Query 008474
Match_columns 564
No_of_seqs 148 out of 183
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 04:25:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008474.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008474hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1koaa1 b.1.1.4 (A:6265-6361) 22.6 17 0.0013 27.1 1.8 32 234-269 30-61 (97)
2 d1gska2 b.6.1.3 (A:183-356) Sp 15.8 46 0.0033 28.6 3.3 29 235-272 66-97 (174)
3 d2a7ya1 b.34.6.3 (A:1-80) Hypo 14.1 36 0.0026 26.9 1.8 15 256-270 37-52 (80)
4 d1wiua_ b.1.1.4 (A:) Twitchin 13.2 69 0.005 23.3 3.3 30 235-268 32-61 (93)
5 d1g1ca_ b.1.1.4 (A:) Titin {Hu 12.9 1.8E+02 0.013 21.0 5.7 31 235-270 34-66 (98)
6 d1f3ua_ b.65.1.1 (A:) TFIIF be 12.4 1.1E+02 0.0078 24.9 4.6 39 274-312 80-118 (118)
7 d1pd6a_ b.1.1.4 (A:) Cardiac m 10.6 60 0.0044 24.0 2.2 33 234-270 34-67 (94)
8 d1x5ia1 b.1.2.1 (A:8-120) Neog 10.6 1.7E+02 0.013 21.6 5.1 7 257-263 54-60 (113)
9 d1fhga_ b.1.1.4 (A:) Telokin { 10.0 1.1E+02 0.0077 22.6 3.5 32 235-271 38-71 (102)
10 d3ec9a1 d.17.4.10 (A:10-139) U 9.8 1E+02 0.0075 23.1 3.4 29 238-266 85-113 (130)
No 1
>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=22.55 E-value=17 Score=27.13 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=20.0
Q ss_pred cceEEEeeecCCCCCceecccccEEEeCCCceeeee
Q 008474 234 NNIVRWRTVKNKDGMTSYESNARFVRWSDGSLQLQI 269 (564)
Q Consensus 234 eNTIRWR~~~d~dG~~~kESNARIVRWSDGSlSL~I 269 (564)
..+|.|.+. |..+..++-..+....|..+|.|
T Consensus 30 ~p~v~W~~~----~~~l~~~~~~~~~~~~~~~~L~I 61 (97)
T d1koaa1 30 PPVVTWHKD----DRELKQSVKYMKRYNGNDYGLTI 61 (97)
T ss_dssp CCEEEEEET----TEECCSBTTBBCCCSTTEEEEEE
T ss_pred CCEEEEEEe----eeccceeeEEEEEecCCeeEEEe
Confidence 357999874 55666555555555666666665
No 2
>d1gska2 b.6.1.3 (A:183-356) Spore coat protein A, CotA {Bacillus subtilis [TaxId: 1423]}
Probab=15.81 E-value=46 Score=28.57 Aligned_cols=29 Identities=28% Similarity=0.532 Sum_probs=20.0
Q ss_pred ceEEEeeecCCCCCceecccccE--EEeCCC-ceeeeeccc
Q 008474 235 NIVRWRTVKNKDGMTSYESNARF--VRWSDG-SLQLQIGNE 272 (564)
Q Consensus 235 NTIRWR~~~d~dG~~~kESNARI--VRWSDG-SlSL~IGnE 272 (564)
.++|||..+. ||+++ +.|+|| +|++ ||.+
T Consensus 66 ~~~RlRliNa--------~~~~~~~l~~~~g~~~~v-Ia~D 97 (174)
T d1gska2 66 RKYRFRVINA--------SNTRTYNLSLDNGGDFIQ-IGSD 97 (174)
T ss_dssp SEEEEEEEEC--------CSSCCEEEEETTCCCEEE-EEET
T ss_pred ceEEEEEEec--------ccCceeeEeecCCCcEEE-EEEC
Confidence 4799999853 55555 569998 5664 5544
No 3
>d2a7ya1 b.34.6.3 (A:1-80) Hypothetical protein Rv2302/MT2359 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=14.14 E-value=36 Score=26.85 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=12.0
Q ss_pred cEEEe-CCCceeeeec
Q 008474 256 RFVRW-SDGSLQLQIG 270 (564)
Q Consensus 256 RIVRW-SDGSlSL~IG 270 (564)
-+||| .||-.+|..=
T Consensus 37 Y~VRw~ddGHe~lv~P 52 (80)
T d2a7ya1 37 YVVRWLVNGHETTVYP 52 (80)
T ss_dssp EEEEETTTTEEEEECC
T ss_pred EEEEeCCCCcEEEEec
Confidence 48999 7998888653
No 4
>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=13.21 E-value=69 Score=23.29 Aligned_cols=30 Identities=7% Similarity=0.046 Sum_probs=16.9
Q ss_pred ceEEEeeecCCCCCceecccccEEEeCCCceeee
Q 008474 235 NIVRWRTVKNKDGMTSYESNARFVRWSDGSLQLQ 268 (564)
Q Consensus 235 NTIRWR~~~d~dG~~~kESNARIVRWSDGSlSL~ 268 (564)
.+|.|.+. |..+..+.-..+..+++..+|.
T Consensus 32 p~v~W~~~----~~~i~~~~~~~~~~~~~~~~L~ 61 (93)
T d1wiua_ 32 PTATWTVG----DSGAALAPELLVDAKSSTTSIF 61 (93)
T ss_dssp CEEEEECS----SSSCBCSTTSEEEEETTEEEEE
T ss_pred CeEEEEee----eeeceeeeeeeecccccceeec
Confidence 57999974 4444444444445555555554
No 5
>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}
Probab=12.89 E-value=1.8e+02 Score=21.04 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=17.9
Q ss_pred ceEEEeeecCCCCCceecccccEEE--eCCCceeeeec
Q 008474 235 NIVRWRTVKNKDGMTSYESNARFVR--WSDGSLQLQIG 270 (564)
Q Consensus 235 NTIRWR~~~d~dG~~~kESNARIVR--WSDGSlSL~IG 270 (564)
.+|.|.++ |..+. .|.++.. =.+|..+|.|-
T Consensus 34 p~v~W~k~----~~~i~-~~~~~~~~~~~~~~~~L~I~ 66 (98)
T d1g1ca_ 34 PECEWYKN----GVKIE-RSDRIYWYWPEDNVCELVIR 66 (98)
T ss_dssp CEEEEEET----TEECC-CCSSEEEEEEETTEEEEEEC
T ss_pred CeEEEEeC----ceEEe-eeeeeEEEeccceEEEEEec
Confidence 57999653 45444 4445443 24666677663
No 6
>d1f3ua_ b.65.1.1 (A:) TFIIF beta subunit, Rap30 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.42 E-value=1.1e+02 Score=24.88 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=28.6
Q ss_pred eeeeccccccCCceEEEeccCceeEEeeeecceEEeecC
Q 008474 274 LDITVQDAQHDQAHLFLRHGKGILQSQGRILKKMRFIPS 312 (564)
Q Consensus 274 FDI~~~~l~~~d~hLyvrh~s~lLQ~qg~It~kLtfrPt 312 (564)
|++..+.....+.|+|.-+.++-|-..|.|..++-.||+
T Consensus 80 y~l~~~~~~~q~~~VFSe~~~~k~~~EG~V~~k~d~RPa 118 (118)
T d1f3ua_ 80 HPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPA 118 (118)
T ss_dssp EEEEEECCTTSEEEEEEEETTCCEEEEEEEEEEEEECCC
T ss_pred hcEecccccCCceEEEEecCCCcEEEEEEEEEEeecCCC
Confidence 555444444456778877767777789999999999996
No 7
>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.59 E-value=60 Score=23.97 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=20.6
Q ss_pred cceEEEeeecCCCCCceecccccEEEeCCC-ceeeeec
Q 008474 234 NNIVRWRTVKNKDGMTSYESNARFVRWSDG-SLQLQIG 270 (564)
Q Consensus 234 eNTIRWR~~~d~dG~~~kESNARIVRWSDG-SlSL~IG 270 (564)
..+|.|-+. |..+..|+.++.-+.+| ..+|.|-
T Consensus 34 ~~~v~W~k~----g~~i~~~~~~~~~~~~~~~~~L~I~ 67 (94)
T d1pd6a_ 34 DAEVKWLKN----GQEIQMSGSKYIFESIGAKRTLTIS 67 (94)
T ss_dssp SSCCEEEES----SSEECCCSSSSEEEEETTEEEEEEC
T ss_pred CceEEEEEc----CccceeeeeeEeeeccCCeEEeecC
Confidence 356889764 67777777666555554 4555554
No 8
>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.59 E-value=1.7e+02 Score=21.60 Aligned_cols=7 Identities=14% Similarity=0.340 Sum_probs=3.9
Q ss_pred EEEeCCC
Q 008474 257 FVRWSDG 263 (564)
Q Consensus 257 IVRWSDG 263 (564)
+|+|..+
T Consensus 54 ~i~~~~~ 60 (113)
T d1x5ia1 54 AIGYGIG 60 (113)
T ss_dssp EEEECSS
T ss_pred EEEeeec
Confidence 5566554
No 9
>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}
Probab=10.01 E-value=1.1e+02 Score=22.59 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=17.0
Q ss_pred ceEEEeeecCCCCCceecccccEE-Ee-CCCceeeeecc
Q 008474 235 NIVRWRTVKNKDGMTSYESNARFV-RW-SDGSLQLQIGN 271 (564)
Q Consensus 235 NTIRWR~~~d~dG~~~kESNARIV-RW-SDGSlSL~IGn 271 (564)
-+|.|.+. |..+. ++.++. .. .+|..+|.|-+
T Consensus 38 p~v~W~k~----~~~i~-~~~~~~~~~~~~~~~~L~I~~ 71 (102)
T d1fhga_ 38 PEVMWFKD----DNPVK-ESRHFQIDYDEEGNCSLTISE 71 (102)
T ss_dssp CEEEEEET----TEECC-CSSSEEEEECTTCEEEEEESS
T ss_pred CeEEEEee----ecccc-ceeeEeEEEecCceeeeEecC
Confidence 47999874 44443 334333 23 34556666543
No 10
>d3ec9a1 d.17.4.10 (A:10-139) Uncharacterized protein BTHI0051 {Burkholderia thailandensis [TaxId: 57975]}
Probab=9.80 E-value=1e+02 Score=23.09 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=21.4
Q ss_pred EEeeecCCCCCceecccccEEEeCCCcee
Q 008474 238 RWRTVKNKDGMTSYESNARFVRWSDGSLQ 266 (564)
Q Consensus 238 RWR~~~d~dG~~~kESNARIVRWSDGSlS 266 (564)
+|+....++|..+.-..+.+++|.||-++
T Consensus 85 ~~~~~~~~tG~~~~~~~~~~~~~~dGkI~ 113 (130)
T d3ec9a1 85 RYSGTYRRTGKSFECRVAHVWRVDAGKIV 113 (130)
T ss_dssp EEEEEETTTCCEEEEEEEEEEEEETTEEE
T ss_pred EEEEEEeCCCCEEEEEEEEEEEEECCEEE
Confidence 34433346788888888999999999655
Done!