RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 008469
(564 letters)
>gnl|CDD|215445 PLN02831, PLN02831, Bifunctional GTP cyclohydrolase II/
3,4-dihydroxy-2-butanone-4-phosphate synthase.
Length = 450
Score = 892 bits (2306), Expect = 0.0
Identities = 361/450 (80%), Positives = 395/450 (87%), Gaps = 1/450 (0%)
Query: 103 DAIAFGALAADTAPTTFGFSSDDDEFDLDSPTEGFSSIPEAIEDIRQGKFVVVVDDEDRE 162
D+ +FG LAA+ PTT F D E D D PTEGFSSI EA+EDIRQGKFVVVVDDEDRE
Sbjct: 1 DSASFGTLAAEITPTTDDFFVSDAEGDPDRPTEGFSSIAEALEDIRQGKFVVVVDDEDRE 60
Query: 163 NEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFT 222
NEGDLIMAA L TPEAMAF+VKHG+GIVCVSMKGEDL+RL LPLMV KEN+EK+ TAFT
Sbjct: 61 NEGDLIMAASLVTPEAMAFLVKHGSGIVCVSMKGEDLDRLRLPLMVPSKENEEKMATAFT 120
Query: 223 VTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEA 282
VTVDAKHGTTTGVSA DRA T+L LAS DSKP DF RPGHIFPL+YREGGVLKRAGHTEA
Sbjct: 121 VTVDAKHGTTTGVSASDRAKTILALASPDSKPEDFRRPGHIFPLRYREGGVLKRAGHTEA 180
Query: 283 SVDLAVLAGFDPAAVLCEVVDD-DGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKL 341
+VDLAVLAG P VLCE+V+D DGSMARLP+LR+FA+ LKIISIADLIRYRRKR+KL
Sbjct: 181 AVDLAVLAGLPPVGVLCEIVNDEDGSMARLPQLRKFAEEHGLKIISIADLIRYRRKREKL 240
Query: 342 VDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGS 401
V+R++ AR+PT WG FTAYCYRS LDGIEHIA VKGDIGDGQD+LVRVHSECLTGDIFGS
Sbjct: 241 VERTAVARLPTKWGLFTAYCYRSKLDGIEHIAFVKGDIGDGQDVLVRVHSECLTGDIFGS 300
Query: 402 ARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEEL 461
ARCDCG+QLALAMQ IE AGRGVLVYLRGHEGRGIGLGHKLRAYNLQD+GRDTVEANEEL
Sbjct: 301 ARCDCGNQLALAMQLIEKAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDEGRDTVEANEEL 360
Query: 462 GLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKR 521
GLPVDSREYGIGAQ+LRDLGVRTM+LMTNNP+KY GLKGYGLAV GRVPL+TPI KENKR
Sbjct: 361 GLPVDSREYGIGAQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVPLLTPITKENKR 420
Query: 522 YLETKRAKMGHIYGLESNGRLTNLINGNGK 551
YLETKR KMGH+YG + G ++ L +
Sbjct: 421 YLETKRTKMGHVYGSDLGGHVSGLESAETN 450
>gnl|CDD|181774 PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II protein;
Provisional.
Length = 402
Score = 702 bits (1815), Expect = 0.0
Identities = 256/397 (64%), Positives = 311/397 (78%), Gaps = 2/397 (0%)
Query: 136 GFSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMK 195
F SI EAI DI GK V+VVDDEDRENEGDLI AA+ ATPE +AF+V+H +G VCV +
Sbjct: 3 MFDSIEEAIADIAAGKAVIVVDDEDRENEGDLIFAAEKATPELVAFMVRHTSGYVCVPLT 62
Query: 196 GEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPG 255
ED +RLDLP MVA N + TAFTV+VDA +G TTG+SA DRATT+ LA SKP
Sbjct: 63 EEDADRLDLPPMVAH--NQDSHGTAFTVSVDAANGVTTGISAADRATTIRLLADPASKPA 120
Query: 256 DFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLR 315
DF RPGH+FPL+ + GGVL+RAGHTEA+VDLA LAG PA V+CE+V++DG+MAR+P+LR
Sbjct: 121 DFTRPGHVFPLRAKPGGVLRRAGHTEAAVDLARLAGLQPAGVICEIVNEDGTMARVPELR 180
Query: 316 EFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMV 375
FA +L +I+IADLI YRR+ +KLV+R AR+PT +G F A Y SILDG EH+A+V
Sbjct: 181 VFADEHDLALITIADLIAYRRRHEKLVEREVEARLPTRFGEFRAIGYTSILDGKEHVALV 240
Query: 376 KGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRG 435
KGDIGDG+D+LVRVHSECLTGD+FGS RCDCG QL A+ QI GRGV++Y+RG EGRG
Sbjct: 241 KGDIGDGEDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAQIAEEGRGVVLYMRGQEGRG 300
Query: 436 IGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKY 495
IGL HKLRAY LQD+G DTV+AN +LG P D+R+YGIGAQ+L DLGVR+M+L+TNNP K
Sbjct: 301 IGLLHKLRAYQLQDEGYDTVDANLKLGFPADARDYGIGAQILVDLGVRSMRLLTNNPRKI 360
Query: 496 VGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 532
GL+GYGL V RVPL +EN+RYL TKR +MGH
Sbjct: 361 AGLQGYGLHVTERVPLPVRANEENERYLRTKRDRMGH 397
>gnl|CDD|236465 PRK09319, PRK09319, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II/unknown
domain fusion protein; Provisional.
Length = 555
Score = 582 bits (1502), Expect = 0.0
Identities = 236/420 (56%), Positives = 301/420 (71%), Gaps = 9/420 (2%)
Query: 137 FSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKG 196
F SI +A+ IR G+ VVVVDDE+RENEGDLI AAQ ATPE + F+ G++C++M G
Sbjct: 5 FDSIDDALAAIRNGECVVVVDDENRENEGDLICAAQFATPEMINFMATEARGLICLAMTG 64
Query: 197 EDLERLDLPLMVAQKENDEKLCTAFTVTVDA--KHGTTTGVSARDRATTVLTLASRDSKP 254
E L+ LDLPLMV N + TAFTV++DA + G +TG+SA DRA T+ + D+KP
Sbjct: 65 ERLDELDLPLMVD--RNTDSNQTAFTVSIDAGPELGVSTGISAEDRARTIQVAINPDTKP 122
Query: 255 GDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKL 314
D RPGHIFPL+ +EGGVLKRAGHTEA+VDLA LAG PA V+CE+ + DGSMARLP+L
Sbjct: 123 EDLRRPGHIFPLRAKEGGVLKRAGHTEAAVDLARLAGLYPAGVICEIQNPDGSMARLPEL 182
Query: 315 REFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAM 374
+E+AK+ LK+ISIADLI YR + ++ V R + A++P+ +G F AY YR+ LDG EH+A+
Sbjct: 183 KEYAKQHGLKLISIADLISYRLQNERFVYREAVAKLPSQFGQFQAYGYRNELDGSEHVAL 242
Query: 375 VKGDIGD--GQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHE 432
VKGD + + +LVR+HSECLTGD FGS RCDC QL A++ IE G GV+VYLR E
Sbjct: 243 VKGDPANFKDEPVLVRMHSECLTGDAFGSLRCDCRMQLEAALKMIENEGEGVVVYLR-QE 301
Query: 433 GRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNP 492
GRGIGL +KL+AY+LQD G DTVEANE LG P D R YG+GAQ+L DLG++ ++L+TNNP
Sbjct: 302 GRGIGLINKLKAYSLQDGGLDTVEANERLGFPADLRNYGVGAQILNDLGIKRLRLITNNP 361
Query: 493 SKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESNGRLTNLINGNGKP 552
K GL GYGL V RVPL+ N YL TK K+GH+ L +T I +G+P
Sbjct: 362 RKIAGLGGYGLEVVDRVPLLIEANDYNAEYLATKAEKLGHL--LLQTYLVTIAIAWDGEP 419
>gnl|CDD|237587 PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II-like protein;
Provisional.
Length = 367
Score = 395 bits (1016), Expect = e-134
Identities = 175/373 (46%), Positives = 228/373 (61%), Gaps = 13/373 (3%)
Query: 138 SSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGE 197
+SI E I DIR G+ V++VD+EDRENEGDL+MAA+ TPEA+ F+ KHG G++C+++ E
Sbjct: 4 ASIEEIIADIRAGRMVILVDEEDRENEGDLVMAAEFVTPEAINFMAKHGRGLICLTLTEE 63
Query: 198 DLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDF 257
E+L LPLM + N + T FTV+++A G TTG+SA DRA T+ +RD+KP D
Sbjct: 64 RCEQLGLPLMTYR--NGTQYGTNFTVSIEAAEGVTTGISAADRARTIQAAVARDAKPEDI 121
Query: 258 NRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 317
+PGHIFPL + GGVL RAGHTEA DLA LAG PAAV+CE++ DDG+MARLP L EF
Sbjct: 122 VQPGHIFPLMAQPGGVLVRAGHTEAGCDLAALAGLTPAAVICEIMKDDGTMARLPDLEEF 181
Query: 318 AKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKG 377
AK LKI +IADLI YR + + +V+R + + T G F YR G H+A+VKG
Sbjct: 182 AKEHGLKIGTIADLIHYRSRTESIVERVAERPMQTAHGEFRLVAYRDKPSGSTHLALVKG 241
Query: 378 DIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIG 437
I ++ LVRVH D+ + L AM I AG GV+V
Sbjct: 242 TICPDEETLVRVHEPLSVLDLLEVGQPTHSWSLDAAMAAIAEAGSGVVVL---------- 291
Query: 438 LGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVG 497
L +L D R A PVD R YGIGAQ+LRDLGV M+L++ +P K+
Sbjct: 292 LNCGDDGEHLLDRFRAEEAAAALKRRPVDYRTYGIGAQILRDLGVGKMRLLS-SPRKFPS 350
Query: 498 LKGYGLAVAGRVP 510
+ G+GL V G VP
Sbjct: 351 MSGFGLEVTGYVP 363
>gnl|CDD|238348 cd00641, GTP_cyclohydro2, GTP cyclohydrolase II (RibA). GTP
cyclohydrolase II catalyzes the conversion of GTP to
2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'
phosphate, formate, pyrophosphate (APy), and GMP in the
biosynthetic pathway of riboflavin. Riboflavin is the
precursor molecule for the synthesis of the coenzymes
flavin mononucleotide (FMN) and flavin adenine
dinucleotide (FAD) which are essential to cell
metabolism. The enzyme is present in plants and numerous
pathogenic bacteria, especially gram negative organisms,
who are dependent on endogenous synthesis of the vitamin
because they lack an appropriate uptake system. For
animals and humans, which lack this biosynthetic
pathway, riboflavin is the essential vitamin B2. GTP
cyclohydrolase II requires magnesium ions for activity
and has a bound catalytic zinc. The functionally active
form is thought to be a homodimer. A paralogous protein
is encoded in the genome of Streptomyces coelicolor,
which converts GTP to
2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone
5'-phosphate (FAPy), an activity that has otherwise been
reported for unrelated GTP cyclohydrolases III.
Length = 193
Score = 331 bits (851), Expect = e-112
Identities = 113/193 (58%), Positives = 144/193 (74%), Gaps = 1/193 (0%)
Query: 341 LVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFG 400
LV++ + A +PT +G F + DG EH+A+VKGD DG+ +LVRVHSECLTGD+FG
Sbjct: 1 LVEKVAEAPLPTRFGDFRIVAFEDTDDGKEHVALVKGDPADGEPVLVRVHSECLTGDVFG 60
Query: 401 SARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEE 460
S RCDCG QL A+++I G GVL+YLR EGRGIGL +KLRAY LQD G DTVEANE
Sbjct: 61 SLRCDCGPQLEEALEEIAEEGGGVLLYLR-QEGRGIGLANKLRAYALQDQGLDTVEANEA 119
Query: 461 LGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENK 520
LG P D+R+YG+ AQ+LRDLG+++++L+TNNP K L+GYG+ V RVPL +ENK
Sbjct: 120 LGFPADARDYGLAAQILRDLGIKSVRLLTNNPDKIDALEGYGIEVVERVPLEVEPNEENK 179
Query: 521 RYLETKRAKMGHI 533
YL+TKR KMGH+
Sbjct: 180 GYLKTKRDKMGHL 192
>gnl|CDD|236464 PRK09318, PRK09318, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II protein;
Provisional.
Length = 387
Score = 335 bits (860), Expect = e-110
Identities = 161/396 (40%), Positives = 237/396 (59%), Gaps = 25/396 (6%)
Query: 144 IEDIRQ----GKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGED- 198
+E++R+ GK V+++D RENE D + AQ+ T E + F + +G G++C++ ED
Sbjct: 1 MEELREAFLEGKPVILIDRN-RENEADFVYPAQIITEEVVNFFLSYGKGLLCLTADEEDL 59
Query: 199 LERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFN 258
L+R L E T F + VD +GT TG+SA +RA T LA +F
Sbjct: 60 LKRGFFKLPSNGGE------TNFFIPVD--YGTGTGISASERALTCRKLAE-GLYVHEFR 110
Query: 259 RPGHIFPLKYREGGVL--KRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLRE 316
PGH+ L GG+ +R GHTEAS++L+ L GF AV+ E++D+ G L + +
Sbjct: 111 YPGHVTLL----GGIGFNRRRGHTEASLELSELLGFKRYAVIVEILDEKGDSHDLDYVLK 166
Query: 317 FAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVK 376
A++ +L ++ I D+ + +R +L+ + A++PT +G F + + LDG EH+A+VK
Sbjct: 167 LAEKFSLPVLEIDDVWKEFVRRKQLIKVKAEAKLPTDYGEFEIVSFENHLDGKEHVAIVK 226
Query: 377 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGI 436
+G+ LVR+HSEC+TGD S RCDCG QLA ++ I G G+L+YLR EGRGI
Sbjct: 227 EPLGE--VPLVRIHSECVTGDTLSSLRCDCGSQLANFLRMISKEG-GILIYLR-QEGRGI 282
Query: 437 GLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYV 496
GL +K++AY LQD G DTVEAN LG D R+Y Q+L+ LG+ ++L+TNNP K
Sbjct: 283 GLSNKIKAYELQDKGLDTVEANRALGFKEDERDYAAAFQILKALGIEKVRLLTNNPRKTK 342
Query: 497 GLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 532
L+ YG+ V VPL + K N+ YL+TK K+GH
Sbjct: 343 ALEKYGIEVVETVPLYGEVTKYNRFYLKTKVEKLGH 378
>gnl|CDD|216197 pfam00926, DHBP_synthase, 3,4-dihydroxy-2-butanone 4-phosphate
synthase. 3,4-Dihydroxy-2-butanone 4-phosphate is
biosynthesised from ribulose 5-phosphate and serves as
the biosynthetic precursor for the xylene ring of
riboflavin. Sometimes found as a bifunctional enzyme
with pfam00925.
Length = 193
Score = 319 bits (821), Expect = e-107
Identities = 116/196 (59%), Positives = 151/196 (77%), Gaps = 3/196 (1%)
Query: 140 IPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDL 199
I EAIE ++ GK V+VVDDEDRENEGDL++AA+ TPE++ F+++H G++CV++ E
Sbjct: 1 IEEAIEALKAGKPVIVVDDEDRENEGDLVIAAEKVTPESVNFMIRHARGLICVALTEERA 60
Query: 200 ERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNR 259
+RL LP MV N ++ TAFTV+VDAK GTTTG+SA DRA T+ LA ++ P DF R
Sbjct: 61 DRLGLPPMVD--RNTDRFGTAFTVSVDAK-GTTTGISAADRALTIRALADPNAFPEDFVR 117
Query: 260 PGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAK 319
PGH+FPL+ +EGGVL+R GHTEA+VDLA LAG PAAV+CE+++DDG+MARLP L EFAK
Sbjct: 118 PGHVFPLRAKEGGVLERRGHTEAAVDLARLAGLTPAAVICEILNDDGTMARLPDLEEFAK 177
Query: 320 RENLKIISIADLIRYR 335
L +I+I DLI YR
Sbjct: 178 EHGLPLITIEDLIEYR 193
>gnl|CDD|223186 COG0108, RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase
[Coenzyme metabolism].
Length = 203
Score = 313 bits (805), Expect = e-105
Identities = 117/204 (57%), Positives = 153/204 (75%), Gaps = 3/204 (1%)
Query: 137 FSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKG 196
F + EAIE +R GK V+VVDDEDRENEGDLI AA+ TPE +AF+ +H +G++CV++
Sbjct: 3 FERVEEAIEALRAGKPVIVVDDEDRENEGDLIFAAEAVTPEQIAFMRRHASGLICVALTE 62
Query: 197 EDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGD 256
E +RL LP MV N + TAFTV+VDA+ TTTG+SA DRA T+ LA +KP D
Sbjct: 63 ERAKRLGLPPMVD--NNTDAHGTAFTVSVDARE-TTTGISAADRALTIRALADPGAKPSD 119
Query: 257 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLRE 316
F RPGH+FPL+ ++GGVL+R GHTEA+VDLA LAG PA V+CE+++DDG+MARLP+L E
Sbjct: 120 FRRPGHVFPLRAKDGGVLERRGHTEAAVDLARLAGLKPAGVICEIMNDDGTMARLPELEE 179
Query: 317 FAKRENLKIISIADLIRYRRKRDK 340
FAK L +I+I DLI YR+K ++
Sbjct: 180 FAKEHGLPVITIEDLIEYRKKHER 203
>gnl|CDD|181775 PRK09314, PRK09314, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II protein;
Provisional.
Length = 339
Score = 314 bits (808), Expect = e-103
Identities = 154/375 (41%), Positives = 215/375 (57%), Gaps = 54/375 (14%)
Query: 137 FSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKG 196
+ EAIEDI+ GK +++VDDEDRENEGDL+ AA +TPE + F+ H G++CVS+
Sbjct: 3 IKRVEEAIEDIKNGKMLIMVDDEDRENEGDLVYAAIFSTPEKVNFMATHARGLICVSLTK 62
Query: 197 EDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGD 256
E ++L+LP MV+ +N TAFTV++DAK TT G+SA +R T+ LA SKP D
Sbjct: 63 ELAKKLELPPMVS--KNTSNHETAFTVSIDAKEATT-GISAFERDMTIKLLADDTSKPSD 119
Query: 257 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLRE 316
F RPGHIFPL ++GGVL R GHTE SVDL LAG P AV+CE++ +DG+MAR L +
Sbjct: 120 FVRPGHIFPLIAKDGGVLVRTGHTEGSVDLCKLAGLKPVAVICEIMKEDGTMARRDDLED 179
Query: 317 FAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILD--GIEHIAM 374
FAK+ NLK+I ++DL+ YR K + L+ F A Y + LD EHIA
Sbjct: 180 FAKKHNLKMIYVSDLVEYRLKNESLIKEEEKEESEFA--GFKAEKY-TFLDHLQNEHIAF 236
Query: 375 VKGDIGDGQDILVRVHS-----ECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLR 429
G+I V+ H E LT D F +L A++ ++ G GVL++L
Sbjct: 237 KFGEIKLTP--NVKFHKIGSDFELLTSDKF--------SELLKAIEYLKKNG-GVLIFLN 285
Query: 430 GHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMT 489
+ E N+ ++YGIGAQ+L+ LG++ +KL++
Sbjct: 286 TE----------------------SKENNQV-------KDYGIGAQILKYLGIKDIKLLS 316
Query: 490 NNPSK-YVGLKGYGL 503
++ K YVGL G+GL
Sbjct: 317 SSEDKEYVGLSGFGL 331
>gnl|CDD|223878 COG0807, RibA, GTP cyclohydrolase II [Coenzyme metabolism].
Length = 193
Score = 288 bits (740), Expect = 2e-95
Identities = 112/193 (58%), Positives = 143/193 (74%), Gaps = 2/193 (1%)
Query: 340 KLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIF 399
LV+R + A++PT G F YR +DG EH+A+VKGDI + +LVRVHSECLTGD+
Sbjct: 1 PLVERVAEAKLPTELGEFRIVGYRDKIDGKEHLALVKGDISA-EPVLVRVHSECLTGDVL 59
Query: 400 GSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANE 459
GS RCDCG+QL A+++I G GV+VYLR EGRGIGL +K+RAY LQD G DTVEAN
Sbjct: 60 GSLRCDCGEQLEAALRRIAEEGSGVVVYLR-QEGRGIGLLNKIRAYALQDKGADTVEANL 118
Query: 460 ELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKEN 519
LG P D R+YGIGAQ+L+DLG++ ++L+TNNP K GL+G+G+ V RVPLI EN
Sbjct: 119 ALGFPADERDYGIGAQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLIVGANPEN 178
Query: 520 KRYLETKRAKMGH 532
+ YL+TK+ KMGH
Sbjct: 179 EFYLKTKKEKMGH 191
>gnl|CDD|234745 PRK00393, ribA, GTP cyclohydrolase II; Reviewed.
Length = 197
Score = 287 bits (736), Expect = 1e-94
Identities = 99/196 (50%), Positives = 130/196 (66%), Gaps = 1/196 (0%)
Query: 342 VDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGS 401
+ R + A++PT WG F + + G EH+A+V GDI + +LVRVHSECLTGD S
Sbjct: 3 LKRVAEAKLPTPWGDFLMVGFEELATGKEHVALVFGDISGTEPVLVRVHSECLTGDALFS 62
Query: 402 ARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEEL 461
RCDCG QL A+++I GRG+L+YLR EGRGIGL +K+RAY LQD G DTVEAN +L
Sbjct: 63 LRCDCGFQLEAALERIAEEGRGILLYLR-QEGRGIGLLNKIRAYALQDQGLDTVEANHQL 121
Query: 462 GLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKR 521
G D R+Y + A ML+ LGV+ ++L+TNNP K L G+ + RVPLI N+
Sbjct: 122 GFAADERDYTLAADMLKALGVKKVRLLTNNPKKVEALTEAGINIVERVPLIVGRNPHNEH 181
Query: 522 YLETKRAKMGHIYGLE 537
YL+TK KMGH+ L+
Sbjct: 182 YLKTKAEKMGHLLSLD 197
>gnl|CDD|216196 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II. GTP
cyclohydrolase II catalyzes the first committed step in
the biosynthesis of riboflavin.
Length = 169
Score = 286 bits (733), Expect = 1e-94
Identities = 110/170 (64%), Positives = 132/170 (77%), Gaps = 1/170 (0%)
Query: 342 VDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGS 401
V+R + A +PT +G F YR ++DG EH+A+VKGDI + +LVRVHSECLTGD+FGS
Sbjct: 1 VERVAEAPLPTRFGEFRLVAYRDLVDGKEHLALVKGDISPDEPVLVRVHSECLTGDVFGS 60
Query: 402 ARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEEL 461
RCDCG+QL A+++I GRGVLVYLR EGRGIGL +KL+AY LQD G DTVEAN L
Sbjct: 61 LRCDCGEQLEKALRRIAEEGRGVLVYLR-QEGRGIGLLNKLKAYALQDQGLDTVEANLAL 119
Query: 462 GLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 511
G P D R+YGIGAQ+LRDLGVR M+L+TNNP K VGL+GYGL V RVPL
Sbjct: 120 GFPDDLRDYGIGAQILRDLGVRKMRLLTNNPRKIVGLEGYGLEVVERVPL 169
>gnl|CDD|171535 PRK12485, PRK12485, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II-like protein;
Provisional.
Length = 369
Score = 291 bits (745), Expect = 1e-93
Identities = 162/376 (43%), Positives = 219/376 (58%), Gaps = 12/376 (3%)
Query: 137 FSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKG 196
F++I E IED RQGK V++VDDEDRENEGDL++AA+ +A+ F+ + G++C+++
Sbjct: 3 FNTIEEIIEDYRQGKMVLLVDDEDRENEGDLLLAAERCDAQAINFMAREARGLICLTLTD 62
Query: 197 EDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGD 256
E +RL L MV N TAFTV+++A G TTG+SA DRA TV + +++P D
Sbjct: 63 EHCQRLGLEQMVPS--NGSVFSTAFTVSIEAATGVTTGISAADRARTVAAAVAPNARPED 120
Query: 257 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLRE 316
+PGHIFPL+ REGGVL RAGHTEA DLA LAGF PA+V+ EV++DDG+MAR P L
Sbjct: 121 LVQPGHIFPLRAREGGVLTRAGHTEAGCDLARLAGFSPASVIVEVMNDDGTMARRPDLEV 180
Query: 317 FAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVK 376
FA + +KI +IADLI YR + + R +PT+ G F Y ++G H+AMV
Sbjct: 181 FAAKHGIKIGTIADLIHYRLSTEHTIKRIGERELPTVHGTFRLVTYEDRIEGGVHMAMVM 240
Query: 377 GDIGDGQDILVRVHSECLTGDIFGSARCDCGD-QLALAMQQIEAAGRGVLVYLRGHEGRG 435
GDI Q LVRVH D+ G+ + L A+Q++ G GV+V L HE
Sbjct: 241 GDIRREQPTLVRVHVIDPLRDLVGAEYAGPANWTLWAALQKVAEEGHGVVVVLANHESSQ 300
Query: 436 IGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKY 495
L R L R + + E G GAQ+L+DLGV ++ + P KY
Sbjct: 301 ALLE---RIPQLTQPPRQYQRSQSRI-----YSEVGTGAQILQDLGVGKLRHL-GPPLKY 351
Query: 496 VGLKGYGLAVAGRVPL 511
GL GY L V +P
Sbjct: 352 AGLTGYDLEVVESIPF 367
>gnl|CDD|232999 TIGR00506, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase.
Several members of the family are bifunctional,
involving both ribA and ribB function. In these cases,
ribA tends to be on the C-terminal end of the protein
and ribB tends to be on the N-terminal [Biosynthesis of
cofactors, prosthetic groups, and carriers, Riboflavin,
FMN, and FAD].
Length = 199
Score = 260 bits (665), Expect = 4e-84
Identities = 107/200 (53%), Positives = 142/200 (71%), Gaps = 3/200 (1%)
Query: 137 FSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKG 196
F + EA+E +++G+ V+V DDEDRENEGDLI+AA+ TPE +AF+ +H G++CV++
Sbjct: 2 FERVEEALEALKKGEIVLVYDDEDRENEGDLIVAAEFITPEQIAFMRRHAGGLICVAITP 61
Query: 197 EDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHG-TTTGVSARDRATTVLTLASRDSKPG 255
+ ++LDLP MV N TA T T+ H T TG+SA DRA T+ + KP
Sbjct: 62 DIADKLDLPPMVDI--NTSASGTASTFTITVAHRKTFTGISANDRALTIRAALADVVKPS 119
Query: 256 DFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLR 315
DF RPGH+FPL+ +GGVL R GHTEASVDLA LAG PA V+CE+++DDG+MAR P+L
Sbjct: 120 DFRRPGHVFPLRAADGGVLTRGGHTEASVDLAELAGLKPAGVICEMMNDDGTMARKPELM 179
Query: 316 EFAKRENLKIISIADLIRYR 335
E+AK+ NLK+ISI DLI YR
Sbjct: 180 EYAKKHNLKLISIEDLIEYR 199
>gnl|CDD|235119 PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Provisional.
Length = 217
Score = 256 bits (657), Expect = 1e-82
Identities = 102/194 (52%), Positives = 142/194 (73%), Gaps = 2/194 (1%)
Query: 143 AIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERL 202
A++ +R+G+ V+V+DDEDRENEGD+I AA+ T E MA ++HG+GIVC+ + E ++L
Sbjct: 19 ALDALREGRGVMVLDDEDRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLTEERRKQL 78
Query: 203 DLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGH 262
DLP+MV + N + TAFTVT++A G TTGVSA DR TT+ + +KP D NRPGH
Sbjct: 79 DLPMMV--ENNTSQYGTAFTVTIEAAEGVTTGVSAADRITTIRAAIADGAKPSDLNRPGH 136
Query: 263 IFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKREN 322
+FPL+ + GGVL R GHTEA++DL LAG PA VLCE+ +DDG+MAR P+ FAK+ N
Sbjct: 137 VFPLRAQPGGVLTRRGHTEATIDLMTLAGLKPAGVLCELTNDDGTMARAPECIAFAKQHN 196
Query: 323 LKIISIADLIRYRR 336
+ +++I DL+ YR+
Sbjct: 197 MPVLTIEDLVAYRQ 210
>gnl|CDD|129596 TIGR00505, ribA, GTP cyclohydrolase II. Several members of the
family are bifunctional, involving both ribA and ribB
function. In these cases, ribA tends to be on the
C-terminal end of the protein and ribB tends to be on
the N-terminal. The function of archaeal members of the
family has not been demonstrated and is assigned
tentatively [Biosynthesis of cofactors, prosthetic
groups, and carriers, Riboflavin, FMN, and FAD].
Length = 191
Score = 253 bits (649), Expect = 8e-82
Identities = 100/191 (52%), Positives = 130/191 (68%), Gaps = 1/191 (0%)
Query: 343 DRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSA 402
+R + A++PT +G F + G +H+A+VKGDI D+LVR+HSECLTGD S
Sbjct: 1 ERVAEAKLPTPYGDFYMVGFEEPATGKDHVALVKGDISAHTDVLVRIHSECLTGDALHSL 60
Query: 403 RCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELG 462
RCDCG QL A++QI GRGVL+YLR EGRGIGL +KLRAY LQD G DTV+AN LG
Sbjct: 61 RCDCGFQLEAALKQIAEEGRGVLIYLR-QEGRGIGLINKLRAYALQDKGYDTVQANLMLG 119
Query: 463 LPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRY 522
P D R++ + A +L DLGV+ ++L+TNNP K LK G+ + RVPLI + N+ Y
Sbjct: 120 FPADERDFSLCADILEDLGVKKVRLLTNNPKKIEILKKAGINIVERVPLIVGRNENNEGY 179
Query: 523 LETKRAKMGHI 533
L+TK KMGH+
Sbjct: 180 LDTKAEKMGHL 190
>gnl|CDD|167278 PRK01792, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Provisional.
Length = 214
Score = 237 bits (607), Expect = 2e-75
Identities = 102/198 (51%), Positives = 140/198 (70%), Gaps = 2/198 (1%)
Query: 143 AIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERL 202
AI +QG V+V+DDEDRENEGDLI A+ TPE MA ++++G+GIVC+ + E ++L
Sbjct: 19 AINAFKQGNGVLVLDDEDRENEGDLIFPAETITPEQMAKLIRYGSGIVCLCITDELCQQL 78
Query: 203 DLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGH 262
DLP MV + K TAFTVT++A G +TGVSA DR TT+ + ++KP D +RPGH
Sbjct: 79 DLPPMVQHNTSVNK--TAFTVTIEAAKGVSTGVSAADRVTTIQAAIADNAKPSDLHRPGH 136
Query: 263 IFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKREN 322
+FPL+ GGVL R GHTEA+VDLA LAG+ A V+CE+ +DDG+MAR P++ EFAK+
Sbjct: 137 VFPLRAANGGVLTRRGHTEAAVDLARLAGYKEAGVICEITNDDGTMARTPEIVEFAKKFG 196
Query: 323 LKIISIADLIRYRRKRDK 340
+++I DL+ YR K +
Sbjct: 197 YAVVTIEDLVEYRLKYNI 214
>gnl|CDD|179162 PRK00910, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Provisional.
Length = 218
Score = 209 bits (534), Expect = 2e-64
Identities = 93/205 (45%), Positives = 141/205 (68%), Gaps = 2/205 (0%)
Query: 135 EGFSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSM 194
+ + + A++ +R+G+ V+++DDEDRENEGD+I + + T MA +++ +GIVC+ +
Sbjct: 12 DPITRVENALQALREGRGVLLLDDEDRENEGDIIYSVEHLTNAQMALMIRECSGIVCLCL 71
Query: 195 KGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKP 254
++L+LP MV N+ TAFTV+++AKHG TTGVSA+DR TT+ T A+ +KP
Sbjct: 72 TDAQADKLELPPMVV--NNNSANQTAFTVSIEAKHGVTTGVSAQDRVTTIKTAANPQAKP 129
Query: 255 GDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKL 314
D RPGH+FPL+ R GGVL R GHTE +VDL +AG PA VLCE+ + DG+MA+ P++
Sbjct: 130 EDLARPGHVFPLRARAGGVLARRGHTEGTVDLMQMAGLQPAGVLCELTNPDGTMAKTPEI 189
Query: 315 REFAKRENLKIISIADLIRYRRKRD 339
F K N+ +++I D++ YR + D
Sbjct: 190 IAFGKLHNMPVLTIEDMVMYRNQFD 214
>gnl|CDD|134031 PRK00014, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Provisional.
Length = 230
Score = 195 bits (496), Expect = 9e-59
Identities = 93/196 (47%), Positives = 132/196 (67%), Gaps = 2/196 (1%)
Query: 143 AIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERL 202
A++ +R G+ V+++DD DRENE DLI+AA T MA +++ G+GIVC+ + GE L+RL
Sbjct: 24 ALQHLRIGRPVILMDDFDRENEADLIVAADKLTVPVMAQLIRDGSGIVCLCLPGETLDRL 83
Query: 203 DLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGH 262
+LP MV N + TAFTV+++A+ G TTGVSA DR TT+ + ++ GD PGH
Sbjct: 84 ELPPMVDS--NRSRYSTAFTVSIEAREGVTTGVSAVDRVTTIRAAIAPGARSGDVVSPGH 141
Query: 263 IFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKREN 322
+FPL+ + GGVL R GHTE SVDLA LAG PA VLCE+++ DG+M R L +A +E
Sbjct: 142 VFPLRAQPGGVLTRRGHTEGSVDLAALAGLRPAGVLCELMNADGTMMRGASLERYAAKEG 201
Query: 323 LKIISIADLIRYRRKR 338
L ++I +L + + R
Sbjct: 202 LVALAIDELAAHLQAR 217
>gnl|CDD|236340 PRK08815, PRK08815, GTP cyclohydrolase; Provisional.
Length = 375
Score = 171 bits (435), Expect = 4e-48
Identities = 93/256 (36%), Positives = 135/256 (52%), Gaps = 20/256 (7%)
Query: 282 ASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRD-- 339
+V++A LA PA V + D + FA + +++ADL
Sbjct: 123 GAVEIARLALLLPAMVAVPLPVHDEAA--------FA---GCQALALADLDAGCATSAAA 171
Query: 340 --KLVDRSSAARIPTMWGPFTAYC-YRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTG 396
+LV R +P T + +R + + +A+V G + VRVHS CLTG
Sbjct: 172 GYELVTR---TPVPLRGLGMTEFVVFRGGVAQRDQVAIVVGQPDLSSAVPVRVHSSCLTG 228
Query: 397 DIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVE 456
D+FGS +CDCGDQL + +++ G GVL+YL EGRG G+ K+RAY Q G DT++
Sbjct: 229 DLFGSLKCDCGDQLRHGLAKLKELGGGVLLYL-DQEGRGNGIAAKMRAYGYQHAGLDTID 287
Query: 457 ANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIK 516
A+ +LG D R YG MLR LG+ ++L+TNNP+K L+ G+ V R+ + I
Sbjct: 288 ADAQLGFGPDERRYGSAVAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIRVTGRIT 347
Query: 517 KENKRYLETKRAKMGH 532
EN+RYL TK + GH
Sbjct: 348 AENERYLRTKADRAGH 363
>gnl|CDD|235601 PRK05773, PRK05773, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Validated.
Length = 219
Score = 89.7 bits (223), Expect = 2e-20
Identities = 60/213 (28%), Positives = 103/213 (48%), Gaps = 29/213 (13%)
Query: 139 SIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGED 198
EA + + G V++ D + RE E D++ A T +++ + K+ G++C + +
Sbjct: 2 DFEEARKALESGIPVLIYDFDGREEEVDMVFYAGAVTWKSIYTLRKNAGGLICYATSNSE 61
Query: 199 LERLDLPLM---VAQKENDEKLCT--------AFTVTVDAKH-GTTTGVSARDRATT--- 243
+ L L + + + E KL AF++ V+ H T TG+S DRA T
Sbjct: 62 GKTLGLNFLAEILKRHELYRKLVKKPSYGDEPAFSLWVN--HVKTKTGISDYDRALTIRE 119
Query: 244 ---VLTLASRDSKP------GDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDP 294
V+ LA + + +F PGH+ L R G+ +R GHTE S+ LA AG +P
Sbjct: 120 LHKVVELAKTNPEEAREEFYENFYSPGHVPILIGR--GIRERRGHTELSIALAQAAGLEP 177
Query: 295 AAVLCEVVDDDGSMARLPKLREFAKRENLKIIS 327
+AV+ E++D+ S+ K ++ AK ++
Sbjct: 178 SAVIAEMLDEKLSL-SKEKAKKIAKNLGFPLVE 209
>gnl|CDD|235959 PRK07198, PRK07198, hypothetical protein; Validated.
Length = 418
Score = 47.7 bits (114), Expect = 1e-05
Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 15/147 (10%)
Query: 378 DIGDGQ-DILVRVHSECLTGDIFGSARCDCGDQLALAMQQ-IEAA---GRGVLVYLRGHE 432
D+ D + ++ RVH EC D+FGS C C L +++ I A G G++VY R E
Sbjct: 232 DLADPETELTCRVHDECNGSDVFGSDICTCRPYLTHGIEECIRGAQRGGVGLIVYNR-KE 290
Query: 433 GRGIGLGHKLRAYNL---QDDGRDTVE---ANEELGLPV-DSREYGIGAQMLRDLGVRTM 485
GR +G K YN Q G DT A E V D R + +L LG+R +
Sbjct: 291 GRALGEVTKFLVYNARKRQVGG-DTAATYFARTECVAGVQDMRFQELMPDVLHWLGIRRI 349
Query: 486 -KLMTNNPSKYVGLKGYGLAVAGRVPL 511
+L++ + KY + G G+ V RVP+
Sbjct: 350 HRLVSMSNMKYDAITGSGIEVGERVPI 376
>gnl|CDD|173952 cd08193, HVD, 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the
oxidation of 5-hydroxyvalerate to 5-oxovalerate with
NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD)
is an iron-containing (type III) NAD-dependent alcohol
dehydrogenase. It plays a role in the cyclopentanol
metabolism biochemical pathway. It catalyzes the
oxidation of 5-hydroxyvalerate to 5-oxovalerate with
NAD+ as cofactor. This cyclopentanol (cpn) degradation
pathway is present in some bacteria which can use
cyclopentanol as sole carbon source. In Comamonas sp.
strain NCIMB 9872, this enzyme is encoded by the CpnD
gene.
Length = 376
Score = 32.9 bits (76), Expect = 0.47
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 459 EELGLPVDSREYGIGAQMLRDLGVRTMK---LMTNNP 492
+LG+P RE G+ L L MK L+ NNP
Sbjct: 327 ADLGIPQRLREVGVTEDDLPMLAEDAMKQTRLLVNNP 363
>gnl|CDD|214861 smart00857, Resolvase, Resolvase, N terminal domain. The
N-terminal domain of the resolvase family contains the
active site and the dimer interface. The extended arm at
the C-terminus of this domain connects to the C-terminal
helix-turn-helix domain of resolvase.
Length = 148
Score = 31.4 bits (72), Expect = 0.54
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 17/80 (21%)
Query: 142 EAIEDIRQGKF-VVVVDDEDR--ENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGED 198
+ D+R G V+VV DR + DL+ + + + G +V + D
Sbjct: 56 RLLADLRAGDIDVLVVYKLDRLGRSLRDLL--------ALLELLEEKGVRLVSLKEGILD 107
Query: 199 LERLDLPLM------VAQKE 212
L+ +A+ E
Sbjct: 108 TSTPAGRLLLDILAALAEFE 127
>gnl|CDD|216783 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal
domain. This domain is involved in catalysis and may be
involved in binding beta-glucan. This domain is found
associated with pfam00933.
Length = 221
Score = 30.7 bits (70), Expect = 1.5
Identities = 27/122 (22%), Positives = 41/122 (33%), Gaps = 8/122 (6%)
Query: 105 IA-FGALAADTAPTTFGFSSDDDEFDLDSPTEGFSSIPEAIEDIRQGKFVVVVDDEDREN 163
IA G A D G+S + L +P +G VV ++
Sbjct: 20 IAVIGPNADDPPNGGGGWSGTGNPPYLVTPLDGIR------ARAGNATVVVYGGSNLEDD 73
Query: 164 EGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTV 223
+ + A A +A IV G+ + + +R DL L Q E E + A
Sbjct: 74 DTGIAEAVAAA-KDADVAIVFVGSDAGEGYINEVNGDRTDLTLPGNQDELIEAVAAAGKP 132
Query: 224 TV 225
V
Sbjct: 133 VV 134
>gnl|CDD|240147 cd05016, SIS_PGI_2, Phosphoglucose isomerase (PGI) contains two SIS
(Sugar ISomerase) domains. This classification is based
on the alignment of the second SIS domain. PGI is a
multifunctional enzyme which as an intracellular dimer
catalyzes the reversible isomerization of glucose
6-phosphate to fructose 6-phosphate. As an extracellular
protein, PGI also has functions equivalent to
neuroleukin (NLK), autocrine motility factor (AMF), and
maturation factor (MF). Evidence suggests that PGI, NLK,
AMF, and MF are closely related or identical. NLK is a
neurotrophic growth factor that promotes regeneration
and survival of neurons. The dimeric form of NLK has
isomerase function, whereas its monomeric form carries
out neurotrophic activity. AMF is a cytokine that
stimulates cell migration and metastasis. MF mediates
the differentiation of human myeloid leukemic HL-60
cells to terminal monocytic cells.
Length = 164
Score = 29.5 bits (67), Expect = 3.1
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 13/48 (27%)
Query: 147 IRQG---KFVVVVDDEDRENE----------GDLIMAAQLATPEAMAF 181
I QG K V + + +N+ DL++A LAT EA+ F
Sbjct: 60 IHQGTKDKPVDFIAVKKPQNDVLDYLAGKTLHDLLLANCLATREALMF 107
>gnl|CDD|182777 PRK10850, PRK10850, PTS system phosphohistidinoprotein-hexose
phosphotransferase subunit Hpr; Provisional.
Length = 85
Score = 28.2 bits (62), Expect = 3.1
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 11/72 (15%)
Query: 5 LNISSPSTSALSSPPACRNVKFVSGFPSTKSLLANGHSSYLAFVKLATKSSISIKGVGKT 64
+ I++P+ L + PA + VK GF S ++ +NG S+ + KS ++ +G T
Sbjct: 6 VTITAPN--GLHTRPAAQFVKEAKGFTSEITVTSNGKSA-------SAKSLFKLQTLGLT 56
Query: 65 RATL--ISGEGD 74
+ T+ IS EG+
Sbjct: 57 QGTVVTISAEGE 68
>gnl|CDD|184152 PRK13571, PRK13571, anthranilate synthase component I; Provisional.
Length = 506
Score = 30.0 bits (68), Expect = 4.1
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 84 LVAESTGADDQLVGI-ELQPDAIA-----FGALAADTAPTTFGFSSDDDEFDLDSPTEGF 137
L+A + + + DA+A ALA T FS EF E F
Sbjct: 173 LIANAVNWNGTDERVDAAYDDAVARLDVMTAALAQPLPSTVATFSRPVPEFRAQRTVEEF 232
Query: 138 SSIPE-AIEDIRQGK-FVVVV 156
+ E +E+IR G+ F VV
Sbjct: 233 GAAVEKLVEEIRAGEAFQVVP 253
>gnl|CDD|215932 pfam00465, Fe-ADH, Iron-containing alcohol dehydrogenase.
Length = 323
Score = 29.5 bits (67), Expect = 5.2
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 455 VEANEELGLPVDSREYGIGAQMLRDLGVRTMK--LMTNNP 492
E +LGLP + GI + L L ++ + NP
Sbjct: 276 PELLRDLGLPTSLSDLGITEEDLDKLAEAALRDGCLLTNP 315
>gnl|CDD|183361 PRK11890, PRK11890, phosphate acetyltransferase; Provisional.
Length = 312
Score = 28.8 bits (65), Expect = 7.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 161 RENEGDLIMAAQLATPEAMAFIVKHGTGI 189
RE E + +M L T E M+ +V TG+
Sbjct: 93 REGEAEALMKGSLHTDELMSAVVARDTGL 121
>gnl|CDD|238206 cd00338, Ser_Recombinase, Serine Recombinase family, catalytic
domain; a DNA binding domain may be present either N- or
C-terminal to the catalytic domain. These enzymes
perform site-specific recombination of DNA molecules by
a concerted, four-strand cleavage and rejoining
mechanism which involves a transient phosphoserine
linkage between DNA and serine recombinase. Serine
recombinases demonstrate functional versatility and
include resolvases, invertases, integrases, and
transposases. Resolvases and invertases (i.e. Tn3,
gamma-delta, Tn5044 resolvases, Gin and Hin invertases)
in this family contain a C-terminal DNA binding domain
and comprise a major phylogenic group. Also included are
phage- and bacterial-encoded recombinases such as phiC31
integrase, SpoIVCA excisionase, and Tn4451 TnpX
transposase. These integrases and transposases have
larger C-terminal domains compared to
resolvases/invertases and are referred to as large
serine recombinases. Also belonging to this family are
proteins with N-terminal DNA binding domains similar to
IS607- and IS1535-transposases from Helicobacter and
Mycobacterium.
Length = 137
Score = 28.0 bits (63), Expect = 7.3
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 16/83 (19%)
Query: 142 EAIEDIRQGKF-VVVVDDEDR--ENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSM---K 195
+ D++ GK VV+V+ DR N DL+ +L HG +V
Sbjct: 56 RLLADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLE--------AHGVRVVTADGEIDL 107
Query: 196 GEDLERLDLPLM--VAQKENDEK 216
+ RL L ++ +A++E+
Sbjct: 108 DSEDGRLMLGILAAMAEEESKLI 130
>gnl|CDD|220506 pfam09989, DUF2229, CoA enzyme activase uncharacterized domain
(DUF2229). Members of this family include various
bacterial hypothetical proteins, as well as CoA enzyme
activases. The exact function of this domain has not, as
yet, been defined.
Length = 218
Score = 28.3 bits (64), Expect = 8.6
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 11/59 (18%)
Query: 416 QIEAAGRGVLVYLRGHEGRGIGL-GHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIG 473
+ G L YL +GI L G Y++ D E N G+P GI
Sbjct: 163 DLRKKGEEALAYLEEEGKKGIVLLGR---PYHIYDP-----EIN--HGIPEKLTSLGIA 211
>gnl|CDD|217002 pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family.
Transposases are needed for efficient transposition of
the insertion sequence or transposon DNA. This family
includes transposases for IS116, IS110 and IS902. This
region is often found with pfam01548. The exact
function of this region is uncertain. This family
contains a HHH motif suggesting a DNA-binding function.
Length = 87
Score = 26.7 bits (60), Expect = 8.9
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 57 SIKGVGKTRATLISGE-GDLLAYPNGNNLVA 86
SI G+G A + E GD+ + + L A
Sbjct: 6 SIPGIGPITAAALLAEIGDISRFKSARQLAA 36
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.135 0.385
Gapped
Lambda K H
0.267 0.0767 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,132,289
Number of extensions: 2982837
Number of successful extensions: 2928
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2881
Number of HSP's successfully gapped: 49
Length of query: 564
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 462
Effective length of database: 6,413,494
Effective search space: 2963034228
Effective search space used: 2963034228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.6 bits)