RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 008469
(564 letters)
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
riboflavine biosynthesis, skeletal rearrangement,
antimicrobial target; 1.40A {Escherichia coli} SCOP:
d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Length = 217
Score = 383 bits (985), Expect = e-132
Identities = 104/217 (47%), Positives = 145/217 (66%), Gaps = 2/217 (0%)
Query: 126 DEFDLDSPTEGFSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKH 185
+ L S F + A+ +R+G+ V+V+DDEDRENEGD+I A+ T E MA ++H
Sbjct: 2 AQTLLSSFGTPFERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRH 61
Query: 186 GTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVL 245
G+GIVC+ + + ++LDLP+MV N T FTVT++A G TTGVSA DR TTV
Sbjct: 62 GSGIVCLCITEDRRKQLDLPMMVEN--NTSAYGTGFTVTIEAAEGVTTGVSAADRITTVR 119
Query: 246 TLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDD 305
+ +KP D NRPGH+FPL+ + GGVL R GHTEA++DL LAGF PA VLCE+ +DD
Sbjct: 120 AAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDD 179
Query: 306 GSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLV 342
G+MAR P+ EFA + N+ +++I DL+ YR+ ++
Sbjct: 180 GTMARAPECIEFANKHNMALVTIEDLVAYRQAHERKA 216
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin
biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase,
synthetic gene, ISO; 1.60A {Candida albicans} SCOP:
d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Length = 204
Score = 379 bits (976), Expect = e-131
Identities = 104/205 (50%), Positives = 141/205 (68%), Gaps = 3/205 (1%)
Query: 134 TEGFSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVS 193
T F+ I EA+E + G+F++V+DDEDRENEGDLIMAA+L T E MAF+V++ +G VCV
Sbjct: 2 TNIFTPIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVP 61
Query: 194 MKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSK 253
+ E +L+LP M+A ++ TA+T+T D GTTTG+SA DRA T +LA+ +SK
Sbjct: 62 LSEERANQLELPPMLA--NRSDRHGTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSK 119
Query: 254 PGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVV-DDDGSMARLP 312
P DF +PGHI PL+ G + KR GHTEA+V L+ LAG PA V+CE+V D+DG M RL
Sbjct: 120 PQDFIKPGHILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPAGVICELVRDEDGLMMRLD 179
Query: 313 KLREFAKRENLKIISIADLIRYRRK 337
+F K+ +KII+I L+ Y K
Sbjct: 180 DCIQFGKKHGIKIININQLVEYISK 204
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin
biosynthesi antimicrobial target, structure-based
design, isomerase; 0.98A {Magnaporthe grisea} SCOP:
d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Length = 233
Score = 378 bits (972), Expect = e-130
Identities = 99/230 (43%), Positives = 137/230 (59%), Gaps = 14/230 (6%)
Query: 131 DSPTEGFSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIV 190
P F +IP+ I+ + G+FVVV+DD RENE DLI+AA+ T E MAF+V+H +G++
Sbjct: 6 SIPKSNFDAIPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLI 65
Query: 191 CVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKH-GTTTGVSARDRATTVLTLAS 249
C + E LDLP MV N + TA+TV+VDA+H TTTG+SA DRA LA+
Sbjct: 66 CAPLTPERTTALDLPQMVT--HNADPRGTAYTVSVDAEHPSTTTGISAHDRALACRMLAA 123
Query: 250 RDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDG--- 306
D++P F RPGH+FPL+ GGV R GHTEA V+L LAG P AV+ E+VDD
Sbjct: 124 PDAQPSHFRRPGHVFPLRAVAGGVRARRGHTEAGVELCRLAGKRPVAVISEIVDDGQEVE 183
Query: 307 --------SMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAA 348
M R + FA+R LK+ +I D+I + K + ++ + +
Sbjct: 184 GRAVRAAPGMLRGDECVAFARRWGLKVCTIEDMIAHVEKTEGKLETNGSG 233
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A
{Mycobacterium tuberculosis} PDB: 3mgz_A 3mk5_A
Length = 206
Score = 376 bits (968), Expect = e-130
Identities = 109/205 (53%), Positives = 143/205 (69%), Gaps = 4/205 (1%)
Query: 137 FSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKG 196
S+ A+ DI GK V+V+DDEDRENEGDLI AA+ ATPE +AF+V++ +G +CV + G
Sbjct: 4 LDSVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDG 63
Query: 197 EDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGD 256
+RL L M A N +K TA+TVTVDA++G TG+SA DRATT+ LA S D
Sbjct: 64 AICDRLGLLPMYA--VNQDKHGTAYTVTVDARNGIGTGISASDRATTMRLLADPTSVADD 121
Query: 257 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKL 314
F RPGH+ PL+ ++GGVL+R GHTEA+VDLA +AG PA +CE+V D+GSMA +L
Sbjct: 122 FTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDEL 181
Query: 315 REFAKRENLKIISIADLIRYRRKRD 339
R FA L +I+IADLI +RRK +
Sbjct: 182 RVFADEHGLALITIADLIEWRRKHE 206
>2bz1_A GTP cyclohydrolase II; riboflavin biosynthesis, catalytic zinc,
magnesium; 1.54A {Escherichia coli} SCOP: c.144.1.1 PDB:
2bz0_A
Length = 196
Score = 373 bits (961), Expect = e-129
Identities = 93/192 (48%), Positives = 121/192 (63%), Gaps = 1/192 (0%)
Query: 342 VDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGS 401
+ R + A++PT WG F + + G +H+A+V GDI +L RVHSECLTGD S
Sbjct: 3 LKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFS 62
Query: 402 ARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEEL 461
RCDCG QL A+ QI GRG+L+Y R EGR IGL +K+RAY LQD G DTVEAN +L
Sbjct: 63 LRCDCGFQLEAALTQIAEEGRGILLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQL 121
Query: 462 GLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKR 521
G D R++ + A M + LGV ++L+TNNP K L G+ + RVPLI N+
Sbjct: 122 GFAADERDFTLCADMFKLLGVNEVRLLTNNPKKVEILTEAGINIVERVPLIVGRNPNNEH 181
Query: 522 YLETKRAKMGHI 533
YL+TK KMGH+
Sbjct: 182 YLDTKAEKMGHL 193
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A
{Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB:
1pvy_A* 1pvw_A
Length = 227
Score = 343 bits (883), Expect = e-116
Identities = 63/224 (28%), Positives = 115/224 (51%), Gaps = 23/224 (10%)
Query: 138 SSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGE 197
+++ +AIE +++G+ ++V D ++RE E D+++A+Q TPE + + K G++C ++ +
Sbjct: 2 NNVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPD 61
Query: 198 DLERLDLPLMVAQKE----------------NDEKLCTAFTVTVDAKHGTTTGVSARDRA 241
+L +P MV E ++F++T++ T TG++ DRA
Sbjct: 62 ICNKLGIPFMVDILEFASQKFKVLRELYPNDIPYDEKSSFSITINH-RKTFTGITDNDRA 120
Query: 242 TTVLTLAS------RDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPA 295
T+ LA + +F PG + L+ EG V R GHTE +V LA LA P
Sbjct: 121 FTIKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAEGLVKNRQGHTEMTVALAELANLVPI 180
Query: 296 AVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRD 339
+CE++ DDG+ + + +A++ NL +S ++I Y +
Sbjct: 181 TTICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINYYLDKY 224
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 7e-09
Identities = 81/485 (16%), Positives = 151/485 (31%), Gaps = 144/485 (29%)
Query: 97 GIELQPDAIAFGALAAD-TAPTTFGFSSD--DDEF--DLDSPTEGF------SSIPEAIE 145
+P ++ G+L PT F + ++F L PTEGF ++ E +
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV- 61
Query: 146 DIRQGKFVVVVDDEDRENEG---DLIMAAQLATPEAMAFIVKHGTGI--VCVSMKGEDLE 200
GKF+ V ++ D ++ L E ++ G I + + E+
Sbjct: 62 ----GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN-CYL--EGNDIHALAAKLLQEN-- 112
Query: 201 RLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRP 260
D L+ ++ L + + A+ ++ + L A +
Sbjct: 113 --DTTLVKTKE-----LIKNY---ITARI--MAKRPFDKKSNSALFRAVGEGNAQLVA-- 158
Query: 261 GHIFPLKYREGGVLKRAGHTEASVD-LAVLAGFD-PAAVLCEVVDDDGSMARLPKLREFA 318
IF GG G+T+ + L L + ++ +++ A L E
Sbjct: 159 --IF------GG----QGNTDDYFEELRDL--YQTYHVLVGDLIK---FSAET--LSELI 199
Query: 319 KRENLKIISIA----DLIRYRRKRDKLVDRSSAARIPTMWGP------FTAYCYRSILDG 368
R L + +++ + D+ IP P Y + L G
Sbjct: 200 -RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC-PLIGVIQLAHYVVTAKLLG 257
Query: 369 I---EHIAMVKGDIGDGQDILV-RVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGV 424
E + +KG G Q ++ +E + + F + I V
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF----------FVSVRKAIT-----V 302
Query: 425 LVY--LRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGV 482
L + +R +E L L+ D++E NE G+P + M L +
Sbjct: 303 LFFIGVRCYEAYPN---TSLPPSILE----DSLENNE--GVP---------SPM---LSI 341
Query: 483 RTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIY-GLESNGR 541
L + + + K N +L + + L NG
Sbjct: 342 S-------------NLT--------QEQVQDYVNKTNS-HLPAGK----QVEISL-VNGA 374
Query: 542 LTNLI 546
NL+
Sbjct: 375 -KNLV 378
Score = 53.9 bits (129), Expect = 1e-07
Identities = 85/544 (15%), Positives = 160/544 (29%), Gaps = 205/544 (37%)
Query: 1 MAASLNISSPSTSALSSPPACRNVKFVSGF----PSTKSL--LANGHSSYLAFVKLATKS 54
+ A S SAL N + V+ F + L + + +Y V
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL--- 187
Query: 55 SISIKGVGKTRATLISGEGDL-LAYPNGNNLVAESTGADDQLVGIELQPDAIAFGALAAD 113
IK +T + LI D + G N++ + PD L
Sbjct: 188 ---IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN-------TPDK---DYLL-- 232
Query: 114 TAPTTF---G---FSSDDDEFDLDSPTEGFSSIPEAIEDIRQGKFVVVVDDEDRENEGDL 167
+ P + G + + + + GF+ P + +G L
Sbjct: 233 SIPISCPLIGVIQLAH----YVVTAKLLGFT--PGELRSYLKGATGHS---------QGL 277
Query: 168 IMAAQLATP--------------EAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQK-- 211
+ A +A + FI G+ C E LP + +
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFI-----GVRCY----EAYPNTSLPPSILEDSL 328
Query: 212 ENDEKLCTA-FTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGD-------FNRPGHI 263
EN+E + + ++ + ++ +++ + + P N ++
Sbjct: 329 ENNEGVPSPMLSI---------SNLT-QEQVQDYVN-KTNSHLPAGKQVEISLVNGAKNL 377
Query: 264 FPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEV-VDDDGSMARLPKLREFAKREN 322
V+ +G ++ L G + L + +R+P F++R+
Sbjct: 378 ---------VV--SGPPQS------LYGLNLT--LRKAKAPSGLDQSRIP----FSERK- 413
Query: 323 LKI------ISI----------ADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSIL 366
LK ++ +DLI ++ + + +IP
Sbjct: 414 LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP--------------- 458
Query: 367 DGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQI--EAA---- 420
V D DG D+ RV S ++ I DC + + E
Sbjct: 459 --------VY-DTFDGSDL--RVLSGSISERI-----VDC-----IIRLPVKWETTTQFK 497
Query: 421 -------------GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDS 467
G GVL + R +G G+ + + A T++ N P D
Sbjct: 498 ATHILDFGPGGASGLGVLTH-RNKDGTGVRV---IVA--------GTLDIN-----PDD- 539
Query: 468 REYG 471
+YG
Sbjct: 540 -DYG 542
Score = 38.9 bits (90), Expect = 0.005
Identities = 28/163 (17%), Positives = 42/163 (25%), Gaps = 58/163 (35%)
Query: 97 GIELQPDAIA------FGALAADTAPTTFGFSSDDDEFDLDSPTEGFSSIPEAIEDIRQ- 149
G+ A + ALA+ A SI +E +
Sbjct: 1751 GLIPADATFAGHSLGEYAALAS-LA--------------------DVMSIESLVEVVFYR 1789
Query: 150 GKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVA 209
G + V D + M A P +A S E L+ + V
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIA--INPGRVA-----------ASFSQEALQYV-----VE 1831
Query: 210 Q--KENDEKLCTA-F----TVTVDAKHGTTTGVSARDRATTVL 245
+ K + + V A G + D T VL
Sbjct: 1832 RVGKRTGWLVEIVNYNVENQQYVAA--GDLRAL---DTVTNVL 1869
Score = 38.9 bits (90), Expect = 0.006
Identities = 51/307 (16%), Positives = 89/307 (28%), Gaps = 92/307 (29%)
Query: 306 GS----M----------ARLPKLREFAK---RENLKIISIADLIRYRRKRDKLVDRSSAA 348
GS M A+ + A ++ SI D++ +
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQ--DVWNRADNHFKDTYGF-SILDIVINNPVNLTIH------ 1675
Query: 349 RIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVH---SECLTGDIFGSARCD 405
F + I + + AM+ I DG+ ++ +E T F S +
Sbjct: 1676 --------FGGEKGKRIREN--YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL 1725
Query: 406 CGD----QLAL------AMQQIEAAGRGVL-VYLRGHEGRGIG----LGHKLRAYNLQDD 450
Q AL A + +++ G GH +G L +++
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS---LGEYAALASLADVMSIES- 1781
Query: 451 GRDTVEANEELGLPVDSREYGIGAQ--MLRDLGVRTMKLMTN-NPSKYVGLKGYGLAVAG 507
VE V R G+ Q + RD R+ M NP + V +
Sbjct: 1782 ---LVEV-------VFYR--GMTMQVAVPRDELGRSNYGMIAINPGR-VAA---SFSQEA 1825
Query: 508 RVPLITPIKKENKRYLETKRAKM----------GHIYGLESNGRLTNLINGNGKPSIKSS 557
++ + K +E G + L+ +TN++N I
Sbjct: 1826 LQYVVERVGKRTGWLVEI--VNYNVENQQYVAAGDLRALD---TVTNVLNFIKLQKIDII 1880
Query: 558 SDTVSDS 564
S S
Sbjct: 1881 ELQKSLS 1887
Score = 33.1 bits (75), Expect = 0.34
Identities = 52/297 (17%), Positives = 86/297 (28%), Gaps = 121/297 (40%)
Query: 157 DDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEK 216
D+ ++ G I+ IV + + + GE +R+ +EN
Sbjct: 1650 DNHFKDTYGFSILD-----------IVINNPVNLTIHFGGEKGKRI--------RENYSA 1690
Query: 217 LCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNR-----PGHIFPLKY--- 268
+ F VD K T + +T T S G + P + ++
Sbjct: 1691 MI--FETIVDGKLKTEKIFKEINEHSTSYTFRSEK---GLLSATQFTQPA-LTLMEKAAF 1744
Query: 269 ---REGGVLKR----AGHT--E--ASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 317
+ G++ AGH+ E A LA LA
Sbjct: 1745 EDLKSKGLIPADATFAGHSLGEYAA---LASLAD-------------------------- 1775
Query: 318 AKRENLKIISIADLIRYRRKR----DKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIA 373
++SI L+ R V R R + Y G+ IA
Sbjct: 1776 -------VMSIESLVEVVFYRGMTMQVAVPRDELGR--------SNY-------GM--IA 1811
Query: 374 MVKGDIGDG------QDILVRVHSECLTGDIFGSARCDCGDQLA---LAMQQIEAAG 421
+ G + Q ++ RV TG + ++ + QQ AAG
Sbjct: 1812 INPGRVAASFSQEALQYVVERVGKR--TGWL-----V----EIVNYNVENQQYVAAG 1857
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.9 bits (126), Expect = 2e-07
Identities = 63/482 (13%), Positives = 128/482 (26%), Gaps = 145/482 (30%)
Query: 121 FSSDDDEFD-LDSPTEGFSSIPEAIEDI------------------RQGKFVV--VVDDE 159
F + D D D P S E I+ I + + +V V++
Sbjct: 29 FVDNFDCKDVQDMPKSILSK--EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86
Query: 160 DRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCT 219
R N +M+ + + + I D + V++ + KL
Sbjct: 87 LRINY-KFLMSPIKTEQRQPSMMTR--MYIEQRDRLYNDNQVFA-KYNVSRLQPYLKLRQ 142
Query: 220 AFT-------VTVDAKHGTT-TGVSARDRATTVLTLAS-RDSKPGDFNRPGHIFPLKYRE 270
A V + G +G T + L K IF L
Sbjct: 143 ALLELRPAKNVLI---DGVLGSG-------KTWVALDVCLSYKVQCKM-DFKIFWLNL-- 189
Query: 271 GGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGS-----MARLPKLREFAKRENLKI 325
+ + + + L +D + + + + + E
Sbjct: 190 -------KNCNSPETV-----LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE---- 233
Query: 326 ISIADLIRYRRKRDKLV---DRSSAARIPTMWGPFTAYC-------YRSILDGI-----E 370
+ L++ + + L+ + + W F C ++ + D +
Sbjct: 234 --LRRLLKSKPYENCLLVLLNVQN----AKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 371 HIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDC-GDQLALAMQQIEAAGRGVLVYLR 429
HI++ + D + + + L R + L++ I + +R
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI--IAES-------IR 338
Query: 430 GHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGL----PVDSREYGIGAQMLRDLGV--- 482
N + D + E L P + R+ L V
Sbjct: 339 ---------DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM------FDRLSVFPP 383
Query: 483 ------RTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMG--HIY 534
+ L+ + K V ++ + K +K L K+ K I
Sbjct: 384 SAHIPTILLSLIWFDVIKSD------------VMVV--VNKLHKYSLVEKQPKESTISIP 429
Query: 535 GL 536
+
Sbjct: 430 SI 431
>2r5v_A PCZA361.1; dioxygenase, non-heme iron, vancomycin, oxidoreductase;
HET: HHH; 2.30A {Amycolatopsis orientalis}
Length = 357
Score = 30.5 bits (68), Expect = 1.3
Identities = 26/155 (16%), Positives = 44/155 (28%), Gaps = 21/155 (13%)
Query: 147 IRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPL 206
+RQG+ +V+ + + A A++ HG G+ ++M D+
Sbjct: 45 LRQGQVTLVLTEPTSDRH------------PAAAYLQTHGDGVADIAMATSDVAA----- 87
Query: 207 MVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPL 266
A + A T + V TL RD + PG +
Sbjct: 88 --AYEAAVRAGAEAVRAPGQHSEAAVTTATIGGFGDVVHTLIQRDGTSAEL-PPGFTGSM 144
Query: 267 KYREGGVLKRAGHTEASVDLAVLAG-FDPAAVLCE 300
G + + AG P E
Sbjct: 145 DVTNHGKGDVDLLGIDHFAICLNAGDLGPTVEYYE 179
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand
binding domain, transport protein; HET: GLU; 2.10A
{Nostoc punctiforme}
Length = 228
Score = 29.9 bits (68), Expect = 1.5
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 137 FSSIPEAIEDIRQGKFVVVVDDE-------DRENEGDLIMAAQLATPEAMAFIVKHGT 187
I EA + ++ K VV D E +G + + + E+ I+ + +
Sbjct: 137 VPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNS 194
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase;
2.50A {Porcine transmissible gastroenteritiscoronavirus}
Length = 211
Score = 30.1 bits (67), Expect = 1.6
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Query: 356 PFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCG 407
F CY + + +G GD + +L + ++ T I +A+C CG
Sbjct: 53 DFVNLCYAAT-------TLARGHSGDAEYLLELMLNDYSTAKIVLAAKCGCG 97
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR
{Escherichia coli K12} PDB: 2pq4_A
Length = 95
Score = 28.6 bits (64), Expect = 1.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 143 AIEDIRQGKFVVVVDDEDRENEGDLIMAAQ 172
A+ D G+ +VVV+ ED E I + +
Sbjct: 35 AVSDAPSGQLIVVVEAEDSETLIQTIESVR 64
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor,
NR1, ligand binding protein; 1.35A {Rattus norvegicus}
SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A*
1pb8_A 1pb9_A
Length = 292
Score = 30.0 bits (67), Expect = 1.7
Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 5/90 (5%)
Query: 103 DAIAFGALAADTAPTTFGFSSDDDEFDLDSPTEGFSSIPEAIEDIRQGKFVVVVDDE--- 159
D + + + F + + S EAI+ +R K + D
Sbjct: 169 DKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVL 228
Query: 160 --DRENEGDLIMAAQLATPEAMAFIVKHGT 187
+ + DL+ +L ++ +
Sbjct: 229 EFEASQKCDLVTTGELFFRSGFGIGMRKDS 258
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics,
GLUT seattle structural genomics center for infectious
disease; 2.40A {Burkholderia pseudomallei}
Length = 249
Score = 29.9 bits (68), Expect = 2.0
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 7/58 (12%)
Query: 137 FSSIPEAIEDIRQGKFVVVVDDE-------DRENEGDLIMAAQLATPEAMAFIVKHGT 187
F +I +A + G+ + D + E +G + +A + + G+
Sbjct: 157 FPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGS 214
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis
SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Length = 233
Score = 29.2 bits (66), Expect = 3.2
Identities = 8/58 (13%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 137 FSSIPEAIEDIRQGKFVVVVDDE-------DRENEGDLIMAAQLATPEAMAFIVKHGT 187
+++ AI +++ + V+ D + +L + + E F++K +
Sbjct: 141 TNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKENS 198
>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national
project on protei structural and functional analyses;
2.30A {Methanocaldococcus jannaschii}
Length = 83
Score = 26.8 bits (60), Expect = 4.7
Identities = 5/35 (14%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 142 EAIEDIRQGK-FVVVVDDEDRENEGDLI--MAAQL 173
+++++ K ++++ E+ E + + M +L
Sbjct: 32 NNVKEVQTYKMIDIIMEGENEEKVKEEVEEMCKKL 66
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic,
transport protein; 1.90A {Salmonella enterica} PDB:
3r39_A 4f3s_A
Length = 259
Score = 28.5 bits (64), Expect = 5.4
Identities = 6/57 (10%), Positives = 19/57 (33%), Gaps = 6/57 (10%)
Query: 137 FSSIPEAIEDIRQGKFVVVVDDE------DRENEGDLIMAAQLATPEAMAFIVKHGT 187
+ + E + D++ G + +E + + + + + K G+
Sbjct: 170 YPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQLGIAFKKGS 226
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann
fold, NAD binding, oxidoreductase; HET: NAP; 1.74A
{Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Length = 371
Score = 28.5 bits (64), Expect = 5.8
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
Query: 136 GFSSIPEAIEDIRQG-----KFVVVVDD 158
GF I + +E +R+G K VV ++
Sbjct: 335 GFDHIKQGMELVRKGELSGEKLVVRLEG 362
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH
domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Length = 630
Score = 28.6 bits (65), Expect = 6.7
Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 19/50 (38%)
Query: 242 TTVLT--LASRDSKPGDFNRPGHIFPL--KYRE---------GGVLKRAG 278
T V+ ++ P F PL YR+ L+R
Sbjct: 39 TAVMVTAVSKTKPSPSQF------MPLVVDYRQKAAAAGRIPTNYLRREV 82
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide,
complex (binding protein/peptide); 1.94A {Escherichia
coli} SCOP: c.94.1.1 PDB: 1ggg_A
Length = 226
Score = 27.9 bits (63), Expect = 8.0
Identities = 7/57 (12%), Positives = 13/57 (22%), Gaps = 7/57 (12%)
Query: 137 FSSIPEAIEDIRQGKFVVVVDDE-------DRENEGDLIMAAQLATPEAMAFIVKHG 186
F +I A ++ + V+ D G + G
Sbjct: 136 FPNIDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKG 192
>3bil_A Probable LACI-family transcriptional regulator; structural
genomics, unknown function, PSI-2, protein structure
initiative; 2.50A {Corynebacterium glutamicum atcc
13032}
Length = 348
Score = 27.9 bits (63), Expect = 8.4
Identities = 11/90 (12%), Positives = 27/90 (30%), Gaps = 17/90 (18%)
Query: 129 DLDSPTEGFSSIPEAIEDI--RQGKFVVVVD-DEDRENEGD------------LIMAAQL 173
L + F+++ I+ + G ++ + +ED +I
Sbjct: 75 SLINH--YFAAMVTEIQSTASKAGLATIITNSNEDATTMSGSLEFLTSHGVDGIICVPNE 132
Query: 174 ATPEAMAFIVKHGTGIVCVSMKGEDLERLD 203
+ + K G +V V + +
Sbjct: 133 ECANQLEDLQKQGMPVVLVDRELPGDSTIP 162
>2hay_A Putative NAD(P)H-flavin oxidoreductase; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
MSE FMN; 2.11A {Streptococcus pyogenes serotype M1}
Length = 224
Score = 27.9 bits (62), Expect = 8.5
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 151 KFVVVVDDEDRENEGDLIMAAQLATPEAMAFIV 183
+FVV+ + +E AQ A FI+
Sbjct: 55 RFVVLDNKPIKEEIKPFAWGAQYQLETASHFIL 87
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB
6.3.5.3), structural genomics, joint center for
structural JCSG; 1.90A {Thermotoga maritima} SCOP:
d.284.1.1 PDB: 3d54_B*
Length = 94
Score = 26.4 bits (59), Expect = 8.6
Identities = 7/33 (21%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 144 IEDIRQGK-FVVVVDDEDRENEGDLI--MAAQL 173
++ +R GK + V+ E++E +++ +L
Sbjct: 48 VKKLRLGKSIHLEVEAENKEKAYEIVKKACEEL 80
>3lic_A Sensor protein; PDC fold, ATP-binding, kinase, nucleotide-binding,
phosphopr transferase, transmembrane; 2.30A {Shewanella
oneidensis}
Length = 274
Score = 27.7 bits (61), Expect = 8.6
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 60 GVGKTRATLISGEGDLLAYPNGNNLVAESTGADDQLVGIELQPDAIAFGALAADTAPTTF 119
G+ +R ++ +G L+ + + ++A S+ + IAF L D
Sbjct: 177 GIAPSRLVVLDDQGRLIFHSDKEKVLAASSSGWLD----KQNIKNIAFATLLNDGQAGQA 232
Query: 120 GFSSDDDE 127
F D
Sbjct: 233 SFVDDKGT 240
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.385
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,777,379
Number of extensions: 585039
Number of successful extensions: 1660
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1638
Number of HSP's successfully gapped: 41
Length of query: 564
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 465
Effective length of database: 3,937,614
Effective search space: 1830990510
Effective search space used: 1830990510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)