Query 008471
Match_columns 564
No_of_seqs 65 out of 67
Neff 2.8
Searched_HMMs 46136
Date Thu Mar 28 12:35:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10250 O-FucT: GDP-fucose pr 99.6 2.2E-16 4.7E-21 153.9 4.3 244 270-547 8-329 (351)
2 PF01531 Glyco_transf_11: Glyc 84.5 1.5 3.2E-05 44.2 4.9 31 267-297 36-66 (298)
3 PF05830 NodZ: Nodulation prot 55.4 6.9 0.00015 41.6 1.8 240 267-542 8-279 (321)
4 PF14399 Transpep_BrtH: NlpC/p 38.6 54 0.0012 32.4 4.9 54 414-485 53-106 (317)
5 PF06900 DUF1270: Protein of u 32.4 17 0.00036 30.0 0.3 20 31-50 5-24 (53)
6 KOG3705 Glycoprotein 6-alpha-L 32.2 74 0.0016 35.7 5.1 142 375-534 322-469 (580)
7 PF01320 Colicin_Pyocin: Colic 31.7 35 0.00075 30.2 2.1 31 431-465 46-76 (85)
8 PRK15367 type III secretion sy 31.3 61 0.0013 35.6 4.3 53 31-84 115-171 (395)
9 KOG3849 GDP-fucose protein O-f 26.3 32 0.0007 36.8 1.2 63 269-338 35-103 (386)
10 PF05830 NodZ: Nodulation prot 26.0 90 0.002 33.6 4.3 16 451-466 221-236 (321)
11 PF05620 DUF788: Protein of un 25.5 1.1E+02 0.0023 29.2 4.4 29 62-90 62-90 (170)
12 PRK15447 putative protease; Pr 23.7 1.7E+02 0.0036 30.2 5.7 65 402-477 7-71 (301)
13 PF14642 FAM47: FAM47 family 21.9 65 0.0014 33.6 2.4 31 440-471 130-160 (258)
14 PF09580 Spore_YhcN_YlaJ: Spor 21.5 2.1E+02 0.0045 26.6 5.4 74 410-486 74-149 (177)
15 PF12841 YvrJ: YvrJ protein fa 20.5 51 0.0011 25.3 1.0 19 24-42 1-19 (38)
16 cd06592 GH31_glucosidase_KIAA1 20.4 1.7E+02 0.0038 29.8 5.0 48 408-462 28-81 (303)
17 PF10917 DUF2708: Protein of u 20.3 37 0.00081 27.0 0.2 15 31-45 4-18 (43)
No 1
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=99.62 E-value=2.2e-16 Score=153.88 Aligned_cols=244 Identities=27% Similarity=0.326 Sum_probs=123.0
Q ss_pred cCchhHHHHHHhhhhccccccceeeeecccccccccCCCCCCcccccceeecchhhhhccc-cccccchhhH-Hhhhhhh
Q 008471 270 KSMNHFLWSFLCALGEAQYLNRTLVMDLTICLNSMYTSSNQDEEGKDFRFYFDFEHLKEAA-SVLDKEQFWS-DWNKWQK 347 (564)
Q Consensus 270 kgm~H~~~SllCAL~EA~yLNRTfVMdl~mCLs~~yn~~g~~eegkd~r~yfD~ehl~~tv-~Vld~~qfw~-dw~~W~~ 347 (564)
.|.|.|.-+|+-|+-=|+.||||||||- .+.....+ +......-.|.-+||+++|++.+ +||+-.+|.. .|..=..
T Consensus 8 GGfnNQr~~~~~a~~~A~~LnRTLVLPp-~~~~~~~~-~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~ 85 (351)
T PF10250_consen 8 GGFNNQRMGFENAVVFAKALNRTLVLPP-FIKHYHWK-DQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR 85 (351)
T ss_dssp SSHHHHHHHHHHHHHHHHHHT-EEE--E-EEEESSSS-----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred CCHHHHHHHHHHHHHHHHHhCCEEEcCC-cccccccc-ccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence 3899999999999999999999999987 33332222 11112334577899999999999 9988888862 2322000
Q ss_pred h--------------------------cCCcceeeee-Eeeecce-ecc------------cccceeeeecCCCCCCCce
Q 008471 348 K--------------------------DGLNLYLVED-FRVTPMK-LSE------------VKDSLIMRKFGSVEPDNYW 387 (564)
Q Consensus 348 ~--------------------------~~l~~r~v~~-~~Vtp~~-l~~------------~k~~li~rkf~~~ep~nyW 387 (564)
. ++........ ....+.- +.+ ....+.+..+....+.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 165 (351)
T PF10250_consen 86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYL 165 (351)
T ss_dssp EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GG
T ss_pred hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhccc
Confidence 0 0111110000 0111110 111 1123333334443333322
Q ss_pred eEeeccccccccccccchhccchhHHHHHHHHHhhcC---CCCceEEeecC-cc--------------------------
Q 008471 388 YRVCEGETESVVQRPWHLLWKSRRLLDIVSAIASRLN---WDYDAVHVERG-EK-------------------------- 437 (564)
Q Consensus 388 y~vCeg~~~s~i~~P~~~L~~skrLmdiv~~I~srm~---~DfDavHVrRG-Dk-------------------------- 437 (564)
- ..+++ .|..++.|+++|+++..++. +.|-|||+|+| |+
T Consensus 166 ~--------~~~~r---~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~~~~C~~~~~~~~~~~~~~~~~~~~~~ 234 (351)
T PF10250_consen 166 D--------RDLQR---YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDWFSACEFKGERHLLASPRCWGKKSINP 234 (351)
T ss_dssp G--------GGGGG---G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHHHHHHCT-T----TTTHHHH-GGGTT-
T ss_pred C--------ccceE---EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCchHhhcccCCchHHHHHhHhhccccccc
Confidence 1 22233 78888999999999998887 99999999999 88
Q ss_pred -c-ccccCCCCCCCCCChHHHHHHhhhccC--CCceEEEecCCCC--ccCccccccceeeeeccchhhhhccCChhhHhh
Q 008471 438 -A-RNKDLWPNLDADTSPDALISTLADKIE--NGRNVYIATNEPD--TSFFNPLKDKYSTHFLDEYKDLWDENSEWYSET 511 (564)
Q Consensus 438 -~-~nk~l~P~Ld~DtspE~i~~~i~~~I~--~GR~LYIATnE~~--~~FFdpLk~kY~vhfLdDFk~Lw~~~sewy~Et 511 (564)
. ......| +.+.++..|++.+. ..++||||||+.. ...+++|++.|.-.+ .++.+.. ..|.
T Consensus 235 ~~~~~~~~~p------~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~---~~~~~~~----~~~~ 301 (351)
T PF10250_consen 235 EKKRRNGCCP------STPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVV---TKDDLLS----HEEL 301 (351)
T ss_dssp ----HHHHS--------HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHH---GGGT--E----E--S
T ss_pred hhhhhcCCCC------ChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhE---eccccCC----HHHh
Confidence 1 0111223 33555666666554 4599999999943 357788888887544 1111110 1122
Q ss_pred hhccCCcccccCCchhhhhhHhhhhcCceeEeeccc
Q 008471 512 MKLNKGAAVEFDGYMRASVDTEVFLRGKKQIETFND 547 (564)
Q Consensus 512 ~~Ln~G~PV~fdgYmr~mVDteVf~rGK~~VeTF~~ 547 (564)
..+++.+..|||++|.+++..||+|..+
T Consensus 302 --------~~~~~~~~a~vD~~i~~~s~~Figt~~S 329 (351)
T PF10250_consen 302 --------EPLNDDQLAMVDQEICSRSDVFIGTCGS 329 (351)
T ss_dssp -------------S--HHHHHHHHHHSSEEEE-TT-
T ss_pred --------hhccccchhHHHHHHHhcCCEEEecCcc
Confidence 2344477899999999999999999876
No 2
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=84.46 E-value=1.5 Score=44.17 Aligned_cols=31 Identities=13% Similarity=0.259 Sum_probs=25.5
Q ss_pred CCCcCchhHHHHHHhhhhccccccceeeeec
Q 008471 267 DRCKSMNHFLWSFLCALGEAQYLNRTLVMDL 297 (564)
Q Consensus 267 d~Ckgm~H~~~SllCAL~EA~yLNRTfVMdl 297 (564)
....++|-|++-+-..++.|+.++|+.+++.
T Consensus 36 ~~~g~LGNqmfqya~l~~lak~~~~~~~i~~ 66 (298)
T PF01531_consen 36 NLNGRLGNQMFQYASLYGLAKLNGRTAFIPI 66 (298)
T ss_pred EEcchHHHHHhHHHHHHHHHHhcCCccccch
Confidence 3567899999999899999998888877653
No 3
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=55.39 E-value=6.9 Score=41.59 Aligned_cols=240 Identities=18% Similarity=0.297 Sum_probs=102.2
Q ss_pred CCCcCchhHHHHHHhhhhccccccceeeeecc-cccccccCCCCCCcccccceeecchhhhhcccccc-c--------cc
Q 008471 267 DRCKSMNHFLWSFLCALGEAQYLNRTLVMDLT-ICLNSMYTSSNQDEEGKDFRFYFDFEHLKEAASVL-D--------KE 336 (564)
Q Consensus 267 d~Ckgm~H~~~SllCAL~EA~yLNRTfVMdl~-mCLs~~yn~~g~~eegkd~r~yfD~ehl~~tv~Vl-d--------~~ 336 (564)
.+|.|||--+|||--|-.=|+-+|||||+|-+ -|.-..-. .-+|.-+|+.-.=-..|+|+ | .+
T Consensus 8 r~r~g~gd~l~~la~aw~~a~~~~r~l~idw~~s~~~~~~f-------~n~f~~ffepv~~i~~~~~~~~d~i~~~~~~g 80 (321)
T PF05830_consen 8 RRRTGLGDCLWSLAAAWRYAKRTGRTLVIDWRGSCYLDQPF-------TNAFPVFFEPVEDIAGVRVICDDRINQFSFPG 80 (321)
T ss_dssp E--S-HHHHHHHHHHHHHHHHHHT-EEEEE-BT-TT-SSTT-------SBSHHHHB---SEETTEEEE-SGGGGT----S
T ss_pred eccCCchhHHHHHHHHHHHHHHhCCeEEEEcCCceecCCcc-------cccCCcccchhhhhcCceeEecchhhhhcCCC
Confidence 47999999999999999999999999999964 34321111 12344444322211234443 2 12
Q ss_pred hhhHHhhhhhhhcCCcceeeeeEee--ec------ceeccc--ccceeeeecCCCCCCCceeEeeccccccccccccchh
Q 008471 337 QFWSDWNKWQKKDGLNLYLVEDFRV--TP------MKLSEV--KDSLIMRKFGSVEPDNYWYRVCEGETESVVQRPWHLL 406 (564)
Q Consensus 337 qfw~dw~~W~~~~~l~~r~v~~~~V--tp------~~l~~~--k~~li~rkf~~~ep~nyWy~vCeg~~~s~i~~P~~~L 406 (564)
-|-..| |.+ ..+.--.-.|..| .+ -+++++ .+|+|--+-.-. -|+-++|+-| |..|
T Consensus 81 ~~fp~~--w~~-p~~~~~~~pd~qi~re~d~l~~lf~~~~d~~a~~vv~d~c~~~--------~c~~~aeR~i---f~sl 146 (321)
T PF05830_consen 81 PFFPAW--WNK-PSIDCVYRPDEQIFRERDELRQLFQSQEDHEANTVVCDACLMW--------RCDEEAEREI---FSSL 146 (321)
T ss_dssp SEESGG--GGS--GGGGS---HHHHHHHHHHHHHHHHSSS--S-SEEEE-S--TT--------SS-HHHHHHH---HHHS
T ss_pred CcChhH--HhC-CCcceecCChHHHhhhhHHHHHHhhcccccccchhhhHhhcCC--------cchhHHHHHH---HHhC
Confidence 233333 322 2111000111100 01 112222 334443333322 3666677655 4566
Q ss_pred ccchhHHHHHHHHHhhcCCCCc--eEEeecCcccccccCCCCCCCCCChHHHHH----Hhh--hccCCC--ceEEEecCC
Q 008471 407 WKSRRLLDIVSAIASRLNWDYD--AVHVERGEKARNKDLWPNLDADTSPDALIS----TLA--DKIENG--RNVYIATNE 476 (564)
Q Consensus 407 ~~skrLmdiv~~I~srm~~DfD--avHVrRGDk~~nk~l~P~Ld~DtspE~i~~----~i~--~~I~~G--R~LYIATnE 476 (564)
-..+....-+++|..+.-.++. +||||+|.-. ..+-|-..-+.++--++ .++ +...++ -.||+|||+
T Consensus 147 kpR~eIqarID~iy~ehf~g~~~IGVHVRhGnge---D~~~h~~~~~D~e~~L~~V~~ai~~ak~~~~~k~~~IFLATDS 223 (321)
T PF05830_consen 147 KPRPEIQARIDAIYREHFAGYSVIGVHVRHGNGE---DIMDHAPYWADEERALRQVCTAIDKAKALAPPKPVRIFLATDS 223 (321)
T ss_dssp -B-HHHHHHHHHHHHHHTTTSEEEEEEE------------------HHHHHHHHHHHHHHHHHHTS--SS-EEEEEEES-
T ss_pred CCCHHHHHHHHHHHHHHcCCCceEEEEEeccCCc---chhccCccccCchHHHHHHHHHHHHHHhccCCCCeeEEEecCc
Confidence 6777888889998776655664 6899999542 11111111134442332 221 223444 459999998
Q ss_pred CCccCcccccccee--eeeccchhhhhccCChhhHhhhhccCCcccccCCchhhhhhHhhhhcCceeE
Q 008471 477 PDTSFFNPLKDKYS--THFLDEYKDLWDENSEWYSETMKLNKGAAVEFDGYMRASVDTEVFLRGKKQI 542 (564)
Q Consensus 477 ~~~~FFdpLk~kY~--vhfLdDFk~Lw~~~sewy~Et~~Ln~G~PV~fdgYmr~mVDteVf~rGK~~V 542 (564)
.. .-+.||++|- ++--++|..- ....+.+--..+++ =...+||-..++|-.+-|
T Consensus 224 ae--Vid~fr~~FPdiiti~k~F~~~--~~g~Lhs~~~g~~g--------g~~ALIDM~LLSrCD~LI 279 (321)
T PF05830_consen 224 AE--VIDQFRKKFPDIITIPKQFPAS--QAGPLHSAAVGIEG--------GESALIDMYLLSRCDYLI 279 (321)
T ss_dssp HH--HHHHHHHHSTTEE------------------HHHHHHH--------HHHHHHHHHHHTTSSEEE
T ss_pred HH--HHHHHHHHCCCeEEcccccCCC--CCCcCcccccccch--------HHHHHHHHHHHHhCCeEE
Confidence 75 3566666665 2223344311 11122221112333 234788888888887777
No 4
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=38.60 E-value=54 Score=32.38 Aligned_cols=54 Identities=20% Similarity=0.304 Sum_probs=44.0
Q ss_pred HHHHHHHhhcCCCCceEEeecCcccccccCCCCCCCCCChHHHHHHhhhccCCCceEEEecCCCCccCcccc
Q 008471 414 DIVSAIASRLNWDYDAVHVERGEKARNKDLWPNLDADTSPDALISTLADKIENGRNVYIATNEPDTSFFNPL 485 (564)
Q Consensus 414 div~~I~srm~~DfDavHVrRGDk~~nk~l~P~Ld~DtspE~i~~~i~~~I~~GR~LYIATnE~~~~FFdpL 485 (564)
++.+.+..++|+.+.-.+- .+++++++.|++.|..|+-|.|.+|.-.-.|+...
T Consensus 53 ~~~~~~~~~lG~~~~~~~~------------------~~~~~~~~~l~~~l~~g~pv~~~~D~~~lpy~~~~ 106 (317)
T PF14399_consen 53 DFEENLLERLGIKYEWREF------------------SSPDEAWEELKEALDAGRPVIVWVDMYYLPYRPNY 106 (317)
T ss_pred HHHHHHHHHCCceEEEEec------------------CCHHHHHHHHHHHHhCCCceEEEeccccCCCCccc
Confidence 8888999999966542211 37999999999999999999999998877777663
No 5
>PF06900 DUF1270: Protein of unknown function (DUF1270); InterPro: IPR009682 This entry is represented by Bacteriophage 92, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Staphylococcus aureus and phage proteins of 53 residues in length. The function of this family is unknown.
Probab=32.37 E-value=17 Score=29.98 Aligned_cols=20 Identities=20% Similarity=0.610 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhhhheeccC
Q 008471 31 FTMFVLGVLIFTIIAATYEP 50 (564)
Q Consensus 31 f~~fV~~vl~fTv~A~ty~P 50 (564)
+--|++|+|.||++|+.-+|
T Consensus 5 ykSylIA~l~ftvlsi~L~~ 24 (53)
T PF06900_consen 5 YKSYLIANLCFTVLSIALMP 24 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34477888888888876653
No 6
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=32.20 E-value=74 Score=35.74 Aligned_cols=142 Identities=20% Similarity=0.280 Sum_probs=76.8
Q ss_pred eeecCCCCCCCceeEeeccccccccccccchhccchhHHHHHHHHHhhcCCCC--ceEEeecCcccccccCCCCCC-CCC
Q 008471 375 MRKFGSVEPDNYWYRVCEGETESVVQRPWHLLWKSRRLLDIVSAIASRLNWDY--DAVHVERGEKARNKDLWPNLD-ADT 451 (564)
Q Consensus 375 ~rkf~~~ep~nyWy~vCeg~~~s~i~~P~~~L~~skrLmdiv~~I~srm~~Df--DavHVrRGDk~~nk~l~P~Ld-~Dt 451 (564)
.|--|+|. .|+. |.--+++|||...+. +-.++--..+|||= =.|||||-||.-.---+-.|. --+
T Consensus 322 ~rlHgdP~---vwwV---gqFikYL~Rpqp~t~------~~l~~a~k~lg~~~PivGvhvRRTDKVGTEAAfH~~eEYM~ 389 (580)
T KOG3705|consen 322 TRLHGDPP---VWWV---GQFIKYLMRPQPATQ------EKLDKALKSLGLDKPIVGVHVRRTDKVGTEAAFHALEEYME 389 (580)
T ss_pred HHhcCCCc---eeeH---HHHHHHHhCCChhhH------HHHHHHHHhCCCCCceeeEEEEecccccchhhhhhHHHHHH
Confidence 35557775 6763 555689999987654 22233333477664 478999999985542211000 001
Q ss_pred ChHHHHHHhhhccC-CCceEEEecCCCCccCcccccccee-eeeccchhhhhc-cCChhhHhhhhccCCcccccCCchhh
Q 008471 452 SPDALISTLADKIE-NGRNVYIATNEPDTSFFNPLKDKYS-THFLDEYKDLWD-ENSEWYSETMKLNKGAAVEFDGYMRA 528 (564)
Q Consensus 452 spE~i~~~i~~~I~-~GR~LYIATnE~~~~FFdpLk~kY~-vhfLdDFk~Lw~-~~sewy~Et~~Ln~G~PV~fdgYmr~ 528 (564)
-.|.....+++.-+ -.|-+|+|||.+. ...--|.+|- --+..|=+=-|. ..+.=|.++ .|++ |+.|=|.+-
T Consensus 390 ~vE~~f~~le~rg~~~~rRiflAsDDp~--vv~EAk~kYPnYe~igd~eia~~A~l~nRYTd~-sL~G---vIlDIh~LS 463 (580)
T KOG3705|consen 390 WVEIWFKVLEKRGKPLERRIFLASDDPT--VVPEAKNKYPNYEVIGDTEIAKTAQLNNRYTDA-SLMG---VILDIHILS 463 (580)
T ss_pred HHHHHHHHHHHhCCchhheEEEecCCch--hchHhhccCCCcEEeccHHHHHHhhccccchhh-hhhh---eeeeeeeec
Confidence 23444455544433 4688999999765 4555666665 334444333332 222334443 2333 666666666
Q ss_pred hhhHhh
Q 008471 529 SVDTEV 534 (564)
Q Consensus 529 mVDteV 534 (564)
++|-+|
T Consensus 464 ~~d~LV 469 (580)
T KOG3705|consen 464 KVDYLV 469 (580)
T ss_pred ccceEE
Confidence 655543
No 7
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=31.70 E-value=35 Score=30.19 Aligned_cols=31 Identities=13% Similarity=0.388 Sum_probs=23.8
Q ss_pred EeecCcccccccCCCCCCCCCChHHHHHHhhhccC
Q 008471 431 HVERGEKARNKDLWPNLDADTSPDALISTLADKIE 465 (564)
Q Consensus 431 HVrRGDk~~nk~l~P~Ld~DtspE~i~~~i~~~I~ 465 (564)
|-...|.+ -||.-+++-|||.|++.|++|=.
T Consensus 46 HP~gSDLI----fYP~~~~edsPegIv~~vKeWRa 76 (85)
T PF01320_consen 46 HPDGSDLI----FYPEDGREDSPEGIVKEVKEWRA 76 (85)
T ss_dssp -TTTTHHH----HS-STTSTSSHHHHHHHHHHHHH
T ss_pred CCCCCcee----eeCCCCCCCCHHHHHHHHHHHHH
Confidence 56666666 47888999999999999999843
No 8
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=31.34 E-value=61 Score=35.59 Aligned_cols=53 Identities=11% Similarity=0.191 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhhhheeccCCCCCCCcchhhhhhhcccC----CceeecCCceeeccc
Q 008471 31 FTMFVLGVLIFTIIAATYEPEDPLFHPSAKITSFLTSQS----NATFKSDDTVVKTGE 84 (564)
Q Consensus 31 f~~fV~~vl~fTv~A~ty~P~DP~l~~s~~~t~~~t~~~----naTf~~ddsv~~TGe 84 (564)
+.++++.+|+|+++..+=+| .|...+...+..+|.... +++..+|++|+.+|-
T Consensus 115 ~~~li~l~ll~~~~~ls~~~-~~~~~~~~~l~~~L~~p~l~~V~~~W~~dg~l~LsGy 171 (395)
T PRK15367 115 GVFLIFIGGMGVLLSISGQP-ETVNDLPLRVKFLLDKSNIHYVRAQWKEDGSLQLSGY 171 (395)
T ss_pred HHHHHHHHHHHHHeeccCCC-CCCCChHHHHHHHhhcccccceEEEECCCCcEEEEEE
Confidence 46677888888877777788 444556677777776633 677888999999994
No 9
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=26.31 E-value=32 Score=36.78 Aligned_cols=63 Identities=37% Similarity=0.506 Sum_probs=44.3
Q ss_pred CcCch---hHHHHHHhhhhccccccceeeeecccccccccCCCCCCcc---cccceeecchhhhhccccccccchh
Q 008471 269 CKSMN---HFLWSFLCALGEAQYLNRTLVMDLTICLNSMYTSSNQDEE---GKDFRFYFDFEHLKEAASVLDKEQF 338 (564)
Q Consensus 269 Ckgm~---H~~~SllCAL~EA~yLNRTfVMdl~mCLs~~yn~~g~~ee---gkd~r~yfD~ehl~~tv~Vld~~qf 338 (564)
|--|| .|---||=.|+=|.-||||||+|-=+ .|- .+|- --.|.+||-.|-|++---||--.+|
T Consensus 35 CPCMGRFGNQaDhFLGsLAFAKaLnRTL~lPpwi----Ey~---~pe~~n~~vpf~~yF~vepl~~YhRVitm~dF 103 (386)
T KOG3849|consen 35 CPCMGRFGNQADHFLGSLAFAKALNRTLVLPPWI----EYK---HPETKNLMVPFEFYFQVEPLAKYHRVITMQDF 103 (386)
T ss_pred ccccccccchHHHHHHHHHHHHHhcccccCCcch----hcc---CCcccccccchhheeecccHhhhhhheeHHHH
Confidence 55554 45556677778899999999998654 222 2222 1358999999999988888776666
No 10
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=26.03 E-value=90 Score=33.57 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=10.7
Q ss_pred CChHHHHHHhhhccCC
Q 008471 451 TSPDALISTLADKIEN 466 (564)
Q Consensus 451 tspE~i~~~i~~~I~~ 466 (564)
|.-.++++.+++.++.
T Consensus 221 TDSaeVid~fr~~FPd 236 (321)
T PF05830_consen 221 TDSAEVIDQFRKKFPD 236 (321)
T ss_dssp ES-HHHHHHHHHHSTT
T ss_pred cCcHHHHHHHHHHCCC
Confidence 4455778888888873
No 11
>PF05620 DUF788: Protein of unknown function (DUF788); InterPro: IPR008506 This family consists of several eukaryotic proteins of unknown function.
Probab=25.48 E-value=1.1e+02 Score=29.20 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=24.6
Q ss_pred hhhhcccCCceeecCCceeeccccccccc
Q 008471 62 TSFLTSQSNATFKSDDTVVKTGEDFMALN 90 (564)
Q Consensus 62 t~~~t~~~naTf~~ddsv~~TGeD~~~~~ 90 (564)
-.++...+..+|..++.+|..|+|++.+.
T Consensus 62 ~~~l~~~~rp~~~~~g~Lv~~G~DL~~~G 90 (170)
T PF05620_consen 62 YYFLEKMARPKYDETGELVDAGEDLNQPG 90 (170)
T ss_pred HHHHHHhCCCCcCCCCCeecCcccccCCc
Confidence 34566788999999999999999998665
No 12
>PRK15447 putative protease; Provisional
Probab=23.72 E-value=1.7e+02 Score=30.17 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=50.1
Q ss_pred ccchhccchhHHHHHHHHHhhcCCCCceEEeecCcccccccCCCCCCCCCChHHHHHHhhhccCCCceEEEecCCC
Q 008471 402 PWHLLWKSRRLLDIVSAIASRLNWDYDAVHVERGEKARNKDLWPNLDADTSPDALISTLADKIENGRNVYIATNEP 477 (564)
Q Consensus 402 P~~~L~~skrLmdiv~~I~srm~~DfDavHVrRGDk~~nk~l~P~Ld~DtspE~i~~~i~~~I~~GR~LYIATnE~ 477 (564)
|--|-|++.++.+.--+|+.. +.|+|.+. + ...+.+. ..+.|+|.+.++..=..|..||+||+-.
T Consensus 7 ~~~~~~p~~~~~~~~~~~~~~---gaDaVY~g-~-~~~~~R~------~f~~~~l~e~v~~~~~~gkkvyva~p~i 71 (301)
T PRK15447 7 PVLYYWPKETVRDFYQRAADS---PVDIVYLG-E-TVCSKRR------ELKVGDWLELAERLAAAGKEVVLSTLAL 71 (301)
T ss_pred ccccCCCCCCHHHHHHHHHcC---CCCEEEEC-C-ccCCCcc------CCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 556779999999998888652 49999998 2 2223322 3578999988888778999999999885
No 13
>PF14642 FAM47: FAM47 family
Probab=21.85 E-value=65 Score=33.65 Aligned_cols=31 Identities=26% Similarity=0.559 Sum_probs=24.3
Q ss_pred cccCCCCCCCCCChHHHHHHhhhccCCCceEE
Q 008471 440 NKDLWPNLDADTSPDALISTLADKIENGRNVY 471 (564)
Q Consensus 440 nk~l~P~Ld~DtspE~i~~~i~~~I~~GR~LY 471 (564)
.--+||||..|+.|| |+..+-+.|.+.|.|=
T Consensus 130 PLAlyP~LeE~mPpd-Lll~VLevLDPerkLe 160 (258)
T PF14642_consen 130 PLALYPHLEEDMPPD-LLLKVLEVLDPERKLE 160 (258)
T ss_pred ccccCCCccccCCHH-HHHHHHhccCcccchh
Confidence 347999999999997 6666677778888763
No 14
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=21.50 E-value=2.1e+02 Score=26.60 Aligned_cols=74 Identities=15% Similarity=0.167 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHhhcCCCCceEEeecCcccccccCCC--CCCCCCChHHHHHHhhhccCCCceEEEecCCCCccCccccc
Q 008471 410 RRLLDIVSAIASRLNWDYDAVHVERGEKARNKDLWP--NLDADTSPDALISTLADKIENGRNVYIATNEPDTSFFNPLK 486 (564)
Q Consensus 410 krLmdiv~~I~srm~~DfDavHVrRGDk~~nk~l~P--~Ld~DtspE~i~~~i~~~I~~GR~LYIATnE~~~~FFdpLk 486 (564)
..+.+-+..+..++.+==||.=|+-|+-++--..-. ....+.-...|.+++++..+..++|||.||. .+|..|+
T Consensus 74 ~~~a~~i~~~v~~~~~V~~A~vvv~~~~a~Vav~~~~~~~~~~~i~~~V~~~v~~~~p~~~~V~Vs~D~---~~~~ri~ 149 (177)
T PF09580_consen 74 QQLADRIANRVKKVPGVEDATVVVTDDNAYVAVDLDFNRFNTKKIKKKVEKAVKSADPRIYNVYVSTDP---DIFDRIR 149 (177)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEECCEEEEEEEecccccchhHHHHHHHHHHHHhCCCccEEEEEcCH---HHHHHHH
Confidence 344444555555677666777777777776653322 1111122234455555555666999999974 4565554
No 15
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=20.51 E-value=51 Score=25.33 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=15.9
Q ss_pred HHHhhhHHHHHHHHHHHhh
Q 008471 24 AMIGNLCFTMFVLGVLIFT 42 (564)
Q Consensus 24 ~~i~n~cf~~fV~~vl~fT 42 (564)
++|||+.|..+|..-|++=
T Consensus 1 ~~I~n~GFPi~va~yLL~R 19 (38)
T PF12841_consen 1 QLISNVGFPIAVAIYLLVR 19 (38)
T ss_pred CchhhcCcHHHHHHHHHHH
Confidence 3689999999999888753
No 16
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.43 E-value=1.7e+02 Score=29.81 Aligned_cols=48 Identities=17% Similarity=0.427 Sum_probs=39.3
Q ss_pred cchhHHHHHHHHHhhcCCCCceEEee------cCcccccccCCCCCCCCCChHHHHHHhhh
Q 008471 408 KSRRLLDIVSAIASRLNWDYDAVHVE------RGEKARNKDLWPNLDADTSPDALISTLAD 462 (564)
Q Consensus 408 ~skrLmdiv~~I~srm~~DfDavHVr------RGDk~~nk~l~P~Ld~DtspE~i~~~i~~ 462 (564)
....|+++|++++++ +--+|.+|+- .||+.-+++.||+ |.++++.|++
T Consensus 28 s~~~v~~~~~~~~~~-~iP~d~i~iD~~w~~~~g~f~~d~~~FPd------p~~mi~~l~~ 81 (303)
T cd06592 28 NQETVLNYAQEIIDN-GFPNGQIEIDDNWETCYGDFDFDPTKFPD------PKGMIDQLHD 81 (303)
T ss_pred CHHHHHHHHHHHHHc-CCCCCeEEeCCCccccCCccccChhhCCC------HHHHHHHHHH
Confidence 456789999999884 6578999985 6889988899994 7889888887
No 17
>PF10917 DUF2708: Protein of unknown function (DUF2708); InterPro: IPR024415 This entry represents fungus-induced proteins which may have role in hypoxia response[].
Probab=20.27 E-value=37 Score=27.03 Aligned_cols=15 Identities=20% Similarity=0.718 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhhhh
Q 008471 31 FTMFVLGVLIFTIIA 45 (564)
Q Consensus 31 f~~fV~~vl~fTv~A 45 (564)
+++|||++|+++-..
T Consensus 4 YsvfvFaiLaissvs 18 (43)
T PF10917_consen 4 YSVFVFAILAISSVS 18 (43)
T ss_pred eeehHHHHhhhhccc
Confidence 688999998877544
Done!