Query 008473
Match_columns 564
No_of_seqs 309 out of 1146
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 12:36:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008473.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008473hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4629 Predicted mechanosensi 100.0 8.5E-73 1.8E-77 628.5 32.7 428 100-562 144-579 (714)
2 PRK10334 mechanosensitive chan 99.7 8.7E-17 1.9E-21 165.8 15.3 103 453-563 63-167 (286)
3 PRK11281 hypothetical protein; 99.7 5.1E-14 1.1E-18 166.4 33.6 99 454-560 873-971 (1113)
4 PF00924 MS_channel: Mechanose 99.6 3.4E-16 7.4E-21 151.9 9.5 93 461-561 2-94 (206)
5 PRK11465 putative mechanosensi 99.6 3.7E-15 8E-20 169.1 14.1 104 452-563 506-611 (741)
6 PRK10929 putative mechanosensi 99.6 8.8E-15 1.9E-19 172.4 15.7 101 452-560 868-968 (1109)
7 COG0668 MscS Small-conductance 99.5 1.4E-13 2.9E-18 141.0 15.4 96 458-561 86-182 (316)
8 COG3264 Small-conductance mech 99.4 5.2E-12 1.1E-16 143.3 13.4 101 455-563 596-698 (835)
9 KOG0044 Ca2+ sensor (EF-Hand s 98.4 6.1E-07 1.3E-11 88.0 6.3 86 376-463 61-153 (193)
10 COG5126 FRQ1 Ca2+-binding prot 97.5 0.00016 3.4E-09 69.3 5.8 59 379-439 56-122 (160)
11 PF13499 EF-hand_7: EF-hand do 97.4 0.00023 4.9E-09 56.8 4.5 53 382-435 3-66 (66)
12 cd00052 EH Eps15 homology doma 97.2 0.0011 2.3E-08 52.5 6.1 57 382-439 2-63 (67)
13 smart00027 EH Eps15 homology d 97.1 0.0016 3.5E-08 56.4 6.7 64 378-442 9-77 (96)
14 KOG0034 Ca2+/calmodulin-depend 96.9 0.0034 7.3E-08 61.7 7.8 62 379-441 66-136 (187)
15 cd05026 S-100Z S-100Z: S-100Z 96.8 0.0037 8.1E-08 54.2 7.1 63 376-439 7-83 (93)
16 KOG0027 Calmodulin and related 96.8 0.0022 4.8E-08 60.0 5.9 63 379-442 44-118 (151)
17 cd05022 S-100A13 S-100A13: S-1 96.8 0.0053 1.2E-07 53.3 7.4 65 376-441 5-79 (89)
18 PF00036 EF-hand_1: EF hand; 96.8 0.0015 3.3E-08 45.1 3.2 28 409-437 1-28 (29)
19 cd05025 S-100A1 S-100A1: S-100 96.7 0.0057 1.2E-07 52.6 7.0 62 377-439 7-82 (92)
20 cd00213 S-100 S-100: S-100 dom 96.6 0.0065 1.4E-07 51.5 7.0 63 377-440 6-82 (88)
21 cd05029 S-100A6 S-100A6: S-100 96.5 0.0056 1.2E-07 52.8 5.8 60 379-439 10-81 (88)
22 cd05023 S-100A11 S-100A11: S-1 96.5 0.0082 1.8E-07 51.9 6.6 62 377-439 7-82 (89)
23 cd00051 EFh EF-hand, calcium b 96.3 0.0078 1.7E-07 45.1 4.9 53 382-435 3-62 (63)
24 PTZ00183 centrin; Provisional 96.2 0.012 2.6E-07 53.9 6.7 58 379-437 90-154 (158)
25 PLN02964 phosphatidylserine de 96.2 0.0071 1.5E-07 69.4 6.0 59 378-437 178-243 (644)
26 cd05031 S-100A10_like S-100A10 96.1 0.017 3.8E-07 49.8 6.8 61 376-437 5-79 (94)
27 PRK12309 transaldolase/EF-hand 96.1 0.011 2.4E-07 64.2 6.4 63 371-440 326-388 (391)
28 KOG0028 Ca2+-binding protein ( 96.1 0.009 1.9E-07 57.2 5.0 58 382-440 72-137 (172)
29 PF13833 EF-hand_8: EF-hand do 96.0 0.012 2.6E-07 45.2 4.9 44 393-437 2-53 (54)
30 PTZ00184 calmodulin; Provision 96.0 0.014 3E-07 52.6 5.8 59 379-438 47-113 (149)
31 PTZ00184 calmodulin; Provision 95.8 0.02 4.4E-07 51.6 6.3 57 379-436 84-147 (149)
32 cd05030 calgranulins Calgranul 95.8 0.03 6.5E-07 48.1 6.8 62 377-439 6-81 (88)
33 cd05027 S-100B S-100B: S-100B 95.7 0.032 6.9E-07 48.2 6.5 62 377-439 6-81 (88)
34 PTZ00183 centrin; Provisional 95.7 0.024 5.3E-07 51.9 6.1 60 379-439 53-120 (158)
35 cd00252 SPARC_EC SPARC_EC; ext 95.6 0.033 7.2E-07 50.7 6.5 59 376-435 45-106 (116)
36 COG5126 FRQ1 Ca2+-binding prot 95.0 0.033 7.2E-07 53.5 4.9 57 379-436 92-155 (160)
37 PF13405 EF-hand_6: EF-hand do 94.9 0.026 5.6E-07 39.0 2.9 28 409-437 1-28 (31)
38 KOG0027 Calmodulin and related 94.8 0.057 1.2E-06 50.5 5.6 65 379-444 8-79 (151)
39 PF13202 EF-hand_5: EF hand; P 94.1 0.049 1.1E-06 36.3 2.6 23 411-434 2-24 (25)
40 KOG0034 Ca2+/calmodulin-depend 92.2 0.22 4.9E-06 49.0 5.1 59 379-438 104-176 (187)
41 PF13499 EF-hand_7: EF-hand do 92.0 0.25 5.4E-06 39.1 4.4 31 410-441 2-32 (66)
42 KOG0038 Ca2+-binding kinase in 91.2 0.2 4.4E-06 47.5 3.4 61 379-440 71-139 (189)
43 KOG0037 Ca2+-binding protein, 90.7 1.6 3.5E-05 44.0 9.3 66 375-441 120-192 (221)
44 smart00054 EFh EF-hand, calciu 90.6 0.28 6E-06 30.8 2.7 28 409-437 1-28 (29)
45 cd05025 S-100A1 S-100A1: S-100 89.8 0.62 1.3E-05 39.9 5.0 29 408-437 9-39 (92)
46 PF12763 EF-hand_4: Cytoskelet 89.6 0.77 1.7E-05 41.1 5.5 61 379-441 10-75 (104)
47 cd05026 S-100Z S-100Z: S-100Z 89.0 0.69 1.5E-05 40.1 4.7 31 408-439 10-42 (93)
48 cd00213 S-100 S-100: S-100 dom 87.3 1.1 2.3E-05 37.9 4.7 29 408-437 8-38 (88)
49 KOG4223 Reticulocalbin, calume 87.0 0.85 1.9E-05 48.3 4.8 62 377-439 161-230 (325)
50 KOG0036 Predicted mitochondria 86.1 1.2 2.7E-05 48.6 5.5 62 378-440 50-113 (463)
51 cd05031 S-100A10_like S-100A10 85.8 1.4 3.1E-05 37.9 4.8 29 408-437 8-38 (94)
52 PF00036 EF-hand_1: EF hand; 84.0 0.76 1.6E-05 31.7 1.8 25 381-405 2-26 (29)
53 cd05024 S-100A10 S-100A10: A s 83.8 3.9 8.4E-05 35.9 6.6 60 378-439 7-78 (91)
54 cd05022 S-100A13 S-100A13: S-1 83.4 1.8 4E-05 37.5 4.5 31 408-439 8-40 (89)
55 PF09279 EF-hand_like: Phospho 82.9 1.4 3.1E-05 36.8 3.5 54 382-436 3-68 (83)
56 cd00052 EH Eps15 homology doma 82.8 1 2.3E-05 35.2 2.5 27 411-438 2-28 (67)
57 KOG2643 Ca2+ binding protein, 82.2 0.27 5.9E-06 53.7 -1.4 52 382-436 204-260 (489)
58 cd05027 S-100B S-100B: S-100B 81.8 2.7 5.8E-05 36.3 4.8 29 408-437 8-38 (88)
59 cd00252 SPARC_EC SPARC_EC; ext 81.0 1.8 3.8E-05 39.5 3.6 29 406-435 46-74 (116)
60 smart00027 EH Eps15 homology d 80.9 1.3 2.9E-05 38.1 2.7 29 408-437 10-38 (96)
61 KOG0044 Ca2+ sensor (EF-Hand s 80.7 4.6 9.9E-05 40.1 6.6 61 378-439 25-94 (193)
62 PLN02964 phosphatidylserine de 78.3 3.3 7.2E-05 48.1 5.5 57 381-439 145-209 (644)
63 PRK11281 hypothetical protein; 76.9 20 0.00044 44.3 11.8 64 139-205 835-898 (1113)
64 cd00051 EFh EF-hand, calcium b 76.8 2.4 5.3E-05 31.2 2.7 29 410-439 2-30 (63)
65 PF14658 EF-hand_9: EF-hand do 76.4 3.5 7.7E-05 34.1 3.7 54 383-437 2-64 (66)
66 PF13405 EF-hand_6: EF-hand do 76.0 1.8 4E-05 29.6 1.7 25 382-406 3-27 (31)
67 PF10591 SPARC_Ca_bdg: Secrete 74.5 3.4 7.4E-05 37.3 3.5 56 377-433 52-112 (113)
68 KOG0031 Myosin regulatory ligh 74.1 4.1 8.8E-05 39.3 4.0 48 391-439 76-131 (171)
69 KOG0036 Predicted mitochondria 73.3 4.6 0.0001 44.3 4.6 56 378-434 81-143 (463)
70 KOG0031 Myosin regulatory ligh 73.2 6.9 0.00015 37.7 5.3 60 376-436 98-164 (171)
71 PRK11465 putative mechanosensi 71.5 1.1E+02 0.0023 36.6 15.5 62 181-243 426-487 (741)
72 KOG0028 Ca2+-binding protein ( 71.0 11 0.00024 36.6 6.1 61 382-443 36-103 (172)
73 KOG0037 Ca2+-binding protein, 70.1 13 0.00028 37.7 6.6 55 384-439 99-154 (221)
74 KOG0038 Ca2+-binding kinase in 69.6 7.7 0.00017 37.2 4.7 57 381-438 110-178 (189)
75 PRK10929 putative mechanosensi 65.1 57 0.0012 40.6 12.0 95 108-205 783-895 (1109)
76 COG5346 Predicted membrane pro 64.6 1.1E+02 0.0023 28.7 10.7 22 484-505 110-131 (136)
77 PF13202 EF-hand_5: EF hand; P 63.6 5.2 0.00011 26.5 1.7 23 382-404 2-24 (25)
78 PF14788 EF-hand_10: EF hand; 62.2 11 0.00024 29.8 3.5 31 406-437 19-49 (51)
79 PF13833 EF-hand_8: EF-hand do 57.5 7.6 0.00016 29.5 1.9 27 379-405 25-51 (54)
80 KOG2562 Protein phosphatase 2 56.4 9.7 0.00021 42.4 3.2 64 364-433 341-420 (493)
81 KOG0041 Predicted Ca2+-binding 53.9 24 0.00051 35.6 5.1 56 379-435 99-161 (244)
82 KOG2562 Protein phosphatase 2 53.0 24 0.00051 39.5 5.4 61 378-439 310-381 (493)
83 KOG1341 Na+/K+ transporter [In 50.7 60 0.0013 37.8 8.2 100 105-204 464-608 (854)
84 KOG0046 Ca2+-binding actin-bun 49.6 21 0.00045 40.5 4.4 55 383-439 23-87 (627)
85 COG5117 NOC3 Protein involved 49.4 3E+02 0.0066 31.2 13.0 127 393-522 322-460 (657)
86 PF12174 RST: RCD1-SRO-TAF4 (R 48.3 36 0.00078 28.5 4.6 51 391-442 4-58 (70)
87 COG4709 Predicted membrane pro 47.8 1.1E+02 0.0025 30.5 8.7 8 398-405 43-50 (195)
88 KOG2643 Ca2+ binding protein, 45.8 44 0.00096 37.2 6.1 53 386-439 293-348 (489)
89 KOG1955 Ral-GTPase effector RA 45.6 43 0.00093 37.9 5.9 68 369-439 223-295 (737)
90 PF04156 IncA: IncA protein; 45.1 96 0.0021 29.9 7.9 29 489-523 40-68 (191)
91 KOG4629 Predicted mechanosensi 44.1 66 0.0014 38.1 7.5 115 91-207 129-245 (714)
92 cd05029 S-100A6 S-100A6: S-100 43.0 38 0.00083 29.1 4.2 29 409-437 11-40 (88)
93 PF14023 DUF4239: Protein of u 42.5 2E+02 0.0043 28.1 9.8 21 425-445 107-127 (209)
94 KOG0377 Protein serine/threoni 42.1 49 0.0011 37.0 5.7 61 379-440 547-618 (631)
95 PRK12309 transaldolase/EF-hand 39.4 23 0.00051 38.8 2.9 25 407-432 333-357 (391)
96 KOG4223 Reticulocalbin, calume 39.4 48 0.001 35.5 5.0 51 383-434 245-302 (325)
97 KOG0030 Myosin essential light 39.2 38 0.00083 32.3 3.8 25 414-439 94-118 (152)
98 KOG1053 Glutamate-gated NMDA-t 38.4 1.1E+02 0.0024 37.1 8.1 75 140-220 561-639 (1258)
99 PF08726 EFhand_Ca_insen: Ca2+ 36.7 15 0.00034 30.6 0.8 36 383-419 10-45 (69)
100 PF13239 2TM: 2TM domain 35.8 1.4E+02 0.003 25.2 6.5 48 105-161 13-60 (83)
101 cd05023 S-100A11 S-100A11: S-1 35.7 60 0.0013 28.0 4.3 30 409-439 10-41 (89)
102 PF03526 Microcin: Colicin E1 34.4 60 0.0013 26.0 3.6 35 225-259 8-42 (55)
103 PF14788 EF-hand_10: EF hand; 32.8 49 0.0011 26.2 2.9 28 378-405 20-47 (51)
104 PF14801 GCD14_N: tRNA methylt 32.2 37 0.00081 27.2 2.2 16 519-534 4-19 (54)
105 KOG4065 Uncharacterized conser 31.5 99 0.0021 28.7 5.1 58 405-463 63-123 (144)
106 smart00739 KOW KOW (Kyprides, 29.5 72 0.0016 20.7 3.0 26 520-547 1-26 (28)
107 PRK11877 psaI photosystem I re 29.3 29 0.00062 25.9 1.0 30 153-182 3-32 (38)
108 PF09204 Colicin_immun: Bacter 29.2 1.1E+02 0.0023 26.9 4.7 44 422-465 13-56 (88)
109 KOG0030 Myosin essential light 28.6 72 0.0016 30.5 3.8 49 386-436 95-150 (152)
110 KOG4251 Calcium binding protei 28.2 59 0.0013 33.8 3.4 58 377-435 99-166 (362)
111 PF05055 DUF677: Protein of un 27.3 5E+02 0.011 28.1 10.4 18 255-274 3-20 (336)
112 PF08285 DPM3: Dolichol-phosph 27.2 1.9E+02 0.0041 25.5 5.9 58 108-165 4-62 (91)
113 COG3336 Predicted membrane pro 27.1 8E+02 0.017 26.3 12.7 89 137-243 119-210 (299)
114 KOG0377 Protein serine/threoni 27.0 58 0.0013 36.5 3.3 32 407-439 546-577 (631)
115 PF14821 Thr_synth_N: Threonin 25.3 1.2E+02 0.0025 25.7 4.3 57 379-439 13-79 (79)
116 PF09926 DUF2158: Uncharacteri 24.8 73 0.0016 25.3 2.7 20 521-547 1-22 (53)
117 KOG0751 Mitochondrial aspartat 24.5 97 0.0021 35.3 4.4 46 391-437 86-136 (694)
118 KOG4251 Calcium binding protei 24.3 1.6E+02 0.0034 30.8 5.6 32 376-407 137-169 (362)
119 KOG3817 Uncharacterized conser 23.0 6.9E+02 0.015 27.6 10.2 56 197-252 233-291 (452)
120 cd04466 S1_YloQ_GTPase S1_YloQ 21.1 1.4E+02 0.0029 23.6 3.7 29 519-554 36-67 (68)
121 PF08006 DUF1700: Protein of u 20.7 7.5E+02 0.016 23.7 11.5 118 398-517 10-142 (181)
122 KOG0751 Mitochondrial aspartat 20.7 1.2E+02 0.0026 34.5 4.3 60 379-439 108-209 (694)
No 1
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=8.5e-73 Score=628.50 Aligned_cols=428 Identities=38% Similarity=0.643 Sum_probs=389.9
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHhHHHHHhhhhhccccccchhhH
Q 008473 100 KILKKPYVLIELAAFGCIMALLICSLTVKQLQNHVIWDFKLWKWCVFLLVIVSCRLVTKSLINALLFLIERNSSLRQRFM 179 (564)
Q Consensus 100 ~~~~~~~~~~r~~~~v~~~~~Ll~~~~i~~~~~~~i~~~~lw~w~v~~lv~~~g~lva~~~~~~~~fli~~~~~~~kk~~ 179 (564)
-.. ++..++.|+.++++++.++|++.|........|++..|+|++.+++..||+++..|..++++|+++.|+..+++|+
T Consensus 144 ~~~-~~~~~i~~I~~~~iv~~lv~~l~i~~~~~~~~~~~~~~kw~~~~~v~~~~~lv~~~~~~~vvf~~~~n~~~r~~~l 222 (714)
T KOG4629|consen 144 SLL-SSITVITWILLVLIVSSLVCSLGIHVHRLVTLWSLILWKWLVTLLVRITAVLVSSWFAALVVFLIESNFLRRKKVL 222 (714)
T ss_pred ccc-ccHHHHHHHHHHHHHHHHHhhhhhheecccceEEEEeeeehhhhHHHHHHHHHHhhHHHHHHHHhhhhHHHHHHHH
Confidence 444 4899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHhHHhHHHHHHHHH-HHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 008473 180 YYVHGLRIIIRVFVWLS-LFLLVRIFLFRHGVKRSKETTKILNYVTRVLASSLVGAALWCLKSFSVLLLAVSFQSKRFFN 258 (564)
Q Consensus 180 y~v~~L~~~v~~~~W~~-~~l~~~~~l~~~~~~~~~~~~~~l~~v~kvL~~~~v~a~i~l~ekiliq~IA~sFH~~~y~d 258 (564)
|+++|+++.++.|.|++ +++++|+.+++..+.+....+ .+..++++ +|+++.+.+|++||+++|++|++||+++|++
T Consensus 223 ~~v~~~~~~vq~~~~l~~lv~law~~l~d~~v~~~~r~~-~l~~~~~~-i~lli~~~~~lv~ti~~kv~as~f~~s~~~~ 300 (714)
T KOG4629|consen 223 YFVYGLRKFVQTGIWLGKLVLLAWIFLFDKIVFRKTRAK-FLAFVTML-ITLLITEFMWLVKTILMKVIASSFHRSTYFS 300 (714)
T ss_pred HHHhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhh-hhhhhhhh-hhhhHHHHHhhchhhhhHHHHHHHhHHHHHh
Confidence 99999999999999999 999999999998887665545 77899999 9999999999999999999999999999999
Q ss_pred hHHHhHHHHHHHHHhcCCCcchhhhhhccccCCC-------CccccccccchHhHHhhhccccchhhHHHHHHhhhcccc
Q 008473 259 PIQETIFHQYLIQTLSGPPLMEINEQVRSEAFGM-------SAGKEKYLIDVRKLKKIKRQKISAWTMKKLIDVARSSKL 331 (564)
Q Consensus 259 RIqesk~~~~~L~~L~~~~~~~~~~~~~~~~~~~-------~~~~ed~~i~~~~l~k~~~~~~sa~~mk~l~~~v~~~~l 331 (564)
||||++|+||+|++|++||+.| +.||.+.++ .-. ....+++++++++++.+.|||+|+++++.++..++
T Consensus 301 rI~e~~f~q~~l~~Lsg~p~~e---~~gr~s~~~~~~s~~~~r~-~s~~i~~~~l~~~~~~~~sa~~~~~~~~~~~~~~~ 376 (714)
T KOG4629|consen 301 RIQESVFTQEVLETLSGPPREE---DVGRESTFRAIFSPGLSRS-GSAKIGMDKLHKIKKKNVSAWNMRRLMTILAAGGL 376 (714)
T ss_pred hcchhhhhHHHHHHhcCCcccc---cccccccceeeccccccch-hhcccccchhhhhhHhhhcHhhhhHHHHHHhccCc
Confidence 9999999999999999999833 345432111 111 11227889999999999999999999999999999
Q ss_pred cchhhhhhhhhcccccCccccccccCCCchhHHHhhhhccCCHHHHHHHHHHHHHHhccCCCccccHhHHhhcCCHHHHH
Q 008473 332 SVFSNQLEEFAEEEEDGEDGEIFKNANDKSDEELQMYKSIKSEFEAKSAANYIFKNVADTGCDYIGKEQLYRFLIAEEVS 411 (564)
Q Consensus 332 st~~~~~~~~~~v~~e~tg~~v~~~~~~~s~v~~al~~~i~se~eAkalAr~IF~s~~~~g~~~I~~eDl~~fl~~eeA~ 411 (564)
++++........ .+.. ..++.|+++|+++|++||+++++||..++++||+.+|+++|+|+
T Consensus 377 t~l~~~~~~s~~--~~~~------------------~~~i~s~~~a~~aA~~iF~nv~~p~~~~i~ld~~~~f~~~E~a~ 436 (714)
T KOG4629|consen 377 TTLSPGFQLSTS--KDSS------------------IIEIRSEKEAKIAARKIFKNVAKPGVILIDLDDLLRFMGDEEAE 436 (714)
T ss_pred ccCCcccccccc--ccch------------------hhhhhhhhhHHHHHHHHHhccCCCCccchhhhhhhhcCCHHHHH
Confidence 988876543210 0000 25789999999999999999999999999999999999999999
Q ss_pred HHHHhccccCCCCcccHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 008473 412 LLLNQFEGAAKTEKIQELEFKKWVLKVYNERKALSHFIKQSKAATQELNRLFTGIVVVVIIILWLILMGFLTTQALVFIT 491 (564)
Q Consensus 412 ~aF~lFD~d~~nG~IS~~El~~~v~~i~~ERk~L~~SL~d~~t~i~~L~~il~~iv~iI~iii~L~ilgv~~t~lla~~g 491 (564)
.+|++|+.. ..+.||++++++|++++|+||++|+++|+|+++++++||+++++++.++++++++..+|++++++++.++
T Consensus 437 ~~~slfe~~-~~~~Itrs~~~~~iv~~~~ERk~L~~tL~d~~taV~kL~~il~~Iv~vv~~~i~lil~~i~~~~~l~~~~ 515 (714)
T KOG4629|consen 437 RAFSLFEGA-SDENITRSSFKEWIVNIYRERKALARTLNDTKTAVNKLDRILNFIVAVVLLVIWLILLGINTSKLLLVIS 515 (714)
T ss_pred HHHHhhhhh-cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeeeeec
Confidence 999999997 4444999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHhHhhhhhhcCCcCCCcEEEECCccccccccccEEEEEeeeEEEEEecCCcccc
Q 008473 492 SQLVLAAFMFGNTVKNIFESIIFLYVMHPFDVGDRCIIDGVQVTDIFILKIEVCVSLLYRVLFALQLFITD 562 (564)
Q Consensus 492 s~~lalsF~f~~t~~n~~~siIFIfv~hPFdVGDrV~I~g~~~~~~~~~~~VeeI~Ll~Tvf~~~dG~v~~ 562 (564)
+++++++|+|+++++++++|+||+|+.|||||||||.|||+++ +|++|||++|+|.++||+++.
T Consensus 516 sq~v~l~fif~~~~k~~~esiIFlfv~HPyDvGDRv~VDg~~~-------vVeemnLlsTvF~~~dg~kI~ 579 (714)
T KOG4629|consen 516 SQLVGLAFIFGNIVKELLESIIFLFVMHPYDVGDRVVVDGVNL-------VVEEMNLLSTVFLRVDGRKIF 579 (714)
T ss_pred ccceeeeeehhhHHHHHHHHHhheeecCCCCCCCeEEEeceEE-------EEEEeccceEEEEEECCeEEE
Confidence 9999999999999999999999999999999999999999999 999999999999999998763
No 2
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=99.72 E-value=8.7e-17 Score=165.77 Aligned_cols=103 Identities=15% Similarity=0.219 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHhHhhhhhhcCCcCCCcEEEECCc
Q 008473 453 KAATQELNRLFTGIVVVVIIILWLILMGFLTTQALVFITSQLVLAAFMFGNTVKNIFESIIFLYVMHPFDVGDRCIIDGV 532 (564)
Q Consensus 453 ~t~i~~L~~il~~iv~iI~iii~L~ilgv~~t~lla~~gs~~lalsF~f~~t~~n~~~siIFIfv~hPFdVGDrV~I~g~ 532 (564)
.+..+.+.+++.+++++++++++|..+|++++++++++|..++++||++|++++|+++|++ |++.+||+|||+|+++|.
T Consensus 63 ~~~~~~~~~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G~~glaiG~a~q~~l~N~~sGi~-i~~~rpf~vGD~I~i~~~ 141 (286)
T PRK10334 63 ATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLAAGVL-LVMFRPFRAGEYVDLGGV 141 (286)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCCCCCEEEECCE
Confidence 3566778889999999999999999999999999999999999999999999999999996 999999999999999999
Q ss_pred cccccccccEEEEEeeeEEEEEecCCcc--ccC
Q 008473 533 QVTDIFILKIEVCVSLLYRVLFALQLFI--TDG 563 (564)
Q Consensus 533 ~~~~~~~~~~VeeI~Ll~Tvf~~~dG~v--~~~ 563 (564)
.| +|++|++++|.++++||+. +||
T Consensus 142 ~G-------~V~~I~~r~T~i~t~d~~~v~IPN 167 (286)
T PRK10334 142 AG-------TVLSVQIFSTTMRTADGKIIVIPN 167 (286)
T ss_pred EE-------EEEEEEeEEEEEEcCCCCEEEEcc
Confidence 98 8999999999999999976 555
No 3
>PRK11281 hypothetical protein; Provisional
Probab=99.68 E-value=5.1e-14 Score=166.42 Aligned_cols=99 Identities=13% Similarity=0.152 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHhHhhhhhhcCCcCCCcEEEECCcc
Q 008473 454 AATQELNRLFTGIVVVVIIILWLILMGFLTTQALVFITSQLVLAAFMFGNTVKNIFESIIFLYVMHPFDVGDRCIIDGVQ 533 (564)
Q Consensus 454 t~i~~L~~il~~iv~iI~iii~L~ilgv~~t~lla~~gs~~lalsF~f~~t~~n~~~siIFIfv~hPFdVGDrV~I~g~~ 533 (564)
+....+.+++.++++++++++++..+|++.+++.+.+|+.++|+||++|++++|+++|++ |++.+||+|||+|+|+|..
T Consensus 873 ~~~~~i~~li~y~I~~i~iliaL~~lGi~~t~L~~l~gaLgVgIGfglQ~ilsNfISGii-Il~eRPfrIGD~I~I~~~~ 951 (1113)
T PRK11281 873 GTSYAITTLLTYIIIAVGAVTAFSTLGVSWDKLQWLVAALSVGLGFGLQEIFANFVSGLI-ILFERPVRIGDTVTIGTFS 951 (1113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcCCCCEEEECCEE
Confidence 445667788999999999999999999999999999999999999999999999999997 9999999999999999999
Q ss_pred ccccccccEEEEEeeeEEEEEecCCcc
Q 008473 534 VTDIFILKIEVCVSLLYRVLFALQLFI 560 (564)
Q Consensus 534 ~~~~~~~~~VeeI~Ll~Tvf~~~dG~v 560 (564)
| +|++|++++|+++++||+.
T Consensus 952 G-------~V~~I~lRsT~Irt~D~~~ 971 (1113)
T PRK11281 952 G-------TVSKIRIRATTITDFDRKE 971 (1113)
T ss_pred E-------EEEEEEeEEEEEEcCCCCE
Confidence 8 8999999999999999964
No 4
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=99.65 E-value=3.4e-16 Score=151.87 Aligned_cols=93 Identities=24% Similarity=0.340 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHhHhhhhhhcCCcCCCcEEEECCccccccccc
Q 008473 461 RLFTGIVVVVIIILWLILMGFLTTQALVFITSQLVLAAFMFGNTVKNIFESIIFLYVMHPFDVGDRCIIDGVQVTDIFIL 540 (564)
Q Consensus 461 ~il~~iv~iI~iii~L~ilgv~~t~lla~~gs~~lalsF~f~~t~~n~~~siIFIfv~hPFdVGDrV~I~g~~~~~~~~~ 540 (564)
+++.++++++++++++..+|++.+++++.+|..+++++|++|++++|+++|++ +++.+||++||+|+|+|..|
T Consensus 2 ~i~~~~~~~~~~~~~l~~~g~~~~~l~~~~g~~~~~i~f~~~~~~~n~~~gi~-i~~~~pf~vGD~I~i~~~~G------ 74 (206)
T PF00924_consen 2 KIIRIVIIIVGILIILSILGIDVSSLLASLGVLGLAIGFAFQDIISNFISGII-ILFERPFKVGDRIEIGGVEG------ 74 (206)
T ss_dssp -HHHHHHHHHHHHHHHHCCT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHH-HHCC-SS-TT-EEESSS-EE------
T ss_pred hHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCCccCCCEEEEEEeeh------
Confidence 57788888999999999999999999999999999999999999999999986 89999999999999999999
Q ss_pred cEEEEEeeeEEEEEecCCccc
Q 008473 541 KIEVCVSLLYRVLFALQLFIT 561 (564)
Q Consensus 541 ~~VeeI~Ll~Tvf~~~dG~v~ 561 (564)
.|++|++++|+++++||+++
T Consensus 75 -~V~~I~l~~t~l~~~~g~~v 94 (206)
T PF00924_consen 75 -RVEEIGLRSTRLRTWDGEIV 94 (206)
T ss_dssp -EEEEE-SSEEEEEETTS-EE
T ss_pred -HHHhcCcceeeeecCCCCEE
Confidence 99999999999999999654
No 5
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=99.61 E-value=3.7e-15 Score=169.12 Aligned_cols=104 Identities=13% Similarity=0.067 Sum_probs=97.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHhHhhhhhhcCCcCCCcEEEECC
Q 008473 452 SKAATQELNRLFTGIVVVVIIILWLILMGFLTTQALVFITSQLVLAAFMFGNTVKNIFESIIFLYVMHPFDVGDRCIIDG 531 (564)
Q Consensus 452 ~~t~i~~L~~il~~iv~iI~iii~L~ilgv~~t~lla~~gs~~lalsF~f~~t~~n~~~siIFIfv~hPFdVGDrV~I~g 531 (564)
..++...+.+++.+++++++++++|..+|++++++++++|..++++||++|++++|+++|+ ||++.+||+|||+|+++|
T Consensus 506 ~~Tl~~ll~~~~~~~i~~i~~l~vL~~lGi~it~LlA~aGi~GlaiGfaaQ~~l~N~isGi-~Il~e~pf~vGD~I~v~g 584 (741)
T PRK11465 506 TRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGV-FIQFENGMNTGDLVTIGP 584 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcCCCCEEEECC
Confidence 4688899999999999999999999999999999999999999999999999999999998 599999999999999999
Q ss_pred ccccccccccEEEEEeeeEEEEEecCCcc--ccC
Q 008473 532 VQVTDIFILKIEVCVSLLYRVLFALQLFI--TDG 563 (564)
Q Consensus 532 ~~~~~~~~~~~VeeI~Ll~Tvf~~~dG~v--~~~ 563 (564)
..| +||+|++++|.+|++||+. +||
T Consensus 585 ~~G-------tVe~I~lRsT~iRt~dg~~i~IPN 611 (741)
T PRK11465 585 LTG-------TVERMSIRSVGVRQDTGAYHIIPW 611 (741)
T ss_pred eEE-------EEEEEeeeEEEEEcCCCCEEEEEC
Confidence 998 8999999999999999954 454
No 6
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=99.60 E-value=8.8e-15 Score=172.35 Aligned_cols=101 Identities=9% Similarity=0.107 Sum_probs=95.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHhHhhhhhhcCCcCCCcEEEECC
Q 008473 452 SKAATQELNRLFTGIVVVVIIILWLILMGFLTTQALVFITSQLVLAAFMFGNTVKNIFESIIFLYVMHPFDVGDRCIIDG 531 (564)
Q Consensus 452 ~~t~i~~L~~il~~iv~iI~iii~L~ilgv~~t~lla~~gs~~lalsF~f~~t~~n~~~siIFIfv~hPFdVGDrV~I~g 531 (564)
..+....+.+++.++++++++++++..+|++.+++.+.+|+.++|+||++|++++|+++|++ |++.+||+|||+|+|+|
T Consensus 868 ~~~~~~~i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~galGVgIGfAlQ~ilsNfiSGIi-IL~erPfrVGD~I~I~~ 946 (1109)
T PRK10929 868 TPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALGVGLGFGLQEIFANFISGLI-ILFEKPIRIGDTVTIRD 946 (1109)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCCCCEEEECC
Confidence 34677788899999999999999999999999999999999999999999999999999996 99999999999999999
Q ss_pred ccccccccccEEEEEeeeEEEEEecCCcc
Q 008473 532 VQVTDIFILKIEVCVSLLYRVLFALQLFI 560 (564)
Q Consensus 532 ~~~~~~~~~~~VeeI~Ll~Tvf~~~dG~v 560 (564)
..| +|++|++++|+++++||+.
T Consensus 947 ~~G-------tV~~I~lRsT~Irt~Dg~~ 968 (1109)
T PRK10929 947 LTG-------SVTKINTRATTISDWDRKE 968 (1109)
T ss_pred EEE-------EEEEEeeeEEEEEeCCCCE
Confidence 998 8999999999999999974
No 7
>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=99.53 E-value=1.4e-13 Score=140.99 Aligned_cols=96 Identities=23% Similarity=0.307 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHhHhhhhhhcCCcCCCcEEEEC-Cccccc
Q 008473 458 ELNRLFTGIVVVVIIILWLILMGFLTTQALVFITSQLVLAAFMFGNTVKNIFESIIFLYVMHPFDVGDRCIID-GVQVTD 536 (564)
Q Consensus 458 ~L~~il~~iv~iI~iii~L~ilgv~~t~lla~~gs~~lalsF~f~~t~~n~~~siIFIfv~hPFdVGDrV~I~-g~~~~~ 536 (564)
.+.+++.++++++++++++..+|++.+++++++|..++++||++|++++|+++|++ +.+.|||++||+|+++ +..|
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~lla~~G~~glaigla~q~~~~n~~~Gi~-il~~~~f~vGD~I~i~~~~~G-- 162 (316)
T COG0668 86 FLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLAIGLALQDLLSNLIAGIF-LLLERPFKVGDWIEIGSGVEG-- 162 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhH-hheecCcCcCCEEEECCCceE--
Confidence 67888999999999999999999999999999999999999999999999999985 7779999999999999 6888
Q ss_pred cccccEEEEEeeeEEEEEecCCccc
Q 008473 537 IFILKIEVCVSLLYRVLFALQLFIT 561 (564)
Q Consensus 537 ~~~~~~VeeI~Ll~Tvf~~~dG~v~ 561 (564)
.|++|++++|.++++||.++
T Consensus 163 -----~V~~i~~~~T~ir~~dg~~v 182 (316)
T COG0668 163 -----TVEDIGLRSTTIRTLDGRIV 182 (316)
T ss_pred -----EEEEEEEEEEEEEcCCCCEE
Confidence 89999999999999999765
No 8
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=99.35 E-value=5.2e-12 Score=143.28 Aligned_cols=101 Identities=16% Similarity=0.159 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHhHhhhhhhcCCcCCCcEEEECCccc
Q 008473 455 ATQELNRLFTGIVVVVIIILWLILMGFLTTQALVFITSQLVLAAFMFGNTVKNIFESIIFLYVMHPFDVGDRCIIDGVQV 534 (564)
Q Consensus 455 ~i~~L~~il~~iv~iI~iii~L~ilgv~~t~lla~~gs~~lalsF~f~~t~~n~~~siIFIfv~hPFdVGDrV~I~g~~~ 534 (564)
.-..+..++.++++.++.++.++.+|++.+++...+|+.++|+||..|+..+||.+|+| |++++|++|||+|++++..|
T Consensus 596 ~r~~I~t~~~Y~~~~i~~l~~lS~~Gi~lssL~~~~gALsvGiGFGLQ~I~~NFVSGlI-iL~ErpvkvGD~It~g~~~G 674 (835)
T COG3264 596 TRYSITTLLGYLLIAIGGLVGLSTLGIDLSSLQWLAGALSVGLGFGLQEIVSNFVSGLI-ILFERPVKVGDTVTIGTVSG 674 (835)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHhhhhhchhHHHHHHHhhhhhh-hheecCcccCCEEEECCceE
Confidence 34467778899999999999999999999999999999999999999999999999999 99999999999999999998
Q ss_pred cccccccEEEEEeeeEEEEEecCCc--cccC
Q 008473 535 TDIFILKIEVCVSLLYRVLFALQLF--ITDG 563 (564)
Q Consensus 535 ~~~~~~~~VeeI~Ll~Tvf~~~dG~--v~~~ 563 (564)
+|.+|+.+.|+++++||+ +|||
T Consensus 675 -------~V~~I~vRAT~I~~fd~~~vIVPN 698 (835)
T COG3264 675 -------TVRKISVRATTIRTFDRKEVIVPN 698 (835)
T ss_pred -------EEEEEEeeEEEEEeCCCCeEEecc
Confidence 899999999999999993 4554
No 9
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.36 E-value=6.1e-07 Score=88.05 Aligned_cols=86 Identities=14% Similarity=0.202 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhccCCCccccHhHHhhcCC-------HHHHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhhhhhhh
Q 008473 376 EAKSAANYIFKNVADTGCDYIGKEQLYRFLI-------AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYNERKALSHF 448 (564)
Q Consensus 376 eAkalAr~IF~s~~~~g~~~I~~eDl~~fl~-------~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~~ERk~L~~S 448 (564)
++...|+++|+.|+.+++++|+++||...++ +|.++|+|.++|.| +||.||++||.+.+..+|..-......
T Consensus 61 d~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~d-gdG~It~~Eml~iv~~i~~m~~~~~~~ 139 (193)
T KOG0044|consen 61 DASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLD-GDGYITKEEMLKIVQAIYQMTGSKALP 139 (193)
T ss_pred CHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCC-CCceEcHHHHHHHHHHHHHHcccccCC
Confidence 3679999999999999999999999988664 78899999999999 999999999999999999765553434
Q ss_pred hhchhHHHHHHHHHH
Q 008473 449 IKQSKAATQELNRLF 463 (564)
Q Consensus 449 L~d~~t~i~~L~~il 463 (564)
.+.++.-...++++
T Consensus 140 -~~~~~~~~~v~~if 153 (193)
T KOG0044|consen 140 -EDEETPEERVDKIF 153 (193)
T ss_pred -cccccHHHHHHHHH
Confidence 45555666666554
No 10
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=97.51 E-value=0.00016 Score=69.27 Aligned_cols=59 Identities=14% Similarity=0.234 Sum_probs=54.7
Q ss_pred HHHHHHHHHhccCCCccccHhHHhhcCC--------HHHHHHHHHhccccCCCCcccHHHHHHHHHHHH
Q 008473 379 SAANYIFKNVADTGCDYIGKEQLYRFLI--------AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (564)
Q Consensus 379 alAr~IF~s~~~~g~~~I~~eDl~~fl~--------~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~ 439 (564)
+.+.+|+..++. |.++|++++|+.+|+ +||..+||++||.| ++|.|+..||+.++....
T Consensus 56 ~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d-~dG~Is~~eL~~vl~~lg 122 (160)
T COG5126 56 AEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKD-HDGYISIGELRRVLKSLG 122 (160)
T ss_pred HHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCC-CCceecHHHHHHHHHhhc
Confidence 789999999998 999999999999885 69999999999999 999999999999998554
No 11
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.39 E-value=0.00023 Score=56.84 Aligned_cols=53 Identities=28% Similarity=0.437 Sum_probs=45.8
Q ss_pred HHHHHHhccCCCccccHhHHhhcCC-------H----HHHHHHHHhccccCCCCcccHHHHHHHH
Q 008473 382 NYIFKNVADTGCDYIGKEQLYRFLI-------A----EEVSLLLNQFEGAAKTEKIQELEFKKWV 435 (564)
Q Consensus 382 r~IF~s~~~~g~~~I~~eDl~~fl~-------~----eeA~~aF~lFD~d~~nG~IS~~El~~~v 435 (564)
+++|+.++.+++++|+.+||..++. + +.++.+|..+|.+ ++|.|+.+||...+
T Consensus 3 ~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d-~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 3 KEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTD-GDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTT-SSSSEEHHHHHHHH
T ss_pred HHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCC-CcCCCcHHHHhccC
Confidence 6899999999999999999998652 2 4566679999999 99999999998763
No 12
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.17 E-value=0.0011 Score=52.50 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=50.9
Q ss_pred HHHHHHhccCCCccccHhHHhhcC-----CHHHHHHHHHhccccCCCCcccHHHHHHHHHHHH
Q 008473 382 NYIFKNVADTGCDYIGKEQLYRFL-----IAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (564)
Q Consensus 382 r~IF~s~~~~g~~~I~~eDl~~fl-----~~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~ 439 (564)
+++|..++.+++++|+.+++..++ ++++++..|..+|.+ ++|.|+.+|+...+..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~-~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTD-KDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCC-CCCcCCHHHHHHHHHHHH
Confidence 568999999999999999998866 578899999999999 999999999998877665
No 13
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.06 E-value=0.0016 Score=56.43 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhccCCCccccHhHHhhcC-----CHHHHHHHHHhccccCCCCcccHHHHHHHHHHHHHHh
Q 008473 378 KSAANYIFKNVADTGCDYIGKEQLYRFL-----IAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYNER 442 (564)
Q Consensus 378 kalAr~IF~s~~~~g~~~I~~eDl~~fl-----~~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~~ER 442 (564)
..-.+.+|..++.+++++|+.+|+.++| ++++++++|..+|.+ ++|.|+.+||...+..+.+-.
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~-~~g~I~~~eF~~~~~~~~~~~ 77 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADID-NDGELDKDEFALAMHLIYRKL 77 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCC-CCCCcCHHHHHHHHHHHHHHH
Confidence 4567889999999999999999998866 478999999999999 999999999999888887554
No 14
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=96.87 E-value=0.0034 Score=61.70 Aligned_cols=62 Identities=18% Similarity=0.233 Sum_probs=55.7
Q ss_pred HHHHHHHHHhccCCCcc-ccHhHHhhcCC--------HHHHHHHHHhccccCCCCcccHHHHHHHHHHHHHH
Q 008473 379 SAANYIFKNVADTGCDY-IGKEQLYRFLI--------AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYNE 441 (564)
Q Consensus 379 alAr~IF~s~~~~g~~~-I~~eDl~~fl~--------~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~~E 441 (564)
=++.+|+..+..++++. |++++|.+.++ +++++-||++||.+ ++|.|+++|+...+.....+
T Consensus 66 p~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~-~~G~I~reel~~iv~~~~~~ 136 (187)
T KOG0034|consen 66 PLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLD-GDGFISREELKQILRMMVGE 136 (187)
T ss_pred cHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCC-CCCcCcHHHHHHHHHHHHcc
Confidence 58999999999988888 99999999764 45889999999999 99999999999999988854
No 15
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=96.85 E-value=0.0037 Score=54.25 Aligned_cols=63 Identities=22% Similarity=0.261 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhc-cCCCc-cccHhHHhhcCC------------HHHHHHHHHhccccCCCCcccHHHHHHHHHHHH
Q 008473 376 EAKSAANYIFKNVA-DTGCD-YIGKEQLYRFLI------------AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (564)
Q Consensus 376 eAkalAr~IF~s~~-~~g~~-~I~~eDl~~fl~------------~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~ 439 (564)
.|-.-++++|..++ .+|++ +|+.+||...+. +++++++++-+|.+ ++|.|+.+||...+..+.
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n-~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSN-KDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHHH
Confidence 45677889999999 57887 599999998762 35799999999999 999999999988776653
No 16
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=96.81 E-value=0.0022 Score=59.96 Aligned_cols=63 Identities=17% Similarity=0.185 Sum_probs=55.1
Q ss_pred HHHHHHHHHhccCCCccccHhHHhhcCC------------HHHHHHHHHhccccCCCCcccHHHHHHHHHHHHHHh
Q 008473 379 SAANYIFKNVADTGCDYIGKEQLYRFLI------------AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYNER 442 (564)
Q Consensus 379 alAr~IF~s~~~~g~~~I~~eDl~~fl~------------~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~~ER 442 (564)
+-.+.++..++.+|++.|++++|...+. .++..+||.+||.| ++|.||.+|++..+.+...+.
T Consensus 44 ~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d-~~G~Is~~el~~~l~~lg~~~ 118 (151)
T KOG0027|consen 44 EELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKD-GDGFISASELKKVLTSLGEKL 118 (151)
T ss_pred HHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccC-CCCcCcHHHHHHHHHHhCCcC
Confidence 5567888999999999999999998664 23899999999999 999999999999999988443
No 17
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=96.76 E-value=0.0053 Score=53.26 Aligned_cols=65 Identities=12% Similarity=0.145 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcc-CCCccccHhHHhhcCC--------H-HHHHHHHHhccccCCCCcccHHHHHHHHHHHHHH
Q 008473 376 EAKSAANYIFKNVAD-TGCDYIGKEQLYRFLI--------A-EEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYNE 441 (564)
Q Consensus 376 eAkalAr~IF~s~~~-~g~~~I~~eDl~~fl~--------~-eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~~E 441 (564)
+|-.--+.+|+.+++ +|+++|+.++|...+. + +++++.|.-+|.| ++|.|+.+||...+..+-..
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d-~DG~I~F~EF~~l~~~l~~~ 79 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVN-QDSKLSFEEFWELIGELAKA 79 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCC-CCCCCcHHHHHHHHHHHHHH
Confidence 356677899999999 9999999999987552 3 7899999999999 99999999998888776544
No 18
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=96.75 E-value=0.0015 Score=45.12 Aligned_cols=28 Identities=29% Similarity=0.359 Sum_probs=25.4
Q ss_pred HHHHHHHhccccCCCCcccHHHHHHHHHH
Q 008473 409 EVSLLLNQFEGAAKTEKIQELEFKKWVLK 437 (564)
Q Consensus 409 eA~~aF~lFD~d~~nG~IS~~El~~~v~~ 437 (564)
|++++|+.||.| ++|.|+.+||...+.+
T Consensus 1 E~~~~F~~~D~d-~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKD-GDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTT-SSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCC-CCCcCCHHHHHHHHHh
Confidence 678999999999 9999999999988754
No 19
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=96.68 E-value=0.0057 Score=52.55 Aligned_cols=62 Identities=19% Similarity=0.301 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhc-cCCCcc-ccHhHHhhcC------------CHHHHHHHHHhccccCCCCcccHHHHHHHHHHHH
Q 008473 377 AKSAANYIFKNVA-DTGCDY-IGKEQLYRFL------------IAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (564)
Q Consensus 377 AkalAr~IF~s~~-~~g~~~-I~~eDl~~fl------------~~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~ 439 (564)
|..-.+++|..++ ++|+++ |+.+||...| ++++++.+|+.+|.+ ++|.|+.+||...+..+.
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d-~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDEN-GDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCC-CCCcCcHHHHHHHHHHHH
Confidence 5566888999997 999995 9999998765 357899999999999 999999999988776654
No 20
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=96.64 E-value=0.0065 Score=51.50 Aligned_cols=63 Identities=21% Similarity=0.234 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcc--CCCccccHhHHhhcCC------------HHHHHHHHHhccccCCCCcccHHHHHHHHHHHHH
Q 008473 377 AKSAANYIFKNVAD--TGCDYIGKEQLYRFLI------------AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYN 440 (564)
Q Consensus 377 AkalAr~IF~s~~~--~g~~~I~~eDl~~fl~------------~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~~ 440 (564)
..+-.+.+|..+++ +|+++|+.++|..++. +++++.+|..||.+ ++|.|+.++|...+....+
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~-~~g~I~f~eF~~~~~~~~~ 82 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVN-KDGKVDFQEFLVLIGKLAV 82 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccC-CCCcCcHHHHHHHHHHHHH
Confidence 34557889999999 7999999999988641 68899999999999 9999999999998887754
No 21
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=96.51 E-value=0.0056 Score=52.81 Aligned_cols=60 Identities=15% Similarity=0.300 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcc-CC-CccccHhHHhhcC----------CHHHHHHHHHhccccCCCCcccHHHHHHHHHHHH
Q 008473 379 SAANYIFKNVAD-TG-CDYIGKEQLYRFL----------IAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (564)
Q Consensus 379 alAr~IF~s~~~-~g-~~~I~~eDl~~fl----------~~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~ 439 (564)
.--=.+|..++. +| +++|+.+||..++ +++|+++.|+-+|.| ++|.|+.+||...+.++.
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d-~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRN-KDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCC-CCCCCcHHHHHHHHHHHH
Confidence 344568999997 67 7899999998866 378999999999999 999999999998887664
No 22
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=96.46 E-value=0.0082 Score=51.94 Aligned_cols=62 Identities=10% Similarity=0.199 Sum_probs=51.8
Q ss_pred HHHHHHHHHHH-hccCCCc-cccHhHHhhcCCH------------HHHHHHHHhccccCCCCcccHHHHHHHHHHHH
Q 008473 377 AKSAANYIFKN-VADTGCD-YIGKEQLYRFLIA------------EEVSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (564)
Q Consensus 377 AkalAr~IF~s-~~~~g~~-~I~~eDl~~fl~~------------eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~ 439 (564)
|-..-..+|+. ++++|++ +|+.+||..++.. +++++.++-+|.| ++|.|+.+||...+..+.
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d-~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLN-SDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCC-CCCcCcHHHHHHHHHHHH
Confidence 44555788999 6677865 9999999998853 5789999999999 999999999999888765
No 23
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=96.29 E-value=0.0078 Score=45.12 Aligned_cols=53 Identities=21% Similarity=0.266 Sum_probs=46.0
Q ss_pred HHHHHHhccCCCccccHhHHhhcC-------CHHHHHHHHHhccccCCCCcccHHHHHHHH
Q 008473 382 NYIFKNVADTGCDYIGKEQLYRFL-------IAEEVSLLLNQFEGAAKTEKIQELEFKKWV 435 (564)
Q Consensus 382 r~IF~s~~~~g~~~I~~eDl~~fl-------~~eeA~~aF~lFD~d~~nG~IS~~El~~~v 435 (564)
+.+|..++.++++.|+.+|+...+ +.+++..+|..+|.+ ++|.|+.++|...+
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ef~~~~ 62 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKD-GDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC-CCCeEeHHHHHHHh
Confidence 578999999999999999998755 367889999999999 99999999997653
No 24
>PTZ00183 centrin; Provisional
Probab=96.22 E-value=0.012 Score=53.94 Aligned_cols=58 Identities=21% Similarity=0.262 Sum_probs=50.0
Q ss_pred HHHHHHHHHhccCCCccccHhHHhhc-------CCHHHHHHHHHhccccCCCCcccHHHHHHHHHH
Q 008473 379 SAANYIFKNVADTGCDYIGKEQLYRF-------LIAEEVSLLLNQFEGAAKTEKIQELEFKKWVLK 437 (564)
Q Consensus 379 alAr~IF~s~~~~g~~~I~~eDl~~f-------l~~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~ 437 (564)
...+.+|+.++.+++++|+.+||..+ +++++++.+|..||.+ ++|.|+.+||...+..
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~-~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRN-GDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC-CCCcCcHHHHHHHHhc
Confidence 45688999999999999999999876 4578899999999999 9999999999876643
No 25
>PLN02964 phosphatidylserine decarboxylase
Probab=96.20 E-value=0.0071 Score=69.35 Aligned_cols=59 Identities=12% Similarity=0.028 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhccCCCccccHhHHhhcC-------CHHHHHHHHHhccccCCCCcccHHHHHHHHHH
Q 008473 378 KSAANYIFKNVADTGCDYIGKEQLYRFL-------IAEEVSLLLNQFEGAAKTEKIQELEFKKWVLK 437 (564)
Q Consensus 378 kalAr~IF~s~~~~g~~~I~~eDl~~fl-------~~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~ 437 (564)
...++++|..++.+|++.|+++||..++ ++||++++|+.||.| ++|.||.+||+..+..
T Consensus 178 ~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkD-gdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 178 RSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLN-GDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCC-CCCcCCHHHHHHHHHh
Confidence 4579999999999999999999998755 368899999999999 9999999999998877
No 26
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.13 E-value=0.017 Score=49.81 Aligned_cols=61 Identities=16% Similarity=0.266 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhcc-CC-CccccHhHHhhcC------------CHHHHHHHHHhccccCCCCcccHHHHHHHHHH
Q 008473 376 EAKSAANYIFKNVAD-TG-CDYIGKEQLYRFL------------IAEEVSLLLNQFEGAAKTEKIQELEFKKWVLK 437 (564)
Q Consensus 376 eAkalAr~IF~s~~~-~g-~~~I~~eDl~~fl------------~~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~ 437 (564)
.|..--+.+|..++. +| +++|+.+|+..++ ++++++..|..+|.+ ++|.|+.+||...+..
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~-~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQN-RDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCC-CCCcCcHHHHHHHHHH
Confidence 355667889999997 87 6999999998743 357899999999999 9999999999876654
No 27
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.06 E-value=0.011 Score=64.23 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=55.5
Q ss_pred cCCHHHHHHHHHHHHHHhccCCCccccHhHHhhcCCHHHHHHHHHhccccCCCCcccHHHHHHHHHHHHH
Q 008473 371 IKSEFEAKSAANYIFKNVADTGCDYIGKEQLYRFLIAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYN 440 (564)
Q Consensus 371 i~se~eAkalAr~IF~s~~~~g~~~I~~eDl~~fl~~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~~ 440 (564)
+++....+..++.+|+.++.+|+++|+.+||.. ++..|..||.| ++|.|+.+||...+...|+
T Consensus 326 ~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~------~~~~F~~~D~d-~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 326 LEGGEAFTHAAQEIFRLYDLDGDGFITREEWLG------SDAVFDALDLN-HDGKITPEEMRAGLGAALR 388 (391)
T ss_pred hhccChhhHHHHHHHHHhCCCCCCcCcHHHHHH------HHHHHHHhCCC-CCCCCcHHHHHHHHHHHHH
Confidence 444445678999999999999999999999953 68899999999 9999999999999999885
No 28
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=96.06 E-value=0.009 Score=57.17 Aligned_cols=58 Identities=22% Similarity=0.311 Sum_probs=51.1
Q ss_pred HHHHHHhccCCCccccHhHHhhcCC--------HHHHHHHHHhccccCCCCcccHHHHHHHHHHHHH
Q 008473 382 NYIFKNVADTGCDYIGKEQLYRFLI--------AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYN 440 (564)
Q Consensus 382 r~IF~s~~~~g~~~I~~eDl~~fl~--------~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~~ 440 (564)
.++-.-++++|.+.|+++||.+.++ .||+..+|.+||-| ++|+||..+++....+..-
T Consensus 72 ~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D-~~Gkis~~~lkrvakeLge 137 (172)
T KOG0028|consen 72 LKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDD-KTGKISQRNLKRVAKELGE 137 (172)
T ss_pred HHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHccccc-CCCCcCHHHHHHHHHHhCc
Confidence 4566778889999999999999864 69999999999999 9999999999998877763
No 29
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=96.05 E-value=0.012 Score=45.18 Aligned_cols=44 Identities=27% Similarity=0.292 Sum_probs=37.3
Q ss_pred CccccHhHHhhc--------CCHHHHHHHHHhccccCCCCcccHHHHHHHHHH
Q 008473 393 CDYIGKEQLYRF--------LIAEEVSLLLNQFEGAAKTEKIQELEFKKWVLK 437 (564)
Q Consensus 393 ~~~I~~eDl~~f--------l~~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~ 437 (564)
++.|+.++|..+ +++++++.+|..||.+ ++|.|+.+||+..+.+
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~-~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTD-GDGYISFDEFISMMQR 53 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTS-SSSSEEHHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccC-CCCCCCHHHHHHHHHh
Confidence 467888888763 5688999999999999 9999999999987754
No 30
>PTZ00184 calmodulin; Provisional
Probab=95.98 E-value=0.014 Score=52.60 Aligned_cols=59 Identities=14% Similarity=0.229 Sum_probs=51.1
Q ss_pred HHHHHHHHHhccCCCccccHhHHhhcCC--------HHHHHHHHHhccccCCCCcccHHHHHHHHHHH
Q 008473 379 SAANYIFKNVADTGCDYIGKEQLYRFLI--------AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKV 438 (564)
Q Consensus 379 alAr~IF~s~~~~g~~~I~~eDl~~fl~--------~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i 438 (564)
...+++|..++.++++.|++++|..++. ++.++.+|..||.+ ++|.|+++|+...+..+
T Consensus 47 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~-~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 47 AELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRD-GNGFISAAELRHVMTNL 113 (149)
T ss_pred HHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCC-CCCeEeHHHHHHHHHHH
Confidence 4678999999999999999999997553 35789999999999 99999999999888764
No 31
>PTZ00184 calmodulin; Provisional
Probab=95.85 E-value=0.02 Score=51.57 Aligned_cols=57 Identities=21% Similarity=0.304 Sum_probs=50.5
Q ss_pred HHHHHHHHHhccCCCccccHhHHhhcC-------CHHHHHHHHHhccccCCCCcccHHHHHHHHH
Q 008473 379 SAANYIFKNVADTGCDYIGKEQLYRFL-------IAEEVSLLLNQFEGAAKTEKIQELEFKKWVL 436 (564)
Q Consensus 379 alAr~IF~s~~~~g~~~I~~eDl~~fl-------~~eeA~~aF~lFD~d~~nG~IS~~El~~~v~ 436 (564)
..++.+|+.++.+|+++|+.+|+..++ +.++++.+|..+|.+ ++|.|+.+||...+.
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVD-GDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCC-CCCcCcHHHHHHHHh
Confidence 457899999999999999999998755 578899999999999 999999999987654
No 32
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=95.82 E-value=0.03 Score=48.09 Aligned_cols=62 Identities=15% Similarity=0.196 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhccCC--CccccHhHHhhcCC------------HHHHHHHHHhccccCCCCcccHHHHHHHHHHHH
Q 008473 377 AKSAANYIFKNVADTG--CDYIGKEQLYRFLI------------AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (564)
Q Consensus 377 AkalAr~IF~s~~~~g--~~~I~~eDl~~fl~------------~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~ 439 (564)
|-.-.-++|+..+..+ +++|+.+||...|. +++++..|..+|.+ ++|.|+.+||...+....
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d-~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTN-QDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCC-CCCcCcHHHHHHHHHHHH
Confidence 4556678999999753 67999999998663 67899999999999 999999999998887664
No 33
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=95.69 E-value=0.032 Score=48.16 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhc-cCCCc-cccHhHHhhcCC------------HHHHHHHHHhccccCCCCcccHHHHHHHHHHHH
Q 008473 377 AKSAANYIFKNVA-DTGCD-YIGKEQLYRFLI------------AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (564)
Q Consensus 377 AkalAr~IF~s~~-~~g~~-~I~~eDl~~fl~------------~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~ 439 (564)
|-.--+.+|+.++ ++|++ +|+.++|...|. ++++++.++-.|.+ ++|.|+.+||...+..+-
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n-~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSD-GDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCC-CCCcCcHHHHHHHHHHHH
Confidence 5566788999998 78999 599999876543 47799999999999 999999999988876654
No 34
>PTZ00183 centrin; Provisional
Probab=95.67 E-value=0.024 Score=51.89 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=51.9
Q ss_pred HHHHHHHHHhccCCCccccHhHHhhcCC--------HHHHHHHHHhccccCCCCcccHHHHHHHHHHHH
Q 008473 379 SAANYIFKNVADTGCDYIGKEQLYRFLI--------AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (564)
Q Consensus 379 alAr~IF~s~~~~g~~~I~~eDl~~fl~--------~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~ 439 (564)
.....+|..++.++++.|++++|...+. +++.+++|+.+|.+ ++|.|+.+||...+....
T Consensus 53 ~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~-~~G~i~~~e~~~~l~~~~ 120 (158)
T PTZ00183 53 EEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDD-KTGKISLKNLKRVAKELG 120 (158)
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCC-CCCcCcHHHHHHHHHHhC
Confidence 4577999999999999999999987542 56789999999999 999999999999987653
No 35
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=95.57 E-value=0.033 Score=50.68 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhccCCCccccHhHHhhc-CC--HHHHHHHHHhccccCCCCcccHHHHHHHH
Q 008473 376 EAKSAANYIFKNVADTGCDYIGKEQLYRF-LI--AEEVSLLLNQFEGAAKTEKIQELEFKKWV 435 (564)
Q Consensus 376 eAkalAr~IF~s~~~~g~~~I~~eDl~~f-l~--~eeA~~aF~lFD~d~~nG~IS~~El~~~v 435 (564)
.-+.-++..|..++.+++++|+.+||..+ +. ++.++..|..+|.+ ++|.||.+|+...+
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~l~~~e~~~~~f~~~~D~n-~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIRLDPNEHCIKPFFESCDLD-KDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHHccchHHHHHHHHHHHCCC-CCCCCCHHHHHHHH
Confidence 34577899999999999999999999986 33 46678999999999 99999999999887
No 36
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=95.05 E-value=0.033 Score=53.51 Aligned_cols=57 Identities=30% Similarity=0.354 Sum_probs=50.9
Q ss_pred HHHHHHHHHhccCCCccccHhHHhhcCC-------HHHHHHHHHhccccCCCCcccHHHHHHHHH
Q 008473 379 SAANYIFKNVADTGCDYIGKEQLYRFLI-------AEEVSLLLNQFEGAAKTEKIQELEFKKWVL 436 (564)
Q Consensus 379 alAr~IF~s~~~~g~~~I~~eDl~~fl~-------~eeA~~aF~lFD~d~~nG~IS~~El~~~v~ 436 (564)
.=-+.-|+-|+.+++++|..+++.++++ +||+++.+..+|.| ++|.|+.++|+..+.
T Consensus 92 Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d-~dG~i~~~eF~~~~~ 155 (160)
T COG5126 92 EELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDED-GDGEIDYEEFKKLIK 155 (160)
T ss_pred HHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCC-CCceEeHHHHHHHHh
Confidence 4456778999999999999999999874 79999999999999 999999999998764
No 37
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=94.95 E-value=0.026 Score=38.98 Aligned_cols=28 Identities=14% Similarity=0.121 Sum_probs=23.9
Q ss_pred HHHHHHHhccccCCCCcccHHHHHHHHHH
Q 008473 409 EVSLLLNQFEGAAKTEKIQELEFKKWVLK 437 (564)
Q Consensus 409 eA~~aF~lFD~d~~nG~IS~~El~~~v~~ 437 (564)
+.+.+|+.||.| ++|.|+.+||...+.+
T Consensus 1 ~l~~~F~~~D~d-~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 1 RLREAFKMFDKD-GDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHHH-TT-SSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCC-CCCcCcHHHHHHHHHH
Confidence 457899999999 9999999999998763
No 38
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=94.76 E-value=0.057 Score=50.48 Aligned_cols=65 Identities=22% Similarity=0.190 Sum_probs=56.6
Q ss_pred HHHHHHHHHhccCCCccccHhHHhhcC-------CHHHHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhhh
Q 008473 379 SAANYIFKNVADTGCDYIGKEQLYRFL-------IAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYNERKA 444 (564)
Q Consensus 379 alAr~IF~s~~~~g~~~I~~eDl~~fl-------~~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~~ERk~ 444 (564)
.--+.+|.-|+.+|+++|+.++|..++ ++++....++-+|.| ++|.|+.+||...+.+...+...
T Consensus 8 ~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~d-g~g~I~~~eF~~l~~~~~~~~~~ 79 (151)
T KOG0027|consen 8 LELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLD-GDGTIDFEEFLDLMEKLGEEKTD 79 (151)
T ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC-CCCeEcHHHHHHHHHhhhccccc
Confidence 446789999999999999999888755 378999999999999 99999999999999888866554
No 39
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=94.12 E-value=0.049 Score=36.30 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.8
Q ss_pred HHHHHhccccCCCCcccHHHHHHH
Q 008473 411 SLLLNQFEGAAKTEKIQELEFKKW 434 (564)
Q Consensus 411 ~~aF~lFD~d~~nG~IS~~El~~~ 434 (564)
+.+|..+|.| ++|.||.+||...
T Consensus 2 ~~~F~~~D~d-~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTD-GDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTT-SSSEEEHHHHHHH
T ss_pred HHHHHHHcCC-CCCcCCHHHHHHH
Confidence 5689999999 9999999999874
No 40
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=92.21 E-value=0.22 Score=49.00 Aligned_cols=59 Identities=24% Similarity=0.247 Sum_probs=48.1
Q ss_pred HHHHHHHHHhccCCCccccHhHHhhcC----C------H----HHHHHHHHhccccCCCCcccHHHHHHHHHHH
Q 008473 379 SAANYIFKNVADTGCDYIGKEQLYRFL----I------A----EEVSLLLNQFEGAAKTEKIQELEFKKWVLKV 438 (564)
Q Consensus 379 alAr~IF~s~~~~g~~~I~~eDl~~fl----~------~----eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i 438 (564)
.-.+..|+-++..++++|+.+|+...+ + + +-++..|.-+|.| ++|.||.+|+++.+.+.
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d-~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTD-GDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCC-CCCcCcHHHHHHHHHcC
Confidence 355667777788999999999998754 2 1 3378999999999 99999999999987654
No 41
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=92.03 E-value=0.25 Score=39.13 Aligned_cols=31 Identities=10% Similarity=0.191 Sum_probs=28.1
Q ss_pred HHHHHHhccccCCCCcccHHHHHHHHHHHHHH
Q 008473 410 VSLLLNQFEGAAKTEKIQELEFKKWVLKVYNE 441 (564)
Q Consensus 410 A~~aF~lFD~d~~nG~IS~~El~~~v~~i~~E 441 (564)
.+++|..||.| ++|.|+.+|+..++......
T Consensus 2 l~~~F~~~D~d-~~G~i~~~el~~~~~~~~~~ 32 (66)
T PF13499_consen 2 LKEAFKKFDKD-GDGYISKEELRRALKHLGRD 32 (66)
T ss_dssp HHHHHHHHSTT-SSSEEEHHHHHHHHHHTTSH
T ss_pred HHHHHHHHcCC-ccCCCCHHHHHHHHHHhccc
Confidence 57899999999 99999999999999988743
No 42
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=91.20 E-value=0.2 Score=47.54 Aligned_cols=61 Identities=8% Similarity=0.099 Sum_probs=52.8
Q ss_pred HHHHHHHHHhccCCCccccHhHHhhcCC--------HHHHHHHHHhccccCCCCcccHHHHHHHHHHHHH
Q 008473 379 SAANYIFKNVADTGCDYIGKEQLYRFLI--------AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYN 440 (564)
Q Consensus 379 alAr~IF~s~~~~g~~~I~~eDl~~fl~--------~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~~ 440 (564)
-.-+||-.-|..+|++.++++||+.-++ +-+|..||+++|-| +++-|-.+++...+...-+
T Consensus 71 pfk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd-~D~~i~~~DL~~~l~~lTr 139 (189)
T KOG0038|consen 71 PFKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFD-GDEFIGHDDLEKTLTSLTR 139 (189)
T ss_pred hHHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecC-CCCcccHHHHHHHHHHHhh
Confidence 4678999999999999999999998554 34678899999999 9999999999999887763
No 43
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=90.68 E-value=1.6 Score=43.96 Aligned_cols=66 Identities=12% Similarity=0.162 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhccCCCccccHhHHhhcC-------CHHHHHHHHHhccccCCCCcccHHHHHHHHHHHHHH
Q 008473 375 FEAKSAANYIFKNVADTGCDYIGKEQLYRFL-------IAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYNE 441 (564)
Q Consensus 375 ~eAkalAr~IF~s~~~~g~~~I~~eDl~~fl-------~~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~~E 441 (564)
|..-+-=|.+|+.+++++++.|+..+|...| +++=.+..++-||.- ++|+|..++++..|+...+-
T Consensus 120 w~~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~-~~g~i~FD~FI~ccv~L~~l 192 (221)
T KOG0037|consen 120 WKYINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRF-GGGRIDFDDFIQCCVVLQRL 192 (221)
T ss_pred HHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccc-cCCceeHHHHHHHHHHHHHH
Confidence 4444556889999999999999999998755 366678899999976 79999999999999887654
No 44
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=90.58 E-value=0.28 Score=30.83 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=23.6
Q ss_pred HHHHHHHhccccCCCCcccHHHHHHHHHH
Q 008473 409 EVSLLLNQFEGAAKTEKIQELEFKKWVLK 437 (564)
Q Consensus 409 eA~~aF~lFD~d~~nG~IS~~El~~~v~~ 437 (564)
|.+++|+.+|.+ ++|.|+.+|+...+..
T Consensus 1 ~~~~~f~~~d~~-~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 1 ELKEAFRLFDKD-GDGKIDFEEFKDLLKA 28 (29)
T ss_pred CHHHHHHHHCCC-CCCcEeHHHHHHHHHh
Confidence 356789999999 9999999999887654
No 45
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=89.75 E-value=0.62 Score=39.90 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=26.1
Q ss_pred HHHHHHHHhcc-ccCCCC-cccHHHHHHHHHH
Q 008473 408 EEVSLLLNQFE-GAAKTE-KIQELEFKKWVLK 437 (564)
Q Consensus 408 eeA~~aF~lFD-~d~~nG-~IS~~El~~~v~~ 437 (564)
++..++|++|| .+ ++| .|+.+|++..+..
T Consensus 9 ~~l~~~F~~fDd~d-g~G~~Is~~El~~~l~~ 39 (92)
T cd05025 9 ETLINVFHAHSGKE-GDKYKLSKKELKDLLQT 39 (92)
T ss_pred HHHHHHHHHHhccc-CCCCeECHHHHHHHHHH
Confidence 67899999997 99 999 5999999999965
No 46
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=89.56 E-value=0.77 Score=41.09 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=51.0
Q ss_pred HHHHHHHHHhccCCCccccHhHHhhcC-----CHHHHHHHHHhccccCCCCcccHHHHHHHHHHHHHH
Q 008473 379 SAANYIFKNVADTGCDYIGKEQLYRFL-----IAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYNE 441 (564)
Q Consensus 379 alAr~IF~s~~~~g~~~I~~eDl~~fl-----~~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~~E 441 (564)
+-=+.+|..++ +++++|+-++...|| +.+....++.+=|.| .+|.++++||.-++.=+++.
T Consensus 10 ~~y~~~F~~l~-~~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~-~dG~L~~~EF~iAm~Li~~~ 75 (104)
T PF12763_consen 10 QKYDQIFQSLD-PQDGKISGDQAREFFMKSGLPRDVLAQIWNLADID-NDGKLDFEEFAIAMHLINRK 75 (104)
T ss_dssp HHHHHHHHCTS-SSTTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SS-SSSEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCC-CCCcCCHHHHHHHHHHHHHH
Confidence 34467899887 678999999999876 478999999999999 99999999999988777643
No 47
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=89.00 E-value=0.69 Score=40.09 Aligned_cols=31 Identities=10% Similarity=0.259 Sum_probs=25.9
Q ss_pred HHHHHHHHhcc-ccCCCC-cccHHHHHHHHHHHH
Q 008473 408 EEVSLLLNQFE-GAAKTE-KIQELEFKKWVLKVY 439 (564)
Q Consensus 408 eeA~~aF~lFD-~d~~nG-~IS~~El~~~v~~i~ 439 (564)
+++.++|+.|| .| ++| .||.+||+..+.+..
T Consensus 10 ~~~~~~F~~~dd~d-gdg~~Is~~EL~~ll~~~~ 42 (93)
T cd05026 10 DTLIRIFHNYSGKE-GDRYKLSKGELKELLQREL 42 (93)
T ss_pred HHHHHHHHHHHccC-CCCCEECHHHHHHHHHHHh
Confidence 46788999999 67 998 599999999887743
No 48
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=87.29 E-value=1.1 Score=37.89 Aligned_cols=29 Identities=14% Similarity=0.387 Sum_probs=26.2
Q ss_pred HHHHHHHHhccc--cCCCCcccHHHHHHHHHH
Q 008473 408 EEVSLLLNQFEG--AAKTEKIQELEFKKWVLK 437 (564)
Q Consensus 408 eeA~~aF~lFD~--d~~nG~IS~~El~~~v~~ 437 (564)
+++..+|..||. + ++|.|+.+|+...+..
T Consensus 8 ~~l~~~F~~~D~~~~-~~G~Is~~el~~~l~~ 38 (88)
T cd00213 8 ETIIDVFHKYSGKEG-DKDTLSKKELKELLET 38 (88)
T ss_pred HHHHHHHHHHhhccC-CCCcCcHHHHHHHHHH
Confidence 567889999999 8 9999999999998875
No 49
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.04 E-value=0.85 Score=48.26 Aligned_cols=62 Identities=21% Similarity=0.183 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhccCCCccccHhHHhhcCCHHH--------HHHHHHhccccCCCCcccHHHHHHHHHHHH
Q 008473 377 AKSAANYIFKNVADTGCDYIGKEQLYRFLIAEE--------VSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (564)
Q Consensus 377 AkalAr~IF~s~~~~g~~~I~~eDl~~fl~~ee--------A~~aF~lFD~d~~nG~IS~~El~~~v~~i~ 439 (564)
--+-=++-|+.-+.+|++.++.|+|..|+.+|+ +.+.+.=.|.+ ++|.|+.+|++.-+.+-.
T Consensus 161 m~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn-~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 161 MIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKN-GDGKISLEEFIGDLYSHE 230 (325)
T ss_pred HHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccC-CCCceeHHHHHhHHhhcc
Confidence 334456789999999999999999999999776 46677778999 999999999987766655
No 50
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=86.06 E-value=1.2 Score=48.55 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhccCCCccccHhHHhhcCCH--HHHHHHHHhccccCCCCcccHHHHHHHHHHHHH
Q 008473 378 KSAANYIFKNVADTGCDYIGKEQLYRFLIA--EEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYN 440 (564)
Q Consensus 378 kalAr~IF~s~~~~g~~~I~~eDl~~fl~~--eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~~ 440 (564)
..+|+.+|...+.+.++.++++||.+|+.+ .+..+.|.-.|.+ .||+|..+|+.+.+.++.-
T Consensus 50 ~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~iD~~-hdG~i~~~Ei~~~l~~~gi 113 (463)
T KOG0036|consen 50 YEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQSIDLE-HDGKIDPNEIWRYLKDLGI 113 (463)
T ss_pred hHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhhhccc-cCCccCHHHHHHHHHHhCC
Confidence 367888888888888888899999888874 4456788888888 8899988888888777653
No 51
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=85.81 E-value=1.4 Score=37.89 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=25.4
Q ss_pred HHHHHHHHhccc-cCC-CCcccHHHHHHHHHH
Q 008473 408 EEVSLLLNQFEG-AAK-TEKIQELEFKKWVLK 437 (564)
Q Consensus 408 eeA~~aF~lFD~-d~~-nG~IS~~El~~~v~~ 437 (564)
.+..++|..||. | + +|.|+.+|++..+..
T Consensus 8 ~~l~~~F~~~D~~d-g~dG~Is~~El~~~l~~ 38 (94)
T cd05031 8 ESLILTFHRYAGKD-GDKNTLSRKELKKLMEK 38 (94)
T ss_pred HHHHHHHHHHhccC-CCCCeECHHHHHHHHHH
Confidence 567889999997 8 8 699999999998875
No 52
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=84.00 E-value=0.76 Score=31.69 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=22.4
Q ss_pred HHHHHHHhccCCCccccHhHHhhcC
Q 008473 381 ANYIFKNVADTGCDYIGKEQLYRFL 405 (564)
Q Consensus 381 Ar~IF~s~~~~g~~~I~~eDl~~fl 405 (564)
.+.+|+.++++|+++|++++|...+
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~ 26 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMM 26 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 4689999999999999999998765
No 53
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=83.82 E-value=3.9 Score=35.94 Aligned_cols=60 Identities=12% Similarity=0.275 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhccCCCccccHhHHhhcCC------------HHHHHHHHHhccccCCCCcccHHHHHHHHHHHH
Q 008473 378 KSAANYIFKNVADTGCDYIGKEQLYRFLI------------AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (564)
Q Consensus 378 kalAr~IF~s~~~~g~~~I~~eDl~~fl~------------~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~ 439 (564)
-..--.+|+..+. +++.|+..+|...+. ++.++++|..+|.+ ++|.|+.+|+...|..+-
T Consensus 7 i~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n-~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 7 MEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDC-RDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCC-CCCcCcHHHHHHHHHHHH
Confidence 3444568888883 355899888886552 56789999999999 999999999998887664
No 54
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=83.44 E-value=1.8 Score=37.51 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=27.5
Q ss_pred HHHHHHHHhccc-cCCCCcccHHHHHHHHHH-HH
Q 008473 408 EEVSLLLNQFEG-AAKTEKIQELEFKKWVLK-VY 439 (564)
Q Consensus 408 eeA~~aF~lFD~-d~~nG~IS~~El~~~v~~-i~ 439 (564)
.....+|+.||+ + ++|.|+.+||+..+.+ ..
T Consensus 8 ~~l~~~F~~fd~~~-~~g~i~~~ELk~ll~~elg 40 (89)
T cd05022 8 ETLVSNFHKASVKG-GKESLTASEFQELLTQQLP 40 (89)
T ss_pred HHHHHHHHHHhCCC-CCCeECHHHHHHHHHHHhh
Confidence 456889999999 9 9999999999999988 54
No 55
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=82.89 E-value=1.4 Score=36.83 Aligned_cols=54 Identities=22% Similarity=0.476 Sum_probs=42.8
Q ss_pred HHHHHHhccCCCccccHhHHhhcCC---------HHHHHHHHHhccccC---CCCcccHHHHHHHHH
Q 008473 382 NYIFKNVADTGCDYIGKEQLYRFLI---------AEEVSLLLNQFEGAA---KTEKIQELEFKKWVL 436 (564)
Q Consensus 382 r~IF~s~~~~g~~~I~~eDl~~fl~---------~eeA~~aF~lFD~d~---~nG~IS~~El~~~v~ 436 (564)
+.||.+++. +..+++.++|.+||. .++++..+.-|+.+. ..+.+|.++|...+.
T Consensus 3 ~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 3 EEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred HHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 578999987 888999999999994 567778888886651 367788888887764
No 56
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=82.84 E-value=1 Score=35.17 Aligned_cols=27 Identities=11% Similarity=0.113 Sum_probs=23.9
Q ss_pred HHHHHhccccCCCCcccHHHHHHHHHHH
Q 008473 411 SLLLNQFEGAAKTEKIQELEFKKWVLKV 438 (564)
Q Consensus 411 ~~aF~lFD~d~~nG~IS~~El~~~v~~i 438 (564)
+++|..+|.+ ++|.|+.+|+...+.+.
T Consensus 2 ~~~F~~~D~~-~~G~i~~~el~~~l~~~ 28 (67)
T cd00052 2 DQIFRSLDPD-GDGLISGDEARPFLGKS 28 (67)
T ss_pred hHHHHHhCCC-CCCcCcHHHHHHHHHHc
Confidence 4689999999 99999999999988654
No 57
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=82.24 E-value=0.27 Score=53.75 Aligned_cols=52 Identities=15% Similarity=0.214 Sum_probs=39.4
Q ss_pred HHHHHHhccCCCccccHhHHhhcC---C--HHHHHHHHHhccccCCCCcccHHHHHHHHH
Q 008473 382 NYIFKNVADTGCDYIGKEQLYRFL---I--AEEVSLLLNQFEGAAKTEKIQELEFKKWVL 436 (564)
Q Consensus 382 r~IF~s~~~~g~~~I~~eDl~~fl---~--~eeA~~aF~lFD~d~~nG~IS~~El~~~v~ 436 (564)
..||+.+. .++-|++.|..-++ + +..-+-||+|||.| +||.|+++||.....
T Consensus 204 ~siF~~lg--~~GLIsfSdYiFLlTlLS~p~~~F~IAFKMFD~d-gnG~IdkeEF~~v~~ 260 (489)
T KOG2643|consen 204 DSIFYKLG--ESGLISFSDYIFLLTLLSIPERNFRIAFKMFDLD-GNGEIDKEEFETVQQ 260 (489)
T ss_pred CeeEEEcC--CCCeeeHHHHHHHHHHHccCcccceeeeeeeecC-CCCcccHHHHHHHHH
Confidence 34666654 46678888877644 3 34458899999999 999999999988763
No 58
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=81.80 E-value=2.7 Score=36.26 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=25.6
Q ss_pred HHHHHHHHhcc-ccCCCC-cccHHHHHHHHHH
Q 008473 408 EEVSLLLNQFE-GAAKTE-KIQELEFKKWVLK 437 (564)
Q Consensus 408 eeA~~aF~lFD-~d~~nG-~IS~~El~~~v~~ 437 (564)
.+..++|+.|| .| ++| .|+.+|++..+..
T Consensus 8 ~~l~~aF~~fD~~d-gdG~~I~~~eL~~ll~~ 38 (88)
T cd05027 8 VALIDVFHQYSGRE-GDKHKLKKSELKELINN 38 (88)
T ss_pred HHHHHHHHHhcccC-CCcCEECHHHHHHHHHH
Confidence 45689999998 78 999 5999999999977
No 59
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=80.95 E-value=1.8 Score=39.52 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=26.0
Q ss_pred CHHHHHHHHHhccccCCCCcccHHHHHHHH
Q 008473 406 IAEEVSLLLNQFEGAAKTEKIQELEFKKWV 435 (564)
Q Consensus 406 ~~eeA~~aF~lFD~d~~nG~IS~~El~~~v 435 (564)
..+++.|+|..+|.| ++|.||++|+....
T Consensus 46 ~~~~l~w~F~~lD~d-~DG~Ls~~EL~~~~ 74 (116)
T cd00252 46 CKDPVGWMFNQLDGN-YDGKLSHHELAPIR 74 (116)
T ss_pred HHHHHHHHHHHHCCC-CCCcCCHHHHHHHH
Confidence 468899999999999 99999999999653
No 60
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=80.90 E-value=1.3 Score=38.15 Aligned_cols=29 Identities=10% Similarity=0.213 Sum_probs=25.7
Q ss_pred HHHHHHHHhccccCCCCcccHHHHHHHHHH
Q 008473 408 EEVSLLLNQFEGAAKTEKIQELEFKKWVLK 437 (564)
Q Consensus 408 eeA~~aF~lFD~d~~nG~IS~~El~~~v~~ 437 (564)
++..++|..||.+ ++|.|+.+|+...+..
T Consensus 10 ~~l~~~F~~~D~d-~~G~Is~~el~~~l~~ 38 (96)
T smart00027 10 AKYEQIFRSLDKN-QDGTVTGAQAKPILLK 38 (96)
T ss_pred HHHHHHHHHhCCC-CCCeEeHHHHHHHHHH
Confidence 4568899999999 9999999999998765
No 61
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=80.74 E-value=4.6 Score=40.15 Aligned_cols=61 Identities=16% Similarity=0.218 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhccCC-CccccHhHHhh----cCC----HHHHHHHHHhccccCCCCcccHHHHHHHHHHHH
Q 008473 378 KSAANYIFKNVADTG-CDYIGKEQLYR----FLI----AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (564)
Q Consensus 378 kalAr~IF~s~~~~g-~~~I~~eDl~~----fl~----~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~ 439 (564)
++--+.+|++|..+. .+.++.++|.. +++ ..-++.+|+.||.+ +||.|+.+|++..+.-.-
T Consensus 25 ~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~-~dg~i~F~Efi~als~~~ 94 (193)
T KOG0044|consen 25 KKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKN-KDGTIDFLEFICALSLTS 94 (193)
T ss_pred HHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhccc-CCCCcCHHHHHHHHHHHc
Confidence 366778899998755 67788888876 333 45689999999999 999999999776655443
No 62
>PLN02964 phosphatidylserine decarboxylase
Probab=78.32 E-value=3.3 Score=48.06 Aligned_cols=57 Identities=11% Similarity=0.087 Sum_probs=45.7
Q ss_pred HHHHHHHhccCCCccccHhHHhhcCC-----HHH---HHHHHHhccccCCCCcccHHHHHHHHHHHH
Q 008473 381 ANYIFKNVADTGCDYIGKEQLYRFLI-----AEE---VSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (564)
Q Consensus 381 Ar~IF~s~~~~g~~~I~~eDl~~fl~-----~ee---A~~aF~lFD~d~~nG~IS~~El~~~v~~i~ 439 (564)
.++.|..+++++++.+ +..+.+-++ +++ ++++|+.+|.| ++|.|+.+||...+....
T Consensus 145 lkeaF~lfD~dgdG~i-Lg~ilrslG~~~pte~e~~fi~~mf~~~D~D-gdG~IdfdEFl~lL~~lg 209 (644)
T PLN02964 145 ACESFDLLDPSSSNKV-VGSIFVSCSIEDPVETERSFARRILAIVDYD-EDGQLSFSEFSDLIKAFG 209 (644)
T ss_pred HHHHHHHHCCCCCCcC-HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCC-CCCeEcHHHHHHHHHHhc
Confidence 4667999999998877 666666332 344 79999999999 999999999999887643
No 63
>PRK11281 hypothetical protein; Provisional
Probab=76.92 E-value=20 Score=44.33 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHhhhhhccccccchhhHHhhHhHHhHHHHHHHHHHHHHHHHHH
Q 008473 139 KLWKWCVFLLVIVSCRLVTKSLINALLFLIERNSSLRQRFMYYVHGLRIIIRVFVWLSLFLLVRIFL 205 (564)
Q Consensus 139 ~lw~w~v~~lv~~~g~lva~~~~~~~~fli~~~~~~~kk~~y~v~~L~~~v~~~~W~~~~l~~~~~l 205 (564)
.++.....+++++.++++++++++++.-+............| .+++-+..++|++.+++++..+
T Consensus 835 tl~~Ll~allIl~i~~~l~r~l~~ll~~~~~~rl~l~~~~~~---~i~~li~y~I~~i~iliaL~~l 898 (1113)
T PRK11281 835 TLGNLLFALIILVVTYVLVRNLPGLLEVLVLSRLNLRQGTSY---AITTLLTYIIIAVGAVTAFSTL 898 (1113)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchHHH---HHHHHHHHHHHHHHHHHHHHHc
Confidence 345555556777788999999998776554333233333333 3456677778887777777654
No 64
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=76.82 E-value=2.4 Score=31.21 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=25.5
Q ss_pred HHHHHHhccccCCCCcccHHHHHHHHHHHH
Q 008473 410 VSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (564)
Q Consensus 410 A~~aF~lFD~d~~nG~IS~~El~~~v~~i~ 439 (564)
+..+|..+|.+ ++|.|+.+|+...+...+
T Consensus 2 ~~~~f~~~d~~-~~g~l~~~e~~~~l~~~~ 30 (63)
T cd00051 2 LREAFRLFDKD-GDGTISADELKAALKSLG 30 (63)
T ss_pred HHHHHHHhCCC-CCCcCcHHHHHHHHHHhC
Confidence 56789999999 999999999999887654
No 65
>PF14658 EF-hand_9: EF-hand domain
Probab=76.41 E-value=3.5 Score=34.14 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=44.8
Q ss_pred HHHHHhccCCCccccHhHHhhcCC--------HHHHHHHHHhccccCCC-CcccHHHHHHHHHH
Q 008473 383 YIFKNVADTGCDYIGKEQLYRFLI--------AEEVSLLLNQFEGAAKT-EKIQELEFKKWVLK 437 (564)
Q Consensus 383 ~IF~s~~~~g~~~I~~eDl~~fl~--------~eeA~~aF~lFD~d~~n-G~IS~~El~~~v~~ 437 (564)
..|.-|+.++.+.+...++..+|. +++.+...+.+|++ +. |.|+++.|...+.+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~-g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPE-GRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCC-CCCceEeHHHHHHHHHH
Confidence 357778888999999888887662 67889999999999 76 99999999877654
No 66
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=76.01 E-value=1.8 Score=29.64 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=21.2
Q ss_pred HHHHHHhccCCCccccHhHHhhcCC
Q 008473 382 NYIFKNVADTGCDYIGKEQLYRFLI 406 (564)
Q Consensus 382 r~IF~s~~~~g~~~I~~eDl~~fl~ 406 (564)
+.+|+.++.+++++|+.+||..++.
T Consensus 3 ~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 3 REAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 5789999999999999999987654
No 67
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=74.50 E-value=3.4 Score=37.35 Aligned_cols=56 Identities=13% Similarity=0.122 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhccCCCccccHhHHhhcCC-----HHHHHHHHHhccccCCCCcccHHHHHH
Q 008473 377 AKSAANYIFKNVADTGCDYIGKEQLYRFLI-----AEEVSLLLNQFEGAAKTEKIQELEFKK 433 (564)
Q Consensus 377 AkalAr~IF~s~~~~g~~~I~~eDl~~fl~-----~eeA~~aF~lFD~d~~nG~IS~~El~~ 433 (564)
-+..+.-.|..++.+++++|+..++..+.. +.=++..|+.=|.| ++|.||.+|+..
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n-~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVN-KDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT--SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCC-CCCCCCHHHHcc
Confidence 457899999999999999999999887443 33367788888999 999999999863
No 68
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=74.08 E-value=4.1 Score=39.29 Aligned_cols=48 Identities=13% Similarity=0.098 Sum_probs=36.0
Q ss_pred CCCccccHhHHhhcCC--------HHHHHHHHHhccccCCCCcccHHHHHHHHHHHH
Q 008473 391 TGCDYIGKEQLYRFLI--------AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (564)
Q Consensus 391 ~g~~~I~~eDl~~fl~--------~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~ 439 (564)
++.+.|++--|+-.|+ ++....||+.||.+ +.|.|..+.|++++....
T Consensus 76 Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~-~~G~I~~d~lre~Ltt~g 131 (171)
T KOG0031|consen 76 EAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDE-GSGKIDEDYLRELLTTMG 131 (171)
T ss_pred hCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCcc-CCCccCHHHHHHHHHHhc
Confidence 4556777777766553 45568899999988 899999999998888744
No 69
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=73.29 E-value=4.6 Score=44.30 Aligned_cols=56 Identities=14% Similarity=0.272 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhccCCCccccHhHHhhcCC-------HHHHHHHHHhccccCCCCcccHHHHHHH
Q 008473 378 KSAANYIFKNVADTGCDYIGKEQLYRFLI-------AEEVSLLLNQFEGAAKTEKIQELEFKKW 434 (564)
Q Consensus 378 kalAr~IF~s~~~~g~~~I~~eDl~~fl~-------~eeA~~aF~lFD~d~~nG~IS~~El~~~ 434 (564)
+.=-.++|.+++.+.++.|..+++.+++. .|+|++.|+--|+| +++.|..+|+.+.
T Consensus 81 E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~-g~~~I~~~e~rd~ 143 (463)
T KOG0036|consen 81 ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKD-GKATIDLEEWRDH 143 (463)
T ss_pred HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccC-CCeeeccHHHHhh
Confidence 34456899999999999999999998773 79999999999999 9999999998764
No 70
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=73.17 E-value=6.9 Score=37.75 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhccCCCccccHhHHhhcC-------CHHHHHHHHHhccccCCCCcccHHHHHHHHH
Q 008473 376 EAKSAANYIFKNVADTGCDYIGKEQLYRFL-------IAEEVSLLLNQFEGAAKTEKIQELEFKKWVL 436 (564)
Q Consensus 376 eAkalAr~IF~s~~~~g~~~I~~eDl~~fl-------~~eeA~~aF~lFD~d~~nG~IS~~El~~~v~ 436 (564)
+++..-..-|+.|+.+|++.|..+.|.+.+ ++||++..|..+-.| .+|.|...+|...+.
T Consensus 98 dpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d-~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 98 DPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPID-KKGNFDYKAFTYIIT 164 (171)
T ss_pred CHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcc-cCCceeHHHHHHHHH
Confidence 345677778999999999999999998865 379999999999999 999999999988775
No 71
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=71.46 E-value=1.1e+02 Score=36.58 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=41.7
Q ss_pred hhHhHHhHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008473 181 YVHGLRIIIRVFVWLSLFLLVRIFLFRHGVKRSKETTKILNYVTRVLASSLVGAALWCLKSFS 243 (564)
Q Consensus 181 ~v~~L~~~v~~~~W~~~~l~~~~~l~~~~~~~~~~~~~~l~~v~kvL~~~~v~a~i~l~ekil 243 (564)
.+..+| |+.+++|++..+.+|..+-....-.+..-...++.+.+++..++++.+.|.+-+.+
T Consensus 426 ~l~~lr-~l~~~~~vl~ll~a~~~l~l~~~~~~~~g~~~i~~l~~i~iil~i~~v~w~l~~~~ 487 (741)
T PRK11465 426 ALKTAR-ILTVCVAVMLLLNAWGLFDFWNWLQNGAGEKTVDILIRIALILFFSAVGWTVLASL 487 (741)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhcchHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777 89999999999999986422110011112446677888888888888888775533
No 72
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=71.04 E-value=11 Score=36.61 Aligned_cols=61 Identities=23% Similarity=0.199 Sum_probs=50.2
Q ss_pred HHHHHHhccCCCccccHhHHhh---cCC----HHHHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhh
Q 008473 382 NYIFKNVADTGCDYIGKEQLYR---FLI----AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYNERK 443 (564)
Q Consensus 382 r~IF~s~~~~g~~~I~~eDl~~---fl~----~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~~ERk 443 (564)
+-.|.-|..++.++|+.++|.- .++ .+|..+...=+|.+ +.|.|+.++|...+....-||.
T Consensus 36 ~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~-~~g~i~fe~f~~~mt~k~~e~d 103 (172)
T KOG0028|consen 36 KEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKE-GSGKITFEDFRRVMTVKLGERD 103 (172)
T ss_pred HHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhc-cCceechHHHHHHHHHHHhccC
Confidence 4445566688999999999943 332 68889999999999 9999999999999998887775
No 73
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=70.10 E-value=13 Score=37.68 Aligned_cols=55 Identities=7% Similarity=0.168 Sum_probs=26.0
Q ss_pred HHHHhccCCCccccHhHHhhcCC-HHHHHHHHHhccccCCCCcccHHHHHHHHHHHH
Q 008473 384 IFKNVADTGCDYIGKEQLYRFLI-AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (564)
Q Consensus 384 IF~s~~~~g~~~I~~eDl~~fl~-~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~ 439 (564)
|-.=|+.+..+.|.++||...-. -.+=+.+|.-||.| +.|.|+..||.+++....
T Consensus 99 mI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D-~SG~I~~sEL~~Al~~~G 154 (221)
T KOG0037|consen 99 MISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYDRD-RSGTIDSSELRQALTQLG 154 (221)
T ss_pred HHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhcccC-CCCcccHHHHHHHHHHcC
Confidence 33334444444444444444221 22334455555555 555555555555555443
No 74
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=69.60 E-value=7.7 Score=37.17 Aligned_cols=57 Identities=28% Similarity=0.422 Sum_probs=43.4
Q ss_pred HHHHHHHhccCCCccccHhHHhhcC--------CHHHH----HHHHHhccccCCCCcccHHHHHHHHHHH
Q 008473 381 ANYIFKNVADTGCDYIGKEQLYRFL--------IAEEV----SLLLNQFEGAAKTEKIQELEFKKWVLKV 438 (564)
Q Consensus 381 Ar~IF~s~~~~g~~~I~~eDl~~fl--------~~eeA----~~aF~lFD~d~~nG~IS~~El~~~v~~i 438 (564)
|++-|+-.+-+++++|-.+|++.-+ ++||+ ++...--|.| ++|+++..||...+.+.
T Consensus 110 ~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~D-gDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 110 AKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLD-GDGKLSFAEFEHVILRA 178 (189)
T ss_pred hhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCC-CCCcccHHHHHHHHHhC
Confidence 4555666677899999999998643 35553 5566666899 99999999999887653
No 75
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=65.09 E-value=57 Score=40.56 Aligned_cols=95 Identities=17% Similarity=0.159 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHH--HHHhh---ccccccccccc-------------chhhHHHHHHHHHHHHHHHHhHHHHHhhhhhc
Q 008473 108 LIELAAFGCIMALL--ICSLT---VKQLQNHVIWD-------------FKLWKWCVFLLVIVSCRLVTKSLINALLFLIE 169 (564)
Q Consensus 108 ~~r~~~~v~~~~~L--l~~~~---i~~~~~~~i~~-------------~~lw~w~v~~lv~~~g~lva~~~~~~~~fli~ 169 (564)
++|-+++++.++++ +|+.. +..+.+-++|. +.++.....+++++.|+++++++++++.-.+.
T Consensus 783 L~r~~l~l~~l~~l~~iWsd~~~a~s~Ld~i~LW~~t~~~~g~~~~~~itl~~ll~AllIliv~~~l~r~l~~lle~~l~ 862 (1109)
T PRK10929 783 LVRSILTLIALLSVIVLWSEIHSAFGFLENISLWDVTSTVQGVESLQPITLGSVLIAILVFIITTQLVRNLPALLELALL 862 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeEEeeeceeccccceeeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444433 34443 34578888886 35566666678888999999999998875543
Q ss_pred cccccchhhHHhhHhHHhHHHHHHHHHHHHHHHHHH
Q 008473 170 RNSSLRQRFMYYVHGLRIIIRVFVWLSLFLLVRIFL 205 (564)
Q Consensus 170 ~~~~~~kk~~y~v~~L~~~v~~~~W~~~~l~~~~~l 205 (564)
..........|++ .+-+..++|++.+++++..+
T Consensus 863 ~~~~l~~~~~~~i---~~l~~y~I~~ig~l~~L~~l 895 (1109)
T PRK10929 863 QHLDLTPGTGYAI---TTITKYLLMLIGGLVGFSMI 895 (1109)
T ss_pred hhcCCChhHHHHH---HHHHHHHHHHHHHHHHHHHc
Confidence 3222223334443 34455666666666665554
No 76
>COG5346 Predicted membrane protein [Function unknown]
Probab=64.64 E-value=1.1e+02 Score=28.69 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhH
Q 008473 484 TQALVFITSQLVLAAFMFGNTV 505 (564)
Q Consensus 484 t~lla~~gs~~lalsF~f~~t~ 505 (564)
..-+++.++..+|++|+++.+-
T Consensus 110 la~~~~Gtv~alAlaFv~~~S~ 131 (136)
T COG5346 110 LASLAGGTVFALALAFVIGRSR 131 (136)
T ss_pred HHHHccchHHHHHHHHHHhhhh
Confidence 3345556667888888887653
No 77
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=63.56 E-value=5.2 Score=26.51 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.5
Q ss_pred HHHHHHhccCCCccccHhHHhhc
Q 008473 382 NYIFKNVADTGCDYIGKEQLYRF 404 (564)
Q Consensus 382 r~IF~s~~~~g~~~I~~eDl~~f 404 (564)
+..|+.++.++++.|+.+|+..+
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 46899999999999999999875
No 78
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=62.20 E-value=11 Score=29.78 Aligned_cols=31 Identities=13% Similarity=0.295 Sum_probs=23.7
Q ss_pred CHHHHHHHHHhccccCCCCcccHHHHHHHHHH
Q 008473 406 IAEEVSLLLNQFEGAAKTEKIQELEFKKWVLK 437 (564)
Q Consensus 406 ~~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~ 437 (564)
+++.|...|..-|.+ ++|.+..+|+...+..
T Consensus 19 ~~~yA~~LFq~~D~s-~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 19 DDEYARQLFQECDKS-QSGRLEGEEFEEFYKR 49 (51)
T ss_dssp -HHHHHHHHHHH-SS-SSSEBEHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccc-CCCCccHHHHHHHHHH
Confidence 367888888888988 8999999988876543
No 79
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=57.53 E-value=7.6 Score=29.47 Aligned_cols=27 Identities=15% Similarity=0.448 Sum_probs=24.3
Q ss_pred HHHHHHHHHhccCCCccccHhHHhhcC
Q 008473 379 SAANYIFKNVADTGCDYIGKEQLYRFL 405 (564)
Q Consensus 379 alAr~IF~s~~~~g~~~I~~eDl~~fl 405 (564)
.-++.||+.++.+++++|+++||..++
T Consensus 25 ~e~~~l~~~~D~~~~G~I~~~EF~~~~ 51 (54)
T PF13833_consen 25 EEVDRLFREFDTDGDGYISFDEFISMM 51 (54)
T ss_dssp HHHHHHHHHHTTSSSSSEEHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHH
Confidence 348999999999999999999999875
No 80
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=56.42 E-value=9.7 Score=42.40 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=48.9
Q ss_pred HHhhhhccCCHHHHHHHHHHHHHHhccCCCccccHhHHhhcCCH---------------HH-HHHHHHhccccCCCCccc
Q 008473 364 ELQMYKSIKSEFEAKSAANYIFKNVADTGCDYIGKEQLYRFLIA---------------EE-VSLLLNQFEGAAKTEKIQ 427 (564)
Q Consensus 364 ~~al~~~i~se~eAkalAr~IF~s~~~~g~~~I~~eDl~~fl~~---------------ee-A~~aF~lFD~d~~nG~IS 427 (564)
++|++. .+++ +-+++.|+.++-+|++.|+.+|+..|+.+ |+ ..+.++|.-+. ..++||
T Consensus 341 ilA~e~-k~t~----~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~-~~~kIt 414 (493)
T KOG2562|consen 341 ILAEED-KDTP----ASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPE-DENKIT 414 (493)
T ss_pred HHHhcc-CCCc----cchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcc-CCCcee
Confidence 455543 3343 67899999999999999999999877642 33 36778888777 788999
Q ss_pred HHHHHH
Q 008473 428 ELEFKK 433 (564)
Q Consensus 428 ~~El~~ 433 (564)
+++|+.
T Consensus 415 LqDlk~ 420 (493)
T KOG2562|consen 415 LQDLKG 420 (493)
T ss_pred HHHHhh
Confidence 999875
No 81
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=53.89 E-value=24 Score=35.62 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=46.1
Q ss_pred HHHHHHHHHhccCCCccccHhHHhhcCCH-------HHHHHHHHhccccCCCCcccHHHHHHHH
Q 008473 379 SAANYIFKNVADTGCDYIGKEQLYRFLIA-------EEVSLLLNQFEGAAKTEKIQELEFKKWV 435 (564)
Q Consensus 379 alAr~IF~s~~~~g~~~I~~eDl~~fl~~-------eeA~~aF~lFD~d~~nG~IS~~El~~~v 435 (564)
.-+..+|+..+.+-++||++.+|.++|.. =-.+....--|.| .+|+||..|+....
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded-~dgklSfreflLIf 161 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDED-FDGKLSFREFLLIF 161 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcc-cccchhHHHHHHHH
Confidence 46788999999999999999999998841 1246777888999 99999999987654
No 82
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=52.97 E-value=24 Score=39.48 Aligned_cols=61 Identities=8% Similarity=0.121 Sum_probs=46.8
Q ss_pred HHHHHHHHHHh----ccCCCccccHhHHhhcCC-------HHHHHHHHHhccccCCCCcccHHHHHHHHHHHH
Q 008473 378 KSAANYIFKNV----ADTGCDYIGKEQLYRFLI-------AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (564)
Q Consensus 378 kalAr~IF~s~----~~~g~~~I~~eDl~~fl~-------~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~ 439 (564)
...-.|||..+ ..-+.+-++.+||..|.- +.-++-.|+.+|.+ ++|-++..||.....+..
T Consensus 310 ~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld-~~G~Lt~~el~~fyeeq~ 381 (493)
T KOG2562|consen 310 ERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLD-GDGILTLNELRYFYEEQL 381 (493)
T ss_pred hHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeecc-CCCcccHHHHHHHHHHHH
Confidence 46788999822 222333499999999773 34578999999999 999999999988766665
No 83
>KOG1341 consensus Na+/K+ transporter [Inorganic ion transport and metabolism]
Probab=50.73 E-value=60 Score=37.79 Aligned_cols=100 Identities=14% Similarity=0.031 Sum_probs=58.8
Q ss_pred chhhHHHHHHHHHHHHHHHHhhccccccc----ccccchhhHHHHHH-HHHH--HHH-----------------------
Q 008473 105 PYVLIELAAFGCIMALLICSLTVKQLQNH----VIWDFKLWKWCVFL-LVIV--SCR----------------------- 154 (564)
Q Consensus 105 ~~~~~r~~~~v~~~~~Ll~~~~i~~~~~~----~i~~~~lw~w~v~~-lv~~--~g~----------------------- 154 (564)
+++++-|++.+-++|.....|-+.-.+.. +=.|+.=-||.+|- +.++ ||.
T Consensus 464 csil~vY~l~~nIvafV~llv~i~t~k~~~eVv~~~gisp~ww~~FTs~S~F~nlGfslt~~smvsF~kai~plil~~~f 543 (854)
T KOG1341|consen 464 CSILVVYFLGWNIVAFVTLLVFIYTAKTSREVVRSKGISPGWWAFFTSMSAFNNLGFSLTPDSMVSFNKAIFPLILMIPF 543 (854)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcccCCCCcchhhhhhHHHHHhccCcccCcccccccccchhHHHHHHHH
Confidence 68899999998888877666655322221 11233333444443 2222 121
Q ss_pred HHH--hHHHHHhhhhhcccccc------chhhHHhhH-------hHHhHHHHHHHHHHHHHHHHH
Q 008473 155 LVT--KSLINALLFLIERNSSL------RQRFMYYVH-------GLRIIIRVFVWLSLFLLVRIF 204 (564)
Q Consensus 155 lva--~~~~~~~~fli~~~~~~------~kk~~y~v~-------~L~~~v~~~~W~~~~l~~~~~ 204 (564)
++. ..+|-+++|+|..-+.. +|-++||+. .|=.|...|+|+++.++.+..
T Consensus 544 Ii~GNTgFPi~Lr~iIWimyKit~~~~~~~Eal~fLldHpRrcfTlLfps~~tw~Lf~tl~~lni 608 (854)
T KOG1341|consen 544 IIIGNTGFPIFLRFIIWIMYKITRFSSQFKEALYFLLDHPRRCFTLLFPSGATWVLFLTLLGLNI 608 (854)
T ss_pred HHHcCCCchHHHHHHHHHhhhcccchhhHHHhhhHHhcCCcceeEEEecCccchhHHHHHHHHHH
Confidence 111 25678888888766644 467788873 455677888898887775443
No 84
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=49.64 E-value=21 Score=40.51 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=46.3
Q ss_pred HHHHHhccCCCccccHhHHhhcCC----------HHHHHHHHHhccccCCCCcccHHHHHHHHHHHH
Q 008473 383 YIFKNVADTGCDYIGKEQLYRFLI----------AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (564)
Q Consensus 383 ~IF~s~~~~g~~~I~~eDl~~fl~----------~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~ 439 (564)
.=|.+++ +++++++..|+.+.|. +||++++..-.+.| .+|+++.+||...+.++-
T Consensus 23 ~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~-~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 23 EKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVD-ADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred HHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCC-cCCccCHHHHHHHHHhhh
Confidence 3478888 8999999999887552 79999999999999 999999999998665543
No 85
>COG5117 NOC3 Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]
Probab=49.45 E-value=3e+02 Score=31.22 Aligned_cols=127 Identities=14% Similarity=0.141 Sum_probs=71.7
Q ss_pred CccccHhHHhh-cCC------HHHHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHH
Q 008473 393 CDYIGKEQLYR-FLI------AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYNERKALSHFIKQSKAATQELNRLFTG 465 (564)
Q Consensus 393 ~~~I~~eDl~~-fl~------~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~~ERk~L~~SL~d~~t~i~~L~~il~~ 465 (564)
+.+..++++.. +++ .+.+.+++.-=-....-.+=++=-+....+++++||+.+..-|+|.++++...++.=+.
T Consensus 322 rN~~vle~vld~~ls~n~L~D~~~~~k~w~~n~~~~k~~KKd~~hlsKK~RK~~KE~~~I~~Emr~ae~i~~a~e~eknq 401 (657)
T COG5117 322 RNPLVLEYVLDIPLSDNSLRDEEKARKYWEANKPVSKREKKDIFHLSKKLRKIEKERLRIQSEMRDAEDIEEAIEEEKNQ 401 (657)
T ss_pred hCchhHHHHHhccchhhhhhhhhhhHHhhhcCCcchhhhhcchhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhH
Confidence 44677788777 444 34455555310000001111222377788999999999999999999999998887543
Q ss_pred HHHH-HHHHHHHHHhcchhHHHHHHHHHHHHHHH---HHhh-hhHHHHHhHhhhhhhcCCcC
Q 008473 466 IVVV-VIIILWLILMGFLTTQALVFITSQLVLAA---FMFG-NTVKNIFESIIFLYVMHPFD 522 (564)
Q Consensus 466 iv~i-I~iii~L~ilgv~~t~lla~~gs~~lals---F~f~-~t~~n~~~siIFIfv~hPFd 522 (564)
--+. |++.+++-++--+...+ +|.++-|+. =+.. .-+.++++++=+++-..|||
T Consensus 402 seIlkiif~~Yf~vLk~~~k~l---ig~vleGl~k~~~~~n~eflGD~Levl~eL~~d~~~d 460 (657)
T COG5117 402 SEILKIIFRLYFMVLKGDRKDL---IGYVLEGLVKYRKIINPEFLGDLLEVLYELLNDNPLD 460 (657)
T ss_pred HHHHHHHHHHHHHHHhcchHHH---HHHHHHHHHHHHhhcCHHHHhHHHHHHHHHHcCCchh
Confidence 3222 23334444443333322 333333332 1111 22456677777777788886
No 86
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=48.32 E-value=36 Score=28.47 Aligned_cols=51 Identities=20% Similarity=0.341 Sum_probs=40.1
Q ss_pred CCCccccHhHHhh----cCCHHHHHHHHHhccccCCCCcccHHHHHHHHHHHHHHh
Q 008473 391 TGCDYIGKEQLYR----FLIAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYNER 442 (564)
Q Consensus 391 ~g~~~I~~eDl~~----fl~~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~~ER 442 (564)
|....+.|..|.. ++++++.+.....|+.= ..++||++||+..+..+--++
T Consensus 4 P~sp~~~F~~L~~~l~~~l~~~~~~~l~~~Y~~~-k~~kIsR~~fvr~lR~IVGD~ 58 (70)
T PF12174_consen 4 PTSPWMPFPMLFSALSKHLPPSKMDLLQKHYEEF-KKKKISREEFVRKLRQIVGDQ 58 (70)
T ss_pred CCCCcccHHHHHHHHHHHCCHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHH
Confidence 5566667666655 56778888888888766 889999999999999988654
No 87
>COG4709 Predicted membrane protein [Function unknown]
Probab=47.82 E-value=1.1e+02 Score=30.46 Aligned_cols=8 Identities=25% Similarity=0.389 Sum_probs=3.4
Q ss_pred HhHHhhcC
Q 008473 398 KEQLYRFL 405 (564)
Q Consensus 398 ~eDl~~fl 405 (564)
++++..-+
T Consensus 43 E~EI~~~L 50 (195)
T COG4709 43 EEEIAKDL 50 (195)
T ss_pred HHHHHHHh
Confidence 44444433
No 88
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=45.81 E-value=44 Score=37.21 Aligned_cols=53 Identities=17% Similarity=0.324 Sum_probs=44.1
Q ss_pred HHhccCCCccccHhHHhhcCC---HHHHHHHHHhccccCCCCcccHHHHHHHHHHHH
Q 008473 386 KNVADTGCDYIGKEQLYRFLI---AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (564)
Q Consensus 386 ~s~~~~g~~~I~~eDl~~fl~---~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~ 439 (564)
+-|-++|++.|+.|+|.+|+. +|-.+.=|.-||.. .+|.||..+|..++...-
T Consensus 293 yFFG~rg~~kLs~deF~~F~e~Lq~Eil~lEF~~~~~~-~~g~Ise~DFA~~lL~~a 348 (489)
T KOG2643|consen 293 YFFGKRGNGKLSIDEFLKFQENLQEEILELEFERFDKG-DSGAISEVDFAELLLAYA 348 (489)
T ss_pred HhhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhCcc-cccccCHHHHHHHHHHHc
Confidence 445678999999999999997 34446679999998 889999999999988654
No 89
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.55 E-value=43 Score=37.87 Aligned_cols=68 Identities=18% Similarity=0.145 Sum_probs=55.5
Q ss_pred hccCCHHHHHHHHHHHHHHhccCCCccccHhHHhhcCC-----HHHHHHHHHhccccCCCCcccHHHHHHHHHHHH
Q 008473 369 KSIKSEFEAKSAANYIFKNVADTGCDYIGKEQLYRFLI-----AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (564)
Q Consensus 369 ~~i~se~eAkalAr~IF~s~~~~g~~~I~~eDl~~fl~-----~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~ 439 (564)
++|+-| -+..=-.-|+++..+-+++|.=.--..||. -+|...++.+-|.| .+|-+|++||+.+.--+.
T Consensus 223 w~IT~E--QReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d-~DGALtL~EFcAAfHLVV 295 (737)
T KOG1955|consen 223 WQITPE--QREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVD-RDGALTLSEFCAAFHLVV 295 (737)
T ss_pred cccCHH--HHHHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccC-ccccccHHHHHhhHhhee
Confidence 556644 566677789999988888888777777775 58999999999999 999999999998876554
No 90
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=45.12 E-value=96 Score=29.89 Aligned_cols=29 Identities=10% Similarity=0.237 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhHhhhhhhcCCcCC
Q 008473 489 FITSQLVLAAFMFGNTVKNIFESIIFLYVMHPFDV 523 (564)
Q Consensus 489 ~~gs~~lalsF~f~~t~~n~~~siIFIfv~hPFdV 523 (564)
.+|.+++|+|.+. +..|+.++...+|...
T Consensus 40 ~lg~~~lAlg~vL------~~~g~~~~~~~~~~~~ 68 (191)
T PF04156_consen 40 ILGIALLALGVVL------LSLGLLCLLSKRPVQS 68 (191)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHcccccc
Confidence 3444455544443 2345555555665543
No 91
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=44.11 E-value=66 Score=38.11 Aligned_cols=115 Identities=15% Similarity=0.028 Sum_probs=79.1
Q ss_pred chhhhHHHhhhhccchhhHHHHHHHHHHHHHHHHhhcccc-cccccccchhhHHHHHH-HHHHHHHHHHhHHHHHhhhhh
Q 008473 91 DVHKDKQKRKILKKPYVLIELAAFGCIMALLICSLTVKQL-QNHVIWDFKLWKWCVFL-LVIVSCRLVTKSLINALLFLI 168 (564)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~r~~~~v~~~~~Ll~~~~i~~~-~~~~i~~~~lw~w~v~~-lv~~~g~lva~~~~~~~~fli 168 (564)
....++.+...-. .....+++.++..+.+.+.++.+... .-.......+|.-.+|- ++.|.-++-+...++.+.+++
T Consensus 129 ~~~~~~~~l~~~~-~~~~~~~~~~i~~I~~~~iv~~lv~~l~i~~~~~~~~~~~~~~kw~~~~~v~~~~~lv~~~~~~~v 207 (714)
T KOG4629|consen 129 ESIFSEEKLPDET-RRSLLSSITVITWILLVLIVSSLVCSLGIHVHRLVTLWSLILWKWLVTLLVRITAVLVSSWFAALV 207 (714)
T ss_pred ccccchhccchhh-hhcccccHHHHHHHHHHHHHHHHHhhhhhheecccceEEEEeeeehhhhHHHHHHHHHHhhHHHHH
Confidence 3334555555554 56788888888777777666655433 33343344456655553 667777777778888888888
Q ss_pred ccccccchhhHHhhHhHHhHHHHHHHHHHHHHHHHHHHh
Q 008473 169 ERNSSLRQRFMYYVHGLRIIIRVFVWLSLFLLVRIFLFR 207 (564)
Q Consensus 169 ~~~~~~~kk~~y~v~~L~~~v~~~~W~~~~l~~~~~l~~ 207 (564)
-.-......+++.+--...+++.+.|. +.|+.|..+..
T Consensus 208 vf~~~~n~~~r~~~l~~v~~~~~~vq~-~~~l~~lv~la 245 (714)
T KOG4629|consen 208 VFLIESNFLRRKKVLYFVYGLRKFVQT-GIWLGKLVLLA 245 (714)
T ss_pred HHHhhhhHHHHHHHHHHHhhhHHHHHH-HHHHhHHHHHH
Confidence 877777778888888888899999999 67777665543
No 92
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=43.03 E-value=38 Score=29.09 Aligned_cols=29 Identities=14% Similarity=0.366 Sum_probs=23.6
Q ss_pred HHHHHHHhccccCC-CCcccHHHHHHHHHH
Q 008473 409 EVSLLLNQFEGAAK-TEKIQELEFKKWVLK 437 (564)
Q Consensus 409 eA~~aF~lFD~d~~-nG~IS~~El~~~v~~ 437 (564)
..-+.|+.||.+.+ +|.|+.+||+..+.+
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~ 40 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQK 40 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHH
Confidence 34678999998326 899999999999865
No 93
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=42.50 E-value=2e+02 Score=28.14 Aligned_cols=21 Identities=10% Similarity=0.056 Sum_probs=13.3
Q ss_pred cccHHHHHHHHHHHHHHhhhh
Q 008473 425 KIQELEFKKWVLKVYNERKAL 445 (564)
Q Consensus 425 ~IS~~El~~~v~~i~~ERk~L 445 (564)
..-..+..+.+.+++..|..-
T Consensus 107 ~~~~~~~l~~l~~l~~~R~~R 127 (209)
T PF14023_consen 107 EALQAEALSALNDLIDARRTR 127 (209)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344566667777777776543
No 94
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=42.15 E-value=49 Score=36.97 Aligned_cols=61 Identities=21% Similarity=0.199 Sum_probs=48.7
Q ss_pred HHHHHHHHHhccCCCccccHhHHhh---cC--------CHHHHHHHHHhccccCCCCcccHHHHHHHHHHHHH
Q 008473 379 SAANYIFKNVADTGCDYIGKEQLYR---FL--------IAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYN 440 (564)
Q Consensus 379 alAr~IF~s~~~~g~~~I~~eDl~~---fl--------~~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~~ 440 (564)
+--+.||+-++.+.++.|++++|.. .+ ++++..+.=...|.+ ++|.|..-||.++..-+-+
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~N-kDG~IDlNEfLeAFrlvdr 618 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLN-KDGKIDLNEFLEAFRLVDR 618 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccC-CCCcccHHHHHHHHhhhcc
Confidence 3456799999999999999999874 22 267777777888999 9999999999888765554
No 95
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=39.38 E-value=23 Score=38.84 Aligned_cols=25 Identities=8% Similarity=0.090 Sum_probs=23.3
Q ss_pred HHHHHHHHHhccccCCCCcccHHHHH
Q 008473 407 AEEVSLLLNQFEGAAKTEKIQELEFK 432 (564)
Q Consensus 407 ~eeA~~aF~lFD~d~~nG~IS~~El~ 432 (564)
+.+++.+|++||.+ +||.|+++|+.
T Consensus 333 ~~~l~~aF~~~D~d-gdG~Is~~E~~ 357 (391)
T PRK12309 333 THAAQEIFRLYDLD-GDGFITREEWL 357 (391)
T ss_pred hHHHHHHHHHhCCC-CCCcCcHHHHH
Confidence 57889999999999 99999999995
No 96
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.38 E-value=48 Score=35.49 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=41.5
Q ss_pred HHHHHhccCCCccccHhHHhhcC-C------HHHHHHHHHhccccCCCCcccHHHHHHH
Q 008473 383 YIFKNVADTGCDYIGKEQLYRFL-I------AEEVSLLLNQFEGAAKTEKIQELEFKKW 434 (564)
Q Consensus 383 ~IF~s~~~~g~~~I~~eDl~~fl-~------~eeA~~aF~lFD~d~~nG~IS~~El~~~ 434 (564)
+.+.-.+++++++|+.+++...+ + +.||+..+.-=|.| .+|++|++|+..-
T Consensus 245 ~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~d-kD~kLs~eEIl~~ 302 (325)
T KOG4223|consen 245 QFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADED-KDGKLSKEEILEH 302 (325)
T ss_pred HHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccC-ccccccHHHHhhC
Confidence 55556677999999999999854 3 56788777777888 9999999999764
No 97
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=39.15 E-value=38 Score=32.29 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=12.1
Q ss_pred HHhccccCCCCcccHHHHHHHHHHHH
Q 008473 414 LNQFEGAAKTEKIQELEFKKWVLKVY 439 (564)
Q Consensus 414 F~lFD~d~~nG~IS~~El~~~v~~i~ 439 (564)
++.||.+ +||.|.-.|++..+....
T Consensus 94 LrvFDke-g~G~i~~aeLRhvLttlG 118 (152)
T KOG0030|consen 94 LRVFDKE-GNGTIMGAELRHVLTTLG 118 (152)
T ss_pred HHhhccc-CCcceeHHHHHHHHHHHH
Confidence 3445555 555555555554444433
No 98
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=38.42 E-value=1.1e+02 Score=37.13 Aligned_cols=75 Identities=21% Similarity=0.308 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHhhhhhccccccchhhHHhhHhHHhHH-HHHHHHHHHHHHHHHHHhcCC--CCCc-c
Q 008473 140 LWKWCVFLLVIVSCRLVTKSLINALLFLIERNSSLRQRFMYYVHGLRIII-RVFVWLSLFLLVRIFLFRHGV--KRSK-E 215 (564)
Q Consensus 140 lw~w~v~~lv~~~g~lva~~~~~~~~fli~~~~~~~kk~~y~v~~L~~~v-~~~~W~~~~l~~~~~l~~~~~--~~~~-~ 215 (564)
-+-|.+|++....+-.|+. +.+|++|+.++- -|-.=++.=++|- ..|----++|+.|..+|++.| +.++ +
T Consensus 561 Pfs~svWVmmFVm~livaa----i~vFlFEy~SPv--gyn~~l~~gkkpggp~FtigkaiwllwaLvFnnsVpv~nPKgt 634 (1258)
T KOG1053|consen 561 PFSPSVWVMMFVMCLIVAA----ITVFLFEYFSPV--GYNRNLANGKKPGGPSFTIGKAIWLLWALVFNNSVPVENPKGT 634 (1258)
T ss_pred CcchHHHHHHHHHHHHHHH----HHHHHHhhcCcc--cccccccCCCCCCCcceehhhHHHHHHHHHhCCCcCCCCCCch
Confidence 3578888887777777665 445666665531 0000000001110 011122345667888999775 4444 3
Q ss_pred hhhHH
Q 008473 216 TTKIL 220 (564)
Q Consensus 216 ~~~~l 220 (564)
+++++
T Consensus 635 TskiM 639 (1258)
T KOG1053|consen 635 TSKIM 639 (1258)
T ss_pred HHHHH
Confidence 44555
No 99
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=36.69 E-value=15 Score=30.60 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=26.7
Q ss_pred HHHHHhccCCCccccHhHHhhcCCHHHHHHHHHhccc
Q 008473 383 YIFKNVADTGCDYIGKEQLYRFLIAEEVSLLLNQFEG 419 (564)
Q Consensus 383 ~IF~s~~~~g~~~I~~eDl~~fl~~eeA~~aF~lFD~ 419 (564)
.-|+.+ ..|+.||+.+||.+.+++|+|+-+-+....
T Consensus 10 ~aFr~l-A~~KpyVT~~dLr~~l~pe~aey~~~~Mp~ 45 (69)
T PF08726_consen 10 EAFRAL-AGGKPYVTEEDLRRSLTPEQAEYCISRMPP 45 (69)
T ss_dssp HHHHHH-CTSSSCEEHHHHHHHS-CCCHHHHHCCSEC
T ss_pred HHHHHH-HcCCCcccHHHHHHHcCcHHHHHHHHHCcc
Confidence 346666 478999999999999998888776654443
No 100
>PF13239 2TM: 2TM domain
Probab=35.84 E-value=1.4e+02 Score=25.23 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=30.6
Q ss_pred chhhHHHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHhHHH
Q 008473 105 PYVLIELAAFGCIMALLICSLTVKQLQNHVIWDFKLWKWCVFLLVIVSCRLVTKSLI 161 (564)
Q Consensus 105 ~~~~~r~~~~v~~~~~Ll~~~~i~~~~~~~i~~~~lw~w~v~~lv~~~g~lva~~~~ 161 (564)
..+....++|++..++|+.+=.+. +.. +.|.+|.+..|+.-|+.|.+-
T Consensus 13 k~fy~Hl~~y~ivn~~l~~in~~~---~~~------~~W~~~~~~~Wgi~L~~h~~~ 60 (83)
T PF13239_consen 13 KGFYRHLAVYLIVNSFLIFINLFT---GPG------YFWPLWPILGWGIGLAIHALK 60 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc---CCC------CchHHHHHHHHHHHHHHHHHH
Confidence 355567777777777776653332 111 127788888998887777554
No 101
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=35.68 E-value=60 Score=27.98 Aligned_cols=30 Identities=7% Similarity=0.146 Sum_probs=24.3
Q ss_pred HHHHHHHh-ccccCCCC-cccHHHHHHHHHHHH
Q 008473 409 EVSLLLNQ-FEGAAKTE-KIQELEFKKWVLKVY 439 (564)
Q Consensus 409 eA~~aF~l-FD~d~~nG-~IS~~El~~~v~~i~ 439 (564)
....+|+. +|.| ++| .||++||+..+.+-+
T Consensus 10 ~l~~~F~~y~~~d-g~~~~Ls~~Elk~ll~~e~ 41 (89)
T cd05023 10 SLIAVFQKYAGKD-GDSYQLSKTEFLSFMNTEL 41 (89)
T ss_pred HHHHHHHHHhccC-CCcCeECHHHHHHHHHHhh
Confidence 45778988 7787 765 999999999887764
No 102
>PF03526 Microcin: Colicin E1 (microcin) immunity protein; InterPro: IPR003061 The structural and functional relationships among independently cloned segments of the plasmid ColE1 region that regulates and codes for colicin E1 (cea), immunity (imm) and the mitomycin C-induced lethality function (lys) have been analysed []. A model for the structure and expression of the colicin E1 operon has been proposed in which the cea and lys genes are expressed from a single inducible promoter that is controlled by the lexA repressor in response to the SOS system of Escherichia coli []. The imm gene lies between the cea and lys genes and is expressed by transcription in the opposite direction from a promoter located within the lys gene []. This arrangement indicates that the transcriptional units for all three genes overlap. It is proposed that the formation of anti-sense RNA may be an important element in the coordinate regulation of gene expression in this system []. Hydropathy analysis of the imm gene products suggests that they have hydrophobic domains characteristic of membrane-associated proteins []. The microcin E1 immunity protein is able to protect a cell that harbours the plasmid ColE1 encoding colicin E1 against colicin E1; it is thus essential both for autonomous replication and colicin E1 immunity []. ; GO: 0015643 toxin binding, 0030153 bacteriocin immunity
Probab=34.44 E-value=60 Score=25.99 Aligned_cols=35 Identities=20% Similarity=0.500 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 008473 225 RVLASSLVGAALWCLKSFSVLLLAVSFQSKRFFNP 259 (564)
Q Consensus 225 kvL~~~~v~a~i~l~ekiliq~IA~sFH~~~y~dR 259 (564)
+.|.++.++++++=.-|-.|+-+|..|-.+-|..+
T Consensus 8 ~~l~~~iiStIl~PfSk~aIE~ialkft~keFw~~ 42 (55)
T PF03526_consen 8 KMLYLAIISTILFPFSKWAIEKIALKFTKKEFWNK 42 (55)
T ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHhccHHHHhc
Confidence 56788888999888888888999999888888766
No 103
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=32.78 E-value=49 Score=26.17 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhccCCCccccHhHHhhcC
Q 008473 378 KSAANYIFKNVADTGCDYIGKEQLYRFL 405 (564)
Q Consensus 378 kalAr~IF~s~~~~g~~~I~~eDl~~fl 405 (564)
...|+.+|+..++.+++.|..++|..|.
T Consensus 20 ~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy 47 (51)
T PF14788_consen 20 DEYARQLFQECDKSQSGRLEGEEFEEFY 47 (51)
T ss_dssp HHHHHHHHHHH-SSSSSEBEHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCccHHHHHHHH
Confidence 3689999999999999999999998875
No 104
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=32.22 E-value=37 Score=27.16 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=9.7
Q ss_pred CCcCCCcEEEECCccc
Q 008473 519 HPFDVGDRCIIDGVQV 534 (564)
Q Consensus 519 hPFdVGDrV~I~g~~~ 534 (564)
-||..||||.+-+..+
T Consensus 4 Gpf~~GdrVQlTD~Kg 19 (54)
T PF14801_consen 4 GPFRAGDRVQLTDPKG 19 (54)
T ss_dssp -S--TT-EEEEEETT-
T ss_pred CCCCCCCEEEEccCCC
Confidence 5999999999977665
No 105
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.49 E-value=99 Score=28.74 Aligned_cols=58 Identities=7% Similarity=0.104 Sum_probs=38.9
Q ss_pred CCHHHH-HHHHHhccccCCCCcccHHHHHHHHHHHHHHhh--hhhhhhhchhHHHHHHHHHH
Q 008473 405 LIAEEV-SLLLNQFEGAAKTEKIQELEFKKWVLKVYNERK--ALSHFIKQSKAATQELNRLF 463 (564)
Q Consensus 405 l~~eeA-~~aF~lFD~d~~nG~IS~~El~~~v~~i~~ERk--~L~~SL~d~~t~i~~L~~il 463 (564)
|++|+. -..|+|.|.| +||.+.--|+..++........ +=.--+.+-..+.+.+|.++
T Consensus 63 mtpeqlqfHYF~MHDld-knn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL 123 (144)
T KOG4065|consen 63 MTPEQLQFHYFSMHDLD-KNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVL 123 (144)
T ss_pred CCHHHHhhhhhhhhccC-cCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHh
Confidence 555655 4689999999 9999999999999999987321 11122334444555555443
No 106
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=29.47 E-value=72 Score=20.71 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=15.6
Q ss_pred CcCCCcEEEECCccccccccccEEEEEe
Q 008473 520 PFDVGDRCIIDGVQVTDIFILKIEVCVS 547 (564)
Q Consensus 520 PFdVGDrV~I~g~~~~~~~~~~~VeeI~ 547 (564)
+|.+||.|.|-+-+..+ ..|+|.+++
T Consensus 1 ~~~~G~~V~I~~G~~~g--~~g~i~~i~ 26 (28)
T smart00739 1 KFEVGDTVRVIAGPFKG--KVGKVLEVD 26 (28)
T ss_pred CCCCCCEEEEeECCCCC--cEEEEEEEc
Confidence 57899999996543210 123666653
No 107
>PRK11877 psaI photosystem I reaction center subunit VIII; Reviewed
Probab=29.28 E-value=29 Score=25.88 Aligned_cols=30 Identities=7% Similarity=-0.178 Sum_probs=22.7
Q ss_pred HHHHHhHHHHHhhhhhccccccchhhHHhh
Q 008473 153 CRLVTKSLINALLFLIERNSSLRQRFMYYV 182 (564)
Q Consensus 153 g~lva~~~~~~~~fli~~~~~~~kk~~y~v 182 (564)
|-..|.|+|-+|+-++|.+|+..--.+.|+
T Consensus 3 g~~aas~LPsI~VPlVGlvfPai~Mallf~ 32 (38)
T PRK11877 3 GDFAASWLPWIFVPLVGWVFPAVFMVLLGR 32 (38)
T ss_pred chHhHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 556788999999999999998644444443
No 108
>PF09204 Colicin_immun: Bacterial self-protective colicin-like immunity; InterPro: IPR015287 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). Colicin D immunity protein (ImmD) inhibits the bactericidal activity of colicin D by binding to its tRNase catalytic domain []. This entry represents the structural domain of ImmD and related klebicin and microcin immunity proteins. ; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1V74_B 1TFO_B 1TFK_B.
Probab=29.21 E-value=1.1e+02 Score=26.89 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=29.7
Q ss_pred CCCcccHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHH
Q 008473 422 KTEKIQELEFKKWVLKVYNERKALSHFIKQSKAATQELNRLFTG 465 (564)
Q Consensus 422 ~nG~IS~~El~~~v~~i~~ERk~L~~SL~d~~t~i~~L~~il~~ 465 (564)
-+|.||-++|.+...+.++-.+.....++|.+.+-+.|+.++..
T Consensus 13 v~~~IsA~~Fse~y~e~wk~Er~~~~~~~d~~~l~~~l~~lF~~ 56 (88)
T PF09204_consen 13 VNGEISADEFSEAYIELWKIERDSGYLLKDDEKLFECLSSLFCA 56 (88)
T ss_dssp HTTSS-HHHHHHHHH----HHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHH
Confidence 36899999999999999988777776778888888888877643
No 109
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=28.62 E-value=72 Score=30.51 Aligned_cols=49 Identities=27% Similarity=0.249 Sum_probs=29.7
Q ss_pred HHhccCCCccccHhHHhhcCC---H----HHHHHHHHhccccCCCCcccHHHHHHHHH
Q 008473 386 KNVADTGCDYIGKEQLYRFLI---A----EEVSLLLNQFEGAAKTEKIQELEFKKWVL 436 (564)
Q Consensus 386 ~s~~~~g~~~I~~eDl~~fl~---~----eeA~~aF~lFD~d~~nG~IS~~El~~~v~ 436 (564)
+.|+++|++.|.-.+|...+. + +|++...+=-. | .||.|..++|+..+.
T Consensus 95 rvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D-~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 95 RVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-D-SNGCINYEAFVKHIM 150 (152)
T ss_pred HhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-c-cCCcCcHHHHHHHHh
Confidence 345556666666555555553 2 45555444222 4 789999999987764
No 110
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=28.22 E-value=59 Score=33.79 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhccCCCccccHhHHhhcCC---H-------HHHHHHHHhccccCCCCcccHHHHHHHH
Q 008473 377 AKSAANYIFKNVADTGCDYIGKEQLYRFLI---A-------EEVSLLLNQFEGAAKTEKIQELEFKKWV 435 (564)
Q Consensus 377 AkalAr~IF~s~~~~g~~~I~~eDl~~fl~---~-------eeA~~aF~lFD~d~~nG~IS~~El~~~v 435 (564)
.+.--.-||..++.+.++.|+..++.+..- + +|-+.-|...|.| ++|.|+-+|++-..
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpd-gDGhvsWdEykvkF 166 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPD-GDGHVSWDEYKVKF 166 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCC-CCCceehhhhhhHH
Confidence 345667899999999999999999998543 2 2345567888999 99999999987543
No 111
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=27.35 E-value=5e+02 Score=28.13 Aligned_cols=18 Identities=28% Similarity=0.384 Sum_probs=9.6
Q ss_pred hhhhhHHHhHHHHHHHHHhc
Q 008473 255 RFFNPIQETIFHQYLIQTLS 274 (564)
Q Consensus 255 ~y~dRIqesk~~~~~L~~L~ 274 (564)
+|.+.+|+ +..+++..|.
T Consensus 3 ~fd~~l~~--~t~~~i~sl~ 20 (336)
T PF05055_consen 3 SFDSSLQE--RTNRVISSLA 20 (336)
T ss_pred CccHHHHH--HHHHHHHHhh
Confidence 45555554 3455666664
No 112
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=27.23 E-value=1.9e+02 Score=25.47 Aligned_cols=58 Identities=12% Similarity=-0.035 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHhhccccc-ccccccchhhHHHHHHHHHHHHHHHHhHHHHHhh
Q 008473 108 LIELAAFGCIMALLICSLTVKQLQ-NHVIWDFKLWKWCVFLLVIVSCRLVTKSLINALL 165 (564)
Q Consensus 108 ~~r~~~~v~~~~~Ll~~~~i~~~~-~~~i~~~~lw~w~v~~lv~~~g~lva~~~~~~~~ 165 (564)
..||+.....++.+..++....++ +...+...+|.-=+|.+++++++.++..+=+++.
T Consensus 4 ~~~~l~~~~~l~~~w~~l~~~~~~~~~~~~~~ii~~lP~~~Lv~fG~Ysl~~lgy~v~t 62 (91)
T PF08285_consen 4 LQQWLSALLLLSALWLALLLGLLPLPPEPQQEIIPYLPFYALVSFGCYSLFTLGYGVAT 62 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCchhHHHHHHHhhHHHHHHHHHHHHHHHHHhhhc
Confidence 467888888888877776554443 2345555666555667788887776655444443
No 113
>COG3336 Predicted membrane protein [Function unknown]
Probab=27.11 E-value=8e+02 Score=26.26 Aligned_cols=89 Identities=7% Similarity=-0.004 Sum_probs=58.9
Q ss_pred cchhhHHH---HHHHHHHHHHHHHhHHHHHhhhhhccccccchhhHHhhHhHHhHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 008473 137 DFKLWKWC---VFLLVIVSCRLVTKSLINALLFLIERNSSLRQRFMYYVHGLRIIIRVFVWLSLFLLVRIFLFRHGVKRS 213 (564)
Q Consensus 137 ~~~lw~w~---v~~lv~~~g~lva~~~~~~~~fli~~~~~~~kk~~y~v~~L~~~v~~~~W~~~~l~~~~~l~~~~~~~~ 213 (564)
.-++|+|+ +..+.+|.|-+-+--+|-+|-...+.+.. +++..+.-++..++.|-.++..+.+..
T Consensus 119 ~~~~~~~~~~P~vA~ilfig~~~~~hvpplfda~v~~p~~-------------H~lm~~~~f~~aylfww~mI~~dpg~r 185 (299)
T COG3336 119 VSRFTKFLSHPIVALILFIGAFWAWHVPPLFDAAVTSPTL-------------HLLMNLLFFLSAYLFWWAMIGPDPGPR 185 (299)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHhccchhhhhhhhcccH-------------HHHHHHHHHHHHHHHHHHHHccCCCCc
Confidence 45678998 66778888888777888888888887776 677788888888899988887533221
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008473 214 KETTKILNYVTRVLASSLVGAALWCLKSFS 243 (564)
Q Consensus 214 ~~~~~~l~~v~kvL~~~~v~a~i~l~ekil 243 (564)
+ +.+..|+...+......-.+-+.+
T Consensus 186 ~-----ls~~~Rl~~l~~~~~~~~~~~~~i 210 (299)
T COG3336 186 R-----LSYLMRLGYLFAAMPLHAFFGALI 210 (299)
T ss_pred c-----chHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 124555554444444433333333
No 114
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=26.99 E-value=58 Score=36.46 Aligned_cols=32 Identities=13% Similarity=0.151 Sum_probs=27.4
Q ss_pred HHHHHHHHHhccccCCCCcccHHHHHHHHHHHH
Q 008473 407 AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (564)
Q Consensus 407 ~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~ 439 (564)
....+.+|+..|.| ..|.||.+||+.++.-..
T Consensus 546 ks~LetiF~~iD~D-~SG~isldEF~~a~~l~~ 577 (631)
T KOG0377|consen 546 KSSLETIFNIIDAD-NSGEISLDEFRTAWKLLS 577 (631)
T ss_pred hhhHHHHHHHhccC-CCCceeHHHHHHHHHHHH
Confidence 45678899999999 999999999998875443
No 115
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A.
Probab=25.33 E-value=1.2e+02 Score=25.67 Aligned_cols=57 Identities=32% Similarity=0.364 Sum_probs=35.2
Q ss_pred HHHHHHHHHhccCCCc-------cccHhHHhhcCC---HHHHHHHHHhccccCCCCcccHHHHHHHHHHHH
Q 008473 379 SAANYIFKNVADTGCD-------YIGKEQLYRFLI---AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (564)
Q Consensus 379 alAr~IF~s~~~~g~~-------~I~~eDl~~fl~---~eeA~~aF~lFD~d~~nG~IS~~El~~~v~~i~ 439 (564)
.+.+.|.+.++.+|.= .++.+++....+ .|=|.++++.|=+ ++|+.+++...|.+.|
T Consensus 13 sf~eAil~GlA~DGGLyvP~~iP~l~~~~l~~l~~~sy~elA~~il~~f~~----~di~~~~L~~ii~~AY 79 (79)
T PF14821_consen 13 SFKEAILQGLAPDGGLYVPEEIPKLSKEELEELKNLSYAELAFEILSPFLG----DDIPEEELKEIIEKAY 79 (79)
T ss_dssp -HHHHHHH-SBTTSB-EEESS-----HHHHHHHTTS-HHHHHHHHHHHHCC----CCS-HHHHHHHHHHHT
T ss_pred CHHHHHHhCCCCCCeeEecCcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHc----cCCCHHHHHHHHHHHC
Confidence 4677888888877643 355555666554 4555666665554 4899999999998765
No 116
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=24.82 E-value=73 Score=25.28 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=15.8
Q ss_pred cCCCcEEEE--CCccccccccccEEEEEe
Q 008473 521 FDVGDRCII--DGVQVTDIFILKIEVCVS 547 (564)
Q Consensus 521 FdVGDrV~I--~g~~~~~~~~~~~VeeI~ 547 (564)
|.+||.|.. +|..| +|.+++
T Consensus 1 f~~GDvV~LKSGGp~M-------TV~~v~ 22 (53)
T PF09926_consen 1 FKIGDVVQLKSGGPRM-------TVTEVG 22 (53)
T ss_pred CCCCCEEEEccCCCCe-------EEEEcc
Confidence 789999988 46677 788763
No 117
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=24.46 E-value=97 Score=35.25 Aligned_cols=46 Identities=9% Similarity=0.049 Sum_probs=33.4
Q ss_pred CCCccccHhHHhhcCC----H-HHHHHHHHhccccCCCCcccHHHHHHHHHH
Q 008473 391 TGCDYIGKEQLYRFLI----A-EEVSLLLNQFEGAAKTEKIQELEFKKWVLK 437 (564)
Q Consensus 391 ~g~~~I~~eDl~~fl~----~-eeA~~aF~lFD~d~~nG~IS~~El~~~v~~ 437 (564)
-.++-|+++||..|-. + -.-+.||.+||+. ++|++|.+++.+.+.+
T Consensus 86 tKDglisf~eF~afe~~lC~pDal~~~aFqlFDr~-~~~~vs~~~~~~if~~ 136 (694)
T KOG0751|consen 86 TKDGLISFQEFRAFESVLCAPDALFEVAFQLFDRL-GNGEVSFEDVADIFGQ 136 (694)
T ss_pred cccccccHHHHHHHHhhccCchHHHHHHHHHhccc-CCCceehHHHHHHHhc
Confidence 3455788888876432 2 2337899999998 9999999888776543
No 118
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=24.27 E-value=1.6e+02 Score=30.78 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhccCCCccccHhHHhh-cCCH
Q 008473 376 EAKSAANYIFKNVADTGCDYIGKEQLYR-FLIA 407 (564)
Q Consensus 376 eAkalAr~IF~s~~~~g~~~I~~eDl~~-fl~~ 407 (564)
+|+.=.+--|+-++.+|++.+.-+++.. |+..
T Consensus 137 eameeSkthFraVDpdgDGhvsWdEykvkFlas 169 (362)
T KOG4251|consen 137 EAMEESKTHFRAVDPDGDGHVSWDEYKVKFLAS 169 (362)
T ss_pred HHHhhhhhheeeeCCCCCCceehhhhhhHHHhh
Confidence 5666677778999999999999999998 4444
No 119
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.96 E-value=6.9e+02 Score=27.60 Aligned_cols=56 Identities=11% Similarity=0.135 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhh
Q 008473 197 LFLLVRIFLFRHGVKRSKETTKILNYVTRVLASSLVGAALWCLKS---FSVLLLAVSFQ 252 (564)
Q Consensus 197 ~~l~~~~~l~~~~~~~~~~~~~~l~~v~kvL~~~~v~a~i~l~ek---iliq~IA~sFH 252 (564)
.-+++|..-..+++-.+..+..++-++-+.+..+++-+.++..+- ++|+.+...+|
T Consensus 233 vgliSfaVCYK~GPp~d~RS~~ilmWtLqli~lvl~Yfsvq~p~~a~A~iI~~lc~~~l 291 (452)
T KOG3817|consen 233 VGLISFAVCYKIGPPKDPRSQTILMWTLQLIGLVLAYFSVQHPSAAIAAIIMVLCFVAL 291 (452)
T ss_pred HHHHHHhhhhccCCCCCcchhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 344555555555543333345566677777777777777766554 35666666555
No 120
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=21.11 E-value=1.4e+02 Score=23.62 Aligned_cols=29 Identities=21% Similarity=0.181 Sum_probs=18.6
Q ss_pred CCcCCCcEEEECC---ccccccccccEEEEEeeeEEEEE
Q 008473 519 HPFDVGDRCIIDG---VQVTDIFILKIEVCVSLLYRVLF 554 (564)
Q Consensus 519 hPFdVGDrV~I~g---~~~~~~~~~~~VeeI~Ll~Tvf~ 554 (564)
.+.-|||+|.++. ..+ +|+++-=..|.|.
T Consensus 36 ~~~~VGD~V~~~~~~~~~~-------~I~~vl~R~s~l~ 67 (68)
T cd04466 36 NPPAVGDRVEFEPEDDGEG-------VIEEILPRKNLLI 67 (68)
T ss_pred CCCCCCcEEEEEECCCCcE-------EEEEEeccceEEE
Confidence 3457999998752 223 6777766666554
No 121
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=20.74 E-value=7.5e+02 Score=23.65 Aligned_cols=118 Identities=13% Similarity=0.188 Sum_probs=0.0
Q ss_pred HhHHhhcCCHHHHHHHHHhccccCCCCcc-------------cHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHH-
Q 008473 398 KEQLYRFLIAEEVSLLLNQFEGAAKTEKI-------------QELEFKKWVLKVYNERKALSHFIKQSKAATQELNRLF- 463 (564)
Q Consensus 398 ~eDl~~fl~~eeA~~aF~lFD~d~~nG~I-------------S~~El~~~v~~i~~ERk~L~~SL~d~~t~i~~L~~il- 463 (564)
++.-++-++++|.+++.+-++..-+++.- |.+++.+.+..-+..++. +.-+..++....+-.++
T Consensus 10 L~~~L~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~~i~~~--~~~~~~~~~~~~i~~~i~ 87 (181)
T PF08006_consen 10 LEKYLKKLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEYSIKEE--EKKKSWRNILRAILAIIG 87 (181)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhhhhhhh--hccchhhhhHHHHHHHHH
Q ss_pred -HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHhHhhhhhh
Q 008473 464 -TGIVVVVIIILWLILMGFLTTQALVFITSQLVLAAFMFGNTVKNIFESIIFLYV 517 (564)
Q Consensus 464 -~~iv~iI~iii~L~ilgv~~t~lla~~gs~~lalsF~f~~t~~n~~~siIFIfv 517 (564)
.....++++.+++.++.+-.+-+++.++..+.++.+++......+......+|.
T Consensus 88 l~~~~~~~vl~~~~~~~~~~~~~~i~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~ 142 (181)
T PF08006_consen 88 LGLLSFIIVLAILIVLILLVLALIIAVIAFILSGIILLISGIFGGFFSIFFSLFF 142 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
No 122
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=20.73 E-value=1.2e+02 Score=34.52 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=44.5
Q ss_pred HHHHHHHHHhccCCCccccHhHHhhcCC------------------------------------------HHHHHHHHHh
Q 008473 379 SAANYIFKNVADTGCDYIGKEQLYRFLI------------------------------------------AEEVSLLLNQ 416 (564)
Q Consensus 379 alAr~IF~s~~~~g~~~I~~eDl~~fl~------------------------------------------~eeA~~aF~l 416 (564)
++-+.+|.-|++.|++.++.+|+.+.++ .|.++++|..
T Consensus 108 al~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~ 187 (694)
T KOG0751|consen 108 ALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFRE 187 (694)
T ss_pred HHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777777665432 2668888888
Q ss_pred ccccCCCCcccHHHHHHHHHHHH
Q 008473 417 FEGAAKTEKIQELEFKKWVLKVY 439 (564)
Q Consensus 417 FD~d~~nG~IS~~El~~~v~~i~ 439 (564)
-|.. +||.||--++....+.+-
T Consensus 188 ~d~~-~ng~is~Ldfq~imvt~~ 209 (694)
T KOG0751|consen 188 KDKA-KNGFISVLDFQDIMVTIR 209 (694)
T ss_pred hccc-CCCeeeeechHhhhhhhh
Confidence 8888 888888888877777664
Done!