Query 008471
Match_columns 564
No_of_seqs 65 out of 67
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 04:21:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008471.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008471hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.6 3.2E-16 1.1E-20 157.0 10.0 276 255-562 20-401 (408)
2 3zy2_A Putative GDP-fucose pro 98.5 3.3E-07 1.1E-11 94.1 10.3 243 269-547 14-334 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 97.8 6.9E-05 2.3E-09 79.5 10.9 242 252-547 140-407 (526)
4 2hhc_A NODZ, nodulation fucosy 97.4 4.7E-05 1.6E-09 73.7 2.5 41 255-299 2-42 (330)
5 3u43_A Colicin-E2 immunity pro 29.3 28 0.00094 30.1 2.4 31 431-465 46-76 (94)
6 1fr2_A Colicin E9 immunity pro 27.2 33 0.0011 29.0 2.5 31 431-465 46-76 (86)
7 1gxg_A Colicin E8 immunity pro 27.1 33 0.0011 29.0 2.4 30 431-464 45-74 (85)
8 3gdw_A Sigma-54 interaction do 25.4 98 0.0033 27.3 5.3 51 409-476 17-72 (139)
9 1unk_A Colicin E7; immunity pr 23.4 44 0.0015 28.6 2.5 30 431-464 47-76 (87)
10 3gx1_A LIN1832 protein; APC633 21.4 1.3E+02 0.0045 26.1 5.3 51 409-476 17-70 (130)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.64 E-value=3.2e-16 Score=157.01 Aligned_cols=276 Identities=19% Similarity=0.196 Sum_probs=162.9
Q ss_pred cccceEEEeCCCCCCcCchhHHHHHHhhhhccccccce----eeeecccccccccCCCCCCcccccceeecchhhhhccc
Q 008471 255 SRGRYLIYMGGGDRCKSMNHFLWSFLCALGEAQYLNRT----LVMDLTICLNSMYTSSNQDEEGKDFRFYFDFEHLKEAA 330 (564)
Q Consensus 255 ~~gKYLyy~~gGd~Ckgm~H~~~SllCAL~EA~yLNRT----fVMdl~mCLs~~yn~~g~~eegkd~r~yfD~ehl~~tv 330 (564)
++.|||.|----+ .|-|=|--.|+=|+.=|+.|||| ||||--.=+ ..|......+..-.|.-+||+++|++-+
T Consensus 20 ~~~rYl~y~~~~g--~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~-~h~~~~~~~~~~ipf~~fFDv~~L~~~v 96 (408)
T 4ap5_A 20 SRRRYLLYDVNPP--EGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRL-YHWQSPDIHQVRIPWSEFFDLPSLNKNI 96 (408)
T ss_dssp CCCEEEEECCCTT--CCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCS-CGGGSTTSCCCSBCGGGTBCHHHHHTTS
T ss_pred cccceEEecCCCC--CcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCccc-ccccCCcccceeccHHHhcCHHHHHhhC
Confidence 5689999954211 45666666666677788999999 999933212 2222222222234588899999999999
Q ss_pred cccccchhhHHhhh--hhh----hc---CCcceeeeeEeeecceecccccceeeeec--CCCCCCCce--------eEee
Q 008471 331 SVLDKEQFWSDWNK--WQK----KD---GLNLYLVEDFRVTPMKLSEVKDSLIMRKF--GSVEPDNYW--------YRVC 391 (564)
Q Consensus 331 ~Vld~~qfw~dw~~--W~~----~~---~l~~r~v~~~~Vtp~~l~~~k~~li~rkf--~~~ep~nyW--------y~vC 391 (564)
|||+-.+|-++... |.. +. +....... ...+.+...+.....+- +.+. +-+| -..|
T Consensus 97 pVI~meeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~----~k~~~~~c~~~~~~~~~~~~~~~-gpfw~~~~v~~~~~~c 171 (408)
T 4ap5_A 97 PVIEYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWE----EKVDERPCIDQLLYSQDKHEYYR-GWFWGYEETRGLNVSC 171 (408)
T ss_dssp CEEEHHHHHHHSSSSEEEEEEEEECCTTCCCTTCCC----CCEEEECCSSCCSCEECTTSCEE-CCGGGCTTCEEEEEEE
T ss_pred CeeEHHHHHHHhCCCCCcceeeccccHhhccccccc----chhhhhhhhhccccccccccCcc-CCcccccccccCCcee
Confidence 99999999776542 110 00 00000000 00111111111111110 0000 0011 0122
Q ss_pred cccc--ccccc-------------------ccc------------chhccchhHHHHHHHHHhh----------------
Q 008471 392 EGET--ESVVQ-------------------RPW------------HLLWKSRRLLDIVSAIASR---------------- 422 (564)
Q Consensus 392 eg~~--~s~i~-------------------~P~------------~~L~~skrLmdiv~~I~sr---------------- 422 (564)
-.-- .+.+. .|. ..|..++.|+++++....+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~r~l~~s~~l~~~a~~fi~~~L~~~~~~~h~r~~~d 251 (408)
T 4ap5_A 172 LSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSMVFARHLREVGDEFRSRHLNSTDDADRIPFQED 251 (408)
T ss_dssp EEECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHHHTCCBCHHHHHHHHHHHHHHHCCCTTTTTCCCCSS
T ss_pred EEEeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHHHHhhhhHHHHHHHHHHHHHHhCcccceeecccchh
Confidence 1100 00000 011 1233688899998875542
Q ss_pred -----------cCCCCceEEeecCccccccc-CCCCCCCCCChHHHHHHhhhccC--CCceEEEecCCCCccCccccccc
Q 008471 423 -----------LNWDYDAVHVERGEKARNKD-LWPNLDADTSPDALISTLADKIE--NGRNVYIATNEPDTSFFNPLKDK 488 (564)
Q Consensus 423 -----------m~~DfDavHVrRGDk~~nk~-l~P~Ld~DtspE~i~~~i~~~I~--~GR~LYIATnE~~~~FFdpLk~k 488 (564)
+++.|.++|+||||+++.++ ..| +.+.+++.|++.+. ..+.||||||+.+..+++..+..
T Consensus 252 w~~~~~~~~~~~~~~y~~~H~Rr~d~~~~~~~~~p------s~~~~~~~i~~~~~~~~~~~VyiATD~~~~~~~~l~~~~ 325 (408)
T 4ap5_A 252 WMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDVP------SLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLL 325 (408)
T ss_dssp GGGCCCCTTCBCCEEEEEEEECCTTTTTTTCSSSC------CHHHHHHHHHHHHHHHTCSCEEEEECCCHHHHHHHHHHC
T ss_pred HhhhhcccccccCCCccccccccccchhhhhccCC------CHHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHhC
Confidence 35689999999999997653 223 55677777777665 67889999999887776655555
Q ss_pred eeeeeccchhhhhccCChhhHhhhhccCCcccccCCchhhhhhHhhhhcCceeEeeccc--------------ccc----
Q 008471 489 YSTHFLDEYKDLWDENSEWYSETMKLNKGAAVEFDGYMRASVDTEVFLRGKKQIETFND--------------LTN---- 550 (564)
Q Consensus 489 Y~vhfLdDFk~Lw~~~sewy~Et~~Ln~G~PV~fdgYmr~mVDteVf~rGK~~VeTF~~--------------lt~---- 550 (564)
..+.+++++.+.... ..|||+ .|||++|..||+.||+|..+ ++.
T Consensus 326 ~~~~~~~~~~~~~~~-----------------~~d~~~-a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~~~~t~ 387 (408)
T 4ap5_A 326 PEMVRFEPTWEELEL-----------------YKDGGV-AIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKTTY 387 (408)
T ss_dssp TTEECCCCCHHHHHH-----------------HHHHHH-HHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBCGGGTS
T ss_pred CCcEEecCcchhhhc-----------------cCcchh-hHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCCCCccc
Confidence 666666666554442 234554 89999999999999999887 443
Q ss_pred --cccccccccccC
Q 008471 551 --DCKDGINTCNAA 562 (564)
Q Consensus 551 --DCKdGintC~~~ 562 (564)
=|+|+-..|.-.
T Consensus 388 ~~~c~~~~~~~~~~ 401 (408)
T 4ap5_A 388 NRFCGDQEKACEQP 401 (408)
T ss_dssp CBCCCTTCSSCCCC
T ss_pred cccCCCCccCCCCC
Confidence 399999999754
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=98.51 E-value=3.3e-07 Score=94.12 Aligned_cols=243 Identities=16% Similarity=0.175 Sum_probs=137.8
Q ss_pred CcCc---hhHHHHHHhhhhccccccceeeeecccccccccCCCCCCcccccceeecchhhhhccccccccchhhHHhhhh
Q 008471 269 CKSM---NHFLWSFLCALGEAQYLNRTLVMDLTICLNSMYTSSNQDEEGKDFRFYFDFEHLKEAASVLDKEQFWSDWNKW 345 (564)
Q Consensus 269 Ckgm---~H~~~SllCAL~EA~yLNRTfVMdl~mCLs~~yn~~g~~eegkd~r~yfD~ehl~~tv~Vld~~qfw~dw~~W 345 (564)
|--| |-|.--||=+|+=|+-||||||+|-=+ .|.. ++ .----|.-||++|.|++---||.-.+|=+...-
T Consensus 14 CPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi----~y~~-~~-~~~vpf~~yF~v~~l~~yhrvi~me~Fm~~lap- 86 (362)
T 3zy2_A 14 CPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFI----EFKH-PE-TKMIPFEFLFQVGTVAKYTRVVTMQEFTKKIMP- 86 (362)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEE----ECSS-SS-CEEECHHHHBCHHHHTTTSCEECHHHHHHHTHH-
T ss_pred CCCcCccccHHHHHHHHHHHHHhhCceEecCccc----cccC-Cc-ccccchhheeecchhhhhceeeeHHHHHHHhcc-
Confidence 5555 457778888899999999999998754 3432 22 111237889999999998888888888554431
Q ss_pred hhhcCCcceeeeeEeeeccee-----c-----ccccc--eeeee----------cCCCCCCCce------eEeecccc--
Q 008471 346 QKKDGLNLYLVEDFRVTPMKL-----S-----EVKDS--LIMRK----------FGSVEPDNYW------YRVCEGET-- 395 (564)
Q Consensus 346 ~~~~~l~~r~v~~~~Vtp~~l-----~-----~~k~~--li~rk----------f~~~ep~nyW------y~vCeg~~-- 395 (564)
.-=.++.|+.-=+... .++ + |..+. -.|.. |+.--.+..+ -..++-=.
T Consensus 87 -~~WP~~~R~~~C~~~~-~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W~~~~p~~ 164 (362)
T 3zy2_A 87 -TVWPPEKRKAFCWTPR-QAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKWLEKFPSE 164 (362)
T ss_dssp -HHSCGGGCEEEESSCB-C-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CHHHHSCTT
T ss_pred -ccCCcccceEeecccc-ccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHHHHHhCCcc
Confidence 0002222321111100 110 0 00000 01111 1110000010 00111000
Q ss_pred c-ccccc-----------c----cchhccchhHHHHHHH-HHhhcCCCCceEEeecC-ccccccc-----CCCCCCCC--
Q 008471 396 E-SVVQR-----------P----WHLLWKSRRLLDIVSA-IASRLNWDYDAVHVERG-EKARNKD-----LWPNLDAD-- 450 (564)
Q Consensus 396 ~-s~i~~-----------P----~~~L~~skrLmdiv~~-I~srm~~DfDavHVrRG-Dk~~nk~-----l~P~Ld~D-- 450 (564)
+ .|+.. - ...|-+|+.+++.+++ |++.|+..|=+||.||| |+..--+ .-|||=.-
T Consensus 165 ~~pVlAf~gaPa~FPv~~e~r~LqkYm~WS~~i~~~a~~fI~~~L~rpyVgIHLR~G~DW~~aC~hlk~~~~~~lfaSPQ 244 (362)
T 3zy2_A 165 EYPVLAFSSAPAPFPSKGKVWSIQKYLRWSSRITEQAKKFISANLAKPFVAVHLRNDADWVRVCEHIDTTTNRPLFASEQ 244 (362)
T ss_dssp TCSEEEESSCSSCSSCCGGGGGGGGGCCBCHHHHHHHHHHHHHHCCSSEEEEEECCCHHHHHHHHTCCTTTCCCCTTTHH
T ss_pred cCceEeecCCCCCCCcChhhHhHHHhccccHHHHHHHHHHHHHhcCCCeEEEEEecCCcHHHHHhhhccccCcccccCCc
Confidence 0 12111 1 2345589999999999 67779999999999999 7752211 02444211
Q ss_pred -----------------CChHHHHHHhhhccC--CCceEEEecCCCCccCccccccceeeeeccchhhhhccCChhhHhh
Q 008471 451 -----------------TSPDALISTLADKIE--NGRNVYIATNEPDTSFFNPLKDKYSTHFLDEYKDLWDENSEWYSET 511 (564)
Q Consensus 451 -----------------tspE~i~~~i~~~I~--~GR~LYIATnE~~~~FFdpLk~kY~vhfLdDFk~Lw~~~sewy~Et 511 (564)
-|.++|++.|++++. .=+.||||||... +.+-|++.+ ...
T Consensus 245 C~Gy~~~~~~lt~emClPSle~I~rqIk~~vk~~~lksVFIATDa~~--~~~ELk~~L------------~~~------- 303 (362)
T 3zy2_A 245 CLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSIGAKSVFVASDKDH--MIDEINEAL------------KPY------- 303 (362)
T ss_dssp HHCGGGTTCCCCHHHHSCCHHHHHHHHHHHHHHHTCSEEEEEESSCC--CHHHHHHHH------------GGG-------
T ss_pred ccCCcccCcccchhccCCCHHHHHHHHHHHHHhcCCcEEEEecCCHH--HHHHHHHHh------------hcc-------
Confidence 166889999998887 6799999999754 566665422 100
Q ss_pred hhccCCcc-cccCCchhhhhhHhhhhcCceeEeeccc
Q 008471 512 MKLNKGAA-VEFDGYMRASVDTEVFLRGKKQIETFND 547 (564)
Q Consensus 512 ~~Ln~G~P-V~fdgYmr~mVDteVf~rGK~~VeTF~~ 547 (564)
+.+ |-++.. ..+||+.|..++..||+|-.+
T Consensus 304 -----~v~vv~~~pe-~a~ID~~I~~~A~~FIGN~~S 334 (362)
T 3zy2_A 304 -----EIEAHRQEPD-DMYTSLAIMGRADLFVGNCVS 334 (362)
T ss_dssp -----TCCEECCSSC-CHHHHHHHHHHSSEEEECTTC
T ss_pred -----CceEEEeCCc-hhHHHHHHHHhCCEeecCccc
Confidence 000 111112 379999999999999998544
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=97.83 E-value=6.9e-05 Score=79.50 Aligned_cols=242 Identities=17% Similarity=0.230 Sum_probs=123.7
Q ss_pred ccccccceEEEeCCCCCCcCchhHHHHHHhhhhccccccceeeeecccccccccCCCCCCcccccceeecchhhhhcc-c
Q 008471 252 NSFSRGRYLIYMGGGDRCKSMNHFLWSFLCALGEAQYLNRTLVMDLTICLNSMYTSSNQDEEGKDFRFYFDFEHLKEA-A 330 (564)
Q Consensus 252 ~~f~~gKYLyy~~gGd~Ckgm~H~~~SllCAL~EA~yLNRTfVMdl~mCLs~~yn~~g~~eegkd~r~yfD~ehl~~t-v 330 (564)
...+..|||.+.-+ ..-|||=++..++.+|-=|..+|||||+|.+-|. |..++ +.-||.- +++. .
T Consensus 140 ~~Cs~aK~Lv~~~~--~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~w~---Y~~g~-------w~~yF~P--~s~~C~ 205 (526)
T 2de0_X 140 KDCSKAKKLVCNIN--KGCGYGCQLHHVVYCFMIAYGTQRTLILESQNWR---YATGG-------WETVFRP--VSETCT 205 (526)
T ss_dssp SCGGGSCEEEEECC--CSSCHHHHHHHHHHHHHHHHHHTCEEEEECTTCS---SCTTC-------GGGTBCC--SCSSCC
T ss_pred CcCCCCCEEEEEec--CCCchHHHHHHHHHHHHHHHhhCCEEEEECCCCC---cCCCC-------HHHhhhC--cCcccc
Confidence 35667799998653 3347888899999999999999999999998875 43221 3555554 3322 1
Q ss_pred cc-cccchhhHHhhhhhhhc-CCcceeeeeEeeecceecccccce--eeeec---------CCCCCCCceeEeecccccc
Q 008471 331 SV-LDKEQFWSDWNKWQKKD-GLNLYLVEDFRVTPMKLSEVKDSL--IMRKF---------GSVEPDNYWYRVCEGETES 397 (564)
Q Consensus 331 ~V-ld~~qfw~dw~~W~~~~-~l~~r~v~~~~Vtp~~l~~~k~~l--i~rkf---------~~~ep~nyWy~vCeg~~~s 397 (564)
+- -.+...|. ... .-...+|..--+. .+...+.-+ -+.+. +++ ..|++-. .-+
T Consensus 206 ~~~~~~~~~w~------~~~~~~~~~vV~~~~i~--~~~~~~~~~~~~~P~~~~~~L~~l~~dp---~~w~~~q---~~~ 271 (526)
T 2de0_X 206 DRSGISTGHWS------GEVKDKNVQVVELPIVD--SLHPRPPYLPLAVPEDLADRLVRVHGDP---AVWWVSQ---FVK 271 (526)
T ss_dssp CCCCSCCCBCC------CTTGGGGCSEEEECCGG--GCSSCCSCCTTCEEGGGHHHHHHHCSCH---HHHHHHH---HHH
T ss_pred CCCccccCCCC------CcccCCCcceEEeeccc--cccccccccccccchhHHHHHHhccCCc---HHHHHHH---HHH
Confidence 11 11222222 110 0011111110000 000000000 00000 111 1333321 112
Q ss_pred ccccccchhccchhHHHHHHHHHhhc--CCCCceEEeecCcccc-cccCCCCCCCCCChHHHHHHhhhc--------cCC
Q 008471 398 VVQRPWHLLWKSRRLLDIVSAIASRL--NWDYDAVHVERGEKAR-NKDLWPNLDADTSPDALISTLADK--------IEN 466 (564)
Q Consensus 398 ~i~~P~~~L~~skrLmdiv~~I~srm--~~DfDavHVrRGDk~~-nk~l~P~Ld~DtspE~i~~~i~~~--------I~~ 466 (564)
.+ +.+.+.+.+.+++..+++ +.-.=+|||||||+.. ....+| .++.++.++++ -+.
T Consensus 272 yl------~rP~~~i~~~I~~~~~~l~~~~piVGVHIRrGDk~~~E~~~~~-------~~~Y~~~v~~~~~~l~~~~~~~ 338 (526)
T 2de0_X 272 YL------IRPQPWLEKEIEEATKKLGFKHPVIGVHVRRTDKVGTEAAFHP-------IEEYMVHVEEHFQLLARRMQVD 338 (526)
T ss_dssp HH------TCBCHHHHHHHHHHHHHHTCCSSEEEEEECCC-----CCCSCS-------HHHHHHHHHHHHHHHHTTSCCS
T ss_pred HH------cCCCHHHHHHHHHHHHHhCCCCCEEEEEEeCCCCCccccccCC-------HHHHHHHHHHHHHHHHhhcCCC
Confidence 22 335566677777777764 5567799999999953 333332 34444444433 357
Q ss_pred CceEEEecCCCCccCcccccccee-eeeccchhhhhccCChhhHhhhhccCCcccccCCchhhhhhHhhhhcCceeEeec
Q 008471 467 GRNVYIATNEPDTSFFNPLKDKYS-THFLDEYKDLWDENSEWYSETMKLNKGAAVEFDGYMRASVDTEVFLRGKKQIETF 545 (564)
Q Consensus 467 GR~LYIATnE~~~~FFdpLk~kY~-vhfLdDFk~Lw~~~sewy~Et~~Ln~G~PV~fdgYmr~mVDteVf~rGK~~VeTF 545 (564)
.+.+|||||.+. .++.++++|. ..+..|-+--|.. ...++.+ .++-...++|-.++++...+|.|+
T Consensus 339 ~~~ifLATDDp~--v~~e~k~~~p~~~~~~d~~~~~~a-----~~~~R~s------~~~l~~~l~DL~lLs~cd~~Vgt~ 405 (526)
T 2de0_X 339 KKRVYLATDDPS--LLKEAKTKYPNYEFISDNSISWSA-----GLHNRYT------ENSLRGVILDIHFLSQADFLVCTF 405 (526)
T ss_dssp SCEEEEEESCHH--HHHHHHHHCTTSEEECCCCSSCSS-----GGGGGTC------CTHHHHHHHHHHHHHHSSEEEECT
T ss_pred CCeEEEEcCCHH--HHHHHHHhCCCCEEecCccccccc-----Ccccccc------HHHHHHHHHHHHHHhcCCeeecCC
Confidence 899999999654 5777776554 1111211100110 0011111 111134689999999999999998
Q ss_pred cc
Q 008471 546 ND 547 (564)
Q Consensus 546 ~~ 547 (564)
.+
T Consensus 406 sS 407 (526)
T 2de0_X 406 SS 407 (526)
T ss_dssp TS
T ss_pred CC
Confidence 75
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=97.42 E-value=4.7e-05 Score=73.73 Aligned_cols=41 Identities=32% Similarity=0.438 Sum_probs=36.5
Q ss_pred cccceEEEeCCCCCCcCchhHHHHHHhhhhccccccceeeeeccc
Q 008471 255 SRGRYLIYMGGGDRCKSMNHFLWSFLCALGEAQYLNRTLVMDLTI 299 (564)
Q Consensus 255 ~~gKYLyy~~gGd~Ckgm~H~~~SllCAL~EA~yLNRTfVMdl~m 299 (564)
++.||++|...| |||-||..+..|+.-|+-.||++++|...
T Consensus 2 ~~~r~iv~~~~g----GLGNqm~~~a~a~~~A~~t~r~l~vd~~~ 42 (330)
T 2hhc_A 2 TKERFVISRRRT----GFGDCLWSLASAWSYAQRTGRTLVIDWRG 42 (330)
T ss_dssp CCCCEEEEECCS----CHHHHHHHHHHHHHHHHHHTCEEEEECBT
T ss_pred CCCCEEEEeCCC----cHHHHHHHHHHHHHHHHHhCCEEEEECCC
Confidence 468999997544 89999999999999999999999999774
No 5
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=29.33 E-value=28 Score=30.09 Aligned_cols=31 Identities=16% Similarity=0.421 Sum_probs=23.6
Q ss_pred EeecCcccccccCCCCCCCCCChHHHHHHhhhccC
Q 008471 431 HVERGEKARNKDLWPNLDADTSPDALISTLADKIE 465 (564)
Q Consensus 431 HVrRGDk~~nk~l~P~Ld~DtspE~i~~~i~~~I~ 465 (564)
|-...|.+ -||.=++|.|||.|++.|++|=.
T Consensus 46 HP~gSDLI----fyP~~~~e~SPEgIv~~IKeWRa 76 (94)
T 3u43_A 46 HPDGSDLI----YYPRDDREDSPEGIVKEIKEWRA 76 (94)
T ss_dssp CTTTTHHH----HSCCTTSCSSHHHHHHHHHHHHH
T ss_pred CCCccCee----eeCCCCCCCCHHHHHHHHHHHHH
Confidence 33345555 47878899999999999999843
No 6
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=27.18 E-value=33 Score=29.00 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=24.2
Q ss_pred EeecCcccccccCCCCCCCCCChHHHHHHhhhccC
Q 008471 431 HVERGEKARNKDLWPNLDADTSPDALISTLADKIE 465 (564)
Q Consensus 431 HVrRGDk~~nk~l~P~Ld~DtspE~i~~~i~~~I~ 465 (564)
|-...|.++ ||+=++|.|||.|++.+++|=.
T Consensus 46 HP~gSDLIf----yP~~~~e~spE~Iv~~ik~wRa 76 (86)
T 1fr2_A 46 HPSGSDLIY----YPKEGDDDSPSGIVNTVKQWRA 76 (86)
T ss_dssp CTTTTHHHH----SCCTTCCCSHHHHHHHHHHHHH
T ss_pred CCCcCceee----cCCCCCCCCHHHHHHHHHHHHH
Confidence 444556654 8888999999999999998743
No 7
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=27.09 E-value=33 Score=28.97 Aligned_cols=30 Identities=23% Similarity=0.415 Sum_probs=23.5
Q ss_pred EeecCcccccccCCCCCCCCCChHHHHHHhhhcc
Q 008471 431 HVERGEKARNKDLWPNLDADTSPDALISTLADKI 464 (564)
Q Consensus 431 HVrRGDk~~nk~l~P~Ld~DtspE~i~~~i~~~I 464 (564)
|-...|.+ -||+=++|.|||.|++.+++|=
T Consensus 45 HP~gSDLI----fyP~~~~e~spE~Iv~~ik~wR 74 (85)
T 1gxg_A 45 HPSGSDLI----YYPEGNNDGSPEAVIKEIKEWR 74 (85)
T ss_dssp CTTTTHHH----HSCCTTCCSSHHHHHHHHHHHH
T ss_pred CCCcCcee----ecCCCCCCCCHHHHHHHHHHHH
Confidence 44445555 3888889999999999999874
No 8
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=25.37 E-value=98 Score=27.35 Aligned_cols=51 Identities=8% Similarity=0.171 Sum_probs=40.3
Q ss_pred chhHHHHHHHHHhhcCCCCceEEeecCcccccccCCCCCCCCCChHHHHHHhhhccCC-----CceEEEecCC
Q 008471 409 SRRLLDIVSAIASRLNWDYDAVHVERGEKARNKDLWPNLDADTSPDALISTLADKIEN-----GRNVYIATNE 476 (564)
Q Consensus 409 skrLmdiv~~I~srm~~DfDavHVrRGDk~~nk~l~P~Ld~DtspE~i~~~i~~~I~~-----GR~LYIATnE 476 (564)
|..|.+.|+.|.+. . .+.++-+. .+.+||++++++++.|.. |.-|.|-||=
T Consensus 17 A~~l~~~a~~i~G~-~-~~~aid~~---------------~~~~~~~~~~~i~~~i~~~~~d~g~GVLiL~Dm 72 (139)
T 3gdw_A 17 ASSMLKTAQELLGT-S-IGTAMNMP---------------LTMEVQTMYEQLRNQVITQKESLNNGILLLTDM 72 (139)
T ss_dssp HHHHHHHHHHHHTC-C-CCEEEEEC---------------TTSCHHHHHHHHHHHHHTSTGGGTTCEEEEECS
T ss_pred HHHHHHHHHHHcCc-c-cEEEEEcc---------------CCCCHHHHHHHHHHHHHhhcCCCCCCEEEEEeC
Confidence 67899999999987 3 67776443 357899999998888754 7789999987
No 9
>1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB: 1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A 1ujz_A 2erh_A
Probab=23.40 E-value=44 Score=28.58 Aligned_cols=30 Identities=17% Similarity=0.419 Sum_probs=24.0
Q ss_pred EeecCcccccccCCCCCCCCCChHHHHHHhhhcc
Q 008471 431 HVERGEKARNKDLWPNLDADTSPDALISTLADKI 464 (564)
Q Consensus 431 HVrRGDk~~nk~l~P~Ld~DtspE~i~~~i~~~I 464 (564)
|-...|.+ -||.=++|-|||.|++.|++|=
T Consensus 47 HP~gsDLI----fYP~~~~edsPEgIv~~iKeWR 76 (87)
T 1unk_A 47 HPDGTDLI----YYPSDNRDDSPEGIVKEIKEWR 76 (87)
T ss_dssp CTTTTHHH----HSCCSSCCCSHHHHHHHHHHHH
T ss_pred CCCCCCee----eeCCCCCCCCHHHHHHHHHHHH
Confidence 55556666 4777789999999999999984
No 10
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=21.43 E-value=1.3e+02 Score=26.09 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=40.0
Q ss_pred chhHHHHHHHHHhhcCCCCceEEeecCcccccccCCCCCCCCCChHHHHHHhhhccC---CCceEEEecCC
Q 008471 409 SRRLLDIVSAIASRLNWDYDAVHVERGEKARNKDLWPNLDADTSPDALISTLADKIE---NGRNVYIATNE 476 (564)
Q Consensus 409 skrLmdiv~~I~srm~~DfDavHVrRGDk~~nk~l~P~Ld~DtspE~i~~~i~~~I~---~GR~LYIATnE 476 (564)
|..|.+.|+.|.+. . .+.++-+- .+.+||++.+++++.|. .|.-|.|=||=
T Consensus 17 A~~l~~~a~~i~G~-~-~~~aid~~---------------~~~~~~~~~~~i~~~i~~~d~~~GVLiL~Dm 70 (130)
T 3gx1_A 17 ATSMVETVQELLSI-E-SGIALDMP---------------LTVEVKAMYEKLKQTVVKLNPVKGVLILSDM 70 (130)
T ss_dssp HHHHHHHHHHHHTC-C-CCEEEEEC---------------TTSCHHHHHHHHHHHHHTSCCTTCEEEEECS
T ss_pred HHHHHHHHHHHcCc-c-CEEEEEec---------------CCCCHHHHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 67899999999987 3 67777443 35789999999887765 47788888886
Done!