Query 008470
Match_columns 564
No_of_seqs 20 out of 22
Neff 2.2
Searched_HMMs 46136
Date Thu Mar 28 12:34:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008470.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008470hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10250 O-FucT: GDP-fucose pr 97.4 0.00017 3.6E-09 69.6 4.3 261 150-453 9-344 (351)
2 PF01531 Glyco_transf_11: Glyc 91.2 0.89 1.9E-05 44.9 8.0 99 313-448 162-266 (298)
3 PF03254 XG_FTase: Xyloglucan 75.0 45 0.00097 36.9 12.4 280 135-448 109-436 (476)
4 PF00106 adh_short: short chai 56.3 6.7 0.00015 33.3 1.6 23 425-447 1-23 (167)
5 COG0300 DltE Short-chain dehyd 55.0 7.2 0.00016 39.5 1.8 25 422-446 4-28 (265)
6 PRK06484 short chain dehydroge 51.1 21 0.00045 36.7 4.4 24 423-446 268-291 (520)
7 cd00355 Ribosomal_L30_like Rib 49.7 21 0.00045 27.8 3.2 30 339-368 15-44 (53)
8 TIGR00109 hemH ferrochelatase. 49.7 1.7E+02 0.0038 29.9 10.5 92 264-361 20-128 (322)
9 smart00718 DM4_12 DM4/DM12 fam 48.7 13 0.00028 32.1 2.2 17 282-298 41-57 (95)
10 PF05830 NodZ: Nodulation prot 45.1 28 0.00062 36.8 4.3 259 141-445 4-295 (321)
11 PRK06935 2-deoxy-D-gluconate 3 44.7 15 0.00032 33.9 2.0 32 415-446 3-37 (258)
12 PF13646 HEAT_2: HEAT repeats; 38.4 33 0.00072 26.5 2.8 64 255-322 5-68 (88)
13 PF07841 DM4_12: DM4/DM12 fami 37.3 20 0.00042 29.6 1.4 22 282-303 37-58 (82)
14 cd01658 Ribosomal_L30 Ribosoma 37.2 41 0.00089 26.6 3.1 30 339-368 16-45 (54)
15 PRK13800 putative oxidoreducta 37.0 1.1E+02 0.0024 35.3 7.6 84 255-341 780-864 (897)
16 PRK08339 short chain dehydroge 36.4 22 0.00048 33.4 1.8 24 424-447 8-31 (263)
17 PRK09687 putative lyase; Provi 35.8 1E+02 0.0023 30.8 6.5 65 257-323 166-230 (280)
18 cd03411 Ferrochelatase_N Ferro 35.2 2.2E+02 0.0048 26.0 7.9 51 264-315 15-65 (159)
19 PRK13800 putative oxidoreducta 35.0 1E+02 0.0022 35.4 7.0 78 255-339 689-766 (897)
20 TIGR01829 AcAcCoA_reduct aceto 34.8 25 0.00055 31.4 1.8 23 425-447 1-23 (242)
21 PRK06300 enoyl-(acyl carrier p 34.8 24 0.00052 35.3 1.8 27 423-449 7-35 (299)
22 KOG2564 Predicted acetyltransf 34.4 19 0.00041 38.2 1.1 52 250-312 156-217 (343)
23 PRK07677 short chain dehydroge 33.0 28 0.00061 32.0 1.9 22 425-446 2-23 (252)
24 TIGR01308 rpmD_bact ribosomal 32.4 54 0.0012 26.3 3.1 30 339-368 16-45 (55)
25 PF10237 N6-adenineMlase: Prob 32.1 55 0.0012 31.0 3.6 45 336-382 12-56 (162)
26 KOG1200 Mitochondrial/plastidi 31.9 27 0.00058 35.8 1.7 23 423-445 13-35 (256)
27 PRK09009 C factor cell-cell si 31.7 30 0.00065 31.2 1.8 23 425-447 1-23 (235)
28 COG0503 Apt Adenine/guanine ph 31.3 24 0.00053 33.2 1.2 66 159-229 66-131 (179)
29 PRK06603 enoyl-(acyl carrier p 30.8 32 0.00069 32.4 1.9 23 424-446 8-32 (260)
30 PLN02780 ketoreductase/ oxidor 30.8 29 0.00063 34.4 1.7 23 424-446 53-75 (320)
31 PRK05693 short chain dehydroge 30.5 31 0.00066 32.2 1.7 22 425-446 2-23 (274)
32 PRK09219 xanthine phosphoribos 30.0 27 0.00058 33.4 1.2 40 158-197 62-102 (189)
33 PRK07904 short chain dehydroge 29.6 32 0.0007 32.3 1.7 25 423-447 7-31 (253)
34 cd00411 Asparaginase Asparagin 29.6 58 0.0013 33.3 3.6 40 413-453 95-138 (323)
35 PRK12747 short chain dehydroge 28.7 37 0.0008 31.1 1.9 24 424-447 4-27 (252)
36 KOG3517 Transcription factor P 28.1 70 0.0015 33.7 3.9 58 297-369 22-89 (334)
37 KOG1014 17 beta-hydroxysteroid 28.0 29 0.00063 36.5 1.2 20 425-444 50-69 (312)
38 PRK06079 enoyl-(acyl carrier p 27.8 39 0.00083 31.6 1.9 23 424-446 7-31 (252)
39 PF02985 HEAT: HEAT repeat; I 27.8 85 0.0018 21.5 3.1 24 322-345 7-30 (31)
40 PRK08936 glucose-1-dehydrogena 27.3 39 0.00084 31.3 1.8 25 423-447 6-30 (261)
41 PRK08416 7-alpha-hydroxysteroi 27.2 38 0.00082 31.5 1.7 23 424-446 8-30 (260)
42 PRK08267 short chain dehydroge 26.7 40 0.00087 31.0 1.8 22 425-446 2-23 (260)
43 PF12835 Integrase_1: Integras 26.7 56 0.0012 31.1 2.8 73 295-370 14-100 (187)
44 PRK08261 fabG 3-ketoacyl-(acyl 26.7 1.3E+02 0.0029 30.7 5.6 22 424-445 210-231 (450)
45 PRK12481 2-deoxy-D-gluconate 3 26.6 40 0.00086 31.4 1.7 23 424-446 8-30 (251)
46 cd06380 PBP1_iGluR_AMPA N-term 26.5 3.3E+02 0.0071 26.9 8.0 74 299-382 11-92 (382)
47 PF03414 Glyco_transf_6: Glyco 26.4 41 0.00088 35.8 1.9 52 194-254 38-89 (337)
48 PRK05993 short chain dehydroge 26.3 40 0.00086 31.9 1.7 23 424-446 4-26 (277)
49 PRK05611 rpmD 50S ribosomal pr 26.2 79 0.0017 25.6 3.1 30 339-368 19-48 (59)
50 PRK08703 short chain dehydroge 26.1 44 0.00095 30.4 1.9 23 424-446 6-28 (239)
51 PRK07791 short chain dehydroge 25.8 41 0.0009 32.2 1.7 23 424-446 6-28 (286)
52 PF00327 Ribosomal_L30: Riboso 25.7 95 0.0021 24.0 3.4 30 339-368 17-46 (52)
53 PRK07856 short chain dehydroge 25.4 44 0.00094 30.7 1.7 23 424-446 6-28 (252)
54 PF13513 HEAT_EZ: HEAT-like re 25.4 14 0.00031 27.3 -1.2 45 264-310 1-53 (55)
55 COG1841 RpmD Ribosomal protein 25.2 80 0.0017 25.7 2.9 29 339-367 16-44 (55)
56 PRK12823 benD 1,6-dihydroxycyc 25.1 46 0.00099 30.6 1.8 22 424-445 8-29 (260)
57 PF08665 PglZ: PglZ domain; I 25.0 77 0.0017 29.3 3.3 46 314-360 121-172 (181)
58 PRK07102 short chain dehydroge 24.7 43 0.00094 30.5 1.6 22 425-446 2-23 (243)
59 PRK07985 oxidoreductase; Provi 24.6 48 0.001 32.0 1.9 23 424-446 49-71 (294)
60 KOG1205 Predicted dehydrogenas 24.4 1.6E+02 0.0035 30.4 5.7 182 238-437 9-243 (282)
61 PRK12429 3-hydroxybutyrate deh 24.4 1.3E+02 0.0027 27.3 4.4 67 296-362 63-143 (258)
62 PRK06505 enoyl-(acyl carrier p 24.3 48 0.001 31.7 1.8 23 424-446 7-31 (271)
63 PF00790 VHS: VHS domain; Int 24.3 62 0.0013 28.9 2.4 57 296-356 1-60 (140)
64 PLN02730 enoyl-[acyl-carrier-p 24.2 34 0.00073 34.4 0.8 27 423-449 8-36 (303)
65 PRK06057 short chain dehydroge 24.1 48 0.001 30.5 1.8 23 425-447 8-30 (255)
66 PRK09291 short chain dehydroge 24.1 48 0.001 30.2 1.7 22 425-446 3-24 (257)
67 PRK07577 short chain dehydroge 24.0 1.7E+02 0.0036 26.3 5.1 63 298-361 53-129 (234)
68 PRK07792 fabG 3-ketoacyl-(acyl 24.0 47 0.001 32.3 1.8 24 424-447 12-35 (306)
69 KOG4095 Uncharacterized conser 23.9 44 0.00095 32.6 1.5 38 324-361 1-42 (165)
70 PRK07533 enoyl-(acyl carrier p 23.4 52 0.0011 30.8 1.9 24 424-447 10-35 (258)
71 PRK06483 dihydromonapterin red 23.2 51 0.0011 29.9 1.7 22 425-446 3-24 (236)
72 PRK08415 enoyl-(acyl carrier p 23.1 52 0.0011 31.7 1.8 24 423-446 4-29 (274)
73 PRK06463 fabG 3-ketoacyl-(acyl 23.1 53 0.0011 30.3 1.8 23 424-446 7-29 (255)
74 PRK12367 short chain dehydroge 23.1 49 0.0011 31.5 1.7 22 424-445 14-35 (245)
75 PRK12745 3-ketoacyl-(acyl-carr 22.6 53 0.0011 29.9 1.7 23 425-447 3-25 (256)
76 PRK08177 short chain dehydroge 22.4 55 0.0012 29.7 1.8 23 425-447 2-24 (225)
77 PF08967 DUF1884: Domain of un 22.3 77 0.0017 28.3 2.6 29 288-320 5-33 (85)
78 PRK08993 2-deoxy-D-gluconate 3 22.2 55 0.0012 30.3 1.8 24 424-447 10-33 (253)
79 PF06470 SMC_hinge: SMC protei 22.1 60 0.0013 26.9 1.8 49 283-343 1-49 (120)
80 PRK07478 short chain dehydroge 22.0 57 0.0012 29.9 1.8 23 424-446 6-28 (254)
81 PRK12938 acetyacetyl-CoA reduc 21.9 57 0.0012 29.6 1.8 23 425-447 4-26 (246)
82 PRK07062 short chain dehydroge 21.8 57 0.0012 30.1 1.8 24 423-446 7-30 (265)
83 PTZ00397 macrophage migration 21.8 74 0.0016 27.4 2.4 88 259-362 17-105 (116)
84 PF09292 Neil1-DNA_bind: Endon 21.6 42 0.0009 26.3 0.7 12 243-254 27-38 (39)
85 TIGR00326 eubact_ribD riboflav 21.6 2E+02 0.0044 29.4 5.7 99 426-555 30-137 (344)
86 PRK06523 short chain dehydroge 21.5 63 0.0014 29.7 2.0 23 424-446 9-31 (260)
87 TIGR01963 PHB_DH 3-hydroxybuty 21.2 2.1E+02 0.0046 25.9 5.2 67 294-360 58-138 (255)
88 PF13245 AAA_19: Part of AAA d 21.1 1.6E+02 0.0034 24.3 4.0 37 334-371 26-62 (76)
89 PF14851 FAM176: FAM176 family 21.1 5E+02 0.011 25.1 7.8 20 106-125 121-140 (153)
90 cd00268 DEADc DEAD-box helicas 21.1 2.6E+02 0.0056 25.0 5.7 83 286-375 10-93 (203)
91 PRK12825 fabG 3-ketoacyl-(acyl 21.1 2.3E+02 0.0049 25.2 5.3 68 295-362 65-146 (249)
92 TIGR01832 kduD 2-deoxy-D-gluco 20.9 62 0.0013 29.4 1.8 24 423-446 4-27 (248)
93 PRK06550 fabG 3-ketoacyl-(acyl 20.9 62 0.0013 29.2 1.8 23 424-446 5-27 (235)
94 PRK06123 short chain dehydroge 20.9 61 0.0013 29.3 1.7 22 425-446 3-24 (248)
95 PRK08303 short chain dehydroge 20.8 58 0.0013 32.1 1.7 23 424-446 8-30 (305)
96 PRK05876 short chain dehydroge 20.8 62 0.0013 30.9 1.8 23 424-446 6-28 (275)
97 PRK05867 short chain dehydroge 20.8 61 0.0013 29.8 1.7 25 423-447 8-32 (253)
98 PRK07024 short chain dehydroge 20.7 59 0.0013 30.1 1.6 22 425-446 3-24 (257)
99 PRK07063 short chain dehydroge 20.6 63 0.0014 29.8 1.8 23 424-446 7-29 (260)
100 TIGR02685 pter_reduc_Leis pter 20.5 66 0.0014 30.0 1.9 23 424-446 1-23 (267)
101 PF03932 CutC: CutC family; I 20.3 1.1E+02 0.0024 30.0 3.5 36 522-557 74-115 (201)
102 PRK08265 short chain dehydroge 20.3 64 0.0014 30.1 1.8 23 424-446 6-28 (261)
103 PRK06124 gluconate 5-dehydroge 20.3 65 0.0014 29.5 1.8 23 423-445 10-32 (256)
104 PRK07825 short chain dehydroge 20.2 63 0.0014 30.1 1.7 22 425-446 6-27 (273)
105 PRK06841 short chain dehydroge 20.2 1.9E+02 0.0041 26.4 4.8 69 295-363 70-152 (255)
106 PRK06138 short chain dehydroge 20.2 2.1E+02 0.0045 26.0 4.9 69 295-363 62-144 (252)
107 TIGR01289 LPOR light-dependent 20.2 62 0.0014 31.7 1.8 23 424-446 3-25 (314)
108 PRK05854 short chain dehydroge 20.2 62 0.0013 31.7 1.7 23 424-446 14-36 (313)
109 PRK08690 enoyl-(acyl carrier p 20.2 65 0.0014 30.3 1.8 23 424-446 6-30 (261)
110 PRK09687 putative lyase; Provi 20.1 3.3E+02 0.0071 27.4 6.7 113 255-381 96-211 (280)
111 PRK08589 short chain dehydroge 20.1 64 0.0014 30.4 1.8 23 424-446 6-28 (272)
112 PRK12384 sorbitol-6-phosphate 20.1 64 0.0014 29.6 1.7 24 424-447 2-25 (259)
113 PRK06947 glucose-1-dehydrogena 20.0 67 0.0015 29.2 1.8 22 425-446 3-24 (248)
114 PF03764 EFG_IV: Elongation fa 20.0 2.1E+02 0.0046 24.4 4.7 45 299-345 62-118 (120)
115 PRK06200 2,3-dihydroxy-2,3-dih 20.0 64 0.0014 29.9 1.7 23 424-446 6-28 (263)
No 1
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=97.38 E-value=0.00017 Score=69.56 Aligned_cols=261 Identities=22% Similarity=0.278 Sum_probs=115.8
Q ss_pred CcchhHHHHHHHHHHHHhhccceeeecccCCCCCCcc-----------eeeecceeeHHHHHHHHHHhCchhhcCCceee
Q 008470 150 GFGNEMYKILTGAALSVMLNRSLIIGQTRGKYPFGEY-----------ISYSNVSFTLEEVKHLWRRNGCLKKYGRHLVM 218 (564)
Q Consensus 150 GFGNeMYKiLTaAaLsiMLNRSLIIgqtrg~yPFGdY-----------Isysn~sFT~~EvKHLWr~~~C~~kYgR~L~m 218 (564)
||+|-+-=+..|++++.+|||.||+ |||... |.|++ -|.++.+ .+|-++ ++
T Consensus 9 GfnNQr~~~~~a~~~A~~LnRTLVL------Pp~~~~~~~~~~~~~~~ipf~~-~fD~~~l----------~~~~~~-vi 70 (351)
T PF10250_consen 9 GFNNQRMGFENAVVFAKALNRTLVL------PPFIKHYHWKDQSKQRHIPFSD-FFDVEHL----------RKFLRP-VI 70 (351)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-EEE--------EEEEESSSS----EEEEEHHH-HB-HHHH----------TTTS---EE
T ss_pred CHHHHHHHHHHHHHHHHHhCCEEEc------CCccccccccccccccccChhh-hccHHHH----------HHHhhC-ce
Confidence 9999999999999999999999998 444431 22333 4555443 222221 45
Q ss_pred eeccCCC---CCC-------ccccccCccc---cccceEEeccCcc--------hHHhHHHhhccCHHHHHH------HH
Q 008470 219 RIDDFEK---PPQ-------TNVLCSNWRK---WEQPIIWFQGTTD--------AVAAQFFLKNVHPEMRNA------AN 271 (564)
Q Consensus 219 R~Ddfek---P~~-------TNvLCsdW~~---w~qpIIWF~GTtD--------aVa~QffLKNvhp~Mr~A------A~ 271 (564)
.+.+|.. +.. ...-|.+|.+ =..|.-||.+... .....+.+++++|..+.- -.
T Consensus 71 ~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (351)
T PF10250_consen 71 TMEEFLPKHWDEVFRLQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPV 150 (351)
T ss_dssp -HHHHHHHHS-GGG-EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SE
T ss_pred ehheeccchhccccchhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhcccccccc
Confidence 5555531 111 1122333332 1112222222211 122334567777777664 23
Q ss_pred hhcCCCCCCCCCCchHHHhHHHhcCCchhHHHHHhhhh---cCCCCCCceehhhhhccc--------------chH----
Q 008470 272 DLFGHPESLHAQPNVFGELMRVLISPSEDVEEAVKWVL---GNGVDPDISLHMRMLTNR--------------SVR---- 330 (564)
Q Consensus 272 ~LfG~p~~l~sRpN~FGELmr~~ISPs~dV~~AV~W~l---~gg~~PDIslHmRMl~nR--------------s~r---- 330 (564)
..|.....+-. -+..+.-++..+-++++|+++++=.+ ..+..|=|++|+|.-..= +.|
T Consensus 151 i~~~~~~~~~~-~~~~~~~~~r~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~~~~C~~~~~~~~~~~~~~~~~ 229 (351)
T PF10250_consen 151 IAFTGFESRLP-DNYLDRDLQRYLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDWFSACEFKGERHLLASPRCWGK 229 (351)
T ss_dssp EEESS-SS-SS---GGGGGGGGG--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHHHHHHCT-T----TTTHHHH-G
T ss_pred ceeccccccch-hcccCccceEEEecCHHHHHHHHHHHHHhhcccCceEEEeecccCchHhhcccCCchHHHHHhHhhcc
Confidence 33333322221 12334444668888888887764322 234689999999986110 000
Q ss_pred ---------------HHHHHHHHHHHHHHhcccCCCCeEEEEeCChh-hhhhhccchhhhhhhheecHHhhhccccccCC
Q 008470 331 ---------------AVQAAVKCIRKVVNSLNLTSRPKTVIVSDTPS-FAKTITPNISEFAEVLYFDYKAFRGNISHDVN 394 (564)
Q Consensus 331 ---------------A~~AA~~Ci~k~~~~~hl~~rPrVvvVSDTPs-~vk~i~~~i~efaeVl~FDYk~f~~~~~~~~~ 394 (564)
...-...+|++++... ....|-|-||-.. -.+.+.+-.+.|..+. .+..... . .
T Consensus 230 ~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~---~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~---~~~~~~~-~---~ 299 (351)
T PF10250_consen 230 KSINPEKKRRNGCCPSTPQEAKQILRALGKN---NTTVVYIATDEIYGGERRLDPLKNMFPNVV---TKDDLLS-H---E 299 (351)
T ss_dssp GGTT-----HHHHS--HHHHHHHHHHHHHHH---T-SEEEEEESS-----------HHHHHHHH---GGGT--E-E----
T ss_pred ccccchhhhhcCCCCChHHHHHHHHHHhccC---CCCEEEEecCcccccchhHHHHHHHhhhhE---eccccCC-H---H
Confidence 1122345555555443 4457788888732 1233344444444444 1111111 1 1
Q ss_pred CCCCccccccccCCCCchhHHHHHHHhccccceeeecccccccccHHHHHHHHHHhhhc
Q 008470 395 RLPSLEFRAKDWGPAPRWVAFVDFFLASRAKHAVVSGAFRRVGTTYAQLIAALAAANSL 453 (564)
Q Consensus 395 ~~~~ldfR~rDWG~aPRWVAfVDFFLAsrAk~aVVSGAhrRVgTTYAQLiAALAAAn~l 453 (564)
.+..++ + ..+|+||+-++++|.+-|=|. +-|+...|+..=-++..
T Consensus 300 ~~~~~~----~-----~~~a~vD~~i~~~s~~Figt~-----~Stfs~~i~~~R~~~g~ 344 (351)
T PF10250_consen 300 ELEPLN----D-----DQLAMVDQEICSRSDVFIGTC-----GSTFSSNIARERHYRGK 344 (351)
T ss_dssp -S--------------S--HHHHHHHHHHSSEEEE-T-----T-HHHHHHHHHHHHSSS
T ss_pred Hhhhcc----c-----cchhHHHHHHHhcCCEEEecC-----cchhHHHhhcccCcCCC
Confidence 112221 1 679999999999999988665 56787777765555444
No 2
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=91.19 E-value=0.89 Score=44.89 Aligned_cols=99 Identities=21% Similarity=0.311 Sum_probs=59.8
Q ss_pred CCCCceehhhh---hcccch--HHHHHHHHHHHHHHHhcccC-CCCeEEEEeCChhhhhhhccchhhhhhhheecHHhhh
Q 008470 313 VDPDISLHMRM---LTNRSV--RAVQAAVKCIRKVVNSLNLT-SRPKTVIVSDTPSFAKTITPNISEFAEVLYFDYKAFR 386 (564)
Q Consensus 313 ~~PDIslHmRM---l~nRs~--rA~~AA~~Ci~k~~~~~hl~-~rPrVvvVSDTPs~vk~i~~~i~efaeVl~FDYk~f~ 386 (564)
.+..|+||-|- +.+... .-.-+-..=.++||+.+..+ ..|.++|+||-+..+|+.... ..+..+|..+
T Consensus 162 ~~~~V~VHIRRGDy~~~~~~~~~~~~~~~~Yy~~Ai~~i~~~~~~~~f~ifSDD~~w~k~~l~~---~~~~~~~~~~--- 235 (298)
T PF01531_consen 162 NSNSVCVHIRRGDYVSNGNHNWKHGICDKDYYKKAIEYIREKVKNPKFFIFSDDIEWCKENLKF---SNGDVYFSGN--- 235 (298)
T ss_pred CCCeEEEEEEchhccccccccccCCCCCHHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHhh---cCCcEEEECC---
Confidence 35678999984 222221 11111223344455444333 689999999999998853322 2222222222
Q ss_pred ccccccCCCCCCccccccccCCCCchhHHHHHHHhccccceeeecccccccccHHHHHHHHH
Q 008470 387 GNISHDVNRLPSLEFRAKDWGPAPRWVAFVDFFLASRAKHAVVSGAFRRVGTTYAQLIAALA 448 (564)
Q Consensus 387 ~~~~~~~~~~~~ldfR~rDWG~aPRWVAfVDFFLAsrAk~aVVSGAhrRVgTTYAQLiAALA 448 (564)
--+..||.|-|..||.++| -.||.=-.|-|+
T Consensus 236 -------------------------~~~~~Dl~lms~C~~~Iis------nSTFswW~a~L~ 266 (298)
T PF01531_consen 236 -------------------------NSPYEDLYLMSQCKHFIIS------NSTFSWWAAYLS 266 (298)
T ss_pred -------------------------CCHHHHHHHHHhCCcEEEC------CChHHHHHHHHC
Confidence 1256799999999999999 278887776665
No 3
>PF03254 XG_FTase: Xyloglucan fucosyltransferase; InterPro: IPR004938 Plant cell walls are crucial for development, signal transduction, and disease resistance in plants. Cell walls are made of cellulose, hemicelluloses, and pectins. Xyloglucan (XG), the principal load-bearing hemicellulose of dicotyledonous plants, has a terminal fucosyl residue. This fucosyltransferase adds this residue []. ; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0042546 cell wall biogenesis, 0016020 membrane
Probab=74.98 E-value=45 Score=36.91 Aligned_cols=280 Identities=19% Similarity=0.324 Sum_probs=153.6
Q ss_pred hhcccccccccccccCcchhHHHHHHHHHHHHhhccceeeeccc---CCC--CCCc--ceeeecceeeHHH-HHHHHHHh
Q 008470 135 QFCKHGFVLGKASEAGFGNEMYKILTGAALSVMLNRSLIIGQTR---GKY--PFGE--YISYSNVSFTLEE-VKHLWRRN 206 (564)
Q Consensus 135 eFC~~gFVlGkasEaGFGNeMYKiLTaAaLsiMLNRSLIIgqtr---g~y--PFGd--YIsysn~sFT~~E-vKHLWr~~ 206 (564)
.-|| ||.=.. -.|.||-|--+.+|-.-|+.-||-|.|-... +++ ||-+ .+- -..|.+.. +..++ .
T Consensus 109 ~~Ck--YvVw~~-~~GLGNRmLslaSaFLYAlLT~RVLLV~~~~d~~~LFCEPFpgsSWlL--P~dFP~~~~~~~~~--~ 181 (476)
T PF03254_consen 109 SECK--YVVWIP-YSGLGNRMLSLASAFLYALLTNRVLLVDPGKDMADLFCEPFPGSSWLL--PPDFPLKNQLNGFS--Q 181 (476)
T ss_pred CCCc--EEEEec-CCchHHHHHHHHHHHHHHHHhCcEEEEecCCchhhhhcCCCCCCceeC--cCCCCchhhccCCC--C
Confidence 3475 666654 4899999999999999999999999997752 222 5543 111 11233333 21111 1
Q ss_pred CchhhcCCceeeee---ccCCCCCCccccccCccccccceEEeccC-------------cc-hHHhHHHhhccCHHHHHH
Q 008470 207 GCLKKYGRHLVMRI---DDFEKPPQTNVLCSNWRKWEQPIIWFQGT-------------TD-AVAAQFFLKNVHPEMRNA 269 (564)
Q Consensus 207 ~C~~kYgR~L~mR~---DdfekP~~TNvLCsdW~~w~qpIIWF~GT-------------tD-aVa~QffLKNvhp~Mr~A 269 (564)
+-...||.-|.... ++-..|+---+-+.....-.|..++=+-. +| -.+.-+| ..|..+..
T Consensus 182 ~~~~sygnml~~~~~~~~~~~~p~~vyl~L~~~~~~~d~~FfCd~~Q~~L~~vpWLil~sd~YFvP~LF---l~P~f~~e 258 (476)
T PF03254_consen 182 ESAESYGNMLKNKSINNSDNSLPPYVYLHLEHDYDDHDKLFFCDEDQALLRKVPWLILRSDQYFVPSLF---LVPSFRPE 258 (476)
T ss_pred CchHHHHHHHhcCCccccccCCCceeEEEecccCCcCCCceecCccHHHHhcCCeEEEecCcceeehhh---hchHHHHH
Confidence 12334544332221 11123333333333333333333222211 11 1222333 35888888
Q ss_pred HHhhcCCCCCCCCCCchHHHhHHHhcCCchhHHHHHhhh----hcCCCCCCceehhhhhcccch---HHHHHHHHHHHHH
Q 008470 270 ANDLFGHPESLHAQPNVFGELMRVLISPSEDVEEAVKWV----LGNGVDPDISLHMRMLTNRSV---RAVQAAVKCIRKV 342 (564)
Q Consensus 270 A~~LfG~p~~l~sRpN~FGELmr~~ISPs~dV~~AV~W~----l~gg~~PDIslHmRMl~nRs~---rA~~AA~~Ci~k~ 342 (564)
-.+||=+ +-.||--|-|-|.-|+.+|-.-|.=- |.+ +|--|-+..|+...++. .-....+.|+++=
T Consensus 259 L~~lFP~------k~tvFhhL~RYLfhPsN~VW~~Itryy~ayLa~-Ad~riGIQIRvf~~~~~~~~~~~dqIl~C~~~e 331 (476)
T PF03254_consen 259 LDRLFPE------KDTVFHHLGRYLFHPSNQVWGLITRYYDAYLAK-ADERIGIQIRVFDPKPGPFQHVLDQILSCTQQE 331 (476)
T ss_pred HHHhcCC------hhHHHHHHHHHHcCCCchhHHHHHHHHHHHccC-cCceeEEEEEecCCCCCcchhHHHHHHHHHhhc
Confidence 8899955 45799999999999999998877532 333 56668888888875532 2456677888742
Q ss_pred --HHhc------------ccCCCCeEEEEeCChhhhhhhccchhhhhhhheecHHhhhccccccCCCCCCccc-cccccC
Q 008470 343 --VNSL------------NLTSRPKTVIVSDTPSFAKTITPNISEFAEVLYFDYKAFRGNISHDVNRLPSLEF-RAKDWG 407 (564)
Q Consensus 343 --~~~~------------hl~~rPrVvvVSDTPs~vk~i~~~i~efaeVl~FDYk~f~~~~~~~~~~~~~ldf-R~rDWG 407 (564)
+-.. ...+.-.|.|.|..|..-+.|+..-.+.+-| .-++.++.+.-. ..--+|
T Consensus 332 ~LLP~v~~~~~~~~~~~~~~~~~kaVlVtSL~~~yye~lr~~Y~~~~t~------------tGe~V~V~QpShe~~Q~~~ 399 (476)
T PF03254_consen 332 KLLPEVVDTQEPAASSSSKSQKSKAVLVTSLYSEYYEKLRNMYWEHPTV------------TGEVVGVHQPSHEEYQQFG 399 (476)
T ss_pred ccCCCccccccccccccCCCCceEEEEEEeCCHHHHHHHHHHHhcCCCc------------CCcEEEEECCCCccccccc
Confidence 1001 0012234666777787777777654332211 112222222111 111122
Q ss_pred CCC-chhHHHHHHHhccccceeeecccccccccHHHHHHHHH
Q 008470 408 PAP-RWVAFVDFFLASRAKHAVVSGAFRRVGTTYAQLIAALA 448 (564)
Q Consensus 408 ~aP-RWVAfVDFFLAsrAk~aVVSGAhrRVgTTYAQLiAALA 448 (564)
.-. -==|.+|-.|=|-+..-|.||-+ |+-=...+||
T Consensus 400 ~~~h~~kAlaEmyLLS~sD~LVTS~~S-----TFGYVAqgLg 436 (476)
T PF03254_consen 400 DNMHNQKALAEMYLLSLSDVLVTSGWS-----TFGYVAQGLG 436 (476)
T ss_pred ccchHHHHHHHHHHHHhccceEecCCC-----CchhHHHhhc
Confidence 211 12388999999999999999965 5544444444
No 4
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=56.35 E-value=6.7 Score=33.27 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=19.8
Q ss_pred cceeeecccccccccHHHHHHHH
Q 008470 425 KHAVVSGAFRRVGTTYAQLIAAL 447 (564)
Q Consensus 425 k~aVVSGAhrRVgTTYAQLiAAL 447 (564)
|+++||||++.+|-.+|+..+.-
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~ 23 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARR 23 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCHHHHHHHHHHHhc
Confidence 78999999999999988876654
No 5
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=54.97 E-value=7.2 Score=39.53 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.2
Q ss_pred ccccceeeecccccccccHHHHHHH
Q 008470 422 SRAKHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 422 srAk~aVVSGAhrRVgTTYAQLiAA 446 (564)
..-+++|||||+..+|-.||...|.
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~ 28 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLAR 28 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHH
Confidence 3568999999999999999998876
No 6
>PRK06484 short chain dehydrogenase; Validated
Probab=51.14 E-value=21 Score=36.71 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.8
Q ss_pred cccceeeecccccccccHHHHHHH
Q 008470 423 RAKHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 423 rAk~aVVSGAhrRVgTTYAQLiAA 446 (564)
.-|.++||||++.+|...|+-.+.
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~ 291 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAA 291 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHH
Confidence 558999999999999998887664
No 7
>cd00355 Ribosomal_L30_like Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.
Probab=49.74 E-value=21 Score=27.75 Aligned_cols=30 Identities=37% Similarity=0.500 Sum_probs=26.1
Q ss_pred HHHHHHhcccCCCCeEEEEeCChhhhhhhc
Q 008470 339 IRKVVNSLNLTSRPKTVIVSDTPSFAKTIT 368 (564)
Q Consensus 339 i~k~~~~~hl~~rPrVvvVSDTPs~vk~i~ 368 (564)
.+++++.++|.+.-..|++-|||++..-|+
T Consensus 15 ~~~tl~~LgL~k~~~~v~~~~tp~~~gml~ 44 (53)
T cd00355 15 QRKTLKALGLRKINQTVFVKDTPSIRGMLR 44 (53)
T ss_pred HHHHHHHcCCCcCCCEEEEeCCHHHHHHHH
Confidence 567888999999999999999999877664
No 8
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=49.73 E-value=1.7e+02 Score=29.86 Aligned_cols=92 Identities=16% Similarity=0.227 Sum_probs=59.1
Q ss_pred HHHHHHHHhhcCCCCCCCCCCchHHH-hHHHhcCCchhHHHHHhhhhcCCCCCCceehhhhhcccchHHHHHHHH-----
Q 008470 264 PEMRNAANDLFGHPESLHAQPNVFGE-LMRVLISPSEDVEEAVKWVLGNGVDPDISLHMRMLTNRSVRAVQAAVK----- 337 (564)
Q Consensus 264 p~Mr~AA~~LfG~p~~l~sRpN~FGE-Lmr~~ISPs~dV~~AV~W~l~gg~~PDIslHmRMl~nRs~rA~~AA~~----- 337 (564)
.+++.--.++|.||.+.. -|+.+|- +++-+|.|...-..|.+|..-||.+| +.-.+.+-..+.+.++.
T Consensus 20 ~~v~~yL~~~~~D~~vi~-~p~~~~~~~l~~~I~~~R~~k~~~~Y~~igg~SP-----l~~~t~~q~~~l~~~l~~~~~~ 93 (322)
T TIGR00109 20 EEVERFLKQLFADPRIID-ISRAKWRKPLAKMILPLRSPKIAKNYEAIGGGSP-----LLQITEQQAHALEKRLPNEIDF 93 (322)
T ss_pred HHHHHHHHHHcCCcchhc-CCccccccchHHHHHhhccHHHHHHHHHhCCCCc-----HHHHHHHHHHHHHHHhccCCCc
Confidence 455555667899998885 5555554 78889999999999999999998888 22223333334444332
Q ss_pred -----------HHHHHHHhcccCCCCeEEEEeCCh
Q 008470 338 -----------CIRKVVNSLNLTSRPKTVIVSDTP 361 (564)
Q Consensus 338 -----------Ci~k~~~~~hl~~rPrVvvVSDTP 361 (564)
=|..+++.+...+--+||++.=-|
T Consensus 94 ~V~~amry~~P~i~~~l~~l~~~G~~~iv~lPL~P 128 (322)
T TIGR00109 94 KVYIAMRYGEPFTEEAVKELLKDGVERAVVLPLYP 128 (322)
T ss_pred eEEEeeccCCCCHHHHHHHHHhcCCCeEEEEeCCc
Confidence 144555555555555666665444
No 9
>smart00718 DM4_12 DM4/DM12 family of domains in Drosophila melanogaster proteins of unknown function.
Probab=48.72 E-value=13 Score=32.11 Aligned_cols=17 Identities=29% Similarity=0.845 Sum_probs=14.8
Q ss_pred CCCchHHHhHHHhcCCc
Q 008470 282 AQPNVFGELMRVLISPS 298 (564)
Q Consensus 282 sRpN~FGELmr~~ISPs 298 (564)
..+++|||||+++.+|+
T Consensus 41 ~~~Gll~ell~ilftps 57 (95)
T smart00718 41 DHRGLLGELLRIVLTPP 57 (95)
T ss_pred cccchHHHHHHHhhcCC
Confidence 34559999999999999
No 10
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=45.12 E-value=28 Score=36.82 Aligned_cols=259 Identities=19% Similarity=0.273 Sum_probs=122.2
Q ss_pred cccccccccCcchhHHHHHHHHHHHHhhccceeeecccCCC---CCCcceeeecceee-HHHHHHHHHHhCchhhcCCce
Q 008470 141 FVLGKASEAGFGNEMYKILTGAALSVMLNRSLIIGQTRGKY---PFGEYISYSNVSFT-LEEVKHLWRRNGCLKKYGRHL 216 (564)
Q Consensus 141 FVlGkasEaGFGNeMYKiLTaAaLsiMLNRSLIIgqtrg~y---PFGdYIsysn~sFT-~~EvKHLWr~~~C~~kYgR~L 216 (564)
||+-+ --.||||-+.-+-.|=.-+==+||.|+|--...-| ||-+-. ...|- +++| +-..
T Consensus 4 ~~~~r-~r~g~gd~l~~la~aw~~a~~~~r~l~idw~~s~~~~~~f~n~f---~~ffepv~~i-------------~~~~ 66 (321)
T PF05830_consen 4 FVVSR-RRTGLGDCLWSLAAAWRYAKRTGRTLVIDWRGSCYLDQPFTNAF---PVFFEPVEDI-------------AGVR 66 (321)
T ss_dssp EEEEE---S-HHHHHHHHHHHHHHHHHHT-EEEEE-BT-TT-SSTTSBSH---HHHB---SEE-------------TTEE
T ss_pred eEEEe-ccCCchhHHHHHHHHHHHHHHhCCeEEEEcCCceecCCcccccC---Ccccchhhhh-------------cCce
Confidence 44433 24799999999988888888999999997665433 442210 01111 1112 0011
Q ss_pred eeeeccCCC-CCCccccccCccccccceEEeccCcchHHhHHHhhccCHHHHHHHHhhcCCCCCCCCCCchH--------
Q 008470 217 VMRIDDFEK-PPQTNVLCSNWRKWEQPIIWFQGTTDAVAAQFFLKNVHPEMRNAANDLFGHPESLHAQPNVF-------- 287 (564)
Q Consensus 217 ~mR~Ddfek-P~~TNvLCsdW~~w~qpIIWF~GTtDaVa~QffLKNvhp~Mr~AA~~LfG~p~~l~sRpN~F-------- 287 (564)
++--|++-. --..++.= +.|.-|-|-+-=+.| .|.|= =|.--..||-..+--.+-+=|.
T Consensus 67 ~~~~d~i~~~~~~g~~fp---~~w~~p~~~~~~~pd---~qi~r------e~d~l~~lf~~~~d~~a~~vv~d~c~~~~c 134 (321)
T PF05830_consen 67 VICDDRINQFSFPGPFFP---AWWNKPSIDCVYRPD---EQIFR------ERDELRQLFQSQEDHEANTVVCDACLMWRC 134 (321)
T ss_dssp EE-SGGGGT----SSEES---GGGGS-GGGGS---H---HHHHH------HHHHHHHHHHSSS--S-SEEEE-S--TTSS
T ss_pred eEecchhhhhcCCCCcCh---hHHhCCCcceecCCh---HHHhh------hhHHHHHHhhcccccccchhhhHhhcCCcc
Confidence 111111111 00011111 235566665544555 35542 2445556665554333322221
Q ss_pred ----HHhHHHhcCCchhHHHHHhh--hhcCCCCCCceehhhhh-------cccchHHHHHHHHHHHHHHHhc----ccCC
Q 008470 288 ----GELMRVLISPSEDVEEAVKW--VLGNGVDPDISLHMRML-------TNRSVRAVQAAVKCIRKVVNSL----NLTS 350 (564)
Q Consensus 288 ----GELmr~~ISPs~dV~~AV~W--~l~gg~~PDIslHmRMl-------~nRs~rA~~AA~~Ci~k~~~~~----hl~~ 350 (564)
-+.+..-|.|.++|++=|+- .-.-...+=|-+|-|+= |.++.-=.+.+++=+..++.+. |-+
T Consensus 135 ~~~aeR~if~slkpR~eIqarID~iy~ehf~g~~~IGVHVRhGngeD~~~h~~~~~D~e~~L~~V~~ai~~ak~~~~~k- 213 (321)
T PF05830_consen 135 DEEAEREIFSSLKPRPEIQARIDAIYREHFAGYSVIGVHVRHGNGEDIMDHAPYWADEERALRQVCTAIDKAKALAPPK- 213 (321)
T ss_dssp -HHHHHHHHHHS-B-HHHHHHHHHHHHHHTTTSEEEEEEE---------------HHHHHHHHHHHHHHHHHHTS--SS-
T ss_pred hhHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCCceEEEEEeccCCcchhccCccccCchHHHHHHHHHHHHHHhccCCC-
Confidence 12345668899999999985 33444567789999943 3333333334554444444333 333
Q ss_pred CCeEEEEeCChhhhhhhccchhhhhhhheecHHhhhccccccCCCCCCccccccccCCCCchhHHHHHHHhcccccee-e
Q 008470 351 RPKTVIVSDTPSFAKTITPNISEFAEVLYFDYKAFRGNISHDVNRLPSLEFRAKDWGPAPRWVAFVDFFLASRAKHAV-V 429 (564)
Q Consensus 351 rPrVvvVSDTPs~vk~i~~~i~efaeVl~FDYk~f~~~~~~~~~~~~~ldfR~rDWG~aPRWVAfVDFFLAsrAk~aV-V 429 (564)
.-+|-|-||+|.+++.++.. |..++.- -|-|... +...|+. .+||.-..=-|++|-+|=||-+|.+ .
T Consensus 214 ~~~IFLATDSaeVid~fr~~---FPdiiti-~k~F~~~------~~g~Lhs--~~~g~~gg~~ALIDM~LLSrCD~LIr~ 281 (321)
T PF05830_consen 214 PVRIFLATDSAEVIDQFRKK---FPDIITI-PKQFPAS------QAGPLHS--AAVGIEGGESALIDMYLLSRCDYLIRF 281 (321)
T ss_dssp -EEEEEEES-HHHHHHHHHH---STTEE-------------------------HHHHHHHHHHHHHHHHHHTTSSEEEEE
T ss_pred CeeEEEecCcHHHHHHHHHH---CCCeEEc-ccccCCC------CCCcCcc--cccccchHHHHHHHHHHHHhCCeEEEc
Confidence 33788999999999999865 4444443 2333322 2233444 4666666667999999999999988 4
Q ss_pred --ecccccccccHHHHHH
Q 008470 430 --SGAFRRVGTTYAQLIA 445 (564)
Q Consensus 430 --SGAhrRVgTTYAQLiA 445 (564)
|-|.. -||+|.+
T Consensus 282 ~ptS~Fs----r~asl~~ 295 (321)
T PF05830_consen 282 PPTSAFS----RYASLFV 295 (321)
T ss_dssp STT-GGG----HHHHHH-
T ss_pred CCCchhh----hHHHHhc
Confidence 33332 3666654
No 11
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=44.69 E-value=15 Score=33.85 Aligned_cols=32 Identities=28% Similarity=0.407 Sum_probs=24.7
Q ss_pred HHHHH---HhccccceeeecccccccccHHHHHHH
Q 008470 415 FVDFF---LASRAKHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 415 fVDFF---LAsrAk~aVVSGAhrRVgTTYAQLiAA 446 (564)
+|||- +.-.-|.++||||++.+|...|+..+.
T Consensus 3 ~~~~~~~~~~l~~k~vlItGas~gIG~~ia~~l~~ 37 (258)
T PRK06935 3 LDKFSMDFFSLDGKVAIVTGGNTGLGQGYAVALAK 37 (258)
T ss_pred hhhhccccccCCCCEEEEeCCCchHHHHHHHHHHH
Confidence 46665 233458999999999999998887765
No 12
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=38.37 E-value=33 Score=26.53 Aligned_cols=64 Identities=22% Similarity=0.321 Sum_probs=49.4
Q ss_pred hHHHhhccCHHHHHHHHhhcCCCCCCCCCCchHHHhHHHhcCCchhHHHHHhhhhcCCCCCCceehhh
Q 008470 255 AQFFLKNVHPEMRNAANDLFGHPESLHAQPNVFGELMRVLISPSEDVEEAVKWVLGNGVDPDISLHMR 322 (564)
Q Consensus 255 ~QffLKNvhp~Mr~AA~~LfG~p~~l~sRpN~FGELmr~~ISPs~dV~~AV~W~l~gg~~PDIslHmR 322 (564)
++.+.++-.|..|..|..++|.-+ .|.+.=.|.+.+=+|+..|..++-|+|+-=.+|+..-.+.
T Consensus 5 ~~~l~~~~~~~vr~~a~~~L~~~~----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~~~~~~L~ 68 (88)
T PF13646_consen 5 LQLLQNDPDPQVRAEAARALGELG----DPEAIPALIELLKDEDPMVRRAAARALGRIGDPEAIPALI 68 (88)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHCCT----HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHHHHTHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHcC----CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 455668888999999999999543 3466778888888999999999999998755555444443
No 13
>PF07841 DM4_12: DM4/DM12 family; InterPro: IPR006631 This domain of unknown function is found in primarily in Drosophila melanogaster (Fruit fly) proteins of unknown function.
Probab=37.31 E-value=20 Score=29.57 Aligned_cols=22 Identities=27% Similarity=0.673 Sum_probs=18.6
Q ss_pred CCCchHHHhHHHhcCCchhHHH
Q 008470 282 AQPNVFGELMRVLISPSEDVEE 303 (564)
Q Consensus 282 sRpN~FGELmr~~ISPs~dV~~ 303 (564)
..-++||||+|++.+|+....+
T Consensus 37 ~~~gl~~ell~~ift~~~~~~~ 58 (82)
T PF07841_consen 37 EHNGLLGELLHIIFTPSSSDDE 58 (82)
T ss_pred ccCcHHHHHHHHhcCCCccccc
Confidence 4567999999999999987655
No 14
>cd01658 Ribosomal_L30 Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.
Probab=37.15 E-value=41 Score=26.64 Aligned_cols=30 Identities=33% Similarity=0.448 Sum_probs=25.9
Q ss_pred HHHHHHhcccCCCCeEEEEeCChhhhhhhc
Q 008470 339 IRKVVNSLNLTSRPKTVIVSDTPSFAKTIT 368 (564)
Q Consensus 339 i~k~~~~~hl~~rPrVvvVSDTPs~vk~i~ 368 (564)
++++++.++|.+.-.+|++-|||++.--|.
T Consensus 16 ~r~tl~~LgL~k~~~~v~~~~tp~~~Gml~ 45 (54)
T cd01658 16 QRATLKALGLKKINQTVVHKDTPSIRGMIN 45 (54)
T ss_pred HHHHHHHcCCCcCCCEEEecCCHHHHHHHH
Confidence 577889999999999999999999876554
No 15
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=37.01 E-value=1.1e+02 Score=35.27 Aligned_cols=84 Identities=15% Similarity=0.145 Sum_probs=57.6
Q ss_pred hHHHhhccCHHHHHHHHhhcCCCCCCCCCCchHHHhHHHhcCCchhHHHHHhhhhcCCCCCCcee-hhhhhcccchHHHH
Q 008470 255 AQFFLKNVHPEMRNAANDLFGHPESLHAQPNVFGELMRVLISPSEDVEEAVKWVLGNGVDPDISL-HMRMLTNRSVRAVQ 333 (564)
Q Consensus 255 ~QffLKNvhp~Mr~AA~~LfG~p~~l~sRpN~FGELmr~~ISPs~dV~~AV~W~l~gg~~PDIsl-HmRMl~nRs~rA~~ 333 (564)
+.-+|+.-+|.+|.+|...+|.-+.+ +.+...|++++=+|+..|..+.-++|+.-.+++..- =+.+|...+..-++
T Consensus 780 L~~ll~D~d~~VR~aA~~aLg~~g~~---~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~ 856 (897)
T PRK13800 780 VRALTGDPDPLVRAAALAALAELGCP---PDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRK 856 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCc---chhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHH
Confidence 45567777888888888888776443 344556888888888888888888887655554433 35666666666667
Q ss_pred HHHHHHHH
Q 008470 334 AAVKCIRK 341 (564)
Q Consensus 334 AA~~Ci~k 341 (564)
+|...|.+
T Consensus 857 ~A~~aL~~ 864 (897)
T PRK13800 857 AAVLALTR 864 (897)
T ss_pred HHHHHHhc
Confidence 77766654
No 16
>PRK08339 short chain dehydrogenase; Provisional
Probab=36.40 E-value=22 Score=33.43 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=20.9
Q ss_pred ccceeeecccccccccHHHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIAAL 447 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiAAL 447 (564)
-|+++||||++.+|-..|+.+++-
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~ 31 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARA 31 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHC
Confidence 589999999999999999887653
No 17
>PRK09687 putative lyase; Provisional
Probab=35.82 E-value=1e+02 Score=30.80 Aligned_cols=65 Identities=15% Similarity=0.125 Sum_probs=52.2
Q ss_pred HHhhccCHHHHHHHHhhcCCCCCCCCCCchHHHhHHHhcCCchhHHHHHhhhhcCCCCCCceehhhh
Q 008470 257 FFLKNVHPEMRNAANDLFGHPESLHAQPNVFGELMRVLISPSEDVEEAVKWVLGNGVDPDISLHMRM 323 (564)
Q Consensus 257 ffLKNvhp~Mr~AA~~LfG~p~~l~sRpN~FGELmr~~ISPs~dV~~AV~W~l~gg~~PDIslHmRM 323 (564)
=+|++-++.+|.+|..-+|+- ...-|.+...|+..+-.+..+|..+.-|+|+.=.+|+..=++--
T Consensus 166 ~~L~d~~~~VR~~A~~aLg~~--~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av~~Li~ 230 (280)
T PRK09687 166 NLLKDPNGDVRNWAAFALNSN--KYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLIK 230 (280)
T ss_pred HHhcCCCHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCChhHHHHHHH
Confidence 356788899999999999976 22356788999999999999999999999987677765555433
No 18
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=35.22 E-value=2.2e+02 Score=26.01 Aligned_cols=51 Identities=14% Similarity=0.257 Sum_probs=41.8
Q ss_pred HHHHHHHHhhcCCCCCCCCCCchHHHhHHHhcCCchhHHHHHhhhhcCCCCC
Q 008470 264 PEMRNAANDLFGHPESLHAQPNVFGELMRVLISPSEDVEEAVKWVLGNGVDP 315 (564)
Q Consensus 264 p~Mr~AA~~LfG~p~~l~sRpN~FGELmr~~ISPs~dV~~AV~W~l~gg~~P 315 (564)
.+++.=-..+|.++.+..- |+.+=.+++-+|+|..--+-+-+|..-||.+|
T Consensus 15 ~~v~~yL~~~~~d~~vi~~-p~~~~~~l~~~I~~~r~~k~~~~Y~~ig~~SP 65 (159)
T cd03411 15 EDVRPFLKNFLSDRRVIEL-PRPLRPILAGIILPRRPPKVAKNYKKIGGGSP 65 (159)
T ss_pred HHHHHHHHHHcCCCCcccC-CHHHHHHHHHHhcccccHHHHHHHHHcCCCCc
Confidence 3455556678999987654 67777889999999999999999999998888
No 19
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=35.04 E-value=1e+02 Score=35.44 Aligned_cols=78 Identities=18% Similarity=0.109 Sum_probs=45.8
Q ss_pred hHHHhhccCHHHHHHHHhhcCCCCCCCCCCchHHHhHHHhcCCchhHHHHHhhhhcCCCCCCceehhhhhcccchHHHHH
Q 008470 255 AQFFLKNVHPEMRNAANDLFGHPESLHAQPNVFGELMRVLISPSEDVEEAVKWVLGNGVDPDISLHMRMLTNRSVRAVQA 334 (564)
Q Consensus 255 ~QffLKNvhp~Mr~AA~~LfG~p~~l~sRpN~FGELmr~~ISPs~dV~~AV~W~l~gg~~PDIslHmRMl~nRs~rA~~A 334 (564)
+.-.|+.-+|.+|.+|...+|.-.. ++ ..-|.+.|=.|...|..+.=.+|+.-.+++. | ...+...+..-+.+
T Consensus 689 L~~~L~~~d~~VR~~A~~aL~~~~~----~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~-l-~~~l~D~~~~VR~~ 761 (897)
T PRK13800 689 LRDHLGSPDPVVRAAALDVLRALRA----GD-AALFAAALGDPDHRVRIEAVRALVSVDDVES-V-AGAATDENREVRIA 761 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhhcc----CC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH-H-HHHhcCCCHHHHHH
Confidence 3345777888888888888775321 11 2345667777887777777777766433332 2 34455555444444
Q ss_pred HHHHH
Q 008470 335 AVKCI 339 (564)
Q Consensus 335 A~~Ci 339 (564)
|..=|
T Consensus 762 aa~aL 766 (897)
T PRK13800 762 VAKGL 766 (897)
T ss_pred HHHHH
Confidence 44433
No 20
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=34.76 E-value=25 Score=31.43 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=19.9
Q ss_pred cceeeecccccccccHHHHHHHH
Q 008470 425 KHAVVSGAFRRVGTTYAQLIAAL 447 (564)
Q Consensus 425 k~aVVSGAhrRVgTTYAQLiAAL 447 (564)
|.++||||++.||...|+.+++.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~ 23 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKD 23 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHC
Confidence 67899999999999999887653
No 21
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=34.76 E-value=24 Score=35.26 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=23.2
Q ss_pred cccceeeeccc--ccccccHHHHHHHHHH
Q 008470 423 RAKHAVVSGAF--RRVGTTYAQLIAALAA 449 (564)
Q Consensus 423 rAk~aVVSGAh--rRVgTTYAQLiAALAA 449 (564)
.-|.++||||. +.+|-.||+.+|+--|
T Consensus 7 ~gk~alITGa~~~~GIG~a~A~~la~~Ga 35 (299)
T PRK06300 7 TGKIAFIAGIGDDQGYGWGIAKALAEAGA 35 (299)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCC
Confidence 35899999995 9999999999987655
No 22
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=34.42 E-value=19 Score=38.25 Aligned_cols=52 Identities=23% Similarity=0.448 Sum_probs=36.2
Q ss_pred cchHHhHHHhhccCHHH----------HHHHHhhcCCCCCCCCCCchHHHhHHHhcCCchhHHHHHhhhhcCC
Q 008470 250 TDAVAAQFFLKNVHPEM----------RNAANDLFGHPESLHAQPNVFGELMRVLISPSEDVEEAVKWVLGNG 312 (564)
Q Consensus 250 tDaVa~QffLKNvhp~M----------r~AA~~LfG~p~~l~sRpN~FGELmr~~ISPs~dV~~AV~W~l~gg 312 (564)
-.|+|+++-.-+.=|.. -+|-..|=+-...|++|||+| +.|++||.|-+++|
T Consensus 156 GGaIav~~a~~k~lpsl~Gl~viDVVEgtAmeAL~~m~~fL~~rP~~F-----------~Si~~Ai~W~v~sg 217 (343)
T KOG2564|consen 156 GGAIAVHTAASKTLPSLAGLVVIDVVEGTAMEALNSMQHFLRNRPKSF-----------KSIEDAIEWHVRSG 217 (343)
T ss_pred cchhhhhhhhhhhchhhhceEEEEEechHHHHHHHHHHHHHhcCCccc-----------cchhhHHHHHhccc
Confidence 36777777665555542 123333334466899999999 67999999999987
No 23
>PRK07677 short chain dehydrogenase; Provisional
Probab=32.97 E-value=28 Score=31.97 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.7
Q ss_pred cceeeecccccccccHHHHHHH
Q 008470 425 KHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 425 k~aVVSGAhrRVgTTYAQLiAA 446 (564)
|.++||||++.+|...|+..++
T Consensus 2 k~~lItG~s~giG~~ia~~l~~ 23 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAE 23 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHH
Confidence 6789999999999999988765
No 24
>TIGR01308 rpmD_bact ribosomal protein L30, bacterial/organelle. This model describes bacterial (and organellar) 50S ribosomal protein L30. Homologous ribosomal proteins of the eukaryotic cytosol and of the archaea differ substantially in architecture, from bacterial L30 and also from each other, and are described by separate models.
Probab=32.39 E-value=54 Score=26.26 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=25.4
Q ss_pred HHHHHHhcccCCCCeEEEEeCChhhhhhhc
Q 008470 339 IRKVVNSLNLTSRPKTVIVSDTPSFAKTIT 368 (564)
Q Consensus 339 i~k~~~~~hl~~rPrVvvVSDTPs~vk~i~ 368 (564)
.++.++.++|.+.-..|++-|||++---|+
T Consensus 16 ~r~tl~~LgL~k~~~~v~~~dtp~irGMi~ 45 (55)
T TIGR01308 16 QRKTLKALGLRKIGRQVVLEDNPAIRGMVN 45 (55)
T ss_pred HHHHHHHcCCCcCCCEEEecCCHHHHHHHH
Confidence 467788999999999999999999865544
No 25
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=32.08 E-value=55 Score=31.01 Aligned_cols=45 Identities=13% Similarity=0.253 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcccCCCCeEEEEeCChhhhhhhccchhhhhhhheecH
Q 008470 336 VKCIRKVVNSLNLTSRPKTVIVSDTPSFAKTITPNISEFAEVLYFDY 382 (564)
Q Consensus 336 ~~Ci~k~~~~~hl~~rPrVvvVSDTPs~vk~i~~~i~efaeVl~FDY 382 (564)
.+.|.+.+....... -||+.|| ||++...|+...+.--+++=|||
T Consensus 12 ~~~l~~~l~~~~~~~-~~iacls-tPsl~~~l~~~~~~~~~~~Lle~ 56 (162)
T PF10237_consen 12 AEFLARELLDGALDD-TRIACLS-TPSLYEALKKESKPRIQSFLLEY 56 (162)
T ss_pred HHHHHHHHHHhcCCC-CEEEEEe-CcHHHHHHHhhcCCCccEEEEee
Confidence 344555555543333 3888888 99999999883333334444444
No 26
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=31.95 E-value=27 Score=35.80 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.9
Q ss_pred cccceeeecccccccccHHHHHH
Q 008470 423 RAKHAVVSGAFRRVGTTYAQLIA 445 (564)
Q Consensus 423 rAk~aVVSGAhrRVgTTYAQLiA 445 (564)
+.|.++||||+|.+|.+-+|+.|
T Consensus 13 ~sk~~~vtGg~sGIGrAia~~la 35 (256)
T KOG1200|consen 13 MSKVAAVTGGSSGIGRAIAQLLA 35 (256)
T ss_pred hcceeEEecCCchHHHHHHHHHH
Confidence 57899999999999999999876
No 27
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=31.70 E-value=30 Score=31.25 Aligned_cols=23 Identities=9% Similarity=0.216 Sum_probs=19.2
Q ss_pred cceeeecccccccccHHHHHHHH
Q 008470 425 KHAVVSGAFRRVGTTYAQLIAAL 447 (564)
Q Consensus 425 k~aVVSGAhrRVgTTYAQLiAAL 447 (564)
+.+|||||++.||-..|+..++.
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~ 23 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLER 23 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHh
Confidence 46899999999999888876654
No 28
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=31.28 E-value=24 Score=33.21 Aligned_cols=66 Identities=20% Similarity=0.224 Sum_probs=47.5
Q ss_pred HHHHHHHHhhccceeeecccCCCCCCcceeeecceeeHHHHHHHHHHhCchhhcCCceeeeeccCCCCCCc
Q 008470 159 LTGAALSVMLNRSLIIGQTRGKYPFGEYISYSNVSFTLEEVKHLWRRNGCLKKYGRHLVMRIDDFEKPPQT 229 (564)
Q Consensus 159 LTaAaLsiMLNRSLIIgqtrg~yPFGdYIsysn~sFT~~EvKHLWr~~~C~~kYgR~L~mR~DdfekP~~T 229 (564)
.-|+++|..||-.+|+---.++.|.++|....+.+.. .+-|+-.++..+ .-+=|+=||||-.-.+|
T Consensus 66 ~~a~~vA~~Lgvp~v~vRK~~kl~~~~~~~~~~~~~~---~~~l~~~~~~l~--~G~rVlIVDDllaTGgT 131 (179)
T COG0503 66 PLAAAVALELGVPFVPVRKKGKLPEESVVETYYLEYG---SETLELHKDALK--PGDRVLIVDDLLATGGT 131 (179)
T ss_pred hhHHHHHHHhCCCEEEEEecCCCCCcceeEEEEEecc---ceEEEEEhhhCC--CCCEEEEEecchhcChH
Confidence 5689999999999999999999999999766666655 333444455555 23345668888765544
No 29
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=30.83 E-value=32 Score=32.37 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=19.0
Q ss_pred ccceeeecccc--cccccHHHHHHH
Q 008470 424 AKHAVVSGAFR--RVGTTYAQLIAA 446 (564)
Q Consensus 424 Ak~aVVSGAhr--RVgTTYAQLiAA 446 (564)
-|.++||||++ .+|-..|+..|.
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~ 32 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKK 32 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHH
Confidence 48899999998 799888877654
No 30
>PLN02780 ketoreductase/ oxidoreductase
Probab=30.76 E-value=29 Score=34.45 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=19.8
Q ss_pred ccceeeecccccccccHHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiAA 446 (564)
-++++||||++.+|-.+|+-.|.
T Consensus 53 g~~~lITGAs~GIG~alA~~La~ 75 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLAR 75 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHH
Confidence 36799999999999999987764
No 31
>PRK05693 short chain dehydrogenase; Provisional
Probab=30.48 E-value=31 Score=32.24 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.0
Q ss_pred cceeeecccccccccHHHHHHH
Q 008470 425 KHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 425 k~aVVSGAhrRVgTTYAQLiAA 446 (564)
|.++||||++.+|...++..+.
T Consensus 2 k~vlItGasggiG~~la~~l~~ 23 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKA 23 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHH
Confidence 6799999999999988887654
No 32
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=29.97 E-value=27 Score=33.43 Aligned_cols=40 Identities=13% Similarity=0.237 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhccceeeecccCCCCC-CcceeeecceeeHH
Q 008470 158 ILTGAALSVMLNRSLIIGQTRGKYPF-GEYISYSNVSFTLE 197 (564)
Q Consensus 158 iLTaAaLsiMLNRSLIIgqtrg~yPF-GdYIsysn~sFT~~ 197 (564)
|.-|+++|..||..+|+-.-.++.|. |+|++-+.+++|.+
T Consensus 62 iplA~~lA~~Lg~p~v~vRK~~k~~~~~~~~~~~~~~~~~~ 102 (189)
T PRK09219 62 IAPAVMAALALGVPVVFAKKKKSLTLTDDVYTATVYSFTKQ 102 (189)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCceEEEEEeeeccC
Confidence 68899999999999999999888887 89888777777664
No 33
>PRK07904 short chain dehydrogenase; Provisional
Probab=29.63 E-value=32 Score=32.29 Aligned_cols=25 Identities=8% Similarity=0.143 Sum_probs=20.5
Q ss_pred cccceeeecccccccccHHHHHHHH
Q 008470 423 RAKHAVVSGAFRRVGTTYAQLIAAL 447 (564)
Q Consensus 423 rAk~aVVSGAhrRVgTTYAQLiAAL 447 (564)
..|.++||||++++|..+|+-.++-
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~ 31 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKN 31 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhc
Confidence 3578999999999999998765543
No 34
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=29.62 E-value=58 Score=33.28 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=32.8
Q ss_pred hHHHHHHHhccccceeeecccccccc----cHHHHHHHHHHhhhc
Q 008470 413 VAFVDFFLASRAKHAVVSGAFRRVGT----TYAQLIAALAAANSL 453 (564)
Q Consensus 413 VAfVDFFLAsrAk~aVVSGAhrRVgT----TYAQLiAALAAAn~l 453 (564)
.+|.||.|.. .|-.|+|||.|--+- .-..|..|+.+|...
T Consensus 95 A~~L~~~l~~-~kPVVlTGA~rp~~~~~sDg~~NL~~Al~~A~~~ 138 (323)
T cd00411 95 AYFLSLTLEN-DKPVVLTGSMRPSTELSADGPLNLYNAVYVAANY 138 (323)
T ss_pred HHHHHHHhcC-CCCEEEECCCCCCCCcCcchHHHHHHHHHHHcCc
Confidence 4578999998 999999999998765 347899999888643
No 35
>PRK12747 short chain dehydrogenase; Provisional
Probab=28.69 E-value=37 Score=31.13 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=20.4
Q ss_pred ccceeeecccccccccHHHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIAAL 447 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiAAL 447 (564)
-|.++||||++.+|..-|+.+++.
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~ 27 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLAND 27 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC
Confidence 478999999999999888877654
No 36
>KOG3517 consensus Transcription factor PAX1/9 [Transcription]
Probab=28.08 E-value=70 Score=33.69 Aligned_cols=58 Identities=28% Similarity=0.341 Sum_probs=45.6
Q ss_pred CchhHHHHHhhhhcCCCCCCceehhhhhcccchHHHHHHHHHHHHHHHhcccC----------CCCeEEEEeCChhhhhh
Q 008470 297 PSEDVEEAVKWVLGNGVDPDISLHMRMLTNRSVRAVQAAVKCIRKVVNSLNLT----------SRPKTVIVSDTPSFAKT 366 (564)
Q Consensus 297 Ps~dV~~AV~W~l~gg~~PDIslHmRMl~nRs~rA~~AA~~Ci~k~~~~~hl~----------~rPrVvvVSDTPs~vk~ 366 (564)
|...--.-|+.+--|-.--||+-.+|.-| -|+.|++-..|.+ ++||| -||-+||.
T Consensus 22 Pna~RlrIVELarlGiRPCDISRQLrvSH-----------GCVSKILaRy~EtGsIlPGaIGGSkPRV----TTP~VV~~ 86 (334)
T KOG3517|consen 22 PNAIRLRIVELARLGIRPCDISRQLRVSH-----------GCVSKILARYNETGSILPGAIGGSKPRV----TTPKVVKY 86 (334)
T ss_pred cchhhhhHHHHHHcCCCccchhhhhhhcc-----------chHHHHHHHhccCCcccccccCCCCCcc----CChhHHHH
Confidence 44444556778888877789998888765 4999999888876 78998 59999998
Q ss_pred hcc
Q 008470 367 ITP 369 (564)
Q Consensus 367 i~~ 369 (564)
|++
T Consensus 87 IR~ 89 (334)
T KOG3517|consen 87 IRS 89 (334)
T ss_pred HHH
Confidence 864
No 37
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=28.05 E-value=29 Score=36.51 Aligned_cols=20 Identities=40% Similarity=0.627 Sum_probs=17.5
Q ss_pred cceeeecccccccccHHHHH
Q 008470 425 KHAVVSGAFRRVGTTYAQLI 444 (564)
Q Consensus 425 k~aVVSGAhrRVgTTYAQLi 444 (564)
++||||||+-.+|-.||-=.
T Consensus 50 ~WAVVTGaTDGIGKayA~eL 69 (312)
T KOG1014|consen 50 SWAVVTGATDGIGKAYAREL 69 (312)
T ss_pred CEEEEECCCCcchHHHHHHH
Confidence 77999999999999998533
No 38
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.76 E-value=39 Score=31.57 Aligned_cols=23 Identities=35% Similarity=0.342 Sum_probs=19.5
Q ss_pred ccceeeeccc--ccccccHHHHHHH
Q 008470 424 AKHAVVSGAF--RRVGTTYAQLIAA 446 (564)
Q Consensus 424 Ak~aVVSGAh--rRVgTTYAQLiAA 446 (564)
-|.++||||+ +.+|-..|+-.|.
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~ 31 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKD 31 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHH
Confidence 4889999999 8999888887764
No 39
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=27.76 E-value=85 Score=21.50 Aligned_cols=24 Identities=25% Similarity=0.482 Sum_probs=18.3
Q ss_pred hhhcccchHHHHHHHHHHHHHHHh
Q 008470 322 RMLTNRSVRAVQAAVKCIRKVVNS 345 (564)
Q Consensus 322 RMl~nRs~rA~~AA~~Ci~k~~~~ 345 (564)
.++...+.+-+++|+.|+.++.+.
T Consensus 7 ~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 7 QLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhh
Confidence 566677778889999999988764
No 40
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=27.29 E-value=39 Score=31.25 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.3
Q ss_pred cccceeeecccccccccHHHHHHHH
Q 008470 423 RAKHAVVSGAFRRVGTTYAQLIAAL 447 (564)
Q Consensus 423 rAk~aVVSGAhrRVgTTYAQLiAAL 447 (564)
.-|.++||||++.||...|+..++.
T Consensus 6 ~~k~~lItGa~~gIG~~ia~~l~~~ 30 (261)
T PRK08936 6 EGKVVVITGGSTGLGRAMAVRFGKE 30 (261)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC
Confidence 4589999999999999999877653
No 41
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=27.21 E-value=38 Score=31.47 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=19.6
Q ss_pred ccceeeecccccccccHHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiAA 446 (564)
-|.++||||++.||-..|+..+.
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~ 30 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQ 30 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH
Confidence 47899999999999888876664
No 42
>PRK08267 short chain dehydrogenase; Provisional
Probab=26.74 E-value=40 Score=31.04 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.1
Q ss_pred cceeeecccccccccHHHHHHH
Q 008470 425 KHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 425 k~aVVSGAhrRVgTTYAQLiAA 446 (564)
|.++||||++.+|...++..+.
T Consensus 2 k~vlItGasg~iG~~la~~l~~ 23 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAA 23 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHH
Confidence 6789999999999999887654
No 43
>PF12835 Integrase_1: Integrase; InterPro: IPR024456 Phage integrase proteins cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. This entry represents the catalytic domain from a family of putative prophage DNA-binding integrases.
Probab=26.73 E-value=56 Score=31.11 Aligned_cols=73 Identities=16% Similarity=0.242 Sum_probs=55.2
Q ss_pred cCCchhHHHHHhhhhcCCCCCCceehhhhhcccchHHHHHHHHHHHHH-----HHh----cccC-----CCCeEEEEeCC
Q 008470 295 ISPSEDVEEAVKWVLGNGVDPDISLHMRMLTNRSVRAVQAAVKCIRKV-----VNS----LNLT-----SRPKTVIVSDT 360 (564)
Q Consensus 295 ISPs~dV~~AV~W~l~gg~~PDIslHmRMl~nRs~rA~~AA~~Ci~k~-----~~~----~hl~-----~rPrVvvVSDT 360 (564)
||+ ++++++++-+..- +|.+.+=|+|...==.|+-+|+..+-..+ +.. ++.. ++||.|-|+|+
T Consensus 14 ~~~-~~~~~~~~~~~~~--~~~~a~~l~Lq~~fGLR~~Ea~~l~~~~~~w~~~l~~~~~~~~v~~gtKGGr~R~v~I~~~ 90 (187)
T PF12835_consen 14 ISR-EEYNQVLANAEAQ--DPRVAAALELQRAFGLRREEALKLRPSLATWEKALERGDETLRVVVGTKGGRPREVPILDS 90 (187)
T ss_pred CCH-HHHHHHHHHHHhh--ChhhHHHHHHHHHhCCCHHHHHhccHhhhhHHHHHhcCCCceEEeecCCCCCcceecCCCc
Confidence 555 7899999998876 59999999988888888888877665544 322 2211 89999999999
Q ss_pred hhhhhhhccc
Q 008470 361 PSFAKTITPN 370 (564)
Q Consensus 361 Ps~vk~i~~~ 370 (564)
+.....+...
T Consensus 91 ~~~~~~L~~a 100 (187)
T PF12835_consen 91 EKQREALERA 100 (187)
T ss_pred HHHHHHHHHH
Confidence 9888776654
No 44
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.71 E-value=1.3e+02 Score=30.72 Aligned_cols=22 Identities=41% Similarity=0.644 Sum_probs=18.8
Q ss_pred ccceeeecccccccccHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIA 445 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiA 445 (564)
-|.++||||++.||...|+..+
T Consensus 210 g~~vlItGasggIG~~la~~l~ 231 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLA 231 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHH
Confidence 3789999999999988887665
No 45
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=26.56 E-value=40 Score=31.36 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.1
Q ss_pred ccceeeecccccccccHHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiAA 446 (564)
-|.++||||++.+|...|+.++.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~ 30 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAK 30 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH
Confidence 58999999999999998887664
No 46
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=26.48 E-value=3.3e+02 Score=26.92 Aligned_cols=74 Identities=12% Similarity=0.105 Sum_probs=47.9
Q ss_pred hhHHHHHhhhhcC------C-CCCCceehhhhhc-ccchHHHHHHHHHHHHHHHhcccCCCCeEEEEeCChhhhhhhccc
Q 008470 299 EDVEEAVKWVLGN------G-VDPDISLHMRMLT-NRSVRAVQAAVKCIRKVVNSLNLTSRPKTVIVSDTPSFAKTITPN 370 (564)
Q Consensus 299 ~dV~~AV~W~l~g------g-~~PDIslHmRMl~-nRs~rA~~AA~~Ci~k~~~~~hl~~rPrVvvVSDTPs~vk~i~~~ 370 (564)
+.++.|+++|+.. + ++..+.+|.+... .-|..|.++++..|+ +.-++||-.+.|-.-.....
T Consensus 11 ~~~~~a~~~Av~~iN~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~c~ll~----------~~V~aiiGp~~s~~~~~~~~ 80 (382)
T cd06380 11 DQEYSAFRFAISQHNTNPNSTAPFKLLPHVDNLDTSDSFALTNAICSQLS----------RGVFAIFGSYDKSSVNTLTS 80 (382)
T ss_pred hHHHHHHHHHHHHhcccccccCCeeeeeeeeEecccchHHHHHHHHHHHh----------cCcEEEEecCcHHHHHHHHH
Confidence 6677888888652 1 2234455677776 678899998877665 12556666655555555566
Q ss_pred hhhhhhhheecH
Q 008470 371 ISEFAEVLYFDY 382 (564)
Q Consensus 371 i~efaeVl~FDY 382 (564)
+.+..+|-+..+
T Consensus 81 ~~~~~~iP~i~~ 92 (382)
T cd06380 81 YSDALHVPFITP 92 (382)
T ss_pred HHhcCCCCeEec
Confidence 666677777665
No 47
>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 6 GT6 from CAZY comprises enzymes with three known activities; alpha-1,3-galactosyltransferase (2.4.1.151 from EC); alpha-1,3 N-acetylgalactosaminyltransferase (2.4.1.40 from EC); alpha-galactosyltransferase (2.4.1.37 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane; PDB: 2Y7A_B 2O1G_A 1R82_A 2RJ1_A 3IOJ_B 2RJ4_A 3I0C_A 3SX8_A 1ZJ1_A 3I0E_A ....
Probab=26.42 E-value=41 Score=35.83 Aligned_cols=52 Identities=25% Similarity=0.379 Sum_probs=23.5
Q ss_pred eeHHHHHHHHHHhCchhhcCCceeeeeccCCCCCCccccccCccccccceEEeccCcchHH
Q 008470 194 FTLEEVKHLWRRNGCLKKYGRHLVMRIDDFEKPPQTNVLCSNWRKWEQPIIWFQGTTDAVA 254 (564)
Q Consensus 194 FT~~EvKHLWr~~~C~~kYgR~L~mR~DdfekP~~TNvLCsdW~~w~qpIIWF~GTtDaVa 254 (564)
..++|..++|.++- .+++---|.|-.|.+++|+.- +.|.-|||| .||-|.-.
T Consensus 38 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~r~dv~t~--T~WlAPivW-egTf~~~~ 89 (337)
T PF03414_consen 38 MKLQEMYELPVVKL------SRELYPQPWFLPPKRPDVLTV--TPWLAPIVW-EGTFNRDI 89 (337)
T ss_dssp -------------------------HHHHCTCGCSTTS--B--ETTSEBEE--TTSB-HHH
T ss_pred hhhhccccCccccc------CccccCCcccCCCCCCccccc--CCccCcEee-cCcCCHHH
Confidence 34556656665543 233444577888899999865 678899998 89988764
No 48
>PRK05993 short chain dehydrogenase; Provisional
Probab=26.25 E-value=40 Score=31.85 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=19.8
Q ss_pred ccceeeecccccccccHHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiAA 446 (564)
-|.++||||++.+|...|+.++.
T Consensus 4 ~k~vlItGasggiG~~la~~l~~ 26 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQS 26 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHH
Confidence 36899999999999999887764
No 49
>PRK05611 rpmD 50S ribosomal protein L30; Reviewed
Probab=26.17 E-value=79 Score=25.65 Aligned_cols=30 Identities=30% Similarity=0.382 Sum_probs=25.9
Q ss_pred HHHHHHhcccCCCCeEEEEeCChhhhhhhc
Q 008470 339 IRKVVNSLNLTSRPKTVIVSDTPSFAKTIT 368 (564)
Q Consensus 339 i~k~~~~~hl~~rPrVvvVSDTPs~vk~i~ 368 (564)
.++.++.++|.+.-.+|++=|||++.--|+
T Consensus 19 ~r~tl~~LgL~k~~~~v~~~dtp~~rGmi~ 48 (59)
T PRK05611 19 QRATLRGLGLRKINSTVELEDTPAIRGMIN 48 (59)
T ss_pred HHHHHHHcCCCcCCCEEEecCCHHHHHHHH
Confidence 567888999999999999999999876554
No 50
>PRK08703 short chain dehydrogenase; Provisional
Probab=26.12 E-value=44 Score=30.38 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=19.9
Q ss_pred ccceeeecccccccccHHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiAA 446 (564)
-|+++||||++.+|.+.|+..+.
T Consensus 6 ~k~vlItG~sggiG~~la~~l~~ 28 (239)
T PRK08703 6 DKTILVTGASQGLGEQVAKAYAA 28 (239)
T ss_pred CCEEEEECCCCcHHHHHHHHHHH
Confidence 47899999999999999887754
No 51
>PRK07791 short chain dehydrogenase; Provisional
Probab=25.84 E-value=41 Score=32.25 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=19.8
Q ss_pred ccceeeecccccccccHHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiAA 446 (564)
-|.++||||++.+|-..|+..++
T Consensus 6 ~k~~lITGas~GIG~aia~~la~ 28 (286)
T PRK07791 6 GRVVIVTGAGGGIGRAHALAFAA 28 (286)
T ss_pred CCEEEEECCCchHHHHHHHHHHH
Confidence 47899999999999988877664
No 52
>PF00327 Ribosomal_L30: Ribosomal protein L30p/L7e; InterPro: IPR016082 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L30 is one of the proteins from the large ribosomal subunit. L30 belongs to a family of ribosomal proteins which, on the basis of sequence similarities [], groups bacteria and archaea L30, yeast mitochondrial L33, and Drosophila melanogaster, Dictyostelium discoideum (Slime mold), fungal and mammalian L7 ribosomal proteins. L30 from bacteria are small proteins of about 60 residues, those from archaea are proteins of about 150 residues, and eukaryotic L7 are proteins of about 250 to 270 residues. This entry represents a domain with a ferredoxin-like fold, with a core structure consisting of core: beta-alpha-beta-alpha-beta. This domain is found in prokaryotic ribosomal protein L30 (short-chain member of the family), as well as in archaeal L30 (L30a) (long-chain member of the family), the later containing an additional C-terminal (sub)domain).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3DF2_Y 3DF4_Y 3O5H_G 3O58_G 1S1I_F 3IZS_e 1M1K_X 1M90_X 1QVG_V 1YIT_W ....
Probab=25.73 E-value=95 Score=23.99 Aligned_cols=30 Identities=30% Similarity=0.510 Sum_probs=24.4
Q ss_pred HHHHHHhcccCCCCeEEEEeCChhhhhhhc
Q 008470 339 IRKVVNSLNLTSRPKTVIVSDTPSFAKTIT 368 (564)
Q Consensus 339 i~k~~~~~hl~~rPrVvvVSDTPs~vk~i~ 368 (564)
++++++.+.+.+.-..|++-|||++..-|+
T Consensus 17 ~~~tl~~LgL~k~~~~v~~~~t~~~~gml~ 46 (52)
T PF00327_consen 17 VRKTLKALGLRKINQAVFVKNTPSIRGMLK 46 (52)
T ss_dssp HHHHHHHTT-SSTTEEEEEESSHHHHHHHH
T ss_pred HHHHHHHcCCCcCCCEEEEECCHHHHHHHH
Confidence 567788999999999999999998875543
No 53
>PRK07856 short chain dehydrogenase; Provisional
Probab=25.40 E-value=44 Score=30.75 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=19.7
Q ss_pred ccceeeecccccccccHHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiAA 446 (564)
-|.++||||++.||...|+..++
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~ 28 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLA 28 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH
Confidence 48899999999999988877654
No 54
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=25.40 E-value=14 Score=27.30 Aligned_cols=45 Identities=29% Similarity=0.531 Sum_probs=27.4
Q ss_pred HHHHHHHHhhcCCCCCCCCCCchH--------HHhHHHhcCCchhHHHHHhhhhc
Q 008470 264 PEMRNAANDLFGHPESLHAQPNVF--------GELMRVLISPSEDVEEAVKWVLG 310 (564)
Q Consensus 264 p~Mr~AA~~LfG~p~~l~sRpN~F--------GELmr~~ISPs~dV~~AV~W~l~ 310 (564)
|++|.+|...+|. .....|... -.|+..|=.|+.+|.++.=|+|+
T Consensus 1 p~vR~~A~~aLg~--l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 1 PRVRRAAAWALGR--LAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHHHC--TTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhh--HhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 6789999999986 222333332 23333333566677777777765
No 55
>COG1841 RpmD Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]
Probab=25.16 E-value=80 Score=25.72 Aligned_cols=29 Identities=41% Similarity=0.547 Sum_probs=24.6
Q ss_pred HHHHHHhcccCCCCeEEEEeCChhhhhhh
Q 008470 339 IRKVVNSLNLTSRPKTVIVSDTPSFAKTI 367 (564)
Q Consensus 339 i~k~~~~~hl~~rPrVvvVSDTPs~vk~i 367 (564)
+++.++.+.|.+.-..|++-|||++---|
T Consensus 16 ~r~tl~~LgL~kin~~v~~~dtp~irGMi 44 (55)
T COG1841 16 IRKTLRLLGLRKINHTVIVEDTPAVRGML 44 (55)
T ss_pred HHHHHHHhCCCccCCEEEEcCCHHHHHHH
Confidence 56778899999999999999999975544
No 56
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=25.15 E-value=46 Score=30.55 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=18.8
Q ss_pred ccceeeecccccccccHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIA 445 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiA 445 (564)
-|.++||||++.+|...|+..+
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~ 29 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAA 29 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHH
Confidence 4789999999999998877655
No 57
>PF08665 PglZ: PglZ domain; InterPro: IPR013973 This entry is a member of the Alkaline phosphatase clan.
Probab=25.05 E-value=77 Score=29.27 Aligned_cols=46 Identities=26% Similarity=0.255 Sum_probs=33.9
Q ss_pred CCCceehhhhhcccchHHHHHHHH------HHHHHHHhcccCCCCeEEEEeCC
Q 008470 314 DPDISLHMRMLTNRSVRAVQAAVK------CIRKVVNSLNLTSRPKTVIVSDT 360 (564)
Q Consensus 314 ~PDIslHmRMl~nRs~rA~~AA~~------Ci~k~~~~~hl~~rPrVvvVSDT 360 (564)
.-|-.+|-+.-.....+++..++. =|.+.|+.+...++ +|+|+||=
T Consensus 121 ~ID~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~li~~l~~~~~-~V~ITsDH 172 (181)
T PF08665_consen 121 FIDDLGHKRKSEQLGFEAMYRAIELWWFEHELRSLIKELRNAGR-RVVITSDH 172 (181)
T ss_pred chhhhhCcccccchhHHHHHHHHhhhhhhHHHHHHHHHHHhcCc-eEEEECCC
Confidence 567777744445556677777777 77788888877766 89999994
No 58
>PRK07102 short chain dehydrogenase; Provisional
Probab=24.67 E-value=43 Score=30.49 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=18.7
Q ss_pred cceeeecccccccccHHHHHHH
Q 008470 425 KHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 425 k~aVVSGAhrRVgTTYAQLiAA 446 (564)
|.++||||++.+|...++..++
T Consensus 2 ~~vlItGas~giG~~~a~~l~~ 23 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAA 23 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHh
Confidence 5789999999999988886654
No 59
>PRK07985 oxidoreductase; Provisional
Probab=24.56 E-value=48 Score=32.03 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=19.8
Q ss_pred ccceeeecccccccccHHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiAA 446 (564)
-|.++||||++.||...|+..++
T Consensus 49 ~k~vlITGas~gIG~aia~~L~~ 71 (294)
T PRK07985 49 DRKALVTGGDSGIGRAAAIAYAR 71 (294)
T ss_pred CCEEEEECCCCcHHHHHHHHHHH
Confidence 37999999999999988877664
No 60
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.41 E-value=1.6e+02 Score=30.39 Aligned_cols=182 Identities=17% Similarity=0.192 Sum_probs=115.8
Q ss_pred ccccceEEeccCcchHHhHHHhhccCHHHHHHHHhhcCCCC------CCCCCCchHHHhHHHhcCCc------------h
Q 008470 238 KWEQPIIWFQGTTDAVAAQFFLKNVHPEMRNAANDLFGHPE------SLHAQPNVFGELMRVLISPS------------E 299 (564)
Q Consensus 238 ~w~qpIIWF~GTtDaVa~QffLKNvhp~Mr~AA~~LfG~p~------~l~sRpN~FGELmr~~ISPs------------~ 299 (564)
+|..-+.|--|.+--.|.+. |..|-..+. -..-|+-.-.|..|...++. +
T Consensus 9 ~~~~kvVvITGASsGIG~~l------------A~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~ 76 (282)
T KOG1205|consen 9 RLAGKVVLITGASSGIGEAL------------AYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEE 76 (282)
T ss_pred HhCCCEEEEeCCCcHHHHHH------------HHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHH
Confidence 46677777788777666543 222222222 12335555666666666666 8
Q ss_pred hHHHHHhhhhcCCCCCCcee-----------------hhhhhcccchHHHHHHHHHHHHHHHhcccCCCCeEEEEeCChh
Q 008470 300 DVEEAVKWVLGNGVDPDISL-----------------HMRMLTNRSVRAVQAAVKCIRKVVNSLNLTSRPKTVIVSDTPS 362 (564)
Q Consensus 300 dV~~AV~W~l~gg~~PDIsl-----------------HmRMl~nRs~rA~~AA~~Ci~k~~~~~hl~~rPrVvvVSDTPs 362 (564)
+++++++|+..--..-|+-+ |||-+|+=-+ -..+.|.+-++.++...++=+||+||-.-.
T Consensus 77 ~~~~~~~~~~~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~---~G~V~~Tk~alp~m~~r~~GhIVvisSiaG 153 (282)
T KOG1205|consen 77 SVKKFVEWAIRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNV---FGTVYLTKAALPSMKKRNDGHIVVISSIAG 153 (282)
T ss_pred HHHHHHHHHHHhcCCCCEEEecCccccccccccCcHHHHHHHhhhhc---hhhHHHHHHHHHHhhhcCCCeEEEEecccc
Confidence 89999999995545555543 4554444332 356789999999887777689999986542
Q ss_pred --------hhhhhccchhhhhhhheecHHhhhcccccc-CCCCCCccc---cc------cccCCCCchhHHHHHHHhccc
Q 008470 363 --------FAKTITPNISEFAEVLYFDYKAFRGNISHD-VNRLPSLEF---RA------KDWGPAPRWVAFVDFFLASRA 424 (564)
Q Consensus 363 --------~vk~i~~~i~efaeVl~FDYk~f~~~~~~~-~~~~~~ldf---R~------rDWG~aPRWVAfVDFFLAsrA 424 (564)
+-..=|-.|..|.|-|+.-+..+..++.-. --|.-..+| +. .++++..++....| +.+-
T Consensus 154 ~~~~P~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i~V~PG~V~Te~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 230 (282)
T KOG1205|consen 154 KMPLPFRSIYSASKHALEGFFETLRQELIPLGTIIIILVSPGPIETEFTGKELLGEEGKSQQGPFLRTEDVAD---PEAV 230 (282)
T ss_pred ccCCCcccccchHHHHHHHHHHHHHHHhhccCceEEEEEecCceeecccchhhccccccccccchhhhhhhhh---HHHH
Confidence 233334567888899888888877654200 011111221 11 56778888877766 6677
Q ss_pred cceeeeccccccc
Q 008470 425 KHAVVSGAFRRVG 437 (564)
Q Consensus 425 k~aVVSGAhrRVg 437 (564)
.|++.++.++.|.
T Consensus 231 ~~~i~~~~~~~~~ 243 (282)
T KOG1205|consen 231 AYAISTPPCRQVE 243 (282)
T ss_pred HHHHhcCcccchh
Confidence 8899999998873
No 61
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=24.36 E-value=1.3e+02 Score=27.34 Aligned_cols=67 Identities=6% Similarity=0.113 Sum_probs=41.1
Q ss_pred CCchhHHHHHhhhhcCCCCCCceehhhhhc------ccchH--------HHHHHHHHHHHHHHhcccCCCCeEEEEeCCh
Q 008470 296 SPSEDVEEAVKWVLGNGVDPDISLHMRMLT------NRSVR--------AVQAAVKCIRKVVNSLNLTSRPKTVIVSDTP 361 (564)
Q Consensus 296 SPs~dV~~AV~W~l~gg~~PDIslHmRMl~------nRs~r--------A~~AA~~Ci~k~~~~~hl~~rPrVvvVSDTP 361 (564)
+-.++++++++.+..-...+|+.+|.=-.. +-+.. -+..+.+.++.++..+...+.+++|.+|.+-
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~ 142 (258)
T PRK12429 63 TDEEAINAGIDYAVETFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVH 142 (258)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchh
Confidence 456677888877765445789988854221 11111 2234455566666666556678999998764
Q ss_pred h
Q 008470 362 S 362 (564)
Q Consensus 362 s 362 (564)
+
T Consensus 143 ~ 143 (258)
T PRK12429 143 G 143 (258)
T ss_pred h
Confidence 3
No 62
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.29 E-value=48 Score=31.66 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=19.5
Q ss_pred ccceeeecccc--cccccHHHHHHH
Q 008470 424 AKHAVVSGAFR--RVGTTYAQLIAA 446 (564)
Q Consensus 424 Ak~aVVSGAhr--RVgTTYAQLiAA 446 (564)
-|.++||||++ .+|-.-|+..|+
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~ 31 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAA 31 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHh
Confidence 38999999997 999988887765
No 63
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=24.26 E-value=62 Score=28.94 Aligned_cols=57 Identities=25% Similarity=0.426 Sum_probs=39.5
Q ss_pred CCchhHHHHHhhhhcCC-CCCCceehhhh--hcccchHHHHHHHHHHHHHHHhcccCCCCeEEE
Q 008470 296 SPSEDVEEAVKWVLGNG-VDPDISLHMRM--LTNRSVRAVQAAVKCIRKVVNSLNLTSRPKTVI 356 (564)
Q Consensus 296 SPs~dV~~AV~W~l~gg-~~PDIslHmRM--l~nRs~rA~~AA~~Ci~k~~~~~hl~~rPrVvv 356 (564)
+|+..+++.|+.|-... .+||...-|.+ +.|....+.+.|+++|+|=+++ +.|+|++
T Consensus 1 ~~~~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~----~~~~vq~ 60 (140)
T PF00790_consen 1 QPSSSITELIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKH----GNPNVQL 60 (140)
T ss_dssp CCCSHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTT----SSHHHHH
T ss_pred CCCChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhC----CCHHHHH
Confidence 47778888888887665 78888887765 4566677888888889876655 5666654
No 64
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=24.23 E-value=34 Score=34.43 Aligned_cols=27 Identities=33% Similarity=0.385 Sum_probs=22.9
Q ss_pred cccceeeecc--cccccccHHHHHHHHHH
Q 008470 423 RAKHAVVSGA--FRRVGTTYAQLIAALAA 449 (564)
Q Consensus 423 rAk~aVVSGA--hrRVgTTYAQLiAALAA 449 (564)
.-|.++|||| ++.+|-.-|+..|+..|
T Consensus 8 ~gk~alITGa~~s~GIG~a~A~~la~~Ga 36 (303)
T PLN02730 8 RGKRAFIAGVADDNGYGWAIAKALAAAGA 36 (303)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHHCCC
Confidence 3589999999 89999999998887644
No 65
>PRK06057 short chain dehydrogenase; Provisional
Probab=24.12 E-value=48 Score=30.52 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.1
Q ss_pred cceeeecccccccccHHHHHHHH
Q 008470 425 KHAVVSGAFRRVGTTYAQLIAAL 447 (564)
Q Consensus 425 k~aVVSGAhrRVgTTYAQLiAAL 447 (564)
|..+||||++.+|...++..++.
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~ 30 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAE 30 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHc
Confidence 67899999999999999887753
No 66
>PRK09291 short chain dehydrogenase; Provisional
Probab=24.09 E-value=48 Score=30.19 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=18.6
Q ss_pred cceeeecccccccccHHHHHHH
Q 008470 425 KHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 425 k~aVVSGAhrRVgTTYAQLiAA 446 (564)
|..+||||++.||...++..+.
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~ 24 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLAR 24 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHH
Confidence 5789999999999988876653
No 67
>PRK07577 short chain dehydrogenase; Provisional
Probab=24.05 E-value=1.7e+02 Score=26.31 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=38.1
Q ss_pred chhHHHHHhhhhcCCCCCCceehhhhhcccc------hH--------HHHHHHHHHHHHHHhcccCCCCeEEEEeCCh
Q 008470 298 SEDVEEAVKWVLGNGVDPDISLHMRMLTNRS------VR--------AVQAAVKCIRKVVNSLNLTSRPKTVIVSDTP 361 (564)
Q Consensus 298 s~dV~~AV~W~l~gg~~PDIslHmRMl~nRs------~r--------A~~AA~~Ci~k~~~~~hl~~rPrVvvVSDTP 361 (564)
.++++++++.+...+ .+|+.+|.-...... .. -.....++++.++..+...+..++|.+|.+.
T Consensus 53 ~~~~~~~~~~~~~~~-~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~ 129 (234)
T PRK07577 53 IEQTAATLAQINEIH-PVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRA 129 (234)
T ss_pred HHHHHHHHHHHHHhC-CCcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 456777787776654 589998865543321 11 1233455566555555444556899998863
No 68
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.98 E-value=47 Score=32.26 Aligned_cols=24 Identities=42% Similarity=0.398 Sum_probs=20.8
Q ss_pred ccceeeecccccccccHHHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIAAL 447 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiAAL 447 (564)
-|.++||||++.+|-.+|+..++-
T Consensus 12 ~k~~lVTGas~gIG~~ia~~L~~~ 35 (306)
T PRK07792 12 GKVAVVTGAAAGLGRAEALGLARL 35 (306)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC
Confidence 378999999999999999877754
No 69
>KOG4095 consensus Uncharacterized conserved protein (tumor-specific protein BCL7 in humans) [General function prediction only]
Probab=23.92 E-value=44 Score=32.64 Aligned_cols=38 Identities=37% Similarity=0.427 Sum_probs=28.5
Q ss_pred hcccchHHH--HHHHHHHHHHHHhcccCC--CCeEEEEeCCh
Q 008470 324 LTNRSVRAV--QAAVKCIRKVVNSLNLTS--RPKTVIVSDTP 361 (564)
Q Consensus 324 l~nRs~rA~--~AA~~Ci~k~~~~~hl~~--rPrVvvVSDTP 361 (564)
|.+||+||- --|-.=|||+|+.+.-.+ -.|-|.|.||-
T Consensus 1 msgRSvRAETRsRAKDDIKkVMaaiEKVRrWEKKwVtvgDTs 42 (165)
T KOG4095|consen 1 MSGRSVRAETRSRAKDDIKKVMAAIEKVRRWEKKWVTVGDTS 42 (165)
T ss_pred CCccchhhhhhhhhHHHHHHHHHHHHHHHHHhhheEeecccc
Confidence 457999984 457788999998874442 24789999995
No 70
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.36 E-value=52 Score=30.81 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.0
Q ss_pred ccceeeeccc--ccccccHHHHHHHH
Q 008470 424 AKHAVVSGAF--RRVGTTYAQLIAAL 447 (564)
Q Consensus 424 Ak~aVVSGAh--rRVgTTYAQLiAAL 447 (564)
-|.++||||+ +.+|-..|+..|..
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~ 35 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRAL 35 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHc
Confidence 4899999998 69999888877653
No 71
>PRK06483 dihydromonapterin reductase; Provisional
Probab=23.21 E-value=51 Score=29.92 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=18.9
Q ss_pred cceeeecccccccccHHHHHHH
Q 008470 425 KHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 425 k~aVVSGAhrRVgTTYAQLiAA 446 (564)
|.++||||++.+|..-|+.++.
T Consensus 3 k~vlItGas~gIG~~ia~~l~~ 24 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLA 24 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHH
Confidence 6899999999999988876654
No 72
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.13 E-value=52 Score=31.65 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=20.0
Q ss_pred cccceeeeccc--ccccccHHHHHHH
Q 008470 423 RAKHAVVSGAF--RRVGTTYAQLIAA 446 (564)
Q Consensus 423 rAk~aVVSGAh--rRVgTTYAQLiAA 446 (564)
+-|+++||||+ +.+|-..|+..|+
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~ 29 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFE 29 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHH
Confidence 45899999997 8999888877765
No 73
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.13 E-value=53 Score=30.26 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=19.5
Q ss_pred ccceeeecccccccccHHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiAA 446 (564)
-|.++||||++.||...|+.++.
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~ 29 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLR 29 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 37899999999999988876654
No 74
>PRK12367 short chain dehydrogenase; Provisional
Probab=23.05 E-value=49 Score=31.52 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=18.6
Q ss_pred ccceeeecccccccccHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIA 445 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiA 445 (564)
-|.++||||++.+|..-|+-.+
T Consensus 14 ~k~~lITGas~gIG~ala~~l~ 35 (245)
T PRK12367 14 GKRIGITGASGALGKALTKAFR 35 (245)
T ss_pred CCEEEEEcCCcHHHHHHHHHHH
Confidence 4789999999999988877654
No 75
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.60 E-value=53 Score=29.90 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=18.8
Q ss_pred cceeeecccccccccHHHHHHHH
Q 008470 425 KHAVVSGAFRRVGTTYAQLIAAL 447 (564)
Q Consensus 425 k~aVVSGAhrRVgTTYAQLiAAL 447 (564)
|.++||||++.||..-|+..++.
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~ 25 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAA 25 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHC
Confidence 67999999999999777666543
No 76
>PRK08177 short chain dehydrogenase; Provisional
Probab=22.36 E-value=55 Score=29.66 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.0
Q ss_pred cceeeecccccccccHHHHHHHH
Q 008470 425 KHAVVSGAFRRVGTTYAQLIAAL 447 (564)
Q Consensus 425 k~aVVSGAhrRVgTTYAQLiAAL 447 (564)
|.++||||++.+|...|+..++.
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~ 24 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLER 24 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhC
Confidence 67999999999999988887753
No 77
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=22.35 E-value=77 Score=28.28 Aligned_cols=29 Identities=41% Similarity=0.742 Sum_probs=19.8
Q ss_pred HHhHHHhcCCchhHHHHHhhhhcCCCCCCceeh
Q 008470 288 GELMRVLISPSEDVEEAVKWVLGNGVDPDISLH 320 (564)
Q Consensus 288 GELmr~~ISPs~dV~~AV~W~l~gg~~PDIslH 320 (564)
|+|.|++ ..|+++.|=.--.|.+|||.|-
T Consensus 5 ~~li~il----~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 5 GDLIRIL----ELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHH----HHHHHHHHHHHHTT----EEEE
T ss_pred hhHHHHH----HHHHHHHHHHHhcCCCCCEEEE
Confidence 6677766 6788888888888999999874
No 78
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=22.18 E-value=55 Score=30.28 Aligned_cols=24 Identities=33% Similarity=0.297 Sum_probs=20.8
Q ss_pred ccceeeecccccccccHHHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIAAL 447 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiAAL 447 (564)
-|.++||||++.||..-|+..+..
T Consensus 10 ~k~~lItG~~~gIG~a~a~~l~~~ 33 (253)
T PRK08993 10 GKVAVVTGCDTGLGQGMALGLAEA 33 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC
Confidence 489999999999999999877653
No 79
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=22.14 E-value=60 Score=26.94 Aligned_cols=49 Identities=31% Similarity=0.396 Sum_probs=33.7
Q ss_pred CCchHHHhHHHhcCCchhHHHHHhhhhcCCCCCCceehhhhhcccchHHHHHHHHHHHHHH
Q 008470 283 QPNVFGELMRVLISPSEDVEEAVKWVLGNGVDPDISLHMRMLTNRSVRAVQAAVKCIRKVV 343 (564)
Q Consensus 283 RpN~FGELmr~~ISPs~dV~~AV~W~l~gg~~PDIslHmRMl~nRs~rA~~AA~~Ci~k~~ 343 (564)
||.++|.|. -+|.+.+..+.||+.+||+--+ .|++ .-.+.|..||+..-
T Consensus 1 ~~gv~G~l~-dli~v~~~~~~Ave~~LG~~l~-~iVV----------~~~~~a~~~i~~l~ 49 (120)
T PF06470_consen 1 RPGVLGRLA-DLIEVDPKYEKAVEAALGGRLQ-AIVV----------EDEETAKKIIEFLK 49 (120)
T ss_dssp -TTEEEEGG-GSEEESGGGHHHHHHHHGGGGG-SEEE----------SSHHHHHHHHHHHH
T ss_pred CCCeeeeHH-hceecCHHHHHHHHHHHHHhhc-eEEE----------CcHHHHHHHHHHHh
Confidence 566677654 4677799999999999998332 4443 33467888888554
No 80
>PRK07478 short chain dehydrogenase; Provisional
Probab=22.03 E-value=57 Score=29.93 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=19.0
Q ss_pred ccceeeecccccccccHHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiAA 446 (564)
-|.++||||++.+|...|+..+.
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~ 28 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAR 28 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 47899999999999988775553
No 81
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=21.91 E-value=57 Score=29.58 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=19.9
Q ss_pred cceeeecccccccccHHHHHHHH
Q 008470 425 KHAVVSGAFRRVGTTYAQLIAAL 447 (564)
Q Consensus 425 k~aVVSGAhrRVgTTYAQLiAAL 447 (564)
|.++||||++.||..-|+.++..
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~ 26 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKD 26 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHc
Confidence 78999999999999988877654
No 82
>PRK07062 short chain dehydrogenase; Provisional
Probab=21.84 E-value=57 Score=30.13 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=20.2
Q ss_pred cccceeeecccccccccHHHHHHH
Q 008470 423 RAKHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 423 rAk~aVVSGAhrRVgTTYAQLiAA 446 (564)
.-|.++||||++.+|-..|+..++
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~ 30 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLE 30 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHH
Confidence 357899999999999988877764
No 83
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=21.80 E-value=74 Score=27.43 Aligned_cols=88 Identities=17% Similarity=0.183 Sum_probs=59.5
Q ss_pred hhccCHHHHHHHHhhcCCCCCCCCCCchHHHhHHHhcCCchhHHHHHhhhhcCCCCCCceehhhhhcccchHHHHHHHHH
Q 008470 259 LKNVHPEMRNAANDLFGHPESLHAQPNVFGELMRVLISPSEDVEEAVKWVLGNGVDPDISLHMRMLTNRSVRAVQAAVKC 338 (564)
Q Consensus 259 LKNvhp~Mr~AA~~LfG~p~~l~sRpN~FGELmr~~ISPs~dV~~AV~W~l~gg~~PDIslHmRMl~nRs~rA~~AA~~C 338 (564)
.+.+.-+.-.+..+.||.|.. -+-+-+-|. .+-..+|-.+|=+.+|..+.-.|+...-++-...
T Consensus 17 ~~~~~~~~~~~l~~~lgkPe~----------~~~v~~~~~------~~m~f~g~~~p~a~v~i~~~g~~~~e~k~~l~~~ 80 (116)
T PTZ00397 17 ADAALSDIENAIADVLGKPLS----------YIMSGYDYQ------KHMRFGGSHDGCCFVRVTSIGGISRSNNSSIAAA 80 (116)
T ss_pred HHHHHHHHHHHHHHHhCCChH----------HEEEEEeCC------ceEEECCCCCceEEEEEEEecCCCHHHHHHHHHH
Confidence 344455566788899999976 122222222 2333447788999999999999998888888889
Q ss_pred HHHHHHh-cccCCCCeEEEEeCChh
Q 008470 339 IRKVVNS-LNLTSRPKTVIVSDTPS 362 (564)
Q Consensus 339 i~k~~~~-~hl~~rPrVvvVSDTPs 362 (564)
|.+.++. ++..+.-=.|+++|.+.
T Consensus 81 i~~~l~~~lgi~~~rv~I~f~~~~~ 105 (116)
T PTZ00397 81 ITKILASHLKVKSERVYIEFKDCSA 105 (116)
T ss_pred HHHHHHHHhCcCcccEEEEEEECCh
Confidence 9888866 55555534455566653
No 84
>PF09292 Neil1-DNA_bind: Endonuclease VIII-like 1, DNA bind; InterPro: IPR015371 This domain is predominantly found in Endonuclease VIII-like 1 proteins and adopts a glucocorticoid receptor-like fold. Structural analysis reveals a zincless finger motif that is required for glycosylase activity []. ; PDB: 1TDH_A.
Probab=21.65 E-value=42 Score=26.29 Aligned_cols=12 Identities=50% Similarity=1.071 Sum_probs=6.5
Q ss_pred eEEeccCcchHH
Q 008470 243 IIWFQGTTDAVA 254 (564)
Q Consensus 243 IIWF~GTtDaVa 254 (564)
-|||||.....|
T Consensus 27 TiWFqGdPGpla 38 (39)
T PF09292_consen 27 TIWFQGDPGPLA 38 (39)
T ss_dssp EEEESS---TT-
T ss_pred EEEeeCCCCCCC
Confidence 599999877654
No 85
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=21.63 E-value=2e+02 Score=29.37 Aligned_cols=99 Identities=18% Similarity=0.223 Sum_probs=68.6
Q ss_pred ceeeecccccccccHHHHHHHHHHhhhcCCCCCCCcceeeccchhh------hhhhhhcccccccccccccCCcccCCCC
Q 008470 426 HAVVSGAFRRVGTTYAQLIAALAAANSLGDNSTDLSFSFLSSFQSN------LLTGGLRLQVGWGHVWNRFAGPLSCHHQ 499 (564)
Q Consensus 426 ~aVVSGAhrRVgTTYAQLiAALAAAn~l~~~~s~~~f~flSSfqsn------LL~~GL~~Q~GWGHvWnrfaGpLSC~nQ 499 (564)
-.|-+|.|++.||.-|.+.|...|...+ ..++.|.|++++ ..--+.--|.|=++|.--...|
T Consensus 30 ~ii~~g~n~~~~~~HAE~~ai~~a~~~~------~g~tlyvtlEPC~~~g~~~~C~~ai~~~gi~~vv~~~~d~------ 97 (344)
T TIGR00326 30 EIVGEGAHQKAGEPHAEVHALRQAGENA------KGATAYVTLEPCSHQGRTPPCAEAIIEAGIKKVVVSMQDP------ 97 (344)
T ss_pred EEEEEeeCCCCCCCCHHHHHHHHhcccc------CCcEEEEeCCCCCCCCCCcHHHHHHHHcCCCEEEEEeCCC------
Confidence 3455688888899999998887776543 679999999999 5677888889999986443322
Q ss_pred CCccccCCCCCCcccccccCCCchHHHHHHHhcCceeccccccchH---HHHHhhhhcc
Q 008470 500 SHQCAFTPLLPPAWWDGLWESPIPRDINRLAAFGVHLSGFGTVDEN---RLQSFCSSKK 555 (564)
Q Consensus 500 ~~QCA~TPLLP~aWWDg~WQSPipRDirrL~~yGi~ls~~G~VdE~---~L~~~C~srK 555 (564)
...-..+.+..|++.||++. .|-..|+ -+..|...++
T Consensus 98 ------------------~~~~~~~~~~~l~~~gi~v~-~~~~~~e~~~l~~~f~~~~~ 137 (344)
T TIGR00326 98 ------------------NPLVAGRGAERLKQAGIEVT-FGILKEEAERLNKGFLKRMR 137 (344)
T ss_pred ------------------CccccchHHHHHhcCCcEEE-eCCCHHHHHHHHHHHHHhhh
Confidence 01112366788999999986 3434433 3456765444
No 86
>PRK06523 short chain dehydrogenase; Provisional
Probab=21.54 E-value=63 Score=29.67 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=18.9
Q ss_pred ccceeeecccccccccHHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiAA 446 (564)
-|.++||||++.||...|+..++
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~ 31 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLE 31 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHH
Confidence 37899999999999877766654
No 87
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=21.22 E-value=2.1e+02 Score=25.85 Aligned_cols=67 Identities=7% Similarity=0.114 Sum_probs=40.8
Q ss_pred hcCCchhHHHHHhhhhcCCCCCCceehhhhhc------ccchH--------HHHHHHHHHHHHHHhcccCCCCeEEEEeC
Q 008470 294 LISPSEDVEEAVKWVLGNGVDPDISLHMRMLT------NRSVR--------AVQAAVKCIRKVVNSLNLTSRPKTVIVSD 359 (564)
Q Consensus 294 ~ISPs~dV~~AV~W~l~gg~~PDIslHmRMl~------nRs~r--------A~~AA~~Ci~k~~~~~hl~~rPrVvvVSD 359 (564)
=++-.++++++++.+..--..+|+.+|.--.. ..+.. ....+..+++.+++.+...+..++|.+|.
T Consensus 58 D~~~~~~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss 137 (255)
T TIGR01963 58 DVTKEDEIADMIAAAAAEFGGLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIAS 137 (255)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 34566788888887765434578777754211 11111 23455666776666665566679999986
Q ss_pred C
Q 008470 360 T 360 (564)
Q Consensus 360 T 360 (564)
.
T Consensus 138 ~ 138 (255)
T TIGR01963 138 A 138 (255)
T ss_pred h
Confidence 5
No 88
>PF13245 AAA_19: Part of AAA domain
Probab=21.13 E-value=1.6e+02 Score=24.26 Aligned_cols=37 Identities=8% Similarity=0.147 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcccCCCCeEEEEeCChhhhhhhccch
Q 008470 334 AAVKCIRKVVNSLNLTSRPKTVIVSDTPSFAKTITPNI 371 (564)
Q Consensus 334 AA~~Ci~k~~~~~hl~~rPrVvvVSDTPs~vk~i~~~i 371 (564)
.+.+++...+...... ..+|++++-|-..+++|.+.+
T Consensus 26 ~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 26 TLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 5666666666543333 559999999999999998887
No 89
>PF14851 FAM176: FAM176 family
Probab=21.08 E-value=5e+02 Score=25.08 Aligned_cols=20 Identities=30% Similarity=0.435 Sum_probs=14.1
Q ss_pred chhhhHHHHHHHHHHHhccc
Q 008470 106 QEESLKVRKLIQRHFDLNGA 125 (564)
Q Consensus 106 ~~~sLRvR~~I~~hf~l~GA 125 (564)
+++-|-=|+.|-+-+=.||-
T Consensus 121 ~A~rlEeRe~iirEIW~n~~ 140 (153)
T PF14851_consen 121 RAQRLEERERIIREIWMNGQ 140 (153)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 46777778887777766663
No 90
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=21.06 E-value=2.6e+02 Score=24.97 Aligned_cols=83 Identities=12% Similarity=0.159 Sum_probs=49.9
Q ss_pred hHHHhHHHhc-CCchhHHHHHhhhhcCCCCCCceehhhhhcccchHHHHHHHHHHHHHHHhcccCCCCeEEEEeCChhhh
Q 008470 286 VFGELMRVLI-SPSEDVEEAVKWVLGNGVDPDISLHMRMLTNRSVRAVQAAVKCIRKVVNSLNLTSRPKTVIVSDTPSFA 364 (564)
Q Consensus 286 ~FGELmr~~I-SPs~dV~~AV~W~l~gg~~PDIslHmRMl~nRs~rA~~AA~~Ci~k~~~~~hl~~rPrVvvVSDTPs~v 364 (564)
++-+|.+.-+ +|++-=++|++-.+.| . |+.+..--=.-|+.-...+++..+. +. +...+|||+||+-|-+++
T Consensus 10 i~~~l~~~~~~~~~~~Q~~~~~~~~~~-~--~~li~~~TG~GKT~~~~~~~l~~~~---~~-~~~~~~~viii~p~~~L~ 82 (203)
T cd00268 10 LLRGIYALGFEKPTPIQARAIPPLLSG-R--DVIGQAQTGSGKTAAFLIPILEKLD---PS-PKKDGPQALILAPTRELA 82 (203)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhcC-C--cEEEECCCCCcHHHHHHHHHHHHHH---hh-cccCCceEEEEcCCHHHH
Confidence 3444443323 4777777888877774 3 4666554444444443334443333 22 123678999999998888
Q ss_pred hhhccchhhhh
Q 008470 365 KTITPNISEFA 375 (564)
Q Consensus 365 k~i~~~i~efa 375 (564)
..+...+.++.
T Consensus 83 ~q~~~~~~~~~ 93 (203)
T cd00268 83 LQIAEVARKLG 93 (203)
T ss_pred HHHHHHHHHHh
Confidence 88877776654
No 91
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.05 E-value=2.3e+02 Score=25.22 Aligned_cols=68 Identities=15% Similarity=0.128 Sum_probs=40.6
Q ss_pred cCCchhHHHHHhhhhcCCCCCCceehhhhhcccch------H--------HHHHHHHHHHHHHHhcccCCCCeEEEEeCC
Q 008470 295 ISPSEDVEEAVKWVLGNGVDPDISLHMRMLTNRSV------R--------AVQAAVKCIRKVVNSLNLTSRPKTVIVSDT 360 (564)
Q Consensus 295 ISPs~dV~~AV~W~l~gg~~PDIslHmRMl~nRs~------r--------A~~AA~~Ci~k~~~~~hl~~rPrVvvVSDT 360 (564)
++-.++|+++++-+...-.++|+.+|.--..+... . -+.++.++++.+++.+...+.+++|.+|=.
T Consensus 65 ~~~~~~v~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~ 144 (249)
T PRK12825 65 VTDKAALEAAVAAAVERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSV 144 (249)
T ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 34456677777655444357899988654332211 0 123455666766666655667899999854
Q ss_pred hh
Q 008470 361 PS 362 (564)
Q Consensus 361 Ps 362 (564)
..
T Consensus 145 ~~ 146 (249)
T PRK12825 145 AG 146 (249)
T ss_pred cc
Confidence 43
No 92
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=20.92 E-value=62 Score=29.42 Aligned_cols=24 Identities=33% Similarity=0.338 Sum_probs=20.0
Q ss_pred cccceeeecccccccccHHHHHHH
Q 008470 423 RAKHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 423 rAk~aVVSGAhrRVgTTYAQLiAA 446 (564)
+-|.++||||++.||...|+..+.
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~ 27 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAE 27 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHH
Confidence 458899999999999988876654
No 93
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.89 E-value=62 Score=29.17 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=19.3
Q ss_pred ccceeeecccccccccHHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiAA 446 (564)
-|.++||||++.||...|...+.
T Consensus 5 ~k~~lVtGas~~iG~~ia~~l~~ 27 (235)
T PRK06550 5 TKTVLITGAASGIGLAQARAFLA 27 (235)
T ss_pred CCEEEEcCCCchHHHHHHHHHHH
Confidence 37899999999999988876654
No 94
>PRK06123 short chain dehydrogenase; Provisional
Probab=20.86 E-value=61 Score=29.34 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=18.4
Q ss_pred cceeeecccccccccHHHHHHH
Q 008470 425 KHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 425 k~aVVSGAhrRVgTTYAQLiAA 446 (564)
|.++||||++.+|...|+-.+.
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~ 24 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAE 24 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHH
Confidence 5789999999999988876553
No 95
>PRK08303 short chain dehydrogenase; Provisional
Probab=20.85 E-value=58 Score=32.06 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=19.5
Q ss_pred ccceeeecccccccccHHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiAA 446 (564)
-|+++||||++.+|-.-|+-++.
T Consensus 8 ~k~~lITGgs~GIG~aia~~la~ 30 (305)
T PRK08303 8 GKVALVAGATRGAGRGIAVELGA 30 (305)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH
Confidence 48999999999999887776655
No 96
>PRK05876 short chain dehydrogenase; Provisional
Probab=20.83 E-value=62 Score=30.91 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=19.8
Q ss_pred ccceeeecccccccccHHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiAA 446 (564)
-|.++||||++.+|...|+..++
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~ 28 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFAR 28 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH
Confidence 47899999999999998887664
No 97
>PRK05867 short chain dehydrogenase; Provisional
Probab=20.77 E-value=61 Score=29.83 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=20.8
Q ss_pred cccceeeecccccccccHHHHHHHH
Q 008470 423 RAKHAVVSGAFRRVGTTYAQLIAAL 447 (564)
Q Consensus 423 rAk~aVVSGAhrRVgTTYAQLiAAL 447 (564)
.-|.++||||++.+|...|+.++..
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~ 32 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEA 32 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC
Confidence 3588999999999999888877643
No 98
>PRK07024 short chain dehydrogenase; Provisional
Probab=20.72 E-value=59 Score=30.08 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.3
Q ss_pred cceeeecccccccccHHHHHHH
Q 008470 425 KHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 425 k~aVVSGAhrRVgTTYAQLiAA 446 (564)
|.++||||++.+|+..|+..+.
T Consensus 3 ~~vlItGas~gIG~~la~~l~~ 24 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYAR 24 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHH
Confidence 6799999999999999887764
No 99
>PRK07063 short chain dehydrogenase; Provisional
Probab=20.62 E-value=63 Score=29.76 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=19.3
Q ss_pred ccceeeecccccccccHHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiAA 446 (564)
-|.++||||++.+|..-|+..++
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~ 29 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAR 29 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHH
Confidence 47899999999999887776654
No 100
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=20.46 E-value=66 Score=30.03 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=18.8
Q ss_pred ccceeeecccccccccHHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiAA 446 (564)
++.++||||++.+|-.-++-.+.
T Consensus 1 ~~~~lITGas~gIG~~~a~~l~~ 23 (267)
T TIGR02685 1 APAAVVTGAAKRIGSSIAVALHQ 23 (267)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHh
Confidence 46899999999999887776553
No 101
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=20.33 E-value=1.1e+02 Score=30.02 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=28.9
Q ss_pred chHHHHHHHhcCce------eccccccchHHHHHhhhhccce
Q 008470 522 IPRDINRLAAFGVH------LSGFGTVDENRLQSFCSSKKNS 557 (564)
Q Consensus 522 ipRDirrL~~yGi~------ls~~G~VdE~~L~~~C~srK~~ 557 (564)
+-+||+.+++.|+. |+..|+||++.++...+..+..
T Consensus 74 M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~ 115 (201)
T PF03932_consen 74 MKEDIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAGGM 115 (201)
T ss_dssp HHHHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcCCC
Confidence 46899999999875 7899999999999998877643
No 102
>PRK08265 short chain dehydrogenase; Provisional
Probab=20.33 E-value=64 Score=30.13 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=19.8
Q ss_pred ccceeeecccccccccHHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiAA 446 (564)
-|.++||||++.+|...|+-.+.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~ 28 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVA 28 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHH
Confidence 47899999999999998877664
No 103
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=20.27 E-value=65 Score=29.52 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=19.8
Q ss_pred cccceeeecccccccccHHHHHH
Q 008470 423 RAKHAVVSGAFRRVGTTYAQLIA 445 (564)
Q Consensus 423 rAk~aVVSGAhrRVgTTYAQLiA 445 (564)
..|.++||||++.+|...|+..+
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~ 32 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALA 32 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHH
Confidence 35889999999999999888665
No 104
>PRK07825 short chain dehydrogenase; Provisional
Probab=20.24 E-value=63 Score=30.11 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=18.5
Q ss_pred cceeeecccccccccHHHHHHH
Q 008470 425 KHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 425 k~aVVSGAhrRVgTTYAQLiAA 446 (564)
|.++||||++.+|-..|+..+.
T Consensus 6 ~~ilVtGasggiG~~la~~l~~ 27 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAA 27 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHH
Confidence 6799999999999888876543
No 105
>PRK06841 short chain dehydrogenase; Provisional
Probab=20.24 E-value=1.9e+02 Score=26.41 Aligned_cols=69 Identities=17% Similarity=0.115 Sum_probs=41.7
Q ss_pred cCCchhHHHHHhhhhcCCCCCCceehhhhhcc-cchH-------------HHHHHHHHHHHHHHhcccCCCCeEEEEeCC
Q 008470 295 ISPSEDVEEAVKWVLGNGVDPDISLHMRMLTN-RSVR-------------AVQAAVKCIRKVVNSLNLTSRPKTVIVSDT 360 (564)
Q Consensus 295 ISPs~dV~~AV~W~l~gg~~PDIslHmRMl~n-Rs~r-------------A~~AA~~Ci~k~~~~~hl~~rPrVvvVSDT 360 (564)
++-.++++++++.+.+.-..+|+.+|.--... .+.. -..++.++++.+...+...+..|+|++|-.
T Consensus 70 l~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~ 149 (255)
T PRK06841 70 VSDSQSVEAAVAAVISAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQ 149 (255)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcch
Confidence 34556778888877665456888888664322 1110 023455666666555533456799999887
Q ss_pred hhh
Q 008470 361 PSF 363 (564)
Q Consensus 361 Ps~ 363 (564)
.++
T Consensus 150 ~~~ 152 (255)
T PRK06841 150 AGV 152 (255)
T ss_pred hhc
Confidence 654
No 106
>PRK06138 short chain dehydrogenase; Provisional
Probab=20.23 E-value=2.1e+02 Score=25.97 Aligned_cols=69 Identities=12% Similarity=0.074 Sum_probs=41.5
Q ss_pred cCCchhHHHHHhhhhcCCCCCCceehhhhhccc------chHH--------HHHHHHHHHHHHHhcccCCCCeEEEEeCC
Q 008470 295 ISPSEDVEEAVKWVLGNGVDPDISLHMRMLTNR------SVRA--------VQAAVKCIRKVVNSLNLTSRPKTVIVSDT 360 (564)
Q Consensus 295 ISPs~dV~~AV~W~l~gg~~PDIslHmRMl~nR------s~rA--------~~AA~~Ci~k~~~~~hl~~rPrVvvVSDT 360 (564)
++-.++++++++.+...-..+|+.+|--..... +... +....++.+.+++.+...+..+++++|.+
T Consensus 62 ~~~~~~~~~~~~~i~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~ 141 (252)
T PRK06138 62 VGSAEAVEALVDFVAARWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQ 141 (252)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECCh
Confidence 455678889999887765689999996554321 1111 12333444444444433345689999987
Q ss_pred hhh
Q 008470 361 PSF 363 (564)
Q Consensus 361 Ps~ 363 (564)
.+.
T Consensus 142 ~~~ 144 (252)
T PRK06138 142 LAL 144 (252)
T ss_pred hhc
Confidence 554
No 107
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=20.23 E-value=62 Score=31.65 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=18.8
Q ss_pred ccceeeecccccccccHHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiAA 446 (564)
-|.++||||++.+|-..|+-+++
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~ 25 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAA 25 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHH
Confidence 36899999999999887776554
No 108
>PRK05854 short chain dehydrogenase; Provisional
Probab=20.20 E-value=62 Score=31.65 Aligned_cols=23 Identities=43% Similarity=0.511 Sum_probs=19.4
Q ss_pred ccceeeecccccccccHHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiAA 446 (564)
-|+++||||++.+|...|+-++.
T Consensus 14 gk~~lITGas~GIG~~~a~~La~ 36 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAA 36 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 48999999999999888876553
No 109
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.20 E-value=65 Score=30.34 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=18.6
Q ss_pred ccceeeecc--cccccccHHHHHHH
Q 008470 424 AKHAVVSGA--FRRVGTTYAQLIAA 446 (564)
Q Consensus 424 Ak~aVVSGA--hrRVgTTYAQLiAA 446 (564)
-|+++|||| +|.+|-..|+..+.
T Consensus 6 ~k~~lITGa~~~~GIG~a~a~~l~~ 30 (261)
T PRK08690 6 GKKILITGMISERSIAYGIAKACRE 30 (261)
T ss_pred CcEEEEECCCCCCcHHHHHHHHHHH
Confidence 378999996 78999888876654
No 110
>PRK09687 putative lyase; Provisional
Probab=20.14 E-value=3.3e+02 Score=27.41 Aligned_cols=113 Identities=16% Similarity=0.190 Sum_probs=68.1
Q ss_pred hHHHhhccCHHHHHHHHhhcCCCCCCCC--CCchHHHhHHHhcCCchhHHHHHhhhhcCCCCCCce-ehhhhhcccchHH
Q 008470 255 AQFFLKNVHPEMRNAANDLFGHPESLHA--QPNVFGELMRVLISPSEDVEEAVKWVLGNGVDPDIS-LHMRMLTNRSVRA 331 (564)
Q Consensus 255 ~QffLKNvhp~Mr~AA~~LfG~p~~l~s--RpN~FGELmr~~ISPs~dV~~AV~W~l~gg~~PDIs-lHmRMl~nRs~rA 331 (564)
..++++.-.+++|.+|...+|+-..... -|...-.|...+-.++..|..++-++|+.-.+|+.. .=+++|.+..-.-
T Consensus 96 ~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~V 175 (280)
T PRK09687 96 NNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDV 175 (280)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHH
Confidence 3455677778888888777787543332 345566666667777888888888888665555532 2234455554544
Q ss_pred HHHHHHHHHHHHHhcccCCCCeEEEEeCChhhhhhhccchhhhhhhheec
Q 008470 332 VQAAVKCIRKVVNSLNLTSRPKTVIVSDTPSFAKTITPNISEFAEVLYFD 381 (564)
Q Consensus 332 ~~AA~~Ci~k~~~~~hl~~rPrVvvVSDTPs~vk~i~~~i~efaeVl~FD 381 (564)
+.+|...+.+ .+ .++|..+..+.+.+++--+.++-.
T Consensus 176 R~~A~~aLg~-------~~-------~~~~~~~~~L~~~L~D~~~~VR~~ 211 (280)
T PRK09687 176 RNWAAFALNS-------NK-------YDNPDIREAFVAMLQDKNEEIRIE 211 (280)
T ss_pred HHHHHHHHhc-------CC-------CCCHHHHHHHHHHhcCCChHHHHH
Confidence 5555544442 11 267777777777766555544433
No 111
>PRK08589 short chain dehydrogenase; Validated
Probab=20.13 E-value=64 Score=30.40 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=18.8
Q ss_pred ccceeeecccccccccHHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiAA 446 (564)
-|.++||||++.+|..-|+-.+.
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~ 28 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQ 28 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHH
Confidence 47899999999999887765543
No 112
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=20.05 E-value=64 Score=29.59 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=19.8
Q ss_pred ccceeeecccccccccHHHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIAAL 447 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiAAL 447 (564)
.|.++||||++.+|...|+..+..
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~ 25 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEE 25 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC
Confidence 367999999999999888776653
No 113
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=20.02 E-value=67 Score=29.18 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=19.0
Q ss_pred cceeeecccccccccHHHHHHH
Q 008470 425 KHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 425 k~aVVSGAhrRVgTTYAQLiAA 446 (564)
|.++||||++.||..-|+..+.
T Consensus 3 k~ilItGas~giG~~la~~l~~ 24 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAA 24 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHH
Confidence 6789999999999988887764
No 114
>PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E ....
Probab=20.02 E-value=2.1e+02 Score=24.35 Aligned_cols=45 Identities=22% Similarity=0.297 Sum_probs=29.2
Q ss_pred hhHHHHHhhhhcCCCC---C---------CceehhhhhcccchHHHHHHHHHHHHHHHh
Q 008470 299 EDVEEAVKWVLGNGVD---P---------DISLHMRMLTNRSVRAVQAAVKCIRKVVNS 345 (564)
Q Consensus 299 ~dV~~AV~W~l~gg~~---P---------DIslHmRMl~nRs~rA~~AA~~Ci~k~~~~ 345 (564)
+-|++.++|++..|+= | |+..|. -++.+.-=..||.+|+++++++
T Consensus 62 ~ai~~G~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s~~~a~~~aa~~a~~~al~~ 118 (120)
T PF03764_consen 62 DAIEEGFQSALSSGPLCGYPVTDVKVTLTDGEYHE--VDSSPGAFRAAARRAFREALKK 118 (120)
T ss_dssp HHHHHHHHHHHCSSTTTSSEB-SEEEEEEEEEC-T--TTBSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhheecccccCCCceEEEEEEEEEeeecC--CcCCHHHHHHHHHHHHHHHHHh
Confidence 3478899999998853 3 344454 2333444456778899988865
No 115
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=20.02 E-value=64 Score=29.88 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=19.2
Q ss_pred ccceeeecccccccccHHHHHHH
Q 008470 424 AKHAVVSGAFRRVGTTYAQLIAA 446 (564)
Q Consensus 424 Ak~aVVSGAhrRVgTTYAQLiAA 446 (564)
-|.++||||++.+|-.-|+..++
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~ 28 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLA 28 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH
Confidence 47899999999999887776654
Done!