Query 008471
Match_columns 564
No_of_seqs 65 out of 67
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 04:21:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008471.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008471hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yzha1 c.66.1.53 (A:8-211) tR 58.6 3.9 0.00029 35.7 4.1 65 453-520 125-197 (204)
2 d2fcaa1 c.66.1.53 (A:10-213) t 24.2 19 0.0014 31.1 2.7 26 454-479 124-149 (204)
3 d1pdoa_ c.54.1.1 (A:) IIA doma 21.1 54 0.0039 26.1 4.7 56 408-479 12-70 (129)
4 d1gxha_ a.28.2.1 (A:) ImmE8 (I 18.5 28 0.002 27.8 2.3 31 431-465 45-75 (85)
5 d2vlqa1 a.28.2.1 (A:4-84) ImmE 16.8 35 0.0025 27.0 2.5 31 431-465 43-73 (81)
6 d1ayia_ a.28.2.1 (A:) ImmE7 pr 16.5 35 0.0025 27.3 2.4 31 431-465 47-77 (86)
7 d1a8ya1 c.47.1.3 (A:3-126) Cal 16.1 19 0.0014 27.9 0.7 32 123-157 71-103 (124)
8 d1jiha1 d.240.1.1 (A:390-509) 14.8 31 0.0022 27.7 1.7 55 410-464 25-92 (120)
9 d2b5ea4 c.47.1.2 (A:23-141) Pr 12.1 32 0.0023 26.3 1.0 32 123-156 64-95 (119)
10 d1p3da2 c.59.1.1 (A:322-473) U 11.0 31 0.0022 26.6 0.6 38 452-489 115-152 (152)
No 1
>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}
Probab=58.59 E-value=3.9 Score=35.69 Aligned_cols=65 Identities=17% Similarity=0.208 Sum_probs=38.8
Q ss_pred hHHHHHHhhhccCCCceEEEecCCCCccCccccccc-----e--eeeeccchhhhhccC-ChhhHhhhhccCCccc
Q 008471 453 PDALISTLADKIENGRNVYIATNEPDTSFFNPLKDK-----Y--STHFLDEYKDLWDEN-SEWYSETMKLNKGAAV 520 (564)
Q Consensus 453 pE~i~~~i~~~I~~GR~LYIATnE~~~~FFdpLk~k-----Y--~vhfLdDFk~Lw~~~-sewy~Et~~Ln~G~PV 520 (564)
-+++++.+...+.||..|||+||-.+ ||+-..+. + .....+.+..-+... .-+| |.+-+..|+||
T Consensus 125 ~~~~l~~~~~~LkpgG~l~i~TD~~~--Y~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~T~y-E~k~~~~G~~I 197 (204)
T d1yzha1 125 YKTFLDTFKRILPENGEIHFKTDNRG--LFEYSLVSFSQYGMKLNGVWLDLHASDFEGNVMTEY-EQKFSNKGQVI 197 (204)
T ss_dssp SHHHHHHHHHHSCTTCEEEEEESCHH--HHHHHHHHHHHHTCEEEEEESSGGGSCCCCCCCCHH-HHHTGGGCCCC
T ss_pred HHHHHHHHHHhCCCCcEEEEEECCcc--HHHHHHHHHHHCCcccccccccccccccCCCCCCHH-HHHHHHcCCCe
Confidence 47889999999999999999998544 34322111 1 112222233222211 1234 67788888887
No 2
>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}
Probab=24.16 E-value=19 Score=31.12 Aligned_cols=26 Identities=8% Similarity=0.254 Sum_probs=22.3
Q ss_pred HHHHHHhhhccCCCceEEEecCCCCc
Q 008471 454 DALISTLADKIENGRNVYIATNEPDT 479 (564)
Q Consensus 454 E~i~~~i~~~I~~GR~LYIATnE~~~ 479 (564)
.++++.+...+.||..|+||||-..+
T Consensus 124 ~~~l~~~~r~LkpgG~l~i~TD~~~y 149 (204)
T d2fcaa1 124 SHFLKKYEEVMGKGGSIHFKTDNRGL 149 (204)
T ss_dssp HHHHHHHHHHHTTSCEEEEEESCHHH
T ss_pred HHHHHHHHHhCCCCcEEEEEECChHH
Confidence 47899999999999999999986543
No 3
>d1pdoa_ c.54.1.1 (A:) IIA domain of mannose transporter, IIA-Man {Escherichia coli [TaxId: 562]}
Probab=21.14 E-value=54 Score=26.10 Aligned_cols=56 Identities=9% Similarity=0.195 Sum_probs=40.0
Q ss_pred cchhHHHHHHHHHhhcCCCCceEEeecCcccccccCCCCCCCCCChHHHHHHhhhcc---CCCceEEEecCCCCc
Q 008471 408 KSRRLLDIVSAIASRLNWDYDAVHVERGEKARNKDLWPNLDADTSPDALISTLADKI---ENGRNVYIATNEPDT 479 (564)
Q Consensus 408 ~skrLmdiv~~I~srm~~DfDavHVrRGDk~~nk~l~P~Ld~DtspE~i~~~i~~~I---~~GR~LYIATnE~~~ 479 (564)
-|+-|.+.|+-|.+... ++.++... .+.+++++.+++++.+ .++..+.|-||=..=
T Consensus 12 ~A~gl~~s~~~i~G~~~-~i~~i~~~---------------~~~~~~~~~~~~~~~i~~~~~~~~vliltDl~GG 70 (129)
T d1pdoa_ 12 AAEQLLKTAEMLLGEQE-NVGWIDFV---------------PGENAETLIEKYNAQLAKLDTTKGVLFLVDTWGG 70 (129)
T ss_dssp HHHHHHHHHHHHHCCCS-SEEEECBC---------------TTCCHHHHHHHHHHHHTTSCCTTCEEEEESSTTS
T ss_pred HHHHHHHHHHHHhCCCC-CeEEEEcc---------------CCCCHHHHHHHHHHHHHhcCCCCCEEEEEecccc
Confidence 46778889999887543 45444433 4678899999988777 467789999986443
No 4
>d1gxha_ a.28.2.1 (A:) ImmE8 (Im8) {Escherichia coli [TaxId: 562]}
Probab=18.55 E-value=28 Score=27.79 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=24.8
Q ss_pred EeecCcccccccCCCCCCCCCChHHHHHHhhhccC
Q 008471 431 HVERGEKARNKDLWPNLDADTSPDALISTLADKIE 465 (564)
Q Consensus 431 HVrRGDk~~nk~l~P~Ld~DtspE~i~~~i~~~I~ 465 (564)
|-...|.++ +|.=+++.|||-|++.|++|=.
T Consensus 45 HP~gsDLIf----YP~~~~edsPegIv~~IKeWRa 75 (85)
T d1gxha_ 45 HPSGSDLIY----YPEGNNDGSPEAVIKEIKEWRA 75 (85)
T ss_dssp CTTTTHHHH----SCCSSCSSCTHHHHHHHHHHHH
T ss_pred CCCCCceee----eCCCCCCCCHHHHHHHHHHHHH
Confidence 666666664 6777899999999999999843
No 5
>d2vlqa1 a.28.2.1 (A:4-84) ImmE9 protein (Im9) {Escherichia coli [TaxId: 562]}
Probab=16.80 E-value=35 Score=26.99 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=24.8
Q ss_pred EeecCcccccccCCCCCCCCCChHHHHHHhhhccC
Q 008471 431 HVERGEKARNKDLWPNLDADTSPDALISTLADKIE 465 (564)
Q Consensus 431 HVrRGDk~~nk~l~P~Ld~DtspE~i~~~i~~~I~ 465 (564)
|-...|.++ +|.=+++-|||-|++.|++|=.
T Consensus 43 HP~gsDLIf----YP~~~~edsPegIv~~IK~WRa 73 (81)
T d2vlqa1 43 HPSGSDLIY----YPKEGDDDSPSGIVNTVKQWRA 73 (81)
T ss_dssp CTTTTHHHH----SCCTTCCCSHHHHHHHHHHHHH
T ss_pred CCCCCceee----eCCCCCcCCHHHHHHHHHHHHH
Confidence 556677774 6677899999999999999843
No 6
>d1ayia_ a.28.2.1 (A:) ImmE7 protein (Im7) {Escherichia coli [TaxId: 562]}
Probab=16.47 E-value=35 Score=27.27 Aligned_cols=31 Identities=16% Similarity=0.386 Sum_probs=25.2
Q ss_pred EeecCcccccccCCCCCCCCCChHHHHHHhhhccC
Q 008471 431 HVERGEKARNKDLWPNLDADTSPDALISTLADKIE 465 (564)
Q Consensus 431 HVrRGDk~~nk~l~P~Ld~DtspE~i~~~i~~~I~ 465 (564)
|-..+|.++ +|.=+++-|||-|+..|++|=.
T Consensus 47 HP~gsDLIy----YP~~~~edsPegI~k~IKeWRa 77 (86)
T d1ayia_ 47 HPDGTDLIY----YPSDNRDDSPEGIVKEIKEWRA 77 (86)
T ss_dssp CTTTTHHHH----SCCTTSCCSHHHHHHHHHHHHH
T ss_pred CCCCCceee----eCCCCCCCCHHHHHHHHHHHHH
Confidence 666777774 6777999999999999999843
No 7
>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=16.12 E-value=19 Score=27.91 Aligned_cols=32 Identities=9% Similarity=0.219 Sum_probs=25.7
Q ss_pred CcccCC-CHHHHHHHHHHHhhhccccceeeeccccc
Q 008471 123 SPIDCT-DPEVFHLLMSKAIDQFKDIHFYRFGKAVR 157 (564)
Q Consensus 123 ~p~dCs-Dp~v~~~~~r~~~~~F~~i~f~~fg~PV~ 157 (564)
+-|||. +++ +.++++|+.||.|.||+=|.|+.
T Consensus 71 a~Vd~~~~~~---l~~~~~I~~yPTi~~f~~g~~~~ 103 (124)
T d1a8ya1 71 GLVDSEKDAA---VAKKLGLTEEDSIYVFKEDEVIE 103 (124)
T ss_dssp EEEETTTSHH---HHHTTTCCSTTCEEEEESSSEEE
T ss_pred EEEEeecccc---hhhccccccCCcEEEeccCccEE
Confidence 457777 444 57899999999999999888774
No 8
>d1jiha1 d.240.1.1 (A:390-509) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.79 E-value=31 Score=27.73 Aligned_cols=55 Identities=9% Similarity=0.001 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHhhcCCCCc-----------eEEeecCccccc-cc-CCCCCCCCCChHHHHHHhhhcc
Q 008471 410 RRLLDIVSAIASRLNWDYD-----------AVHVERGEKARN-KD-LWPNLDADTSPDALISTLADKI 464 (564)
Q Consensus 410 krLmdiv~~I~srm~~DfD-----------avHVrRGDk~~n-k~-l~P~Ld~DtspE~i~~~i~~~I 464 (564)
.-|...+.+|.+|+.-+-+ ++|+|-++++.. |+ -.|.-+.+...++|++..++.+
T Consensus 25 ~WL~~la~el~~RL~~~~~~~~~~~~~kTltl~~r~~~~~~~SRs~~i~~~~~~~~~~~i~~~a~~LL 92 (120)
T d1jiha1 25 SWLEVFCAELTSRIQDLEQEYNKIVIPRTVSISLKTKSYEVYRKSGPVAYKGINFQSHELLKVGIKFV 92 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEECTTCCEEEEEEECCCSSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccEEEEEEEeCCCCEecceeecCCCcccccHHHHHHHHHHHH
Confidence 5688899999999984333 799999887643 32 1455566777888887766555
No 9
>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.08 E-value=32 Score=26.34 Aligned_cols=32 Identities=25% Similarity=0.541 Sum_probs=24.3
Q ss_pred CcccCCCHHHHHHHHHHHhhhccccceeeecccc
Q 008471 123 SPIDCTDPEVFHLLMSKAIDQFKDIHFYRFGKAV 156 (564)
Q Consensus 123 ~p~dCsDp~v~~~~~r~~~~~F~~i~f~~fg~PV 156 (564)
+-|||.+-. .+..+++|..+|.|.||+=|..+
T Consensus 64 ~~vd~~~~~--~l~~~~~v~~~Pti~~f~~g~~~ 95 (119)
T d2b5ea4 64 AQIDCTENQ--DLCMEHNIPGFPSLKIFKNSDVN 95 (119)
T ss_dssp EEEETTTCH--HHHHHTTCCSSSEEEEEETTCTT
T ss_pred eeeeccchH--HHHHHhccccCCeEEEEECCEEe
Confidence 457777433 56788899999999999866554
No 10
>d1p3da2 c.59.1.1 (A:322-473) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}
Probab=11.04 E-value=31 Score=26.57 Aligned_cols=38 Identities=13% Similarity=0.186 Sum_probs=30.0
Q ss_pred ChHHHHHHhhhccCCCceEEEecCCCCccCccccccce
Q 008471 452 SPDALISTLADKIENGRNVYIATNEPDTSFFNPLKDKY 489 (564)
Q Consensus 452 spE~i~~~i~~~I~~GR~LYIATnE~~~~FFdpLk~kY 489 (564)
..+++++.+.+.+++|..|-|++++.-..+-..|.++|
T Consensus 115 ~~~~~i~~~~~~~~~gDiil~mGaGdi~~i~~~l~e~~ 152 (152)
T d1p3da2 115 DTSQLGDVLDQIIQDGDLILAQGAGSVSKISRGLAESW 152 (152)
T ss_dssp CGGGHHHHHHHHCCTTCEEEEECSSTHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhCCCCCEEEEEcCCCHHHHHHHHHhcC
Confidence 56788999999999999999999986655555555543
Done!