BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008469
(564 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IEZ|A Chain A, Solution Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Riboflavin Biosynthesis
Length = 217
Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 90/204 (44%), Positives = 129/204 (63%), Gaps = 2/204 (0%)
Query: 137 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKG 196
F + A+ +R+G+ +I A+ T E MA ++HG+GIVC+ +
Sbjct: 13 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITE 72
Query: 197 EDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGD 256
+ ++LDLP+MV + N T FTVT++A G TTGVSA DR TTV + +KP D
Sbjct: 73 DRRKQLDLPMMV--ENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSD 130
Query: 257 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLRE 316
NRPGH+FPL+ + GGVL R GHTEA++DL LAGF PA VLCE+ +DDG+MAR P+ E
Sbjct: 131 LNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIE 190
Query: 317 FAKRENLKIISIADLIRYRRKRDK 340
FA + N+ +++I DL+ YR+ ++
Sbjct: 191 FANKHNMALVTIEDLVAYRQAHER 214
>pdb|1G57|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase
pdb|1G57|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase
pdb|1G58|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Gold Derivative
pdb|1G58|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Gold Derivative
Length = 217
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 90/204 (44%), Positives = 129/204 (63%), Gaps = 2/204 (0%)
Query: 137 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKG 196
F + A+ +R+G+ +I A+ T E MA ++HG+GIVC+ +
Sbjct: 13 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITE 72
Query: 197 EDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGD 256
+ ++LDLP+MV + N T FTVT++A G TTGVSA DR TTV + +KP D
Sbjct: 73 DRRKQLDLPMMV--ENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSD 130
Query: 257 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLRE 316
NRPGH+FPL+ + GGVL R GHTEA++DL LAGF PA VLCE+ +DDG+MAR P+ E
Sbjct: 131 LNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIE 190
Query: 317 FAKRENLKIISIADLIRYRRKRDK 340
FA + N+ +++I DL+ YR+ ++
Sbjct: 191 FANKHNMALVTIEDLVAYRQAHER 214
>pdb|3H07|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase From Yersinia Pestis Co92
pdb|3H07|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase From Yersinia Pestis Co92
Length = 220
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/201 (45%), Positives = 129/201 (64%), Gaps = 2/201 (0%)
Query: 140 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDL 199
+ AI+ +R G+ ++ AA+ T E MA ++HG+GIVC+ + E
Sbjct: 19 VERAIDALRNGRGVMVLDDESRENEGDMVFAAEAMTLEQMALTIRHGSGIVCLCITDERR 78
Query: 200 ERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNR 259
++LDLP+MV N + TAFTVT++A G TTGVSA DR TT+ + ++KP D NR
Sbjct: 79 QQLDLPMMVTH--NSSQFQTAFTVTIEAAEGVTTGVSAADRLTTIRKAIADNAKPADLNR 136
Query: 260 PGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAK 319
PGH+FPL+ + GGVL R GHTEAS+DLA LAG+ PA VLCE+ +DDGSMA P++ FAK
Sbjct: 137 PGHVFPLRGQPGGVLSRRGHTEASIDLATLAGYKPAGVLCELTNDDGSMAHAPEVIAFAK 196
Query: 320 RENLKIISIADLIRYRRKRDK 340
++ +++I DL Y + R K
Sbjct: 197 LHDMPVVTIDDLAAYLQSRAK 217
>pdb|2BZ0|A Chain A, Crystal Structure Of E. Coli Gtp Cyclohydrolase Ii In
Complex With Gtp Analogue, Gmpcpp, And Zinc
pdb|2BZ0|B Chain B, Crystal Structure Of E. Coli Gtp Cyclohydrolase Ii In
Complex With Gtp Analogue, Gmpcpp, And Zinc
Length = 196
Score = 185 bits (469), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 93/192 (48%), Positives = 121/192 (63%), Gaps = 1/192 (0%)
Query: 342 VDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGS 401
+ R + A++PT WG F + + G +H+A+V GDI +L RVHSECLTGD S
Sbjct: 3 LKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFS 62
Query: 402 ARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEEL 461
RCDCG QL A+ QI GRG+L+Y R EGR IGL +K+RAY LQD G DTVEAN +L
Sbjct: 63 LRCDCGFQLEAALTQIAEEGRGILLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQL 121
Query: 462 GLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKR 521
G D R++ + A M + LGV ++L+TNNP K L G+ + RVPLI N+
Sbjct: 122 GFAADERDFTLCADMFKLLGVNEVRLLTNNPKKVEILTEAGINIVERVPLIVGRNPNNEH 181
Query: 522 YLETKRAKMGHI 533
YL+TK KMGH+
Sbjct: 182 YLDTKAEKMGHL 193
>pdb|3LQU|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Complexed With Ribulose-5 Phosphate
pdb|3LQU|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Complexed With Ribulose-5 Phosphate
pdb|3LRJ|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LRJ|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LRJ|C Chain C, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LRJ|D Chain D, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LS6|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate And Zinc
pdb|3LS6|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate And Zinc
Length = 217
Score = 184 bits (466), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 89/204 (43%), Positives = 128/204 (62%), Gaps = 2/204 (0%)
Query: 137 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKG 196
F + A++ +R+G+ +I A+ T E MA ++HG+GIVC+ +
Sbjct: 13 FERVELALDALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITE 72
Query: 197 EDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGD 256
+ ++LDLP+MV + N T FTVT++A G TTGVSA DR TTV +KP D
Sbjct: 73 DRRKQLDLPMMV--ENNTSAYGTGFTVTIEAAEGVTTGVSAADRVTTVRAAIKDGAKPSD 130
Query: 257 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLRE 316
NRPGH+FPL+ + GGVL R GHTEA++DL LAGF PA VLCE+ +DDG+MAR P+
Sbjct: 131 LNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIA 190
Query: 317 FAKRENLKIISIADLIRYRRKRDK 340
FA + N+ +++I DL+ YR+ ++
Sbjct: 191 FAGQHNMAVVTIEDLVAYRQAHER 214
>pdb|2BZ1|A Chain A, Crystal Structure Of Apo E. Coli Gtp Cyclohydrolase Ii
Length = 196
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 91/192 (47%), Positives = 119/192 (61%), Gaps = 1/192 (0%)
Query: 342 VDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGS 401
+ R + A++PT WG F + + G +H+A+V GDI +L RVHSECLTGD S
Sbjct: 3 LKRVAEAKLPTPWGDFLXVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFS 62
Query: 402 ARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEEL 461
RCDCG QL A+ QI GRG+L+Y R EGR IGL +K+RAY LQD G DTVEAN +L
Sbjct: 63 LRCDCGFQLEAALTQIAEEGRGILLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQL 121
Query: 462 GLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKR 521
G D R++ + A + LGV ++L+TNNP K L G+ + RVPLI N+
Sbjct: 122 GFAADERDFTLCADXFKLLGVNEVRLLTNNPKKVEILTEAGINIVERVPLIVGRNPNNEH 181
Query: 522 YLETKRAKMGHI 533
YL+TK K GH+
Sbjct: 182 YLDTKAEKXGHL 193
>pdb|3MGZ|A Chain A, Crystal Structure Of Dhbps Domain Of Bi-Functional
DhbpsGTP Cyclohydrolase Ii From Mycobacterium
Tuberculosis At Ph 4.0
pdb|3MIO|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Domain From Mycobacterium Tuberculosis At Ph
6.00
pdb|3MIO|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Domain From Mycobacterium Tuberculosis At Ph
6.00
Length = 206
Score = 175 bits (444), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 97/205 (47%), Positives = 129/205 (62%), Gaps = 4/205 (1%)
Query: 137 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKG 196
S+ A+ DI GK LI AA+ ATPE +AF+V++ +G +CV + G
Sbjct: 4 LDSVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDG 63
Query: 197 EDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGD 256
+RL L M A N +K TA+TVTVDA++G TG+SA DRATT+ LA S D
Sbjct: 64 AICDRLGLLPMYAV--NQDKHGTAYTVTVDARNGIGTGISASDRATTMRLLADPTSVADD 121
Query: 257 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKL 314
F RPGH+ PL+ ++GGVL+R GHTEA+VDLA +AG PA +CE+V D+GSMA +L
Sbjct: 122 FTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDEL 181
Query: 315 REFAKRENLKIISIADLIRYRRKRD 339
R FA L +I+IADLI +RRK +
Sbjct: 182 RVFADEHGLALITIADLIEWRRKHE 206
>pdb|3MK5|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Domain From Mycobacterium Tuberculosis With
Sulfate And Zinc At Ph 4.00
Length = 212
Score = 175 bits (444), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 97/205 (47%), Positives = 129/205 (62%), Gaps = 4/205 (1%)
Query: 137 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKG 196
S+ A+ DI GK LI AA+ ATPE +AF+V++ +G +CV + G
Sbjct: 10 LDSVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDG 69
Query: 197 EDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGD 256
+RL L M A N +K TA+TVTVDA++G TG+SA DRATT+ LA S D
Sbjct: 70 AICDRLGLLPMYAV--NQDKHGTAYTVTVDARNGIGTGISASDRATTMRLLADPTSVADD 127
Query: 257 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKL 314
F RPGH+ PL+ ++GGVL+R GHTEA+VDLA +AG PA +CE+V D+GSMA +L
Sbjct: 128 FTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDEL 187
Query: 315 REFAKRENLKIISIADLIRYRRKRD 339
R FA L +I+IADLI +RRK +
Sbjct: 188 RVFADEHGLALITIADLIEWRRKHE 212
>pdb|1TKS|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans
pdb|1TKS|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans
pdb|1TKU|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans In Complex With
Ribulose-5-Phosphate
pdb|1TKU|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans In Complex With
Ribulose-5-Phosphate
pdb|2RIS|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans- Alternate Interpretation
pdb|2RIU|A Chain A, Alternative Models For Two Crystal Structures Of Candida
Albicans 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase-
Alternate Interpreation
Length = 204
Score = 171 bits (434), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 128/205 (62%), Gaps = 3/205 (1%)
Query: 134 TEGFSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVS 193
T F+ I EA+E + G+F LIMAA+L T E MAF+V++ +G VCV
Sbjct: 2 TNIFTPIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVP 61
Query: 194 MKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSK 253
+ E +L+LP M+A + ++ TA+T+T D GTTTG+SA DRA T +LA+ +SK
Sbjct: 62 LSEERANQLELPPMLANR--SDRHGTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSK 119
Query: 254 PGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVV-DDDGSMARLP 312
P DF +PGHI PL+ G + KR GHTEA+V L+ LAG PA V+CE+V D+DG M RL
Sbjct: 120 PQDFIKPGHILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPAGVICELVRDEDGLMMRLD 179
Query: 313 KLREFAKRENLKIISIADLIRYRRK 337
+F K+ +KII+I L+ Y K
Sbjct: 180 DCIQFGKKHGIKIININQLVEYISK 204
>pdb|1K49|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase (Cation Free Form)
pdb|1K4I|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Two Magnesium Ions
pdb|1K4L|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Two Manganese Ions
pdb|1K4O|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With One Manganese, And A Glycerol
pdb|1K4P|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Zinc Ions
Length = 233
Score = 155 bits (393), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 121/217 (55%), Gaps = 14/217 (6%)
Query: 133 PTEGFSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCV 192
P F +IP+ I+ + G+F LI+AA+ T E MAF+V+H +G++C
Sbjct: 8 PKSNFDAIPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICA 67
Query: 193 SMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKH-GTTTGVSARDRATTVLTLASRD 251
+ E LDLP MV N + TA+TV+VDA+H TTTG+SA DRA LA+ D
Sbjct: 68 PLTPERTTALDLPQMVTH--NADPRGTAYTVSVDAEHPSTTTGISAHDRALACRMLAAPD 125
Query: 252 SKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGS---- 307
++P F RPGH+FPL+ GGV R GHTEA V+L LAG P AV+ E+VDD
Sbjct: 126 AQPSHFRRPGHVFPLRAVAGGVRARRGHTEAGVELCRLAGKRPVAVISEIVDDGQEVEGR 185
Query: 308 -------MARLPKLREFAKRENLKIISIADLIRYRRK 337
M R + FA+R LK+ +I D+I + K
Sbjct: 186 AVRAAPGMLRGDECVAFARRWGLKVCTIEDMIAHVEK 222
>pdb|1PVW|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
pdb|1PVW|B Chain B, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
pdb|1PVW|C Chain C, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
Length = 227
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 114/221 (51%), Gaps = 27/221 (12%)
Query: 138 SSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGE 197
+++ +AIE +++G+ +++A+Q TPE + + K G++C ++ +
Sbjct: 2 NNVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPD 61
Query: 198 DLERLDLPLMV------AQKEN------------DEKLCTAFTVTVDAKHGTTTGVSARD 239
+L +P MV +QK DEK ++F++T++ + T TG++ D
Sbjct: 62 ICNKLGIPFMVDILEFASQKFKVLRELYPNDIPYDEK--SSFSITINHRK-TFTGITDND 118
Query: 240 RATTVLTLAS--RDSKPGDFNR----PGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFD 293
RA T+ LA ++ + DF + PGH+ L+ EG V R GHTE +V LA LA
Sbjct: 119 RAFTIKKLAELVKEGRFNDFGKEFRSPGHVTLLRAAEGLVKNRQGHTEMTVALAELANLV 178
Query: 294 PAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRY 334
P +CE++ DDG+ + + +A++ NL +S ++I Y
Sbjct: 179 PITTICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINY 219
>pdb|1PVY|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii In Complex With Ribulose 5-Phosphate
pdb|1PVY|B Chain B, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii In Complex With Ribulose 5-Phosphate
pdb|1SNN|A Chain A, 3,4-dihydroxy-2-butanone 4-phosphate Synthase From
Methanococcus Jannaschii
pdb|1SNN|B Chain B, 3,4-dihydroxy-2-butanone 4-phosphate Synthase From
Methanococcus Jannaschii
Length = 227
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 113/221 (51%), Gaps = 27/221 (12%)
Query: 138 SSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGE 197
+++ +AIE +++G+ +++A+Q TPE + + K G++C ++ +
Sbjct: 2 NNVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPD 61
Query: 198 DLERLDLPLMV------AQKEN------------DEKLCTAFTVTVDAKHGTTTGVSARD 239
+L +P MV +QK DEK ++F++T++ + T TG++ D
Sbjct: 62 ICNKLGIPFMVDILEFASQKFKVLRELYPNDIPYDEK--SSFSITINHRK-TFTGITDND 118
Query: 240 RATTVLTLAS--RDSKPGDFNR----PGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFD 293
RA T+ LA ++ + DF + PG + L+ EG V R GHTE +V LA LA
Sbjct: 119 RAFTIKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAEGLVKNRQGHTEMTVALAELANLV 178
Query: 294 PAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRY 334
P +CE++ DDG+ + + +A++ NL +S ++I Y
Sbjct: 179 PITTICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINY 219
>pdb|2RAF|A Chain A, Crystal Structure Of Putative Dinucleotide-Binding
Oxidoreductase (Np_786167.1) From Lactobacillus
Plantarum At 1.60 A Resolution
pdb|2RAF|B Chain B, Crystal Structure Of Putative Dinucleotide-Binding
Oxidoreductase (Np_786167.1) From Lactobacillus
Plantarum At 1.60 A Resolution
pdb|2RAF|C Chain C, Crystal Structure Of Putative Dinucleotide-Binding
Oxidoreductase (Np_786167.1) From Lactobacillus
Plantarum At 1.60 A Resolution
Length = 209
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 210 QKENDEKLCTAFTVTVDA--KHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLK 267
Q+ D ++ AF T A + G G TTVL + DS F R PL+
Sbjct: 115 QQLPDSQVLKAFNTTFAATLQSGQVNG----KEPTTVLVAGNDDSAKQRFTRALADSPLE 170
Query: 268 YREGGVLKRAGHTEA 282
++ G LKRA EA
Sbjct: 171 VKDAGKLKRARELEA 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,064,007
Number of Sequences: 62578
Number of extensions: 612323
Number of successful extensions: 1421
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1389
Number of HSP's gapped (non-prelim): 16
length of query: 564
length of database: 14,973,337
effective HSP length: 104
effective length of query: 460
effective length of database: 8,465,225
effective search space: 3894003500
effective search space used: 3894003500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)