..+.+|||||+.++....+.. .+.+ ...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~-~~~ 116 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKS-FLL 116 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHH-HTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHH-Hhh
Confidence 3589999999999999999999999877788889999888877888899999999999997654211111 0111 112
Q ss_pred hhcCcEEEEEecCCC-CCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCC
Q 008468 395 ALGADVIIMTVSAVD-GWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448 (564)
Q Consensus 395 l~~aD~vl~ViD~s~-~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~ 448 (564)
...+|++++|+|++. .....+.+++..+..... .....|+++|+||+|+.+..
T Consensus 117 ~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~-~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFG-KGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHC-GGGGGGEEEEEECCSCCCGG
T ss_pred cCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhC-cccccCEEEEEECcccCCcC
Confidence 357999999988865 333344455555543321 01126999999999997654
No 168
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.64 E-value=9.6e-16 Score=153.66 Aligned_cols=129 Identities=19% Similarity=0.236 Sum_probs=93.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhh--h
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEA--V 394 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~--~ 394 (564)
+.++|+++|.+|||||||+|+|++.+...+++++++|.+.....+.+++..+.||||||+.++....+... ..... .
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~-~~i~~~l~ 113 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQAL-ELIKGFLV 113 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHH-HHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHH-HHHHHHHh
Confidence 45899999999999999999999998877888999999888888899999999999999976543222110 00111 1
Q ss_pred hhcCcEEEEEecCCCC-CChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCC
Q 008468 395 ALGADVIIMTVSAVDG-WTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~-~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~ 447 (564)
...+|++++|+|++.. ....+..++..+...... ....|+++|+||+|+.+.
T Consensus 114 ~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGK-EIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECTTCCCS
T ss_pred cCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhch-hhhcCEEEEEeCcccCCC
Confidence 2378999999888653 333344555555443211 112489999999999644
No 169
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.2e-16 Score=150.99 Aligned_cols=145 Identities=22% Similarity=0.183 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcCCcEEEEEcCCCCChhHHHHHhhcCCcce--eccccCeeEEEEEEEEEECCeeeEE
Q 008468 293 DKIHAMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAI--VTEIAGTTRDVIEASVTVCGVPVTL 370 (564)
Q Consensus 293 ~~l~~l~~~l~~ll~~~~~~~~~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~--vs~~~gtT~d~~~~~~~~~g~~i~L 370 (564)
+.+..+.+++.+++....... ....++|+++|++|||||||+|+|++..+.. ++..++++.+ +.+..+.+
T Consensus 24 ~~~~~l~~~l~~~~~~~~~~~-~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~l 95 (193)
T 2ged_A 24 RKISQWREWIDEKLGGGSGGG-GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-------YDGSGVTL 95 (193)
T ss_dssp TBCHHHHHHHHHHC---------CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C-------CCCTTCSE
T ss_pred HHHHHHHHHHHHHHHhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee-------ecCCeEEE
Confidence 344455555555544333222 2456899999999999999999999987432 1223333322 26778999
Q ss_pred EeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCC-CCCChhHH-HHHHHHHhcccc-CCCCCCEEEEEecCCCCCC
Q 008468 371 LDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAV-DGWTSEDS-ELLNRIQSNKKS-TESSTPMILVINKIDCAPS 447 (564)
Q Consensus 371 iDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s-~~~s~~~~-~~l~~l~~~~~~-~~~~~PvIvV~NK~DL~~~ 447 (564)
|||||...+...+..+ ....+..+|++++|+|++ +..+.... ..+..+...... ...+.|+++|+||+|+...
T Consensus 96 ~Dt~G~~~~~~~~~~~----~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 96 VDFPGHVKLRYKLSDY----LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp EEETTCCBSSCCHHHH----HHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred EECCCCchHHHHHHHH----HHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 9999998765443322 122245599999999998 44333333 223333222111 2347899999999999765
Q ss_pred Cc
Q 008468 448 AS 449 (564)
Q Consensus 448 ~~ 449 (564)
..
T Consensus 172 ~~ 173 (193)
T 2ged_A 172 RP 173 (193)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 170
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.63 E-value=1.2e-16 Score=169.96 Aligned_cols=90 Identities=26% Similarity=0.341 Sum_probs=49.9
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEE---------------------ECC---eeeEEEeCC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVT---------------------VCG---VPVTLLDTA 374 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~---------------------~~g---~~i~LiDTp 374 (564)
++|+|+|.||||||||+|+|++.. +.++++|+||++....... +++ .++.|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 589999999999999999999987 6788999999887665432 132 578999999
Q ss_pred CCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCC
Q 008468 375 GIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDG 410 (564)
Q Consensus 375 G~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~ 410 (564)
|+.......+..+ .....+++.+|++++|+|++++
T Consensus 80 G~~~~a~~~~~l~-~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 80 GLVPGAHEGRGLG-NKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ----------------CCCSSTTCSEEEEEEETTCC
T ss_pred CcccchhhhhhHH-HHHHHHHhcCCEEEEEEecccc
Confidence 9965322111111 1223457899999999999875
No 171
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.62 E-value=2.7e-16 Score=151.85 Aligned_cols=146 Identities=21% Similarity=0.129 Sum_probs=88.0
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCccee--ccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIV--TEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEA 393 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~v--s~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~ 393 (564)
...++|+++|++|||||||+|+|++..+... +..+.++.+ +.+..+.+|||||+..+...+..+. ..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~Dt~G~~~~~~~~~~~~----~~ 78 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-------YDGSGVTLVDFPGHVKLRYKLSDYL----KT 78 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT-------GGGSSCEEEECCCCGGGTHHHHHHH----HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE-------eeCceEEEEECCCcHHHHHHHHHHH----Hh
Confidence 3458999999999999999999999875321 122222222 2567899999999987655543321 11
Q ss_pred hhhcCcEEEEEecCC-CCCChhHH-HHHHHHHhcccc-CCCCCCEEEEEecCCCCCCCcchh---------hhhcc-cCC
Q 008468 394 VALGADVIIMTVSAV-DGWTSEDS-ELLNRIQSNKKS-TESSTPMILVINKIDCAPSASNEW---------NKVGN-SFN 460 (564)
Q Consensus 394 ~l~~aD~vl~ViD~s-~~~s~~~~-~~l~~l~~~~~~-~~~~~PvIvV~NK~DL~~~~~~~~---------~~l~~-~~~ 460 (564)
....+|++++|+|++ +..++.+. ..+..+...... ...+.|+++|+||+|+........ ..+.. ...
T Consensus 79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 158 (218)
T 1nrj_B 79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKK 158 (218)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 123489999999999 65565544 333333322111 234789999999999987655331 11211 124
Q ss_pred cEEEEeccCCCC
Q 008468 461 DHVFTCAVTGQG 472 (564)
Q Consensus 461 ~~i~iSAktg~G 472 (564)
+++++||++|.+
T Consensus 159 ~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 159 SLNEVERKINEE 170 (218)
T ss_dssp HHHC--------
T ss_pred cccccccccccc
Confidence 678999998865
No 172
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.62 E-value=2.8e-17 Score=183.27 Aligned_cols=154 Identities=19% Similarity=0.229 Sum_probs=85.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceec------------------------------cccCeeEEEEEEEEEECCe
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVT------------------------------EIAGTTRDVIEASVTVCGV 366 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs------------------------------~~~gtT~d~~~~~~~~~g~ 366 (564)
..++|+|+|++|+|||||+|+|++....+.. ..+|+|++.....+..++.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 3478999999999999999999754322221 1468899988888888899
Q ss_pred eeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCC-------ChhHHHHHHHHHhccccCCCCCC-EEEE
Q 008468 367 PVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGW-------TSEDSELLNRIQSNKKSTESSTP-MILV 438 (564)
Q Consensus 367 ~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~-------s~~~~~~l~~l~~~~~~~~~~~P-vIvV 438 (564)
.+.||||||+.++... ....+..+|++|+|+|++++. ..+..+.+..+... +.| +|+|
T Consensus 256 ~i~iiDTPGh~~f~~~--------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l------gip~iIvv 321 (592)
T 3mca_A 256 IYEIGDAPGHRDFISG--------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL------GISEIVVS 321 (592)
T ss_dssp ---CCEEESSSEEEEE--------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS------SCCCEEEE
T ss_pred EEEEEECCChHHHHHH--------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc------CCCeEEEE
Confidence 9999999999876332 234478899999999998753 44555555444332 455 9999
Q ss_pred EecCCCCCCCcchh-------hhhc-c--cC----CcEEEEeccCCCCHH--------------HHHHHHHHHh
Q 008468 439 INKIDCAPSASNEW-------NKVG-N--SF----NDHVFTCAVTGQGIQ--------------DLETAIMKIV 484 (564)
Q Consensus 439 ~NK~DL~~~~~~~~-------~~l~-~--~~----~~~i~iSAktg~GI~--------------eL~~~L~~~l 484 (564)
+||+|+........ ..+. . .+ .+++++||++|.|+. .|++.|.+..
T Consensus 322 iNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 322 VNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp EECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred EeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 99999976322111 1111 1 11 268999999999998 6777776644
No 173
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.62 E-value=7.9e-16 Score=171.28 Aligned_cols=153 Identities=24% Similarity=0.318 Sum_probs=106.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceecccc-CeeEEEEEEEEEE------------------CCeeeEEEeCCCCC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIA-GTTRDVIEASVTV------------------CGVPVTLLDTAGIR 377 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~-gtT~d~~~~~~~~------------------~g~~i~LiDTpG~~ 377 (564)
..++|+|+|++|+|||||+|+|++.... ...+ ++|.+.....+.+ ....+.||||||+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~--~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVA--SREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHS--CC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCc--cccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 3579999999999999999999986432 2222 3333322222221 11258999999998
Q ss_pred CchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcc-------
Q 008468 378 ETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN------- 450 (564)
Q Consensus 378 ~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~------- 450 (564)
++....+ .++..+|++|+|+|++++...+..+.|..+.. .+.|+++|+||+|+.+....
T Consensus 82 ~F~~~~~--------r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~------~~vPiIVViNKiDl~~~~~~~~~~~~~ 147 (594)
T 1g7s_A 82 AFTTLRK--------RGGALADLAILIVDINEGFKPQTQEALNILRM------YRTPFVVAANKIDRIHGWRVHEGRPFM 147 (594)
T ss_dssp CCTTSBC--------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSTTCCCCTTCCHH
T ss_pred HHHHHHH--------HHHhhCCEEEEEEECCCCccHhHHHHHHHHHH------cCCeEEEEecccccccccccccCCchH
Confidence 7754422 34688999999999999888888777776554 36899999999999753210
Q ss_pred -------h------------h-hhhcc---------------cCCcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 451 -------E------------W-NKVGN---------------SFNDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 451 -------~------------~-~~l~~---------------~~~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
. . +.+.+ ...+++++||++|.|+++|+++|...+.
T Consensus 148 e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 148 ETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0 0 11111 1136899999999999999999987653
No 174
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.62 E-value=2.3e-15 Score=144.29 Aligned_cols=163 Identities=17% Similarity=0.195 Sum_probs=99.7
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcCC-cceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhH---HHHhh--h
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKSE-RAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDI---VEKIG--V 388 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~~-~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~---ie~~~--i 388 (564)
...+.+|+|+|++|||||||+|+|++.. ...+.+.+|+|.... .+.+++ .+.+|||||+...... .+.+. +
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~--~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN--LFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEE--EEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE--EEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 3567899999999999999999999976 344456677766432 334444 7889999998642100 01110 1
Q ss_pred hhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcch----h-hhhc-c--cCC
Q 008468 389 ERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE----W-NKVG-N--SFN 460 (564)
Q Consensus 389 ~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~----~-~~l~-~--~~~ 460 (564)
.........+|.+++|+|++.+.+..+.+....+.. .+.|+++|.||+|+.+..... . ..+. + ...
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~------~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~ 173 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD------SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV 173 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH------cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence 111111257899999999998776655444433322 267999999999987642211 1 1111 1 124
Q ss_pred cEEEEeccCCCCHHHHHHHHHHHhhc
Q 008468 461 DHVFTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 461 ~~i~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
.++++||+++.|++++++.|.+.+..
T Consensus 174 ~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 174 QVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred ceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 57899999999999999999887643
No 175
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.59 E-value=4.9e-15 Score=162.98 Aligned_cols=117 Identities=21% Similarity=0.285 Sum_probs=84.4
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcce---------------ecc------ccCeeEEEEEEEEEECCeeeEEEeCCCC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAI---------------VTE------IAGTTRDVIEASVTVCGVPVTLLDTAGI 376 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~---------------vs~------~~gtT~d~~~~~~~~~g~~i~LiDTpG~ 376 (564)
..+|+|+|++|+|||||+|+|++....+ +.+ ..++|.......+.+++..+.||||||+
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 4799999999999999999999743211 111 2334444444556778999999999999
Q ss_pred CCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCC
Q 008468 377 RETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448 (564)
Q Consensus 377 ~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~ 448 (564)
.++.... ..++..+|++|+|+|++++...+....+..+.. .+.|+++|+||+|+....
T Consensus 93 ~df~~~~--------~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~------~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 93 EDFSEDT--------YRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL------RDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp TTCCHHH--------HHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT------TTCCEEEEEECTTSCCSC
T ss_pred hhHHHHH--------HHHHHHCCEEEEEEeCCccchHHHHHHHHHHHH------cCCCEEEEEcCcCCcccc
Confidence 8775432 345789999999999999877666666655432 368999999999997643
No 176
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.59 E-value=1.1e-15 Score=164.47 Aligned_cols=147 Identities=21% Similarity=0.216 Sum_probs=95.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCccee------------------------cc------ccCeeEEEEEEEEEECCe
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIV------------------------TE------IAGTTRDVIEASVTVCGV 366 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~v------------------------s~------~~gtT~d~~~~~~~~~g~ 366 (564)
..++|+++|++|+|||||+|+|++....+. .+ .+++|.+.....+..++.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 348999999999999999999987521111 11 367888887777888889
Q ss_pred eeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCC-------CChhHHHHHHHHHhccccCCCC-CCEEEE
Q 008468 367 PVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDG-------WTSEDSELLNRIQSNKKSTESS-TPMILV 438 (564)
Q Consensus 367 ~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~-------~s~~~~~~l~~l~~~~~~~~~~-~PvIvV 438 (564)
.+.||||||+.++... ...++..+|++|+|+|++++ +..+..+.+..+... + .|+|+|
T Consensus 85 ~~~iiDtpG~~~f~~~--------~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~------~~~~iivv 150 (435)
T 1jny_A 85 FFTIIDAPGHRDFVKN--------MITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM------GLDQLIVA 150 (435)
T ss_dssp EEEECCCSSSTTHHHH--------HHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT------TCTTCEEE
T ss_pred EEEEEECCCcHHHHHH--------HHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHc------CCCeEEEE
Confidence 9999999999876543 23457899999999999985 333444444333221 3 368999
Q ss_pred EecCCCCCCC--cc--h--h---hhhcc--c----CCcEEEEeccCCCCHHHHH
Q 008468 439 INKIDCAPSA--SN--E--W---NKVGN--S----FNDHVFTCAVTGQGIQDLE 477 (564)
Q Consensus 439 ~NK~DL~~~~--~~--~--~---~~l~~--~----~~~~i~iSAktg~GI~eL~ 477 (564)
+||+|+.+.. .. . . .++.. . ..+++++||++|.|+.+++
T Consensus 151 iNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 151 VNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp EECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred EEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 9999998632 11 1 0 11111 1 2569999999999997543
No 177
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.58 E-value=2.3e-14 Score=162.36 Aligned_cols=160 Identities=21% Similarity=0.221 Sum_probs=104.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceecccc----------------------------------------------
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIA---------------------------------------------- 350 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~---------------------------------------------- 350 (564)
.-++|+|+|.+|+|||||+|+|+|.++.....-+
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 4579999999999999999999998752211111
Q ss_pred ----CeeEEEEEEEEEE-CCeeeEEEeCCCCCCc------hhHHHHhhhhhhhhhh-hcCcEEEEEecCCCCCChhHH-H
Q 008468 351 ----GTTRDVIEASVTV-CGVPVTLLDTAGIRET------DDIVEKIGVERSEAVA-LGADVIIMTVSAVDGWTSEDS-E 417 (564)
Q Consensus 351 ----gtT~d~~~~~~~~-~g~~i~LiDTpG~~~~------~~~ie~~~i~~~~~~l-~~aD~vl~ViD~s~~~s~~~~-~ 417 (564)
+.+.+.+...+.. +...+.|+||||+... .+..+.++ .....++ ..+|++++|+|++.+....+. .
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~-~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIR-DMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHH-HHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHH-HHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 1111222222222 3456899999999762 22222222 1122223 689999999999987776665 4
Q ss_pred HHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcc-------cCCcEEEEeccCCCCHHHHHHHHHHH
Q 008468 418 LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGN-------SFNDHVFTCAVTGQGIQDLETAIMKI 483 (564)
Q Consensus 418 ~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~-------~~~~~i~iSAktg~GI~eL~~~L~~~ 483 (564)
++..+.. .+.|+|+|+||+|+.+........... .+.+++++||++|.|+++|++.+.+.
T Consensus 209 ll~~L~~------~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 209 IAKEVDP------QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHCT------TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHh------cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 5554432 368999999999998654332211111 12356889999999999999999873
No 178
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.58 E-value=2.9e-15 Score=159.86 Aligned_cols=168 Identities=22% Similarity=0.235 Sum_probs=115.1
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC-eeeEEEeCCCCCCchhHHHHhhhhhhhhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG-VPVTLLDTAGIRETDDIVEKIGVERSEAV 394 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g-~~i~LiDTpG~~~~~~~ie~~~i~~~~~~ 394 (564)
+.+-.|+|+|++|||||||+|+|++... .+.+++.+|.......+.+++ ..+.++||||+.+.......++. .....
T Consensus 155 k~g~~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~-~fl~~ 232 (416)
T 1udx_A 155 MLIADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGL-EFLRH 232 (416)
T ss_dssp CCSCSEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCH-HHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhH-HHHHH
Confidence 3446799999999999999999999864 567888888877777777776 78999999998653211111111 11223
Q ss_pred hhcCcEEEEEecCCCCCChhHHHHHHH-HHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcccCCcEEEEeccCCC
Q 008468 395 ALGADVIIMTVSAVDGWTSEDSELLNR-IQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGNSFNDHVFTCAVTGQ 471 (564)
Q Consensus 395 l~~aD~vl~ViD~s~~~s~~~~~~l~~-l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~~~~~~i~iSAktg~ 471 (564)
+..+|.+++|+|++ .....+...+.. +... .......|.++|+||+|+........ +.+.....+++.+||+++.
T Consensus 233 ~era~~lL~vvDls-~~~~~~ls~g~~el~~l-a~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~ 310 (416)
T 1udx_A 233 IARTRVLLYVLDAA-DEPLKTLETLRKEVGAY-DPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGA 310 (416)
T ss_dssp HTSSSEEEEEEETT-SCHHHHHHHHHHHHHHH-CHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCT
T ss_pred HHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHH-hHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCcc
Confidence 56799999999997 333444433322 2211 00012479999999999976511111 2222334579999999999
Q ss_pred CHHHHHHHHHHHhhcc
Q 008468 472 GIQDLETAIMKIVGLH 487 (564)
Q Consensus 472 GI~eL~~~L~~~l~~~ 487 (564)
|+++|++.|.+.+...
T Consensus 311 gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 311 GLPALKEALHALVRST 326 (416)
T ss_dssp THHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999988643
No 179
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.58 E-value=8.6e-15 Score=166.02 Aligned_cols=116 Identities=17% Similarity=0.146 Sum_probs=86.4
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcce-----------ecc------ccCeeEEEEEEEEEECCeeeEEEeCCCCCCch
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAI-----------VTE------IAGTTRDVIEASVTVCGVPVTLLDTAGIRETD 380 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~-----------vs~------~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~ 380 (564)
..+|+|+|++|+|||||+|+|+.....+ +.+ ..++|.......+.+++..++||||||+.++.
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 91 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFT 91 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTCH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccchH
Confidence 4789999999999999999998422111 111 34566666666778889999999999998775
Q ss_pred hHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCC
Q 008468 381 DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447 (564)
Q Consensus 381 ~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~ 447 (564)
... ..++..+|++|+|+|++++.+.++...|..+... +.|+++|+||+|+...
T Consensus 92 ~~~--------~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~------~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 92 IEV--------ERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY------KVPRIAFANKMDKTGA 144 (691)
T ss_dssp HHH--------HHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT------TCCEEEEEECTTSTTC
T ss_pred HHH--------HHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHc------CCCEEEEEECCCcccC
Confidence 543 3457889999999999999888888888765542 6899999999999764
No 180
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.58 E-value=4.1e-16 Score=168.88 Aligned_cols=145 Identities=17% Similarity=0.141 Sum_probs=100.1
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcc------------------------eecc------ccCeeEEEEEEEEEECCee
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERA------------------------IVTE------IAGTTRDVIEASVTVCGVP 367 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~------------------------~vs~------~~gtT~d~~~~~~~~~g~~ 367 (564)
.++|+++|++|+|||||+|+|++.... .+.+ ..|+|.+.....+..++..
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 489999999999999999999864110 1111 2577877766677788899
Q ss_pred eEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCCh-------hHHHHHHHHHhccccCCCCCC-EEEEE
Q 008468 368 VTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTS-------EDSELLNRIQSNKKSTESSTP-MILVI 439 (564)
Q Consensus 368 i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~-------~~~~~l~~l~~~~~~~~~~~P-vIvV~ 439 (564)
+.||||||+.++... ...++..+|++|+|+|++++... +..+.+..+.. .+.| +|+|+
T Consensus 87 ~~iiDtPGh~~f~~~--------~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~------~~v~~iivvi 152 (458)
T 1f60_A 87 VTVIDAPGHRDFIKN--------MITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT------LGVRQLIVAV 152 (458)
T ss_dssp EEEEECCCCTTHHHH--------HHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH------TTCCEEEEEE
T ss_pred EEEEECCCcHHHHHH--------HHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH------cCCCeEEEEE
Confidence 999999998766433 23457899999999999875322 33343433322 2455 89999
Q ss_pred ecCCCCCCCcch--h--hhhc---c--c----CCcEEEEeccCCCCHHHH
Q 008468 440 NKIDCAPSASNE--W--NKVG---N--S----FNDHVFTCAVTGQGIQDL 476 (564)
Q Consensus 440 NK~DL~~~~~~~--~--~~l~---~--~----~~~~i~iSAktg~GI~eL 476 (564)
||+|+.+..... . +++. . . ..+++++||++|.|+.++
T Consensus 153 NK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 153 NKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred EccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 999997422111 1 1111 1 1 257999999999998754
No 181
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.56 E-value=1e-14 Score=165.55 Aligned_cols=116 Identities=19% Similarity=0.193 Sum_probs=87.2
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcce-----------ecc------ccCeeEEEEEEEEEECCeeeEEEeCCCCCCch
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAI-----------VTE------IAGTTRDVIEASVTVCGVPVTLLDTAGIRETD 380 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~-----------vs~------~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~ 380 (564)
..+|+|+|++|+|||||+|+|++....+ +.+ .+++|.......+.+++..++||||||+.++.
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 89 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFT 89 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchH
Confidence 3789999999999999999999532111 112 24556665566778889999999999998876
Q ss_pred hHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCC
Q 008468 381 DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447 (564)
Q Consensus 381 ~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~ 447 (564)
... ..+++.+|++|+|+|++++.+.++...|..+... +.|+++|+||+|+...
T Consensus 90 ~~~--------~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~------~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 90 VEV--------ERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTY------GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp HHH--------HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHT------TCCEEEEEECTTSTTC
T ss_pred HHH--------HHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHc------CCCEEEEEECCCcccc
Confidence 543 3457889999999999999888888888776543 6899999999999764
No 182
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.54 E-value=5.4e-15 Score=172.16 Aligned_cols=155 Identities=17% Similarity=0.136 Sum_probs=105.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCc----c-----------eeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSER----A-----------IVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDD 381 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~----~-----------~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~ 381 (564)
..++|+++|++|+|||||+++|++... . ......|+|.+.....+..++..+.||||||+.++..
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~ 374 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVK 374 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHH
Confidence 448999999999999999999987410 0 0012345565554445556778999999999876532
Q ss_pred HHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCC-EEEEEecCCCCCCCcc-h-----hhh
Q 008468 382 IVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTP-MILVINKIDCAPSASN-E-----WNK 454 (564)
Q Consensus 382 ~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~P-vIvV~NK~DL~~~~~~-~-----~~~ 454 (564)
. ....+..+|++|+|+|++++...+..+.+..+... ++| +|+|+||+|+.+.... + ..+
T Consensus 375 ~--------mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l------gIP~IIVVINKiDLv~d~e~le~i~eEi~e 440 (1289)
T 3avx_A 375 N--------MITGAAQMDGAILVVAATDGPMPQTREHILLGRQV------GVPYIIVFLNKCDMVDDEELLELVEMEVRE 440 (1289)
T ss_dssp H--------HHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH------TCSCEEEEEECCTTCCCHHHHHHHHHHHHH
T ss_pred H--------HHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc------CCCeEEEEEeecccccchhhHHHHHHHHHH
Confidence 2 23457899999999999998877777766554432 578 7899999999863221 1 011
Q ss_pred hcc------cCCcEEEEeccCC--------CCHHHHHHHHHHHhh
Q 008468 455 VGN------SFNDHVFTCAVTG--------QGIQDLETAIMKIVG 485 (564)
Q Consensus 455 l~~------~~~~~i~iSAktg--------~GI~eL~~~L~~~l~ 485 (564)
+.. ...+++++||++| .|+++|++.|.+.+.
T Consensus 441 lLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 441 LLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 211 1257999999999 578999999887654
No 183
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.54 E-value=2.3e-15 Score=163.46 Aligned_cols=147 Identities=21% Similarity=0.172 Sum_probs=88.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcc------------------------eecc------ccCeeEEEEEEEEEECCe
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERA------------------------IVTE------IAGTTRDVIEASVTVCGV 366 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~------------------------~vs~------~~gtT~d~~~~~~~~~g~ 366 (564)
..++|+++|++|+|||||+++|+..... .+.+ ..++|.+.....+.+++.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~ 121 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 121 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence 3489999999999999999999753211 1111 246777776667778899
Q ss_pred eeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCC-------hhHHHHHHHHHhccccCCCCCC-EEEE
Q 008468 367 PVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWT-------SEDSELLNRIQSNKKSTESSTP-MILV 438 (564)
Q Consensus 367 ~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s-------~~~~~~l~~l~~~~~~~~~~~P-vIvV 438 (564)
.+.||||||+.++.... ...+..+|++|+|+|++++.. .+..+.+..... .+.| +|+|
T Consensus 122 ~~~iiDtPGh~~f~~~~--------~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~------~~vp~iivv 187 (467)
T 1r5b_A 122 RFSLLDAPGHKGYVTNM--------INGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART------QGINHLVVV 187 (467)
T ss_dssp EEEECCCCC-------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH------TTCSSEEEE
T ss_pred EEEEEECCCcHHHHHHH--------HhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH------cCCCEEEEE
Confidence 99999999998764332 234788999999999998631 233343433322 2566 9999
Q ss_pred EecCCCCCCCc--c--h-----hhh-hccc-------CCcEEEEeccCCCCHHHHH
Q 008468 439 INKIDCAPSAS--N--E-----WNK-VGNS-------FNDHVFTCAVTGQGIQDLE 477 (564)
Q Consensus 439 ~NK~DL~~~~~--~--~-----~~~-l~~~-------~~~~i~iSAktg~GI~eL~ 477 (564)
+||+|+..... . . ... +... ..+++++||++|.|+.+++
T Consensus 188 iNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 188 INKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp EECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred EECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 99999965321 1 0 011 1111 2358999999999998765
No 184
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.54 E-value=7.4e-14 Score=158.62 Aligned_cols=117 Identities=19% Similarity=0.176 Sum_probs=88.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcc-----------eecc------ccCeeEEEEEEEEEECC-------eeeEEEe
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERA-----------IVTE------IAGTTRDVIEASVTVCG-------VPVTLLD 372 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~-----------~vs~------~~gtT~d~~~~~~~~~g-------~~i~LiD 372 (564)
+..+|+|+|+.|+|||||+++|+..... .+.+ ..++|.......+.+++ ..++|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 3478999999999999999999753211 1111 24556666556677776 8899999
Q ss_pred CCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCC
Q 008468 373 TAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447 (564)
Q Consensus 373 TpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~ 447 (564)
|||+.++...+ ..+++.+|++|+|+|++++...+....|..... .+.|+++|+||+|+...
T Consensus 89 TPG~~df~~~~--------~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~------~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 89 TPGHVDFTIEV--------ERSMRVLDGAVMVYCAVGGVQPQSETVWRQANK------YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred CCCccchHHHH--------HHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHH------cCCCEEEEEeCCCcccc
Confidence 99998775443 245788999999999999888777777766543 26899999999998754
No 185
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.53 E-value=3.1e-14 Score=160.82 Aligned_cols=116 Identities=24% Similarity=0.233 Sum_probs=87.9
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcce-----------ecc------ccCeeEEEEEEEEEECCeeeEEEeCCCCCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAI-----------VTE------IAGTTRDVIEASVTVCGVPVTLLDTAGIRE 378 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~-----------vs~------~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~ 378 (564)
..+.+|+|+|++|+|||||+++|++....+ +.+ ..+.|.......+.+++..++||||||+.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 345789999999999999999999543210 111 124455555556677889999999999987
Q ss_pred chhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCC
Q 008468 379 TDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445 (564)
Q Consensus 379 ~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~ 445 (564)
+... ...++..+|++++|+|++++...+..+.|..+... +.|+++|+||+|+.
T Consensus 87 f~~~--------~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~------~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGE--------IRGALEAADAALVAVSAEAGVQVGTERAWTVAERL------GLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHH--------HHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT------TCCEEEEEECGGGC
T ss_pred hHHH--------HHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHc------cCCEEEEecCCchh
Confidence 6543 23457889999999999998888777777766542 68999999999987
No 186
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.53 E-value=3.3e-14 Score=148.79 Aligned_cols=90 Identities=28% Similarity=0.324 Sum_probs=67.5
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC-----------------eeeEEEeCCCCCCch
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG-----------------VPVTLLDTAGIRETD 380 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g-----------------~~i~LiDTpG~~~~~ 380 (564)
+++|+|+|.||||||||+|+|++.. ..++++|++|.+.....+.+++ ..+.+|||||+..+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 5799999999999999999999987 5678999999887766677665 468999999998765
Q ss_pred hHHHHhhhhhhhhhhhcCcEEEEEecCCC
Q 008468 381 DIVEKIGVERSEAVALGADVIIMTVSAVD 409 (564)
Q Consensus 381 ~~ie~~~i~~~~~~l~~aD~vl~ViD~s~ 409 (564)
...+.++ .....+++.+|++++|+|+++
T Consensus 81 ~~~~gl~-~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLG-NKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGT-CCHHHHHHTCSEEEEEEECSC
T ss_pred cccchHH-HHHHHHHHhcCeEEEEEecCC
Confidence 4333332 223456899999999999986
No 187
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.53 E-value=3.5e-15 Score=155.35 Aligned_cols=178 Identities=17% Similarity=0.194 Sum_probs=109.4
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhc------CCcceeccccCeeE----------------------------------
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSK------SERAIVTEIAGTTR---------------------------------- 354 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~------~~~~~vs~~~gtT~---------------------------------- 354 (564)
...+..|+|+|++|||||||+|.|.+ .+..+++..+.+++
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G 131 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG 131 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence 35677899999999999999999984 33333332222211
Q ss_pred ---EEEEE--EEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHH-HHHhcccc
Q 008468 355 ---DVIEA--SVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLN-RIQSNKKS 428 (564)
Q Consensus 355 ---d~~~~--~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~-~l~~~~~~ 428 (564)
+..+. .+..++.++.|+||||+.+....+ ...+|++++|+|+..+.. .+.+. .+.
T Consensus 132 ~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v-----------~~~~d~vl~v~d~~~~~~---~~~i~~~i~----- 192 (337)
T 2qm8_A 132 VAAKTRETMLLCEAAGFDVILVETVGVGQSETAV-----------ADLTDFFLVLMLPGAGDE---LQGIKKGIF----- 192 (337)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHH-----------HTTSSEEEEEECSCC---------CCTTHH-----
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhH-----------HhhCCEEEEEEcCCCccc---HHHHHHHHh-----
Confidence 10000 022368899999999998754322 467999999999864321 11010 011
Q ss_pred CCCCCCEEEEEecCCCCCCCcch---hhhhc------c-----cCCcEEEEeccCCCCHHHHHHHHHHHhhccCCCCCCc
Q 008468 429 TESSTPMILVINKIDCAPSASNE---WNKVG------N-----SFNDHVFTCAVTGQGIQDLETAIMKIVGLHQIPAGGR 494 (564)
Q Consensus 429 ~~~~~PvIvV~NK~DL~~~~~~~---~~~l~------~-----~~~~~i~iSAktg~GI~eL~~~L~~~l~~~~~~~~~~ 494 (564)
+.+.++|+||+|+....... .+.+. . ..++++.+||++|.|+++|++.|.+...... . .
T Consensus 193 ---~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~~~~---~-~ 265 (337)
T 2qm8_A 193 ---ELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLT---A-T 265 (337)
T ss_dssp ---HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHH---H-T
T ss_pred ---ccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH---h-C
Confidence 23568888999976432211 01111 1 1467899999999999999999998764211 1 1
Q ss_pred cccccHHHHHHHHHHHHHHHHHHH
Q 008468 495 RWAVNQRQCEQLMRTKEALVRLKS 518 (564)
Q Consensus 495 ~~~~~~r~~~~l~~~~~~L~~~~~ 518 (564)
.+..+.|+.+....+.+.+.+...
T Consensus 266 ~~~~~~r~~~~~~~~~~~i~~~~~ 289 (337)
T 2qm8_A 266 GEIAGKRREQDVKWMWALVHERLH 289 (337)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233456776677777777665443
No 188
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.50 E-value=5.8e-14 Score=155.08 Aligned_cols=115 Identities=22% Similarity=0.313 Sum_probs=89.6
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcce---------------ecc------ccCeeEEEEEEEEEECCeeeEEEeCCCCCC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAI---------------VTE------IAGTTRDVIEASVTVCGVPVTLLDTAGIRE 378 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~---------------vs~------~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~ 378 (564)
+|+|+|+.++|||||..+|+.....+ +.+ ..|.|.......+.|+++.++|+||||+.+
T Consensus 33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvD 112 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQD 112 (548)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGGG
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHH
Confidence 69999999999999999997432211 112 234444445566788999999999999999
Q ss_pred chhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCC
Q 008468 379 TDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448 (564)
Q Consensus 379 ~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~ 448 (564)
|...++ ..++-+|.+|+|+|+..+...+....|+..... ++|.|+++||+|....+
T Consensus 113 F~~Ev~--------raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~------~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 113 FSEDTY--------RVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR------ATPVMTFVNKMDREALH 168 (548)
T ss_dssp CSHHHH--------HHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT------TCCEEEEEECTTSCCCC
T ss_pred HHHHHH--------HHHHhcCceEEEeecCCCcccccHHHHHHHHHh------CCceEEEEecccchhcc
Confidence 976644 348899999999999999999999999887664 78999999999987654
No 189
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.50 E-value=1.8e-14 Score=151.01 Aligned_cols=158 Identities=20% Similarity=0.158 Sum_probs=97.1
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeE-------------------------------------------
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTR------------------------------------------- 354 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~------------------------------------------- 354 (564)
-.+|+|+|++|||||||+|+|++.++..... ..+|+
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~-~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGS-GIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCS-SSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCC-CcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 3599999999999999999999977521111 11110
Q ss_pred -----------EEEEEEE-EECCeeeEEEeCCCCCCc-----hhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHH
Q 008468 355 -----------DVIEASV-TVCGVPVTLLDTAGIRET-----DDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSE 417 (564)
Q Consensus 355 -----------d~~~~~~-~~~g~~i~LiDTpG~~~~-----~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~ 417 (564)
+.+...+ ..+...+.||||||+... ...........+..++.++|++|+|+|..+...... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~-~ 191 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS-D 191 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC-H
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH-H
Confidence 0111111 113456899999999864 112222334556778999999999998765332211 1
Q ss_pred HHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhc----ccCCcEEEEeccCCCCHHHHHHHH
Q 008468 418 LLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVG----NSFNDHVFTCAVTGQGIQDLETAI 480 (564)
Q Consensus 418 ~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~----~~~~~~i~iSAktg~GI~eL~~~L 480 (564)
.+. +.... ...+.|+|+|+||+|+.+......+.+. ....+++++|++++.|+++.+...
T Consensus 192 ~~~-l~~~~--~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 192 AIK-ISREV--DPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp HHH-HHHHS--CTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred HHH-HHHHh--cccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence 122 22211 1246799999999999865433222111 123578999999999988765543
No 190
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.49 E-value=2.4e-14 Score=150.43 Aligned_cols=159 Identities=16% Similarity=0.180 Sum_probs=75.5
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceeccc--------cCeeEEEEEEEEEECCe--eeEEEeCCCCCCchhHHHHhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEI--------AGTTRDVIEASVTVCGV--PVTLLDTAGIRETDDIVEKIG 387 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~--------~gtT~d~~~~~~~~~g~--~i~LiDTpG~~~~~~~ie~~~ 387 (564)
.++|+|+|++|+|||||+|+|++......... ++++.+.....+..++. .+.+|||||+.+..+..+.+.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 37999999999999999999987653322211 23333333334444554 678999999954321111110
Q ss_pred -h-----hhhhhhhh-------------cCcEEEEEecC-CCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCC
Q 008468 388 -V-----ERSEAVAL-------------GADVIIMTVSA-VDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447 (564)
Q Consensus 388 -i-----~~~~~~l~-------------~aD~vl~ViD~-s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~ 447 (564)
+ .....++. .+|+++|+++. ..+....+..++..+ ..++|+|+|+||+|+...
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-------~~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-------HNKVNIVPVIAKADTLTL 189 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-------CS-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-------ccCCCEEEEEECCCCCCH
Confidence 0 00012222 23567777775 344444444333332 246899999999999865
Q ss_pred Ccchh-----hh-hcccCCcEEEEeccCCCCHHHHHHHHHHHh
Q 008468 448 ASNEW-----NK-VGNSFNDHVFTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 448 ~~~~~-----~~-l~~~~~~~i~iSAktg~GI~eL~~~L~~~l 484 (564)
..... .+ +.....+++++||++|.| ++.+..+.+.+
T Consensus 190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i 231 (361)
T 2qag_A 190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLL 231 (361)
T ss_dssp HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHH
Confidence 43321 11 222346789999999988 66665555544
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.41 E-value=1.2e-13 Score=133.71 Aligned_cols=148 Identities=16% Similarity=0.152 Sum_probs=90.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC-----cceeccccCeeEEE--------EEEEE------------------EECC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE-----RAIVTEIAGTTRDV--------IEASV------------------TVCG 365 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~-----~~~vs~~~gtT~d~--------~~~~~------------------~~~g 365 (564)
...+|+|+|.+|||||||+|+|++.. .+.+...++++.|. ....+ ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 34789999999999999999998752 22233223322110 00001 1134
Q ss_pred eeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCC
Q 008468 366 VPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445 (564)
Q Consensus 366 ~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~ 445 (564)
..+.+|||+|...... .+...++.+++|+|++.+... .+..... .+.|+++|+||+|+.
T Consensus 109 ~d~iiidt~G~~~~~~-----------~~~~~~~~~i~vvd~~~~~~~----~~~~~~~------~~~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV-----------DFDLGENYRVVMVSVTEGDDV----VEKHPEI------FRVADLIVINKVALA 167 (221)
T ss_dssp CSEEEEEEEEBSSGGG-----------GCCCSCSEEEEEEEGGGCTTH----HHHCHHH------HHTCSEEEEECGGGH
T ss_pred CCEEEEeCCCCCCCCc-----------hhccccCcEEEEEeCCCcchh----hhhhhhh------hhcCCEEEEecccCC
Confidence 5678888888521111 011246889999999875321 1111111 146899999999986
Q ss_pred CCC--cchh--hhhcc--cCCcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 446 PSA--SNEW--NKVGN--SFNDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 446 ~~~--~~~~--~~l~~--~~~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
+.. .... +.+.. ...+++++||++|.|+++++++|.+.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 168 EAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp HHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred cchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 431 1111 22221 2357899999999999999999998774
No 192
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.41 E-value=1.8e-13 Score=143.83 Aligned_cols=89 Identities=28% Similarity=0.334 Sum_probs=65.4
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEEC---------------------CeeeEEEeCCCCC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVC---------------------GVPVTLLDTAGIR 377 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~---------------------g~~i~LiDTpG~~ 377 (564)
++|+|+|.||||||||+|+|++.. ..+.++|++|.+.......+. +..+.+|||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 579999999999999999999875 456788888776555444432 3568999999997
Q ss_pred CchhHHHHhhhhhhhhhhhcCcEEEEEecCCC
Q 008468 378 ETDDIVEKIGVERSEAVALGADVIIMTVSAVD 409 (564)
Q Consensus 378 ~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~ 409 (564)
......+.++ ......++.+|++++|+|+++
T Consensus 81 ~~a~~~~~lg-~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHKGEGLG-NQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCSSSCTT-HHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccchHH-HHHHHHHHhCCEEEEEEECCC
Confidence 6532211121 223456899999999999986
No 193
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.39 E-value=1.1e-13 Score=155.52 Aligned_cols=115 Identities=25% Similarity=0.256 Sum_probs=91.6
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcce-----------eccc------cCeeEEEEEEEEEECCeeeEEEeCCCCCCchhH
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAI-----------VTEI------AGTTRDVIEASVTVCGVPVTLLDTAGIRETDDI 382 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~-----------vs~~------~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ 382 (564)
+|+|+|+.++|||||..+|+.....+ +.++ .|.|.......+.++++.++|+||||+.+|...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E 83 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE 83 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence 68999999999999999997422111 1221 255665556667889999999999999999766
Q ss_pred HHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCC
Q 008468 383 VEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSA 448 (564)
Q Consensus 383 ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~ 448 (564)
++ ..++-+|++|+|+|+..+...+....|+..... ++|.|+++||+|....+
T Consensus 84 v~--------raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~------~lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 84 VY--------RSLSVLDGAILLISAKDGVQAQTRILFHALRKM------GIPTIFFINKIDQNGID 135 (638)
T ss_dssp HH--------HHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH------TCSCEECCEECCSSSCC
T ss_pred HH--------HHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc------CCCeEEEEeccccccCC
Confidence 44 347889999999999999999999999887765 68999999999986543
No 194
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.38 E-value=1.9e-12 Score=143.00 Aligned_cols=127 Identities=20% Similarity=0.184 Sum_probs=83.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcc--eeccccCeeEEEEEEE----------------------------------
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERA--IVTEIAGTTRDVIEAS---------------------------------- 360 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~--~vs~~~gtT~d~~~~~---------------------------------- 360 (564)
..++|+|+|.+|||||||+|+|++.... .++..|.|++......
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4479999999999999999999999865 4677777755321110
Q ss_pred --EEECC---eeeEEEeCCCCCCchh-HHHH-h-hhhhhhhhhhcCcEEEEEecCCCC-CChhHHHHHHHHHhccccCCC
Q 008468 361 --VTVCG---VPVTLLDTAGIRETDD-IVEK-I-GVERSEAVALGADVIIMTVSAVDG-WTSEDSELLNRIQSNKKSTES 431 (564)
Q Consensus 361 --~~~~g---~~i~LiDTpG~~~~~~-~ie~-~-~i~~~~~~l~~aD~vl~ViD~s~~-~s~~~~~~l~~l~~~~~~~~~ 431 (564)
+.+.+ ..+.||||||+.+... .+.. + ....+..++..+|++|+|+|+++. ....+...+..+.. .
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~------~ 217 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG------H 217 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT------C
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh------c
Confidence 00111 3689999999975221 1111 0 012234568899999999999884 44444444444322 3
Q ss_pred CCCEEEEEecCCCCCCCc
Q 008468 432 STPMILVINKIDCAPSAS 449 (564)
Q Consensus 432 ~~PvIvV~NK~DL~~~~~ 449 (564)
+.|+++|+||+|+.....
T Consensus 218 ~~pvilVlNK~Dl~~~~e 235 (550)
T 2qpt_A 218 EDKIRVVLNKADMVETQQ 235 (550)
T ss_dssp GGGEEEEEECGGGSCHHH
T ss_pred CCCEEEEEECCCccCHHH
Confidence 578999999999986543
No 195
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.35 E-value=7e-13 Score=135.80 Aligned_cols=160 Identities=16% Similarity=0.202 Sum_probs=78.8
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceecccc-------Ce-eEEEEEEEEEECC--eeeEEEeCCCCC-------Cch
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIA-------GT-TRDVIEASVTVCG--VPVTLLDTAGIR-------ETD 380 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~-------gt-T~d~~~~~~~~~g--~~i~LiDTpG~~-------~~~ 380 (564)
.++|+|+|++|||||||+|+|++......+..+ .+ ........+..++ ..+.+|||+|+. ...
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 389999999999999999999886322222111 11 1111222222233 467899999983 222
Q ss_pred hHHHHhh------------hhhhhhhhhcCcEEEEEecCCC-CCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCC
Q 008468 381 DIVEKIG------------VERSEAVALGADVIIMTVSAVD-GWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447 (564)
Q Consensus 381 ~~ie~~~------------i~~~~~~l~~aD~vl~ViD~s~-~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~ 447 (564)
...+.+. ..+.+.....+++++++.+++. +....+.+.+..+. .+.|+++|+||+|+...
T Consensus 98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-------~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-------NKVNIVPVIAKADTLTL 170 (301)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-------TTSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-------hcCCEEEEEEeCCCCCH
Confidence 2222100 0001111223556777777654 35555544443331 25789999999999764
Q ss_pred Ccchh-----hh-hcccCCcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 448 ASNEW-----NK-VGNSFNDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 448 ~~~~~-----~~-l~~~~~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
..... .+ +.....+++++||++| |+++++..+.+.+.
T Consensus 171 ~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 171 KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence 33211 12 2233467899999999 99999999888774
No 196
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.31 E-value=1.1e-12 Score=140.02 Aligned_cols=160 Identities=16% Similarity=0.205 Sum_probs=77.0
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceec------cccCee-EEEEEEEEEECC--eeeEEEeCCCCCCchh-------H
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVT------EIAGTT-RDVIEASVTVCG--VPVTLLDTAGIRETDD-------I 382 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs------~~~gtT-~d~~~~~~~~~g--~~i~LiDTpG~~~~~~-------~ 382 (564)
++|+|+|++|||||||+|+|++..+.... ....++ .+.+...+...+ ..+.+|||+|+..... .
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i 111 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV 111 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHH
Confidence 68999999999999999999997653211 011122 222222222233 3578999999975311 1
Q ss_pred HH-------Hhhhh---hhhhhhhc--CcEEEEEecCC-CCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCc
Q 008468 383 VE-------KIGVE---RSEAVALG--ADVIIMTVSAV-DGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS 449 (564)
Q Consensus 383 ie-------~~~i~---~~~~~l~~--aD~vl~ViD~s-~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~ 449 (564)
.+ .+... .++.++.+ +|+++++.+++ .+....+..++..+. .+.|+|+|+||+|+.....
T Consensus 112 ~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-------~~v~iIlVinK~Dll~~~e 184 (418)
T 2qag_C 112 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-------EKVNIIPLIAKADTLTPEE 184 (418)
T ss_dssp HHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-------TTSEEEEEEESTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-------ccCcEEEEEEcccCccHHH
Confidence 10 00000 01223434 45677777776 566666655555542 2689999999999976543
Q ss_pred chh------hhhcccCCcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 450 NEW------NKVGNSFNDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 450 ~~~------~~l~~~~~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
... +.+.....+++++|++++.++++++..+.+.+.
T Consensus 185 v~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 185 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred HHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 321 122234467899999999999998888877653
No 197
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.30 E-value=1.1e-11 Score=141.22 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=85.1
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCcce-----------ecc------ccCeeEEEEEEEEEEC-------CeeeEEEeCCC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSERAI-----------VTE------IAGTTRDVIEASVTVC-------GVPVTLLDTAG 375 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~~~-----------vs~------~~gtT~d~~~~~~~~~-------g~~i~LiDTpG 375 (564)
+|+|+|+.++|||||..+|+.....+ +.+ ..|.|.......+.|. ++.++|+||||
T Consensus 15 Ni~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPG 94 (709)
T 4fn5_A 15 NIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPG 94 (709)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCCS
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCC
Confidence 69999999999999999997432110 111 2344444444455553 57899999999
Q ss_pred CCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCC
Q 008468 376 IRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447 (564)
Q Consensus 376 ~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~ 447 (564)
+.+|...++ ..++-+|.+|+|+|+..+...+....|+..... +.|.|+|+||+|....
T Consensus 95 HvDF~~Ev~--------~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~------~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 95 HVDFTIEVE--------RSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY------GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CTTCHHHHH--------HHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH------TCCEEEEEECSSSTTC
T ss_pred CcccHHHHH--------HHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc------CCCeEEEEccccccCc
Confidence 999987654 347889999999999999999999999987765 7899999999998644
No 198
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.29 E-value=2.5e-12 Score=148.82 Aligned_cols=113 Identities=20% Similarity=0.279 Sum_probs=83.9
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccc---------------cCeeEEEEEEEEEEC----------------Cee
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEI---------------AGTTRDVIEASVTVC----------------GVP 367 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~---------------~gtT~d~~~~~~~~~----------------g~~ 367 (564)
.+|+|+|++|+|||||+|+|++....+.+.. .+.|.......+.++ +..
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL 99 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCce
Confidence 6899999999999999999997643322211 223332222233333 578
Q ss_pred eEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCC
Q 008468 368 VTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCA 445 (564)
Q Consensus 368 i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~ 445 (564)
++||||||+.++...+ ..+++.+|++|+|+|++++.+.++...|...... +.|+++|+||+|+.
T Consensus 100 i~liDTPG~~df~~~~--------~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~------~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 100 INLIDSPGHVDFSSEV--------TAALRVTDGALVVVDTIEGVCVQTETVLRQALGE------RIKPVVVINKVDRA 163 (842)
T ss_dssp EEEECCCCCCSSCHHH--------HHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT------TCEEEEEEECHHHH
T ss_pred EEEEECcCchhhHHHH--------HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc------CCCeEEEEECCCcc
Confidence 8999999999886553 3457899999999999999998888777765532 68999999999986
No 199
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.28 E-value=1.5e-12 Score=129.26 Aligned_cols=165 Identities=18% Similarity=0.162 Sum_probs=97.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHhh-----cCCcceeccccCee----------------EEEEEEEE--------------
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWS-----KSERAIVTEIAGTT----------------RDVIEASV-------------- 361 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~-----~~~~~~vs~~~gtT----------------~d~~~~~~-------------- 361 (564)
....++++|.+|||||||++.|. +.+...+..-++.+ ++......
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLM 92 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHh
Confidence 34678999999999999999998 66655554333211 10000000
Q ss_pred -----------EE-CCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHH-HHHHHHhcccc
Q 008468 362 -----------TV-CGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSE-LLNRIQSNKKS 428 (564)
Q Consensus 362 -----------~~-~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~-~l~~l~~~~~~ 428 (564)
.+ ++..+.||||||..+.... ...+... ...+.. +++++|+|+.......+.. .+.......
T Consensus 93 ~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~-~~l~~~~-~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~-- 167 (262)
T 1yrb_A 93 EKFNEYLNKILRLEKENDYVLIDTPGQMETFLF-HEFGVRL-MENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID-- 167 (262)
T ss_dssp TTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHH-SHHHHHH-HHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH--
T ss_pred hhHHHHHHHHHHHhhcCCEEEEeCCCccchhhh-hhhHHHH-HHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh--
Confidence 00 1247899999998643221 1111111 123456 8999999987655544432 111111100
Q ss_pred CCCCCCEEEEEecCCCCCCCcchh--h----------hh------------------cc--cCCcEEEEeccCCCCHHHH
Q 008468 429 TESSTPMILVINKIDCAPSASNEW--N----------KV------------------GN--SFNDHVFTCAVTGQGIQDL 476 (564)
Q Consensus 429 ~~~~~PvIvV~NK~DL~~~~~~~~--~----------~l------------------~~--~~~~~i~iSAktg~GI~eL 476 (564)
...+.|+++|+||+|+........ + .+ .. ...+++++||++|.|+++|
T Consensus 168 ~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l 247 (262)
T 1yrb_A 168 LRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDL 247 (262)
T ss_dssp HHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHH
T ss_pred cccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHH
Confidence 012579999999999976432110 0 11 11 1237899999999999999
Q ss_pred HHHHHHHhhc
Q 008468 477 ETAIMKIVGL 486 (564)
Q Consensus 477 ~~~L~~~l~~ 486 (564)
+++|.+.+..
T Consensus 248 ~~~i~~~~~~ 257 (262)
T 1yrb_A 248 ETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 9999988754
No 200
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.22 E-value=1.3e-11 Score=119.52 Aligned_cols=54 Identities=26% Similarity=0.224 Sum_probs=38.8
Q ss_pred CCCEEEEEecCCCCCCC--cchh-hh-hcc--cCCcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 432 STPMILVINKIDCAPSA--SNEW-NK-VGN--SFNDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 432 ~~PvIvV~NK~DL~~~~--~~~~-~~-l~~--~~~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
+.|.++|+||+|+.+.. .... .. +.. ...+++++||++|.|++++++.|.+.+.
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 35789999999986532 1111 11 221 2357999999999999999999988764
No 201
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.20 E-value=6.4e-13 Score=139.92 Aligned_cols=123 Identities=19% Similarity=0.196 Sum_probs=82.6
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC-----CcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS-----ERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSE 392 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~-----~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~ 392 (564)
+.+|+++|.+|+|||||+|+|++. ....++.+|+||++..... ++ ..+.++||||+.......+....+ ..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~-~~~~liDtPG~~~~~~~~~~l~~~-~l 237 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP--LE-SGATLYDTPGIINHHQMAHFVDAR-DL 237 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE--CS-TTCEEEECCSCCCCSSGGGGSCTT-TH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE--eC-CCeEEEeCCCcCcHHHHHHHHhHH-HH
Confidence 357999999999999999999987 4567899999999876643 22 348999999998654322222211 22
Q ss_pred hhh---hcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcc
Q 008468 393 AVA---LGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450 (564)
Q Consensus 393 ~~l---~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~ 450 (564)
..+ ...|.+++++|............+..+ ...+.|+++++||+|.......
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l------~~~~~~~~~v~~k~d~~~~~~~ 292 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLARLDYI------KGGRRSFVCYMANELTVHRTKL 292 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEEEEEE------ESSSEEEEEEECTTSCEEEEEG
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEEEEEc------cCCCceEEEEecCCcccccccH
Confidence 223 778999999998542111111111111 1246799999999998755443
No 202
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.19 E-value=1.4e-11 Score=128.77 Aligned_cols=121 Identities=23% Similarity=0.225 Sum_probs=82.9
Q ss_pred EEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCC----------hhHH-HHHHHHH
Q 008468 355 DVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWT----------SEDS-ELLNRIQ 423 (564)
Q Consensus 355 d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s----------~~~~-~~l~~l~ 423 (564)
......+.+++..+.+|||+|++.+...+ ..++++++++|+|+|+++..+ ..+. ..+..+.
T Consensus 182 Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w--------~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~ 253 (353)
T 1cip_A 182 GIVETHFTFKDLHFKMFDVGGQRSERKKW--------IHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSIC 253 (353)
T ss_dssp SEEEEEEEETTEEEEEEEECCSGGGGGGG--------GGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHH
T ss_pred ceEEEEEeeCCeeEEEEeCCCchhhhHHH--------HHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHH
Confidence 34556677889999999999998766543 356899999999999998432 2222 3333333
Q ss_pred hccccCCCCCCEEEEEecCCCCCCC-----------------cchh-hhhc------------ccCCcEEEEeccCCCCH
Q 008468 424 SNKKSTESSTPMILVINKIDCAPSA-----------------SNEW-NKVG------------NSFNDHVFTCAVTGQGI 473 (564)
Q Consensus 424 ~~~~~~~~~~PvIvV~NK~DL~~~~-----------------~~~~-~~l~------------~~~~~~i~iSAktg~GI 473 (564)
... ...+.|+|+|+||+|+.... ..+. ..+. .....++++||++|.||
T Consensus 254 ~~~--~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV 331 (353)
T 1cip_A 254 NNK--WFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV 331 (353)
T ss_dssp TCG--GGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHH
T ss_pred cCc--cccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhH
Confidence 321 12468999999999985211 1111 1111 12245789999999999
Q ss_pred HHHHHHHHHHhh
Q 008468 474 QDLETAIMKIVG 485 (564)
Q Consensus 474 ~eL~~~L~~~l~ 485 (564)
+++|+++.+.+.
T Consensus 332 ~~vF~~v~~~i~ 343 (353)
T 1cip_A 332 QFVFDAVTDVII 343 (353)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988774
No 203
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.13 E-value=3.7e-11 Score=124.10 Aligned_cols=124 Identities=19% Similarity=0.180 Sum_probs=82.2
Q ss_pred EEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCC-------CC---CChhHH-HHHHHH
Q 008468 354 RDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAV-------DG---WTSEDS-ELLNRI 422 (564)
Q Consensus 354 ~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s-------~~---~s~~~~-~~l~~l 422 (564)
.......+.+++..+.+|||+|++.+... +..++++++++|+|+|++ +. .+..+. ..+..+
T Consensus 155 iGi~~~~~~~~~v~l~iwDtgGQe~~R~~--------w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i 226 (327)
T 3ohm_A 155 TGIIEYPFDLQSVIFRMVDVGGQRSERRK--------WIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTI 226 (327)
T ss_dssp CSEEEEEEEETTEEEEEEEECCSHHHHTT--------GGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHH
T ss_pred eeEEEEEEEeeceeeEEEEcCCchhHHHH--------HHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHH
Confidence 34566677889999999999999765443 345689999999999776 22 222222 334444
Q ss_pred HhccccCCCCCCEEEEEecCCCCCCC------------------cchh-hhh-----c------ccCCcEEEEeccCCCC
Q 008468 423 QSNKKSTESSTPMILVINKIDCAPSA------------------SNEW-NKV-----G------NSFNDHVFTCAVTGQG 472 (564)
Q Consensus 423 ~~~~~~~~~~~PvIvV~NK~DL~~~~------------------~~~~-~~l-----~------~~~~~~i~iSAktg~G 472 (564)
.... ...+.|+++++||+|+.... ..+. .++ . .....++++||+++.|
T Consensus 227 ~~~~--~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~n 304 (327)
T 3ohm_A 227 ITYP--WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTEN 304 (327)
T ss_dssp HTSG--GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHH
T ss_pred hhhh--ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHH
Confidence 3321 12468999999999985421 1111 112 1 1123467899999999
Q ss_pred HHHHHHHHHHHhhcc
Q 008468 473 IQDLETAIMKIVGLH 487 (564)
Q Consensus 473 I~eL~~~L~~~l~~~ 487 (564)
|+.+|+.+.+.+...
T Consensus 305 V~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 305 IRFVFAAVKDTILQL 319 (327)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887543
No 204
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.12 E-value=3e-11 Score=127.66 Aligned_cols=95 Identities=26% Similarity=0.303 Sum_probs=56.9
Q ss_pred hhcCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCe-----------------eeEEEeCCCC
Q 008468 314 LLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGV-----------------PVTLLDTAGI 376 (564)
Q Consensus 314 ~~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~-----------------~i~LiDTpG~ 376 (564)
....+++|+|+|.||||||||+|+|++... .++++|++|.+.....+.+.+. .+.+|||||+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl 96 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGL 96 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCc
Confidence 346679999999999999999999999875 6789999999888887777652 3899999999
Q ss_pred CCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCC
Q 008468 377 RETDDIVEKIGVERSEAVALGADVIIMTVSAVDG 410 (564)
Q Consensus 377 ~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~ 410 (564)
.......+.++ .....+++.+|++++|+|+++.
T Consensus 97 ~~~as~~~glg-~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 97 VKGAHNGQGLG-NAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp ----------C-CHHHHHHHTSSSEEEEEEC---
T ss_pred ccccchhhHHH-HHHHHHHHhcCeEEEEEecCCC
Confidence 86543322222 1345678999999999999753
No 205
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.07 E-value=1.2e-10 Score=120.82 Aligned_cols=84 Identities=20% Similarity=0.262 Sum_probs=58.9
Q ss_pred eEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCC----------CCCChhHH-HHHHH
Q 008468 353 TRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAV----------DGWTSEDS-ELLNR 421 (564)
Q Consensus 353 T~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s----------~~~s~~~~-~~l~~ 421 (564)
|.......+.+++..+.+|||+|++.+...+ ..++++++++|+|+|++ +..+..+. ..+..
T Consensus 148 TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w--------~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~ 219 (340)
T 4fid_A 148 TTGIHEYDFVVKDIPFHLIDVGGQRSERKXW--------VSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKD 219 (340)
T ss_dssp CCSCEEEEEESSSCEEEEEECCSCHHHHHHH--------HTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHH
T ss_pred eeeeEEEEEEeeeeeeccccCCCcccccccH--------HHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHH
Confidence 3445666777889999999999997665553 45689999999999998 32233322 34444
Q ss_pred HHhccccCCCCCCEEEEEecCCCCC
Q 008468 422 IQSNKKSTESSTPMILVINKIDCAP 446 (564)
Q Consensus 422 l~~~~~~~~~~~PvIvV~NK~DL~~ 446 (564)
+.... ...+.|+++++||+|+..
T Consensus 220 i~~~~--~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 220 IMTNE--FLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp HHHCG--GGTTSEEEEEEECHHHHH
T ss_pred Hhhhh--ccCCCeEEEEEECchhhh
Confidence 44321 124789999999999854
No 206
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.06 E-value=2.3e-11 Score=127.97 Aligned_cols=124 Identities=17% Similarity=0.216 Sum_probs=76.8
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCC------cceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhh
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSE------RAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERS 391 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~------~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~ 391 (564)
+.+|+++|.+|||||||+|+|++.. ...++.+|+||++..... +++ .+.++||||+.+.....+.+..+..
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~~-~~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP--LDE-ESSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE--SSS-SCEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE--ecC-CeEEEeCCCcCcHHHHHHHhhHHHH
Confidence 3689999999999999999999862 345789999998876644 222 3899999999765432222211111
Q ss_pred hh--hhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcc
Q 008468 392 EA--VALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASN 450 (564)
Q Consensus 392 ~~--~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~ 450 (564)
.. .....+.+++++|............+..+ ...+.|+++|+||+|.......
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l------~~~~~~~~~v~nk~d~~~~~~~ 291 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLARFDYV------SGGRRAFTCHFSNRLTIHRTKL 291 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEEEEEE------ESSSEEEEEEECTTSCEEEEEH
T ss_pred HHhccccccCceEEEEcCCCEEEEcceEEEEEe------cCCCceEEEEecCccccccccH
Confidence 11 13678889999988432111111111111 1246799999999998755433
No 207
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.97 E-value=6.8e-10 Score=120.99 Aligned_cols=177 Identities=16% Similarity=0.247 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhh--cCCcEEEEEcCCCCChhHHHHHhh------cCCcceecccc---Ce--------e--
Q 008468 295 IHAMSQDVENALETANYDKLL--QSGLQIAIVGRPNVGKSSLLNAWS------KSERAIVTEIA---GT--------T-- 353 (564)
Q Consensus 295 l~~l~~~l~~ll~~~~~~~~~--~~~ikI~IvG~~nvGKSSLlN~L~------~~~~~~vs~~~---gt--------T-- 353 (564)
++.+.+++.+++......... ..+..|+|+|.+||||||+++.|+ +.+...++.-+ +. +
T Consensus 76 ~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~ 155 (504)
T 2j37_W 76 QHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKA 155 (504)
T ss_dssp HHHHHHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhcc
Confidence 344566666666432211111 345689999999999999999999 66555443311 00 0
Q ss_pred -EEEEEEE---------------EEECCeeeEEEeCCCCCCchh-HHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHH
Q 008468 354 -RDVIEAS---------------VTVCGVPVTLLDTAGIRETDD-IVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDS 416 (564)
Q Consensus 354 -~d~~~~~---------------~~~~g~~i~LiDTpG~~~~~~-~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~ 416 (564)
.++.... +..+++.++||||||...... ..+.. ..... ...+|.+++|+|+..+.. ..
T Consensus 156 ~i~v~~~~~~~dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el--~~~~~-~i~pd~vllVvDa~~g~~--~~ 230 (504)
T 2j37_W 156 RIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEM--LQVAN-AIQPDNIVYVMDASIGQA--CE 230 (504)
T ss_dssp TCCEEECCCCSCHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHH--HHHHH-HHCCSEEEEEEETTCCTT--HH
T ss_pred CceEEccCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHH--HHHHh-hhcCceEEEEEecccccc--HH
Confidence 1111100 011677899999999875432 22221 11111 237999999999988643 33
Q ss_pred HHHHHHHhccccCCCCCCE-EEEEecCCCCCCCcchh---hhh---------cc------cCCcEEEEeccCCCC-HHHH
Q 008468 417 ELLNRIQSNKKSTESSTPM-ILVINKIDCAPSASNEW---NKV---------GN------SFNDHVFTCAVTGQG-IQDL 476 (564)
Q Consensus 417 ~~l~~l~~~~~~~~~~~Pv-IvV~NK~DL~~~~~~~~---~~l---------~~------~~~~~i~iSAktg~G-I~eL 476 (564)
.....+.. ..|+ ++|+||+|......... ..+ .+ .+.+.+.+|+.+|.| +.+|
T Consensus 231 ~~a~~~~~-------~~~i~gvVlNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~L 303 (504)
T 2j37_W 231 AQAKAFKD-------KVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGL 303 (504)
T ss_dssp HHHHHHHH-------HHCCCCEEEECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTT
T ss_pred HHHHHHHh-------hcCceEEEEeCCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHH
Confidence 33333322 1464 89999999875432111 111 00 123345689999999 9999
Q ss_pred HHHHHHH
Q 008468 477 ETAIMKI 483 (564)
Q Consensus 477 ~~~L~~~ 483 (564)
++++.+.
T Consensus 304 ie~i~e~ 310 (504)
T 2j37_W 304 IDKVNEL 310 (504)
T ss_dssp HHHHTTT
T ss_pred HHHHHHH
Confidence 9998765
No 208
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.93 E-value=5.7e-10 Score=117.97 Aligned_cols=94 Identities=31% Similarity=0.316 Sum_probs=73.9
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECC-----------------eeeEEEeCCCCC
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCG-----------------VPVTLLDTAGIR 377 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g-----------------~~i~LiDTpG~~ 377 (564)
...+.+|+|+|++|||||||+|+|++...+.++++|++|++...+.+.+.+ ..+.+|||||+.
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 456789999999999999999999998876789999999998888888876 357899999987
Q ss_pred CchhHHHHhhhhhhhhhhhcCcEEEEEecCCC
Q 008468 378 ETDDIVEKIGVERSEAVALGADVIIMTVSAVD 409 (564)
Q Consensus 378 ~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~ 409 (564)
......+.++ ......++.+|++++|+|+.+
T Consensus 97 ~~~s~~e~L~-~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 97 KGASTGVGLG-NAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCSSSSSC-HHHHHHHTTCSEEEEEEECCC
T ss_pred cCCcHHHHHH-HHHHHHHHHHHHHHHHHhccc
Confidence 4322111111 123455789999999999864
No 209
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.92 E-value=9e-10 Score=117.36 Aligned_cols=128 Identities=16% Similarity=0.253 Sum_probs=73.9
Q ss_pred cCCc--EEEEEcCCCCChhHHHHHhhcCCcc---eeccccCeeEEEEEEEEEECC--eeeEEEeCCCCCCchhH------
Q 008468 316 QSGL--QIAIVGRPNVGKSSLLNAWSKSERA---IVTEIAGTTRDVIEASVTVCG--VPVTLLDTAGIRETDDI------ 382 (564)
Q Consensus 316 ~~~i--kI~IvG~~nvGKSSLlN~L~~~~~~---~vs~~~gtT~d~~~~~~~~~g--~~i~LiDTpG~~~~~~~------ 382 (564)
+.|. +++|+|++|+|||||+|.|+|.... .....++.++..+.......+ ..+.++|++|+....+.
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~ 117 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKP 117 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHH
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhH
Confidence 4454 4999999999999999999997532 111234555554443333333 25789999998743110
Q ss_pred ----HH-Hh--------hhhhhhhhhhcC--c-EEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCC
Q 008468 383 ----VE-KI--------GVERSEAVALGA--D-VIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP 446 (564)
Q Consensus 383 ----ie-~~--------~i~~~~~~l~~a--D-~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~ 446 (564)
+. .+ ++.++.....++ | +++++.|+..+.+..+.++++.+. .+.|+|+|.||+|...
T Consensus 118 i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-------~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 118 IVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-------SKVNIIPIIAKADAIS 190 (427)
T ss_dssp HHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-------SCSEEEEEESCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-------hCCCEEEEEcchhccc
Confidence 00 00 000000011223 3 467788888888888877766653 3689999999999876
Q ss_pred CCcc
Q 008468 447 SASN 450 (564)
Q Consensus 447 ~~~~ 450 (564)
..+.
T Consensus 191 ~~E~ 194 (427)
T 2qag_B 191 KSEL 194 (427)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 5443
No 210
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.89 E-value=1.8e-09 Score=109.48 Aligned_cols=62 Identities=37% Similarity=0.462 Sum_probs=41.4
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCc
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRET 379 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~ 379 (564)
...+++|+++|.||||||||+|+|++.....+++.|++|++... +.+ +..+.++||||+...
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKV-GKELELLDTPGILWP 178 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEE-TTTEEEEECCCCCCS
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE--EEe-CCCEEEEECcCcCCC
Confidence 34568999999999999999999999988889999999988753 333 457899999999754
No 211
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.87 E-value=7.3e-10 Score=113.25 Aligned_cols=132 Identities=14% Similarity=0.126 Sum_probs=85.7
Q ss_pred HHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCC-
Q 008468 333 SLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGW- 411 (564)
Q Consensus 333 SLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~- 411 (564)
+|+++++...+.. ..+.+|.-+.+...+..++ .+.+||| +..+... ...+++++|++|+|+|++++.
T Consensus 32 sl~~~~~~~~f~~-~~~~pTiGd~~~~~~~~~~-~~~iwD~--qer~~~l--------~~~~~~~ad~vilV~D~~~~~~ 99 (301)
T 1u0l_A 32 ERILCKLRGKFRL-QNLKIYVGDRVEYTPDETG-SGVIENV--LHRKNLL--------TKPHVANVDQVILVVTVKMPET 99 (301)
T ss_dssp CEEEEEECGGGTT-TTCCCCTTCEEEEECCCSS-SEEEEEE--CCCSCEE--------TTTTEESCCEEEEEECSSTTCC
T ss_pred cEEEEEEcccccc-cCCCCCCccEEEEEEcCCC-eEEEEEE--cccccee--------eccccccCCEEEEEEeCCCCCC
Confidence 6777777665420 2333343344443333333 7899999 5544433 235689999999999999876
Q ss_pred ChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh-----hhhcccCCcEEEEeccCCCCHHHHHHHHHH
Q 008468 412 TSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW-----NKVGNSFNDHVFTCAVTGQGIQDLETAIMK 482 (564)
Q Consensus 412 s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~-----~~l~~~~~~~i~iSAktg~GI~eL~~~L~~ 482 (564)
++.....|...... .+.|+++|+||+||.+....+. +.+... .+++++||++|.|+++++..+..
T Consensus 100 s~~~l~~~l~~~~~-----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 100 STYIIDKFLVLAEK-----NELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp CHHHHHHHHHHHHH-----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHH-----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECCCCcCHHHHHHHhcC
Confidence 55544444322221 3689999999999976543211 222222 68999999999999999988754
No 212
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.79 E-value=2.7e-09 Score=111.82 Aligned_cols=149 Identities=19% Similarity=0.168 Sum_probs=89.2
Q ss_pred CCCChhHH--HHHhhcCCccee-cc---ccCeeEEEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcE
Q 008468 327 PNVGKSSL--LNAWSKSERAIV-TE---IAGTTRDVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADV 400 (564)
Q Consensus 327 ~nvGKSSL--lN~L~~~~~~~v-s~---~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~ 400 (564)
+.+.|--| +.++...+.... .+ ....|.......+.+++..+.+|||+|++.+...+ ..+++++++
T Consensus 156 ~ds~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w--------~~~f~~~~~ 227 (362)
T 1zcb_A 156 GESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRW--------FECFDSVTS 227 (362)
T ss_dssp CTTHHHHHTTHHHHTSTTCCCCHHHHHHCCCCCSSEEEEEEEETTEEEEEEEECC-------C--------TTSCTTCCE
T ss_pred cccHHHHHHHHHHHhcCCCCCChhhhhhccCCccceEEEEeeeCCeEEEEEeccchhhhhhhH--------HHHhCCCCE
Confidence 45556555 566665543221 00 01123334456677889999999999997665442 356889999
Q ss_pred EEEEecCCC----------CCChhHH-HHHHHHHhccccCCCCCCEEEEEecCCCCCC------------------Ccch
Q 008468 401 IIMTVSAVD----------GWTSEDS-ELLNRIQSNKKSTESSTPMILVINKIDCAPS------------------ASNE 451 (564)
Q Consensus 401 vl~ViD~s~----------~~s~~~~-~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~------------------~~~~ 451 (564)
+|+|+|+++ ..+..+. ..+..+.... ...+.|+|+|+||+|+... ...+
T Consensus 228 iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~--~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~ 305 (362)
T 1zcb_A 228 ILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR--VFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLR 305 (362)
T ss_dssp EEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG--GGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHH
T ss_pred EEEEEECccccccccccccccHHHHHHHHHHHHhcch--hhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHH
Confidence 999999998 2233332 3444444321 1246899999999998521 1111
Q ss_pred h-hhhc------------ccCCcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 452 W-NKVG------------NSFNDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 452 ~-~~l~------------~~~~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
. ..+. .....++++||+++.||+++|+++.+.+.
T Consensus 306 e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~ 352 (362)
T 1zcb_A 306 DVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL 352 (362)
T ss_dssp HHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence 1 2211 12245789999999999999999988764
No 213
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.77 E-value=3.8e-08 Score=104.68 Aligned_cols=157 Identities=19% Similarity=0.184 Sum_probs=90.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC----cceeccccCeeEEEEEEEEEECC-eeeEEEeCCCCCCchhHHHHhhhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE----RAIVTEIAGTTRDVIEASVTVCG-VPVTLLDTAGIRETDDIVEKIGVERS 391 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~----~~~vs~~~gtT~d~~~~~~~~~g-~~i~LiDTpG~~~~~~~ie~~~i~~~ 391 (564)
.+..|+|+|++|||||||+|.|+|.. ..+......+|+..+. ..... ..+.++|++|+.......+.. .++
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v--~q~~~~~~ltv~D~~g~~~~~~~~~~~-L~~- 143 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP--YKHPNIPNVVFWDLPGIGSTNFPPDTY-LEK- 143 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEE--EECSSCTTEEEEECCCGGGSSCCHHHH-HHH-
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEe--ccccccCCeeehHhhcccchHHHHHHH-HHH-
Confidence 44679999999999999999999942 2222222222222111 11122 257899999986322111111 111
Q ss_pred hhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCC---------CCcchh-----hhhc-
Q 008468 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAP---------SASNEW-----NKVG- 456 (564)
Q Consensus 392 ~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~---------~~~~~~-----~~l~- 456 (564)
..+...+.+++ ++... ...+...+...+... ++|+++|.||.|+.- ...... .++.
T Consensus 144 -~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~------~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~ 214 (413)
T 1tq4_A 144 -MKFYEYDFFII-ISATR-FKKNDIDIAKAISMM------KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCV 214 (413)
T ss_dssp -TTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHT------TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHH
T ss_pred -cCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhc------CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHH
Confidence 11344466555 66653 345555555555543 579999999999741 111111 2221
Q ss_pred ----c---cCCcEEEEec--cCCCCHHHHHHHHHHHhhc
Q 008468 457 ----N---SFNDHVFTCA--VTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 457 ----~---~~~~~i~iSA--ktg~GI~eL~~~L~~~l~~ 486 (564)
+ ....+|.+|+ .++.|+++|.+.+.+.+..
T Consensus 215 ~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 215 NTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp HHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred HHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 1 1346799999 6777899999999988743
No 214
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.73 E-value=1.3e-08 Score=109.05 Aligned_cols=168 Identities=15% Similarity=0.238 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHhhhh-hhhcCCcEEEEEcCCCCChhHHHHHhhc------CCcceeccccC--------------eeE
Q 008468 296 HAMSQDVENALETANYD-KLLQSGLQIAIVGRPNVGKSSLLNAWSK------SERAIVTEIAG--------------TTR 354 (564)
Q Consensus 296 ~~l~~~l~~ll~~~~~~-~~~~~~ikI~IvG~~nvGKSSLlN~L~~------~~~~~vs~~~g--------------tT~ 354 (564)
+.+.+++..++...... .....+..|+++|.+||||||+++.|.. .....+..-+. ...
T Consensus 77 ~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gv 156 (443)
T 3dm5_A 77 KIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHI 156 (443)
T ss_dssp HHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTC
T ss_pred HHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCC
Confidence 34555555555431111 1112357899999999999999999873 33322221000 000
Q ss_pred EEEEE---------------EEEECCeeeEEEeCCCCCCchh-HHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHH
Q 008468 355 DVIEA---------------SVTVCGVPVTLLDTAGIRETDD-IVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSEL 418 (564)
Q Consensus 355 d~~~~---------------~~~~~g~~i~LiDTpG~~~~~~-~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~ 418 (564)
++... ....++..+.|+||||...... ..... +.......+|.+++|+|++.+. .....
T Consensus 157 pv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el---~~i~~~~~pd~vlLVvDA~~gq--~a~~~ 231 (443)
T 3dm5_A 157 EVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEM---KQISNVIHPHEVILVIDGTIGQ--QAYNQ 231 (443)
T ss_dssp EEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHH---HHHHHHHCCSEEEEEEEGGGGG--GHHHH
T ss_pred cEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHH---HHHHHhhcCceEEEEEeCCCch--hHHHH
Confidence 11100 0001347899999999765432 22221 1112245689999999998642 22233
Q ss_pred HHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcccCCcEEEEeccCCCCHHHH
Q 008468 419 LNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDL 476 (564)
Q Consensus 419 l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL 476 (564)
...+... -.+..+|+||+|.................|+.+++. |+++++|
T Consensus 232 a~~f~~~------~~i~gVIlTKlD~~~~gG~~ls~~~~~g~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 232 ALAFKEA------TPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGT--GEKIDDI 281 (443)
T ss_dssp HHHHHHS------CTTEEEEEECCSSCSSHHHHHHHHHTTCCCEEEEEC--SSSTTCE
T ss_pred HHHHHhh------CCCeEEEEECCCCcccccHHHHHHHHHCCCEEEEEc--CCChHHh
Confidence 3333322 235678999999865432211112223456777775 7877765
No 215
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.69 E-value=1.1e-08 Score=108.45 Aligned_cols=121 Identities=20% Similarity=0.225 Sum_probs=81.9
Q ss_pred EEEEEEEEECCeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCC----------CCChhHH-HHHHHHH
Q 008468 355 DVIEASVTVCGVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVD----------GWTSEDS-ELLNRIQ 423 (564)
Q Consensus 355 d~~~~~~~~~g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~----------~~s~~~~-~~l~~l~ 423 (564)
......+.+++..+.+|||+|++.+... +..++++++++|+|+|+++ ..++.+. .++..+.
T Consensus 206 Gi~~~~~~~~~v~l~iwDtaGQe~~r~~--------w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~ 277 (402)
T 1azs_C 206 GIFETKFQVDKVNFHMFDVGGQRDERRK--------WIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIW 277 (402)
T ss_dssp SEEEEEEEETTEEEEEEEECCSGGGGGG--------GGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHH
T ss_pred eeEEEEeecCCccceecccchhhhhhhh--------hHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHH
Confidence 3444667788999999999999876654 3456899999999999998 4444443 2333333
Q ss_pred hccccCCCCCCEEEEEecCCCCCCCc--------------------------------chh-hhh-----cc--------
Q 008468 424 SNKKSTESSTPMILVINKIDCAPSAS--------------------------------NEW-NKV-----GN-------- 457 (564)
Q Consensus 424 ~~~~~~~~~~PvIvV~NK~DL~~~~~--------------------------------~~~-~~l-----~~-------- 457 (564)
.. ....+.|+|+|+||+|+..... ... ..+ ..
T Consensus 278 ~~--~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~ 355 (402)
T 1azs_C 278 NN--RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDG 355 (402)
T ss_dssp TC--TTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTT
T ss_pred hc--ccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhcccccc
Confidence 32 1235789999999999843210 010 111 11
Q ss_pred -cCCcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 458 -SFNDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 458 -~~~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
....++++||+++.||+++|+.+.+.+.
T Consensus 356 ~~~~~~~~TSA~d~~nV~~vF~~v~~~I~ 384 (402)
T 1azs_C 356 RHYCYPHFTCAVDTENIRRVFNDCRDIIQ 384 (402)
T ss_dssp SSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred CcccEEEEEEeecCcCHHHHHHHHHHHHH
Confidence 1224578999999999999999887663
No 216
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.68 E-value=4.2e-08 Score=98.69 Aligned_cols=124 Identities=24% Similarity=0.325 Sum_probs=73.1
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceec-------cccCeeE-EEEEEEEEECC--eeeEEEeCCCCCCch------hH
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVT-------EIAGTTR-DVIEASVTVCG--VPVTLLDTAGIRETD------DI 382 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs-------~~~gtT~-d~~~~~~~~~g--~~i~LiDTpG~~~~~------~~ 382 (564)
++++|+|++|+|||||+|.|+|......+ +.+.++. ..+.......+ ..++++|++|+.... ..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 68999999999999999999985432211 1122111 11111111122 257899999986321 12
Q ss_pred HHHhhhhhhhh--------------hhhcCcEEEEEecCC-CCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCC
Q 008468 383 VEKIGVERSEA--------------VALGADVIIMTVSAV-DGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPS 447 (564)
Q Consensus 383 ie~~~i~~~~~--------------~l~~aD~vl~ViD~s-~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~ 447 (564)
+..+....... .+..++++++++|.. .+.+..+.+.+..+.. ..++|+|+||+|....
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~-------~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSK-------VVNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHT-------TSEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHh-------cCcEEEEEeccccCCH
Confidence 22222111111 234578999999965 6778888777776653 2789999999998765
Q ss_pred Cc
Q 008468 448 AS 449 (564)
Q Consensus 448 ~~ 449 (564)
.+
T Consensus 156 ~e 157 (270)
T 3sop_A 156 EE 157 (270)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 217
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.63 E-value=1.8e-08 Score=111.65 Aligned_cols=100 Identities=20% Similarity=0.221 Sum_probs=61.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEE-------ECCeeeEEEeCCCCCCchhHHHHhhhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVT-------VCGVPVTLLDTAGIRETDDIVEKIGVE 389 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~-------~~g~~i~LiDTpG~~~~~~~ie~~~i~ 389 (564)
..++|+|+|.||||||||+|+|+|....+ +++++|++....... ..+..+.|+||||+.+....-......
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~ 114 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSW 114 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHH
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHH
Confidence 34789999999999999999999987543 555555444333322 256789999999998543200000111
Q ss_pred h-hhhhhhcCcEEEEEecCCCCCChhHHHHHHH
Q 008468 390 R-SEAVALGADVIIMTVSAVDGWTSEDSELLNR 421 (564)
Q Consensus 390 ~-~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~ 421 (564)
. +...+- ++ ++|||+....+..+...+..
T Consensus 115 ~fala~ll-ss--~lv~n~~~~i~~~dl~~l~~ 144 (592)
T 1f5n_A 115 IFALAVLL-SS--TFVYNSIGTINQQAMDQLYY 144 (592)
T ss_dssp HHHHHHHH-CS--EEEEEEESCSSHHHHHTTHH
T ss_pred HHHHHHHh-cC--eEEEECCCCccHHHHHHHHH
Confidence 1 111122 33 56677777777777655443
No 218
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.61 E-value=1.2e-08 Score=106.55 Aligned_cols=121 Identities=16% Similarity=0.150 Sum_probs=77.2
Q ss_pred EEEEEEEEEC------CeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCC----------CCCChhHH-H
Q 008468 355 DVIEASVTVC------GVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAV----------DGWTSEDS-E 417 (564)
Q Consensus 355 d~~~~~~~~~------g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s----------~~~s~~~~-~ 417 (564)
...+..+.++ ...+.+|||+|++.+...+ ..++++++++|+|+|++ +..+..+. .
T Consensus 166 Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~--------~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~ 237 (354)
T 2xtz_A 166 GVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKW--------IHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKE 237 (354)
T ss_dssp SEEEEEECCCCE------EEEEEEECCSTTGGGGT--------GGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHH
T ss_pred ceeeEEEEeccCccccceeeEEEECCCchhhhHHH--------HHHhCCCCEEEEEEECcccccccccccchhHHHHHHH
Confidence 3444455553 4678999999998776553 45689999999999997 33333332 2
Q ss_pred HHHHHHhccccCCCCCCEEEEEecCCCCCCCc-----------------------chh-hhh-cc---------------
Q 008468 418 LLNRIQSNKKSTESSTPMILVINKIDCAPSAS-----------------------NEW-NKV-GN--------------- 457 (564)
Q Consensus 418 ~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~-----------------------~~~-~~l-~~--------------- 457 (564)
.+..+.... ...+.|+|+|+||+|+..... .+. ..+ ..
T Consensus 238 ~~~~i~~~~--~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~ 315 (354)
T 2xtz_A 238 LFDWVLKQP--CFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRV 315 (354)
T ss_dssp HHHHHHTCG--GGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTT
T ss_pred HHHHHHhcc--ccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhcccccccc
Confidence 333333321 124689999999999842110 011 112 11
Q ss_pred -cCCcEEEEeccCCCCHHHHHHHHHHHhh
Q 008468 458 -SFNDHVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 458 -~~~~~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
....++++||+++.||+++|+.+.+.+.
T Consensus 316 ~~~~~~~eTSA~d~~nV~~vF~~v~~~I~ 344 (354)
T 2xtz_A 316 DRVFKIYRTTALDQKLVKKTFKLVDETLR 344 (354)
T ss_dssp TSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEEEeecchhHHHHHHHHHHHHH
Confidence 1123589999999999999999988663
No 219
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.46 E-value=5.2e-08 Score=97.56 Aligned_cols=58 Identities=31% Similarity=0.443 Sum_probs=39.8
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEEEEEEECCeeeEEEeCCCCCCc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTVCGVPVTLLDTAGIRET 379 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG~~~~ 379 (564)
++|+++|.+|||||||+|+|.+.....+++.+|+|+.... +.+ +..+.+|||||+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQW--FSL-ENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCE--EEC-TTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEE--EEe-CCCEEEEECCCcccC
Confidence 6999999999999999999999887778888999886532 222 357899999999864
No 220
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.37 E-value=1.2e-07 Score=101.65 Aligned_cols=117 Identities=16% Similarity=0.241 Sum_probs=68.1
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC------Ccceecc------------------------ccCeeEEEEE----EEEEE
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS------ERAIVTE------------------------IAGTTRDVIE----ASVTV 363 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~------~~~~vs~------------------------~~gtT~d~~~----~~~~~ 363 (564)
+..|+++|++||||||+++.|... ....+.. ..+++++... ..-.+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 457999999999999999999863 2222111 0112222100 00012
Q ss_pred CCeeeEEEeCCCCCCchhH-HHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCC-C-EEEEEe
Q 008468 364 CGVPVTLLDTAGIRETDDI-VEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESST-P-MILVIN 440 (564)
Q Consensus 364 ~g~~i~LiDTpG~~~~~~~-ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~-P-vIvV~N 440 (564)
++..+.|+||||....... .... .....+..+|.+++|+|+..+. +.......+. ... | ..+|+|
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l---~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~~-------~~~~~i~gvVln 246 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEM---KQIKEITNPDEIILVIDGTIGQ--QAGIQAKAFK-------EAVGEIGSIIVT 246 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHH---HHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHHH-------TTSCSCEEEEEE
T ss_pred hCCCEEEEcCCCCccccHHHHHHH---HHHHHHhcCcceeEEeeccccH--HHHHHHHHHh-------hcccCCeEEEEe
Confidence 5678999999998754322 2211 1112234789999999987653 2222222221 124 5 889999
Q ss_pred cCCCCC
Q 008468 441 KIDCAP 446 (564)
Q Consensus 441 K~DL~~ 446 (564)
|+|...
T Consensus 247 K~D~~~ 252 (432)
T 2v3c_C 247 KLDGSA 252 (432)
T ss_dssp CSSSCS
T ss_pred CCCCcc
Confidence 999864
No 221
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.37 E-value=3.1e-07 Score=94.91 Aligned_cols=148 Identities=22% Similarity=0.266 Sum_probs=77.3
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCc------ceec-ccc--C-----------eeEEEEEEEE--------------
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSER------AIVT-EIA--G-----------TTRDVIEASV-------------- 361 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~------~~vs-~~~--g-----------tT~d~~~~~~-------------- 361 (564)
..+-.|+++|++||||||+++.|.+... .+.. +.. + ....++....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 3567899999999999999999986321 1100 000 0 0000000000
Q ss_pred -EECCeeeEEEeCCCCCCc-hhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEE
Q 008468 362 -TVCGVPVTLLDTAGIRET-DDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVI 439 (564)
Q Consensus 362 -~~~g~~i~LiDTpG~~~~-~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~ 439 (564)
...+..+.++||+|.... ....+.+.. ....-..|-.++++|+..+. +-.+....+.... ...++++
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~---i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~------~it~iil 275 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKK---IARVTKPNLVIFVGDALAGN--AIVEQARQFNEAV------KIDGIIL 275 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHH---HHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHS------CCCEEEE
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHH---HHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhc------CCCEEEE
Confidence 002345778999998643 223332211 11123478899999987642 2223333333221 2347889
Q ss_pred ecCCCCCCCcchhhhhcccCCcEEEEeccCCCCHHHH
Q 008468 440 NKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDL 476 (564)
Q Consensus 440 NK~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL 476 (564)
||.|.................++..++ +|++++++
T Consensus 276 TKlD~~a~~G~~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 276 TKLDADARGGAALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp ECGGGCSCCHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred eCcCCccchhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence 999964322211122222335777777 67776554
No 222
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.29 E-value=1.7e-06 Score=83.25 Aligned_cols=95 Identities=16% Similarity=0.008 Sum_probs=63.6
Q ss_pred hhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccC--CCCCCEEEEEecC-CCCCCCcchh--hhhc----ccCCc
Q 008468 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKST--ESSTPMILVINKI-DCAPSASNEW--NKVG----NSFND 461 (564)
Q Consensus 391 ~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~--~~~~PvIvV~NK~-DL~~~~~~~~--~~l~----~~~~~ 461 (564)
++.|+.++|++|||+|+++....+..+.+..+....... ..+.|++|.+||. |+........ +.+. .....
T Consensus 119 Wr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~R~W~ 198 (227)
T 3l82_B 119 IQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWL 198 (227)
T ss_dssp HHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEE
T ss_pred HHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCCCCEE
Confidence 457899999999999999865443333343332222111 2578999999996 7765443332 1111 22345
Q ss_pred EEEEeccCCCCHHHHHHHHHHHhh
Q 008468 462 HVFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 462 ~i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
+..|||++|+|+.+-++||.+.+.
T Consensus 199 Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 199 VQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp EEEEETTTCTTHHHHHHHHTTTTT
T ss_pred EEEeECCCCcCHHHHHHHHHHHHH
Confidence 789999999999999999987664
No 223
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.28 E-value=5.5e-07 Score=96.24 Aligned_cols=167 Identities=16% Similarity=0.203 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHhhhhh--hhcCCcEEEEEcCCCCChhHHHHHhh------cCCcceec----------------cccC
Q 008468 296 HAMSQDVENALETANYDK--LLQSGLQIAIVGRPNVGKSSLLNAWS------KSERAIVT----------------EIAG 351 (564)
Q Consensus 296 ~~l~~~l~~ll~~~~~~~--~~~~~ikI~IvG~~nvGKSSLlN~L~------~~~~~~vs----------------~~~g 351 (564)
+.+.+++..++....... ....+..|+++|++||||||++..|. +.....+. ...+
T Consensus 73 ~~v~~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~g 152 (433)
T 3kl4_A 73 SIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIG 152 (433)
T ss_dssp HHHHHHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcC
Confidence 445556665554321111 11235678999999999999999987 33222211 0001
Q ss_pred eeEEEEE---E----------EEEECCeeeEEEeCCCCCC--ch-hHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhH
Q 008468 352 TTRDVIE---A----------SVTVCGVPVTLLDTAGIRE--TD-DIVEKIGVERSEAVALGADVIIMTVSAVDGWTSED 415 (564)
Q Consensus 352 tT~d~~~---~----------~~~~~g~~i~LiDTpG~~~--~~-~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~ 415 (564)
....... . .....+..+.|+||||... .. ...... ... .....+|.+++|+|+..+. +.
T Consensus 153 v~~~~~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el--~~i-~~~~~pd~vlLVlDa~~gq--~a 227 (433)
T 3kl4_A 153 VQVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEM--KEM-YDVLKPDDVILVIDASIGQ--KA 227 (433)
T ss_dssp CCEECCTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHH--HHH-HHHHCCSEEEEEEEGGGGG--GG
T ss_pred CceeeccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHH--HHH-HHhhCCcceEEEEeCccch--HH
Confidence 1000000 0 0001357789999999644 22 222211 111 1133579999999998642 22
Q ss_pred HHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchhhhhcccCCcEEEEeccCCCCHHH
Q 008468 416 SELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQD 475 (564)
Q Consensus 416 ~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~e 475 (564)
......+... -.+..+|+||+|.................|+.+++. |+++++
T Consensus 228 ~~~a~~f~~~------~~~~gVIlTKlD~~a~~G~als~~~~~g~Pi~fig~--Ge~v~d 279 (433)
T 3kl4_A 228 YDLASRFHQA------SPIGSVIITKMDGTAKGGGALSAVVATGATIKFIGT--GEKIDE 279 (433)
T ss_dssp HHHHHHHHHH------CSSEEEEEECGGGCSCHHHHHHHHHHHTCEEEEEEC--CSSSSC
T ss_pred HHHHHHHhcc------cCCcEEEEecccccccchHHHHHHHHHCCCEEEEEC--CCChHh
Confidence 2333333322 135789999999764322111111223457777775 777653
No 224
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.21 E-value=1.1e-06 Score=89.74 Aligned_cols=85 Identities=19% Similarity=0.155 Sum_probs=59.5
Q ss_pred hhhhcCcEEEEEecCCCCC-ChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCc---ch-hhh-hcccCCcEEEEe
Q 008468 393 AVALGADVIIMTVSAVDGW-TSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS---NE-WNK-VGNSFNDHVFTC 466 (564)
Q Consensus 393 ~~l~~aD~vl~ViD~s~~~-s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~---~~-~~~-l~~~~~~~i~iS 466 (564)
.++.++|++++|+|++++. ++...+.|-..... .++|+++|+||+|+.+... .. ..+ +.....+++++|
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~S 149 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-----FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVS 149 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-----CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEE
Confidence 4689999999999999875 55544333222221 3689999999999976532 11 112 222335799999
Q ss_pred ccCCCCHHHHHHHHHH
Q 008468 467 AVTGQGIQDLETAIMK 482 (564)
Q Consensus 467 Aktg~GI~eL~~~L~~ 482 (564)
|++|.|+++|++.+..
T Consensus 150 A~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 150 AKTGEGIDELVDYLEG 165 (302)
T ss_dssp TTTCTTHHHHHHHTTT
T ss_pred CCCCCCHHHHHhhccC
Confidence 9999999999887653
No 225
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.03 E-value=5.4e-06 Score=83.71 Aligned_cols=86 Identities=22% Similarity=0.233 Sum_probs=62.8
Q ss_pred hhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcccCCcEEEEecc
Q 008468 391 SEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGNSFNDHVFTCAV 468 (564)
Q Consensus 391 ~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~~~~~~i~iSAk 468 (564)
....+..+|++++|+|+.++.+..+.. +..+. .++|+++|+||+|+.+....+. +.+.....+++++||+
T Consensus 17 ~~~~l~~aDvVl~VvDAr~p~~~~~~~-l~~~l-------~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~ 88 (282)
T 1puj_A 17 VTEKLKLIDIVYELVDARIPMSSRNPM-IEDIL-------KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSV 88 (282)
T ss_dssp HHHHGGGCSEEEEEEETTSTTTTSCHH-HHHHC-------SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTT
T ss_pred HHHHHhhCCEEEEEEeCCCCCccCCHH-HHHHH-------CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECC
Confidence 345689999999999999987765432 23332 2689999999999987432221 2232333578999999
Q ss_pred CCCCHHHHHHHHHHHh
Q 008468 469 TGQGIQDLETAIMKIV 484 (564)
Q Consensus 469 tg~GI~eL~~~L~~~l 484 (564)
+|.|+++|++.+.+.+
T Consensus 89 ~~~gi~~L~~~i~~~l 104 (282)
T 1puj_A 89 NGQGLNQIVPASKEIL 104 (282)
T ss_dssp TCTTGGGHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHH
Confidence 9999999998887765
No 226
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.02 E-value=1.2e-05 Score=80.96 Aligned_cols=95 Identities=15% Similarity=-0.024 Sum_probs=63.3
Q ss_pred hhhhhhcCcEEEEEecCCCCCChhHHHHHH---HHHhccccCCCCCCEEEEEec-CCCCCCCcchh--hhhc----ccCC
Q 008468 391 SEAVALGADVIIMTVSAVDGWTSEDSELLN---RIQSNKKSTESSTPMILVINK-IDCAPSASNEW--NKVG----NSFN 460 (564)
Q Consensus 391 ~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~---~l~~~~~~~~~~~PvIvV~NK-~DL~~~~~~~~--~~l~----~~~~ 460 (564)
.+.|+.++|++|||+|+++....+..+.+. .++... ....+.|++|.+|| .|+.......+ +.+. ....
T Consensus 204 Wr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~-~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~r~W 282 (312)
T 3l2o_B 204 IQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPA-FGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPW 282 (312)
T ss_dssp HHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHH-HHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCE
T ss_pred HHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcch-hhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccCCCcE
Confidence 356799999999999999875443333222 222210 00247899999997 58865544332 2111 1223
Q ss_pred cEEEEeccCCCCHHHHHHHHHHHhhc
Q 008468 461 DHVFTCAVTGQGIQDLETAIMKIVGL 486 (564)
Q Consensus 461 ~~i~iSAktg~GI~eL~~~L~~~l~~ 486 (564)
.+..|||++|+|+.+-+++|.+.+..
T Consensus 283 ~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 283 LVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred EEEecccCCCcCHHHHHHHHHHHHHh
Confidence 57899999999999999999988743
No 227
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.86 E-value=3.1e-05 Score=78.76 Aligned_cols=145 Identities=18% Similarity=0.257 Sum_probs=77.9
Q ss_pred CcEEEEEcCCCCChhHHHHHhhc------CCcceeccc---cCe-----------eEEEEEE---------------EEE
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSK------SERAIVTEI---AGT-----------TRDVIEA---------------SVT 362 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~------~~~~~vs~~---~gt-----------T~d~~~~---------------~~~ 362 (564)
+-.|+++|++|+||||+++.|.+ .....+..- +.. ..+.... ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 55789999999999999999873 222211110 000 0011100 001
Q ss_pred ECCeeeEEEeCCCCCC--chh-HHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCC-EEEE
Q 008468 363 VCGVPVTLLDTAGIRE--TDD-IVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTP-MILV 438 (564)
Q Consensus 363 ~~g~~i~LiDTpG~~~--~~~-~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~P-vIvV 438 (564)
.+++.+.|+||||... ..+ ..+... .......+|.+++|+|+..+ ....+..+.+.. ..| ..+|
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~---~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-------~~~i~gvV 245 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMK---NIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-------ASKIGTII 245 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHH---HHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-------TCTTEEEE
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHH---HHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-------hCCCCEEE
Confidence 1566799999999876 432 221110 11224578999999998753 222333333222 245 6789
Q ss_pred EecCCCCCCCcchhhhhcccCCcEEEEeccCCCCHHHH
Q 008468 439 INKIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDL 476 (564)
Q Consensus 439 ~NK~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL 476 (564)
+||+|.................++..++ +|++++++
T Consensus 246 lnk~D~~~~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 246 ITKMDGTAKGGGALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp EECGGGCTTHHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred EeCCCCCcchHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 9999975432111111112235666666 57776554
No 228
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.78 E-value=3.5e-05 Score=82.56 Aligned_cols=99 Identities=14% Similarity=0.143 Sum_probs=53.8
Q ss_pred cEEEEEcCCCCChhHHHHHhhcC---------------CcceeccccCeeEEEEEEEEEE---------C--CeeeEEEe
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKS---------------ERAIVTEIAGTTRDVIEASVTV---------C--GVPVTLLD 372 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~---------------~~~~vs~~~gtT~d~~~~~~~~---------~--g~~i~LiD 372 (564)
.-|+|+|++++|||||+|+|++. .....+.. ++|+..+.+.+.+ + ...+.++|
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~-~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllD 146 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR-GGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSC-CSSCCCCCEEEEESSCEEEECSSSCEEEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCC-CCCCCceeEEEEecCccccccCCCCcceEEEEc
Confidence 45899999999999999999974 22222222 2333333332222 1 25689999
Q ss_pred CCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHH
Q 008468 373 TAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNR 421 (564)
Q Consensus 373 TpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~ 421 (564)
|+|+.+.....+. ........+--++++|+-. .......+.+.+..
T Consensus 147 TeG~~~~~~~~~~-d~~ifal~~lLSs~~IyN~--~~~i~~~~l~~L~~ 192 (447)
T 3q5d_A 147 TQGTFDSQSTLRD-SATVFALSTMISSIQVYNL--SQNVQEDDLQHLQL 192 (447)
T ss_dssp EECCCSSHHHHHH-HHHHHHHHHHHCSEEEEEE--SSSCCHHHHHHHHH
T ss_pred CCcccccccchhh-hHHHHHHHHHHhhHHHHhh--cccccHHHHHHHHH
Confidence 9999866432111 1111111122356655544 33445555554443
No 229
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.66 E-value=4.8e-05 Score=79.67 Aligned_cols=85 Identities=21% Similarity=0.201 Sum_probs=57.6
Q ss_pred hhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh------hh-hcccC---CcE
Q 008468 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW------NK-VGNSF---NDH 462 (564)
Q Consensus 393 ~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~------~~-l~~~~---~~~ 462 (564)
.+...++++++|+|++++.+....+ +.... .++|+++|+||+|+.+...... .. +.... .++
T Consensus 67 ~~~~~~~lil~VvD~~d~~~s~~~~-l~~~l-------~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v 138 (369)
T 3ec1_A 67 RIGESKALVVNIVDIFDFNGSFIPG-LPRFA-------ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDV 138 (369)
T ss_dssp HHHHHCCEEEEEEETTCSGGGCCSS-HHHHC-------TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEE
T ss_pred HhhccCcEEEEEEECCCCCCchhhH-HHHHh-------CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccE
Confidence 3457889999999999865321111 12111 2679999999999986542111 11 22222 368
Q ss_pred EEEeccCCCCHHHHHHHHHHHhh
Q 008468 463 VFTCAVTGQGIQDLETAIMKIVG 485 (564)
Q Consensus 463 i~iSAktg~GI~eL~~~L~~~l~ 485 (564)
+.+||++|.|+++|++.+.+...
T Consensus 139 ~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 139 CLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHhhcc
Confidence 99999999999999999987664
No 230
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.64 E-value=6e-05 Score=78.90 Aligned_cols=84 Identities=21% Similarity=0.216 Sum_probs=55.9
Q ss_pred hhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcch-h-hh-----hcccCC---cE
Q 008468 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE-W-NK-----VGNSFN---DH 462 (564)
Q Consensus 393 ~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~-~-~~-----l~~~~~---~~ 462 (564)
.+.+.+|++++|+|++++. ..+...+... ..++|+++|+||+|+.+..... . ++ +..... ++
T Consensus 65 ~i~~~~~~il~VvD~~d~~----~~~~~~l~~~----~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v 136 (368)
T 3h2y_A 65 GIGKSDALVVKIVDIFDFN----GSWLPGLHRF----VGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDV 136 (368)
T ss_dssp HHHHSCCEEEEEEETTSHH----HHCCTTHHHH----SSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEE
T ss_pred HHhccCcEEEEEEECCCCc----ccHHHHHHHH----hCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccE
Confidence 4467888999999998731 1111112221 1268999999999997654211 1 11 112222 68
Q ss_pred EEEeccCCCCHHHHHHHHHHHh
Q 008468 463 VFTCAVTGQGIQDLETAIMKIV 484 (564)
Q Consensus 463 i~iSAktg~GI~eL~~~L~~~l 484 (564)
+.+||++|.|+++|++.|.+..
T Consensus 137 ~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 137 FLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCcCHHHHHhhhhhhc
Confidence 9999999999999999998765
No 231
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.55 E-value=0.00026 Score=78.91 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|+|+|+.|||||||++.|.|-.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 359999999999999999999964
No 232
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.49 E-value=2.8e-05 Score=77.61 Aligned_cols=81 Identities=10% Similarity=0.061 Sum_probs=57.3
Q ss_pred hhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcchh--hhhcccCCcEEEEeccC
Q 008468 392 EAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNEW--NKVGNSFNDHVFTCAVT 469 (564)
Q Consensus 392 ~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~~--~~l~~~~~~~i~iSAkt 469 (564)
...+.++|++++|+|+.++.+..... +. +. ++|.++|+||+||.+...... +.+.+...++ .+||++
T Consensus 16 ~~~l~~~D~vl~VvDar~P~~~~~~~-l~-ll--------~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~ 84 (262)
T 3cnl_A 16 KDLLRLVNTVVEVRDARAPFATSAYG-VD-FS--------RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKG 84 (262)
T ss_dssp HHHHTTCSEEEEEEETTSTTTTSCTT-SC-CT--------TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTT
T ss_pred HHHHhhCCEEEEEeeCCCCCcCcChH-HH-hc--------CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECCC
Confidence 45589999999999999887654321 11 11 579999999999987432211 2232333467 999999
Q ss_pred CCCHHHHHHHHHHH
Q 008468 470 GQGIQDLETAIMKI 483 (564)
Q Consensus 470 g~GI~eL~~~L~~~ 483 (564)
|.|+++|++.+.+.
T Consensus 85 ~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 85 EPRKVLLKKLSFDR 98 (262)
T ss_dssp SCHHHHHHHHCCCT
T ss_pred CcCHHHHHHHHHHh
Confidence 99999998887653
No 233
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.49 E-value=0.0002 Score=72.91 Aligned_cols=121 Identities=20% Similarity=0.296 Sum_probs=64.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCc------ceec-cc--cC-----------eeEEEEEEE------------E---
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSER------AIVT-EI--AG-----------TTRDVIEAS------------V--- 361 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~------~~vs-~~--~g-----------tT~d~~~~~------------~--- 361 (564)
.+-.|+|+|++|||||||++.|.+... .... +. +. ....++... +
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999985311 0000 00 00 000011000 0
Q ss_pred EECCeeeEEEeCCCCCCch-hHHHHh---hhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEE
Q 008468 362 TVCGVPVTLLDTAGIRETD-DIVEKI---GVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMIL 437 (564)
Q Consensus 362 ~~~g~~i~LiDTpG~~~~~-~~ie~~---~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIv 437 (564)
...+..+.++||+|..... ...... ....++.....++.+++++|+..+. ...+.+..+.... + ..++
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~--~~~~~~~~~~~~~-----~-~t~i 252 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAV-----G-LTGV 252 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHH-----C-CSEE
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH--HHHHHHHHHHHHc-----C-CcEE
Confidence 0123456789999975432 222222 1122223356688889999987653 2223333333221 2 3578
Q ss_pred EEecCCCC
Q 008468 438 VINKIDCA 445 (564)
Q Consensus 438 V~NK~DL~ 445 (564)
++||.|..
T Consensus 253 ivTh~d~~ 260 (304)
T 1rj9_A 253 IVTKLDGT 260 (304)
T ss_dssp EEECTTSS
T ss_pred EEECCccc
Confidence 89999864
No 234
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.30 E-value=0.0011 Score=71.58 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhhh--hhhcCCcEEEEEcCCCCChhHHHHHhhc
Q 008468 298 MSQDVENALETANYD--KLLQSGLQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 298 l~~~l~~ll~~~~~~--~~~~~~ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
+.+.+..++...... -....+-.|+|+|+.|||||||++.|.+
T Consensus 271 l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 271 LKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp HHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHH
Confidence 344455555432211 1134566799999999999999999986
No 235
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.13 E-value=0.0007 Score=72.30 Aligned_cols=118 Identities=18% Similarity=0.265 Sum_probs=65.6
Q ss_pred CcEEEEEcCCCCChhHHHHHhh-------cCCcceecccc---C-----------eeEEEEEE---------------EE
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWS-------KSERAIVTEIA---G-----------TTRDVIEA---------------SV 361 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~-------~~~~~~vs~~~---g-----------tT~d~~~~---------------~~ 361 (564)
+..|+++|.+||||||+...|. |.....+.--+ . ...+++.. ..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~ 179 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999987 44332211111 0 00111110 00
Q ss_pred EECCeeeEEEeCCCCCCchh-HHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCC-EEEEE
Q 008468 362 TVCGVPVTLLDTAGIRETDD-IVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTP-MILVI 439 (564)
Q Consensus 362 ~~~g~~i~LiDTpG~~~~~~-~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~P-vIvV~ 439 (564)
..+++.+.|+||||...... ..... . ....+..+|.+++|+|+..+.. .......+.. ..+ .-+|+
T Consensus 180 ~~~~~D~VIIDTpG~l~~~~~l~~~L--~-~~~~~~~p~~vllVvda~~g~~--~~~~~~~f~~-------~l~i~gvVl 247 (433)
T 2xxa_A 180 KLKFYDVLLVDTAGRLHVDEAMMDEI--K-QVHASINPVETLFVVDAMTGQD--AANTAKAFNE-------ALPLTGVVL 247 (433)
T ss_dssp HHTTCSEEEEECCCCCTTCHHHHHHH--H-HHHHHSCCSEEEEEEETTBCTT--HHHHHHHHHH-------HSCCCCEEE
T ss_pred HhCCCCEEEEECCCcccccHHHHHHH--H-HHHHhhcCcceeEEeecchhHH--HHHHHHHHhc-------cCCCeEEEE
Confidence 11467899999999765432 22211 1 1122447899999999976522 2222222221 123 34699
Q ss_pred ecCCCCCC
Q 008468 440 NKIDCAPS 447 (564)
Q Consensus 440 NK~DL~~~ 447 (564)
||+|....
T Consensus 248 nK~D~~~~ 255 (433)
T 2xxa_A 248 TKVDGDAR 255 (433)
T ss_dssp ECTTSSSC
T ss_pred ecCCCCcc
Confidence 99997543
No 236
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.10 E-value=0.00012 Score=74.77 Aligned_cols=58 Identities=34% Similarity=0.343 Sum_probs=33.8
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCcceecccc-------CeeEEEEEEEEEECCeeeEEEeCCCCCCc
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIA-------GTTRDVIEASVTVCGVPVTLLDTAGIRET 379 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~-------gtT~d~~~~~~~~~g~~i~LiDTpG~~~~ 379 (564)
+-.++|+|++|||||||+|.|.+........+. +||+... .+... .-.++||||+..+
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~--~~~~~--~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE--LIHTS--GGLVADTPGFSSL 237 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCC--EEEET--TEEEESSCSCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHH--HhhcC--CEEEecCCCcccc
Confidence 457999999999999999999987644333332 3443321 12222 2478999998753
No 237
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.02 E-value=0.011 Score=60.48 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=20.9
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhc
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
..+-.|+|+|++|+||||++..|.+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445689999999999999988865
No 238
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.88 E-value=0.00021 Score=72.92 Aligned_cols=83 Identities=19% Similarity=0.184 Sum_probs=55.6
Q ss_pred hhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCc----ch-h-hhhcccCCcEEEEe
Q 008468 393 AVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSAS----NE-W-NKVGNSFNDHVFTC 466 (564)
Q Consensus 393 ~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~----~~-~-~~l~~~~~~~i~iS 466 (564)
..+.++|.+++|+|+..+....+ .+.+++... ...++|.++|+||+||.+... .. . +.+.....+++.+|
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~--~i~r~L~~~--~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~s 157 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTA--LLDRFLVLV--EANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTS 157 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHH--HHHHHHHHH--HTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECC
T ss_pred HHHHhCCEEEEEEeCCCCCCCHH--HHHHHHHHH--HHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEe
Confidence 35789999999999987655544 233332110 023688999999999987643 11 1 23333345889999
Q ss_pred ccCCCCHHHHHHH
Q 008468 467 AVTGQGIQDLETA 479 (564)
Q Consensus 467 Aktg~GI~eL~~~ 479 (564)
|++|.|+++|++.
T Consensus 158 a~~~~g~~~L~~~ 170 (307)
T 1t9h_A 158 SKDQDSLADIIPH 170 (307)
T ss_dssp HHHHTTCTTTGGG
T ss_pred cCCCCCHHHHHhh
Confidence 9999988876654
No 239
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.85 E-value=0.0042 Score=63.19 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhc
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
.+-.|+|+|++|+||||++..|.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 345689999999999999998875
No 240
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.72 E-value=0.0035 Score=63.39 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhc
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
.+-.|+++|++|+||||++..|.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
No 241
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.71 E-value=0.0005 Score=71.54 Aligned_cols=26 Identities=42% Similarity=0.484 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCCc
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSER 343 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~~ 343 (564)
+-.++|+|++|||||||+|.|++...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 34699999999999999999999765
No 242
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.64 E-value=0.0021 Score=65.21 Aligned_cols=56 Identities=27% Similarity=0.321 Sum_probs=35.1
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcceeccccC-------eeEEEEEEEEEECCeeeEEEeCCCCCC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAG-------TTRDVIEASVTVCGVPVTLLDTAGIRE 378 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~g-------tT~d~~~~~~~~~g~~i~LiDTpG~~~ 378 (564)
-.++++|++|||||||+|.|. ........+.. +|+... .....+ --.++||||+..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~--~~~~~~-~g~v~d~pg~~~ 228 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR--LIPFGK-GSFVGDTPGFSK 228 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE--EEEETT-TEEEESSCCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE--EEEcCC-CcEEEECcCcCc
Confidence 468999999999999999999 65433333322 333221 122222 236789999864
No 243
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.62 E-value=0.00041 Score=66.16 Aligned_cols=57 Identities=21% Similarity=0.266 Sum_probs=40.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCc-ceeccccCeeEEEEEEEEEECCeeeEEEeCCC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSER-AIVTEIAGTTRDVIEASVTVCGVPVTLLDTAG 375 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~-~~vs~~~gtT~d~~~~~~~~~g~~i~LiDTpG 375 (564)
.+--|+|+|++|||||||+++|++... .+....+.||+...... .+|..+.++|...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~ 75 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEE 75 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHH
Confidence 445689999999999999999998653 34556667777654432 5677777776544
No 244
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.44 E-value=0.0042 Score=64.53 Aligned_cols=82 Identities=20% Similarity=0.205 Sum_probs=51.8
Q ss_pred hhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCCCCCCcch----h-hhhcccCCcEEEEecc
Q 008468 394 VALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDCAPSASNE----W-NKVGNSFNDHVFTCAV 468 (564)
Q Consensus 394 ~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL~~~~~~~----~-~~l~~~~~~~i~iSAk 468 (564)
.+.++|.+++|... .+..... .+..++... ...++|.++|+||+||.+..... + ..+.....+++.+||+
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~--~i~r~L~~a--~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~ 201 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLN--IIDRYLVGC--ETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSH 201 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHH--HHHHHHHHH--HHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHH--HHHHHHHHH--HhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecC
Confidence 46889999987654 4433222 233322100 01257889999999998754311 1 2333444579999999
Q ss_pred CCCCHHHHHHHH
Q 008468 469 TGQGIQDLETAI 480 (564)
Q Consensus 469 tg~GI~eL~~~L 480 (564)
+|.|+++|...+
T Consensus 202 ~~~gl~~L~~~~ 213 (358)
T 2rcn_A 202 TQDGLKPLEEAL 213 (358)
T ss_dssp TTBTHHHHHHHH
T ss_pred CCcCHHHHHHhc
Confidence 999999987654
No 245
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.41 E-value=0.0015 Score=66.10 Aligned_cols=26 Identities=38% Similarity=0.411 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCCcc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSERA 344 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~~~ 344 (564)
-.++++|++|||||||+|.|.+....
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccc
Confidence 46899999999999999999987644
No 246
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.24 E-value=0.0034 Score=66.74 Aligned_cols=147 Identities=17% Similarity=0.210 Sum_probs=73.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC------Ccceec-cc--cC-----------eeEEEEEEE------------E-E-
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS------ERAIVT-EI--AG-----------TTRDVIEAS------------V-T- 362 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~------~~~~vs-~~--~g-----------tT~d~~~~~------------~-~- 362 (564)
.+-.|+++|++|+||||++..|.+. ....+. +. +. ...+++... + .
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 3456889999999999999988742 111100 00 00 001111100 0 0
Q ss_pred -ECCeeeEEEeCCCCCCchh-HHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEe
Q 008468 363 -VCGVPVTLLDTAGIRETDD-IVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVIN 440 (564)
Q Consensus 363 -~~g~~i~LiDTpG~~~~~~-~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~N 440 (564)
.+++.+.|+||||...... ..... . .....-.+|.+++|+|+..+ .+.......+... -...-+|+|
T Consensus 177 ~~~~~DvVIIDTaG~l~~d~~l~~el--~-~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~~------l~i~GVIlT 245 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQIDEPLMGEL--A-RLKEVLGPDEVLLVLDAMTG--QEALSVARAFDEK------VGVTGLVLT 245 (425)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHH--H-HHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHHH------TCCCEEEEE
T ss_pred HHCCCCEEEEcCCCcccccHHHHHHH--H-HhhhccCCceEEEEEeccch--HHHHHHHHHHHhc------CCceEEEEe
Confidence 1456789999999764322 22211 0 11123368999999998753 2222333322221 012567899
Q ss_pred cCCCCCCCcchhhhhcccCCcEEEEeccCCCCHHHH
Q 008468 441 KIDCAPSASNEWNKVGNSFNDHVFTCAVTGQGIQDL 476 (564)
Q Consensus 441 K~DL~~~~~~~~~~l~~~~~~~i~iSAktg~GI~eL 476 (564)
|.|.................++..++ +|+.++++
T Consensus 246 KlD~~~~~g~alsi~~~~g~PI~flg--~Ge~~~dl 279 (425)
T 2ffh_A 246 KLDGDARGGAALSARHVTGKPIYFAG--VSEKPEGL 279 (425)
T ss_dssp SGGGCSSCHHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred CcCCcccHHHHHHHHHHHCCCEEEEe--CCCChhhc
Confidence 99965332211111112234665655 34445554
No 247
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.02 E-value=0.073 Score=54.37 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.+-.+.|.|++|+|||+|++.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999999864
No 248
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.02 E-value=0.0024 Score=59.29 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
+-.++|+|++|||||||++.|.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468999999999999999998753
No 249
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.66 E-value=0.0061 Score=61.58 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=20.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhc
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
.+-.++++|++|+||||++..|.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445688999999999999998875
No 250
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.64 E-value=0.005 Score=57.43 Aligned_cols=24 Identities=33% Similarity=0.616 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.+++|+|++|+|||||++.|++..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998864
No 251
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.56 E-value=0.0079 Score=57.03 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.4
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
...+..|+|+|++|+|||||++.|.+.-
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567889999999999999999998753
No 252
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.52 E-value=0.0013 Score=70.96 Aligned_cols=99 Identities=11% Similarity=0.116 Sum_probs=53.4
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCcceeccccCeeEEEEE-E--EEEE-CC-eeeEEEeCCCCCCchhHHHHh---h
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIE-A--SVTV-CG-VPVTLLDTAGIRETDDIVEKI---G 387 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~~~gtT~d~~~-~--~~~~-~g-~~i~LiDTpG~~~~~~~ie~~---~ 387 (564)
..+.+|+++|.+|+||||+.++|..... ..+...+... . .... ++ ....+||+.|...+ ...+.. .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~-----~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~-r~re~~~~~~ 110 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN-----FIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGL-KIRKQCALAA 110 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHH-HHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh-----ccCCCceEEecchhhhhhccCCCcccccCCCCHHHH-HHHHHHHHHH
Confidence 3457899999999999999999986431 1111111100 0 0000 11 23456788775211 111111 1
Q ss_pred hhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHH
Q 008468 388 VERSEAVALGADVIIMTVSAVDGWTSEDSELLNR 421 (564)
Q Consensus 388 i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~ 421 (564)
......++..+++.++|+|.++. +....+.|..
T Consensus 111 l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~ 143 (469)
T 1bif_A 111 LNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFN 143 (469)
T ss_dssp HHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHH
Confidence 22234556667888999999886 4444444443
No 253
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.48 E-value=0.071 Score=51.61 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.+-.|.|.|+||+|||+|..++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999764
No 254
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.43 E-value=0.0056 Score=57.81 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
+-.++|+|++|||||||++.|.+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999999874
No 255
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.33 E-value=0.0067 Score=57.14 Aligned_cols=50 Identities=26% Similarity=0.302 Sum_probs=32.5
Q ss_pred EEEEcCCCCChhHHHHHhhcCCc-ceeccccCeeEEEEEEEEEECCeeeEEEe
Q 008468 321 IAIVGRPNVGKSSLLNAWSKSER-AIVTEIAGTTRDVIEASVTVCGVPVTLLD 372 (564)
Q Consensus 321 I~IvG~~nvGKSSLlN~L~~~~~-~~vs~~~gtT~d~~~~~~~~~g~~i~LiD 372 (564)
|+|+||+|||||||+++|+.... .+....+.|||..-.. +.+|....+++
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~g--E~~G~dY~Fvs 54 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAG--EVNGKDYNFVS 54 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTT--CCBTTTBEECC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCC--CcCCceeEeec
Confidence 78999999999999999987532 2334556667643221 23455555543
No 256
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.21 E-value=0.01 Score=56.27 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.+--|+|+|++|||||||++.|.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45569999999999999999999865
No 257
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.20 E-value=0.024 Score=60.46 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=18.3
Q ss_pred cEEEEEcCCCCChhHHHHHhh
Q 008468 319 LQIAIVGRPNVGKSSLLNAWS 339 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~ 339 (564)
.-|+|+|.+++|||+|+|.|+
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchhHHHHHHH
Confidence 457899999999999999665
No 258
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.17 E-value=0.0094 Score=55.15 Aligned_cols=26 Identities=27% Similarity=0.458 Sum_probs=22.9
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..+-.|+|+|++|||||||++.|.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999999886
No 259
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.08 E-value=0.08 Score=52.13 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.3
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..+-.+.|.|+||+|||+|++++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34457999999999999999999765
No 260
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.07 E-value=0.011 Score=55.40 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.|--++|+|++|||||||++.|.+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35569999999999999999998853
No 261
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.92 E-value=0.012 Score=55.61 Aligned_cols=28 Identities=21% Similarity=0.359 Sum_probs=22.9
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
...|=-++|+|++|||||||++.|.+-.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3455569999999999999999999864
No 262
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.83 E-value=0.012 Score=56.54 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=22.7
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|-.++|+|++|||||||++.|.+..
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345569999999999999999999853
No 263
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.82 E-value=0.011 Score=54.91 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.2
Q ss_pred EEEEcCCCCChhHHHHHhhcCC
Q 008468 321 IAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 321 I~IvG~~nvGKSSLlN~L~~~~ 342 (564)
++|+|++|||||||++.|.+..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 7899999999999999999754
No 264
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.78 E-value=0.013 Score=55.19 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.+..|+|+|++|||||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999885
No 265
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.69 E-value=0.015 Score=54.28 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..+..|+|+|++||||||+++.|.+.-
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 345679999999999999999998764
No 266
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.66 E-value=0.013 Score=55.33 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=22.8
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..+.-|+|+|++|||||||.+.|....
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345679999999999999999998653
No 267
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.60 E-value=0.016 Score=55.84 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=23.2
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
...|--++|+|++|||||||++.|.+..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 3455679999999999999999999865
No 268
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.60 E-value=0.027 Score=51.78 Aligned_cols=25 Identities=40% Similarity=0.562 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.+-.++|+|++|+|||||++.+.+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999875
No 269
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.46 E-value=0.016 Score=52.55 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
+..|+|+|++||||||+.+.|.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999875
No 270
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.28 E-value=0.021 Score=52.38 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=20.9
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhc
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
..|--++++|++|||||||++.+.+
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHcc
Confidence 3455689999999999999998664
No 271
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.26 E-value=0.022 Score=55.43 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|||||||++.|.|-.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345569999999999999999999865
No 272
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.26 E-value=0.022 Score=53.51 Aligned_cols=25 Identities=12% Similarity=0.347 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.+-.|+|+|++|||||||++.|.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999764
No 273
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.24 E-value=0.054 Score=49.36 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=23.5
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..+-.++|+|+.|+|||||++.|.+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 455679999999999999999998854
No 274
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.17 E-value=0.023 Score=54.89 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=23.1
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|||||||++.|.|-.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345568999999999999999999864
No 275
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.13 E-value=0.18 Score=44.55 Aligned_cols=26 Identities=12% Similarity=0.236 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.+..|.|.|++|+|||++..++....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 34679999999999999999997653
No 276
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.08 E-value=0.021 Score=54.85 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=17.7
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhh-cCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWS-KSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~-~~~ 342 (564)
..|--++|+|++|||||||++.|. +..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 456679999999999999999999 753
No 277
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.06 E-value=0.026 Score=55.03 Aligned_cols=27 Identities=41% Similarity=0.532 Sum_probs=23.4
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|+|||||++.|+|-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345579999999999999999999864
No 278
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.05 E-value=0.027 Score=54.72 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWS 339 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~ 339 (564)
++..|+|+|++|||||||++.|.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999999
No 279
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.02 E-value=0.045 Score=53.20 Aligned_cols=22 Identities=36% Similarity=0.598 Sum_probs=20.3
Q ss_pred EEEEcCCCCChhHHHHHhhcCC
Q 008468 321 IAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 321 I~IvG~~nvGKSSLlN~L~~~~ 342 (564)
++|+|++|+|||||++++.+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998753
No 280
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.01 E-value=0.023 Score=55.57 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHhhcCC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.++|+|+.|+|||||++.|.|-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 281
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.96 E-value=0.38 Score=48.93 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=22.5
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..+-.+.|.|+||+|||++++.++..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999864
No 282
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.94 E-value=0.026 Score=57.32 Aligned_cols=27 Identities=33% Similarity=0.444 Sum_probs=23.5
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
...|=.++|+|++|+|||||++.|.+-
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 456668999999999999999999864
No 283
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.92 E-value=0.027 Score=55.01 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=23.5
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|+|||||++.|.|-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345579999999999999999999864
No 284
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.91 E-value=0.028 Score=54.41 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=23.4
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|+|||||++.|.|-.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345579999999999999999999864
No 285
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.90 E-value=0.028 Score=55.10 Aligned_cols=27 Identities=37% Similarity=0.475 Sum_probs=23.4
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|+|||||++.|.|-.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345579999999999999999999864
No 286
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.89 E-value=0.026 Score=53.98 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
+=.++|+|+.|+|||||++.|.+-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 446899999999999999999986
No 287
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.89 E-value=0.028 Score=53.43 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
+..|+|+|++||||||+.+.|.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999764
No 288
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.87 E-value=0.029 Score=55.35 Aligned_cols=27 Identities=30% Similarity=0.355 Sum_probs=23.4
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|+|||||++.|.|-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345569999999999999999999865
No 289
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.87 E-value=0.024 Score=52.39 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHhhc
Q 008468 320 QIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~ 340 (564)
.++|+|++|||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 479999999999999999986
No 290
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.84 E-value=0.19 Score=50.32 Aligned_cols=68 Identities=13% Similarity=0.123 Sum_probs=38.8
Q ss_pred CeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHH-HHHHHHHhccccCCCCCCEE-EEEecC
Q 008468 365 GVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDS-ELLNRIQSNKKSTESSTPMI-LVINKI 442 (564)
Q Consensus 365 g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~-~~l~~l~~~~~~~~~~~PvI-vV~NK~ 442 (564)
++.++|+|||+....... ...+..+|.+|+|++.+.. +.... ..++.+... . ...+.+++ +|+||.
T Consensus 156 ~yD~ViiD~p~~~~~~~~---------~~~l~~aD~viiv~~~~~~-s~~~~~~~~~~l~~~-~-~~~~~~~~gvV~N~~ 223 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGGF---------AAPLQHADQAVVVTANDFD-SIYAMNRIIAAVQAK-S-KNYKVRLAGCVANRS 223 (307)
T ss_dssp SCSEEEEEECCSSCCGGG---------GGGGGTCSEEEEEECSSHH-HHHHHHHHHHHHHTT-T-TTCCCEEEEEEEESC
T ss_pred cCCEEEEeCCCccchHHH---------HHHHHHCCEEEEEecCcHH-HHHHHHHHHHHHHHh-h-hcCCCceEEEEEecC
Confidence 466899999876442211 2346789999999976431 12222 223333322 1 12345554 899999
Q ss_pred CC
Q 008468 443 DC 444 (564)
Q Consensus 443 DL 444 (564)
+-
T Consensus 224 ~~ 225 (307)
T 3end_A 224 RA 225 (307)
T ss_dssp SC
T ss_pred Cc
Confidence 83
No 291
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.82 E-value=0.03 Score=51.06 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.+..|+|+|++||||||+.+.|.+.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3457999999999999999998764
No 292
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.81 E-value=0.029 Score=55.99 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=23.4
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|||||||++.|.|-.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 345569999999999999999999864
No 293
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.78 E-value=0.029 Score=54.55 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=23.0
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..+..|+|+|+.|||||||++.|.+.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999874
No 294
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.78 E-value=0.03 Score=55.38 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=23.2
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|||||||++.|.|-.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345568999999999999999999864
No 295
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.76 E-value=0.027 Score=54.06 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.|=.++|+|+.|+|||||++.|.|-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44468999999999999999999864
No 296
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.75 E-value=0.031 Score=55.53 Aligned_cols=27 Identities=37% Similarity=0.474 Sum_probs=23.4
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|||||||++.|.|-.
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345569999999999999999999865
No 297
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.75 E-value=0.031 Score=55.23 Aligned_cols=27 Identities=30% Similarity=0.382 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|+|||||++.|.|-.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 345579999999999999999999864
No 298
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.70 E-value=0.033 Score=54.36 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=23.4
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|+|||||++.|.|-.
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345569999999999999999999864
No 299
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.69 E-value=0.032 Score=55.18 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=22.5
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..+=.++|+|++|+|||||++.|.+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 44556999999999999999999874
No 300
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.69 E-value=0.032 Score=52.33 Aligned_cols=26 Identities=35% Similarity=0.403 Sum_probs=22.8
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..+..|+|+|++|+||||+.+.|.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45677999999999999999999875
No 301
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.66 E-value=0.03 Score=56.93 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=23.9
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
...+..|+|+|++|||||||++.|.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 356778999999999999999999874
No 302
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.63 E-value=0.034 Score=54.71 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=23.4
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|+|||||++.|.|-.
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345568999999999999999999865
No 303
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.59 E-value=0.034 Score=55.12 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|+|||||++.|.|-.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 345568999999999999999999864
No 304
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.56 E-value=0.035 Score=55.24 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=23.4
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|+|||||++.|.|-.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345569999999999999999999864
No 305
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.55 E-value=0.035 Score=55.56 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=23.5
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|+|||||++.|.|-.
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345579999999999999999999865
No 306
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.55 E-value=0.059 Score=53.24 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHhhcCC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.|+|+|++|+|||||++++.+..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 38999999999999999998753
No 307
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.53 E-value=0.036 Score=54.75 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|+|||||++.|.|-.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345569999999999999999999864
No 308
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.53 E-value=0.036 Score=54.39 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.7
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..|=.++|+|+.|+|||||++.|.|-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34556899999999999999999985
No 309
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.50 E-value=0.037 Score=52.00 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=23.7
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
...+..|+|+|++|+||||+.+.|.+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 345678999999999999999999885
No 310
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.50 E-value=0.036 Score=54.99 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=22.9
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..|=.++|+|+.|+|||||++.|+|-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34556999999999999999999996
No 311
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.49 E-value=0.086 Score=53.80 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=22.3
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..++-|+|+|++|||||||++.|.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999998764
No 312
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.46 E-value=0.063 Score=50.40 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.7
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..+..|+|+|++|+|||||++.|.+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999863
No 313
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.44 E-value=0.084 Score=53.05 Aligned_cols=26 Identities=23% Similarity=0.101 Sum_probs=22.8
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..+..|+|+|++|||||||.+.|.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998764
No 314
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.39 E-value=0.033 Score=52.39 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHhhcCC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
+++|+|++|+|||||++.|.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999998753
No 315
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.34 E-value=0.039 Score=54.31 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|+|||||++.|.|-.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345568999999999999999999865
No 316
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.34 E-value=0.039 Score=49.44 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=18.6
Q ss_pred cEEEEEcCCCCChhHHHHHh
Q 008468 319 LQIAIVGRPNVGKSSLLNAW 338 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L 338 (564)
+.|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 45899999999999999999
No 317
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.32 E-value=0.04 Score=54.57 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|+|||||++.|.|-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345569999999999999999999864
No 318
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.30 E-value=0.037 Score=51.77 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChhHHHHHhhc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999987
No 319
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.30 E-value=0.038 Score=49.78 Aligned_cols=22 Identities=27% Similarity=0.187 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHhhcC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.|+|+|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 320
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.23 E-value=0.37 Score=51.26 Aligned_cols=52 Identities=17% Similarity=0.281 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh--hhcCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 291 VMDKIHAMSQDVENALETANYDK--LLQSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 291 l~~~l~~l~~~l~~ll~~~~~~~--~~~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
+.+..+.+++.+.--+....... ..+.+--|.+.|+||+|||+|..++.+.-
T Consensus 186 l~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 186 LTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 34444455544444333322211 12334469999999999999999998753
No 321
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.18 E-value=0.046 Score=49.57 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChhHHHHHhhc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
..|+|+|.|||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999987
No 322
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.17 E-value=0.046 Score=50.14 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
+..|+|.|.+||||||+.+.|...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999763
No 323
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.17 E-value=0.039 Score=50.65 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhc
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
.+..|+|+|.+||||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999975
No 324
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.13 E-value=0.047 Score=54.31 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.4
Q ss_pred EEEEcCCCCChhHHHHHhhcCC
Q 008468 321 IAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 321 I~IvG~~nvGKSSLlN~L~~~~ 342 (564)
++|+|++|+|||||++++.+..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHc
Confidence 9999999999999999998853
No 325
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.13 E-value=0.27 Score=45.41 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHhhcC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.++|.|++|+|||+|+..+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999998764
No 326
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.10 E-value=0.043 Score=54.40 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
|=.++|+|+.|+|||||++.|.|-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5579999999999999999999864
No 327
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.09 E-value=0.031 Score=56.78 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=23.6
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|+|||||++.|.+-.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 455679999999999999999999854
No 328
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.07 E-value=0.039 Score=51.18 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCChhHHHHHhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..++|+|++|+|||||+++|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 45899999999999999999875
No 329
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.07 E-value=0.04 Score=51.53 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
...|+|+|.+||||||+.+.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999764
No 330
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.07 E-value=0.047 Score=51.14 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.+-.|+|+|++||||||+.+.|...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999854
No 331
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.01 E-value=0.05 Score=50.61 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.+..|+|.|.+||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999875
No 332
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.99 E-value=0.07 Score=52.11 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=23.2
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
...+..|+++|+|||||||+.+.|...
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 345678999999999999999998764
No 333
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.99 E-value=0.04 Score=57.14 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.+-.++|+|++|+|||||++.|++.-
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 44579999999999999999999864
No 334
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.95 E-value=0.023 Score=52.59 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHhhcCC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.|+|+|++|+|||||++.|.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998753
No 335
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.95 E-value=0.045 Score=51.81 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=22.8
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
...+=-++|+|++|+|||||++.|++.
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 344556999999999999999999874
No 336
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.94 E-value=0.051 Score=50.04 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhc
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
.+..|+|+|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999975
No 337
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.94 E-value=0.049 Score=51.40 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChhHHHHHhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
++|+|+|++||||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999653
No 338
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.85 E-value=0.05 Score=50.96 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChhHHHHHhhc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
+.|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999987
No 339
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.84 E-value=0.13 Score=51.33 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=22.3
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..+.-|+|+|++||||||+.+.|...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34577999999999999999999753
No 340
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.79 E-value=0.05 Score=50.46 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHhhcC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.|+|+|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999764
No 341
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.77 E-value=0.053 Score=51.20 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChhHHHHHhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
++|+|+|++||||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999653
No 342
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.74 E-value=0.057 Score=52.81 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.7
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWS 339 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~ 339 (564)
..+..|+|+|++||||||+++.|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999998
No 343
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.74 E-value=0.06 Score=48.95 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
+..|+|+|.+||||||+.+.|...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999999864
No 344
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.73 E-value=0.05 Score=54.98 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=23.1
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..+..|+|+|++|||||||++.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999874
No 345
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.70 E-value=0.057 Score=48.53 Aligned_cols=26 Identities=38% Similarity=0.608 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.+-.++|+|++|+|||||++.+.+.-
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999998753
No 346
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.69 E-value=0.06 Score=51.14 Aligned_cols=25 Identities=16% Similarity=0.473 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.++.|+|+|.+||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999753
No 347
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.69 E-value=0.055 Score=54.45 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=23.5
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|+|||||++.|.|-.
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 355579999999999999999999865
No 348
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.68 E-value=0.59 Score=47.29 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChhHHHHHhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
-.|.|.|+||+|||+|..++...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46999999999999999999875
No 349
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.63 E-value=0.06 Score=50.20 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
+..|+|.|.+||||||+.+.|...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 567999999999999999999764
No 350
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.61 E-value=0.059 Score=51.70 Aligned_cols=24 Identities=17% Similarity=0.432 Sum_probs=21.0
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWS 339 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~ 339 (564)
..+=-++|+|++|||||||++.++
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 445569999999999999999988
No 351
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.60 E-value=0.045 Score=56.05 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
-.++|+|++|+|||||++.|++.-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999999864
No 352
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.57 E-value=0.52 Score=49.89 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.+--|.+.|+||+|||+|..++.+.-
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHHh
Confidence 34469999999999999999998763
No 353
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.56 E-value=0.042 Score=56.82 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
+-+++|+|++|+|||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999864
No 354
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.55 E-value=0.048 Score=56.53 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHhhcC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.|+|+|++|+|||||++.+++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999874
No 355
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.55 E-value=0.066 Score=49.47 Aligned_cols=25 Identities=32% Similarity=0.611 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.+..|+|+|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999765
No 356
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.48 E-value=0.053 Score=58.98 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.+-.++|+|++|||||||+|+|++.-
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34569999999999999999998753
No 357
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.47 E-value=0.11 Score=46.77 Aligned_cols=24 Identities=21% Similarity=0.536 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
+-.++|.|++|+|||+|++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998764
No 358
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.46 E-value=0.058 Score=49.71 Aligned_cols=26 Identities=19% Similarity=0.469 Sum_probs=22.7
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..+..|+|+|.+|+||||+.+.|...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998764
No 359
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.42 E-value=0.068 Score=50.01 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=22.6
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..+..|+|.|.+||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999753
No 360
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.40 E-value=0.068 Score=50.07 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.6
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..+..|+|.|.+||||||+.+.|...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999753
No 361
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.37 E-value=0.084 Score=51.32 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.9
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..+++|+|+|++||||||+.+.|...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999753
No 362
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.32 E-value=0.067 Score=49.62 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.9
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.+...|+|+|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999999875
No 363
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.27 E-value=0.075 Score=49.62 Aligned_cols=26 Identities=19% Similarity=0.417 Sum_probs=22.5
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..++.|+|+|.+||||||+.+.|...
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45578999999999999999999753
No 364
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.26 E-value=0.065 Score=51.51 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..+.-|+|.|+.|||||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45678999999999999999999875
No 365
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.24 E-value=0.071 Score=48.92 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
+..|+|+|.+||||||+.+.|...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998753
No 366
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.22 E-value=0.98 Score=47.81 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
--|.+.|+||+|||+|..++.+.-
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 349999999999999999998753
No 367
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.22 E-value=0.071 Score=48.80 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.+..|+|+|.+|+||||+.+.|.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999764
No 368
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.18 E-value=0.075 Score=48.97 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=22.3
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.++..|+|+|.+||||||+.+.|...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999753
No 369
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.15 E-value=0.068 Score=48.96 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHhhcC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.|+|.|.+||||||+.+.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 370
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.03 E-value=0.075 Score=50.75 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.+..|+|+|.+||||||+.+.|...
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999753
No 371
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.02 E-value=0.57 Score=49.23 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
+--|.+.|+||+|||+|..++.+.-
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhh
Confidence 3459999999999999999998753
No 372
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.01 E-value=0.14 Score=49.72 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
+-.|+|+|++|+|||+|++++.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999999864
No 373
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.99 E-value=0.074 Score=55.18 Aligned_cols=27 Identities=30% Similarity=0.494 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCc
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSER 343 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~ 343 (564)
.|=-++|+|+.|||||||++.|.|-..
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 444689999999999999999999653
No 374
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.95 E-value=0.084 Score=48.38 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
+..|+++|++||||||+.+.|...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999753
No 375
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.89 E-value=0.079 Score=54.89 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=23.2
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|||||||++.|.|-.
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344568999999999999999999865
No 376
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=91.87 E-value=0.24 Score=51.24 Aligned_cols=22 Identities=45% Similarity=0.629 Sum_probs=18.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHhh
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWS 339 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~ 339 (564)
.++ .+|+|+.|+|||||+++++
T Consensus 23 ~g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SGI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SEE-EEEECCTTSSHHHHHHHHH
T ss_pred CCe-EEEECCCCCCHHHHHHHHH
Confidence 344 5699999999999999987
No 377
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.87 E-value=0.079 Score=55.06 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=23.2
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|||||||++.|.+-.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 344568999999999999999999865
No 378
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.84 E-value=0.075 Score=55.33 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.+-.|+|+|++|+|||||++.|++.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3456999999999999999999874
No 379
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.84 E-value=0.081 Score=54.89 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.|=.++|+|+.|||||||++.|.|-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 44568999999999999999999865
No 380
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.80 E-value=0.15 Score=51.51 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.5
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..+-.++++|+.||||||+++.|.+.
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 45667999999999999999999863
No 381
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.74 E-value=0.082 Score=49.97 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChhHHHHHhhc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 382
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.72 E-value=0.12 Score=48.87 Aligned_cols=27 Identities=33% Similarity=0.386 Sum_probs=23.1
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
...+..|+|+|.+|+||||+.+.|.+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999998764
No 383
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.67 E-value=0.086 Score=54.76 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.|=.++|+|+.|||||||++.|.|-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 44468999999999999999999865
No 384
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.60 E-value=0.081 Score=50.27 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.+..|+|+|++||||||+.+.|...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999754
No 385
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.60 E-value=0.088 Score=55.04 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCc
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSER 343 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~ 343 (564)
.|=.++|+|+.|||||||++.|.|-..
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 444689999999999999999999653
No 386
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.55 E-value=0.56 Score=50.08 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=22.7
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
+.+--|.+.|+||+|||+|..++.+.-
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 344569999999999999999998753
No 387
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.53 E-value=0.09 Score=54.79 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=23.2
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|||||||++.|.|-.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 344568999999999999999999865
No 388
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.52 E-value=0.073 Score=56.36 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHhhcC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.|+|+|++|+|||||++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999874
No 389
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.48 E-value=0.083 Score=48.80 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.+..|+|+|.+||||||+.+.|...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999764
No 390
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.48 E-value=0.092 Score=54.72 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCc
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSER 343 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~ 343 (564)
.+=.++|+|+.|||||||++.|.|-..
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 444689999999999999999998653
No 391
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.45 E-value=0.6 Score=50.50 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChhHHHHHhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
--++|.|++|+|||+++.++...
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999865
No 392
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.45 E-value=0.097 Score=47.04 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChhHHHHHhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
++|+|.|.+||||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999763
No 393
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.44 E-value=0.093 Score=47.96 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.+..|+|+|.+|+||||+.+.|...
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 3456999999999999999999743
No 394
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.34 E-value=0.1 Score=49.50 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
++.|+|+|.+||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999753
No 395
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.28 E-value=0.1 Score=49.41 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhc
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
+++.|+|.|.+||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999975
No 396
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.27 E-value=0.6 Score=48.39 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
+..|+|.|++|+|||+|..++...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999765
No 397
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.16 E-value=0.1 Score=49.14 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=21.8
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..+--++|+|++|+|||||++.+++.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34556899999999999999999853
No 398
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.15 E-value=0.096 Score=47.75 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=17.1
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
+..|+|.|.+||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999753
No 399
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.07 E-value=0.1 Score=54.67 Aligned_cols=27 Identities=33% Similarity=0.620 Sum_probs=23.1
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|||||||++.|.|-.
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 345569999999999999999999854
No 400
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.03 E-value=0.24 Score=49.15 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.+..|+|.|+||+|||++..++...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999877653
No 401
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.00 E-value=0.091 Score=47.85 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHhhcC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~ 341 (564)
+|+|+|++||||||+.+.|...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5999999999999999999754
No 402
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.97 E-value=0.091 Score=56.35 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=23.7
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|-.++|+|+.|||||||++.|+|-.
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 356679999999999999999999864
No 403
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.92 E-value=0.14 Score=53.15 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.4
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..+-.|+|+|+.|||||||++.|.+.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 35567999999999999999999863
No 404
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.91 E-value=0.12 Score=49.30 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChhHHHHHhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
++|+|+|+|||||+|....|...
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
No 405
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.90 E-value=0.12 Score=48.02 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
....|+|.|.+||||||+.+.|...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999754
No 406
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.88 E-value=0.099 Score=47.82 Aligned_cols=21 Identities=38% Similarity=0.316 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhHHHHHhhc
Q 008468 320 QIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~ 340 (564)
-.+|+|+.|+|||||+.+|..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999865
No 407
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.88 E-value=0.078 Score=54.75 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.|=.++|+|+.|||||||++.|.|-.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 44468999999999999999999865
No 408
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.84 E-value=0.16 Score=45.75 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.-.|+|.|++|+|||+|+..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998764
No 409
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.79 E-value=0.12 Score=47.33 Aligned_cols=21 Identities=24% Similarity=0.253 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHhhc
Q 008468 320 QIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~ 340 (564)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 410
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.75 E-value=0.12 Score=47.51 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHhhcC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~ 341 (564)
-|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 411
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.65 E-value=0.051 Score=50.99 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHhhcC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~ 341 (564)
-|+|.|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 412
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=90.62 E-value=0.22 Score=46.96 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
+-.++|.|++|+|||+|+..+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998764
No 413
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=90.60 E-value=0.1 Score=53.13 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHhhcCC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.++|+|++|+|||||++.+.+.-
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 48999999999999999998753
No 414
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.55 E-value=0.1 Score=53.01 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHhhcCC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
-++|+|+.|||||||+|.|++..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999999999999999753
No 415
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.54 E-value=0.13 Score=49.67 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.9
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..+.-|+|.|++||||||+++.|...
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999865
No 416
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=90.54 E-value=0.14 Score=46.84 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
+..|+|+|.+||||||+.+.|...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999753
No 417
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.44 E-value=0.13 Score=49.07 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCChhHHHHHhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
+.|+|.|.+||||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999753
No 418
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.44 E-value=0.14 Score=47.32 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChhHHHHHhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..++|+|.+|+|||||+++|+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 419
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.37 E-value=0.075 Score=54.98 Aligned_cols=26 Identities=19% Similarity=0.463 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.|=.++|+|+.|||||||++.|.|-.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44568999999999999999999865
No 420
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.35 E-value=0.25 Score=50.43 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHhhcC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.++|.|++|+|||||++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999864
No 421
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.33 E-value=0.12 Score=47.22 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChhHHHHHhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..|+|+|.+||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999998753
No 422
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.32 E-value=0.14 Score=50.15 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
+..|+|+|.|||||||+.+.|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999998753
No 423
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.29 E-value=0.14 Score=47.88 Aligned_cols=25 Identities=20% Similarity=0.225 Sum_probs=21.9
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhc
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
..+--++|+|++|+|||||+..+++
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3455699999999999999999987
No 424
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.21 E-value=0.15 Score=48.82 Aligned_cols=26 Identities=23% Similarity=0.509 Sum_probs=22.5
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..+..|+|+|.+||||||+.+.|...
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999754
No 425
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.21 E-value=0.14 Score=51.02 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=22.0
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..|=-++|+|++|+|||||++.+++.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 44456899999999999999998874
No 426
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.21 E-value=0.13 Score=53.06 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=23.9
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=+++|+|+.|+|||||++.|++..
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455689999999999999999999875
No 427
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.13 E-value=0.21 Score=50.73 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
+-.++|.|++|+|||||++.+.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999874
No 428
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.04 E-value=1.1 Score=54.08 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
|=+++|+|++|+|||||++.|++..
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred CcEEEEEecCCCcHHHHHHHhcccc
Confidence 3479999999999999999999864
No 429
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.04 E-value=0.13 Score=50.48 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
+-.|+|+|++|+||||+.+.|.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999763
No 430
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=90.02 E-value=0.13 Score=50.39 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHhhcC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.|+|+|++|||||||.+.|...
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 4789999999999999999754
No 431
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.98 E-value=0.16 Score=49.38 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=21.6
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..++.|+|.|++|+||||+.+.|...
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999753
No 432
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=89.97 E-value=0.14 Score=56.56 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
|=.++|+|+.|+|||||++.|.|-.
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4468999999999999999999864
No 433
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.96 E-value=0.14 Score=56.42 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChhHHHHHhhcCC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
=.++|+|+.|+|||||++.|.|-.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 369999999999999999999864
No 434
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=89.90 E-value=0.31 Score=48.19 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
+-.|+|.|+||+|||+|++++.+.-
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998753
No 435
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.78 E-value=0.16 Score=48.39 Aligned_cols=27 Identities=15% Similarity=0.358 Sum_probs=22.9
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
...+--++|+|++|+|||||+..+++.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 344556999999999999999999884
No 436
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.75 E-value=0.16 Score=56.26 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
|=.++|+|++|+|||||++.|.+-.
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3479999999999999999999864
No 437
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.67 E-value=0.16 Score=55.46 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=23.5
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|+|||||++.|.|..
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455679999999999999999999854
No 438
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.58 E-value=0.16 Score=45.71 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHhhcC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.|+|+|.+||||||+.+.|...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 439
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=89.58 E-value=0.16 Score=56.00 Aligned_cols=26 Identities=35% Similarity=0.609 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.|=.++|+|+.|+|||||++.|.|-.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999999864
No 440
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.57 E-value=0.24 Score=47.06 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=23.6
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCCc
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSER 343 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~~ 343 (564)
..+..|+|+|++|+|||+|...|...-.
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3456799999999999999999987643
No 441
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=89.47 E-value=2.7 Score=40.75 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
...+.|.|+||+|||+|..++...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999999999864
No 442
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.33 E-value=0.19 Score=48.28 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=22.3
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhc
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
..+..|+|+|.+|+||||+.+.|.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999876
No 443
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=89.33 E-value=1.6 Score=46.17 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
+-.|+|.|+||+|||+|..++...
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999999875
No 444
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=89.17 E-value=0.14 Score=56.44 Aligned_cols=26 Identities=35% Similarity=0.449 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.|=.++|+|+.|+|||||++.|.+-.
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34579999999999999999999864
No 445
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.16 E-value=0.18 Score=53.69 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=23.8
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=+++|+|++|+|||||++.|.+..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 455679999999999999999999865
No 446
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=89.15 E-value=0.47 Score=47.41 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=22.6
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..+-.|+|.|+||+|||+|.+++.+.-
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 344569999999999999999998753
No 447
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=89.13 E-value=0.19 Score=52.09 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.9
Q ss_pred cCCcEEEEEcCCCCChhHHHHHh
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAW 338 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L 338 (564)
+...||+|+|.+++|||||+..+
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 55699999999999999999886
No 448
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=89.13 E-value=0.16 Score=54.82 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChhHHHHHhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
=.++|+|+.|+|||||++.|.+-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 35899999999999999999873
No 449
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=89.07 E-value=0.21 Score=48.60 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..+.|+|.|.+||||||+.+.|...
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4478999999999999999998763
No 450
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.06 E-value=0.19 Score=52.41 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=22.9
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
...+-.++|+|++|+|||||++.|.+.
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 345567999999999999999999863
No 451
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.88 E-value=0.17 Score=55.87 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
|=.++|+|++|+|||||++.|.+-.
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3479999999999999999999864
No 452
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.81 E-value=0.19 Score=45.11 Aligned_cols=19 Identities=47% Similarity=0.573 Sum_probs=17.4
Q ss_pred EEEEcCCCCChhHHHHHhh
Q 008468 321 IAIVGRPNVGKSSLLNAWS 339 (564)
Q Consensus 321 I~IvG~~nvGKSSLlN~L~ 339 (564)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999999975
No 453
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=88.68 E-value=0.47 Score=43.93 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChhHHHHHhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
-.|.|.|++|+|||+|+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999998864
No 454
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=88.65 E-value=0.35 Score=42.65 Aligned_cols=24 Identities=8% Similarity=0.140 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
...|.|.|++|+|||++..++...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 356999999999999999998765
No 455
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=88.60 E-value=0.34 Score=48.33 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=21.3
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
+.+.-+.+.|+||+|||+|..++...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 33456778899999999999999864
No 456
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=88.48 E-value=1 Score=41.39 Aligned_cols=69 Identities=13% Similarity=0.128 Sum_probs=44.3
Q ss_pred CeeeEEEeCCCCCCchhHHHHhhhhhhhhhhhcCcEEEEEecCCCCCChhHHHHHHHHHhccccCCCCCCEEEEEecCCC
Q 008468 365 GVPVTLLDTAGIRETDDIVEKIGVERSEAVALGADVIIMTVSAVDGWTSEDSELLNRIQSNKKSTESSTPMILVINKIDC 444 (564)
Q Consensus 365 g~~i~LiDTpG~~~~~~~ie~~~i~~~~~~l~~aD~vl~ViD~s~~~s~~~~~~l~~l~~~~~~~~~~~PvIvV~NK~DL 444 (564)
.+.+.|+|||+.... . ....+..+|.+++++..+... ..-...++.+.... ....+.++.+|+||+|.
T Consensus 75 ~yD~viiD~~~~~~~--~--------~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~-~~~~~~~~~vv~N~~~~ 142 (206)
T 4dzz_A 75 DYDFAIVDGAGSLSV--I--------TSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQ-AYSRKVEARFLITRKIE 142 (206)
T ss_dssp TSSEEEEECCSSSSH--H--------HHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTS-CGGGCCEEEEEECSBCT
T ss_pred CCCEEEEECCCCCCH--H--------HHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHH-HhCCCCcEEEEEeccCC
Confidence 467899999986522 1 123467799999999887654 33334444443321 11335677999999985
Q ss_pred C
Q 008468 445 A 445 (564)
Q Consensus 445 ~ 445 (564)
.
T Consensus 143 ~ 143 (206)
T 4dzz_A 143 M 143 (206)
T ss_dssp T
T ss_pred C
Confidence 3
No 457
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=88.48 E-value=0.91 Score=46.54 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.+-.|+|.|++|+|||+|..++...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999999764
No 458
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.46 E-value=0.22 Score=54.43 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.|=.++|+|+.|+|||||++.|.|..
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34468999999999999999999854
No 459
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.43 E-value=0.22 Score=55.21 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.|=.++|+|+.|+|||||++.|.|..
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 45579999999999999999999854
No 460
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=88.37 E-value=0.23 Score=49.40 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhc
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
..+.|+|+|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999973
No 461
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=88.27 E-value=0.25 Score=44.51 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHhhcC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.|+|.|.+||||||+.+.|...
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998753
No 462
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.27 E-value=0.23 Score=55.08 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=23.2
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
..|=.++|+|+.|+|||||++.|.|..
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 345579999999999999999999854
No 463
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=88.10 E-value=1.3 Score=44.39 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
....|.|.|++|+|||++..++...
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHHHHHHh
Confidence 3467999999999999999998763
No 464
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.02 E-value=0.48 Score=48.38 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChhHHHHHhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
-.|.|.|++|+|||+|++.+...
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
No 465
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=87.72 E-value=0.39 Score=52.45 Aligned_cols=25 Identities=40% Similarity=0.650 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.+-.++++|+||+|||||++++.+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999864
No 466
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=87.69 E-value=0.24 Score=46.28 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHhhcC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~ 341 (564)
-++|.|++|+|||+|+..+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 467
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=87.56 E-value=0.22 Score=60.24 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
|=+|+|||++|+|||||++.|.+-
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTS
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 447999999999999999999874
No 468
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A*
Probab=87.54 E-value=1.1 Score=46.40 Aligned_cols=52 Identities=8% Similarity=0.126 Sum_probs=41.5
Q ss_pred EEEEEeecccHHHHHHHhcCCCcccccCCCCCCCCCCCcceeeeeeeecCCCCeeeeEEEEEc
Q 008468 109 VGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAVPM 171 (564)
Q Consensus 109 iaiiRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f 171 (564)
.++|+|+||+|...++.++...- ....+.+..|+.+.+++|.++|+.++.++
T Consensus 56 ~g~i~v~G~da~~fLq~l~t~dv-----------~~l~~g~~~y~~~ln~~G~i~~D~~v~r~ 107 (375)
T 1wsr_A 56 MLQTKILGSDRVKLMESLVVGDI-----------AELRPNQGTLSLFTNEAGGILDDLIVTNT 107 (375)
T ss_dssp SEEEEEESTTHHHHHHHHBSSCC-----------TTCCTTEEEEEEEECTTCCEEEEEEEEEC
T ss_pred eEEEEEECCCHHHHHHHhccccc-----------CcCCCCCEEEEEEECCCCeEEEEEEEEEE
Confidence 57999999999999999985321 11245678899999999999999988764
No 469
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=87.45 E-value=0.27 Score=53.67 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.|=.++|+|+.|+|||||++.|+|..
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578999999999999999999965
No 470
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=87.45 E-value=0.27 Score=53.68 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.|=.++|+|+.|+|||||++.|+|-.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45568999999999999999999865
No 471
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=87.34 E-value=0.23 Score=48.46 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.4
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
..+..|+|.|.+||||||+.+.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999999865
No 472
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=87.26 E-value=4.2 Score=40.44 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=17.3
Q ss_pred EEEEcCCCCChhHHHHHhhcC
Q 008468 321 IAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 321 I~IvG~~nvGKSSLlN~L~~~ 341 (564)
+.+.|++|+|||+++.++...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455577999999999999764
No 473
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=87.10 E-value=0.2 Score=54.84 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=24.5
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.+.+..|+|+|.+|||||||++.|.+.-
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhh
Confidence 4567889999999999999999998753
No 474
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.09 E-value=0.31 Score=48.29 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChhHHHHHhhc
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
..|+|+|.|||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999986
No 475
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.06 E-value=0.29 Score=48.22 Aligned_cols=25 Identities=28% Similarity=0.217 Sum_probs=21.5
Q ss_pred cCCcEEEEEcCCCCChhHHHHHhhc
Q 008468 316 QSGLQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 316 ~~~ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
..+--++|+|++|+|||||+..+++
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3445699999999999999999886
No 476
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=87.03 E-value=0.31 Score=45.68 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.+.|+|+|.+||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 478999999999999999999764
No 477
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=86.91 E-value=0.66 Score=50.15 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHhhcCC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
-|+|+|+||+|||+|++++.+..
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999998753
No 478
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=86.88 E-value=0.36 Score=46.31 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=20.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
++--|.|+|+|||||+|....|...
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3334678899999999999998764
No 479
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=86.77 E-value=0.31 Score=45.12 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHhhcC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.|+|.|.+|+||||+.+.|...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6999999999999999999763
No 480
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.76 E-value=0.44 Score=50.55 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.+-.|.+.||||+|||+|..++.+.-
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 34569999999999999999998753
No 481
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae}
Probab=86.70 E-value=1.2 Score=46.49 Aligned_cols=54 Identities=13% Similarity=0.316 Sum_probs=42.5
Q ss_pred cEEEEEEeecccHHHHHHHhcCCCcccccCCCCCCCCCCCcceeeeeeeecCCCCeeeeEEEEEc
Q 008468 107 GAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAVPM 171 (564)
Q Consensus 107 ~aiaiiRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f 171 (564)
|..+.|+|+||+|...++.++...- . ...+-++.|+.+.+++|.++|+.++...
T Consensus 82 Sh~g~i~V~G~DA~~fL~~l~tndv---~--------~l~~G~~~yt~~ln~~G~i~dD~~V~rl 135 (393)
T 3gir_A 82 SHMKLIAVEGPKAVEFLSYALPVDA---A--------LLKIGQSRYSYLLNERAGILDDLILTRL 135 (393)
T ss_dssp TTSEEEEEESTTHHHHHHHHSSSCT---T--------TSCTTBEEEEEEECTTCCEEEEEEEEEE
T ss_pred CCcEEEEEECCCHHHHhhhhccccc---c--------cCCCCcEEEEEEECCCCcEEEEEEEEEe
Confidence 4478999999999999999985321 1 1135668899999999999999998764
No 482
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A
Probab=86.68 E-value=0.92 Score=46.35 Aligned_cols=75 Identities=5% Similarity=-0.025 Sum_probs=51.6
Q ss_pred cEEEEEEeecccHHHHHHHhcCCCcccccCCCCCCCCCCCcceeeeeeeecCCCCeeeeEEEEEcCCCCCcchhhhHHHh
Q 008468 107 GAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAVPMLAPRSYTREDVVELQ 186 (564)
Q Consensus 107 ~aiaiiRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~P~S~TgEd~vEi~ 186 (564)
+--++|||+||+|...++.++...-. ...+.+..|+.+.+++|.++|+.++... +| ++.
T Consensus 37 S~~~~i~v~G~DA~~fLq~l~tndv~-----------~l~~g~~~yt~~ln~~G~i~~D~~v~r~-------~~---~~~ 95 (338)
T 1vly_A 37 DDWALATITGADSEKYMQGQVTADVS-----------QMAEDQHLLAAHCDAKGKMWSNLRLFRD-------GD---GFA 95 (338)
T ss_dssp TTEEEEEEESTTHHHHHHTTBSSCGG-----------GCCTTCEEEEEEECTTSCEEEEEEEEEE-------TT---EEE
T ss_pred CCcEEEEEECCCHHHHhcchhhhccc-----------ccCCCceEEEEEECCCCCEEEEEEEEEe-------CC---cEE
Confidence 34789999999999999999853211 1134567899999999999999988754 22 343
Q ss_pred hhccHHHHHHHHHHHH
Q 008468 187 CHGSEVCLRRVLRACL 202 (564)
Q Consensus 187 ~HG~~~v~~~il~~l~ 202 (564)
.-.+.......++.|-
T Consensus 96 lv~~a~~~~~~~~~L~ 111 (338)
T 1vly_A 96 WIERRSVREPQLTELK 111 (338)
T ss_dssp EEEEHHHHHHHHHHHH
T ss_pred EEecchhhHHHHHHHH
Confidence 3344455555555543
No 483
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=86.62 E-value=0.32 Score=53.93 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCC
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~ 342 (564)
.|=.++|+|+.|+|||||++.|.|..
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45568999999999999999999964
No 484
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A
Probab=86.52 E-value=1.3 Score=45.61 Aligned_cols=53 Identities=17% Similarity=0.328 Sum_probs=41.8
Q ss_pred EEEEEEeecccHHHHHHHhcCCCcccccCCCCCCCCCCCcceeeeeeeecCCCCeeeeEEEEEc
Q 008468 108 AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAVPM 171 (564)
Q Consensus 108 aiaiiRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f 171 (564)
--++|+|+||+|...++.++...- . ...+.+..|+.+.+++|.++|+.++.++
T Consensus 50 ~~~~i~v~G~da~~fL~~l~t~dv---~--------~l~~g~~~yt~~ln~~G~i~~d~~v~r~ 102 (364)
T 1wos_A 50 HMGEFLVKGPEAVSFIDFLITNDF---S--------SLPDGKAIYSVMCNENGGIIDDLVVYKV 102 (364)
T ss_dssp TSEEEEEESTTHHHHHHHHBSSCC---T--------TCCTTEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CcEEEEEECCCHHHHHHHhccccc---c--------cCCCCCEEEEEEECCCCeEEEEEEEEEE
Confidence 368999999999999999985321 1 1135678899999999999999988764
No 485
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=86.23 E-value=0.72 Score=47.62 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChhHHHHHhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.+|+|+|++|+||||+...|.+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999999887653
No 486
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=86.18 E-value=0.5 Score=50.79 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCChhHHHHHhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
--|+|+|+||+|||+|++++.+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999999874
No 487
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=86.15 E-value=0.43 Score=48.45 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHhhcCCcceecc
Q 008468 317 SGLQIAIVGRPNVGKSSLLNAWSKSERAIVTE 348 (564)
Q Consensus 317 ~~ikI~IvG~~nvGKSSLlN~L~~~~~~~vs~ 348 (564)
.+.-|+|+|++|+||||+.+.|.......+++
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~d 174 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKRGHRLVAD 174 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHTTCEEEES
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhcCCceecC
Confidence 46679999999999999999999865444443
No 488
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=86.09 E-value=0.3 Score=48.88 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=17.7
Q ss_pred CcEEEEEcCCCCChhHHHHHhhc
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSK 340 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~ 340 (564)
++.|+|.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999875
No 489
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis}
Probab=86.01 E-value=1.2 Score=45.91 Aligned_cols=53 Identities=21% Similarity=0.286 Sum_probs=41.7
Q ss_pred EEEEEEeecccHHHHHHHhcCCCcccccCCCCCCCCCCCcceeeeeeeecCCCCeeeeEEEEEc
Q 008468 108 AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAVPM 171 (564)
Q Consensus 108 aiaiiRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f 171 (564)
--++|+|+||+|...++.++...-. ...+.+..|+.+.+.+|.++|+.++.++
T Consensus 54 ~~~~i~v~G~da~~fLq~l~t~dv~-----------~l~~g~~~y~~~ln~~G~i~~d~~v~r~ 106 (365)
T 1yx2_A 54 HMGEVEVSGNDSLSFLQRLMTNDVS-----------ALTPGRAQYTAMCYPDGGTVDDLLIYQK 106 (365)
T ss_dssp TSEEEEEESTTHHHHHHHHBSSCGG-----------GCCTTBEEEEEEECTTSCEEEEEEEEEE
T ss_pred CeEEEEEECCCHHHHHHHhcccccc-----------cCCCCCEEEEEEECCCCeEEEEEEEEEE
Confidence 3689999999999999999853211 1134567899999999999999988764
No 490
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=86.00 E-value=0.32 Score=53.92 Aligned_cols=24 Identities=17% Similarity=0.433 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHhhcCCc
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKSER 343 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~~~ 343 (564)
.++|+|+.|+|||||++.|.|-..
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 379999999999999999998653
No 491
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=85.94 E-value=0.27 Score=46.95 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHHHHhhcC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.+++.|+||+||||+..+|+..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999998888753
No 492
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1
Probab=85.80 E-value=1.5 Score=45.94 Aligned_cols=53 Identities=25% Similarity=0.347 Sum_probs=42.0
Q ss_pred EEEEEEeecccHHHHHHHhcCCCcccccCCCCCCCCCCCcceeeeeeeecCCCCeeeeEEEEEc
Q 008468 108 AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAVPM 171 (564)
Q Consensus 108 aiaiiRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f 171 (564)
-.++|+|+||+|...++.++...- ....+.+..|+.+.+.+|.++|+.++.++
T Consensus 54 ~~~~i~v~G~Da~~fLq~l~t~dv-----------~~l~~g~~~yt~~ln~~G~i~~D~~v~r~ 106 (401)
T 1v5v_A 54 HMGEIVFRGKDALKFLQYVTTNDI-----------SKPPAISGTYTLVLNERGAIKDETLVFNM 106 (401)
T ss_dssp TSEEEEEESTTHHHHHHHHSSSCT-----------TSSCSSEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CcEEEEEECCCHHHHHHHhhcccc-----------CcCCCCCEEEEEEECCCCcEEEEEEEEEe
Confidence 368999999999999999985321 11245678899999999999999988764
No 493
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=85.77 E-value=0.069 Score=51.77 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhHHHHHhhcCC
Q 008468 321 IAIVGRPNVGKSSLLNAWSKSE 342 (564)
Q Consensus 321 I~IvG~~nvGKSSLlN~L~~~~ 342 (564)
++|+|+.|+|||||++++.+-.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 4688999999999999998854
No 494
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=85.69 E-value=0.14 Score=53.45 Aligned_cols=24 Identities=33% Similarity=0.507 Sum_probs=20.7
Q ss_pred hcCCcEEEEEcCCCCChhHHHHHhh
Q 008468 315 LQSGLQIAIVGRPNVGKSSLLNAWS 339 (564)
Q Consensus 315 ~~~~ikI~IvG~~nvGKSSLlN~L~ 339 (564)
...+ .++|+|+.|+|||||+++|.
T Consensus 58 ~~~G-~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 58 LGGG-FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp CCSS-EEEEEESHHHHHHHHTHHHH
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHH
Confidence 3466 89999999999999998874
No 495
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=85.64 E-value=0.42 Score=45.94 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChhHHHHHhhcC
Q 008468 318 GLQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 318 ~ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
+..|+|.|..||||||+.+.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999865
No 496
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A*
Probab=85.57 E-value=1.3 Score=46.06 Aligned_cols=53 Identities=19% Similarity=0.294 Sum_probs=41.7
Q ss_pred EEEEEEeecccHHHHHHHhcCCCcccccCCCCCCCCCC-CcceeeeeeeecCCCCeeeeEEEEEc
Q 008468 108 AVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRP-TSHVVEYGVVLDRHGNVVDEVLAVPM 171 (564)
Q Consensus 108 aiaiiRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iD~~l~~~f 171 (564)
-.++|+|+||+|...++.++...-. .. .+.+..|+.+.+.+|.++|+.++.++
T Consensus 63 ~~g~i~v~G~DA~~fLq~l~t~dv~-----------~l~~~g~~~yt~~ln~~G~i~~D~~v~r~ 116 (381)
T 1vlo_A 63 HMTIVDLRGSRTREFLRYLLANDVA-----------KLTKSGKALYSGMLNASGGVIDDLIVYYF 116 (381)
T ss_dssp TSEEEEEESTTHHHHHHHHBSSCGG-----------GCCSTTBEEEEEEECTTSCEEEEEEEEEE
T ss_pred CcEEEEEECCCHHHHHHHhcccccc-----------ccCCCCCEEEEEEECCCCcEEEEEEEEEE
Confidence 3689999999999999999853211 12 34568899999999999999988754
No 497
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum}
Probab=85.55 E-value=0.99 Score=46.49 Aligned_cols=54 Identities=6% Similarity=0.073 Sum_probs=42.4
Q ss_pred cEEEEEEeecccHHHHHHHhcCCCcccccCCCCCCCCCCCcceeeeeeeecCCCCeeeeEEEEEc
Q 008468 107 GAVGIVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAVPM 171 (564)
Q Consensus 107 ~aiaiiRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f 171 (564)
+-.++|+|+||+|...++.++...- . ...+.+..|+.+.+++|.++|+.++...
T Consensus 43 S~~g~i~v~G~DA~~fLq~l~tndv---~--------~l~~g~~~y~~~ln~~G~i~~D~~v~r~ 96 (355)
T 3ttg_A 43 VSRPSIFVEGEDRKNFLQGIASQDI---L--------KQDEKSLSYSFFLNPKARILFDAWCGNF 96 (355)
T ss_dssp SCCCCEEEESTTHHHHHHTTBSSCC---S--------SCCTTBEEEEEEECTTCCEEEEEEEEEE
T ss_pred CCcEEEEEECCCHHHHHhhhhhhcc---c--------cCCCCCEEEEEEECCCceEEEEEEEEEE
Confidence 4467999999999999999985321 1 1135668899999999999999998764
No 498
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=85.52 E-value=0.34 Score=48.68 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChhHHHHHhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
-.+.|.|++|+|||+|++++.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999999864
No 499
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=85.48 E-value=0.76 Score=46.71 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChhHHHHHhhcC
Q 008468 319 LQIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 319 ikI~IvG~~nvGKSSLlN~L~~~ 341 (564)
-.++|.|+||+|||+|..++...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998754
No 500
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=85.39 E-value=0.71 Score=45.68 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHhhcC
Q 008468 320 QIAIVGRPNVGKSSLLNAWSKS 341 (564)
Q Consensus 320 kI~IvG~~nvGKSSLlN~L~~~ 341 (564)
.++|+|++|+|||++...+.+.
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 6999999999999999998864
Done!