RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 008469
(564 letters)
>d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Escherichia coli [TaxId:
562]}
Length = 209
Score = 246 bits (630), Expect = 1e-79
Identities = 101/203 (49%), Positives = 141/203 (69%), Gaps = 2/203 (0%)
Query: 137 FSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKG 196
F + A+ +R+G+ V+V+DDEDRENEGD+I A+ T E MA ++HG+GIVC+ +
Sbjct: 9 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITE 68
Query: 197 EDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGD 256
+ ++LDLP+M + N T FTVT++A G TTGVSA DR TTV + +KP D
Sbjct: 69 DRRKQLDLPMM--VENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSD 126
Query: 257 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLRE 316
NRPGH+FPL+ + GGVL R GHTEA++DL LAGF PA VLCE+ +DDG+MAR P+ E
Sbjct: 127 LNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIE 186
Query: 317 FAKRENLKIISIADLIRYRRKRD 339
FA + N+ +++I DL+ YR+ +
Sbjct: 187 FANKHNMALVTIEDLVAYRQAHE 209
>d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Magnaporthe grisea
[TaxId: 148305]}
Length = 216
Score = 241 bits (615), Expect = 4e-77
Identities = 90/217 (41%), Positives = 123/217 (56%), Gaps = 12/217 (5%)
Query: 137 FSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKG 196
F +IP+ I+ + G+FVVV+DD RENE DLI+AA+ T E MAF+V+H +G++C +
Sbjct: 1 FDAIPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTP 60
Query: 197 EDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGD 256
E LDLP MV + +V TTTG+SA DRA LA+ D++P
Sbjct: 61 ERTTALDLPQMVTHNADPRGTAYTVSVDA-EHPSTTTGISAHDRALACRMLAAPDAQPSH 119
Query: 257 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDG---------- 306
F RPGH+FPL+ GGV R GHTEA V+L LAG P AV+ E+VDD
Sbjct: 120 FRRPGHVFPLRAVAGGVRARRGHTEAGVELCRLAGKRPVAVISEIVDDGQEVEGRAVRAA 179
Query: 307 -SMARLPKLREFAKRENLKIISIADLIRYRRKRDKLV 342
M R + FA+R LK+ +I D+I + K + +
Sbjct: 180 PGMLRGDECVAFARRWGLKVCTIEDMIAHVEKTEGKL 216
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Archaeon
Methanocaldococcus jannaschii [TaxId: 2190]}
Length = 219
Score = 239 bits (611), Expect = 1e-76
Identities = 63/218 (28%), Positives = 114/218 (52%), Gaps = 23/218 (10%)
Query: 139 SIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGED 198
++ +AIE +++G+ ++V D ++RE E D+++A+Q TPE + + K G++C ++ +
Sbjct: 2 NVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDI 61
Query: 199 LERLDLPLMVAQKE----------------NDEKLCTAFTVTVDAKHGTTTGVSARDRAT 242
+L +P MV E ++F++T++ + T TG++ DRA
Sbjct: 62 CNKLGIPFMVDILEFASQKFKVLRELYPNDIPYDEKSSFSITINHR-KTFTGITDNDRAF 120
Query: 243 TVLTLAS------RDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAA 296
T+ LA + +F PG + L+ EG V R GHTE +V LA LA P
Sbjct: 121 TIKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAEGLVKNRQGHTEMTVALAELANLVPIT 180
Query: 297 VLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRY 334
+CE++ DDG+ + + +A++ NL +S ++I Y
Sbjct: 181 TICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINY 218
>d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Candida albicans [TaxId:
5476]}
Length = 202
Score = 235 bits (601), Expect = 2e-75
Identities = 103/202 (50%), Positives = 140/202 (69%), Gaps = 3/202 (1%)
Query: 137 FSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKG 196
F+ I EA+E + G+F++V+DDEDRENEGDLIMAA+L T E MAF+V++ +G VCV +
Sbjct: 3 FTPIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVPLSE 62
Query: 197 EDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGD 256
E +L+LP M+A ++ TA+T+T D GTTTG+SA DRA T +LA+ +SKP D
Sbjct: 63 ERANQLELPPMLAN--RSDRHGTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSKPQD 120
Query: 257 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVV-DDDGSMARLPKLR 315
F +PGHI PL+ G + KR GHTEA+V L+ LAG PA V+CE+V D+DG M RL
Sbjct: 121 FIKPGHILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPAGVICELVRDEDGLMMRLDDCI 180
Query: 316 EFAKRENLKIISIADLIRYRRK 337
+F K+ +KII+I L+ Y K
Sbjct: 181 QFGKKHGIKIININQLVEYISK 202
>d2bz1a1 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA
{Escherichia coli [TaxId: 562]}
Length = 174
Score = 194 bits (493), Expect = 9e-60
Identities = 84/171 (49%), Positives = 109/171 (63%), Gaps = 1/171 (0%)
Query: 342 VDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGS 401
+ R + A++PT WG F + + G +H+A+V GDI +L RVHSECLTGD S
Sbjct: 3 LKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFS 62
Query: 402 ARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEEL 461
RCDCG QL A+ QI GRG+L+Y R EGR IGL +K+RAY LQD G DTVEAN +L
Sbjct: 63 LRCDCGFQLEAALTQIAEEGRGILLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQL 121
Query: 462 GLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLI 512
G D R++ + A M + LGV ++L+TNNP K L G+ + RVPLI
Sbjct: 122 GFAADERDFTLCADMFKLLGVNEVRLLTNNPKKVEILTEAGINIVERVPLI 172
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 32.4 bits (73), Expect = 0.13
Identities = 32/226 (14%), Positives = 58/226 (25%), Gaps = 30/226 (13%)
Query: 308 MARLPKLREFAKRENLKII-------SIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAY 360
MA + + E A +KI A I+ + + V +
Sbjct: 194 MANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTM 253
Query: 361 CYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAA 420
+ + D V G A D A+A+ EA
Sbjct: 254 SGKKDCLVNIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDM---EAMAIGLREAM 310
Query: 421 GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSRE----------- 469
+ + + L++ G VE + +D+R
Sbjct: 311 QYEYIEHRVKQ--------VRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFP 362
Query: 470 -YGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITP 514
+ A + + GVR+M+ + + V L P
Sbjct: 363 AQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIP 408
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli
[TaxId: 562]}
Length = 385
Score = 31.9 bits (71), Expect = 0.20
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 438 LGHKLRAYNLQDDGRDTVEA----NEELGLPVDSREYGIGAQMLRDLGVRTMK--LMTNN 491
+G K+ +L++ VEA N ++G+P R+ G+ + + L + N
Sbjct: 306 MGVKVEGMSLEEARNAAVEAVFALNRDVGIPPHLRDVGVRKEDIPALAQAALDDVCTGGN 365
Query: 492 P 492
P
Sbjct: 366 P 366
>d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima
[TaxId: 2336]}
Length = 364
Score = 30.0 bits (66), Expect = 0.83
Identities = 27/153 (17%), Positives = 46/153 (30%), Gaps = 10/153 (6%)
Query: 347 AARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDC 406
R+ +M A L +E+ + K + + + G
Sbjct: 190 TGRLGSMTAYALARLCYETL--LEYGVLAKRSVEEKSVTPALEKIVEANTLLSGLGFESG 247
Query: 407 GDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEA-NEELGLPV 465
G A A+ YL G IG+ L + + V + EE+GLP
Sbjct: 248 GLAAAHAIHNGLTVLENTHKYLHGE-KVAIGVLASLFLTDKPRKMIEEVYSFCEEVGLPT 306
Query: 466 DSREYGIGA---QMLRDLGVRTMK---LMTNNP 492
E G+ + L + + + N P
Sbjct: 307 TLAEIGLDGVSDEDLMKVAEKACDKNETIHNEP 339
>d1p99a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family)
{Staphylococcus aureus [TaxId: 1280]}
Length = 255
Score = 29.3 bits (65), Expect = 1.1
Identities = 19/139 (13%), Positives = 45/139 (32%), Gaps = 4/139 (2%)
Query: 65 RATLISGEGDLLAYPNGNNLVAESTGADDQLVGIELQPDAIAFGALAADTAPTTFGFSSD 124
+ +G L V + T L + A D A G ++
Sbjct: 115 KLLEAAGLIKLKKDFGLAGTVKDITSNPKHLKITAVDAQQTARALSDVDIAVINNGVATK 174
Query: 125 DDEFDLDSPTEGFSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVK 184
D + + ++ +V V+D+D +N+ + + EA + +
Sbjct: 175 ---AGKDPKNDPIFLEKSNSDAVKPYINIVAVNDKDLDNKTYAKIVELYHSKEAQKALQE 231
Query: 185 H-GTGIVCVSMKGEDLERL 202
G V++ ++++ +
Sbjct: 232 DVKDGEKPVNLSKDEIKAI 250
>d2ns1b1 d.58.5.1 (B:1-112) PII-homolog GlnK {Shigella flexneri
[TaxId: 623]}
Length = 112
Score = 27.9 bits (62), Expect = 1.3
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 134 TEGFSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVS 193
E + ++ + + K V + D+ + D++ A A+ K G G + V+
Sbjct: 43 AELYRGAEFSVNFLPKVKIDVAIADDQLDEVIDIVSKA--------AYTGKIGDGKIFVA 94
>d1oj7a_ e.22.1.2 (A:) Hypothetical oxidoreductase yqhD {Escherichia
coli [TaxId: 562]}
Length = 390
Score = 28.5 bits (62), Expect = 2.4
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 458 NEELGLPVDSREYGIGAQMLRDLGVRTMK---LMTNNP 492
E+LG+P +YG+ + L + +
Sbjct: 337 FEQLGVPTHLSDYGLDGSSIPALLKKLEEHGMTQLGEN 374
>d1sj7a1 a.215.1.1 (A:488-654) A middle domain of Talin 1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 167
Score = 27.8 bits (62), Expect = 2.7
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 108 GALAADTAPTTFGFSSDDDEFDLDSPTEGFSSIPEAIEDIRQG-KFVVVVDDEDRENEGD 166
A+ A TA + D E D + ++I + ++ +G K + + +++ N
Sbjct: 61 DAITAGTASVVNLTAGDPAETDYTAVGCAVTTISSNLTEMSRGVKLLAALLEDEGGNGRP 120
Query: 167 LIMAAQ 172
L+ AA+
Sbjct: 121 LLQAAK 126
>d1p5dx2 c.84.1.1 (X:155-258) Phosphomannomutase/phosphoglucomutase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 104
Score = 26.6 bits (58), Expect = 3.3
Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 3/88 (3%)
Query: 221 FTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHT 280
V VD +G ++ + ++ + D N P H E LK
Sbjct: 19 MKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEV-DGNFPNHHPDPGKPE--NLKDLIAK 75
Query: 281 EASVDLAVLAGFDPAAVLCEVVDDDGSM 308
+ + + FD VV + G++
Sbjct: 76 VKAENADLGLAFDGDGDRVGVVTNTGTI 103
>d1vfja_ d.58.5.1 (A:) PII (product of glnB) {Thermus thermophilus
[TaxId: 274]}
Length = 116
Score = 26.3 bits (58), Expect = 5.2
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 8/60 (13%)
Query: 134 TEGFSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVS 193
E + +E + + + V + + + I+ A A + G G + V
Sbjct: 43 VETYRGTTVKMELHEKVRLEIGVSEPFVKPTVEAILKA--------ARTGEVGDGKIFVL 94
>d1t1ua1 c.43.1.3 (A:20-401) Choline O-acetyltransferase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 382
Score = 27.3 bits (60), Expect = 5.8
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 142 EAIEDIRQGKFVVVVDDEDRENEGDLIMAAQL 173
++++ I + +V +D D A QL
Sbjct: 249 DSLDMIERCICLVCLDGPGTGELSDTHRALQL 280
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A
(TM0820) {Thermotoga maritima [TaxId: 2336]}
Length = 398
Score = 27.3 bits (59), Expect = 5.9
Identities = 9/58 (15%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 443 RAYNLQDDGRDTVEA--------NEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNP 492
+ + + +G + + +++G PV ++ GI + + + M L+ N
Sbjct: 314 KIFGFEGEGEELILKGIEAFKNWLKKVGAPVSLKDAGIPEEDIDKIVDNVMLLVEKNL 371
>d1qy7a_ d.58.5.1 (A:) PII (product of glnB) {Cyanobacteria
(Synechococcus sp.) pcc 7942 [TaxId: 1131]}
Length = 112
Score = 25.9 bits (57), Expect = 6.6
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 134 TEGFSSIPEAIEDIRQGKFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVS 193
TE + +E +++ K +VV+D + D I+AA A + G G + VS
Sbjct: 43 TERYRGAEYTVEFLQKLKLEIVVEDAQVDTVIDKIVAA--------ARTGEIGDGKIFVS 94
>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 366
Score = 26.4 bits (57), Expect = 9.8
Identities = 21/138 (15%), Positives = 34/138 (24%), Gaps = 1/138 (0%)
Query: 343 DRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSA 402
++ A IPT+ A L +A L V G
Sbjct: 188 GKTMAGGIPTIAAEAIAEKCEQTLFKYGKLAYESVKAKVVTPALEAVVEANTLLSGLGFE 247
Query: 403 RCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELG 462
A+ G + G + L + Q + +E L
Sbjct: 248 SGGLAAAHAIHNGFTALEGEIHHLTHGEKVAFGTLVQLALE-EHSQQEIERYIELYLCLD 306
Query: 463 LPVDSREYGIGAQMLRDL 480
LPV + + D+
Sbjct: 307 LPVTLEDIKLKDASREDI 324
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.135 0.385
Gapped
Lambda K H
0.267 0.0618 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,036,547
Number of extensions: 98677
Number of successful extensions: 251
Number of sequences better than 10.0: 1
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 22
Length of query: 564
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 474
Effective length of database: 1,171,896
Effective search space: 555478704
Effective search space used: 555478704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.2 bits)