BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008470
(564 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6H1H2|GPMI_FLAPJ 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC
49511) GN=gpmI PE=3 SV=1
Length = 505
Score = 36.6 bits (83), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 34/192 (17%)
Query: 186 YISYSNVSFTLEEVKHLWRRNGCLKKYGRHL------VMRIDDFEKPPQTNVLCSNWRKW 239
Y++ +N T + VK ++ ++ + G L +RI + EK P S R
Sbjct: 287 YVTLTNYDETYKNVKVIYNKDNITQTLGEVLEKAGKKQIRIAETEKYPHVTFFFSGGR-- 344
Query: 240 EQPIIWFQGTTDAVAAQFFLKNVHPEMRNAANDLFGHPESLHAQPNVFG-ELMRVLISPS 298
EQP + LKN P++ A DL QP + EL LI
Sbjct: 345 EQPFL---------GESRILKN-SPKV--ATYDL---------QPEMSAYELTEALIPEI 383
Query: 299 EDVEEAVKWVLGNGVDPDISLHMRMLTNRSVRAVQAAVKCIRKVVNSLNLTSRPKTVIVS 358
E E ++ N + D+ H +++ +++A QA KC+ KV+ + L T++++
Sbjct: 384 EKTE--ADFICLNFANGDMVGHTGIMS-AAIKACQAVNKCVEKVITAA-LAHNYTTIVIA 439
Query: 359 DTPSFAKTITPN 370
D + I P+
Sbjct: 440 DHGNCETMINPD 451
>sp|Q67SW0|GPMI_SYMTH 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Symbiobacterium thermophilum (strain T / IAM 14863)
GN=gpmI PE=3 SV=1
Length = 517
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 23/133 (17%)
Query: 275 GHPESLHAQPNVFGELMRVLISPSEDVEEAVKWV--------LGNGVDPDISLHMRMLTN 326
G L P V ++ +S E EAVKW+ + N +PD+ H +L
Sbjct: 352 GEERVLVPSPKVATYDLKPEMSAYEVAREAVKWIEEDRTDFIVLNFANPDMVGHTGVL-E 410
Query: 327 RSVRAVQAAVKCIRKVVNSLNLTSRPKTVIVSDTPSFAKTITPNISEFAEVLYFDYKAFR 386
++RAV+A +C+ +VV++L L VI++D + + + DY+
Sbjct: 411 AAIRAVEAVDECLGQVVDAL-LAKGGAAVIIADHGNCDQMV-------------DYETGA 456
Query: 387 GNISHDVNRLPSL 399
+ +H +N +P +
Sbjct: 457 PHTNHTLNPVPCI 469
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3
Length = 4836
Score = 33.9 bits (76), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 28/41 (68%)
Query: 43 TPPNTSADVFLPVENDVDSSQLLEETETETESESESETKTS 83
+ P+ S+ F+PV +D ++ ++ ET T+T+ + ES+ KTS
Sbjct: 3489 SAPSASSRPFIPVTDDPGAASIIAETMTKTKEDVESQNKTS 3529
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2
Length = 4834
Score = 33.9 bits (76), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 28/41 (68%)
Query: 43 TPPNTSADVFLPVENDVDSSQLLEETETETESESESETKTS 83
+ P+ SA F+PV +D+ ++ ++ ET T+T+ + ES+ K +
Sbjct: 3487 SAPSASARPFIPVTDDLGAASIIAETMTKTKEDVESQNKAA 3527
>sp|P58815|MCRX_METTM Methyl-coenzyme M reductase II subunit alpha OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=mrtA PE=1 SV=2
Length = 553
Score = 33.1 bits (74), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 373 EFAEVLYFDYKAFRGNISHDVNRLPSLEFRAKDWGPAPRWVAF 415
EF E K++ GN ++ VNR+P++ R D G RW A
Sbjct: 190 EFPEEQAEQLKSYIGNRTYQVNRVPTIVVRTCDGGTVSRWSAM 232
>sp|Q9VH78|ALG12_DROME Probable Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol
alpha-1,6-mannosyltransferase OS=Drosophila melanogaster
GN=CG8412 PE=2 SV=1
Length = 678
Score = 33.1 bits (74), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 45 PNTSADVFLPVENDVDSSQLLEETETETESESESETKTSTVSNPKRCATVEEM-----GE 99
P + + + ++D +EE E E+++E T+ P + +E+ G+
Sbjct: 519 PKMKSRLQVDADDDDGIVSTVEEMSLELETDTEPHAGAETIETPLKEINFQELRTLALGQ 578
Query: 100 DFKGSIQEESLKVRKLIQRHFDLNG 124
K S +K+R++I++H+ G
Sbjct: 579 ATKKSRAATKMKIRQIIEQHYRAKG 603
>sp|P21110|MCRX_METTH Methyl-coenzyme M reductase II subunit alpha OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=mrtA PE=1 SV=3
Length = 553
Score = 33.1 bits (74), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 373 EFAEVLYFDYKAFRGNISHDVNRLPSLEFRAKDWGPAPRWVAF 415
EF E K++ GN ++ VNR+P++ R D G RW A
Sbjct: 190 EFPEEQAEQLKSYIGNRTYQVNRVPTIVVRTCDGGTVSRWSAM 232
>sp|A6USZ9|SYD_META3 Aspartate--tRNA ligase OS=Methanococcus aeolicus (strain Nankai-3 /
ATCC BAA-1280) GN=aspS PE=3 SV=1
Length = 438
Score = 33.1 bits (74), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 314 DPDISLHMRMLTNRSVRAVQAAVKCIRKVVNSLNLTSRPKTVIVSDTPSFAKTITPNISE 373
D D L R L R + +Q+ K +V+ S+ T I DTP + T +E
Sbjct: 122 DIDTRLDKRFLDLRRPK-IQSLFKLRSEVLKSIRNTFHDNGFIDVDTPKLVASATEGGTE 180
Query: 374 FAEVLYFDYKAFRGN 388
+ YFD +AF G
Sbjct: 181 LFPISYFDKEAFLGQ 195
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 207,174,739
Number of Sequences: 539616
Number of extensions: 8595208
Number of successful extensions: 24388
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 24334
Number of HSP's gapped (non-prelim): 53
length of query: 564
length of database: 191,569,459
effective HSP length: 123
effective length of query: 441
effective length of database: 125,196,691
effective search space: 55211740731
effective search space used: 55211740731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)