BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008471
         (564 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q2YA24|NUOD_NITMU NADH-quinone oxidoreductase subunit D OS=Nitrosospira multiformis
           (strain ATCC 25196 / NCIMB 11849) GN=nuoD PE=3 SV=1
          Length = 417

 Score = 35.4 bits (80), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 64/167 (38%), Gaps = 14/167 (8%)

Query: 404 HLLWKSRRLLDI----VSAIASRLNWDY-DAVHVERGEKARNKDLWPNLDADTSPDALIS 458
           HLLW     LD+    V   A R   D  DA     G +       P       PD++  
Sbjct: 110 HLLWLGAHALDVGAMTVFLYAFRDREDLMDAYESVSGARMHAAYYRPGGVYRDLPDSMPQ 169

Query: 459 TLADKIENGRNVYIATNEPDTSFFNPLKD---KYSTHFLDEYKDLWDENSEWYSE----- 510
             A KI + +           S  + ++D   ++ T ++DEY+ L  +N  W        
Sbjct: 170 YKASKIHDEKTTKARNENRQGSLLDFIEDFTNRFPT-YVDEYETLLTDNRIWKQRLVGIG 228

Query: 511 TMKLNKGAAVEFDGYMRASVDTEVFLRGKKQIETFNDLTNDCKDGIN 557
           T+   +  A+ F G M      E  LR K+  E ++ L  D   G+N
Sbjct: 229 TVSPERAMALGFTGPMLRGSGVEWDLRKKQPYEVYDQLDFDIPVGVN 275


>sp|Q54QZ5|TREA_DICDI Trehalase OS=Dictyostelium discoideum GN=treh PE=3 SV=1
          Length = 594

 Score = 32.3 bits (72), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 20/127 (15%)

Query: 279 FLCALGEAQYLNRTLVMDLTICLNSMYTSSNQDEEGKDFRFYFDFEHLKEAASVLDKE-Q 337
           F+   G   YLNR+     T  +N  + ++N            D E L+E   +LD+E Q
Sbjct: 231 FIPNGGRIYYLNRSQPPLFTQMVNKYFEATNGS----------DIEFLQEILPILDQEYQ 280

Query: 338 FWSDWNKWQKKDG-------LNLYLVEDFRVTPMKLSEVKDSLIMRKFGSVEPDNYWYRV 390
           +W      +  +G       LNLY V +   +P   S  +D    + F SVE  +Y+Y  
Sbjct: 281 WWMTHRTTELTNGETGESVILNLYNVSN--NSPRPESYYEDFTDAQSFSSVEEKDYFYSS 338

Query: 391 CEGETES 397
                ES
Sbjct: 339 IASGAES 345


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.134    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 211,465,995
Number of Sequences: 539616
Number of extensions: 9113146
Number of successful extensions: 21132
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 21127
Number of HSP's gapped (non-prelim): 10
length of query: 564
length of database: 191,569,459
effective HSP length: 123
effective length of query: 441
effective length of database: 125,196,691
effective search space: 55211740731
effective search space used: 55211740731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)