Query 008469
Match_columns 564
No_of_seqs 238 out of 1460
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 12:33:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008469.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008469hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02831 Bifunctional GTP cycl 100.0 2E-139 4E-144 1116.6 43.4 442 103-544 1-443 (450)
2 PRK09319 bifunctional 3,4-dihy 100.0 1E-133 2E-138 1086.1 40.8 409 137-548 5-418 (555)
3 PRK09311 bifunctional 3,4-dihy 100.0 5E-132 1E-136 1050.0 40.5 399 136-536 3-401 (402)
4 PRK09318 bifunctional 3,4-dihy 100.0 9E-131 2E-135 1033.5 35.8 383 140-537 1-383 (387)
5 PRK12485 bifunctional 3,4-dihy 100.0 6E-121 1E-125 954.8 37.8 366 136-512 2-368 (369)
6 PRK14019 bifunctional 3,4-dihy 100.0 5E-118 1E-122 933.7 37.6 364 136-512 2-365 (367)
7 PRK09314 bifunctional 3,4-dihy 100.0 5E-115 1E-119 899.3 34.9 337 136-511 2-339 (339)
8 PRK08815 GTP cyclohydrolase; P 100.0 2E-108 4E-113 862.6 34.4 351 136-537 16-368 (375)
9 COG0108 RibB 3,4-dihydroxy-2-b 100.0 9.1E-77 2E-81 572.6 22.0 201 136-339 2-202 (203)
10 PRK00910 ribB 3,4-dihydroxy-2- 100.0 5E-74 1.1E-78 562.9 22.4 202 136-339 13-214 (218)
11 PRK01792 ribB 3,4-dihydroxy-2- 100.0 3.1E-73 6.7E-78 556.0 22.8 201 136-338 12-212 (214)
12 PRK00014 ribB 3,4-dihydroxy-2- 100.0 1.7E-71 3.6E-76 547.6 22.8 201 138-340 19-219 (230)
13 TIGR00506 ribB 3,4-dihydroxy-2 100.0 3.2E-71 7E-76 537.8 21.5 197 137-335 2-199 (199)
14 PF00926 DHBP_synthase: 3,4-di 100.0 3.8E-71 8.2E-76 535.8 16.7 194 140-335 1-194 (194)
15 KOG1284 Bifunctional GTP cyclo 100.0 1.5E-71 3.3E-76 566.9 14.0 335 94-428 19-357 (357)
16 COG0807 RibA GTP cyclohydrolas 100.0 3.1E-68 6.8E-73 513.8 17.4 192 341-534 2-193 (193)
17 PRK03353 ribB 3,4-dihydroxy-2- 100.0 2.9E-67 6.4E-72 516.6 22.1 202 136-339 12-213 (217)
18 PRK05773 3,4-dihydroxy-2-butan 100.0 2.7E-66 5.8E-71 509.3 21.0 193 139-335 2-217 (219)
19 PRK00393 ribA GTP cyclohydrola 100.0 3.3E-59 7.2E-64 453.5 17.3 196 341-537 2-197 (197)
20 TIGR00505 ribA GTP cyclohydrol 100.0 2.7E-58 5.8E-63 445.1 16.7 191 343-534 1-191 (191)
21 PF00925 GTP_cyclohydro2: GTP 100.0 5.4E-58 1.2E-62 435.1 10.5 169 342-511 1-169 (169)
22 cd00641 GTP_cyclohydro2 GTP cy 100.0 4.4E-55 9.6E-60 422.9 16.9 193 341-534 1-193 (193)
23 PRK07198 hypothetical protein; 100.0 4.3E-41 9.4E-46 351.0 12.8 168 358-528 211-394 (418)
24 KOG1284 Bifunctional GTP cyclo 99.7 3.4E-18 7.3E-23 176.3 1.7 190 348-539 68-326 (357)
25 KOG3009 Predicted carbohydrate 75.2 10 0.00022 42.7 7.9 159 141-329 30-204 (614)
26 TIGR02361 dak_ATP dihydroxyace 73.0 9.5 0.00021 43.9 7.3 88 360-483 33-125 (574)
27 PRK14481 dihydroxyacetone kina 72.1 14 0.00031 39.8 7.9 88 360-484 35-127 (331)
28 PRK11468 dihydroxyacetone kina 68.0 19 0.00041 39.2 7.8 88 361-484 35-127 (356)
29 TIGR02363 dhaK1 dihydroxyaceto 65.4 19 0.00041 38.8 7.1 89 360-484 35-128 (329)
30 PRK14479 dihydroxyacetone kina 62.0 20 0.00044 41.2 7.1 87 360-483 34-125 (568)
31 TIGR02362 dhaK1b probable dihy 59.1 26 0.00057 37.7 6.9 88 360-484 32-124 (326)
32 PRK14483 DhaKLM operon coactiv 56.0 34 0.00074 37.0 7.1 87 360-483 34-125 (329)
33 PTZ00375 dihydroxyacetone kina 52.5 36 0.00078 39.4 7.0 87 360-483 37-128 (584)
34 PF02733 Dak1: Dak1 domain; I 51.5 11 0.00024 40.5 2.6 86 361-483 20-110 (325)
35 PF06794 UPF0270: Uncharacteri 46.2 25 0.00055 29.9 3.4 22 139-160 38-59 (70)
36 COG1560 HtrB Lauroyl/myristoyl 46.0 70 0.0015 34.2 7.5 92 138-249 182-276 (308)
37 PRK04966 hypothetical protein; 43.5 20 0.00044 30.6 2.5 22 139-160 38-59 (72)
38 PF13344 Hydrolase_6: Haloacid 42.8 6.2 0.00013 34.7 -0.7 50 474-526 23-77 (101)
39 KOG2426 Dihydroxyacetone kinas 39.0 1.5E+02 0.0033 33.9 8.9 99 353-488 30-133 (582)
40 PRK00304 hypothetical protein; 34.7 43 0.00093 28.9 3.1 31 139-172 37-67 (75)
41 PF03437 BtpA: BtpA family; I 32.9 88 0.0019 32.6 5.7 120 140-307 28-153 (254)
42 PRK05878 pyruvate phosphate di 32.7 1.8E+02 0.0038 33.5 8.5 114 167-293 382-510 (530)
43 PF13420 Acetyltransf_4: Acety 32.3 27 0.00059 31.3 1.7 36 475-510 103-141 (155)
44 PRK08296 hypothetical protein; 31.9 52 0.0011 38.3 4.2 81 149-231 511-598 (603)
45 PF13263 PHP_C: PHP-associated 30.6 42 0.00091 26.5 2.3 20 312-331 5-24 (56)
46 PF00391 PEP-utilizers: PEP-ut 30.0 40 0.00087 28.4 2.2 67 163-229 8-79 (80)
47 COG0223 Fmt Methionyl-tRNA for 28.3 1E+02 0.0023 33.0 5.4 136 282-420 13-175 (307)
48 COG0825 AccA Acetyl-CoA carbox 28.1 2.2E+02 0.0048 30.7 7.6 95 149-307 105-201 (317)
49 COG1926 Predicted phosphoribos 27.7 1.4E+02 0.0031 30.7 5.9 58 140-197 106-185 (220)
50 cd03109 DTBS Dethiobiotin synt 27.4 1.4E+02 0.003 27.3 5.5 51 277-328 82-132 (134)
51 PLN02398 hydroxyacylglutathion 27.0 8.3E+02 0.018 26.4 12.1 140 274-433 102-246 (329)
52 PLN02880 tyrosine decarboxylas 26.7 1.2E+02 0.0025 34.2 5.7 51 275-325 221-272 (490)
53 COG3473 Maleate cis-trans isom 26.5 54 0.0012 33.7 2.7 61 471-531 107-178 (238)
54 PF00332 Glyco_hydro_17: Glyco 24.1 46 0.00099 35.3 1.9 39 472-510 17-55 (310)
55 PF09363 XFP_C: XFP C-terminal 23.6 29 0.00063 35.1 0.3 49 132-180 2-52 (203)
56 PRK06354 pyruvate kinase; Prov 23.4 1.6E+02 0.0036 34.2 6.2 82 149-231 494-581 (590)
57 TIGR02990 ectoine_eutA ectoine 22.9 54 0.0012 33.6 2.0 41 473-513 111-156 (239)
58 PF04472 DUF552: Protein of un 22.9 63 0.0014 26.9 2.1 23 136-159 8-30 (73)
59 PLN02590 probable tyrosine dec 21.2 1.8E+02 0.0039 33.5 5.9 49 276-324 270-319 (539)
60 COG1901 Uncharacterized conser 21.2 3.8E+02 0.0082 27.2 7.4 67 115-193 101-175 (197)
61 COG3089 Uncharacterized protei 20.6 1E+02 0.0022 26.3 2.8 21 139-159 38-58 (72)
62 PRK07505 hypothetical protein; 20.6 1.1E+02 0.0024 32.7 3.9 34 293-326 180-213 (402)
63 PRK12330 oxaloacetate decarbox 20.2 72 0.0016 36.4 2.5 152 315-483 103-258 (499)
64 TIGR01822 2am3keto_CoA 2-amino 20.0 1.9E+02 0.0042 30.3 5.6 34 293-326 170-204 (393)
No 1
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=100.00 E-value=1.8e-139 Score=1116.59 Aligned_cols=442 Identities=81% Similarity=1.275 Sum_probs=431.5
Q ss_pred ccccccccccCCCcccCCccCCCCCCCCCCCCCCCCCHHHHHHHHHcCCEEEEEeCCCCCCcccEEEEcCCCCHHHHHHH
Q 008469 103 DAIAFGALAADTAPTTFGFSSDDDEFDLDSPTEGFSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFI 182 (564)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~p~~~~~~Ve~AI~aLr~G~~VvV~DdedREnEgdLV~AAe~~T~e~iaFm 182 (564)
++.+|||++++++|++++|+.+..+.+++.+++.|++|++||++||+|+||||+||+|||||||||+|||.+||+.||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~ai~~lr~G~~Viv~Dd~~rEnegdLv~aAe~~t~e~v~fm 80 (450)
T PLN02831 1 DSASFGTLAAEITPTTDDFFVSDAEGDPDRPTEGFSSIAEALEDIRQGKFVVVVDDEDRENEGDLIMAASLVTPEAMAFL 80 (450)
T ss_pred CCccccccccCCcccccccccccccccccCcccccCcHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEchhCCHHHHHHH
Confidence 57899999999999999999999999999997789999999999999999999999999999999999999999999999
Q ss_pred HHhCCceEEEecChhhhhhcCCccccccccCcccCCCceeEeeecCCCCCcCCChhhHHHHHHHHHcCCCCCCCCCCCCc
Q 008469 183 VKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGH 262 (564)
Q Consensus 183 ~r~~~Glicvam~~e~~~rL~Lp~M~~~~~n~~~~~taFtVsVDa~~g~tTGISA~DRA~TIraLAd~~s~p~Df~rPGH 262 (564)
++|++|+||+||++++|++|+||+|+....|.+..+++||||||+++|++|||||.|||+|||+||+|.++|+||++|||
T Consensus 81 ~~~~~GliC~~lt~~ra~~L~Lp~m~~~~~n~~~~~t~ftvsVd~~~g~~TGISa~dRa~Tir~lad~~~~~~df~~PGH 160 (450)
T PLN02831 81 VKHGSGIVCVSMKGEDLDRLRLPLMVPSKENEEKMATAFTVTVDAKHGTTTGVSASDRAKTILALASPDSKPEDFRRPGH 160 (450)
T ss_pred HHhCCCceEEecCHHHHhhcCCCcccccccCCcccCCCceEEEecCCCcccccchHHHHHHHHHHhCcCCChhhcCCCCc
Confidence 99999999999999999999999999854577778899999999999999999999999999999999999999999999
Q ss_pred cceeeeccCCcccccchhHHHHHHHHHcCCCceEEEEEEeCC-CCCcCChhHHHHHHHhcCCceEeehhHHHHHhhcccc
Q 008469 263 IFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDD-DGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKL 341 (564)
Q Consensus 263 VfPL~a~~gGvl~R~GhTEAAVdLarlAGl~PaaVicEiv~~-dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e~l 341 (564)
||||++++|||++|+|||||||||||||||.||+|||||+++ ||+|||.+++++||++|+||+++|+|||+||+++|++
T Consensus 161 vfPL~a~~ggvl~R~GhtEaavdLarlAgl~Paavi~Ei~~~~dG~m~~~~~~~~fA~~h~L~~v~i~dli~yr~~~e~l 240 (450)
T PLN02831 161 IFPLRYREGGVLKRAGHTEAAVDLAVLAGLPPVGVLCEIVNDEDGSMARLPQLRKFAEEHGLKIISIADLIRYRRKREKL 240 (450)
T ss_pred ccceeecccCccCCCChHHHHHHHHHHcCCCceEEEEEeccCCCCCccChHHHHHHHHHcCCcEEEHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999995 8999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCcEEEEEEEecCCCceEEEEEeccCCCCCceeEEeccCCcccccccCCCCCChHHHHHHHHHHHHhC
Q 008469 342 VDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAG 421 (564)
Q Consensus 342 Ver~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALV~Gdi~~~~~vLVRVHSeCltgDvfgS~rCDCg~QL~~AL~~Ia~~G 421 (564)
|+++++.+|||.||.|++++|++..++.||+|||+|++.+++||||||||+|+|||+|||.+|||+|||+.||++|+++|
T Consensus 241 V~rv~~~~lpT~~G~F~~~~yr~~~~g~eHlALv~Gd~~~~~~vLVRVHSec~tgDvfgs~rCdCg~qL~~Al~~I~~~G 320 (450)
T PLN02831 241 VERTAVARLPTKWGLFTAYCYRSKLDGIEHIAFVKGDIGDGQDVLVRVHSECLTGDIFGSARCDCGNQLALAMQLIEKAG 320 (450)
T ss_pred ccccceeeeecCCCCEEEEEEEeCCCCeEEEEEEeCCcCCCCCceEEEeccCCHHHHhcCCCCCCcchHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCcchhhhhhhhccccCCCCchHhhhhcCCCCCCcChhHHHHHHHHcCCCceecccCCCCcccccccC
Q 008469 422 RGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGY 501 (564)
Q Consensus 422 ~GVlVYLr~qEGRGiGL~~Kl~AY~Lqd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~~IrLLTNNP~K~~aL~g~ 501 (564)
+|||||||+||||||||.+|+++|.||++|+||++||.+||++.|+|+||+|||||++|||++||||||||+|+++|++|
T Consensus 321 ~GVlvYLr~qegrgigl~~Kl~ay~lq~~g~dt~eAn~~lg~~~D~RdygigAqIL~dLGI~~irLLTNNp~K~~~L~~~ 400 (450)
T PLN02831 321 RGVLVYLRGHEGRGIGLGHKLRAYNLQDEGRDTVEANEELGLPVDSREYGIGAQILRDLGVRTMRLMTNNPAKYTGLKGY 400 (450)
T ss_pred CEEEEEEcCCCcccchHHHHHHHHhcccccCcchhhhhhccCcccceehHHHHHHHHHcCCCEEEECCCCHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeeccCCCChhhHHHHHHHHHhcCCCCCCCCCcccce
Q 008469 502 GLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESNGRLTN 544 (564)
Q Consensus 502 GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~l~~~~~~~~~~ 544 (564)
||+|++++|+.++++++|++||+||++||||++..++.+++..
T Consensus 401 GieVve~vp~~~~~~~~n~~Yl~tK~~k~gH~l~~~~~~~~~~ 443 (450)
T PLN02831 401 GLAVVGRVPLLTPITKENKRYLETKRTKMGHVYGSDLGGHVSG 443 (450)
T ss_pred CCEEEEEecccCCCChhhHHHHHHHHHHhCCcCCCCCCCcccc
Confidence 9999999999999999999999999999999999999887764
No 2
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=100.00 E-value=9.6e-134 Score=1086.08 Aligned_cols=409 Identities=56% Similarity=0.939 Sum_probs=395.2
Q ss_pred CCCHHHHHHHHHcCCEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCceEEEecChhhhhhcCCccccccccCccc
Q 008469 137 FSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEK 216 (564)
Q Consensus 137 ~~~Ve~AI~aLr~G~~VvV~DdedREnEgdLV~AAe~~T~e~iaFm~r~~~Glicvam~~e~~~rL~Lp~M~~~~~n~~~ 216 (564)
|++|++||++||+|+||||+||++||||||||+|||++||+.||||++|++|+||+||++++|++|+||+|+.. |++.
T Consensus 5 ~~~Ie~Ai~aLr~G~~VvV~Dde~REnEgDLV~aAE~~T~e~infm~r~a~GliClamt~~ra~~L~Lp~Mv~~--n~~~ 82 (555)
T PRK09319 5 FDSIDDALAAIRNGECVVVVDDENRENEGDLICAAQFATPEMINFMATEARGLICLAMTGERLDELDLPLMVDR--NTDS 82 (555)
T ss_pred cccHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHHHhcCCCeeeccCHHHHhhcCCCccccc--CCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999986 7777
Q ss_pred CCCceeEeeecC--CCCCcCCChhhHHHHHHHHHcCCCCCCCCCCCCccceeeeccCCcccccchhHHHHHHHHHcCCCc
Q 008469 217 LCTAFTVTVDAK--HGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDP 294 (564)
Q Consensus 217 ~~taFtVsVDa~--~g~tTGISA~DRA~TIraLAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarlAGl~P 294 (564)
++++||||||++ .|++|||||.|||+|||+||+|.++|.||+||||||||++++|||++|+|||||||||||||||.|
T Consensus 83 ~~taFtVsVDa~~~~g~tTGISA~DRa~TIr~ladp~~~~~Df~rPGHvfPL~A~~GGvl~R~GHTEAAVDLarLAGL~P 162 (555)
T PRK09319 83 NQTAFTVSIDAGPELGVSTGISAEDRARTIQVAINPDTKPEDLRRPGHIFPLRAKEGGVLKRAGHTEAAVDLARLAGLYP 162 (555)
T ss_pred CCceEEEEEeccccCCCCCCcCHHHHHHHHHHHhCCCCChhhcCCCCCccceeeccCCCCCCCChHHHHHHHHHHcCCCc
Confidence 889999999987 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCCCCCcCChhHHHHHHHhcCCceEeehhHHHHHhhccccccccccccccCCCCcEEEEEEEecCCCceEEEE
Q 008469 295 AAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAM 374 (564)
Q Consensus 295 aaVicEiv~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e~lVer~~~~~lpT~~G~F~~~~Yr~~~dg~EHlAL 374 (564)
|+|||||+++||+|||++++++||++|+||+|+|+|||+||+++|++|+++++++|||.||+|++++|++..++.||+||
T Consensus 163 aaVicEi~~~dG~mar~~~l~~fA~~h~L~iisi~dLi~yR~~~e~~V~rv~~~~lpT~~G~F~~~~yr~~~~g~eHvAL 242 (555)
T PRK09319 163 AGVICEIQNPDGSMARLPELKEYAKQHGLKLISIADLISYRLQNERFVYREAVAKLPSQFGQFQAYGYRNELDGSEHVAL 242 (555)
T ss_pred eEEEEEEecCCCCccCHHHHHHHHHHcCCcEEEhHHhHHHHhhccccceEEEEEeeecCCccEEEEEEEeCCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCC--CCceeEEeccCCcccccccCCCCCChHHHHHHHHHHHHhCCEEEEEEeCCCCCCcchhhhhhhhccccCCC
Q 008469 375 VKGDIGD--GQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGR 452 (564)
Q Consensus 375 V~Gdi~~--~~~vLVRVHSeCltgDvfgS~rCDCg~QL~~AL~~Ia~~G~GVlVYLr~qEGRGiGL~~Kl~AY~Lqd~g~ 452 (564)
|+|++.. ++||||||||+|+|||+|||.+|||++||+.||++|+++|+||||||| ||||||||.||+++|.||++|+
T Consensus 243 vkGd~~~~~~~pvLVRVHSeClTGDvfgS~rCDCg~QL~~AL~~Ia~eG~GVlVYLr-qEGRGiGL~nKl~aY~LQd~G~ 321 (555)
T PRK09319 243 VKGDPANFKDEPVLVRMHSECLTGDAFGSLRCDCRMQLEAALKMIENEGEGVVVYLR-QEGRGIGLINKLKAYSLQDGGL 321 (555)
T ss_pred EcCCcccccCCCceEEEeccCcHHHHhcCCCCCCHHHHHHHHHHHHhcCCEEEEEeC-CCCcchhHHHHHHHHhhhhcCC
Confidence 9999963 578999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred CchHhhhhcCCCCCCcChhHHHHHHHHcCCCceecccCCCCcccccccCCcEEEEEeeccCCCChhhHHHHHHHHHhcCC
Q 008469 453 DTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 532 (564)
Q Consensus 453 DTveAn~~LG~~~D~RdYgigAQILrdLGV~~IrLLTNNP~K~~aL~g~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH 532 (564)
||++||..+||+.|.|+||+|||||++|||++||||||||+|+.+|++|||+|++++|+.+++|++|++||+||++||||
T Consensus 322 DTveAn~~lG~~~D~RdYgigAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvpl~~~~~~~n~~YL~tK~~k~gH 401 (555)
T PRK09319 322 DTVEANERLGFPADLRNYGVGAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVPLLIEANDYNAEYLATKAEKLGH 401 (555)
T ss_pred ChhhhhhhcCCcccceehhHHHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecccCCCCcchhHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccc-ceeecC
Q 008469 533 IYGLESNGRL-TNLING 548 (564)
Q Consensus 533 ~l~~~~~~~~-~~~~~~ 548 (564)
++..+.-... ..|...
T Consensus 402 ~l~~~~~~~~~~~~~~~ 418 (555)
T PRK09319 402 LLLQTYLVTIAIAWDGE 418 (555)
T ss_pred ccCCCccccEEEEecCC
Confidence 9987654333 346543
No 3
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=4.8e-132 Score=1050.05 Aligned_cols=399 Identities=64% Similarity=1.058 Sum_probs=392.2
Q ss_pred CCCCHHHHHHHHHcCCEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCceEEEecChhhhhhcCCccccccccCcc
Q 008469 136 GFSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDE 215 (564)
Q Consensus 136 ~~~~Ve~AI~aLr~G~~VvV~DdedREnEgdLV~AAe~~T~e~iaFm~r~~~Glicvam~~e~~~rL~Lp~M~~~~~n~~ 215 (564)
.|++|++||++||+|+||||+||++||||||||+|||.+|++.||||++|++|+||+||++++|++|+||+|+.. |++
T Consensus 3 ~~~~v~~ai~~lr~G~~Vvl~D~~~re~egdlv~aAe~~t~e~i~fm~~~~~Glic~~lt~~~a~~L~L~~m~~~--~~~ 80 (402)
T PRK09311 3 MFDSIEEAIADIAAGKAVIVVDDEDRENEGDLIFAAEKATPELVAFMVRHTSGYVCVPLTEEDADRLDLPPMVAH--NQD 80 (402)
T ss_pred ccchHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEchhCCHHHHHHHHHhCCCceEEecCHHHHhhCCCCccccc--CCC
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999976 778
Q ss_pred cCCCceeEeeecCCCCCcCCChhhHHHHHHHHHcCCCCCCCCCCCCccceeeeccCCcccccchhHHHHHHHHHcCCCce
Q 008469 216 KLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPA 295 (564)
Q Consensus 216 ~~~taFtVsVDa~~g~tTGISA~DRA~TIraLAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarlAGl~Pa 295 (564)
..+|+||||||+++|++|||||.|||+|||+||+|.++|+||++|||||||++++|||++|+|||||||||||||||.|+
T Consensus 81 ~~~t~ftvsvd~~~g~~TGISa~dRa~Tir~la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~~lAgl~Pa 160 (402)
T PRK09311 81 SHGTAFTVSVDAANGVTTGISAADRATTIRLLADPASKPADFTRPGHVFPLRAKPGGVLRRAGHTEAAVDLARLAGLQPA 160 (402)
T ss_pred CCCCceEEEEEccCCcccccchhHHHHHHHHHhCccCChhhccCCCcccceeeccCCCccCCChHHHHHHHHHHcCCCce
Confidence 88999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCcCChhHHHHHHHhcCCceEeehhHHHHHhhccccccccccccccCCCCcEEEEEEEecCCCceEEEEE
Q 008469 296 AVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMV 375 (564)
Q Consensus 296 aVicEiv~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e~lVer~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALV 375 (564)
+|||||+++||+|||.+++++||++|+||+++++|||+||+++|++|+++++.+|||.||+|++++|++..++.||+|||
T Consensus 161 avi~ei~~~~G~~~~~~~~~~fA~~~~l~~v~i~dli~yr~~~e~~v~~v~~~~lpt~~G~f~~~~y~~~~~~~eH~ALv 240 (402)
T PRK09311 161 GVICEIVNEDGTMARVPELRVFADEHDLALITIADLIAYRRRHEKLVEREVEARLPTRFGEFRAIGYTSILDGKEHVALV 240 (402)
T ss_pred EEEEEEecCCCcccchHHHHHHHHHcCCeEEEeechHHHHhhccccceeEEEEEeecCCccEEEEEEEECCCCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCceeEEeccCCcccccccCCCCCChHHHHHHHHHHHHhCCEEEEEEeCCCCCCcchhhhhhhhccccCCCCch
Q 008469 376 KGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTV 455 (564)
Q Consensus 376 ~Gdi~~~~~vLVRVHSeCltgDvfgS~rCDCg~QL~~AL~~Ia~~G~GVlVYLr~qEGRGiGL~~Kl~AY~Lqd~g~DTv 455 (564)
+|++.+++||||||||+|+|||+|||.+|||+|||+.||++|+++|+||||||++||||||||.+|+++|.||++|+||+
T Consensus 241 ~Gd~~~~~~vlVRVHs~c~tgDvfgs~~cdc~~qL~~Al~~I~~eG~GvlvyL~~qegrg~gl~~Kl~ay~lq~~g~dt~ 320 (402)
T PRK09311 241 KGDIGDGEDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAQIAEEGRGVVLYMRGQEGRGIGLLHKLRAYQLQDEGYDTV 320 (402)
T ss_pred eCCCCCCCceeEEEeccCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEecCCcccchHHHHHHHHhhhhcCCChh
Confidence 99999889999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred HhhhhcCCCCCCcChhHHHHHHHHcCCCceecccCCCCcccccccCCcEEEEEeeccCCCChhhHHHHHHHHHhcCCCCC
Q 008469 456 EANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYG 535 (564)
Q Consensus 456 eAn~~LG~~~D~RdYgigAQILrdLGV~~IrLLTNNP~K~~aL~g~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~l~ 535 (564)
+||.++|++.|+|+||+|||||++|||++||||||||+|+.+|++|||+|++++|+.+++|++|.+||+||++||||+|.
T Consensus 321 ~an~~lg~~~D~Rdyg~gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~~~~~~~~~n~~yl~tK~~~~gH~l~ 400 (402)
T PRK09311 321 DANLKLGFPADARDYGIGAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVPLPVRANEENERYLRTKRDRMGHDLD 400 (402)
T ss_pred hhhhhcCCCccceehhHHHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEeccCCCCChhhHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 008469 536 L 536 (564)
Q Consensus 536 ~ 536 (564)
+
T Consensus 401 ~ 401 (402)
T PRK09311 401 L 401 (402)
T ss_pred C
Confidence 4
No 4
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=8.9e-131 Score=1033.53 Aligned_cols=383 Identities=41% Similarity=0.681 Sum_probs=370.2
Q ss_pred HHHHHHHHHcCCEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCceEEEecChhhhhhcCCccccccccCcccCCC
Q 008469 140 IPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCT 219 (564)
Q Consensus 140 Ve~AI~aLr~G~~VvV~DdedREnEgdLV~AAe~~T~e~iaFm~r~~~Glicvam~~e~~~rL~Lp~M~~~~~n~~~~~t 219 (564)
+++||++||+|+||||+|+ |||||||||+||+++|||.||||++|++|+||+||++++|++|+||+|+. |. .+|
T Consensus 1 ~~~ai~al~~G~~viv~D~-~REnEgdlv~aA~~~t~e~i~fm~~~~~Glic~~~~~~~~~~l~l~~m~~---~~--~~~ 74 (387)
T PRK09318 1 MEELREAFLEGKPVILIDR-NRENEADFVYPAQIITEEVVNFFLSYGKGLLCLTADEEDLLKRGFFKLPS---NG--GET 74 (387)
T ss_pred CHHHHHHHHCCCeEEEEeC-CCCccccEEEEhhhCCHHHHHHHHHHCCceEEEeCCHHHHhhcCCccccC---CC--CCC
Confidence 3789999999999999997 89999999999999999999999999999999999999999999999984 32 458
Q ss_pred ceeEeeecCCCCCcCCChhhHHHHHHHHHcCCCCCCCCCCCCccceeeeccCCcccccchhHHHHHHHHHcCCCceEEEE
Q 008469 220 AFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLC 299 (564)
Q Consensus 220 aFtVsVDa~~g~tTGISA~DRA~TIraLAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarlAGl~PaaVic 299 (564)
+||||||++ .+|||||.|||+|||+||+ .++|.||+||||||||.+. ||++|+||||||||||||||+.|++|||
T Consensus 75 aftvsvd~~--~~TGISa~DRa~Tir~la~-~~~~~df~~PGHvfpL~~~--gvl~R~GhTEaavdL~~lAGl~p~~vic 149 (387)
T PRK09318 75 NFFIPVDYG--TGTGISASERALTCRKLAE-GLYVHEFRYPGHVTLLGGI--GFNRRRGHTEASLELSELLGFKRYAVIV 149 (387)
T ss_pred CEEEEEcCC--CCCCcCHHHHHHHHHHHHh-cCCHHHhcCCCccCCCCCc--cccccCCcHHHHHHHHHHcCCCceEEEE
Confidence 999999996 3599999999999999999 6789999999999999775 7999999999999999999999999999
Q ss_pred EEeCCCCCcCChhHHHHHHHhcCCceEeehhHHHHHhhccccccccccccccCCCCcEEEEEEEecCCCceEEEEEeccC
Q 008469 300 EVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDI 379 (564)
Q Consensus 300 Eiv~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e~lVer~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALV~Gdi 379 (564)
|||++||+|||++++++||++|+||+++|+|||+||+++|++|+++++++|||.||+|++++|++..++.||+|||+|++
T Consensus 150 ei~~~dG~m~~~~~~~~fA~~h~l~~i~i~dli~~r~~~e~~V~~v~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~g~~ 229 (387)
T PRK09318 150 EILDEKGDSHDLDYVLKLAEKFSLPVLEIDDVWKEFVRRKQLIKVKAEAKLPTDYGEFEIVSFENHLDGKEHVAIVKEPL 229 (387)
T ss_pred EEecCCCccccHHHHHHHHHHCCCcEEEHHHHHHHHHhccCceEEEEEEecccCcccEEEEEEEeCCCCcEEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCceeEEeccCCcccccccCCCCCChHHHHHHHHHHHHhCCEEEEEEeCCCCCCcchhhhhhhhccccCCCCchHhhh
Q 008469 380 GDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANE 459 (564)
Q Consensus 380 ~~~~~vLVRVHSeCltgDvfgS~rCDCg~QL~~AL~~Ia~~G~GVlVYLr~qEGRGiGL~~Kl~AY~Lqd~g~DTveAn~ 459 (564)
. +||||||||+|+|||+|||.+|||+|||+.||++|+++| ||||||| ||||||||.+|+++|.||++|+||++||.
T Consensus 230 ~--~~vLVRVHSec~tgDvfgs~~CdCg~qL~~Al~~Ia~eG-GvlvYLr-qegrgigl~~Kl~ay~lq~~g~dt~eAn~ 305 (387)
T PRK09318 230 G--EVPLVRIHSECVTGDTLSSLRCDCGSQLANFLRMISKEG-GILIYLR-QEGRGIGLSNKIKAYELQDKGLDTVEANR 305 (387)
T ss_pred C--CCceEEEeecccHHHHhcCCCCCCcchHHHHHHHHHHcC-CEEEEEC-CCCcchhHHHHHHHHhhhhcCCCchhhhh
Confidence 5 489999999999999999999999999999999999999 9999998 99999999999999999999999999999
Q ss_pred hcCCCCCCcChhHHHHHHHHcCCCceecccCCCCcccccccCCcEEEEEeeccCCCChhhHHHHHHHHHhcCCCCCCC
Q 008469 460 ELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLE 537 (564)
Q Consensus 460 ~LG~~~D~RdYgigAQILrdLGV~~IrLLTNNP~K~~aL~g~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~l~~~ 537 (564)
+|||+.|+|+||+|||||++|||++||||||||+|+.+|++|||+|++++|+++++|++|++||+||++||||+|...
T Consensus 306 ~lg~~~D~RdygigAqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vpl~~~~~~~n~~Yl~tK~~k~gH~l~~~ 383 (387)
T PRK09318 306 ALGFKEDERDYAAAFQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVPLYGEVTKYNRFYLKTKVEKLGHKLELR 383 (387)
T ss_pred hcCCCccceeeeHHHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEeccCCCCCchhHHHHHHHHHhhCCCcCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999765
No 5
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=100.00 E-value=6e-121 Score=954.77 Aligned_cols=366 Identities=43% Similarity=0.702 Sum_probs=349.8
Q ss_pred CCCCHHHHHHHHHcCCEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCceEEEecChhhhhhcCCccccccccCcc
Q 008469 136 GFSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDE 215 (564)
Q Consensus 136 ~~~~Ve~AI~aLr~G~~VvV~DdedREnEgdLV~AAe~~T~e~iaFm~r~~~Glicvam~~e~~~rL~Lp~M~~~~~n~~ 215 (564)
.|++|++||++||+|+||||+||++||||||||+|||++|||.||||++|++|+||+||++++|++|+||+|++. |++
T Consensus 2 ~~~~i~~ai~~l~~G~~viv~Dd~~rE~egdlv~~A~~~t~e~i~fm~~~~~Glic~~l~~~~~~~L~Lp~m~~~--~~~ 79 (369)
T PRK12485 2 AFNTIEEIIEDYRQGKMVLLVDDEDRENEGDLLLAAERCDAQAINFMAREARGLICLTLTDEHCQRLGLEQMVPS--NGS 79 (369)
T ss_pred CcccHHHHHHHHHCCCeEEEEeCCCCCCcccEEEEhhhCCHHHHHHHHHhCCceEEEeCCHHHHhhCCCCccccc--CCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999976 888
Q ss_pred cCCCceeEeeecCCCCCcCCChhhHHHHHHHHHcCCCCCCCCCCCCccceeeeccCCcccccchhHHHHHHHHHcCCCce
Q 008469 216 KLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPA 295 (564)
Q Consensus 216 ~~~taFtVsVDa~~g~tTGISA~DRA~TIraLAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarlAGl~Pa 295 (564)
.++|+|||||||+.|++|||||.|||+|||+||+|.++|.||++|||||||++++|||++|+||||||||||||||+.|+
T Consensus 80 ~~~~~ftvsvda~~g~~TGISa~DRa~Tir~la~~~~~~~df~~PGHvfpl~a~~ggvl~R~GhtEaavdL~~lAgl~p~ 159 (369)
T PRK12485 80 VFSTAFTVSIEAATGVTTGISAADRARTVAAAVAPNARPEDLVQPGHIFPLRAREGGVLTRAGHTEAGCDLARLAGFSPA 159 (369)
T ss_pred CCCCCEEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCeeCeEEecCCCCCCCCChHHHHHHHHHHcCCCce
Confidence 88999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCcCChhHHHHHHHhcCCceEeehhHHHHHhhccccccccccccccCCCCcEEEEEEEecCCCceEEEEE
Q 008469 296 AVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMV 375 (564)
Q Consensus 296 aVicEiv~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e~lVer~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALV 375 (564)
+||||||++||+|||++++++||++|+||+|+|+|||+||+++|++|+++++++|||.||.|++++|++..++.||+||+
T Consensus 160 avi~ei~~~dg~m~~~~~~~~fA~~h~l~~i~i~~li~yr~~~e~~V~~v~~~~lpT~~G~f~~~~y~~~~~g~eHvALv 239 (369)
T PRK12485 160 SVIVEVMNDDGTMARRPDLEVFAAKHGIKIGTIADLIHYRLSTEHTIKRIGERELPTVHGTFRLVTYEDRIEGGVHMAMV 239 (369)
T ss_pred EEEEEEecCCCCccChHHHHHHHHHcCCcEEEHHHHHHHHHhccccceeEEEEEeecCCCCEEEEEEEeCCCCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCceeEEeccCCcccccccCCCC-CChHHHHHHHHHHHHhCCEEEEEEeCCCCCCcchhhhhhhhccccCCCCc
Q 008469 376 KGDIGDGQDILVRVHSECLTGDIFGSARC-DCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDT 454 (564)
Q Consensus 376 ~Gdi~~~~~vLVRVHSeCltgDvfgS~rC-DCg~QL~~AL~~Ia~~G~GVlVYLr~qEGRGiGL~~Kl~AY~Lqd~g~DT 454 (564)
+|++.+++||||||||+|+|||+|||.+| ||+|||+.||++|+++|+|||||||+|+ ++|||.||+++|..|+.+++.
T Consensus 240 ~G~~~~~~~vlVRvHSecltgDv~gS~~c~d~g~qL~~Al~~I~~eG~GvlvYLr~~~-~~~gl~~kl~a~~~~~~~~~~ 318 (369)
T PRK12485 240 MGDIRREQPTLVRVHVIDPLRDLVGAEYAGPANWTLWAALQKVAEEGHGVVVVLANHE-SSQALLERIPQLTQPPRQYQR 318 (369)
T ss_pred eCCCCCCCCceEEEecccchhhhhcCCCCCccHHHHHHHHHHHHHhCCEEEEEecCCC-chhhHHHHHHHHHhHhhCCCc
Confidence 99998889999999999999999999865 9999999999999999999999999555 669999999999877666653
Q ss_pred hHhhhhcCCCCCCcChhHHHHHHHHcCCCceecccCCCCcccccccCCcEEEEEeecc
Q 008469 455 VEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLI 512 (564)
Q Consensus 455 veAn~~LG~~~D~RdYgigAQILrdLGV~~IrLLTNNP~K~~aL~g~GIeV~ervpl~ 512 (564)
.+ ..|+|+||+||||||+|||++|||| |||.|+.+|++|||+|++++|+.
T Consensus 319 ~d-------~r~~r~ygigAqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~~~vp~~ 368 (369)
T PRK12485 319 SQ-------SRIYSEVGTGAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVESIPFP 368 (369)
T ss_pred cc-------chhhhhhhHHHHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEEEEecCC
Confidence 11 2356799999999999999999999 78999999999999999999974
No 6
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=100.00 E-value=4.8e-118 Score=933.67 Aligned_cols=364 Identities=48% Similarity=0.785 Sum_probs=355.3
Q ss_pred CCCCHHHHHHHHHcCCEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCceEEEecChhhhhhcCCccccccccCcc
Q 008469 136 GFSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDE 215 (564)
Q Consensus 136 ~~~~Ve~AI~aLr~G~~VvV~DdedREnEgdLV~AAe~~T~e~iaFm~r~~~Glicvam~~e~~~rL~Lp~M~~~~~n~~ 215 (564)
.|++|++||++||+|+||||+||++||||||||+|||.+|++.||||++|++|+||+||++++|++|+||+|+.. |.+
T Consensus 2 ~~~~i~~Ai~~lr~G~~Viv~D~~~re~egdlv~aAe~~t~e~v~fm~~~~~Glic~~lt~~ra~~L~L~~m~~~--~~~ 79 (367)
T PRK14019 2 TLASIEEIIADIRAGRMVILVDEEDRENEGDLVMAAEFVTPEAINFMAKHGRGLICLTLTEERCEQLGLPLMTYR--NGT 79 (367)
T ss_pred CCccHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHHHhCCCCeEEecCHHHHhhcCCCccccc--CCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999976 778
Q ss_pred cCCCceeEeeecCCCCCcCCChhhHHHHHHHHHcCCCCCCCCCCCCccceeeeccCCcccccchhHHHHHHHHHcCCCce
Q 008469 216 KLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPA 295 (564)
Q Consensus 216 ~~~taFtVsVDa~~g~tTGISA~DRA~TIraLAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarlAGl~Pa 295 (564)
.++++||||||+++|++|||||.|||+||+.||++.++|+||++|||||||++++||+++|+|||||||||||||||.|+
T Consensus 80 ~~~~~ftvsvd~~~g~~TGISa~DRa~Tir~la~~~~~~~df~~PGHv~PL~a~~ggvl~R~GhtEaavdLarlAgl~Pa 159 (367)
T PRK14019 80 QYGTNFTVSIEAAEGVTTGISAADRARTIQAAVARDAKPEDIVQPGHIFPLMAQPGGVLVRAGHTEAGCDLAALAGLTPA 159 (367)
T ss_pred cCCCceEEEEEcCCCccceeecHHHHHHHHHHhcCCCChhhcCCCCCccceeecccCcccCCCchHHHHHHHHHcCCCce
Confidence 88999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCcCChhHHHHHHHhcCCceEeehhHHHHHhhccccccccccccccCCCCcEEEEEEEecCCCceEEEEE
Q 008469 296 AVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMV 375 (564)
Q Consensus 296 aVicEiv~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e~lVer~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALV 375 (564)
+|+|||+++||+||+.+++++||++|+||+|+|+|||+||+++|++|++++++++||.||+|++++|++..++.||+||+
T Consensus 160 avi~ei~~~~g~~~~~~~~~~fA~~h~L~~v~i~dli~yr~~~~~~v~~v~~~~lpt~~G~f~~~~y~~~~~~~eH~Alv 239 (367)
T PRK14019 160 AVICEIMKDDGTMARLPDLEEFAKEHGLKIGTIADLIHYRSRTESIVERVAERPMQTAHGEFRLVAYRDKPSGSTHLALV 239 (367)
T ss_pred EEEEEEecCCCcccchHHHHHHHHHcCCcEEEHHHHHHHHhhcccccccceeEeeccCCccEEEEEEEeCCCCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCceeEEeccCCcccccccCCCCCChHHHHHHHHHHHHhCCEEEEEEeCCCCCCcchhhhhhhhccccCCCCch
Q 008469 376 KGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTV 455 (564)
Q Consensus 376 ~Gdi~~~~~vLVRVHSeCltgDvfgS~rCDCg~QL~~AL~~Ia~~G~GVlVYLr~qEGRGiGL~~Kl~AY~Lqd~g~DTv 455 (564)
+|++..++||||||||+|+|||+|||.+|||+|||+.||++|+++|+||||||| ||||||||.||+++ |+
T Consensus 240 ~Gd~~~~~~vlVRvHS~c~tgDvfgs~~cdcg~qL~~al~~I~~~G~GvlvyL~-qegrgigl~~k~~~---------~~ 309 (367)
T PRK14019 240 KGTICPDEETLVRVHEPLSVLDLLEVGQPTHSWSLDAAMAAIAEAGSGVVVLLN-CGDDGEHLLDRFRA---------EE 309 (367)
T ss_pred eCCcCCCCceeEEEeeccchHhHhcCCCCCcHHHHHHHHHHHHhcCCEEEEEEc-cCCchhhHHHhhhh---------hh
Confidence 999988889999999999999999999999999999999999999999999998 99999999999986 45
Q ss_pred HhhhhcCCCCCCcChhHHHHHHHHcCCCceecccCCCCcccccccCCcEEEEEeecc
Q 008469 456 EANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLI 512 (564)
Q Consensus 456 eAn~~LG~~~D~RdYgigAQILrdLGV~~IrLLTNNP~K~~aL~g~GIeV~ervpl~ 512 (564)
+||..+|++.|+|+||+||||||+|||++||||| ||.|+++|++|||+|++|+|+.
T Consensus 310 ~an~~lg~~~d~R~y~igaqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~~~~ 365 (367)
T PRK14019 310 AAAALKRRPVDYRTYGIGAQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYVPMP 365 (367)
T ss_pred hhhhhcCCCcccceehHHHHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEecCC
Confidence 7999999999999999999999999999999999 7999999999999999999974
No 7
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=5.2e-115 Score=899.32 Aligned_cols=337 Identities=44% Similarity=0.722 Sum_probs=324.1
Q ss_pred CCCCHHHHHHHHHcCCEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCceEEEecChhhhhhcCCccccccccCcc
Q 008469 136 GFSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDE 215 (564)
Q Consensus 136 ~~~~Ve~AI~aLr~G~~VvV~DdedREnEgdLV~AAe~~T~e~iaFm~r~~~Glicvam~~e~~~rL~Lp~M~~~~~n~~ 215 (564)
.|++|++||++||+|+||||+||+|||||||||+|||++|||.||||+||++|+||+||++++|++|+||+|+.. |++
T Consensus 2 ~~~~i~~ai~~l~~G~~Viv~Dd~~REnEgdlv~aAe~~T~e~i~fm~~~~~GliC~~~~~~~~~~L~Lp~mv~~--n~~ 79 (339)
T PRK09314 2 PIKRVEEAIEDIKNGKMLIMVDDEDRENEGDLVYAAIFSTPEKVNFMATHARGLICVSLTKELAKKLELPPMVSK--NTS 79 (339)
T ss_pred CcccHHHHHHHHHCCCeEEEEeCCCCCCcccEEEEhhhCCHHHHHHHHHhCCCceEEECCHHHHhhCCCCccccc--CCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999986 788
Q ss_pred cCCCceeEeeecCCCCCcCCChhhHHHHHHHHHcCCCCCCCCCCCCccceeeeccCCcccccchhHHHHHHHHHcCCCce
Q 008469 216 KLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPA 295 (564)
Q Consensus 216 ~~~taFtVsVDa~~g~tTGISA~DRA~TIraLAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarlAGl~Pa 295 (564)
.++|+|||||||+ +++|||||.|||+|||+||++.++|+||++|||||||++++|||++|+||||||||||||||+.|+
T Consensus 80 ~~~taFtvsVda~-~~~TGISA~DRa~Tir~la~~~~~~~df~~PGHvfPL~a~~gGvl~R~GhTEaavdLa~lAGl~p~ 158 (339)
T PRK09314 80 NHETAFTVSIDAK-EATTGISAFERDMTIKLLADDTSKPSDFVRPGHIFPLIAKDGGVLVRTGHTEGSVDLCKLAGLKPV 158 (339)
T ss_pred CCCCCeEEEEecC-CCCCCCCHHHHHHHHHHHhCCCCCHHHcCCCCceeeEEEcCCCcccCCCCCchhhHHHHHcCCCce
Confidence 8899999999998 579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCcCChhHHHHHHHhcCCceEeehhHHHHHhhccccccccccccccCCCCcEEEEEEEecCCCceEEEEE
Q 008469 296 AVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMV 375 (564)
Q Consensus 296 aVicEiv~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e~lVer~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALV 375 (564)
+||||||++||+|||++++++||++|+||+++|+|||+||+++|++|+++++++|||.||+|++++|++. ++.||+|||
T Consensus 159 ~vicEil~~dG~ma~~~~l~~fA~~h~l~~isi~dli~yr~~~e~~v~~~~~~~lpt~~g~f~~~~y~~~-~~~eHlALv 237 (339)
T PRK09314 159 AVICEIMKEDGTMARRDDLEDFAKKHNLKMIYVSDLVEYRLKNESLIKEEEKEESEFAGFKAEKYTFLDH-LQNEHIAFK 237 (339)
T ss_pred EEEEEEecCCCCcccHHHHHHHHHHcCCcEEEHHHHHHHHHhcccceEEEEEEecCCCCccEEEEEEEcC-CCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988 899999999
Q ss_pred eccCCCCCceeEEeccCCcccccccCCCCCChHHHHHHHHHHHHhCCEEEEEEeCCCCCCcchhhhhhhhccccCCCCch
Q 008469 376 KGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTV 455 (564)
Q Consensus 376 ~Gdi~~~~~vLVRVHSeCltgDvfgS~rCDCg~QL~~AL~~Ia~~G~GVlVYLr~qEGRGiGL~~Kl~AY~Lqd~g~DTv 455 (564)
+|++.. +|||||||+|+|||+|++ ||.+||+.||++|+++| ||||||| ||||+
T Consensus 238 ~G~~~~--~vlVRVHSec~tgd~l~~---~~~~qL~~Al~~I~~eG-GvlvYLr-qegr~-------------------- 290 (339)
T PRK09314 238 FGEIKL--TPNVKFHKIGSDFELLTS---DKFSELLKAIEYLKKNG-GVLIFLN-TESKE-------------------- 290 (339)
T ss_pred eCCCCC--CccEEEeccCChHHhhCC---CcHHHHHHHHHHHHHcC-CEEEEEc-CCCCC--------------------
Confidence 999963 899999999999999984 55599999999999999 9999999 99884
Q ss_pred HhhhhcCCCCCCcChhHHHHHHHHcCCCceecccCC-CCcccccccCCcEEEEEeec
Q 008469 456 EANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNN-PSKYVGLKGYGLAVAGRVPL 511 (564)
Q Consensus 456 eAn~~LG~~~D~RdYgigAQILrdLGV~~IrLLTNN-P~K~~aL~g~GIeV~ervpl 511 (564)
+| ++|+||+|||||++|||++||||||| |+|+++|++|||+|++|+.+
T Consensus 291 -an-------~~RdygigaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~e~v~~ 339 (339)
T PRK09314 291 -NN-------QVKDYGIGAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIVETIEL 339 (339)
T ss_pred -cc-------cccchhHHHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEEEEEeC
Confidence 22 48999999999999999999999999 99999999999999999864
No 8
>PRK08815 GTP cyclohydrolase; Provisional
Probab=100.00 E-value=1.9e-108 Score=862.56 Aligned_cols=351 Identities=31% Similarity=0.491 Sum_probs=331.9
Q ss_pred CCCCHHHHHHHHHcCCEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCceEEEecChhhhhhcCCccccccccCcc
Q 008469 136 GFSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDE 215 (564)
Q Consensus 136 ~~~~Ve~AI~aLr~G~~VvV~DdedREnEgdLV~AAe~~T~e~iaFm~r~~~Glicvam~~e~~~rL~Lp~M~~~~~n~~ 215 (564)
.+.+|++||++||+|+||||+||++|| |||+|||.+||+.||||++|++|++|++|++++|++|+||+|.
T Consensus 16 ~~~~ie~Ai~~lr~G~~Viv~Dde~Re---dLV~aAe~~t~e~infm~~~~~Glicl~lt~~ra~~L~L~~m~------- 85 (375)
T PRK08815 16 AAIRCERAAAELRAGRPVLLTDAQGQR---RAVIALDSSTAQSAAAFARAAQGRHYLFLTATRAQVLGLEAPQ------- 85 (375)
T ss_pred hhhHHHHHHHHHHCCCeEEEEcCCCCe---EEEEEhhhCCHHHHHHHHHhcCCceEEECCHHHHhhcCCCCCc-------
Confidence 467899999999999999999999996 9999999999999999999999999999999999999999992
Q ss_pred cCCCceeEeeecCCCCCcCCChhhHHHHHHHHHcCCCCCCCCCCCCccceeeeccCCcccccchhHHHHHHHHHcCCCce
Q 008469 216 KLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPA 295 (564)
Q Consensus 216 ~~~taFtVsVDa~~g~tTGISA~DRA~TIraLAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarlAGl~Pa 295 (564)
.||++|. || +.|||+||++++++ +|.||++|||||| ||||||||||||.||
T Consensus 86 ----~~t~~is-------~i-d~dRa~Ti~~~~~~--~~~d~~~PGHif~---------------EAavDLarLAGl~Pa 136 (375)
T PRK08815 86 ----GARVALP-------DV-DYDRLAALAYLRDG--RVPAPWAPGDALD---------------AGAVEIARLALLLPA 136 (375)
T ss_pred ----CcEEeEe-------cc-hHHHHHHHHHHhcC--CccccCCCCCCcc---------------HHHHHHHHHcCCCce
Confidence 1233332 33 37999999999999 5899999999997 999999999999999
Q ss_pred EEEEEEeCCCCCcCChhHHHHHHHhcCCceEeehhHHHHHh-hccccccccccccccCCC-CcEEEEEEEecCCCceEEE
Q 008469 296 AVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRR-KRDKLVDRSSAARIPTMW-GPFTAYCYRSILDGIEHIA 373 (564)
Q Consensus 296 aVicEiv~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~-~~e~lVer~~~~~lpT~~-G~F~~~~Yr~~~dg~EHlA 373 (564)
||||||+++|+ + +|| +||+++|+|||+||. ++|++|++++++++||.| |+|++++|++..++.||+|
T Consensus 137 avi~Ei~~~~~--~------~fa---~L~i~tI~dLi~yR~~~~e~~v~~v~~~~lpt~~~g~f~~~~yr~~~~~~eH~A 205 (375)
T PRK08815 137 MVAVPLPVHDE--A------AFA---GCQALALADLDAGCATSAAAGYELVTRTPVPLRGLGMTEFVVFRGGVAQRDQVA 205 (375)
T ss_pred EEEEEEccCCC--h------hhC---CCcEeeHHHHHHHHHhCcccceEEEEEEecccCCcCcEEEEEEEeCCCCcEEEE
Confidence 99999999743 2 776 999999999999998 889999999999999995 9999999999999999999
Q ss_pred EEeccCCCCCceeEEeccCCcccccccCCCCCChHHHHHHHHHHHHhCCEEEEEEeCCCCCCcchhhhhhhhccccCCCC
Q 008469 374 MVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRD 453 (564)
Q Consensus 374 LV~Gdi~~~~~vLVRVHSeCltgDvfgS~rCDCg~QL~~AL~~Ia~~G~GVlVYLr~qEGRGiGL~~Kl~AY~Lqd~g~D 453 (564)
||+|++.+++||||||||+|+|||+|||.+|||+|||+.||++|+++|+||||||+ |||||+||.+|+++|.+|++|+|
T Consensus 206 Lv~G~~~~~~~vlVRVHs~c~tgDvfgs~~cdc~~qL~~Al~~I~~~G~GVlvyL~-qegrg~gl~~kl~ay~lq~~g~d 284 (375)
T PRK08815 206 IVVGQPDLSSAVPVRVHSSCLTGDLFGSLKCDCGDQLRHGLAKLKELGGGVLLYLD-QEGRGNGIAAKMRAYGYQHAGLD 284 (375)
T ss_pred EEeCCCCCCCCceEEEeccCcHHHHhcCCCCCCHHHHHHHHHHHHhhCCEEEEEEc-CCCccchHHHHHHHHhhhhccCC
Confidence 99999998889999999999999999999999999999999999999999999997 99999999999999999999999
Q ss_pred chHhhhhcCCCCCCcChhHHHHHHHHcCCCceecccCCCCcccccccCCcEEEEEeeccCCCChhhHHHHHHHHHhcCCC
Q 008469 454 TVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 533 (564)
Q Consensus 454 TveAn~~LG~~~D~RdYgigAQILrdLGV~~IrLLTNNP~K~~aL~g~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~ 533 (564)
|++||..+|++.|+|+||+|||||++|||++||||||||+|+.+|++|||+|++++|+.++.|++|.+||+||++||||+
T Consensus 285 t~~a~~~lg~~~D~RdygigAQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp~~~~~~~~n~~yl~tK~~~~gh~ 364 (375)
T PRK08815 285 TIDADAQLGFGPDERRYGSAVAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIRVTGRITAENERYLRTKADRAGHA 364 (375)
T ss_pred chhhhhhcCCCccceeeeHHHHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEeccCCCCCchhhhHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 008469 534 YGLE 537 (564)
Q Consensus 534 l~~~ 537 (564)
++++
T Consensus 365 l~~~ 368 (375)
T PRK08815 365 LDVD 368 (375)
T ss_pred cCcc
Confidence 9754
No 9
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=9.1e-77 Score=572.57 Aligned_cols=201 Identities=58% Similarity=0.970 Sum_probs=197.2
Q ss_pred CCCCHHHHHHHHHcCCEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCceEEEecChhhhhhcCCccccccccCcc
Q 008469 136 GFSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDE 215 (564)
Q Consensus 136 ~~~~Ve~AI~aLr~G~~VvV~DdedREnEgdLV~AAe~~T~e~iaFm~r~~~Glicvam~~e~~~rL~Lp~M~~~~~n~~ 215 (564)
.+.+|++||++||+|+||||+||||||||||||+||+++|||.||||++|++|+||+||++++|++|+||+|+.. |++
T Consensus 2 ~~~~ie~ai~al~~G~~Viv~DdedREnEgDli~aAe~vT~e~i~fm~~~a~GliC~~lt~e~~~~L~Lp~Mv~~--n~~ 79 (203)
T COG0108 2 MFERVEEAIEALRAGKPVIVVDDEDRENEGDLIFAAEAVTPEQIAFMRRHASGLICVALTEERAKRLGLPPMVDN--NTD 79 (203)
T ss_pred chhhHHHHHHHHHCCCeEEEEcCCCCCCcccEEEEhhhCCHHHHHHHHHhCCeeEEEeCCHHHHHhCCCcccccc--CCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999987 888
Q ss_pred cCCCceeEeeecCCCCCcCCChhhHHHHHHHHHcCCCCCCCCCCCCccceeeeccCCcccccchhHHHHHHHHHcCCCce
Q 008469 216 KLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPA 295 (564)
Q Consensus 216 ~~~taFtVsVDa~~g~tTGISA~DRA~TIraLAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarlAGl~Pa 295 (564)
.++|+|||||||++ |+|||||.|||.|||.|+++.++|+||+||||||||+|++||||+|+|||||+|||||||||.|+
T Consensus 80 ~~~taFtVsVd~~~-t~TGISa~DRa~TIr~l~~~~~~~~df~~PGHVfpL~A~~ggVl~R~GHTEasVdLarlAGl~Pa 158 (203)
T COG0108 80 AHGTAFTVSVDARE-TTTGISAADRALTIRALADPGAKPSDFRRPGHVFPLRAKDGGVLERRGHTEAAVDLARLAGLKPA 158 (203)
T ss_pred CCCCceEEEEeccc-CcCCcCHHHHHHHHHHHhcCCCCHHHcCCCCCeeeeeeccCCeeccCChHHHHHHHHHHcCCCCc
Confidence 99999999999996 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCcCChhHHHHHHHhcCCceEeehhHHHHHhhcc
Q 008469 296 AVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRD 339 (564)
Q Consensus 296 aVicEiv~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e 339 (564)
+||||||++||+|||.+++++||++||||+++|+|||+||+++|
T Consensus 159 ~VicEi~~~dG~mar~~~~~~fa~~h~l~~iti~dli~yr~~~e 202 (203)
T COG0108 159 GVICEIMNDDGTMARLPELEEFAKEHGLPVITIEDLIEYRKKHE 202 (203)
T ss_pred EEEEEEeCCCccccChHHHHHHHHHcCCcEEEHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999998876
No 10
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=5e-74 Score=562.90 Aligned_cols=202 Identities=46% Similarity=0.831 Sum_probs=197.6
Q ss_pred CCCCHHHHHHHHHcCCEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCceEEEecChhhhhhcCCccccccccCcc
Q 008469 136 GFSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDE 215 (564)
Q Consensus 136 ~~~~Ve~AI~aLr~G~~VvV~DdedREnEgdLV~AAe~~T~e~iaFm~r~~~Glicvam~~e~~~rL~Lp~M~~~~~n~~ 215 (564)
.|++|++||++||+|+||||+||++||||||||+|||++|||.||||+||++|+||+||++++|++|+||+|+.. |++
T Consensus 13 ~~~~ie~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~~T~e~v~fm~r~~~GliC~a~~~~~~~~L~Lp~m~~~--n~~ 90 (218)
T PRK00910 13 PITRVENALQALREGRGVLLLDDEDRENEGDIIYSVEHLTNAQMALMIRECSGIVCLCLTDAQADKLELPPMVVN--NNS 90 (218)
T ss_pred ccccHHHHHHHHHCCCeEEEEeCCCCCccccEEEEhhhCCHHHHHHHHHhCCccEEEECCHHHHhhCCCCccccC--CCC
Confidence 368899999999999999999999999999999999999999999999999999999999999999999999975 788
Q ss_pred cCCCceeEeeecCCCCCcCCChhhHHHHHHHHHcCCCCCCCCCCCCccceeeeccCCcccccchhHHHHHHHHHcCCCce
Q 008469 216 KLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPA 295 (564)
Q Consensus 216 ~~~taFtVsVDa~~g~tTGISA~DRA~TIraLAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarlAGl~Pa 295 (564)
.++|+||||||+++|++|||||.|||+|||+||++.++|+||+||||||||++++|||++|+||||||||||+|||+.|+
T Consensus 91 ~~~taFtvsVda~~g~~TGISA~DRa~Tir~la~~~~~~~df~rPGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~ 170 (218)
T PRK00910 91 ANQTAFTVSIEAKHGVTTGVSAQDRVTTIKTAANPQAKPEDLARPGHVFPLRARAGGVLARRGHTEGTVDLMQMAGLQPA 170 (218)
T ss_pred CCCCCeEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeCCCCEecCCCccHHHHHHHHHcCCCce
Confidence 88999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCcCChhHHHHHHHhcCCceEeehhHHHHHhhcc
Q 008469 296 AVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRD 339 (564)
Q Consensus 296 aVicEiv~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e 339 (564)
+||||||++||+||+++++++||++|+||+|+|+|||+||+++|
T Consensus 171 ~vicEil~~dG~ma~~~~l~~fA~~h~l~~isi~dli~yr~~~~ 214 (218)
T PRK00910 171 GVLCELTNPDGTMAKTPEIIAFGKLHNMPVLTIEDMVMYRNQFD 214 (218)
T ss_pred EEEEEEecCCCCcCCHHHHHHHHHHcCCcEEEHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999887
No 11
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=3.1e-73 Score=556.04 Aligned_cols=201 Identities=51% Similarity=0.829 Sum_probs=196.3
Q ss_pred CCCCHHHHHHHHHcCCEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCceEEEecChhhhhhcCCccccccccCcc
Q 008469 136 GFSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDE 215 (564)
Q Consensus 136 ~~~~Ve~AI~aLr~G~~VvV~DdedREnEgdLV~AAe~~T~e~iaFm~r~~~Glicvam~~e~~~rL~Lp~M~~~~~n~~ 215 (564)
.+++|++||++||+|+||||+||++||||||||+|||.+|+|.||||+||++|+||+||++++|++|+||+|+.. |++
T Consensus 12 ~~~~i~~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~~t~e~i~fm~~~~~GliC~a~~~~~~~~L~Lp~m~~~--n~~ 89 (214)
T PRK01792 12 AEERVINAINAFKQGNGVLVLDDEDRENEGDLIFPAETITPEQMAKLIRYGSGIVCLCITDELCQQLDLPPMVQH--NTS 89 (214)
T ss_pred ccccHHHHHHHHHCCCeEEEEeCCCCCccccEEEEhhhCCHHHHHHHHHHCCccEEEeCCHHHHhhCCCCccccc--CCC
Confidence 367899999999999999999999999999999999999999999999999999999999999999999999986 778
Q ss_pred cCCCceeEeeecCCCCCcCCChhhHHHHHHHHHcCCCCCCCCCCCCccceeeeccCCcccccchhHHHHHHHHHcCCCce
Q 008469 216 KLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPA 295 (564)
Q Consensus 216 ~~~taFtVsVDa~~g~tTGISA~DRA~TIraLAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarlAGl~Pa 295 (564)
.++|+|||||||++|++|||||.|||+|||+||++.++|+||++|||||||++++|||++|+||||||||||||||+.|+
T Consensus 90 ~~~taFtvsVda~~g~~TGISA~DRa~Tir~la~~~~~~~df~~PGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~ 169 (214)
T PRK01792 90 VNKTAFTVTIEAAKGVSTGVSAADRVTTIQAAIADNAKPSDLHRPGHVFPLRAANGGVLTRRGHTEAAVDLARLAGYKEA 169 (214)
T ss_pred CCCCCEEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeccCCCccCCChHHHHHHHHHHcCCCce
Confidence 88999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCcCChhHHHHHHHhcCCceEeehhHHHHHhhc
Q 008469 296 AVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKR 338 (564)
Q Consensus 296 aVicEiv~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~ 338 (564)
+||||||++||+|||++++++||++|+||+++|+|||+||+++
T Consensus 170 ~vicEil~~dG~ma~~~~~~~fA~~~~l~~isi~dli~yr~~~ 212 (214)
T PRK01792 170 GVICEITNDDGTMARTPEIVEFAKKFGYAVVTIEDLVEYRLKY 212 (214)
T ss_pred EEEEEEecCCCCccCHHHHHHHHHHcCCcEEEHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999765
No 12
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=1.7e-71 Score=547.62 Aligned_cols=201 Identities=46% Similarity=0.778 Sum_probs=196.3
Q ss_pred CCHHHHHHHHHcCCEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCceEEEecChhhhhhcCCccccccccCcccC
Q 008469 138 SSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKL 217 (564)
Q Consensus 138 ~~Ve~AI~aLr~G~~VvV~DdedREnEgdLV~AAe~~T~e~iaFm~r~~~Glicvam~~e~~~rL~Lp~M~~~~~n~~~~ 217 (564)
++|++||++||+|+||||+||++||||||||++||++|+|.||||+||++|+||+||++++|++|+||+|+.. |.+.+
T Consensus 19 ~~i~~ai~al~~Gk~Viv~Dde~REnEgDlv~aAe~~T~e~v~fm~r~~~GliCva~~~~~a~~L~Lp~m~~~--n~~~~ 96 (230)
T PRK00014 19 TRLERALQHLRIGRPVILMDDFDRENEADLIVAADKLTVPVMAQLIRDGSGIVCLCLPGETLDRLELPPMVDS--NRSRY 96 (230)
T ss_pred hhHHHHHHHHHCCCeEEEEECCCCCccccEEEEhhhCCHHHHHHHHHHCCccEEeeCCHHHHhhCCCCccccc--CCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999986 88888
Q ss_pred CCceeEeeecCCCCCcCCChhhHHHHHHHHHcCCCCCCCCCCCCccceeeeccCCcccccchhHHHHHHHHHcCCCceEE
Q 008469 218 CTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAV 297 (564)
Q Consensus 218 ~taFtVsVDa~~g~tTGISA~DRA~TIraLAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarlAGl~PaaV 297 (564)
+++||||||+++|++|||||.|||+|||+||++.++|+||+||||||||++++|||++|+||||||||||+|||+.|++|
T Consensus 97 ~t~ftvSVDa~~gttTGISA~DRa~Tir~La~~~~~~~DF~rPGHVfPL~a~~gGvl~R~GHTEAavdLa~lAGl~P~~v 176 (230)
T PRK00014 97 STAFTVSIEAREGVTTGVSAVDRVTTIRAAIAPGARSGDVVSPGHVFPLRAQPGGVLTRRGHTEGSVDLAALAGLRPAGV 176 (230)
T ss_pred CCCeEEEEEcCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEecCCCEecCCCccHHHHHHHHHcCCCceEE
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCcCChhHHHHHHHhcCCceEeehhHHHHHhhccc
Q 008469 298 LCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDK 340 (564)
Q Consensus 298 icEiv~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e~ 340 (564)
|||||++||+|||.+++++||++|+||+++|+|||+||+++..
T Consensus 177 icEil~~dG~ma~~~~l~~fA~~~~l~iisi~dli~y~~~~~~ 219 (230)
T PRK00014 177 LCELMNADGTMMRGASLERYAAKEGLVALAIDELAAHLQARGA 219 (230)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHcCCcEEEHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999987644
No 13
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=100.00 E-value=3.2e-71 Score=537.77 Aligned_cols=197 Identities=54% Similarity=0.896 Sum_probs=191.4
Q ss_pred CCCHHHHHHHHHcCCEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCceEEEecChhhhhhcCCccccccccCccc
Q 008469 137 FSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEK 216 (564)
Q Consensus 137 ~~~Ve~AI~aLr~G~~VvV~DdedREnEgdLV~AAe~~T~e~iaFm~r~~~Glicvam~~e~~~rL~Lp~M~~~~~n~~~ 216 (564)
|++|++||++||+|+||||+||++||||||||+|||++|||.||||++|++|+||+||++++|++|+||+|+.. |++.
T Consensus 2 ~~~ie~ai~al~~G~~Viv~Dd~~REnEgdlv~aAe~~T~e~v~fm~~~~~GliC~~~~~~~a~~L~Lp~mv~~--n~~~ 79 (199)
T TIGR00506 2 FERVEEALEALKKGEIVLVYDDEDRENEGDLIVAAEFITPEQIAFMRRHAGGLICVAITPDIADKLDLPPMVDI--NTSA 79 (199)
T ss_pred cchHHHHHHHHHCCCeEEEEeCCCCCccEeEEEEhhhCCHHHHHHHHHhCCCCEEEECCHHHHhhCCCCccccc--cCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999987 8888
Q ss_pred CCCceeEeeecCCC-CCcCCChhhHHHHHHHHHcCCCCCCCCCCCCccceeeeccCCcccccchhHHHHHHHHHcCCCce
Q 008469 217 LCTAFTVTVDAKHG-TTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPA 295 (564)
Q Consensus 217 ~~taFtVsVDa~~g-~tTGISA~DRA~TIraLAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarlAGl~Pa 295 (564)
++|+||+|||+.++ ++|||||.|||+|||+|+++.++|+||+||||||||++++|||++|+||||||||||+|||+.|+
T Consensus 80 ~~t~~t~sV~~~~~~~~TGISa~DRa~Tir~~a~~~~~~~df~~PGHvfPL~a~~gGvl~R~GhTEaavdL~~lAGl~p~ 159 (199)
T TIGR00506 80 SGTASTFTITVAHRKTFTGISANDRALTIRAALADVVKPSDFRRPGHVFPLRAADGGVLTRGGHTEASVDLAELAGLKPA 159 (199)
T ss_pred CCCceEEEEEeCCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeccCCCcCCCChHHHHHHHHHHcCCCce
Confidence 89998888887666 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCcCChhHHHHHHHhcCCceEeehhHHHHH
Q 008469 296 AVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYR 335 (564)
Q Consensus 296 aVicEiv~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr 335 (564)
+||||||++||+|+|.+++++||++|+||+++|+|||+||
T Consensus 160 ~vicEil~~dG~m~~~~~~~~fA~~~~l~~isi~dli~yr 199 (199)
T TIGR00506 160 GVICEMMNDDGTMARKPELMEYAKKHNLKLISIEDLIEYR 199 (199)
T ss_pred EEEEEEeCCCCCccCHHHHHHHHHHcCCcEEEHHHHHhhC
Confidence 9999999999999999999999999999999999999996
No 14
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=100.00 E-value=3.8e-71 Score=535.84 Aligned_cols=194 Identities=60% Similarity=0.971 Sum_probs=180.3
Q ss_pred HHHHHHHHHcCCEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCceEEEecChhhhhhcCCccccccccCcccCCC
Q 008469 140 IPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCT 219 (564)
Q Consensus 140 Ve~AI~aLr~G~~VvV~DdedREnEgdLV~AAe~~T~e~iaFm~r~~~Glicvam~~e~~~rL~Lp~M~~~~~n~~~~~t 219 (564)
|++||++|++|+||||+||++||||||||++||.+|++.||||+||++|+||+||++++|++|+||+|+.. |++.+++
T Consensus 1 ie~ai~al~~G~~Viv~D~~~rE~egdlv~aAe~~t~e~v~fm~~~~~Glicva~~~~~~~~L~L~~m~~~--~~~~~~~ 78 (194)
T PF00926_consen 1 IEEAIEALKAGKPVIVVDDEDRENEGDLVFAAEFVTPEKVNFMIRHASGLICVAMPEERADRLGLPPMVPD--NTDPHGT 78 (194)
T ss_dssp HHHHHHHHHTTS-EEEECSSTTT-EEEEEEEGGG--HHHHHHHHHHBCSEEEEEEEHHHHHHTT-SBSCSS--CCTTTS-
T ss_pred CHHHHHHHHCCCeEEEEeCCCCCcceeEEeEHHhCCHHHHHHHHHhcCCCeEecCCHHHHhHCCCCCCCCc--CCCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999985 7888999
Q ss_pred ceeEeeecCCCCCcCCChhhHHHHHHHHHcCCCCCCCCCCCCccceeeeccCCcccccchhHHHHHHHHHcCCCceEEEE
Q 008469 220 AFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLC 299 (564)
Q Consensus 220 aFtVsVDa~~g~tTGISA~DRA~TIraLAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarlAGl~PaaVic 299 (564)
+|||||||+.|++|||||.|||+|||+||+++++|+||++|||||||++++|||++|+||||||||||+|||+.|++|||
T Consensus 79 ~ftvsVD~~~g~~TGISa~DRa~Tir~La~~~~~~~df~~PGHv~Pl~a~~gGvl~R~GhtEaavdLa~lAGl~p~avi~ 158 (194)
T PF00926_consen 79 AFTVSVDAAKGTTTGISAADRARTIRALADPDAFPEDFVRPGHVFPLRARPGGVLERRGHTEAAVDLARLAGLSPVAVIC 158 (194)
T ss_dssp -BBCEEEESSS-SSSSSHHHHHHHHHHHHSTTGHGGGEEEEEEEEEEEE-TTGGGTSSSHHHHHHHHHHHTTS-SBEEEE
T ss_pred CeeEeeecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCCccceecCCcccCCCChHHHHHHHHHHhCCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCcCChhHHHHHHHhcCCceEeehhHHHHH
Q 008469 300 EVVDDDGSMARLPKLREFAKRENLKIISIADLIRYR 335 (564)
Q Consensus 300 Eiv~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr 335 (564)
|||++||+||+++++++||++|+||+|+|+|||+||
T Consensus 159 eil~~dG~~~~~~~~~~fA~~~~l~~vsi~dli~yr 194 (194)
T PF00926_consen 159 EILDDDGDMARRDELEEFAKKHGLPIVSIEDLIEYR 194 (194)
T ss_dssp EBBETTSSBHCHHHHHHHHHHTT-EEEEHHHHHHHH
T ss_pred EEeCCCCCcCCHHHHHHHHHHcCCcEEEHHHHHhhC
Confidence 999999999999999999999999999999999997
No 15
>KOG1284 consensus Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.5e-71 Score=566.94 Aligned_cols=335 Identities=52% Similarity=0.730 Sum_probs=325.2
Q ss_pred cccccccCCccccccccccCCCc-ccCCccCCCCCCCCCCCCCCCCCHHHHHHHHHcCCEEEEEeCCCCCCcccEEEEcC
Q 008469 94 QLVGIELQPDAIAFGALAADTAP-TTFGFSSDDDEFDLDSPTEGFSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQ 172 (564)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~p~~~~~~Ve~AI~aLr~G~~VvV~DdedREnEgdLV~AAe 172 (564)
.+..++.+++..+|+|+++++.| ..+.|++.++|+++++|+..|.+|+++|+++|.|++|+|+||++||||+||++++.
T Consensus 19 ~~~p~~~r~~i~s~~~~~s~~~p~~~d~~~~~d~e~~~~~~~~~~~si~~ri~~~r~gk~~ivldd~~rdneg~L~~a~~ 98 (357)
T KOG1284|consen 19 VSKPLESRPDIDSTYTVNSRIDPFPMDWGAATDEEGGPDRLPRVFCSIPARIPTFRHGKFVIVLDDEDRDNEGDLIIAAG 98 (357)
T ss_pred ccCcccccCccccccccccccCCccccccccccccCCCCCcccceechhhhhhcccCCcEEEEEecccccCCCCcceecc
Confidence 34447789999999999999999 67999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhCCceEEEecChhhhhhcCCccccccccCcccCCCceeEeeecCCCCCcCCChhhHHHHHHHHHc-CC
Q 008469 173 LATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLAS-RD 251 (564)
Q Consensus 173 ~~T~e~iaFm~r~~~Glicvam~~e~~~rL~Lp~M~~~~~n~~~~~taFtVsVDa~~g~tTGISA~DRA~TIraLAd-~~ 251 (564)
..+++.++|.++|++|++|+.|..+.+.+|.||+|+....+.+...++||++||.++|++||||++||+.|++.|++ ..
T Consensus 99 ~~~~~~~aF~vr~~~g~vd~~m~ga~~~~L~l~~~v~~~~~de~~~~~~titvd~~~gt~TgVsahde~~T~~~l~s~~~ 178 (357)
T KOG1284|consen 99 NVIREDMAFLVRHGSGIVDVMMRGAYLGRLHLPLMVFEKNDDETYETAFTITVDRAHGTVTGVSAHDEAYTGETLASARC 178 (357)
T ss_pred cccchhhhhhhhcCCceechhhhhcccccccccccccccccccccccceeEEEehhcCccceeEEecccccchhhccccc
Confidence 99999999999999999999999999999999999987667788999999999999999999999999999999999 67
Q ss_pred CCCCCCCCCCccceeeec-cCCcccccchhHHHHHHHHHcCCCceEEEEEEeCC-CCCcCChhHHHHHHHhcCCceEeeh
Q 008469 252 SKPGDFNRPGHIFPLKYR-EGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDD-DGSMARLPKLREFAKRENLKIISIA 329 (564)
Q Consensus 252 s~p~Df~rPGHVfPL~a~-~gGvl~R~GhTEAAVdLarlAGl~PaaVicEiv~~-dG~mar~~~l~~fA~~h~L~ivsi~ 329 (564)
+.|+||.||||++|++++ +|||++|.|||||+||||.++|+.|.+++||++++ ||.|+++++++.||++|++|+++++
T Consensus 179 ~~pedf~rpghivpl~~~~~GGVl~r~ghtea~vdL~~l~gl~pl~~l~elv~q~~g~m~~lpd~r~fa~~~~i~~~~i~ 258 (357)
T KOG1284|consen 179 DCPEDFDRPGHIVPLRYRLDGGVLERLGHTEAGVDLCELAGLYPLGVLGELVVQADGSMARLPDCRSFAAEHAIPLISIE 258 (357)
T ss_pred CChhhhccccccccceeecCCCeEEEccccccchhHHHHcCCCchhhhhhhhhcCCcccccCccHhhhhHhhcCChhhhh
Confidence 889999999999999999 69999999999999999999999999999999998 8999999999999999999999999
Q ss_pred hHHHHHhhccccccccccccccCCCCcEEEEEEEecCCCceEEEEEeccCCCCCceeEEeccCCcccccccCCCCCChHH
Q 008469 330 DLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQ 409 (564)
Q Consensus 330 DLi~yr~~~e~lVer~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALV~Gdi~~~~~vLVRVHSeCltgDvfgS~rCDCg~Q 409 (564)
|+|+|+.+|...|++++.+++||.||.|..+||++..++.||++.++|.+..+..++||+|++|+++||||+.+|+|+.|
T Consensus 259 dliryl~~r~~~v~~~s~~~~~~~~~~r~~~~~~s~~~~~E~i~~~~g~v~~~~kie~r~h~e~l~~~i~~~~~~t~~sq 338 (357)
T KOG1284|consen 259 DLIRYLTKRPEKVENISDAPQPTKCVERPAMCFKSWLDGKEGIASVEGEVYLGTKIEVRGHLECLPDDIFGNRKRTGGSQ 338 (357)
T ss_pred hHHHHHhcChhhhhcccCCCcCceeeeccccceeehhcccccccccceEEeechhhhheeehhcccchhcCCcCCCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCEEEEEE
Q 008469 410 LALAMQQIEAAGRGVLVYL 428 (564)
Q Consensus 410 L~~AL~~Ia~~G~GVlVYL 428 (564)
|+.+|++|+++|+|+++||
T Consensus 339 ~~~~~r~~e~~g~~~~~al 357 (357)
T KOG1284|consen 339 LNYFMRTIEAAGRGVFVAL 357 (357)
T ss_pred HHHHHHHHHhhcceeEEeC
Confidence 9999999999999999997
No 16
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=100.00 E-value=3.1e-68 Score=513.78 Aligned_cols=192 Identities=58% Similarity=1.029 Sum_probs=188.6
Q ss_pred cccccccccccCCCCcEEEEEEEecCCCceEEEEEeccCCCCCceeEEeccCCcccccccCCCCCChHHHHHHHHHHHHh
Q 008469 341 LVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAA 420 (564)
Q Consensus 341 lVer~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALV~Gdi~~~~~vLVRVHSeCltgDvfgS~rCDCg~QL~~AL~~Ia~~ 420 (564)
.+++++++++||.||.|++++|++..++.+|+|+|+|++.+ +||||||||||+|||+|||.||||+|||+.||++|+++
T Consensus 2 ~ve~~~~a~lpt~~g~f~~~~y~~~~d~~~HlAlv~G~~~~-~~~lVRvHsEcltgDvl~s~rcdcg~ql~~al~~i~~~ 80 (193)
T COG0807 2 LVERVAEAKLPTELGEFRIVGYRDKIDGKEHLALVKGDISA-EPVLVRVHSECLTGDVLGSLRCDCGEQLEAALRRIAEE 80 (193)
T ss_pred ceeeeecccCCCCCceEEEEEEeccCCCceEEEEEecCCCC-CCceEEEeccccccchhcCCCCCcHHHHHHHHHHHhhc
Confidence 57899999999999999999999999999999999999976 78999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCcchhhhhhhhccccCCCCchHhhhhcCCCCCCcChhHHHHHHHHcCCCceecccCCCCccccccc
Q 008469 421 GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKG 500 (564)
Q Consensus 421 G~GVlVYLr~qEGRGiGL~~Kl~AY~Lqd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~~IrLLTNNP~K~~aL~g 500 (564)
|+||||||| ||||||||.||++||.|||+|.||++||.++||+.|+|+||+|||||+||||++||||||||+|+.+|++
T Consensus 81 g~GVvvYLr-qEGrgigl~~ki~ay~lqd~g~dtv~an~~lg~~~D~R~ygigAqIL~dLGI~~irLLtnnp~K~~~l~~ 159 (193)
T COG0807 81 GSGVVVYLR-QEGRGIGLLNKIRAYALQDKGADTVEANLALGFPADERDYGIGAQILKDLGIKKIRLLTNNPRKIYGLEG 159 (193)
T ss_pred CceEEEEee-cCCccchHHHHHHHHHhhhcCCChHHHHHhhcCCchHHHHHHHHHHHHHcCCcEEEEecCChHHHHHHHh
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeeccCCCChhhHHHHHHHHHhcCCCC
Q 008469 501 YGLAVAGRVPLITPIKKENKRYLETKRAKMGHIY 534 (564)
Q Consensus 501 ~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~l 534 (564)
|||+|++|+|+....|++|..||+||+.||||++
T Consensus 160 ~Gi~vverv~~~~~~~~~n~~yl~tk~~k~gh~~ 193 (193)
T COG0807 160 FGINVVERVPLIVGANPENEFYLKTKKEKMGHLL 193 (193)
T ss_pred CCceEEEEeecCCCCCcchHHHHHHHHHhhccCC
Confidence 9999999999999999999999999999999986
No 17
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=2.9e-67 Score=516.62 Aligned_cols=202 Identities=51% Similarity=0.890 Sum_probs=197.6
Q ss_pred CCCCHHHHHHHHHcCCEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCceEEEecChhhhhhcCCccccccccCcc
Q 008469 136 GFSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDE 215 (564)
Q Consensus 136 ~~~~Ve~AI~aLr~G~~VvV~DdedREnEgdLV~AAe~~T~e~iaFm~r~~~Glicvam~~e~~~rL~Lp~M~~~~~n~~ 215 (564)
.+.+|++||++||+|+||||+||++||||||||+|||.+|++.|+||++|++|+||++|++++|++|+||+|+.. |.+
T Consensus 12 ~~~~ve~Ai~~Lr~G~pViv~D~~~re~Egdlv~aAe~~t~e~v~fm~~~~~G~ic~~lt~~ra~~L~L~~m~~~--~~~ 89 (217)
T PRK03353 12 PFERVEAALDALREGRGVMVLDDEDRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLTEERRKQLDLPMMVEN--NTS 89 (217)
T ss_pred hhhHHHHHHHHHHCCCeEEEEeCCCCCCceeEEeEhhhCCHHHHHHHHHhcCCceEEecCHHHHhhcCCCccccc--cCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999986 888
Q ss_pred cCCCceeEeeecCCCCCcCCChhhHHHHHHHHHcCCCCCCCCCCCCccceeeeccCCcccccchhHHHHHHHHHcCCCce
Q 008469 216 KLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPA 295 (564)
Q Consensus 216 ~~~taFtVsVDa~~g~tTGISA~DRA~TIraLAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarlAGl~Pa 295 (564)
..+++||||||++.|++|||||.|||+|||.|+++.++|.||++|||||||++++|||++|+|||||||||||||||.|+
T Consensus 90 ~~~~~ftvsVd~~~g~~TGISa~DRa~Tir~l~~~~~~~~df~~PGHv~pL~a~~ggvl~R~GhtEaavdLa~lAgl~P~ 169 (217)
T PRK03353 90 QYGTAFTVTIEAAEGVTTGVSAADRITTIRAAIADGAKPSDLNRPGHVFPLRAQPGGVLTRRGHTEATIDLMTLAGLKPA 169 (217)
T ss_pred CCCCceEEEEECCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCccceeeccCCcccCCCchHHHHHHHHHcCCCce
Confidence 88999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCcCChhHHHHHHHhcCCceEeehhHHHHHhhcc
Q 008469 296 AVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRD 339 (564)
Q Consensus 296 aVicEiv~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e 339 (564)
+|+|||+++||+|++.+++++||++|+||+|+++|||+||+++|
T Consensus 170 avi~ei~~~~G~~~~~~~~~~fA~~~~l~~v~i~dli~~r~~~~ 213 (217)
T PRK03353 170 GVLCELTNDDGTMARAPECIAFAKQHNMPVLTIEDLVAYRQAHE 213 (217)
T ss_pred EEEEEeecCCCCcccHHHHHHHHHHcCCcEEEHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999877
No 18
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated
Probab=100.00 E-value=2.7e-66 Score=509.30 Aligned_cols=193 Identities=27% Similarity=0.409 Sum_probs=180.0
Q ss_pred CHHHHHHHHHcCCEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCceEEEecChhhhhhcCCcccccccc------
Q 008469 139 SIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKE------ 212 (564)
Q Consensus 139 ~Ve~AI~aLr~G~~VvV~DdedREnEgdLV~AAe~~T~e~iaFm~r~~~Glicvam~~e~~~rL~Lp~M~~~~~------ 212 (564)
+|++||++||+|+||||+||++||||||||+||+++|||.||||++|++|+||+||++++|++|+||+|+....
T Consensus 2 ~ie~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~vT~e~i~fm~~~a~GliCval~~~~a~~L~Lp~m~~~~~~~~~~~ 81 (219)
T PRK05773 2 DFEEARKALESGIPVLIYDFDGREEEVDMVFYAGAVTWKSIYTLRKNAGGLICYATSNSEGKTLGLNFLAEILKRHELYR 81 (219)
T ss_pred CHHHHHHHHHCCCeEEEEECCCCCccccEEEEhhhCCHHHHHHHHHHCCceEEEeCCHHHHhhCCCchhhhhcccccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999987632
Q ss_pred ---CcccCC--CceeEeeecCCCCCcCCChhhHHHHHHHHHcC--------CCC----CCCCCCCCccceeeeccCCccc
Q 008469 213 ---NDEKLC--TAFTVTVDAKHGTTTGVSARDRATTVLTLASR--------DSK----PGDFNRPGHIFPLKYREGGVLK 275 (564)
Q Consensus 213 ---n~~~~~--taFtVsVDa~~g~tTGISA~DRA~TIraLAd~--------~s~----p~Df~rPGHVfPL~a~~gGvl~ 275 (564)
|++.++ ++||||||+. |++|||||.|||+|||+||++ ... |+||++|||||||+++ ||++
T Consensus 82 ~~~~~~~~~~~taFtvsVd~~-~~~TGISa~DRa~Tir~La~~~~~~~~~~~~~~~~~~~df~~PGHVfpL~a~--Gvl~ 158 (219)
T PRK05773 82 KLVKKPSYGDEPAFSLWVNHV-KTKTGISDYDRALTIRELHKVVELAKTNPEEAREEFYENFYSPGHVPILIGR--GIRE 158 (219)
T ss_pred cccccCCCCCCceEEEEEcCC-CCCCCcCHHHHHHHHHHHHhhhhccccCccccccCCHHHcCCCCCcceeccC--cccc
Confidence 344454 7999999985 999999999999999999984 222 7999999999999998 8999
Q ss_pred ccchhHHHHHHHHHcCCCceEEEEEEeCCCCCcCChhHHHHHHHhcCCceEeehhHHHHH
Q 008469 276 RAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYR 335 (564)
Q Consensus 276 R~GhTEAAVdLarlAGl~PaaVicEiv~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr 335 (564)
|+||||||||||||||+.|++|||||||++ .|++++++++||++|+||+|+|+|||+|.
T Consensus 159 R~GHTEasvdLa~lAGl~P~~vicEil~~~-~~~~~~~~~~fA~~~~l~~isi~dli~~~ 217 (219)
T PRK05773 159 RRGHTELSIALAQAAGLEPSAVIAEMLDEK-LSLSKEKAKKIAKNLGFPLVEGKEIFKEV 217 (219)
T ss_pred CCChhHHHHHHHHHcCCCccEEEEEEeCCC-CCcCHHHHHHHHHHcCCcEEEHHHHHHHh
Confidence 999999999999999999999999999974 59999999999999999999999999985
No 19
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=100.00 E-value=3.3e-59 Score=453.45 Aligned_cols=196 Identities=51% Similarity=0.879 Sum_probs=189.5
Q ss_pred cccccccccccCCCCcEEEEEEEecCCCceEEEEEeccCCCCCceeEEeccCCcccccccCCCCCChHHHHHHHHHHHHh
Q 008469 341 LVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAA 420 (564)
Q Consensus 341 lVer~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALV~Gdi~~~~~vLVRVHSeCltgDvfgS~rCDCg~QL~~AL~~Ia~~ 420 (564)
.|+++++.++||.||+|++++|++..++.+|+|||+|++.+++|||||||++|+++|+|++.+|||++||+.||++|+++
T Consensus 2 ~v~~~~~~~~~t~~G~f~~~~y~d~~~~~~H~ALv~Gdi~~~~~vlVRVH~~~~~~Dvl~~~~~dc~~~L~~Al~~I~~~ 81 (197)
T PRK00393 2 QLKRVAEAKLPTPWGDFLMVGFEELATGKEHVALVFGDISGTEPVLVRVHSECLTGDALFSLRCDCGFQLEAALERIAEE 81 (197)
T ss_pred cEEEEEEEecccCCccEEEEEEEECCCCeEEEEEEECCCCCCCCceEEEecccCHHHHhcCCCCCCcchHHHHHHHHHHc
Confidence 47899999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCcchhhhhhhhccccCCCCchHhhhhcCCCCCCcChhHHHHHHHHcCCCceecccCCCCccccccc
Q 008469 421 GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKG 500 (564)
Q Consensus 421 G~GVlVYLr~qEGRGiGL~~Kl~AY~Lqd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~~IrLLTNNP~K~~aL~g 500 (564)
|+||||||+ |+|||+|+.+|+++|.+|+.|.|++++|..+|++.|.|+||+|||||++|||++||||||||.|+.+|+|
T Consensus 82 G~GVlVyL~-~~g~~~~l~~k~~~~~~~~~~~~~~~a~~~~~~~~d~R~yGiGAQIL~dLGV~~mrLLtn~~~k~~~L~g 160 (197)
T PRK00393 82 GRGILLYLR-QEGRGIGLLNKIRAYALQDQGLDTVEANHQLGFAADERDYTLAADMLKALGVKKVRLLTNNPKKVEALTE 160 (197)
T ss_pred CCEEEEEEc-CCCcchhHHHHHHHHhhhhccCcchhhhhhcCCCccceehhHHHHHHHHcCCCEEEECCCCHHHHHHHHh
Confidence 999999998 8999999999999999999888999998889999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeeccCCCChhhHHHHHHHHHhcCCCCCCC
Q 008469 501 YGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLE 537 (564)
Q Consensus 501 ~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~l~~~ 537 (564)
|||+|++++|+.++.+++|.+||.||++||||.+.++
T Consensus 161 ~GleV~~~~~~~~~~~~~~~~y~~~k~~~~~h~l~~~ 197 (197)
T PRK00393 161 AGINIVERVPLIVGRNPHNEHYLKTKAEKMGHLLSLD 197 (197)
T ss_pred CCCEEEEEecccCCCCchhhHHHHHHHHhhcCCCCCC
Confidence 9999999999888899999999999999999998764
No 20
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=100.00 E-value=2.7e-58 Score=445.07 Aligned_cols=191 Identities=52% Similarity=0.886 Sum_probs=185.0
Q ss_pred cccccccccCCCCcEEEEEEEecCCCceEEEEEeccCCCCCceeEEeccCCcccccccCCCCCChHHHHHHHHHHHHhCC
Q 008469 343 DRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGR 422 (564)
Q Consensus 343 er~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALV~Gdi~~~~~vLVRVHSeCltgDvfgS~rCDCg~QL~~AL~~Ia~~G~ 422 (564)
+|+++.++||.||+|++++|++..++.+|+|||+|++.+++|||||||++|+++|+|++.+|||++||+.||++|+++|+
T Consensus 1 erv~e~~~~t~~G~f~~~~y~d~~~~~~H~ALvkG~i~~~~~~lVRvH~~~~~~Dvl~~~~~dc~~~L~~al~~i~~~G~ 80 (191)
T TIGR00505 1 ERVAEAKLPTPYGDFYMVGFEEPATGKDHVALVKGDISAHTDVLVRIHSECLTGDALHSLRCDCGFQLEAALKQIAEEGR 80 (191)
T ss_pred CeEEEEecccCceeEEEEEEEECCCCcEEEEEEeCCCCCCCCceEEEecccCHHHHhcCCCCCCCchHHHHHHHHHhcCC
Confidence 47789999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCcchhhhhhhhccccCCCCchHhhhhcCCCCCCcChhHHHHHHHHcCCCceecccCCCCcccccccCC
Q 008469 423 GVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYG 502 (564)
Q Consensus 423 GVlVYLr~qEGRGiGL~~Kl~AY~Lqd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~~IrLLTNNP~K~~aL~g~G 502 (564)
||||||+ |+|||+|+.+|+++|++|+.+.+++++|..+|++.|.|+||+|||||++|||++||||||||.|+.+|+|||
T Consensus 81 GVlVyL~-~~~~~~~l~~k~~~~~~~~~~~~~~~a~~~~~~~~d~R~yGiGAQIL~dLGV~~~rLLtn~~~k~~~L~g~g 159 (191)
T TIGR00505 81 GVLIYLR-QEGRGIGLINKLRAYALQDKGYDTVQANLMLGFPADERDFSLCADILEDLGVKKVRLLTNNPKKIEILKKAG 159 (191)
T ss_pred EEEEEEC-CCCcchhHHHHHHHHhhhhcCCChhhhhhhccCcccceehhHHHHHHHHcCCCEEEECCCCHHHHHHHHhCC
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeeccCCCChhhHHHHHHHHHhcCCCC
Q 008469 503 LAVAGRVPLITPIKKENKRYLETKRAKMGHIY 534 (564)
Q Consensus 503 IeV~ervpl~~~~~~~n~~YL~tK~~k~gH~l 534 (564)
|+|++++|+.+..+++|.+||.||++||||.+
T Consensus 160 leVv~~~~~~~~~~~~~~~y~~~k~~~~~h~~ 191 (191)
T TIGR00505 160 INIVERVPLIVGRNENNEGYLDTKAEKMGHLL 191 (191)
T ss_pred CEEEEEeccccCCCcchHHHHHHHHHhhCCCC
Confidence 99999999877889999999999999999975
No 21
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=100.00 E-value=5.4e-58 Score=435.15 Aligned_cols=169 Identities=65% Similarity=1.106 Sum_probs=137.9
Q ss_pred ccccccccccCCCCcEEEEEEEecCCCceEEEEEeccCCCCCceeEEeccCCcccccccCCCCCChHHHHHHHHHHHHhC
Q 008469 342 VDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAG 421 (564)
Q Consensus 342 Ver~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALV~Gdi~~~~~vLVRVHSeCltgDvfgS~rCDCg~QL~~AL~~Ia~~G 421 (564)
|+|+++.+|||.||+|++++|++..++.+|+|||+|++.+++||||||||+|+++|+||+.+|||+|||++||++|+++|
T Consensus 1 Verv~~~~~~T~~G~f~~~~y~~~~~~~~H~ALv~G~~~~~~~~lVRvHs~~~~~Dvf~~~~~d~~~~L~~Am~~I~~~G 80 (169)
T PF00925_consen 1 VERVAECPLPTRFGEFRLHAYRDTIDGQEHLALVKGDIDPDEPVLVRVHSECLTGDVFGSLRCDCGWQLDKAMRRIAEEG 80 (169)
T ss_dssp -EEEEEEEEEETTEEEEEEEEEETTT--EEEEEEES---SSS-EEEEEEE--HHHHTS--SSSSHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEEecCCCccEEEEEEEeCCCCeEEEEEEEecCCCCCCceEEecccccHhhhcCCCCCCCcHHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCcchhhhhhhhccccCCCCchHhhhhcCCCCCCcChhHHHHHHHHcCCCceecccCCCCcccccccC
Q 008469 422 RGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGY 501 (564)
Q Consensus 422 ~GVlVYLr~qEGRGiGL~~Kl~AY~Lqd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~~IrLLTNNP~K~~aL~g~ 501 (564)
+||||||+ ||+||+|+.+|+++|++|++|.||++||..+|++.|.|+||+|||||+||||++||||||||+|+++|+||
T Consensus 81 ~GVlVyL~-~~~~g~~l~~kl~~~~~~~~g~~~~~a~~~~~~~~d~R~ygigaqIL~dLGV~~~rLLtnnp~k~~~L~g~ 159 (169)
T PF00925_consen 81 RGVLVYLR-QEGRGIGLLNKLRAYNLQDEGYDTVEANRALGFPEDLRDYGIGAQILRDLGVKKMRLLTNNPRKYVALEGF 159 (169)
T ss_dssp SEEEEEE---TTTTT-HHHHHHHHHHHTTS--HHHHHHCTT--S----THHHHHHHHHTT--SEEEE-S-HHHHHHHHHT
T ss_pred CEEEEEEc-CCCcchhHHHHHHHHHhhhcCCcchhhhhcccCccccccHHHHHHHHHHcCCCEEEECCCChhHHHHHhcC
Confidence 99999997 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeec
Q 008469 502 GLAVAGRVPL 511 (564)
Q Consensus 502 GIeV~ervpl 511 (564)
||+|+++||+
T Consensus 160 gleV~~~vp~ 169 (169)
T PF00925_consen 160 GLEVVERVPL 169 (169)
T ss_dssp T--EEEEE--
T ss_pred CCEEEEEecC
Confidence 9999999996
No 22
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=100.00 E-value=4.4e-55 Score=422.91 Aligned_cols=193 Identities=59% Similarity=1.021 Sum_probs=185.3
Q ss_pred cccccccccccCCCCcEEEEEEEecCCCceEEEEEeccCCCCCceeEEeccCCcccccccCCCCCChHHHHHHHHHHHHh
Q 008469 341 LVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAA 420 (564)
Q Consensus 341 lVer~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALV~Gdi~~~~~vLVRVHSeCltgDvfgS~rCDCg~QL~~AL~~Ia~~ 420 (564)
+|+++++.++||.||+|++++|++..++.+|+|||+|+|.+++|||||||++|+++|+||+.+|||++||++||++|+++
T Consensus 1 ~V~~~~~~~l~t~~G~f~~~~y~d~~~~~~H~ALv~Gdi~~~~~~lVRVH~~~~~~Dvl~~~~~~~~~~L~~Al~~Ia~~ 80 (193)
T cd00641 1 LVEKVAEAPLPTRFGDFRIVAFEDTDDGKEHVALVKGDPADGEPVLVRVHSECLTGDVFGSLRCDCGPQLEEALEEIAEE 80 (193)
T ss_pred CeEEEEEEEcccCcccEEEEEEEECCCCcEEEEEEeCCCCCCCCceEEEeccCCHHHHhcCCCCCCcchHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCcchhhhhhhhccccCCCCchHhhhhcCCCCCCcChhHHHHHHHHcCCCceecccCCCCccccccc
Q 008469 421 GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKG 500 (564)
Q Consensus 421 G~GVlVYLr~qEGRGiGL~~Kl~AY~Lqd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~~IrLLTNNP~K~~aL~g 500 (564)
|+||||||+ |++++.|+.+|+++|.+|+++.++.+++..++++.|.|+||+|||||++|||++||||||||.|+++|.|
T Consensus 81 g~GVlV~l~-~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~d~R~yGiGAQIL~dLGv~~mrLLs~~~~k~~~L~g 159 (193)
T cd00641 81 GGGVLLYLR-QEGRGIGLANKLRAYALQDQGLDTVEANEALGFPADARDYGLAAQILRDLGIKSVRLLTNNPDKIDALEG 159 (193)
T ss_pred CCEEEEEEC-CCCcchhHHHHHHHHhhhhcCCChhhhhhhcCCCccccchHHHHHHHHHcCCCeEEECCCCHHHHHHHHh
Confidence 999999998 9999999999999999998888888887788899999999999999999999999999999999999999
Q ss_pred CCcEEEEEeeccCCCChhhHHHHHHHHHhcCCCC
Q 008469 501 YGLAVAGRVPLITPIKKENKRYLETKRAKMGHIY 534 (564)
Q Consensus 501 ~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~l 534 (564)
|||+|++++|+.++.+++|++||.+|++||+|++
T Consensus 160 fglevv~~~~~~~~~~~~~~~y~~~k~~~~~~~~ 193 (193)
T cd00641 160 YGIEVVERVPLEVEPNEENKGYLKTKRDKMGHLL 193 (193)
T ss_pred CCCEEEEEeccCCCCChhhHHHHHhhHHhhccCC
Confidence 9999999999877888999999999999999985
No 23
>PRK07198 hypothetical protein; Validated
Probab=100.00 E-value=4.3e-41 Score=351.01 Aligned_cols=168 Identities=29% Similarity=0.504 Sum_probs=147.2
Q ss_pred EEEEEEecCCCceEEEEEeccCC----CCCceeEEeccCCcccccccCCCCCChHHH----HHHHHHHHHhCCEEEEEEe
Q 008469 358 TAYCYRSILDGIEHIAMVKGDIG----DGQDILVRVHSECLTGDIFGSARCDCGDQL----ALAMQQIEAAGRGVLVYLR 429 (564)
Q Consensus 358 ~~~~Yr~~~dg~EHlALV~Gdi~----~~~~vLVRVHSeCltgDvfgS~rCDCg~QL----~~AL~~Ia~~G~GVlVYLr 429 (564)
++++|+....+.+|+ ++|+++ +..||||||||+|++||+|||.+|||+.|| +.||++|+++|.|||||||
T Consensus 211 ~~~vf~p~~gg~~~~--i~G~p~~~~d~~~PVLVRVHSeC~tgDVFGSlrCDCg~qL~~aLe~Amk~IaeeG~GVLVYLr 288 (418)
T PRK07198 211 DLEVFLPPIGGQTVY--IFGDVTDLADPETELTCRVHDECNGSDVFGSDICTCRPYLTHGIEECIRGAQRGGVGLIVYNR 288 (418)
T ss_pred ceEEEcCCCCCeeEE--EECCcccccCCCCCceEEEeccccccccccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 378899998899954 889984 367899999999999999999999999984 7889999999999999998
Q ss_pred CCCCCCcchhhhhhhhccccC--CCCchHhh----hhcCCCCCCcChhHHHHHHHHcCCCce-ecccCCCCcccccccCC
Q 008469 430 GHEGRGIGLGHKLRAYNLQDD--GRDTVEAN----EELGLPVDSREYGIGAQMLRDLGVRTM-KLMTNNPSKYVGLKGYG 502 (564)
Q Consensus 430 ~qEGRGiGL~~Kl~AY~Lqd~--g~DTveAn----~~LG~~~D~RdYgigAQILrdLGV~~I-rLLTNNP~K~~aL~g~G 502 (564)
||||++||.+|+++|++|+. |.||++|| +.++...|+|+||+|||||++|||++| |||||||+|+.+|++||
T Consensus 289 -QEGRgiGLvnKl~aY~~qk~q~G~DT~da~~~rte~~~G~~D~RdyGlGAQILrdLGV~Km~RLLTNnp~K~~gL~GfG 367 (418)
T PRK07198 289 -KEGRALGEVTKFLVYNARKRQVGGDTAATYFARTECVAGVQDMRFQELMPDVLHWLGIRRIHRLVSMSNMKYDAITGSG 367 (418)
T ss_pred -CCCcchhHHHHHHHHhhhhhccCCchhhhhhcccccccCCCcceehhHHHHHHHHhCCChhhhhcCCCHHHHHHHHhCC
Confidence 99999999999999999853 79999975 233334699999999999999999999 99999999999999999
Q ss_pred cEEEEEeeccCCCChhhHHH-HHHHHH
Q 008469 503 LAVAGRVPLITPIKKENKRY-LETKRA 528 (564)
Q Consensus 503 IeV~ervpl~~~~~~~n~~Y-L~tK~~ 528 (564)
|+|++++|+....+++..+- +.+|..
T Consensus 368 LEVVErVpl~~~~~p~d~~vei~ak~~ 394 (418)
T PRK07198 368 IEVGERVPIPDELIPADARVEIDAKKA 394 (418)
T ss_pred CEEEEEeccCcCCCccccccchhhhhh
Confidence 99999999888777765443 555554
No 24
>KOG1284 consensus Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase [Coenzyme transport and metabolism]
Probab=99.70 E-value=3.4e-18 Score=176.28 Aligned_cols=190 Identities=25% Similarity=0.330 Sum_probs=160.3
Q ss_pred ccccC-CCCcEEEEEEEecCCCceEEEEEeccC-----------------------------------------------
Q 008469 348 ARIPT-MWGPFTAYCYRSILDGIEHIAMVKGDI----------------------------------------------- 379 (564)
Q Consensus 348 ~~lpT-~~G~F~~~~Yr~~~dg~EHlALV~Gdi----------------------------------------------- 379 (564)
.++|+ ++|.|-++.|....++.+|++++.|+.
T Consensus 68 ~ri~~~r~gk~~ivldd~~rdneg~L~~a~~~~~~~~~aF~vr~~~g~vd~~m~ga~~~~L~l~~~v~~~~~de~~~~~~ 147 (357)
T KOG1284|consen 68 ARIPTFRHGKFVIVLDDEDRDNEGDLIIAAGNVIREDMAFLVRHGSGIVDVMMRGAYLGRLHLPLMVFEKNDDETYETAF 147 (357)
T ss_pred hhhhcccCCcEEEEEecccccCCCCcceecccccchhhhhhhhcCCceechhhhhcccccccccccccccccccccccce
Confidence 33443 467777777777777777777776653
Q ss_pred ------CCCCceeEEeccCCcccccccCCCCCChHHHHHHHHHHH---H-hCCEEEEEEeCCCCCCcchhhhhhhhcccc
Q 008469 380 ------GDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIE---A-AGRGVLVYLRGHEGRGIGLGHKLRAYNLQD 449 (564)
Q Consensus 380 ------~~~~~vLVRVHSeCltgDvfgS~rCDCg~QL~~AL~~Ia---~-~G~GVlVYLr~qEGRGiGL~~Kl~AY~Lqd 449 (564)
..+..+.||.|++|.|+..++|.+|+|+.|++.+=..|. + .| ||+.|++ |+++|++|..++++|+||+
T Consensus 148 titvd~~~gt~TgVsahde~~T~~~l~s~~~~~pedf~rpghivpl~~~~~G-GVl~r~g-htea~vdL~~l~gl~pl~~ 225 (357)
T KOG1284|consen 148 TITVDRAHGTVTGVSAHDEAYTGETLASARCDCPEDFDRPGHIVPLRYRLDG-GVLERLG-HTEAGVDLCELAGLYPLGV 225 (357)
T ss_pred eEEEehhcCccceeEEecccccchhhcccccCChhhhccccccccceeecCC-CeEEEcc-ccccchhHHHHcCCCchhh
Confidence 234578999999999999999999999999999999887 6 47 9999997 9999999999999999999
Q ss_pred CCCCchHhhhhcCCCCCCcChhHHHHHHHHcCCCceecccCCCCcccccccCC--cEEEEEeeccCCC---------Chh
Q 008469 450 DGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYG--LAVAGRVPLITPI---------KKE 518 (564)
Q Consensus 450 ~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~~IrLLTNNP~K~~aL~g~G--IeV~ervpl~~~~---------~~~ 518 (564)
-|.++++++.-+-+++|.|.|+..-.|+-+++..-+|+++|||+|++..+..- ...++|+++.... ...
T Consensus 226 l~elv~q~~g~m~~lpd~r~fa~~~~i~~~~i~dliryl~~r~~~v~~~s~~~~~~~~~~r~~~~~~s~~~~~E~i~~~~ 305 (357)
T KOG1284|consen 226 LGELVVQADGSMARLPDCRSFAAEHAIPLISIEDLIRYLTKRPEKVENISDAPQPTKCVERPAMCFKSWLDGKEGIASVE 305 (357)
T ss_pred hhhhhhcCCcccccCccHhhhhHhhcCChhhhhhHHHHHhcChhhhhcccCCCcCceeeeccccceeehhcccccccccc
Confidence 99999999999999999999999999999999999999999999999988765 4557888865322 122
Q ss_pred hHHHHHHHHHhcCCCCCCCCC
Q 008469 519 NKRYLETKRAKMGHIYGLESN 539 (564)
Q Consensus 519 n~~YL~tK~~k~gH~l~~~~~ 539 (564)
..-|+.+|.++|||.+.++..
T Consensus 306 g~v~~~~kie~r~h~e~l~~~ 326 (357)
T KOG1284|consen 306 GEVYLGTKIEVRGHLECLPDD 326 (357)
T ss_pred eEEeechhhhheeehhcccch
Confidence 356999999999999877654
No 25
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=75.19 E-value=10 Score=42.67 Aligned_cols=159 Identities=26% Similarity=0.335 Sum_probs=93.1
Q ss_pred HHHHHHHHcCCEEEEEeCCCCCCcccEEEEc-----CCCCHHHHHHHH----------HhCCceEEEecChhhhhhcCCc
Q 008469 141 PEAIEDIRQGKFVVVVDDEDRENEGDLIMAA-----QLATPEAMAFIV----------KHGTGIVCVSMKGEDLERLDLP 205 (564)
Q Consensus 141 e~AI~aLr~G~~VvV~DdedREnEgdLV~AA-----e~~T~e~iaFm~----------r~~~Glicvam~~e~~~rL~Lp 205 (564)
.+.-+||++|+|||..+. -++.-+ -..|+-.+...+ ....|.+|+-++++.+..|++.
T Consensus 30 pqv~eal~~~epVVales-------tiitHgmPyp~nl~tA~~veq~vrs~GaipaTialldg~~kiGLt~e~L~~La~~ 102 (614)
T KOG3009|consen 30 PQVKEALANGEPVVALES-------TIITHGMPYPQNLSTATVVEQKVRSNGAIPATIALLDGIIKIGLTPEELETLASS 102 (614)
T ss_pred HHHHHHHhcCCCEEEeEe-------eeeecCCcCCcccccccchhhhhhcCCCcchhhhhhcceeeecCCHHHHHHHhhc
Confidence 577889999999998654 122111 011222222222 2346999999999999999884
Q ss_pred cccccccCcccCCCceeEeeecCCCCCcCCChhhHHHHHHHHHcCCCCCCCCCCCCccceeeeccCCcccccchhHH-HH
Q 008469 206 LMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEA-SV 284 (564)
Q Consensus 206 ~M~~~~~n~~~~~taFtVsVDa~~g~tTGISA~DRA~TIraLAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhTEA-AV 284 (564)
.-... ......-++++.+-.. |-||+-.+ +. +|.. ..-.=|.+||- |||-+-+-|+-- +-
T Consensus 103 g~~~~--kvsrRD~~~v~i~rlv-ggTtvaaT------m~-iA~~-~gI~vfaTggi--------ggvhr~An~smdisa 163 (614)
T KOG3009|consen 103 GPSAV--KVSRRDIASVVIVRLV-GGTTVAAT------MI-IAHA-AGIVVFATGGI--------GGVHRGANQSMDISA 163 (614)
T ss_pred Ccccc--ccccccccccceeeec-CCcchhhh------hh-hccc-ceEEEEecCCc--------chhhhccccccchhh
Confidence 32111 1122334677777665 44443221 11 1111 11233666662 666444444443 34
Q ss_pred HHHHHcCCCceEEEEEEeCCCCCcCChhHHHHHHHhcCCceEeeh
Q 008469 285 DLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIA 329 (564)
Q Consensus 285 dLarlAGl~PaaVicEiv~~dG~mar~~~l~~fA~~h~L~ivsi~ 329 (564)
||- -.|-.|++|+|+=|. +..+.+...+|-+.++.++++..
T Consensus 164 dl~-elgrtpvavv~agvk---siLdip~tle~letq~V~vvtlg 204 (614)
T KOG3009|consen 164 DLT-ELGRTPVAVVSAGVK---SILDIPKTLEYLETQGVVVVTLG 204 (614)
T ss_pred hhh-hhcCCcceEEecchh---hhccchhhhhhhccccEEEEEeC
Confidence 444 458899999999554 57778888888889988888764
No 26
>TIGR02361 dak_ATP dihydroxyacetone kinase, ATP-dependent. This family consists of examples of the form of dihydroxyacetone kinase (also called glycerone kinase) that uses ATP (2.7.1.29) as the phosphate donor, rather than a phosphoprotein as in E. coli. This form is composed of a single chain with separable domains homologous to the K and L subunits of the E. coli enzyme, and is found in yeasts and other eukaryotes and in some bacteria, including Citrobacter freundii. The member from tomato has been shown to phosphorylate dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some other aldoses and ketoses (PubMed:11985845).
Probab=73.04 E-value=9.5 Score=43.87 Aligned_cols=88 Identities=18% Similarity=0.373 Sum_probs=61.1
Q ss_pred EEEEecCCCceEEEEEeccCCCCCceeE-----EeccCCcccccccCCCCCChHHHHHHHHHHHHhCCEEEEEEeCCCCC
Q 008469 360 YCYRSILDGIEHIAMVKGDIGDGQDILV-----RVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGR 434 (564)
Q Consensus 360 ~~Yr~~~dg~EHlALV~Gdi~~~~~vLV-----RVHSeCltgDvfgS~rCDCg~QL~~AL~~Ia~~G~GVlVYLr~qEGR 434 (564)
++|+...+ ...++||.|-=..-+|-.. =+=+.+..||||-|-. ..|.-.|++.+...|.|||+..-|-.
T Consensus 33 vv~~~~~~-~~kV~lisGGGSGHEPah~G~VG~Gml~aav~G~vFaSPs---~~~i~~ai~~~~~~~~Gvl~iv~NYt-- 106 (574)
T TIGR02361 33 VVYRRDLN-KDKVSLISGGGSGHEPAHAGFVGKGMLTAAVAGDVFASPS---TKQILAAIRAVVGSEAGTLLIVKNYT-- 106 (574)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeeeccccCCCC---HHHHHHHHHHhcCCCCcEEEEecccH--
Confidence 45555443 4678999875322233110 0234577899998876 68999999999875789998876333
Q ss_pred CcchhhhhhhhccccCCCCchHhhhhcCCCCCCcChhHHHHHHHHcCCC
Q 008469 435 GIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVR 483 (564)
Q Consensus 435 GiGL~~Kl~AY~Lqd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~ 483 (564)
.|--+||+++++++.-|++
T Consensus 107 ------------------------------GD~lnF~~A~e~a~~eg~~ 125 (574)
T TIGR02361 107 ------------------------------GDRLNFGLAAEKAKAEGYN 125 (574)
T ss_pred ------------------------------HHhhhHHHHHHHHHhCCCc
Confidence 3667899999999998886
No 27
>PRK14481 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=72.10 E-value=14 Score=39.77 Aligned_cols=88 Identities=19% Similarity=0.308 Sum_probs=60.6
Q ss_pred EEEEecCCCceEEEEEeccCCCCCceeE-----EeccCCcccccccCCCCCChHHHHHHHHHHHHhCCEEEEEEeCCCCC
Q 008469 360 YCYRSILDGIEHIAMVKGDIGDGQDILV-----RVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGR 434 (564)
Q Consensus 360 ~~Yr~~~dg~EHlALV~Gdi~~~~~vLV-----RVHSeCltgDvfgS~rCDCg~QL~~AL~~Ia~~G~GVlVYLr~qEGR 434 (564)
+.|+...+ ...++|+.|-=..-+|... =+=+.|..||||-|-. ..|.-+|++.+. .|.|||+..-|-
T Consensus 35 vv~~~~~~-~~kV~lIsGGGSGHEPah~GfVG~GmLdaav~G~VFaSPs---~~~Il~ai~av~-~~~GvL~iv~NY--- 106 (331)
T PRK14481 35 VIVRKDKP-PGKVALVSGGGSGHEPAHAGFVGEGMLDAAVCGAVFTSPT---PDQILEAIKAVD-TGAGVLLIVKNY--- 106 (331)
T ss_pred EEEecCCC-CCcEEEEecCCccccccccccccCCccceeeeccccCCCC---HHHHHHHHHhcc-CCCCEEEEeCCc---
Confidence 34554443 4578888874322233110 1234588899998876 589999999996 457999877533
Q ss_pred CcchhhhhhhhccccCCCCchHhhhhcCCCCCCcChhHHHHHHHHcCCCc
Q 008469 435 GIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRT 484 (564)
Q Consensus 435 GiGL~~Kl~AY~Lqd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~~ 484 (564)
..|--+||+|+++++.-|++-
T Consensus 107 -----------------------------tGD~lnF~lA~E~a~~eGi~v 127 (331)
T PRK14481 107 -----------------------------SGDVMNFEMAAELAEMEGIEV 127 (331)
T ss_pred -----------------------------HHHhccHHHHHHHHHhCCCCE
Confidence 347788999999999999974
No 28
>PRK11468 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=68.02 E-value=19 Score=39.24 Aligned_cols=88 Identities=22% Similarity=0.347 Sum_probs=57.0
Q ss_pred EEEecCCCceEEEEEeccCCCCCceeE-----EeccCCcccccccCCCCCChHHHHHHHHHHHHhCCEEEEEEeCCCCCC
Q 008469 361 CYRSILDGIEHIAMVKGDIGDGQDILV-----RVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRG 435 (564)
Q Consensus 361 ~Yr~~~dg~EHlALV~Gdi~~~~~vLV-----RVHSeCltgDvfgS~rCDCg~QL~~AL~~Ia~~G~GVlVYLr~qEGRG 435 (564)
.|+........++|+.|-=..-+|... =+=+.|..||||-|-. ..|.-.|++.+. .|.|||+..-|-.
T Consensus 35 v~~~~~~~~~kValIsGGGSGHEPah~GyVG~GmLdAAv~G~VFaSPs---~~qI~~ai~av~-~~~GvLlivkNYt--- 107 (356)
T PRK11468 35 VTRADAPVAGKVALLSGGGSGHEPMHCGFVGQGMLDGACPGEIFTSPT---PDQMFECAMQVD-GGEGVLLIIKNYT--- 107 (356)
T ss_pred EEeCCCCCCCcEEEEecCCccccccccceecCCcccceeeccccCCCC---HHHHHHHHHhhc-CCCCEEEEecccH---
Confidence 344433324568888774322233110 0224477899998876 689999999965 5679998876433
Q ss_pred cchhhhhhhhccccCCCCchHhhhhcCCCCCCcChhHHHHHHHHcCCCc
Q 008469 436 IGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRT 484 (564)
Q Consensus 436 iGL~~Kl~AY~Lqd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~~ 484 (564)
.|--+|++|+++++.-|++-
T Consensus 108 -----------------------------GDvlNF~mAaE~a~~eGi~v 127 (356)
T PRK11468 108 -----------------------------GDVLNFETATELLHDSGVKV 127 (356)
T ss_pred -----------------------------HhhccHHHHHHHHHhCCCcE
Confidence 35667888888888878753
No 29
>TIGR02363 dhaK1 dihydroxyacetone kinase, DhaK subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the DhaK subunit of the latter type of dihydroxyacetone kinase, but it specifically excludes the DhaK paralog DhaK2 (TIGR02362) found in the same operon as DhaK and DhaK in the Firmicutes.
Probab=65.37 E-value=19 Score=38.84 Aligned_cols=89 Identities=20% Similarity=0.343 Sum_probs=60.3
Q ss_pred EEEEecCCCceEEEEEeccCCCCCceeE-----EeccCCcccccccCCCCCChHHHHHHHHHHHHhCCEEEEEEeCCCCC
Q 008469 360 YCYRSILDGIEHIAMVKGDIGDGQDILV-----RVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGR 434 (564)
Q Consensus 360 ~~Yr~~~dg~EHlALV~Gdi~~~~~vLV-----RVHSeCltgDvfgS~rCDCg~QL~~AL~~Ia~~G~GVlVYLr~qEGR 434 (564)
+.|+...+....++|+.|-=..-+|... =+=..|..||||-|-. ..|.-.|++.+.. |.|||+..-|-
T Consensus 35 vv~~~~~~~~~kV~lIsGGGSGHEPah~GfVG~GmLdAav~G~VFaSPs---~~~I~~ai~av~~-~~GvL~iv~NY--- 107 (329)
T TIGR02363 35 VIVRKDKKVNGKVALVSGGGSGHEPAHAGFVGYGMLDAAVPGEVFTSPT---PDQILEAIKAVDQ-GAGVLLIVKNY--- 107 (329)
T ss_pred EEEeCCCCCCCCEEEEecCCccccccccccccCCccceeeeccccCCCC---HHHHHHHHHhccC-CCCEEEEeCCc---
Confidence 3455444434578888875332233110 0234578899998876 6899999998765 57999877533
Q ss_pred CcchhhhhhhhccccCCCCchHhhhhcCCCCCCcChhHHHHHHHHcCCCc
Q 008469 435 GIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRT 484 (564)
Q Consensus 435 GiGL~~Kl~AY~Lqd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~~ 484 (564)
..|--+||+++++++.-|++-
T Consensus 108 -----------------------------tGD~lnF~mA~E~a~~eGi~v 128 (329)
T TIGR02363 108 -----------------------------TGDVMNFEMAAELAEDEGIKV 128 (329)
T ss_pred -----------------------------HHHhccHHHHHHHHHHcCCcE
Confidence 246778999999999999863
No 30
>PRK14479 dihydroxyacetone kinase; Provisional
Probab=62.05 E-value=20 Score=41.21 Aligned_cols=87 Identities=22% Similarity=0.374 Sum_probs=58.6
Q ss_pred EEEEecCCCceEEEEEeccCCCCCceeE-----EeccCCcccccccCCCCCChHHHHHHHHHHHHhCCEEEEEEeCCCCC
Q 008469 360 YCYRSILDGIEHIAMVKGDIGDGQDILV-----RVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGR 434 (564)
Q Consensus 360 ~~Yr~~~dg~EHlALV~Gdi~~~~~vLV-----RVHSeCltgDvfgS~rCDCg~QL~~AL~~Ia~~G~GVlVYLr~qEGR 434 (564)
+.|+...+ ...++||.|-=..-+|... =+=..|..||||-|-. ..|.-.|++.+. .|.|||+..-|-.
T Consensus 34 vi~~~~~~-~~kV~lisGGGSGHEP~h~G~VG~Gml~aav~G~vFaSPs---~~~i~~ai~~v~-~~~Gvl~iv~NYt-- 106 (568)
T PRK14479 34 VVRRTPTP-EGKVAVVSGGGSGHEPAFAGYVGPGMLDAAVCGNVFTSPS---ADQVYAAIRAAD-GGAGVLLIVGNYA-- 106 (568)
T ss_pred EEEecCCC-CCceEEEecCCccccccccccccCCccceeeccCccCCCC---HHHHHHHHHhcc-CCCCEEEEeCCcH--
Confidence 34444333 4578888875332233110 0224577899998876 689999999886 4569998775333
Q ss_pred CcchhhhhhhhccccCCCCchHhhhhcCCCCCCcChhHHHHHHHHcCCC
Q 008469 435 GIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVR 483 (564)
Q Consensus 435 GiGL~~Kl~AY~Lqd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~ 483 (564)
.|--+|++++++++.-|++
T Consensus 107 ------------------------------GD~lnF~~A~e~a~~~g~~ 125 (568)
T PRK14479 107 ------------------------------GDVMNFGLAAELARAEGID 125 (568)
T ss_pred ------------------------------HHHhhHHHHHHHHHhcCCc
Confidence 3667899999999998885
No 31
>TIGR02362 dhaK1b probable dihydroxyacetone kinase DhaK1b subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form with a phosphoprotein donor related to PTS transport proteins. This family represents a protein, unique to the Firmicutes (low GC Gram-positives), that appears to be a divergent second copy of the K subunit of that complex; its gene is always found in operons with the other three proteins of the complex.
Probab=59.07 E-value=26 Score=37.74 Aligned_cols=88 Identities=24% Similarity=0.394 Sum_probs=59.1
Q ss_pred EEEEecCCCceEEEEEeccCCCCCceeE-----EeccCCcccccccCCCCCChHHHHHHHHHHHHhCCEEEEEEeCCCCC
Q 008469 360 YCYRSILDGIEHIAMVKGDIGDGQDILV-----RVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGR 434 (564)
Q Consensus 360 ~~Yr~~~dg~EHlALV~Gdi~~~~~vLV-----RVHSeCltgDvfgS~rCDCg~QL~~AL~~Ia~~G~GVlVYLr~qEGR 434 (564)
+.|+...+ ...++|+.|-=..-+|.-. =+=+.|..||||-|-. ..|.-.|++.+.. |.|||+..-|-.
T Consensus 32 vv~~~~~~-~~kValIsGGGSGHEPah~GfVG~GmLdAav~G~VFaSPs---~~~I~~ai~av~~-~~GvL~ivkNYt-- 104 (326)
T TIGR02362 32 GIYDSNFD-DQQIPIISGGGSGHEPAHWGYVGEGMLSAAIMGDVFVPPT---AQDILEAIRQVDR-GKGVFVIIKNFE-- 104 (326)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeEeccccCCCC---HHHHHHHHHhhcC-CCCEEEEeccCH--
Confidence 34444333 4678888874322233110 1234577899998876 5899999999764 579998775332
Q ss_pred CcchhhhhhhhccccCCCCchHhhhhcCCCCCCcChhHHHHHHHHcCCCc
Q 008469 435 GIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRT 484 (564)
Q Consensus 435 GiGL~~Kl~AY~Lqd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~~ 484 (564)
.|--+|++|+++++.-|++-
T Consensus 105 ------------------------------GD~lNF~mA~E~a~~eGi~v 124 (326)
T TIGR02362 105 ------------------------------ADLSEFSQAIQQARQEGRQI 124 (326)
T ss_pred ------------------------------HHHhhHHHHHHHHHHcCCcE
Confidence 36678999999999988863
No 32
>PRK14483 DhaKLM operon coactivator DhaQ; Provisional
Probab=56.00 E-value=34 Score=36.95 Aligned_cols=87 Identities=21% Similarity=0.408 Sum_probs=58.2
Q ss_pred EEEEecCCCceEEEEEeccCCCCCceeE-----EeccCCcccccccCCCCCChHHHHHHHHHHHHhCCEEEEEEeCCCCC
Q 008469 360 YCYRSILDGIEHIAMVKGDIGDGQDILV-----RVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGR 434 (564)
Q Consensus 360 ~~Yr~~~dg~EHlALV~Gdi~~~~~vLV-----RVHSeCltgDvfgS~rCDCg~QL~~AL~~Ia~~G~GVlVYLr~qEGR 434 (564)
+.|+.... ...++|+.|-=..-+|... =+=+.|..||||-|-. ..|.-.|++.+.. |.|||+..-|-.
T Consensus 34 vv~~~~~~-~~kV~lIsGGGSGHEPah~GyVG~GmLdAav~G~VFaSPs---~~qI~~ai~av~~-~~GvL~ivkNYt-- 106 (329)
T PRK14483 34 YVYDIEKD-DQLVPIISGGGSGHEPAHIGYVGKGMLTAAVNGSIFTPPT---AEQILAATRLVPK-GKGVFFIIKNFE-- 106 (329)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeEeccccCCCC---HHHHHHHHHhhcC-CCCEEEEecccH--
Confidence 34554433 4678998875322233110 1234578899998876 6899999988764 569998775333
Q ss_pred CcchhhhhhhhccccCCCCchHhhhhcCCCCCCcChhHHHHHHHHcCCC
Q 008469 435 GIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVR 483 (564)
Q Consensus 435 GiGL~~Kl~AY~Lqd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~ 483 (564)
.|--+|++++++++.-|++
T Consensus 107 ------------------------------GDvlnF~mA~E~a~~eGi~ 125 (329)
T PRK14483 107 ------------------------------ADVAEFSAAIQIARQEGRQ 125 (329)
T ss_pred ------------------------------HHhhhHHHHHHHHHhCCCc
Confidence 3566788888888888886
No 33
>PTZ00375 dihydroxyacetone kinase-like protein; Provisional
Probab=52.45 E-value=36 Score=39.40 Aligned_cols=87 Identities=16% Similarity=0.302 Sum_probs=58.2
Q ss_pred EEEEecCCCceEEEEEeccCCCCCceeE-----EeccCCcccccccCCCCCChHHHHHHHHHHHHhCCEEEEEEeCCCCC
Q 008469 360 YCYRSILDGIEHIAMVKGDIGDGQDILV-----RVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGR 434 (564)
Q Consensus 360 ~~Yr~~~dg~EHlALV~Gdi~~~~~vLV-----RVHSeCltgDvfgS~rCDCg~QL~~AL~~Ia~~G~GVlVYLr~qEGR 434 (564)
++|+...+ ...++||.|-=..-+|... =+=+.+..||||-|-. ..|.-.|++... .|.|||+..-|-.
T Consensus 37 vv~~~~~~-~~kV~lisGGGSGHEPah~G~VG~Gml~aav~G~vFaSPs---~~qi~~ai~~v~-~~~Gvl~ivkNYt-- 109 (584)
T PTZ00375 37 VVVRSDID-KTKVLLISGGGSGHEPAHAGFVGKGWLTAAVCGSVFASPS---TKHVLAAIEYVP-NGPGCLLIVKNYT-- 109 (584)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeecccccCCCC---HHHHHHHHHHhc-CCCCEEEEecccH--
Confidence 44554433 4678888875332233110 0224477799998876 689999999776 5569998876333
Q ss_pred CcchhhhhhhhccccCCCCchHhhhhcCCCCCCcChhHHHHHHHHcCCC
Q 008469 435 GIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVR 483 (564)
Q Consensus 435 GiGL~~Kl~AY~Lqd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~ 483 (564)
.|--+||+++++++.-|++
T Consensus 110 ------------------------------GD~lnF~lA~e~a~~eGi~ 128 (584)
T PTZ00375 110 ------------------------------GDILNFELAVEQARARGIQ 128 (584)
T ss_pred ------------------------------HHHhhHHHHHHHHHhCCCc
Confidence 3667788888888888885
No 34
>PF02733 Dak1: Dak1 domain; InterPro: IPR004006 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the kinase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 1UN8_A 1UN9_B 3PNM_A 1UOD_B 3PNO_D 3PNK_A 3PNQ_B 1OI2_B 1OI3_A 3PNL_A ....
Probab=51.50 E-value=11 Score=40.45 Aligned_cols=86 Identities=26% Similarity=0.541 Sum_probs=51.4
Q ss_pred EEEecCCCceEEEEEeccCCCCCce---eE--EeccCCcccccccCCCCCChHHHHHHHHHHHHhCCEEEEEEeCCCCCC
Q 008469 361 CYRSILDGIEHIAMVKGDIGDGQDI---LV--RVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRG 435 (564)
Q Consensus 361 ~Yr~~~dg~EHlALV~Gdi~~~~~v---LV--RVHSeCltgDvfgS~rCDCg~QL~~AL~~Ia~~G~GVlVYLr~qEGRG 435 (564)
+|+... ....++|+.|-=..-+|. .| =+=+.|..||||-|-. ..|.-.|++.+ ..+.|||+.+-|-.|
T Consensus 20 v~~~~~-~~~kV~lIsGGGSGHEP~~~GfVG~GmLdAav~G~VFaSPs---~~qI~~ai~~~-~~~~Gvl~iv~NYtG-- 92 (325)
T PF02733_consen 20 VYRKDI-PKDKVALISGGGSGHEPAHAGFVGKGMLDAAVCGDVFASPS---ADQILAAIKAV-DSGKGVLLIVKNYTG-- 92 (325)
T ss_dssp EEETT---TTS-EEEEEEEESSTTTTGGGBSCTSBSEEEEEEETS------HHHHHHHHHHH--SSS-EEEEEESSHH--
T ss_pred EEeCCC-CCCCEEEEecCCCCcccchhhhccCCccceEeeCCCcCCCC---HHHHHHHHHhc-cCCCCEEEEEecchH--
Confidence 444433 556788887642222231 11 1234577899998876 68999999998 567799988764332
Q ss_pred cchhhhhhhhccccCCCCchHhhhhcCCCCCCcChhHHHHHHHHcCCC
Q 008469 436 IGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVR 483 (564)
Q Consensus 436 iGL~~Kl~AY~Lqd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~ 483 (564)
|--+||+|+++++.-|++
T Consensus 93 ------------------------------D~lNF~~A~E~a~~~Gi~ 110 (325)
T PF02733_consen 93 ------------------------------DVLNFGMAAEKARAEGIK 110 (325)
T ss_dssp ------------------------------HHHHHHHHHHHHHHTT--
T ss_pred ------------------------------HHhhHHHHHHHHHhCCCC
Confidence 455799999999999985
No 35
>PF06794 UPF0270: Uncharacterised protein family (UPF0270); InterPro: IPR010648 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 1Y0N_A.
Probab=46.21 E-value=25 Score=29.86 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=18.7
Q ss_pred CHHHHHHHHHcCCEEEEEeCCC
Q 008469 139 SIPEAIEDIRQGKFVVVVDDED 160 (564)
Q Consensus 139 ~Ve~AI~aLr~G~~VvV~Dded 160 (564)
.|++...+|++|+.||++|.+.
T Consensus 38 kv~qv~~qL~~G~avI~~se~~ 59 (70)
T PF06794_consen 38 KVEQVKQQLKSGEAVIVFSELH 59 (70)
T ss_dssp HHHHHHHHHHTTSEEEEE-TTT
T ss_pred HHHHHHHHHHcCCEEEEECCcc
Confidence 5899999999999999999753
No 36
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=46.02 E-value=70 Score=34.15 Aligned_cols=92 Identities=18% Similarity=0.270 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHcCCEEEEEeCCC-CCCcccE--EEEcCCCCHHHHHHHHHhCCceEEEecChhhhhhcCCccccccccCc
Q 008469 138 SSIPEAIEDIRQGKFVVVVDDED-RENEGDL--IMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKEND 214 (564)
Q Consensus 138 ~~Ve~AI~aLr~G~~VvV~Dded-REnEgdL--V~AAe~~T~e~iaFm~r~~~Glicvam~~e~~~rL~Lp~M~~~~~n~ 214 (564)
..|...|++||+|+.|-+.-|.| ..+++-. .|+-+..|+-.++.|++.++--| +|..... |.
T Consensus 182 ~~ir~li~~Lk~G~~v~~lpDqd~~~~~~vfvpFFg~~a~T~t~~~~LA~~~~a~v-------------ip~~~~r--~~ 246 (308)
T COG1560 182 EGIRQLIKALKQGEAVGYLPDQDYGPGESVFVPFFGVPAATTTGPAKLARLTGAAV-------------VPVFPVR--NP 246 (308)
T ss_pred hhHHHHHHHHhcCCeEEEecCcccCCCCCeEeccCCCcccccchHHHHHHHhCCCE-------------EEEEEEE--eC
Confidence 57999999999999996666666 4444422 46778889999999998865322 2333222 22
Q ss_pred ccCCCceeEeeecCCCCCcCCChhhHHHHHHHHHc
Q 008469 215 EKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLAS 249 (564)
Q Consensus 215 ~~~~taFtVsVDa~~g~tTGISA~DRA~TIraLAd 249 (564)
.+..|++.|.+. .|+-...|=+.+.+.+++
T Consensus 247 --~g~~y~l~i~p~---~~~~~~~D~~~~a~~mn~ 276 (308)
T COG1560 247 --DGSGYTLHIHPP---MTDDPSEDVEADAQRMND 276 (308)
T ss_pred --CCCeEEEEEecc---ccCCCCCCHHHHHHHHHH
Confidence 355689998872 344444555566666655
No 37
>PRK04966 hypothetical protein; Provisional
Probab=43.47 E-value=20 Score=30.65 Aligned_cols=22 Identities=14% Similarity=0.339 Sum_probs=19.7
Q ss_pred CHHHHHHHHHcCCEEEEEeCCC
Q 008469 139 SIPEAIEDIRQGKFVVVVDDED 160 (564)
Q Consensus 139 ~Ve~AI~aLr~G~~VvV~Dded 160 (564)
.|++...+|++|+.||++|.+.
T Consensus 38 kv~qv~~qL~~G~~viv~se~~ 59 (72)
T PRK04966 38 KVADVKRQLQSGEAVLVWSELH 59 (72)
T ss_pred HHHHHHHHHHcCCEEEEECCCC
Confidence 7899999999999999998753
No 38
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=42.84 E-value=6.2 Score=34.72 Aligned_cols=50 Identities=28% Similarity=0.399 Sum_probs=32.1
Q ss_pred HHHHHHcCCCceecccCCCCc-----ccccccCCcEEEEEeeccCCCChhhHHHHHHH
Q 008469 474 AQMLRDLGVRTMKLMTNNPSK-----YVGLKGYGLAVAGRVPLITPIKKENKRYLETK 526 (564)
Q Consensus 474 AQILrdLGV~~IrLLTNNP~K-----~~aL~g~GIeV~ervpl~~~~~~~n~~YL~tK 526 (564)
.+-|++.| +++.++|||+.+ .+-|+..||.+.. .-++.+...-..||+.+
T Consensus 23 l~~L~~~g-~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~--~~i~ts~~~~~~~l~~~ 77 (101)
T PF13344_consen 23 LDALRERG-KPVVFLTNNSSRSREEYAKKLKKLGIPVDE--DEIITSGMAAAEYLKEH 77 (101)
T ss_dssp HHHHHHTT-SEEEEEES-SSS-HHHHHHHHHHTTTT--G--GGEEEHHHHHHHHHHHH
T ss_pred HHHHHHcC-CCEEEEeCCCCCCHHHHHHHHHhcCcCCCc--CEEEChHHHHHHHHHhc
Confidence 34577777 589999999866 4557789998743 22233455667888874
No 39
>KOG2426 consensus Dihydroxyacetone kinase/glycerone kinase [Carbohydrate transport and metabolism]
Probab=39.01 E-value=1.5e+02 Score=33.91 Aligned_cols=99 Identities=19% Similarity=0.355 Sum_probs=68.7
Q ss_pred CCCcEEEEEEEecCCCceEEEEEeccCCCCCceeE-----EeccCCcccccccCCCCCChHHHHHHHHHHHHhCCEEEEE
Q 008469 353 MWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILV-----RVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVY 427 (564)
Q Consensus 353 ~~G~F~~~~Yr~~~dg~EHlALV~Gdi~~~~~vLV-----RVHSeCltgDvfgS~rCDCg~QL~~AL~~Ia~~G~GVlVY 427 (564)
-+-.-+.+.|++......|++|+.|-=..-+|.-- -+=..-+-||||-|.. -.|...|++.++.+ .|.||.
T Consensus 30 ~~~~~r~vl~~~~~~~~~kValiSGGGSGHEPtHAGfVGkGmLtaai~G~iFASPs---tkqI~aairaV~~~-~GtLlI 105 (582)
T KOG2426|consen 30 VHPEDRVVLFRDASAPKPKVALISGGGSGHEPTHAGFVGKGMLTAAIAGDIFASPS---TKQILAAIRAVEGE-AGTLLI 105 (582)
T ss_pred ecccceEEEEeecCCCCCceEEEeCCCCCCCcccccccccchhhhhhhcccccCCc---HHHHHHHHHHhccC-CceEEE
Confidence 34456778888877667899999886444444210 0112345689998876 47999999999544 589888
Q ss_pred EeCCCCCCcchhhhhhhhccccCCCCchHhhhhcCCCCCCcChhHHHHHHHHcCCCceecc
Q 008469 428 LRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLM 488 (564)
Q Consensus 428 Lr~qEGRGiGL~~Kl~AY~Lqd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~~IrLL 488 (564)
..|= -.|--+||+++.--|..|++ ++|.
T Consensus 106 VKNY--------------------------------TGD~LhFGLAaErara~G~~-ve~v 133 (582)
T KOG2426|consen 106 VKNY--------------------------------TGDRLHFGLAAERARAAGIK-VELV 133 (582)
T ss_pred Eecc--------------------------------ccceeehhhhHHHHHhcCCc-eEEE
Confidence 8632 23566899999999999984 4554
No 40
>PRK00304 hypothetical protein; Provisional
Probab=34.67 E-value=43 Score=28.94 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=23.2
Q ss_pred CHHHHHHHHHcCCEEEEEeCCCCCCcccEEEEcC
Q 008469 139 SIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQ 172 (564)
Q Consensus 139 ~Ve~AI~aLr~G~~VvV~DdedREnEgdLV~AAe 172 (564)
.|++...+|++|+.||++|.. .|.-=+++-+
T Consensus 37 kv~qv~~qL~~G~~vIvfse~---~es~~i~~k~ 67 (75)
T PRK00304 37 RVLRVRQALTKGQAVILFDPE---SQQCQLMLKH 67 (75)
T ss_pred HHHHHHHHHHcCCEEEEECCC---cceeeeeeHh
Confidence 688999999999999999874 3444444433
No 41
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=32.89 E-value=88 Score=32.59 Aligned_cols=120 Identities=23% Similarity=0.293 Sum_probs=66.6
Q ss_pred HHHHHHHH---HcCC--EEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCceEEEecChhhhhhcCCccccccccCc
Q 008469 140 IPEAIEDI---RQGK--FVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKEND 214 (564)
Q Consensus 140 Ve~AI~aL---r~G~--~VvV~DdedREnEgdLV~AAe~~T~e~iaFm~r~~~Glicvam~~e~~~rL~Lp~M~~~~~n~ 214 (564)
++.|+++. .+|. -|+| ||++|.=+.-. +.|+.++.|.+- ..+..+.+++|.=+..
T Consensus 28 ie~A~~ea~~l~~~GvDgiiv------eN~~D~Py~~~-~~~etvaaM~~i---------~~~v~~~~~~p~GVnv---- 87 (254)
T PF03437_consen 28 IERAVREAEALEEGGVDGIIV------ENMGDVPYPKR-VGPETVAAMARI---------AREVRREVSVPVGVNV---- 87 (254)
T ss_pred HHHHHHHHHHHHHCCCCEEEE------ecCCCCCccCC-CCHHHHHHHHHH---------HHHHHHhCCCCEEeee----
Confidence 45565544 3444 3444 57889888766 999999999875 2333344444421111
Q ss_pred ccCCCceeEeeecCCCCCcCCChhhHHHHHHHHHcCCCCCCCCCC-CCccceeeeccCCcccccchhHHHHHHHHHcCCC
Q 008469 215 EKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNR-PGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFD 293 (564)
Q Consensus 215 ~~~~taFtVsVDa~~g~tTGISA~DRA~TIraLAd~~s~p~Df~r-PGHVfPL~a~~gGvl~R~GhTEAAVdLarlAGl~ 293 (564)
++-|. ..+|+=..+.-.||.| ..+++-....+ |+++. .....+.+-+..|..
T Consensus 88 --------L~nd~----------------~aalaiA~A~ga~FIRv~~~~g~~~~d~-G~~~~--~a~e~~r~R~~l~a~ 140 (254)
T PF03437_consen 88 --------LRNDP----------------KAALAIAAATGADFIRVNVFVGAYVTDE-GIIEG--CAGELLRYRKRLGAD 140 (254)
T ss_pred --------ecCCC----------------HHHHHHHHHhCCCEEEecCEEceecccC-ccccc--cHHHHHHHHHHcCCC
Confidence 11111 1122222233469999 88887666554 44332 222344444555667
Q ss_pred ceEEEEEEeCCCCC
Q 008469 294 PAAVLCEVVDDDGS 307 (564)
Q Consensus 294 PaaVicEiv~~dG~ 307 (564)
+.+++.+-...+.
T Consensus 141 -v~ilaDV~~kh~~ 153 (254)
T PF03437_consen 141 -VKILADVHVKHSS 153 (254)
T ss_pred -eEEEeeechhhcc
Confidence 8888887665443
No 42
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=32.69 E-value=1.8e+02 Score=33.50 Aligned_cols=114 Identities=21% Similarity=0.266 Sum_probs=71.6
Q ss_pred EEEEcCCCCHHHHHHHHHhCCceEEEe--cC---hhhhhhcCCccccccccCcccCCCceeEeeecCCC-CCcCCC----
Q 008469 167 LIMAAQLATPEAMAFIVKHGTGIVCVS--MK---GEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHG-TTTGVS---- 236 (564)
Q Consensus 167 LV~AAe~~T~e~iaFm~r~~~Glicva--m~---~e~~~rL~Lp~M~~~~~n~~~~~taFtVsVDa~~g-~tTGIS---- 236 (564)
.|+-++..+|+.+..|. .+.|+|+-- ++ .-.++.|++|.++............-.|+||...| +.-|.-
T Consensus 382 ~ILV~~~t~P~~~~~~~-~a~GIVte~Gg~tSHaAivARelgiP~VvG~~~~~~~~~~G~~VtvDg~~G~V~~G~~~~~~ 460 (530)
T PRK05878 382 VILVRDHTRPDDVHGML-AAQGIVTEVGGATSHAAVVSRELGRVAVVGCGAGVAAALAGKEITVDGYEGEVRQGVLALSA 460 (530)
T ss_pred EEEEECCCCHHHHhhhH-hheEEEEccCCccchHHHHHHHcCCCEEEcccchhhccCCCCEEEEECCCCEEEeCcccCcC
Confidence 55667788999999995 588988865 11 44799999999987532333344578999998655 233322
Q ss_pred ----hhhHHHHHHHHHcCCCCCCCCCCCCccceeeeccCCcccc-cchhHHHHHHHHHcCCC
Q 008469 237 ----ARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKR-AGHTEASVDLAVLAGFD 293 (564)
Q Consensus 237 ----A~DRA~TIraLAd~~s~p~Df~rPGHVfPL~a~~gGvl~R-~GhTEAAVdLarlAGl~ 293 (564)
.....++++.+|+. |-||..+...=-.+ ..-.+++|+.|-.||..
T Consensus 461 ~~~~~~~~~~~l~~~ad~------------i~~L~l~~n~d~~~~~~~~~~~~~~~~~~~~~ 510 (530)
T PRK05878 461 WSESDTPELRELADIAQR------------ISPLRAHASGDYPRLDDDSDDAVRAALAAGHA 510 (530)
T ss_pred ccccCCHHHHHHHHHHHH------------cCCCeeEeCCCCCCCCCccchhHHHHHhcccc
Confidence 12356788888874 33444333221112 11345778877777764
No 43
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=32.26 E-value=27 Score=31.31 Aligned_cols=36 Identities=17% Similarity=0.355 Sum_probs=28.5
Q ss_pred HHH-HHcCCCcee--cccCCCCcccccccCCcEEEEEee
Q 008469 475 QML-RDLGVRTMK--LMTNNPSKYVGLKGYGLAVAGRVP 510 (564)
Q Consensus 475 QIL-rdLGV~~Ir--LLTNNP~K~~aL~g~GIeV~ervp 510 (564)
+++ +.+|+++|. ++.+|+.-++..+..|.+++++.+
T Consensus 103 ~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~~ 141 (155)
T PF13420_consen 103 EYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGELK 141 (155)
T ss_dssp HHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEEEE
T ss_pred HHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEEEe
Confidence 445 889999987 578888888888999999998877
No 44
>PRK08296 hypothetical protein; Provisional
Probab=31.86 E-value=52 Score=38.26 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=53.8
Q ss_pred cCCEEEEEeCCC-CC-CcccEEEEcCCCCHHHHHHHHHhCCceEEEecC-----hhhhhhcCCccccccccCcccCCCce
Q 008469 149 QGKFVVVVDDED-RE-NEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMK-----GEDLERLDLPLMVAQKENDEKLCTAF 221 (564)
Q Consensus 149 ~G~~VvV~Dded-RE-nEgdLV~AAe~~T~e~iaFm~r~~~Glicvam~-----~e~~~rL~Lp~M~~~~~n~~~~~taF 221 (564)
.|+..||.+.++ .+ .+|+ |+-++..+|..+..| ....|+|+-.=. .-.++.+|+|.++..........+..
T Consensus 511 ~G~vrvv~~~~~~~~~~~g~-ILV~~~tdP~~~~~~-~~~~GiVte~Gg~~SHaAIvARe~GIPaVvgv~~at~~l~dG~ 588 (603)
T PRK08296 511 EGPARVIRSADELSEVQEGE-ILVCPVTSPSWAPIF-AKIKATVTDIGGVMSHAAIVCREYGLPAVVGTGNATKRIKTGQ 588 (603)
T ss_pred EEEEEEeCCHHHHHhccCce-EEEeCCCCHHHHHHH-HHheEEEEecCCCcchHHHHHHHcCCCEEEcCccHhhhcCCCC
Confidence 455555555433 22 3444 555677788888777 668898886521 44789999999887633334456788
Q ss_pred eEeeecCCCC
Q 008469 222 TVTVDAKHGT 231 (564)
Q Consensus 222 tVsVDa~~g~ 231 (564)
.|+||...|+
T Consensus 589 ~V~vDg~~G~ 598 (603)
T PRK08296 589 RLRVDGTKGV 598 (603)
T ss_pred EEEEECCCCE
Confidence 9999987664
No 45
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=30.56 E-value=42 Score=26.55 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=13.6
Q ss_pred hHHHHHHHhcCCceEeehhH
Q 008469 312 PKLREFAKRENLKIISIADL 331 (564)
Q Consensus 312 ~~l~~fA~~h~L~ivsi~DL 331 (564)
..+.+||+++++|++..+|-
T Consensus 5 ~~A~~~A~~~~lp~~~gSDA 24 (56)
T PF13263_consen 5 RRAAELAEKYGLPFTGGSDA 24 (56)
T ss_dssp -HHHHHHHHTT--EEEE--B
T ss_pred HHHHHHHHHcCCCeEeEEcc
Confidence 46799999999999999993
No 46
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=29.97 E-value=40 Score=28.39 Aligned_cols=67 Identities=22% Similarity=0.243 Sum_probs=43.2
Q ss_pred CcccEEEEcCCCCHHHHHHHHHhCCceEEEecC-----hhhhhhcCCccccccccCcccCCCceeEeeecCC
Q 008469 163 NEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMK-----GEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKH 229 (564)
Q Consensus 163 nEgdLV~AAe~~T~e~iaFm~r~~~Glicvam~-----~e~~~rL~Lp~M~~~~~n~~~~~taFtVsVDa~~ 229 (564)
.+.+.|+-++..+|..+.+......|+|+-.=. .=.++.|++|..+............-.|+||...
T Consensus 8 ~~~~~IlV~~~~~p~~~~~~~~~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~~~~~~~i~~g~~v~lDg~~ 79 (80)
T PF00391_consen 8 LPEGVILVAEELTPSDLALDLQRVAGIVTEEGGPTSHAAILARELGIPAIVGVGDATEAIKDGDWVTLDGNS 79 (80)
T ss_dssp TTSTEEEEESS--TTCHHSHHTTSSEEEESSSSTTSHHHHHHHHTT-EEEESTTTHHHHSCTTEEEEEETTT
T ss_pred CCCCEEEEECCCCHHHHhcchhheEEEEEEcCCccchHHHHHHHcCCCEEEeeccHhhccCCCCEEEEECCC
Confidence 345667777778888888556667999886522 4568899999988763223334456678888753
No 47
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=28.33 E-value=1e+02 Score=32.96 Aligned_cols=136 Identities=17% Similarity=0.199 Sum_probs=82.6
Q ss_pred HHHHHHHHcC--CCceEEEEEEeCCC--CCcCChhHHHHHHHhcCCceEeehhHHHH-----Hhhc--cccccccccccc
Q 008469 282 ASVDLAVLAG--FDPAAVLCEVVDDD--GSMARLPKLREFAKRENLKIISIADLIRY-----RRKR--DKLVDRSSAARI 350 (564)
Q Consensus 282 AAVdLarlAG--l~PaaVicEiv~~d--G~mar~~~l~~fA~~h~L~ivsi~DLi~y-----r~~~--e~lVer~~~~~l 350 (564)
|+.-|-.|.+ ..-++|+..-=... |.-......+++|.+||||+..-+.|..- .+.- +-.|.-.--.-|
T Consensus 13 a~~~L~~L~~~~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP~~l~~~e~~~~l~~l~~D~ivvvayG~il 92 (307)
T COG0223 13 AVPSLEALIEAGHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQPEKLNDPEFLEELAALDPDLIVVVAYGQIL 92 (307)
T ss_pred hHHHHHHHHhCCCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceeccccCCcHHHHHHHhccCCCEEEEEehhhhC
Confidence 4455555554 55566655422222 34556688999999999999988766521 1111 111100000111
Q ss_pred c------CCCCcEEEEE-----EEecCCCceEEEEEeccCCCCCceeEEeccCCcccccccCCCCC-----ChHHHHHHH
Q 008469 351 P------TMWGPFTAYC-----YRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCD-----CGDQLALAM 414 (564)
Q Consensus 351 p------T~~G~F~~~~-----Yr~~~dg~EHlALV~Gdi~~~~~vLVRVHSeCltgDvfgS~rCD-----Cg~QL~~AL 414 (564)
| .+||-+.+|. ||. -.--|.||+.||-..+ .++-++..+--+||++...+|. ....|+..|
T Consensus 93 p~~iL~~~~~G~iNvH~SLLPr~RG--aAPIq~aI~~Gd~~TG-vTim~M~~~lDaG~Il~q~~~~I~~~dta~~L~~kL 169 (307)
T COG0223 93 PKEILDLPPYGCINLHPSLLPRYRG--AAPIQWAILNGDTETG-VTIMQMDEGLDAGDILAQREVPIEPDDTAGSLHDKL 169 (307)
T ss_pred CHHHHhcCcCCeEEecCccCccccC--ccHHHHHHHcCCcccc-eEEEEccccCCCcceeeeEEeccCCcccHHHHHHHH
Confidence 1 1467777776 442 2235788999987655 4788999999999999988864 445677766
Q ss_pred HHHHHh
Q 008469 415 QQIEAA 420 (564)
Q Consensus 415 ~~Ia~~ 420 (564)
..++.+
T Consensus 170 a~~ga~ 175 (307)
T COG0223 170 AELGAE 175 (307)
T ss_pred HHHHHH
Confidence 665554
No 48
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=28.06 E-value=2.2e+02 Score=30.70 Aligned_cols=95 Identities=24% Similarity=0.448 Sum_probs=59.5
Q ss_pred cCCEEEEEeCCC-CCCcccEEEEcCCCCHHHHHHHHHhCCceEEEecChhhhhhcCCccccccccCcccCCCceeEeeec
Q 008469 149 QGKFVVVVDDED-RENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDA 227 (564)
Q Consensus 149 ~G~~VvV~Dded-REnEgdLV~AAe~~T~e~iaFm~r~~~Glicvam~~e~~~rL~Lp~M~~~~~n~~~~~taFtVsVDa 227 (564)
.|+||+|+--+. |+.-.-|-=--....||-....+|. -+.+++++||.+.- ||-
T Consensus 105 ~G~pv~vIG~qKG~dtk~~~~rNFGm~~PeGyRKAlRl----------m~~AekF~lPiitf---------------IDT 159 (317)
T COG0825 105 GGQPVVVIGHQKGRDTKEKLKRNFGMPRPEGYRKALRL----------MKLAEKFGLPIITF---------------IDT 159 (317)
T ss_pred CCeeEEEEeeecCccchhHHHhcCCCCCchHHHHHHHH----------HHHHHHhCCCEEEE---------------ecC
Confidence 699999986654 3222212112334567777777765 57789999987643 233
Q ss_pred CCCCCcCCChhhHHHHHHHHHcCCCCCCCCCCCCccceeeeccCCcccccchhHH-HHHHHHHcCCCceEEEEEEeCCCC
Q 008469 228 KHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEA-SVDLAVLAGFDPAAVLCEVVDDDG 306 (564)
Q Consensus 228 ~~g~tTGISA~DRA~TIraLAd~~s~p~Df~rPGHVfPL~a~~gGvl~R~GhTEA-AVdLarlAGl~PaaVicEiv~~dG 306 (564)
. |...||-|.+ .|..|| |--|.+|++|. +=+||-++.+.|
T Consensus 160 ~-GAypG~~AEE-------------------------------------rGQ~eAIA~nL~em~~Lk-vPiI~iVIGEGg 200 (317)
T COG0825 160 P-GAYPGIGAEE-------------------------------------RGQSEAIARNLREMARLK-VPIISIVIGEGG 200 (317)
T ss_pred C-CCCCCcchhh-------------------------------------cccHHHHHHHHHHHhCCC-CCEEEEEecCCC
Confidence 2 4444554444 466676 67788888875 667888888754
Q ss_pred C
Q 008469 307 S 307 (564)
Q Consensus 307 ~ 307 (564)
+
T Consensus 201 S 201 (317)
T COG0825 201 S 201 (317)
T ss_pred c
Confidence 3
No 49
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=27.68 E-value=1.4e+02 Score=30.66 Aligned_cols=58 Identities=26% Similarity=0.427 Sum_probs=41.8
Q ss_pred HHHHHHHHHc--------CCEEEEEeCCC-------------CC-CcccEEEEcCCCCHHHHHHHHHhCCceEEEecChh
Q 008469 140 IPEAIEDIRQ--------GKFVVVVDDED-------------RE-NEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGE 197 (564)
Q Consensus 140 Ve~AI~aLr~--------G~~VvV~Dded-------------RE-nEgdLV~AAe~~T~e~iaFm~r~~~Glicvam~~e 197 (564)
+++-+.++|. |+-|||+||-- |- .-.++++|.--+.++...-+.+++.+++|+.||..
T Consensus 106 l~rrr~~yr~~~~~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVPV~p~~a~~~l~s~~D~vvc~~~P~~ 185 (220)
T COG1926 106 LLRRREAYRGGRPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVPVAPEDAAAELESEADEVVCLYMPAP 185 (220)
T ss_pred HHHHHHHHcCCCCCCCCCCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEcccCCHHHHHHHHhhcCeEEEEcCCcc
Confidence 4444555554 45789999832 11 12468888888888888899999999999998854
No 50
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=27.41 E-value=1.4e+02 Score=27.32 Aligned_cols=51 Identities=14% Similarity=0.264 Sum_probs=39.8
Q ss_pred cchhHHHHHHHHHcCCCceEEEEEEeCCCCCcCChhHHHHHHHhcCCceEee
Q 008469 277 AGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISI 328 (564)
Q Consensus 277 ~GhTEAAVdLarlAGl~PaaVicEiv~~dG~mar~~~l~~fA~~h~L~ivsi 328 (564)
-.|+...+..++..|+...+++....+++-.+ .....+.+++..++|++-+
T Consensus 82 i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~-~~~~~~~i~~~~gip~LG~ 132 (134)
T cd03109 82 INHAFLTIEAARIKGIILNGVLGNVIVEKEGL-ATLNVETIERLTGIPVLGI 132 (134)
T ss_pred HhHHHHHHHHHHhcCCceeEEEEccCCCccch-hhhhHHHHHHhcCCCEEEe
Confidence 56888999999999999999999877763222 2246788899999998753
No 51
>PLN02398 hydroxyacylglutathione hydrolase
Probab=26.97 E-value=8.3e+02 Score=26.39 Aligned_cols=140 Identities=17% Similarity=0.116 Sum_probs=76.3
Q ss_pred ccccchhHHHHHHHHHcCCCceEEEEEEeCCCCCcCChhHHHHHHHhcCCceEeehhHHHHHhhccccccccccccccCC
Q 008469 274 LKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTM 353 (564)
Q Consensus 274 l~R~GhTEAAVdLarlAGl~PaaVicEiv~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e~lVer~~~~~lpT~ 353 (564)
+.-+|..+.-++..+-.|+...+|++.=...|- ..-+.+|.++++.+++.-..-..+....+..++ ... ...
T Consensus 102 vVDP~~a~~vl~~l~~~g~~L~~ILlTH~H~DH----~GG~~~L~~~~ga~V~g~~~~~~~i~~~d~~v~---dGd-~i~ 173 (329)
T PLN02398 102 VVDPSEAVPVIDALSRKNRNLTYILNTHHHYDH----TGGNLELKARYGAKVIGSAVDKDRIPGIDIVLK---DGD-KWM 173 (329)
T ss_pred EEcCCCHHHHHHHHHhcCCCceEEEECCCCchh----hCCHHHHHHhcCCEEEEehHHhhhccCCcEEeC---CCC-EEE
Confidence 444566666666667778888887775444441 112345677778888765432221111111111 110 111
Q ss_pred CCcEEEEEEEecCCCceEEEEEeccCCCCCceeEEeccCCcccccccCCCCC-----ChHHHHHHHHHHHHhCCEEEEEE
Q 008469 354 WGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCD-----CGDQLALAMQQIEAAGRGVLVYL 428 (564)
Q Consensus 354 ~G~F~~~~Yr~~~dg~EHlALV~Gdi~~~~~vLVRVHSeCltgDvfgS~rCD-----Cg~QL~~AL~~Ia~~G~GVlVYL 428 (564)
.|.+++.++...-....|+++...+ .. ..++||.+-+..|. ...|+.++|+.|.+-..-.+||-
T Consensus 174 lgg~~l~vi~tPGHT~GhI~~~~~~----~~-------vLFtGDtLf~~g~Gr~feg~~~~~~~SL~rL~~L~~~t~Vyp 242 (329)
T PLN02398 174 FAGHEVLVMETPGHTRGHISFYFPG----SG-------AIFTGDTLFSLSCGKLFEGTPEQMLSSLQKIISLPDDTNIYC 242 (329)
T ss_pred ECCeEEEEEeCCCcCCCCEEEEECC----CC-------EEEECCCcCCCCcCCCCCCCHHHHHHHHHHHHcCCCCeEEEC
Confidence 2444444444333334677775421 11 25679977665552 23688999999987665677775
Q ss_pred eCCCC
Q 008469 429 RGHEG 433 (564)
Q Consensus 429 r~qEG 433 (564)
+||.
T Consensus 243 -GHgy 246 (329)
T PLN02398 243 -GHEY 246 (329)
T ss_pred -CCCC
Confidence 5764
No 52
>PLN02880 tyrosine decarboxylase
Probab=26.70 E-value=1.2e+02 Score=34.20 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=42.0
Q ss_pred cccchhHHHHHHHHHcCCCceEEEEEEeCC-CCCcCChhHHHHHHHhcCCce
Q 008469 275 KRAGHTEASVDLAVLAGFDPAAVLCEVVDD-DGSMARLPKLREFAKRENLKI 325 (564)
Q Consensus 275 ~R~GhTEAAVdLarlAGl~PaaVicEiv~~-dG~mar~~~l~~fA~~h~L~i 325 (564)
-+...-|.+++-.+.+|+.|.+|++..=.- -|..-..+++.++|++||+.+
T Consensus 221 md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwl 272 (490)
T PLN02880 221 LAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWF 272 (490)
T ss_pred CCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEE
Confidence 345566778887888999999999987654 488889999999999999875
No 53
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.49 E-value=54 Score=33.72 Aligned_cols=61 Identities=16% Similarity=0.076 Sum_probs=43.9
Q ss_pred hHHHHHHHHcCCCceecccCCCC-----cccccccCCcEEEEEeeccCCCChh------hHHHHHHHHHhcC
Q 008469 471 GIGAQMLRDLGVRTMKLMTNNPS-----KYVGLKGYGLAVAGRVPLITPIKKE------NKRYLETKRAKMG 531 (564)
Q Consensus 471 gigAQILrdLGV~~IrLLTNNP~-----K~~aL~g~GIeV~ervpl~~~~~~~------n~~YL~tK~~k~g 531 (564)
+...+-|+.||+++|.++|-.-+ -...|+..|++|+....+.+..|.+ ..-|=-+|+..-+
T Consensus 107 ~Avv~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~~~ 178 (238)
T COG3473 107 TAVVEALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVFTP 178 (238)
T ss_pred HHHHHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCCcccchhcccChHHHHHHHHHhcCC
Confidence 34556699999999999984322 2456788999999999887765543 3556667776533
No 54
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=24.10 E-value=46 Score=35.34 Aligned_cols=39 Identities=23% Similarity=0.442 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCCceecccCCCCcccccccCCcEEEEEee
Q 008469 472 IGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVP 510 (564)
Q Consensus 472 igAQILrdLGV~~IrLLTNNP~K~~aL~g~GIeV~ervp 510 (564)
-..+.|+..||++|||..-+|.=+.++++-||+|.--||
T Consensus 17 ~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vp 55 (310)
T PF00332_consen 17 KVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVP 55 (310)
T ss_dssp HHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-
T ss_pred HHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccC
Confidence 456789999999999999999999999999999998888
No 55
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=23.62 E-value=29 Score=35.08 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=33.6
Q ss_pred CCCCCCCCHHHHHHHHHcCCEEEEEeCCCCCCcccEEEE--cCCCCHHHHH
Q 008469 132 SPTEGFSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMA--AQLATPEAMA 180 (564)
Q Consensus 132 ~p~~~~~~Ve~AI~aLr~G~~VvV~DdedREnEgdLV~A--Ae~~T~e~ia 180 (564)
.|..+|-++++|++..++|-.|.=+-+.|...|.|+|+| .+..|-|.++
T Consensus 2 qp~pqwls~eeA~~hc~~G~~iW~wAS~d~g~ePDVVlA~aGd~pT~E~lA 52 (203)
T PF09363_consen 2 QPRPQWLSMEEARAHCAAGAGIWDWASTDQGEEPDVVLACAGDVPTLEVLA 52 (203)
T ss_dssp SEEEE-S-HHHHHHHHHHSEEE-CCC-SSSTTT-SEEEEEESHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHcCCeEEEeccCCCCCCCCEEEEecCchhhHHHHH
Confidence 467788899999999999998885555555678999888 3444667666
No 56
>PRK06354 pyruvate kinase; Provisional
Probab=23.45 E-value=1.6e+02 Score=34.21 Aligned_cols=82 Identities=20% Similarity=0.235 Sum_probs=53.9
Q ss_pred cCCEEEEEeCCC-CCCcccEEEEcCCCCHHHHHHHHHhCCceEEEecC-----hhhhhhcCCccccccccCcccCCCcee
Q 008469 149 QGKFVVVVDDED-RENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMK-----GEDLERLDLPLMVAQKENDEKLCTAFT 222 (564)
Q Consensus 149 ~G~~VvV~Dded-REnEgdLV~AAe~~T~e~iaFm~r~~~Glicvam~-----~e~~~rL~Lp~M~~~~~n~~~~~taFt 222 (564)
.|..+++.+.++ .+-+..-|+-++..+|+.+..| +...|+|+-.=. .-.++.|++|.++....-.+.......
T Consensus 494 ~G~v~~~~~~~~~~~~~~~~ILV~~~~~P~~~~~~-~~~~GiVt~~Gg~tSH~AIvAR~lgIPaVvg~~~~~~~l~~G~~ 572 (590)
T PRK06354 494 SGKARVAKTAAEVAKVNEGDILVTPSTDADMIPAI-EKAAAIITEEGGLTSHAAVVGLRLGIPVIVGVKNATSLIKDGQI 572 (590)
T ss_pred cceEEEeCChHhhccCCCCeEEEeCCCCHHHHHhH-HhcEEEEEecCCCcchHHHHHHhcCCCEEEeccchhhccCCCCE
Confidence 465555544433 1222334556677899888775 888999987522 447899999999875322344456788
Q ss_pred EeeecCCCC
Q 008469 223 VTVDAKHGT 231 (564)
Q Consensus 223 VsVDa~~g~ 231 (564)
|+||...|.
T Consensus 573 v~vDg~~G~ 581 (590)
T PRK06354 573 ITVDAARGV 581 (590)
T ss_pred EEEECCCCE
Confidence 999987653
No 57
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=22.92 E-value=54 Score=33.58 Aligned_cols=41 Identities=22% Similarity=0.202 Sum_probs=31.6
Q ss_pred HHHHHHHcCCCceecccCCCCccc-----ccccCCcEEEEEeeccC
Q 008469 473 GAQMLRDLGVRTMKLMTNNPSKYV-----GLKGYGLAVAGRVPLIT 513 (564)
Q Consensus 473 gAQILrdLGV~~IrLLTNNP~K~~-----aL~g~GIeV~ervpl~~ 513 (564)
...-|++||+++|-|+|=.+.-++ .|+..|++|+....+..
T Consensus 111 ~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~ 156 (239)
T TIGR02990 111 AVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGL 156 (239)
T ss_pred HHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCC
Confidence 345699999999999997665543 46789999988766544
No 58
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=22.88 E-value=63 Score=26.88 Aligned_cols=23 Identities=35% Similarity=0.673 Sum_probs=17.0
Q ss_pred CCCCHHHHHHHHHcCCEEEEEeCC
Q 008469 136 GFSSIPEAIEDIRQGKFVVVVDDE 159 (564)
Q Consensus 136 ~~~~Ve~AI~aLr~G~~VvV~Dde 159 (564)
.|+.++++.++|++|++|++ |=+
T Consensus 8 ~~~D~~~i~~~l~~g~~Viv-nl~ 30 (73)
T PF04472_consen 8 SFEDAREIVDALREGKIVIV-NLE 30 (73)
T ss_dssp SGGGHHHHHHHHHTT--EEE-E-T
T ss_pred CHHHHHHHHHHHHcCCEEEE-ECC
Confidence 56789999999999999977 543
No 59
>PLN02590 probable tyrosine decarboxylase
Probab=21.24 E-value=1.8e+02 Score=33.45 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=36.8
Q ss_pred ccchhHHHHHHHHHcCCCceEEEEEEeCC-CCCcCChhHHHHHHHhcCCc
Q 008469 276 RAGHTEASVDLAVLAGFDPAAVLCEVVDD-DGSMARLPKLREFAKRENLK 324 (564)
Q Consensus 276 R~GhTEAAVdLarlAGl~PaaVicEiv~~-dG~mar~~~l~~fA~~h~L~ 324 (564)
+...-|++++-.+.+|+.|.+|++..=.- -|..-+.+++.++|++|++-
T Consensus 270 d~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~W 319 (539)
T PLN02590 270 PPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIW 319 (539)
T ss_pred CHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCe
Confidence 44456677777778888888888877554 37777888888888888874
No 60
>COG1901 Uncharacterized conserved protein [Function unknown]
Probab=21.19 E-value=3.8e+02 Score=27.20 Aligned_cols=67 Identities=12% Similarity=0.245 Sum_probs=48.7
Q ss_pred CcccCCccCCCCCCCCCCCCCCCCCHHHHHHHHHcCCEEEEEeCCCCC-------CcccEEEE-cCCCCHHHHHHHHHhC
Q 008469 115 APTTFGFSSDDDEFDLDSPTEGFSSIPEAIEDIRQGKFVVVVDDEDRE-------NEGDLIMA-AQLATPEAMAFIVKHG 186 (564)
Q Consensus 115 ~~~~~~f~~~~~~~~~~~p~~~~~~Ve~AI~aLr~G~~VvV~DdedRE-------nEgdLV~A-Ae~~T~e~iaFm~r~~ 186 (564)
-+.++|++|++. ..|..++.++.|++++..+...++ +-.-+|+- =.-.|.|...+|.+++
T Consensus 101 ~~~~pGi~V~~~------------~~e~ll~~l~~~~~ly~L~E~G~DI~~v~~~~np~FIlGDH~g~t~e~~k~L~r~~ 168 (197)
T COG1901 101 REVTPGIYVRNG------------GFEALLAELAEGRSLYYLHEDGRDISEVDLIPNPVFILGDHIGLTEEDEKLLERHA 168 (197)
T ss_pred eecCCCEEEecC------------CHHHHHHHHhccCcEEEEccCCccHhhcccCCCceEEeeCCCCCCHHHHHHHHHhh
Confidence 346789998865 789999999999999988654321 11223322 3456999999999999
Q ss_pred CceEEEe
Q 008469 187 TGIVCVS 193 (564)
Q Consensus 187 ~Glicva 193 (564)
.+.|.+.
T Consensus 169 ~~~ISlG 175 (197)
T COG1901 169 AKKISLG 175 (197)
T ss_pred CceeEeC
Confidence 8887663
No 61
>COG3089 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.64 E-value=1e+02 Score=26.35 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=19.0
Q ss_pred CHHHHHHHHHcCCEEEEEeCC
Q 008469 139 SIPEAIEDIRQGKFVVVVDDE 159 (564)
Q Consensus 139 ~Ve~AI~aLr~G~~VvV~Dde 159 (564)
.|+++..+|++|+.|||++..
T Consensus 38 kv~~~r~qlq~GeaVivwsel 58 (72)
T COG3089 38 KVADVRRQLQSGEAVIVWSEL 58 (72)
T ss_pred HHHHHHHHHhcCceEEEecch
Confidence 689999999999999998864
No 62
>PRK07505 hypothetical protein; Provisional
Probab=20.58 E-value=1.1e+02 Score=32.67 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=29.7
Q ss_pred CceEEEEEEeCCCCCcCChhHHHHHHHhcCCceE
Q 008469 293 DPAAVLCEVVDDDGSMARLPKLREFAKRENLKII 326 (564)
Q Consensus 293 ~PaaVicEiv~~dG~mar~~~l~~fA~~h~L~iv 326 (564)
.-++++||-.+..|.+...+++.++|++|++.+|
T Consensus 180 ~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li 213 (402)
T PRK07505 180 KTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLY 213 (402)
T ss_pred CCEEEEEecccccCCcCCHHHHHHHHHHcCCEEE
Confidence 4678899988888999999999999999997654
No 63
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=20.19 E-value=72 Score=36.35 Aligned_cols=152 Identities=16% Similarity=0.203 Sum_probs=88.2
Q ss_pred HHHHHhcCCceEeehhHHHHHhhccccccccccccccCCCCcE-EEEEEEec-CCCceEEEEEeccCCCCCceeEEeccC
Q 008469 315 REFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPF-TAYCYRSI-LDGIEHIAMVKGDIGDGQDILVRVHSE 392 (564)
Q Consensus 315 ~~fA~~h~L~ivsi~DLi~yr~~~e~lVer~~~~~lpT~~G~F-~~~~Yr~~-~dg~EHlALV~Gdi~~~~~vLVRVHSe 392 (564)
.+.|.++|+.++-|-|=....++.+..++.+..+- +.. -.++|... .+..+.++=+...+.+- =+|+-
T Consensus 103 v~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag-----~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~-----Gad~I 172 (499)
T PRK12330 103 VEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVG-----KHAQGTICYTVSPIHTVEGFVEQAKRLLDM-----GADSI 172 (499)
T ss_pred HHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhC-----CeEEEEEEEecCCCCCHHHHHHHHHHHHHc-----CCCEE
Confidence 45567789999988887777777776666665321 222 24566421 11111111000111110 13555
Q ss_pred CcccccccCCCCCChHHHHHHHHHHHHhC-CEEEEEEeCCCCCCcchhhhhhhhccccCCCCchHhhhh-cCCCCCCcCh
Q 008469 393 CLTGDIFGSARCDCGDQLALAMQQIEAAG-RGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEE-LGLPVDSREY 470 (564)
Q Consensus 393 CltgDvfgS~rCDCg~QL~~AL~~Ia~~G-~GVlVYLr~qEGRGiGL~~Kl~AY~Lqd~g~DTveAn~~-LG~~~D~RdY 470 (564)
|+ -|..|... ..+...-++.|.++- ..+-|-++.|...|.++.|-+.|+ +.|.|.++.... +|...-.=..
T Consensus 173 ~I-kDtaGll~---P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAi---eAGad~vDtai~Glg~~aGn~at 245 (499)
T PRK12330 173 CI-KDMAALLK---PQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAI---EAGVDVVDTAISSMSLGPGHNPT 245 (499)
T ss_pred Ee-CCCccCCC---HHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHH---HcCCCEEEeecccccccccchhH
Confidence 55 58887665 567777777777653 268888889999999999999987 678877765432 2222211122
Q ss_pred hHHHHHHHHcCCC
Q 008469 471 GIGAQMLRDLGVR 483 (564)
Q Consensus 471 gigAQILrdLGV~ 483 (564)
..-...|+.+|+.
T Consensus 246 E~vv~~L~~~g~~ 258 (499)
T PRK12330 246 ESLVEMLEGTGYT 258 (499)
T ss_pred HHHHHHHHhcCCC
Confidence 2344567776665
No 64
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=20.01 E-value=1.9e+02 Score=30.29 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=27.3
Q ss_pred CceEEEEE-EeCCCCCcCChhHHHHHHHhcCCceE
Q 008469 293 DPAAVLCE-VVDDDGSMARLPKLREFAKRENLKII 326 (564)
Q Consensus 293 ~PaaVicE-iv~~dG~mar~~~l~~fA~~h~L~iv 326 (564)
.+..|+.+ +.+..|..++.+++.++|++|++.+|
T Consensus 170 ~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li 204 (393)
T TIGR01822 170 RHRLIATDGVFSMDGVIAPLDEICDLADKYDALVM 204 (393)
T ss_pred CceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEE
Confidence 45566655 45678999999999999999998865
Done!