Query 008476
Match_columns 564
No_of_seqs 439 out of 2850
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 12:39:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008476.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008476hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0504 PyrG CTP synthase (UTP 100.0 2E-210 3E-215 1639.8 47.1 530 1-552 1-532 (533)
2 PLN02327 CTP synthase 100.0 2E-205 3E-210 1648.0 50.6 548 1-549 1-549 (557)
3 KOG2387 CTP synthase (UTP-ammo 100.0 6E-206 1E-210 1575.3 43.1 549 1-549 1-550 (585)
4 PRK05380 pyrG CTP synthetase; 100.0 3E-196 8E-201 1573.5 50.0 528 1-550 2-530 (533)
5 TIGR00337 PyrG CTP synthase. C 100.0 1E-194 3E-199 1561.5 50.3 524 1-545 1-525 (525)
6 PF06418 CTP_synth_N: CTP synt 100.0 7E-142 2E-146 1054.6 17.5 276 1-284 1-276 (276)
7 cd03113 CTGs CTP synthetase (C 100.0 7E-133 2E-137 983.8 22.9 255 2-262 1-255 (255)
8 PRK06186 hypothetical protein; 100.0 5.2E-62 1.1E-66 482.3 23.5 228 297-548 1-228 (229)
9 COG0505 CarA Carbamoylphosphat 100.0 6.2E-48 1.3E-52 396.0 16.4 280 202-550 67-366 (368)
10 cd01746 GATase1_CTP_Synthase T 100.0 7.8E-46 1.7E-50 370.9 22.7 234 298-543 1-235 (235)
11 PRK12564 carbamoyl phosphate s 100.0 7E-42 1.5E-46 360.7 16.8 275 203-546 69-360 (360)
12 TIGR01368 CPSaseIIsmall carbam 100.0 8.6E-42 1.9E-46 359.6 17.0 277 202-547 64-357 (358)
13 PRK12838 carbamoyl phosphate s 100.0 9.1E-41 2E-45 351.3 18.1 276 203-549 67-353 (354)
14 CHL00197 carA carbamoyl-phosph 100.0 1.7E-39 3.6E-44 344.1 15.0 280 202-550 70-378 (382)
15 PLN02771 carbamoyl-phosphate s 100.0 3.1E-39 6.7E-44 343.2 15.3 268 202-539 120-415 (415)
16 KOG0370 Multifunctional pyrimi 100.0 7E-34 1.5E-38 314.3 16.1 295 178-549 50-355 (1435)
17 PF00117 GATase: Glutamine ami 99.9 9.8E-27 2.1E-31 224.5 14.0 181 314-545 11-192 (192)
18 COG0118 HisH Glutamine amidotr 99.9 2.1E-26 4.6E-31 222.0 15.3 187 298-546 2-203 (204)
19 cd01744 GATase1_CPSase Small c 99.9 5.6E-26 1.2E-30 218.3 18.2 176 300-543 1-178 (178)
20 COG2071 Predicted glutamine am 99.9 2.4E-25 5.2E-30 219.8 18.7 191 315-549 30-241 (243)
21 PLN02335 anthranilate synthase 99.9 3.1E-25 6.7E-30 220.7 19.1 197 295-549 16-216 (222)
22 PRK08007 para-aminobenzoate sy 99.9 4.2E-25 9E-30 214.2 17.6 183 300-544 2-186 (187)
23 PRK05670 anthranilate synthase 99.9 1.7E-24 3.6E-29 209.9 18.8 185 300-546 2-188 (189)
24 PRK11366 puuD gamma-glutamyl-g 99.9 5.6E-24 1.2E-28 215.7 20.6 211 297-550 7-248 (254)
25 TIGR00566 trpG_papA glutamine 99.9 4.4E-24 9.6E-29 207.1 18.8 184 300-544 2-187 (188)
26 COG0512 PabA Anthranilate/para 99.9 5.6E-24 1.2E-28 204.2 18.6 188 298-545 2-190 (191)
27 CHL00101 trpG anthranilate syn 99.9 3.8E-24 8.2E-29 207.8 17.6 186 300-546 2-189 (190)
28 PRK06895 putative anthranilate 99.9 8.4E-24 1.8E-28 205.2 19.8 186 298-545 2-188 (190)
29 PRK07649 para-aminobenzoate/an 99.9 6.2E-24 1.3E-28 207.4 17.8 187 300-548 2-190 (195)
30 TIGR00888 guaA_Nterm GMP synth 99.9 8.2E-24 1.8E-28 204.6 18.3 181 300-545 1-183 (188)
31 cd01743 GATase1_Anthranilate_S 99.9 2.7E-23 5.9E-28 200.2 17.9 183 300-543 1-184 (184)
32 PRK06774 para-aminobenzoate sy 99.9 2.4E-23 5.3E-28 202.1 17.7 182 300-544 2-190 (191)
33 PRK00758 GMP synthase subunit 99.9 6.8E-23 1.5E-27 197.6 18.9 181 300-548 2-183 (184)
34 PRK07765 para-aminobenzoate sy 99.9 9.2E-23 2E-27 201.9 19.2 190 298-546 1-192 (214)
35 cd01742 GATase1_GMP_Synthase T 99.9 6.3E-23 1.4E-27 196.5 16.1 181 300-543 1-181 (181)
36 PRK08857 para-aminobenzoate sy 99.9 1.6E-22 3.5E-27 196.8 18.3 185 300-545 2-192 (193)
37 TIGR01823 PabB-fungal aminodeo 99.9 3.2E-22 6.9E-27 228.9 19.2 199 296-550 4-208 (742)
38 PRK03619 phosphoribosylformylg 99.9 4.3E-22 9.3E-27 197.8 16.8 195 298-544 1-218 (219)
39 PF07722 Peptidase_C26: Peptid 99.9 1.5E-22 3.2E-27 200.8 12.0 171 314-527 27-217 (217)
40 PRK05637 anthranilate synthase 99.9 1.9E-21 4.1E-26 191.8 19.6 200 298-548 2-207 (208)
41 PRK13566 anthranilate synthase 99.9 9.9E-22 2.1E-26 223.7 19.3 194 295-547 524-719 (720)
42 TIGR01815 TrpE-clade3 anthrani 99.9 1.1E-21 2.5E-26 223.0 19.4 194 296-548 515-710 (717)
43 PLN02347 GMP synthetase 99.9 2.9E-21 6.2E-26 213.8 19.7 184 299-546 12-202 (536)
44 PRK13170 hisH imidazole glycer 99.9 3.6E-21 7.9E-26 187.9 17.0 187 298-544 1-195 (196)
45 cd01745 GATase1_2 Subgroup of 99.9 9.4E-21 2E-25 183.9 16.0 149 314-543 22-189 (189)
46 CHL00188 hisH imidazole glycer 99.9 1.2E-20 2.7E-25 186.3 16.7 198 298-546 2-210 (210)
47 PRK13146 hisH imidazole glycer 99.8 2.6E-20 5.5E-25 183.8 17.4 196 298-546 2-208 (209)
48 PRK14607 bifunctional glutamin 99.8 1.5E-20 3.3E-25 208.8 17.7 186 300-547 2-190 (534)
49 PRK00074 guaA GMP synthase; Re 99.8 4.6E-20 1E-24 203.9 17.5 183 298-545 4-188 (511)
50 PRK14004 hisH imidazole glycer 99.8 1E-19 2.3E-24 179.7 17.2 188 300-545 2-209 (210)
51 PRK13142 hisH imidazole glycer 99.8 2.5E-20 5.5E-25 181.4 12.5 174 300-544 2-186 (192)
52 cd01747 GATase1_Glutamyl_Hydro 99.8 1.1E-19 2.4E-24 186.2 17.2 191 315-551 24-251 (273)
53 PRK13141 hisH imidazole glycer 99.8 1.5E-19 3.2E-24 177.3 17.1 193 299-547 1-203 (205)
54 PLN02889 oxo-acid-lyase/anthra 99.8 2.6E-19 5.7E-24 206.3 18.9 195 297-550 81-339 (918)
55 PRK13143 hisH imidazole glycer 99.8 8.4E-19 1.8E-23 171.7 19.0 195 298-547 1-199 (200)
56 PRK13152 hisH imidazole glycer 99.8 5.3E-19 1.1E-23 173.2 17.1 186 300-544 2-200 (201)
57 cd01748 GATase1_IGP_Synthase T 99.8 3.9E-19 8.5E-24 173.3 16.0 184 300-543 1-198 (198)
58 PRK09522 bifunctional glutamin 99.8 9.5E-19 2E-23 193.9 18.6 187 298-548 2-192 (531)
59 PRK13181 hisH imidazole glycer 99.8 8.8E-19 1.9E-23 171.2 15.7 186 300-544 2-198 (199)
60 cd01741 GATase1_1 Subgroup of 99.8 2.3E-18 5E-23 166.1 16.5 139 359-543 43-188 (188)
61 PLN02832 glutamine amidotransf 99.8 2.6E-18 5.6E-23 173.1 16.6 201 298-548 2-216 (248)
62 PRK06490 glutamine amidotransf 99.8 8.9E-18 1.9E-22 169.1 19.0 181 296-544 6-191 (239)
63 PRK13525 glutamine amidotransf 99.8 6.8E-18 1.5E-22 164.1 17.3 180 298-548 2-189 (189)
64 PRK09065 glutamine amidotransf 99.8 3.2E-18 7E-23 172.0 15.5 132 359-530 51-190 (237)
65 PRK13527 glutamine amidotransf 99.8 9.5E-18 2.1E-22 164.1 17.9 192 298-548 1-199 (200)
66 COG0518 GuaA GMP synthase - Gl 99.8 3E-18 6.6E-23 167.7 13.9 181 299-544 3-191 (198)
67 PLN02617 imidazole glycerol ph 99.8 1.4E-17 3E-22 184.4 19.5 196 296-548 5-212 (538)
68 TIGR01855 IMP_synth_hisH imida 99.8 9.7E-18 2.1E-22 163.7 15.8 185 300-545 1-196 (196)
69 PRK07053 glutamine amidotransf 99.8 1.4E-17 3E-22 167.2 17.1 171 299-531 4-183 (234)
70 PRK05665 amidotransferase; Pro 99.8 2.5E-17 5.5E-22 165.9 18.6 134 359-532 54-192 (240)
71 TIGR01737 FGAM_synth_I phospho 99.8 2.8E-17 6.1E-22 164.1 17.8 193 298-545 1-226 (227)
72 PRK07567 glutamine amidotransf 99.7 3.3E-17 7.1E-22 165.2 16.0 132 359-531 48-195 (242)
73 TIGR03800 PLP_synth_Pdx2 pyrid 99.7 9E-17 1.9E-21 155.7 15.5 176 299-544 1-184 (184)
74 KOG1224 Para-aminobenzoate (PA 99.7 2.1E-16 4.6E-21 168.6 15.7 196 296-549 13-220 (767)
75 KOG0026 Anthranilate synthase, 99.7 3.8E-16 8.3E-21 145.7 13.9 193 299-548 20-216 (223)
76 PRK08250 glutamine amidotransf 99.7 1.6E-15 3.4E-20 152.4 17.3 130 359-530 42-184 (235)
77 KOG0623 Glutamine amidotransfe 99.6 7.2E-15 1.6E-19 150.3 12.5 191 300-544 4-206 (541)
78 cd01749 GATase1_PB Glutamine A 99.6 9.5E-15 2.1E-19 141.2 12.8 167 311-543 8-183 (183)
79 PRK01077 cobyrinic acid a,c-di 99.5 3.1E-11 6.7E-16 132.2 30.6 89 297-408 245-339 (451)
80 PRK01175 phosphoribosylformylg 99.5 2.4E-12 5.3E-17 131.3 18.4 213 297-547 3-258 (261)
81 PRK13526 glutamine amidotransf 99.4 1.7E-12 3.6E-17 125.1 13.6 81 298-407 3-88 (179)
82 KOG1622 GMP synthase [Nucleoti 99.4 7.7E-13 1.7E-17 139.8 10.4 136 361-543 58-201 (552)
83 COG0047 PurL Phosphoribosylfor 99.4 4E-11 8.6E-16 118.2 20.5 196 297-545 2-229 (231)
84 cd01740 GATase1_FGAR_AT Type 1 99.4 1.8E-11 3.9E-16 123.3 16.6 178 312-532 11-218 (238)
85 KOG3179 Predicted glutamine sy 99.4 4.1E-12 8.8E-17 122.6 11.1 137 358-531 55-197 (245)
86 PRK05368 homoserine O-succinyl 99.3 4.5E-11 9.7E-16 124.0 18.0 196 296-531 34-241 (302)
87 KOG1559 Gamma-glutamyl hydrola 99.3 2.2E-12 4.8E-17 127.2 7.8 180 315-533 81-275 (340)
88 TIGR00379 cobB cobyrinic acid 99.3 5.5E-10 1.2E-14 122.4 23.1 89 297-408 244-338 (449)
89 PRK00784 cobyric acid synthase 99.2 4.2E-10 9.1E-15 124.5 19.2 85 297-408 251-342 (488)
90 TIGR00313 cobQ cobyric acid sy 99.2 5E-10 1.1E-14 123.4 18.3 305 4-407 1-335 (475)
91 COG0311 PDX2 Predicted glutami 99.2 2.5E-10 5.3E-15 109.3 12.5 82 298-407 1-88 (194)
92 PF01174 SNO: SNO glutamine am 99.1 1.6E-09 3.6E-14 104.5 12.8 73 309-405 4-82 (188)
93 PRK13896 cobyrinic acid a,c-di 99.0 2.1E-08 4.5E-13 109.3 20.5 293 1-407 1-324 (433)
94 PF13507 GATase_5: CobB/CobQ-l 98.9 1.2E-08 2.6E-13 104.2 12.3 197 297-533 1-233 (259)
95 TIGR01857 FGAM-synthase phosph 98.8 1.3E-07 2.8E-12 113.4 19.6 220 296-544 976-1237(1239)
96 PRK05297 phosphoribosylformylg 98.8 1E-07 2.2E-12 115.8 18.3 197 296-533 1034-1263(1290)
97 KOG3210 Imidazoleglycerol-phos 98.7 1.7E-07 3.7E-12 88.4 13.6 89 298-408 12-108 (226)
98 cd01750 GATase1_CobQ Type 1 gl 98.7 3.2E-08 6.9E-13 96.7 7.5 83 300-408 1-89 (194)
99 PF00988 CPSase_sm_chain: Carb 98.7 1E-09 2.2E-14 100.4 -3.0 65 202-267 66-130 (131)
100 PLN03206 phosphoribosylformylg 98.7 3.6E-07 7.8E-12 110.4 16.6 204 295-533 1035-1276(1307)
101 TIGR01735 FGAM_synt phosphorib 98.6 3.4E-07 7.4E-12 111.1 15.8 195 296-532 1054-1283(1310)
102 PRK06278 cobyrinic acid a,c-di 98.5 2.6E-07 5.6E-12 101.9 7.9 78 298-407 1-81 (476)
103 cd03130 GATase1_CobB Type 1 gl 98.5 3.8E-07 8.2E-12 89.5 8.0 75 312-408 12-92 (198)
104 PHA03366 FGAM-synthase; Provis 98.2 2.2E-05 4.7E-10 95.8 16.0 91 294-405 1025-1131(1304)
105 TIGR01739 tegu_FGAM_synt herpe 98.1 3.7E-05 8.1E-10 93.3 16.3 90 295-405 927-1032(1202)
106 COG1797 CobB Cobyrinic acid a, 98.0 0.0011 2.3E-08 72.0 23.1 87 298-407 246-339 (451)
107 cd01653 GATase1 Type 1 glutami 98.0 3.8E-05 8.2E-10 64.1 8.5 76 312-404 13-92 (115)
108 cd03144 GATase1_ScBLP_like Typ 97.8 2.2E-05 4.8E-10 70.8 5.1 84 300-404 2-90 (114)
109 cd03146 GAT1_Peptidase_E Type 97.8 3.4E-05 7.3E-10 76.5 6.8 93 295-405 29-128 (212)
110 PF04204 HTS: Homoserine O-suc 97.8 0.00023 5E-09 74.0 13.0 194 296-531 33-240 (298)
111 cd03131 GATase1_HTS Type 1 glu 97.7 0.00023 5E-09 68.9 10.1 52 360-411 60-118 (175)
112 PF07685 GATase_3: CobB/CobQ-l 97.7 4.8E-05 1.1E-09 72.0 4.7 51 358-408 3-59 (158)
113 cd03128 GAT_1 Type 1 glutamine 97.6 0.00019 4.2E-09 57.1 6.6 75 313-404 14-92 (92)
114 TIGR01001 metA homoserine O-su 97.6 0.0014 3.1E-08 67.9 14.4 195 296-531 34-240 (300)
115 TIGR01382 PfpI intracellular p 97.0 0.0029 6.3E-08 59.5 8.4 45 362-406 60-107 (166)
116 PRK11780 isoprenoid biosynthes 96.8 0.0022 4.8E-08 64.1 6.0 49 360-408 83-145 (217)
117 cd03134 GATase1_PfpI_like A ty 96.8 0.0079 1.7E-07 56.5 9.2 46 361-406 61-109 (165)
118 cd03133 GATase1_ES1 Type 1 glu 96.7 0.003 6.6E-08 63.0 5.9 49 360-408 80-142 (213)
119 PRK05282 (alpha)-aspartyl dipe 96.4 0.009 1.9E-07 60.5 7.7 106 279-407 15-129 (233)
120 cd03169 GATase1_PfpI_1 Type 1 96.3 0.0053 1.1E-07 58.9 5.1 45 362-406 76-123 (180)
121 cd03132 GATase1_catalase Type 96.3 0.023 5E-07 52.2 8.8 102 298-406 2-110 (142)
122 COG0693 ThiJ Putative intracel 96.2 0.023 5E-07 54.7 8.8 102 298-405 3-113 (188)
123 PF09825 BPL_N: Biotin-protein 96.1 0.31 6.8E-06 52.5 17.6 91 299-405 2-96 (367)
124 COG1492 CobQ Cobyric acid synt 95.9 0.0086 1.9E-07 66.0 4.8 112 1-154 1-140 (486)
125 PRK00090 bioD dithiobiotin syn 95.6 0.026 5.6E-07 55.8 6.4 164 4-218 2-171 (222)
126 PRK11574 oxidative-stress-resi 95.6 0.14 2.9E-06 49.7 11.2 100 298-405 3-113 (196)
127 cd02037 MRP-like MRP (Multiple 95.5 0.067 1.5E-06 50.6 8.8 126 7-217 4-129 (169)
128 cd03137 GATase1_AraC_1 AraC tr 95.5 0.056 1.2E-06 51.7 8.3 48 359-406 61-111 (187)
129 PRK12374 putative dithiobiotin 95.4 0.067 1.5E-06 53.6 8.7 168 1-220 2-175 (231)
130 cd03147 GATase1_Ydr533c_like T 95.3 0.024 5.2E-07 57.2 5.3 48 360-407 92-143 (231)
131 KOG1907 Phosphoribosylformylgl 95.1 0.31 6.7E-06 57.0 13.6 91 296-406 1057-1162(1320)
132 PRK13768 GTPase; Provisional 95.0 0.16 3.4E-06 51.8 10.1 39 2-42 3-41 (253)
133 PF01965 DJ-1_PfpI: DJ-1/PfpI 95.0 0.017 3.6E-07 53.7 2.6 47 360-406 35-86 (147)
134 TIGR01383 not_thiJ DJ-1 family 94.8 0.13 2.9E-06 48.7 8.6 47 360-406 61-111 (179)
135 PRK04155 chaperone protein Hch 94.7 0.045 9.7E-07 57.1 5.3 46 360-405 145-194 (287)
136 cd01983 Fer4_NifH The Fer4_Nif 94.6 0.089 1.9E-06 43.4 6.0 33 4-38 2-34 (99)
137 TIGR01968 minD_bact septum sit 94.5 0.84 1.8E-05 45.5 13.7 40 2-42 2-41 (261)
138 COG3442 Predicted glutamine am 94.4 0.056 1.2E-06 53.9 4.9 153 361-548 51-217 (250)
139 PRK09435 membrane ATPase/prote 94.2 0.27 5.8E-06 52.4 9.9 62 3-66 58-127 (332)
140 cd03148 GATase1_EcHsp31_like T 94.1 0.077 1.7E-06 53.6 5.4 46 360-405 94-143 (232)
141 cd03129 GAT1_Peptidase_E_like 94.1 0.25 5.4E-06 48.7 8.9 106 283-406 17-129 (210)
142 cd03140 GATase1_PfpI_3 Type 1 94.0 0.087 1.9E-06 50.0 5.3 46 361-406 59-106 (170)
143 cd03141 GATase1_Hsp31_like Typ 94.0 0.075 1.6E-06 53.0 4.9 47 360-406 88-138 (221)
144 cd03138 GATase1_AraC_2 AraC tr 93.6 0.13 2.9E-06 49.6 5.8 47 360-406 67-119 (195)
145 cd03135 GATase1_DJ-1 Type 1 gl 93.6 0.1 2.2E-06 48.5 4.8 46 361-406 59-108 (163)
146 PRK14974 cell division protein 93.5 1.2 2.5E-05 47.7 13.1 39 2-42 141-179 (336)
147 PRK11249 katE hydroperoxidase 93.4 0.45 9.8E-06 55.6 10.4 105 296-406 596-706 (752)
148 PRK05632 phosphate acetyltrans 93.2 0.62 1.3E-05 54.3 11.4 37 1-38 2-38 (684)
149 cd00550 ArsA_ATPase Oxyanion-t 92.9 0.37 8E-06 49.1 8.0 39 2-42 1-39 (254)
150 TIGR00750 lao LAO/AO transport 92.8 0.63 1.4E-05 48.6 9.8 44 1-46 34-77 (300)
151 PRK10867 signal recognition pa 92.7 1.7 3.6E-05 48.1 13.3 39 2-42 101-140 (433)
152 TIGR00064 ftsY signal recognit 92.4 2.6 5.7E-05 43.6 13.6 39 2-42 73-111 (272)
153 cd03139 GATase1_PfpI_2 Type 1 92.2 0.19 4.2E-06 47.7 4.6 46 360-405 60-108 (183)
154 cd03136 GATase1_AraC_ArgR_like 92.0 0.25 5.5E-06 47.3 5.1 46 360-405 62-109 (185)
155 TIGR03371 cellulose_yhjQ cellu 91.6 0.98 2.1E-05 44.8 9.1 41 1-42 1-41 (246)
156 PF13278 DUF4066: Putative ami 91.3 0.22 4.8E-06 46.8 3.9 48 359-406 58-108 (166)
157 cd03114 ArgK-like The function 90.9 1.4 3E-05 41.2 8.8 38 4-43 2-39 (148)
158 TIGR01969 minD_arch cell divis 90.6 1.2 2.6E-05 44.2 8.6 34 9-42 7-40 (251)
159 PRK11889 flhF flagellar biosyn 90.4 4.8 0.0001 44.3 13.4 143 2-216 242-384 (436)
160 cd03115 SRP The signal recogni 89.6 5.9 0.00013 37.3 12.1 37 4-42 3-39 (173)
161 TIGR00347 bioD dethiobiotin sy 89.2 1.8 4E-05 40.5 8.2 155 10-216 5-165 (166)
162 COG1897 MetA Homoserine trans- 89.1 8 0.00017 39.8 12.9 195 296-531 34-241 (307)
163 PHA02518 ParA-like protein; Pr 89.1 2.2 4.7E-05 41.2 8.9 33 11-43 9-41 (211)
164 COG0132 BioD Dethiobiotin synt 88.7 0.85 1.8E-05 46.0 5.8 184 1-231 2-187 (223)
165 PRK09393 ftrA transcriptional 88.3 0.71 1.5E-05 48.3 5.3 49 358-406 71-121 (322)
166 TIGR00959 ffh signal recogniti 88.3 3.6 7.8E-05 45.5 10.9 140 3-216 101-246 (428)
167 TIGR02069 cyanophycinase cyano 87.8 2.2 4.9E-05 43.6 8.4 108 283-405 16-130 (250)
168 PRK13849 putative crown gall t 87.6 6.7 0.00015 39.5 11.5 43 1-44 1-43 (231)
169 PRK14494 putative molybdopteri 86.7 1.2 2.6E-05 45.0 5.6 37 1-39 1-37 (229)
170 PRK10818 cell division inhibit 86.7 8.2 0.00018 39.1 11.7 40 2-42 3-42 (270)
171 PF13500 AAA_26: AAA domain; P 86.5 1.3 2.8E-05 43.0 5.5 164 2-218 1-167 (199)
172 cd02042 ParA ParA and ParB of 86.5 2.7 5.8E-05 36.1 7.0 36 7-42 4-39 (104)
173 TIGR03499 FlhF flagellar biosy 85.9 1.2 2.6E-05 46.2 5.3 40 2-43 195-236 (282)
174 cd02035 ArsA ArsA ATPase funct 85.1 5.1 0.00011 39.6 9.1 38 6-44 3-40 (217)
175 COG2894 MinD Septum formation 84.8 1.3 2.9E-05 44.8 4.6 38 2-40 3-40 (272)
176 KOG2764 Putative transcription 84.6 1.5 3.2E-05 44.3 4.9 44 361-404 66-113 (247)
177 CHL00072 chlL photochlorophyll 84.4 1.6 3.5E-05 45.4 5.4 43 1-46 1-43 (290)
178 PRK14493 putative bifunctional 84.1 2.3 4.9E-05 44.2 6.3 39 1-42 1-39 (274)
179 cd03116 MobB Molybdenum is an 83.4 2.9 6.4E-05 39.8 6.2 40 1-42 1-40 (159)
180 cd02029 PRK_like Phosphoribulo 83.0 1.9 4.1E-05 44.8 5.1 43 4-48 2-44 (277)
181 PRK13232 nifH nitrogenase redu 82.4 2.1 4.5E-05 43.8 5.2 43 1-45 1-43 (273)
182 cd03145 GAT1_cyanophycinase Ty 81.4 6 0.00013 39.4 7.9 108 283-405 17-131 (217)
183 COG0003 ArsA Predicted ATPase 81.2 2.6 5.7E-05 44.8 5.5 49 1-51 2-50 (322)
184 cd02040 NifH NifH gene encodes 81.1 2.8 6E-05 42.3 5.5 44 1-46 1-44 (270)
185 PRK13230 nitrogenase reductase 80.8 3 6.5E-05 42.7 5.7 45 1-47 1-45 (279)
186 PF02374 ArsA_ATPase: Anion-tr 79.5 2.6 5.7E-05 44.3 4.8 42 1-44 1-42 (305)
187 TIGR03815 CpaE_hom_Actino heli 79.4 16 0.00035 38.2 10.8 42 2-44 94-135 (322)
188 cd03109 DTBS Dethiobiotin synt 79.2 4.8 0.0001 36.9 5.9 37 3-42 2-38 (134)
189 TIGR00176 mobB molybdopterin-g 79.1 3.4 7.3E-05 39.1 5.0 35 4-40 2-36 (155)
190 PF01656 CbiA: CobQ/CobB/MinD/ 78.6 3.1 6.7E-05 39.4 4.6 36 10-45 6-41 (195)
191 TIGR01425 SRP54_euk signal rec 77.3 3.6 7.8E-05 45.5 5.2 40 2-43 101-140 (429)
192 PRK12724 flagellar biosynthesi 76.6 3.8 8.3E-05 45.2 5.2 41 2-44 224-265 (432)
193 PLN02929 NADH kinase 76.6 3.6 7.7E-05 43.4 4.8 65 309-400 32-96 (301)
194 TIGR01007 eps_fam capsular exo 76.6 4.9 0.00011 39.0 5.5 43 1-44 17-59 (204)
195 cd02033 BchX Chlorophyllide re 76.5 4.4 9.6E-05 43.2 5.5 42 1-44 31-72 (329)
196 PF03575 Peptidase_S51: Peptid 76.5 2 4.4E-05 40.2 2.7 73 315-403 4-81 (154)
197 cd02034 CooC The accessory pro 75.7 5.3 0.00011 35.9 5.0 36 4-41 2-37 (116)
198 cd02038 FleN-like FleN is a me 75.6 28 0.00061 31.8 10.0 38 4-42 2-39 (139)
199 PRK07667 uridine kinase; Provi 75.3 5.6 0.00012 38.6 5.5 40 3-44 19-58 (193)
200 CHL00175 minD septum-site dete 75.1 5.6 0.00012 40.7 5.7 45 2-47 16-61 (281)
201 cd02028 UMPK_like Uridine mono 75.0 5.6 0.00012 38.3 5.4 41 4-46 2-42 (179)
202 PRK10416 signal recognition pa 73.6 5.9 0.00013 42.0 5.6 39 2-42 115-153 (318)
203 PRK13233 nifH nitrogenase redu 73.1 6 0.00013 40.3 5.3 43 1-45 2-45 (275)
204 PF06564 YhjQ: YhjQ protein; 73.1 6 0.00013 40.5 5.2 46 1-47 1-52 (243)
205 TIGR03018 pepcterm_TyrKin exop 72.9 7.6 0.00016 38.0 5.8 42 1-43 35-77 (207)
206 PF06283 ThuA: Trehalose utili 71.6 8.9 0.00019 37.8 6.0 43 358-400 48-90 (217)
207 PRK01911 ppnK inorganic polyph 71.3 8.7 0.00019 40.3 6.1 95 298-401 1-98 (292)
208 cd01672 TMPK Thymidine monopho 70.7 7.2 0.00016 36.8 5.0 36 2-39 1-36 (200)
209 PRK04539 ppnK inorganic polyph 70.6 13 0.00028 39.2 7.1 94 298-401 6-102 (296)
210 PRK13235 nifH nitrogenase redu 70.5 7.6 0.00016 39.6 5.4 43 1-45 1-43 (274)
211 PRK10037 cell division protein 70.5 6.7 0.00014 39.5 4.9 41 1-42 1-41 (250)
212 PRK12726 flagellar biosynthesi 70.4 7.4 0.00016 42.6 5.4 39 2-42 207-245 (407)
213 PRK13185 chlL protochlorophyll 70.4 8.5 0.00018 39.0 5.7 42 2-45 3-44 (270)
214 cd02036 MinD Bacterial cell di 69.7 6.6 0.00014 36.6 4.4 34 9-42 6-39 (179)
215 PRK13236 nitrogenase reductase 68.9 8.5 0.00018 40.1 5.4 42 2-45 7-48 (296)
216 PRK13234 nifH nitrogenase redu 68.9 9.2 0.0002 39.8 5.7 43 1-45 4-46 (295)
217 PRK02155 ppnK NAD(+)/NADH kina 68.8 12 0.00025 39.3 6.4 90 298-401 6-97 (291)
218 KOG2825 Putative arsenite-tran 68.4 5.6 0.00012 41.1 3.8 43 2-46 20-62 (323)
219 PRK02649 ppnK inorganic polyph 68.3 12 0.00025 39.6 6.3 36 361-401 67-102 (305)
220 PRK14077 pnk inorganic polypho 68.0 14 0.0003 38.7 6.7 85 298-401 11-98 (287)
221 PRK03372 ppnK inorganic polyph 67.7 12 0.00025 39.7 6.1 95 298-401 6-106 (306)
222 PRK05703 flhF flagellar biosyn 67.2 8.2 0.00018 42.5 5.1 39 2-42 222-262 (424)
223 PRK10751 molybdopterin-guanine 67.0 12 0.00025 36.4 5.6 38 2-41 7-44 (173)
224 COG3340 PepE Peptidase E [Amin 67.0 12 0.00026 37.7 5.6 91 297-404 32-131 (224)
225 cd02117 NifH_like This family 66.7 10 0.00023 37.1 5.3 42 3-46 2-43 (212)
226 cd01830 XynE_like SGNH_hydrola 65.9 19 0.0004 34.9 6.8 87 92-186 21-131 (204)
227 PRK03378 ppnK inorganic polyph 65.8 17 0.00036 38.2 6.8 90 298-401 6-97 (292)
228 PLN02727 NAD kinase 65.7 12 0.00026 44.9 6.3 95 298-401 679-777 (986)
229 COG4285 Uncharacterized conser 65.5 24 0.00053 35.6 7.4 71 315-401 18-92 (253)
230 cd02032 Bchl_like This family 65.5 13 0.00029 37.6 6.0 40 4-45 3-42 (267)
231 PRK13869 plasmid-partitioning 65.4 9 0.0002 41.9 5.0 43 2-45 122-164 (405)
232 PRK13231 nitrogenase reductase 64.3 7.5 0.00016 39.3 3.9 42 1-45 2-43 (264)
233 PRK06731 flhF flagellar biosyn 64.2 1.5E+02 0.0033 30.7 13.4 141 3-216 77-218 (270)
234 PRK04885 ppnK inorganic polyph 63.1 16 0.00034 37.9 6.0 35 362-401 35-71 (265)
235 PRK14076 pnk inorganic polypho 63.0 21 0.00044 41.0 7.4 104 284-401 275-382 (569)
236 PF02572 CobA_CobO_BtuR: ATP:c 62.7 6.5 0.00014 38.2 2.9 29 11-39 9-39 (172)
237 PRK00771 signal recognition pa 62.5 12 0.00027 41.4 5.4 39 2-42 96-134 (437)
238 PRK03708 ppnK inorganic polyph 62.4 17 0.00038 37.7 6.2 87 298-401 1-90 (277)
239 PF00142 Fer4_NifH: 4Fe-4S iro 62.1 9.4 0.0002 39.6 4.1 32 12-43 9-40 (273)
240 TIGR01287 nifH nitrogenase iro 61.8 14 0.0003 37.7 5.3 41 3-45 2-42 (275)
241 cd06300 PBP1_ABC_sugar_binding 61.7 47 0.001 32.8 9.0 33 361-397 59-91 (272)
242 TIGR02016 BchX chlorophyllide 61.0 14 0.00031 38.6 5.3 41 2-44 1-41 (296)
243 PF10087 DUF2325: Uncharacteri 60.6 38 0.00083 29.1 7.1 79 299-396 1-80 (97)
244 PRK11670 antiporter inner memb 60.3 15 0.00033 39.7 5.5 44 2-46 108-151 (369)
245 PRK06696 uridine kinase; Valid 60.2 19 0.0004 35.7 5.8 41 3-45 24-64 (223)
246 COG4126 Hydantoin racemase [Am 59.3 13 0.00027 37.6 4.3 45 361-412 68-112 (230)
247 PRK07414 cob(I)yrinic acid a,c 58.7 8.7 0.00019 37.5 3.0 28 12-39 28-57 (178)
248 TIGR01281 DPOR_bchL light-inde 58.5 19 0.0004 36.5 5.6 35 11-45 8-42 (268)
249 cd03110 Fer4_NifH_child This p 56.8 73 0.0016 29.9 9.0 34 5-43 3-36 (179)
250 PF00485 PRK: Phosphoribulokin 56.7 14 0.00031 35.6 4.2 38 4-43 2-43 (194)
251 PRK14489 putative bifunctional 56.3 19 0.00042 38.7 5.5 39 1-41 205-243 (366)
252 COG1192 Soj ATPases involved i 56.2 17 0.00038 36.5 4.9 35 10-44 10-45 (259)
253 COG3155 ElbB Uncharacterized p 56.1 18 0.00039 34.9 4.5 51 361-411 84-148 (217)
254 PRK14075 pnk inorganic polypho 55.3 28 0.00061 35.7 6.2 72 298-401 1-72 (256)
255 PRK01184 hypothetical protein; 54.6 15 0.00032 34.9 3.9 28 1-34 1-28 (184)
256 PF01583 APS_kinase: Adenylyls 54.4 20 0.00043 34.3 4.6 36 3-40 4-39 (156)
257 PF13614 AAA_31: AAA domain; P 53.9 28 0.0006 31.8 5.4 40 2-42 1-40 (157)
258 PLN02935 Bifunctional NADH kin 53.4 27 0.00058 39.5 6.1 36 361-401 261-296 (508)
259 COG0540 PyrB Aspartate carbamo 53.3 56 0.0012 34.7 8.0 104 192-329 86-189 (316)
260 cd03794 GT1_wbuB_like This fam 53.0 2.5E+02 0.0054 28.1 17.2 42 2-43 1-43 (394)
261 PRK14495 putative molybdopteri 52.9 21 0.00046 39.7 5.1 39 1-41 1-39 (452)
262 PRK15453 phosphoribulokinase; 52.8 18 0.0004 38.0 4.4 48 2-51 6-53 (290)
263 COG1703 ArgK Putative periplas 52.7 17 0.00036 38.5 4.1 96 4-152 54-153 (323)
264 COG0521 MoaB Molybdopterin bio 52.2 67 0.0015 31.2 7.8 74 89-173 27-115 (169)
265 PF01513 NAD_kinase: ATP-NAD k 52.2 12 0.00026 38.7 3.0 38 359-401 73-110 (285)
266 PF02424 ApbE: ApbE family; I 52.0 11 0.00024 38.5 2.7 91 11-113 110-214 (254)
267 PRK13886 conjugal transfer pro 51.9 25 0.00055 35.9 5.2 39 4-42 4-42 (241)
268 COG4090 Uncharacterized protei 51.9 18 0.00038 33.7 3.6 42 358-399 81-124 (154)
269 PF03205 MobB: Molybdopterin g 51.7 26 0.00056 32.5 4.8 37 2-40 1-37 (140)
270 KOG4180 Predicted kinase [Gene 51.7 14 0.00031 39.3 3.3 62 310-397 74-135 (395)
271 PF00448 SRP54: SRP54-type pro 51.2 30 0.00065 34.0 5.5 40 2-43 2-41 (196)
272 PRK06179 short chain dehydroge 51.0 17 0.00037 36.3 3.8 34 2-41 5-38 (270)
273 PRK01231 ppnK inorganic polyph 49.5 38 0.00082 35.6 6.2 89 299-401 6-96 (295)
274 TIGR00041 DTMP_kinase thymidyl 49.2 31 0.00067 32.9 5.1 34 2-37 4-37 (195)
275 COG0529 CysC Adenylylsulfate k 49.0 27 0.00059 34.4 4.6 33 3-37 25-57 (197)
276 cd06267 PBP1_LacI_sugar_bindin 49.0 69 0.0015 30.8 7.7 31 361-397 54-84 (264)
277 PRK06953 short chain dehydroge 49.0 22 0.00049 34.4 4.2 34 1-40 1-34 (222)
278 TIGR01133 murG undecaprenyldip 48.9 25 0.00054 36.3 4.7 34 1-38 1-35 (348)
279 COG1348 NifH Nitrogenase subun 48.7 16 0.00034 37.5 3.1 30 13-42 11-40 (278)
280 PRK05693 short chain dehydroge 48.2 20 0.00043 36.0 3.8 32 1-38 1-32 (274)
281 PRK07102 short chain dehydroge 48.1 19 0.00041 35.3 3.6 34 1-40 1-34 (243)
282 PHA02519 plasmid partition pro 48.0 19 0.0004 39.3 3.7 34 13-46 117-151 (387)
283 PRK02006 murD UDP-N-acetylmura 47.1 29 0.00063 38.7 5.2 31 2-36 122-152 (498)
284 cd06312 PBP1_ABC_sugar_binding 46.9 85 0.0018 31.1 8.1 34 361-398 56-89 (271)
285 PRK12723 flagellar biosynthesi 46.9 31 0.00068 37.7 5.3 39 2-42 175-217 (388)
286 COG2109 BtuR ATP:corrinoid ade 46.7 18 0.0004 35.8 3.1 29 10-38 33-63 (198)
287 cd06320 PBP1_allose_binding Pe 46.5 92 0.002 30.8 8.3 33 361-397 56-88 (275)
288 cd01391 Periplasmic_Binding_Pr 46.1 69 0.0015 30.3 7.1 32 361-397 57-88 (269)
289 PRK04148 hypothetical protein; 46.0 22 0.00049 33.1 3.4 108 13-178 24-131 (134)
290 TIGR03029 EpsG chain length de 45.4 34 0.00074 34.8 5.0 40 2-42 104-143 (274)
291 PF14403 CP_ATPgrasp_2: Circul 45.3 89 0.0019 34.9 8.5 158 206-398 99-275 (445)
292 PRK06940 short chain dehydroge 45.1 29 0.00063 35.2 4.5 31 2-40 3-33 (275)
293 KOG3974 Predicted sugar kinase 44.9 66 0.0014 33.5 6.8 38 358-395 97-136 (306)
294 PRK05854 short chain dehydroge 44.8 22 0.00048 37.0 3.6 30 2-37 15-44 (313)
295 PRK03501 ppnK inorganic polyph 44.8 50 0.0011 34.2 6.1 35 361-400 38-74 (264)
296 PF09140 MipZ: ATPase MipZ; I 44.7 33 0.00071 35.5 4.7 40 3-42 1-40 (261)
297 PRK00561 ppnK inorganic polyph 44.3 19 0.00041 37.2 3.0 36 361-401 32-67 (259)
298 PF03698 UPF0180: Uncharacteri 44.3 34 0.00074 29.2 4.0 41 299-370 3-43 (80)
299 PRK07890 short chain dehydroge 44.0 27 0.00058 34.4 4.0 32 2-39 6-37 (258)
300 PRK06101 short chain dehydroge 43.9 25 0.00055 34.5 3.7 33 1-39 1-33 (240)
301 COG1763 MobB Molybdopterin-gua 43.6 62 0.0013 31.1 6.1 55 1-57 2-57 (161)
302 PRK04761 ppnK inorganic polyph 43.5 19 0.00042 36.9 2.8 37 360-401 23-59 (246)
303 PRK05439 pantothenate kinase; 43.4 38 0.00082 36.0 5.1 41 3-45 88-130 (311)
304 PRK06851 hypothetical protein; 43.4 39 0.00086 36.7 5.3 38 2-41 31-70 (367)
305 cd04728 ThiG Thiazole synthase 43.1 1E+02 0.0022 31.8 7.8 71 304-389 17-87 (248)
306 PRK06924 short chain dehydroge 43.0 36 0.00078 33.4 4.7 31 1-37 1-31 (251)
307 PRK06947 glucose-1-dehydrogena 42.8 28 0.00062 34.1 3.9 30 1-36 2-31 (248)
308 PRK08177 short chain dehydroge 42.6 37 0.0008 33.0 4.6 34 1-40 1-34 (225)
309 PRK06398 aldose dehydrogenase; 42.4 26 0.00057 35.0 3.6 30 2-37 7-36 (258)
310 KOG2708 Predicted metalloprote 42.4 78 0.0017 32.5 6.8 50 361-414 69-122 (336)
311 PRK12742 oxidoreductase; Provi 42.0 29 0.00063 33.7 3.8 29 2-36 7-35 (237)
312 PRK08303 short chain dehydroge 42.0 26 0.00056 36.5 3.6 30 2-37 9-38 (305)
313 PRK03846 adenylylsulfate kinas 41.4 42 0.0009 32.5 4.7 40 2-43 25-64 (198)
314 COG4977 Transcriptional regula 41.4 37 0.00079 36.4 4.6 49 359-407 73-124 (328)
315 PRK00208 thiG thiazole synthas 41.4 1.1E+02 0.0024 31.5 7.9 71 303-389 17-87 (250)
316 PRK07933 thymidylate kinase; V 41.1 49 0.0011 32.8 5.2 37 2-40 1-37 (213)
317 COG0061 nadF NAD kinase [Coenz 41.0 50 0.0011 34.4 5.5 35 361-400 54-88 (281)
318 PRK12481 2-deoxy-D-gluconate 3 40.9 28 0.0006 34.6 3.5 30 2-37 9-38 (251)
319 cd01836 FeeA_FeeB_like SGNH_hy 40.7 58 0.0013 30.7 5.6 59 119-184 54-116 (191)
320 COG0771 MurD UDP-N-acetylmuram 40.5 1.2E+02 0.0025 34.1 8.5 29 297-329 7-35 (448)
321 cd01538 PBP1_ABC_xylose_bindin 40.0 1.6E+02 0.0036 29.5 9.1 33 361-397 54-86 (288)
322 PRK07035 short chain dehydroge 39.9 31 0.00067 34.0 3.6 30 2-37 9-38 (252)
323 PRK09072 short chain dehydroge 39.9 31 0.00068 34.3 3.7 33 2-40 6-38 (263)
324 PRK08727 hypothetical protein; 39.7 21 0.00045 35.8 2.4 59 3-63 43-101 (233)
325 cd02023 UMPK Uridine monophosp 39.3 47 0.001 31.9 4.7 38 3-44 1-38 (198)
326 PRK12748 3-ketoacyl-(acyl-carr 39.2 35 0.00075 33.8 3.9 32 2-38 6-38 (256)
327 cd06301 PBP1_rhizopine_binding 39.2 1.3E+02 0.0029 29.4 8.1 33 361-397 55-87 (272)
328 cd06321 PBP1_ABC_sugar_binding 39.2 1.4E+02 0.0031 29.3 8.4 33 361-397 56-88 (271)
329 PRK09221 beta alanine--pyruvat 38.8 1.1E+02 0.0024 33.9 8.0 66 139-216 218-285 (445)
330 PRK04296 thymidine kinase; Pro 38.6 70 0.0015 31.0 5.8 38 2-45 3-42 (190)
331 KOG1252 Cystathionine beta-syn 38.6 19 0.00041 38.6 1.9 43 10-52 216-260 (362)
332 PRK05579 bifunctional phosphop 38.6 38 0.00081 37.2 4.3 37 2-38 189-235 (399)
333 PRK12829 short chain dehydroge 38.2 37 0.0008 33.5 3.9 33 2-40 12-44 (264)
334 PF08245 Mur_ligase_M: Mur lig 38.2 83 0.0018 29.7 6.2 26 13-38 4-29 (188)
335 PRK12828 short chain dehydroge 38.1 40 0.00087 32.4 4.1 34 2-41 8-41 (239)
336 cd03111 CpaE_like This protein 38.1 44 0.00095 29.1 3.9 33 11-43 8-41 (106)
337 PF13472 Lipase_GDSL_2: GDSL-l 37.6 43 0.00092 30.1 3.9 92 87-189 12-116 (179)
338 TIGR01500 sepiapter_red sepiap 37.6 41 0.00089 33.4 4.1 34 3-38 2-35 (256)
339 PLN02422 dephospho-CoA kinase 37.5 41 0.00089 34.2 4.1 28 1-34 1-28 (232)
340 TIGR03453 partition_RepA plasm 37.3 46 0.001 35.9 4.8 36 9-44 111-146 (387)
341 PRK09620 hypothetical protein; 37.2 45 0.00097 33.7 4.3 36 2-37 4-49 (229)
342 PRK08416 7-alpha-hydroxysteroi 37.1 34 0.00075 34.0 3.5 29 2-36 9-37 (260)
343 PRK11519 tyrosine kinase; Prov 36.8 55 0.0012 38.6 5.6 40 2-42 527-566 (719)
344 PLN02989 cinnamyl-alcohol dehy 36.8 51 0.0011 34.0 4.8 34 2-41 6-39 (325)
345 PRK08339 short chain dehydroge 36.7 38 0.00082 34.1 3.7 30 2-37 9-38 (263)
346 PRK05480 uridine/cytidine kina 36.6 62 0.0014 31.4 5.2 38 2-43 7-44 (209)
347 smart00852 MoCF_biosynth Proba 36.6 38 0.00082 30.8 3.4 70 314-395 21-90 (135)
348 PRK06197 short chain dehydroge 36.6 35 0.00076 35.0 3.6 30 2-37 17-46 (306)
349 cd00885 cinA Competence-damage 36.5 98 0.0021 29.7 6.4 77 314-405 22-99 (170)
350 PRK05786 fabG 3-ketoacyl-(acyl 36.5 39 0.00085 32.7 3.7 29 2-36 6-34 (238)
351 TIGR00455 apsK adenylylsulfate 36.4 61 0.0013 30.8 5.0 35 2-38 19-53 (184)
352 TIGR03325 BphB_TodD cis-2,3-di 36.4 39 0.00084 33.7 3.8 30 2-37 6-35 (262)
353 cd02019 NK Nucleoside/nucleoti 36.4 68 0.0015 25.7 4.5 32 4-39 2-33 (69)
354 PRK08703 short chain dehydroge 36.2 41 0.00089 32.8 3.9 30 2-37 7-36 (239)
355 CHL00162 thiG thiamin biosynth 36.2 1.6E+02 0.0034 30.7 7.9 73 303-389 23-95 (267)
356 PF13450 NAD_binding_8: NAD(P) 36.0 49 0.0011 26.7 3.6 38 14-54 2-39 (68)
357 PRK05876 short chain dehydroge 35.8 40 0.00087 34.2 3.8 30 2-37 7-36 (275)
358 COG3640 CooC CO dehydrogenase 35.7 44 0.00095 34.4 3.9 36 4-41 3-39 (255)
359 cd01575 PBP1_GntR Ligand-bindi 35.7 2.1E+02 0.0045 27.8 8.8 31 361-397 54-84 (268)
360 COG0489 Mrp ATPases involved i 35.6 58 0.0013 33.5 4.9 162 2-217 58-227 (265)
361 PRK08690 enoyl-(acyl carrier p 35.6 40 0.00088 33.8 3.8 30 2-36 7-37 (261)
362 PRK03333 coaE dephospho-CoA ki 35.6 43 0.00092 36.6 4.2 28 1-34 1-28 (395)
363 PRK06505 enoyl-(acyl carrier p 35.5 43 0.00093 34.0 3.9 31 2-37 8-39 (271)
364 PRK05717 oxidoreductase; Valid 35.4 39 0.00085 33.4 3.6 30 2-37 11-40 (255)
365 PRK13973 thymidylate kinase; P 35.2 74 0.0016 31.3 5.5 35 2-38 4-38 (213)
366 PRK05993 short chain dehydroge 35.0 41 0.00088 34.0 3.7 33 2-40 5-37 (277)
367 PRK12727 flagellar biosynthesi 35.0 56 0.0012 37.4 5.0 39 2-42 351-391 (559)
368 PRK05866 short chain dehydroge 34.8 38 0.00083 34.8 3.5 30 2-37 41-70 (293)
369 PRK01390 murD UDP-N-acetylmura 34.6 72 0.0016 35.1 5.8 62 2-73 115-178 (460)
370 PRK00698 tmk thymidylate kinas 34.6 69 0.0015 30.5 5.1 34 2-37 4-37 (205)
371 cd06318 PBP1_ABC_sugar_binding 34.6 1.9E+02 0.004 28.6 8.3 31 361-395 54-84 (282)
372 PRK13705 plasmid-partitioning 34.6 40 0.00087 36.7 3.8 34 12-45 116-150 (388)
373 PRK00889 adenylylsulfate kinas 34.5 74 0.0016 29.9 5.2 38 2-41 5-42 (175)
374 COG1214 Inactive homolog of me 34.5 48 0.001 33.3 4.0 39 361-399 57-97 (220)
375 cd06305 PBP1_methylthioribose_ 34.4 1.9E+02 0.0041 28.3 8.3 33 361-397 54-86 (273)
376 PRK07024 short chain dehydroge 34.2 42 0.00092 33.3 3.6 33 1-39 2-34 (257)
377 COG2022 ThiG Uncharacterized e 34.1 1.7E+02 0.0038 30.0 7.7 72 303-389 23-94 (262)
378 PRK08340 glucose-1-dehydrogena 34.0 40 0.00086 33.5 3.4 29 3-37 2-30 (259)
379 cd01537 PBP1_Repressors_Sugar_ 33.9 2E+02 0.0043 27.5 8.2 32 361-397 54-85 (264)
380 PF08497 Radical_SAM_N: Radica 33.8 34 0.00073 36.0 2.8 11 521-531 281-291 (302)
381 PRK06463 fabG 3-ketoacyl-(acyl 33.7 47 0.001 32.9 3.8 29 2-36 8-36 (255)
382 PRK09841 cryptic autophosphory 33.6 66 0.0014 37.9 5.6 40 2-42 532-571 (726)
383 PF12846 AAA_10: AAA-like doma 33.5 65 0.0014 32.3 4.9 35 3-41 3-37 (304)
384 TIGR01499 folC folylpolyglutam 33.4 54 0.0012 35.4 4.5 32 2-37 19-50 (397)
385 PRK14528 adenylate kinase; Pro 33.2 46 0.00099 32.1 3.5 25 1-27 1-25 (186)
386 PRK07831 short chain dehydroge 33.0 52 0.0011 32.7 4.0 31 2-37 18-48 (262)
387 COG0521 MoaB Molybdopterin bio 32.9 41 0.00089 32.6 3.1 70 314-395 30-100 (169)
388 cd06316 PBP1_ABC_sugar_binding 32.8 1.9E+02 0.0042 29.0 8.2 33 361-397 55-87 (294)
389 TIGR00073 hypB hydrogenase acc 32.7 2.2E+02 0.0048 27.6 8.4 52 14-67 31-84 (207)
390 PF13670 PepSY_2: Peptidase pr 32.6 51 0.0011 27.6 3.3 45 16-71 27-72 (83)
391 PLN02913 dihydrofolate synthet 32.4 31 0.00066 39.0 2.5 32 2-37 76-107 (510)
392 PRK06732 phosphopantothenate-- 32.4 60 0.0013 32.6 4.3 35 4-38 3-47 (229)
393 PRK08309 short chain dehydroge 32.3 71 0.0015 30.8 4.7 27 4-37 3-29 (177)
394 TIGR01012 Sa_S2_E_A ribosomal 32.2 1.8E+02 0.0038 29.0 7.4 77 298-398 62-138 (196)
395 TIGR02667 moaB_proteo molybden 32.2 2.9E+02 0.0063 26.3 8.8 33 361-393 62-94 (163)
396 PF14359 DUF4406: Domain of un 32.2 1.4E+02 0.0031 25.9 6.0 73 311-395 16-90 (92)
397 PRK06523 short chain dehydroge 32.2 58 0.0013 32.2 4.2 33 2-40 10-42 (260)
398 PF13407 Peripla_BP_4: Peripla 31.9 1.5E+02 0.0033 28.9 7.2 34 361-398 54-87 (257)
399 COG0300 DltE Short-chain dehyd 31.9 51 0.0011 34.2 3.8 15 490-504 173-187 (265)
400 PRK07806 short chain dehydroge 31.9 54 0.0012 32.1 3.9 29 2-36 7-35 (248)
401 PRK06720 hypothetical protein; 31.8 52 0.0011 31.4 3.6 30 2-37 17-46 (169)
402 cd06309 PBP1_YtfQ_like Peripla 31.8 1.8E+02 0.0039 28.7 7.7 33 361-397 54-86 (273)
403 COG0451 WcaG Nucleoside-diphos 31.7 56 0.0012 33.0 4.1 32 4-41 3-34 (314)
404 PRK05642 DNA replication initi 31.6 33 0.00072 34.4 2.4 60 3-64 47-106 (234)
405 PF09822 ABC_transp_aux: ABC-t 31.5 2.7E+02 0.0059 28.3 9.1 72 296-391 145-225 (271)
406 cd01451 vWA_Magnesium_chelatas 31.4 88 0.0019 29.6 5.1 59 365-423 102-172 (178)
407 PRK12859 3-ketoacyl-(acyl-carr 31.3 56 0.0012 32.5 3.9 31 2-37 7-38 (256)
408 PRK07814 short chain dehydroge 31.1 53 0.0012 32.7 3.8 34 2-41 11-44 (263)
409 PF03308 ArgK: ArgK protein; 31.0 57 0.0012 33.9 3.9 54 4-79 32-85 (266)
410 PRK02231 ppnK inorganic polyph 31.0 46 0.00099 34.6 3.3 36 361-401 41-76 (272)
411 PRK06603 enoyl-(acyl carrier p 30.9 54 0.0012 32.8 3.8 30 2-36 9-39 (260)
412 cd06299 PBP1_LacI_like_13 Liga 30.9 2.2E+02 0.0048 27.7 8.1 29 361-395 54-82 (265)
413 cd06282 PBP1_GntR_like_2 Ligan 30.9 2.6E+02 0.0056 27.1 8.6 33 361-398 54-86 (266)
414 PRK10310 PTS system galactitol 30.7 95 0.0021 26.8 4.8 38 2-42 4-42 (94)
415 PRK07985 oxidoreductase; Provi 30.7 55 0.0012 33.6 3.9 30 2-37 50-79 (294)
416 PRK07063 short chain dehydroge 30.7 56 0.0012 32.3 3.8 30 2-37 8-37 (260)
417 cd06310 PBP1_ABC_sugar_binding 30.6 2.7E+02 0.0058 27.3 8.7 33 361-397 56-88 (273)
418 PRK00421 murC UDP-N-acetylmura 30.5 1.8E+02 0.004 32.0 8.2 82 293-396 3-95 (461)
419 cd00886 MogA_MoaB MogA_MoaB fa 30.3 1.3E+02 0.0028 28.1 6.0 71 310-393 18-92 (152)
420 PRK02645 ppnK inorganic polyph 30.2 1.4E+02 0.0029 31.6 6.7 83 299-399 5-89 (305)
421 COG2403 Predicted GTPase [Gene 30.2 51 0.0011 36.0 3.5 31 9-39 133-163 (449)
422 PRK06182 short chain dehydroge 30.0 59 0.0013 32.5 3.9 31 2-38 4-34 (273)
423 PRK10017 colanic acid biosynth 30.0 2.7E+02 0.006 30.8 9.3 34 298-331 1-38 (426)
424 PRK09242 tropinone reductase; 30.0 55 0.0012 32.3 3.6 30 2-37 10-39 (257)
425 PLN00198 anthocyanidin reducta 30.0 79 0.0017 32.8 4.9 34 2-41 10-43 (338)
426 PTZ00451 dephospho-CoA kinase; 29.8 63 0.0014 33.0 4.0 28 1-34 1-29 (244)
427 TIGR01360 aden_kin_iso1 adenyl 29.8 65 0.0014 30.2 3.9 25 1-27 3-27 (188)
428 PRK05599 hypothetical protein; 29.7 47 0.001 32.9 3.1 29 2-37 1-29 (246)
429 cd05014 SIS_Kpsf KpsF-like pro 29.6 2.8E+02 0.006 24.3 7.8 39 360-400 45-83 (128)
430 KOG0635 Adenosine 5'-phosphosu 29.6 55 0.0012 31.6 3.3 31 3-35 33-63 (207)
431 PLN02778 3,5-epimerase/4-reduc 29.5 67 0.0015 33.2 4.3 28 3-36 11-38 (298)
432 PRK06761 hypothetical protein; 29.5 62 0.0013 33.9 4.0 33 2-36 4-36 (282)
433 PRK08267 short chain dehydroge 29.5 75 0.0016 31.4 4.5 31 1-37 1-31 (260)
434 PRK09186 flagellin modificatio 29.5 62 0.0013 31.8 3.9 30 2-37 5-34 (256)
435 TIGR00521 coaBC_dfp phosphopan 29.5 65 0.0014 35.2 4.3 37 2-38 186-232 (390)
436 PRK10653 D-ribose transporter 29.2 3.4E+02 0.0073 27.3 9.3 33 361-397 81-113 (295)
437 PRK05986 cob(I)alamin adenolsy 29.1 56 0.0012 32.3 3.4 27 13-39 30-58 (191)
438 PRK08993 2-deoxy-D-gluconate 3 29.1 58 0.0013 32.3 3.6 30 2-37 11-40 (253)
439 PF03668 ATP_bind_2: P-loop AT 29.1 61 0.0013 34.0 3.8 28 1-34 1-28 (284)
440 PRK08278 short chain dehydroge 29.0 57 0.0012 32.9 3.6 30 2-37 7-36 (273)
441 COG1660 Predicted P-loop-conta 28.9 46 0.001 34.7 2.8 21 1-23 1-21 (286)
442 PRK09271 flavodoxin; Provision 28.9 2.6E+02 0.0056 26.2 7.8 41 359-399 48-93 (160)
443 PLN02780 ketoreductase/ oxidor 28.9 51 0.0011 34.5 3.3 32 2-39 54-85 (320)
444 PF01695 IstB_IS21: IstB-like 28.9 72 0.0016 30.7 4.1 39 3-43 49-87 (178)
445 PF05690 ThiG: Thiazole biosyn 28.7 73 0.0016 32.7 4.1 73 303-389 15-87 (247)
446 PRK07677 short chain dehydroge 28.7 65 0.0014 31.8 3.9 31 2-38 2-32 (252)
447 PF07505 Gp37_Gp68: Phage prot 28.6 91 0.002 32.4 4.9 42 359-400 185-230 (261)
448 PF03437 BtpA: BtpA family; I 28.3 2.8E+02 0.0061 28.7 8.4 74 314-395 128-204 (254)
449 PRK12743 oxidoreductase; Provi 28.1 66 0.0014 31.8 3.8 30 1-36 2-31 (256)
450 TIGR03575 selen_PSTK_euk L-ser 28.1 83 0.0018 33.9 4.7 39 4-44 2-41 (340)
451 PRK06057 short chain dehydroge 28.0 65 0.0014 31.8 3.7 30 2-37 8-37 (255)
452 PRK00779 ornithine carbamoyltr 27.8 5E+02 0.011 27.4 10.4 66 296-370 151-225 (304)
453 PRK00081 coaE dephospho-CoA ki 27.8 78 0.0017 30.7 4.2 28 1-34 2-29 (194)
454 PRK06200 2,3-dihydroxy-2,3-dih 27.8 64 0.0014 32.0 3.7 31 2-38 7-37 (263)
455 PRK09730 putative NAD(P)-bindi 27.8 79 0.0017 30.7 4.3 30 1-36 1-30 (247)
456 cd01539 PBP1_GGBP Periplasmic 27.8 3.1E+02 0.0068 27.8 8.9 33 361-397 56-88 (303)
457 PF09152 DUF1937: Domain of un 27.7 48 0.001 30.3 2.4 37 359-395 76-112 (116)
458 PRK09701 D-allose transporter 27.7 3.3E+02 0.0071 27.9 9.0 33 361-397 81-113 (311)
459 PRK06125 short chain dehydroge 27.7 67 0.0015 31.8 3.8 32 2-39 8-39 (259)
460 PTZ00254 40S ribosomal protein 27.6 2.6E+02 0.0056 28.9 8.0 76 299-398 73-148 (249)
461 PRK10846 bifunctional folylpol 27.6 71 0.0015 34.8 4.2 32 2-37 50-81 (416)
462 PRK11840 bifunctional sulfur c 27.5 2.3E+02 0.0049 30.5 7.7 72 303-389 90-161 (326)
463 cd01536 PBP1_ABC_sugar_binding 27.5 3.4E+02 0.0073 26.1 8.7 33 361-397 54-86 (267)
464 PRK07453 protochlorophyllide o 27.5 63 0.0014 33.5 3.6 30 2-37 7-36 (322)
465 PRK07478 short chain dehydroge 27.5 67 0.0015 31.6 3.7 30 2-37 7-36 (254)
466 cd06319 PBP1_ABC_sugar_binding 27.4 4E+02 0.0086 26.1 9.3 33 361-397 54-86 (277)
467 PRK12825 fabG 3-ketoacyl-(acyl 27.3 84 0.0018 30.3 4.3 30 1-36 6-35 (249)
468 PRK01713 ornithine carbamoyltr 27.1 5.2E+02 0.011 27.7 10.5 102 191-329 85-186 (334)
469 smart00864 Tubulin Tubulin/Fts 27.0 1.1E+02 0.0023 29.8 4.9 106 102-224 53-158 (192)
470 PRK06997 enoyl-(acyl carrier p 26.9 73 0.0016 31.9 3.9 30 2-36 7-37 (260)
471 PLN02686 cinnamoyl-CoA reducta 26.7 88 0.0019 33.4 4.7 31 1-37 53-83 (367)
472 cd06302 PBP1_LsrB_Quorum_Sensi 26.7 3E+02 0.0065 27.9 8.5 32 361-396 55-86 (298)
473 COG1834 N-Dimethylarginine dim 26.6 95 0.0021 32.4 4.6 92 64-171 51-152 (267)
474 PF04016 DUF364: Domain of unk 26.6 61 0.0013 30.4 3.1 75 296-384 10-85 (147)
475 TIGR01289 LPOR light-dependent 26.6 66 0.0014 33.4 3.6 29 2-36 4-33 (314)
476 PRK07413 hypothetical protein; 26.4 56 0.0012 35.7 3.1 30 10-39 24-61 (382)
477 PRK06128 oxidoreductase; Provi 26.4 77 0.0017 32.5 4.1 30 2-37 56-85 (300)
478 PLN02884 6-phosphofructokinase 26.3 95 0.0021 34.3 4.9 59 352-412 131-206 (411)
479 PRK03094 hypothetical protein; 26.3 1.1E+02 0.0023 26.2 4.1 41 299-370 3-43 (80)
480 PLN02166 dTDP-glucose 4,6-dehy 26.2 84 0.0018 34.7 4.5 29 4-38 123-151 (436)
481 PRK07023 short chain dehydroge 26.1 88 0.0019 30.6 4.3 31 1-37 1-31 (243)
482 TIGR01472 gmd GDP-mannose 4,6- 26.1 80 0.0017 32.9 4.2 32 2-39 1-32 (343)
483 PRK06938 diaminobutyrate--2-ox 25.8 2.9E+02 0.0062 30.8 8.7 65 140-216 232-298 (464)
484 PRK10355 xylF D-xylose transpo 25.8 4.4E+02 0.0096 27.5 9.7 33 361-397 80-112 (330)
485 PRK07062 short chain dehydroge 25.8 76 0.0017 31.5 3.8 33 2-40 9-41 (265)
486 PRK12747 short chain dehydroge 25.7 78 0.0017 31.1 3.8 29 2-36 5-33 (252)
487 PRK09913 putative fructose-lik 25.7 29 0.00062 31.9 0.6 51 69-120 13-68 (148)
488 PRK08594 enoyl-(acyl carrier p 25.6 82 0.0018 31.5 4.0 31 2-37 8-39 (257)
489 COG4242 CphB Cyanophycinase an 25.6 1.4E+02 0.003 31.0 5.4 79 315-405 71-154 (293)
490 PLN02986 cinnamyl-alcohol dehy 25.5 88 0.0019 32.2 4.3 30 2-37 6-35 (322)
491 TIGR01419 nitro_reg_IIA PTS II 25.5 27 0.0006 31.9 0.5 43 77-120 26-69 (145)
492 PRK06196 oxidoreductase; Provi 25.4 74 0.0016 32.9 3.7 31 2-38 27-57 (315)
493 PF01266 DAO: FAD dependent ox 25.4 60 0.0013 33.1 3.0 27 14-40 5-31 (358)
494 PF04392 ABC_sub_bind: ABC tra 25.4 58 0.0013 33.5 2.9 102 279-396 115-216 (294)
495 cd01832 SGNH_hydrolase_like_1 25.3 1.4E+02 0.0031 27.7 5.4 46 138-185 66-116 (185)
496 cd06306 PBP1_TorT-like TorT-li 25.3 3.7E+02 0.008 26.5 8.7 32 361-397 56-87 (268)
497 PRK05884 short chain dehydroge 25.2 75 0.0016 31.0 3.6 30 1-37 1-30 (223)
498 PRK10675 UDP-galactose-4-epime 25.2 92 0.002 32.1 4.4 30 1-37 1-30 (338)
499 PRK06550 fabG 3-ketoacyl-(acyl 25.1 87 0.0019 30.3 4.0 32 2-39 6-37 (235)
500 PRK08589 short chain dehydroge 25.1 76 0.0017 31.9 3.7 30 2-37 7-36 (272)
No 1
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.6e-210 Score=1639.77 Aligned_cols=530 Identities=56% Similarity=0.927 Sum_probs=512.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtm~p~~hgev~v~~dg~e~dldlg~yerf~~~ 80 (564)
||||||||||+|||||||+|||||+|||+|||+||++|||||||||||||||||||||||||||+||||||||||||+|+
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYlNvDpGTMsP~qHGEVfVtdDG~EtDLDLGhYERF~~~ 80 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDV 80 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccceecCCCCCCcccCceEEECCCCccccccccchhhhcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 008476 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (564)
Q Consensus 81 ~~~~~~~~t~g~iy~~vi~ker~g~ylg~tvqviph~t~~i~~~i~~~~~~p~~~~~~~~d~~i~e~ggtvgdies~pf~ 160 (564)
+||++||+||||||++||+|||+|||||+|||||||||||||+||+++|+ .. +||||||||||||||||+|||
T Consensus 81 ~l~~~~niTtGkiY~~Vi~kER~GdYLG~TVQvIPHiT~eIk~~I~~~a~------~~-~DvvivEIGGTVGDIEslpFl 153 (533)
T COG0504 81 NLSKDNNITTGKIYSEVIEKERRGDYLGKTVQVIPHITDEIKDRIREAAD------ST-ADVVIVEIGGTVGDIESLPFL 153 (533)
T ss_pred CccccCCccccHHHHHHHHHHhcCCccCceeEECCCcchHHHHHHHHhcC------CC-CCEEEEEeCCceecccccHHH
Confidence 99999999999999999999999999999999999999999999999995 22 999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhhhhhhhCCCcccEEEEeeCCCCCcchhccccccCCCCCCC
Q 008476 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (564)
Q Consensus 161 ea~rq~~~~~~~~~~~~~h~~~vp~~~~~~e~ktkptq~svk~l~s~Gi~pd~lv~R~~~~l~~~~r~kisl~~~v~~~~ 240 (564)
||+||||.++|++|++|||+||||||+++||+||||||||||+|||+|||||++||||+++++.+.|+||||||+|++++
T Consensus 154 EAiRQ~~~e~g~~n~~fiH~tlvpyi~~~gE~KTKPTQhSVkeLR~iGI~PDiii~Rs~~~l~~~~~~KIAlfc~V~~~~ 233 (533)
T COG0504 154 EAIRQLRLELGRENVLFIHVTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILICRSERPLPEEERRKIALFCNVPEEA 233 (533)
T ss_pred HHHHHHHhhhCcccEEEEEEecceeecccCccCCCCchHHHHHHHhcCCCcceEEEecCCCCCHHHHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCcccccHHHHHhhhHHHHHHHcCCCCCCCccchHHHHHHHhhhcCCCCceEEEEEeccCCCcchHHHHHHHH
Q 008476 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320 (564)
Q Consensus 241 Vi~~~dvdtiy~vp~~L~~qG~~~~i~~~l~l~~~~~~~~~~~w~~~~~~~~~~~~~~~IavVGkY~~~~Day~SIi~aL 320 (564)
||+++|++|+|++|+.|++||+++.++++|+|+ .+.+++++|+++++++.++.++++||+||||.++.|||+|+++||
T Consensus 234 Vi~~~Dv~siY~vPl~l~~qgl~~~i~~~l~l~--~~~~dl~~W~~~v~~i~~~~~~v~IalVGKYv~l~DaY~Sv~EAL 311 (533)
T COG0504 234 VISAPDVESIYEVPLLLEKQGLDDYILERLNLN--APEPDLSEWKDLVDKIKNPKKEVTIALVGKYVELPDAYKSVIEAL 311 (533)
T ss_pred eEecccHHHHHHhHHHHHHcchHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCCCceEEEEEECCcCchhHHHHHHHHH
Confidence 999999999999999999999999999999997 467899999999999999888899999999999999999999999
Q ss_pred HHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhcc-CCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEeh
Q 008476 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK-GADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 399 (564)
Q Consensus 321 ~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~-~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGICL 399 (564)
+|+|+++.++|++.||+|+++++++.. .+. .+|||+||||||.|+++|++.+++|||||++|+|||||
T Consensus 312 ~hag~~~~~~v~i~wIdse~le~~~~~-----------~~~~~~dgIlVPGGFG~RG~eGkI~Ai~yAREn~iP~lGICl 380 (533)
T COG0504 312 KHAGIALGVKVNIKWIDSEDLEEENAA-----------ELEKLVDGILVPGGFGYRGVEGKIAAIRYARENNIPFLGICL 380 (533)
T ss_pred HhhhhhcCCceeeEEEccccccccchh-----------hhhhcCCEEEeCCCCCcCchHHHHHHHHHHHhcCCCEEEEch
Confidence 999999999999999999999875431 122 29999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCc-ccccCCceeecceeeEeecCCchhhhccCCceeEeeeec
Q 008476 400 GMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHR 478 (564)
Q Consensus 400 GmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~-~~~~GgtmrlG~~~v~l~~~~s~~~~iyg~~~~I~erh~ 478 (564)
|||++++||+|||+||++|+|+||++++++|||++|+|+. ...+|||||||+++|.+.++ |+++++|+ +..|.||||
T Consensus 381 GmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~~lGGTmRLG~y~~~l~~g-T~a~~lY~-~~~v~ERHR 458 (533)
T COG0504 381 GMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVVDLGGTMRLGAYPCRLKPG-TLAAKLYG-KDEIYERHR 458 (533)
T ss_pred hHHHHHHHHHHHhcCCccCcccccCCCCCCceEEeccccccCCcCCceeeccceeeecCCC-cHHHHHhC-CCeeeeecc
Confidence 9999999999999999999999999999999999999964 67799999999999999999 99999996 578999999
Q ss_pred eeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhccCCc
Q 008476 479 HRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGNISHLYFVCVC 552 (564)
Q Consensus 479 HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~~~~ 552 (564)
|||||||+|++.|+..|++|+|+++||.++|++|+++||||+|+||||||+|+|.+|||||.+|++||.++.++
T Consensus 459 HRYEvN~~y~~~le~~Gl~~sg~s~d~~lvEivE~~~hpfFv~~QfHPEf~SrP~~phPlf~~fv~Aa~~~~~~ 532 (533)
T COG0504 459 HRYEVNNDYRDQLEKAGLVFSGTSPDGGLVEIVELPDHPFFVATQFHPEFKSRPLRPHPLFVGFVKAALEYKKD 532 (533)
T ss_pred chhhcCHHHHHHHHhCCeEEEEEcCCCCeEEEEEcCCCceEEEEcccccccCCCCCCCccHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887643
No 2
>PLN02327 CTP synthase
Probab=100.00 E-value=1.6e-205 Score=1648.02 Aligned_cols=548 Identities=84% Similarity=1.348 Sum_probs=532.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtm~p~~hgev~v~~dg~e~dldlg~yerf~~~ 80 (564)
||||||||||+|||||||+|||||+|||+|||+|++||||||||||||||||||||||||||||+||||||||||||||+
T Consensus 1 mk~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDLDlG~YERFl~~ 80 (557)
T PLN02327 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80 (557)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeeecccccccCCCCCCCcccceEEEccCCccccccccchhhhcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 008476 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (564)
Q Consensus 81 ~~~~~~~~t~g~iy~~vi~ker~g~ylg~tvqviph~t~~i~~~i~~~~~~p~~~~~~~~d~~i~e~ggtvgdies~pf~ 160 (564)
+||++||+||||||++||+|||+|+|||||||||||||||||+||+++|++|||++..+|||||||||||||||||+||+
T Consensus 81 ~l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHitdeI~~~i~~~~~~~~~~~~~~~dv~i~EiGGTVGDiEs~pfl 160 (557)
T PLN02327 81 TLTRDNNITTGKIYQSVIEKERRGDYLGKTVQVVPHITDAIQEWIERVAKIPVDGKEGPADVCVIELGGTVGDIESMPFI 160 (557)
T ss_pred ccccccCCCcHHHHHHHHHHhhcCCcCCCeeEECCCcHHHHHHHHHHhccCCcccCCCCCCEEEEEeCceeecccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhhhhhhhCCCcccEEEEeeCCCCCcchhccccccCCCCCCC
Q 008476 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (564)
Q Consensus 161 ea~rq~~~~~~~~~~~~~h~~~vp~~~~~~e~ktkptq~svk~l~s~Gi~pd~lv~R~~~~l~~~~r~kisl~~~v~~~~ 240 (564)
||+||||+++|++|||||||||||||+++||+||||||||||+|||+|||||+|||||+.+++++.|+|||+||+|++++
T Consensus 161 EA~rQ~~~~~g~~n~~~iHvt~vp~l~~~gE~KTKPtQhsvk~Lr~~Gi~pd~l~~Rs~~~l~~~~~~Kia~fc~v~~~~ 240 (557)
T PLN02327 161 EALRQFSFRVGPGNFCLIHVSLVPVLGVVGEQKTKPTQHSVRGLRALGLTPHILACRSTKPLEENVKEKLSQFCHVPAEN 240 (557)
T ss_pred HHHHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCcccccHHHHHhhhHHHHHHHcCCCCCCCccchHHHHHHHhhhcCCCCceEEEEEeccCCCcchHHHHHHHH
Q 008476 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320 (564)
Q Consensus 241 Vi~~~dvdtiy~vp~~L~~qG~~~~i~~~l~l~~~~~~~~~~~w~~~~~~~~~~~~~~~IavVGkY~~~~Day~SIi~aL 320 (564)
||+++|++++|+||++|++||+++.|+++|+|+...+.+++.+|+++++++.++.+.++||+||||.++.|||.||.+||
T Consensus 241 Vi~~~d~~~iY~vPl~l~~q~l~~~i~~~l~l~~~~~~~~~~~W~~~~~~~~~~~~~v~IalVGKY~~l~DAY~Si~eAL 320 (557)
T PLN02327 241 ILNLHDVSNIWHVPLLLRDQKAHEAILKVLNLLSVAREPDLEEWTARAESCDNLTEPVRIAMVGKYTGLSDSYLSVLKAL 320 (557)
T ss_pred EEEcCCCchHhhhhHHHHHCCcHHHHHHHcCCCCCCCCCChHHHHHHHHHHhCCCCceEEEEEecccCCcHhHHHHHHHH
Confidence 99999999999999999999999999999999721245689999999999999888999999999999999999999999
Q ss_pred HHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehh
Q 008476 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (564)
Q Consensus 321 ~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGICLG 400 (564)
+|||+++.++|++.||+++++++++..++|++|+++|+.|+++|||++|||||+++.++++.++++|+++++|+||||+|
T Consensus 321 ~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGfG~~~~~G~i~ai~~are~~iP~LGIClG 400 (557)
T PLN02327 321 LHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGFGDRGVEGKILAAKYARENKVPYLGICLG 400 (557)
T ss_pred HHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCCCCcccccHHHHHHHHHHcCCCEEEEcHH
Confidence 99999999999999999999988777778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeEee-cCCchhhhccCCceeEeeeece
Q 008476 401 MQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ-IKDCKSAKLYGNRTFIDERHRH 479 (564)
Q Consensus 401 mQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l~-~~~s~~~~iyg~~~~I~erh~H 479 (564)
||+|+++||||++||+||+|+||++++++|||.+||+++...+|||||||.+++.+. ++ |++.++|+....|++||||
T Consensus 401 mQl~viefaRnvlG~~dAnS~Efdp~t~~pvI~~m~e~~~~~~GGtMRLG~~~~~~~~~~-S~l~~iYg~~~~VnerHrH 479 (557)
T PLN02327 401 MQIAVIEFARSVLGLKDANSTEFDPETPNPCVIFMPEGSKTHMGGTMRLGSRRTYFQTPD-CKSAKLYGNVSFVDERHRH 479 (557)
T ss_pred HHHHHHHHHHhhcCCcCCCccccCCCCCCCEEEEehhcccccCCceEECCCcccccCCCC-CHHHHHhCCccceeeeecc
Confidence 999999999999999999999999999999999999988889999999999999997 66 8999999755468999999
Q ss_pred eeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhcc
Q 008476 480 RYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGNISHLYFV 549 (564)
Q Consensus 480 rYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~ 549 (564)
||+||+++++.|++.|+.++|+++||.++|++|+++||||+|||||||+.++|.+++|||.+|++||.++
T Consensus 480 RYeVN~q~v~~le~~gL~vsa~s~dg~~IEaiE~~~~pffvGVQfHPE~~s~p~~~~pLF~~Fv~Aa~~~ 549 (557)
T PLN02327 480 RYEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPSHPFFVGVQFHPEFKSRPGKPSPLFLGLIAAASGQ 549 (557)
T ss_pred ccccCHHHHHHHhhcCcEEEEEcCCCCEEEEEEeCCCCEEEEEEcCCCCCCCCCCchHHHHHHHHHHHHh
Confidence 9999999999998899999999999988999999999999999999999999999999999999999764
No 3
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.4e-206 Score=1575.33 Aligned_cols=549 Identities=72% Similarity=1.168 Sum_probs=537.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtm~p~~hgev~v~~dg~e~dldlg~yerf~~~ 80 (564)
||||+|||||+||+||||+|||+|.|||++|++||.||||||||+|||||||||||||||+|||+|+||||||||||||+
T Consensus 1 MKYVlVtGGVISGiGKGv~aSSiG~lLKs~Gl~VTsIKIDPYlN~DAGTmSPyEHGEVfVLDDGgEvDLDLGNYERfldi 80 (585)
T KOG2387|consen 1 MKYVLVTGGVISGIGKGIIASSIGVLLKSCGLRVTSIKIDPYLNIDAGTMSPYEHGEVFVLDDGGEVDLDLGNYERFLDI 80 (585)
T ss_pred CeEEEEeCcEeecccCceeehhHHHHHHhcCceeEEEEeccceeccCcccCccccceEEEecCCceecccccchhhhccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 008476 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (564)
Q Consensus 81 ~~~~~~~~t~g~iy~~vi~ker~g~ylg~tvqviph~t~~i~~~i~~~~~~p~~~~~~~~d~~i~e~ggtvgdies~pf~ 160 (564)
+||++|||||||||+.||+|||+||||||||||||||||+||+||+++|++|||+++.+|||||||+||||||||||||+
T Consensus 81 ~Lt~dNNITtGKiy~~Vi~kER~GdYLGKTVQvvPHiTdaIq~WiervA~iPVdg~~~~pdVCvIELGGTvGDiEs~pfv 160 (585)
T KOG2387|consen 81 TLTRDNNITTGKIYQHVIEKERRGDYLGKTVQVVPHITDAIQDWIERVARIPVDGTGGEPDVCVIELGGTVGDIESMPFV 160 (585)
T ss_pred eeeccCCcccchHHHHHHhhhhccccccceeEeccchhHHHHHHHHHHhcCCcCCCCCCCCEEEEEcCceeccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhhhhhhhCCCcccEEEEeeCCCCCcchhccccccCCCCCCC
Q 008476 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (564)
Q Consensus 161 ea~rq~~~~~~~~~~~~~h~~~vp~~~~~~e~ktkptq~svk~l~s~Gi~pd~lv~R~~~~l~~~~r~kisl~~~v~~~~ 240 (564)
||+||||+++|++|||+|||||||.+++.|||||||||||||+||++|+.||+|+|||.+++..++|+|||+||+|++++
T Consensus 161 eAl~qFq~~vg~~Nf~~iHVsLVp~l~~~gEqKTKPtQ~svr~LR~lGL~Pd~iaCRs~~~l~~~vk~Kis~FChV~~eq 240 (585)
T KOG2387|consen 161 EALRQFQFKVGRENFCLIHVSLVPVLSVTGEQKTKPTQHSVRDLRGLGLSPDLIACRSTKPLEMSVKEKISMFCHVGPEQ 240 (585)
T ss_pred HHHHhheecccCCcEEEEEEEEEEeccccccccCcchHHHHHHHHhcCCCcceEEEccCCCCCHHHHHHHhhhcccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCcccccHHHHHhhhHHHHHHHcCCCCCCC-ccchHHHHHHHhhhcCCCCceEEEEEeccCCCcchHHHHHHH
Q 008476 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTK-EPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKA 319 (564)
Q Consensus 241 Vi~~~dvdtiy~vp~~L~~qG~~~~i~~~l~l~~~~~-~~~~~~w~~~~~~~~~~~~~~~IavVGkY~~~~Day~SIi~a 319 (564)
|++++||+++|.||++|++||+.+++.++|+|+.... .+++++|.+++++.++....++||+||||+.+.|+|.|+++|
T Consensus 241 V~~~hDv~siyhvPllL~~q~~~e~l~~~L~L~~~~~~~~~l~~W~~~~~~~d~~~~~V~IalVGKYt~l~DsY~Sv~KA 320 (585)
T KOG2387|consen 241 VVGLHDVSSIYHVPLLLEEQGIVEYLNRRLGLSIISSERPMLDKWSNMAERYDDLQVPVRIALVGKYTKLSDSYLSVVKA 320 (585)
T ss_pred eeeeccCcchhcchHHHhhhhHHHHHHHHhCCCccccchhhHHHHHHHHHhhhcccCcEEEEEEeccccchHHHHHHHHH
Confidence 9999999999999999999999999999999985222 368999999999999988899999999999999999999999
Q ss_pred HHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEeh
Q 008476 320 LLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 399 (564)
Q Consensus 320 L~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGICL 399 (564)
|+|+++++..+++|.||++.+||+....++|.+|+++|+.|+++|||++|||||+||++|+|.|++|||||++|+|||||
T Consensus 321 L~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGilvPGGFG~RGveG~i~Aak~ARen~iP~LGiCL 400 (585)
T KOG2387|consen 321 LEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGILVPGGFGDRGVEGKILAAKWARENKIPFLGICL 400 (585)
T ss_pred HHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCCeEEeCCcccccchhHHHHHHHHHHhcCCCeEeeeh
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeEeecCCchhhhccCCceeEeeeece
Q 008476 400 GMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 479 (564)
Q Consensus 400 GmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l~~~~s~~~~iyg~~~~I~erh~H 479 (564)
|||++++||+|+++|++||+|+||++++++|++.+|||.+..|||||||||.+++.+..++|..+++||+...+.|||||
T Consensus 401 GmQ~AvIEfaRnvLg~~dAnStEF~p~~~~~vVi~MPE~~~~~mGgtMRLG~R~t~f~~~~s~~~kLYG~~~~V~ERHRH 480 (585)
T KOG2387|consen 401 GMQLAVIEFARNVLGLKDANSTEFDPETKNPVVIFMPEHNKTHMGGTMRLGSRRTVFQDKDSKLRKLYGNVEFVDERHRH 480 (585)
T ss_pred hhhHHHHHHHHHhhCCCCCCccccCCCCCCcEEEECcCCCcccccceeeecccceeeecCchHHHHHhCCchhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999998889999999988899999999
Q ss_pred eeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhcc
Q 008476 480 RYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGNISHLYFV 549 (564)
Q Consensus 480 rYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~ 549 (564)
||||||+.+..|+..|+.|+|.+.+|+++|++|+++||||+|+||||||.|+|.+|+|+|.+.+.|+.+.
T Consensus 481 RyEVNP~~v~~le~~Gl~FvGkd~~g~rmeI~El~~HP~fVg~QfHPE~~srp~kpsp~flGlv~as~~~ 550 (585)
T KOG2387|consen 481 RYEVNPEMVKQLEQAGLSFVGKDVTGKRMEIIELESHPFFVGVQFHPEFKSRPDKPSPLFLGLVAASCGR 550 (585)
T ss_pred ceecCHHHHHHHHhcCcEEEeecCCCcEEEEEEcCCCCceeeeccCHHHhcCCCCCCcchhHhHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999988653
No 4
>PRK05380 pyrG CTP synthetase; Validated
Probab=100.00 E-value=3.5e-196 Score=1573.46 Aligned_cols=528 Identities=55% Similarity=0.939 Sum_probs=509.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtm~p~~hgev~v~~dg~e~dldlg~yerf~~~ 80 (564)
||||||||||+|||||||+|||||+|||+|||+|++||||||||||||||||||||||||||||+||||||||||||||+
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~EtDlDlG~YERf~~~ 81 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFIDT 81 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccccccCCCCCCCccceeEEEccCCCcccccccchhhhcCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 008476 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (564)
Q Consensus 81 ~~~~~~~~t~g~iy~~vi~ker~g~ylg~tvqviph~t~~i~~~i~~~~~~p~~~~~~~~d~~i~e~ggtvgdies~pf~ 160 (564)
+|||+||+||||||++||+|||+|||||||||||||||||||+||+++| .++||||||||||||||||+||+
T Consensus 82 ~l~~~~n~TtG~iy~~vi~kER~G~ylG~tvQviPHit~eI~~~i~~~~--------~~~dv~i~EiGGTvGDiEs~pf~ 153 (533)
T PRK05380 82 NLTKYNNVTTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERILAAG--------TDADVVIVEIGGTVGDIESLPFL 153 (533)
T ss_pred CCccccccchHHHHHHHHHHhhccCccCceEEEccCccHHHHHHHHhcC--------CCCCEEEEEeCCccccccccHHH
Confidence 9999999999999999999999999999999999999999999999997 37899999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhhhhhhhCCCcccEEEEeeCCCCCcchhccccccCCCCCCC
Q 008476 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (564)
Q Consensus 161 ea~rq~~~~~~~~~~~~~h~~~vp~~~~~~e~ktkptq~svk~l~s~Gi~pd~lv~R~~~~l~~~~r~kisl~~~v~~~~ 240 (564)
|||||||+++|++|+|||||||||||+++||+||||||||||+|||+|||||+|+|||+++++++.|+||||||+|+.++
T Consensus 154 ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~E~KtKPtQhsv~~lr~~Gi~pd~i~~R~~~~l~~~~~~Kia~fc~v~~~~ 233 (533)
T PRK05380 154 EAIRQLRLELGRENVLFIHLTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILVCRSERPLPEEEKRKIALFCNVPEEA 233 (533)
T ss_pred HHHHHHHHhhCCCcEEEEEEeccceecCCCcccCCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHhccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCcccccHHHHHhhhHHHHHHHcCCCCCCCccchHHHHHHHhhhcCCCCceEEEEEeccCCCcchHHHHHHHH
Q 008476 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320 (564)
Q Consensus 241 Vi~~~dvdtiy~vp~~L~~qG~~~~i~~~l~l~~~~~~~~~~~w~~~~~~~~~~~~~~~IavVGkY~~~~Day~SIi~aL 320 (564)
||+++|++|+|+||++|++||+++.++++|+|+ .+.++++.|+++++++.++.++++||+||||+++.|||.|+.+||
T Consensus 234 vi~~~d~~~iy~vPl~l~~q~~~~~i~~~l~l~--~~~~~~~~w~~~~~~~~~~~~~v~IalVGKY~~l~DaY~Sv~eAL 311 (533)
T PRK05380 234 VISAPDVDSIYEVPLLLHEQGLDDIVLERLGLE--APEPDLSEWEELVERLKNPKGEVTIALVGKYVELPDAYKSVIEAL 311 (533)
T ss_pred EEEcCCCccHHhhhHHHHHCCCHHHHHHHcCCC--CCCCCHHHHHHHHHHHhCCCCceEEEEEeCccCCcHHHHHHHHHH
Confidence 999999999999999999999999999999998 367799999999999999988999999999999999999999999
Q ss_pred HHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehh
Q 008476 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (564)
Q Consensus 321 ~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGICLG 400 (564)
+|+|+++.++|++.|++++++++++ +++.|+++|||++|||||+++.++++.++++|+++++|+||||+|
T Consensus 312 ~hag~~~~~~v~i~wIdse~l~~~~----------~~~~L~~~DGIIlpGGfG~~~~~g~i~~i~~a~e~~iPiLGIClG 381 (533)
T PRK05380 312 KHAGIANDVKVNIKWIDSEDLEEEN----------VAELLKGVDGILVPGGFGERGIEGKILAIRYARENNIPFLGICLG 381 (533)
T ss_pred HHHHHHcCCeeEEEEEChhhccCcc----------hhhHhhcCCEEEecCCCCccccccHHHHHHHHHHCCCcEEEEchH
Confidence 9999999999999999999987533 346789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCc-ccccCCceeecceeeEeecCCchhhhccCCceeEeeeece
Q 008476 401 MQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 479 (564)
Q Consensus 401 mQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~-~~~~GgtmrlG~~~v~l~~~~s~~~~iyg~~~~I~erh~H 479 (564)
||+|++++||+++|++||+|+||++++++|+|.+|+++. ..++|+|||+|.|+|.+.++ |+++++|+ +..+.|||||
T Consensus 382 mQll~va~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~~~~~ggtmrlg~h~v~i~~g-S~l~~iyg-~~~i~ErhrH 459 (533)
T PRK05380 382 MQLAVIEFARNVLGLEDANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKPG-TLAAEIYG-KEEIYERHRH 459 (533)
T ss_pred HHHHHHHhcccccCcccCcccccCCCCCCCeEeeccccccccccCCcccccceeEEECCC-ChHHHHhC-CCceeeeccc
Confidence 999999999999999999999999999999999999854 56889999999999999998 89999996 6678999999
Q ss_pred eeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhccC
Q 008476 480 RYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGNISHLYFVC 550 (564)
Q Consensus 480 rYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~~ 550 (564)
||+||+.+.+.++..|++++|+++||.++|++|+++||||+|||||||+.++|.+++|||.+|++||.++.
T Consensus 460 ryeVNs~h~qal~~~GL~vsa~s~DgglVEaIEl~~hpfflGVQwHPE~~s~p~~~~pLF~~FV~Aa~~~~ 530 (533)
T PRK05380 460 RYEVNNKYREQLEKAGLVFSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPRRPHPLFAGFVKAALENK 530 (533)
T ss_pred ceecCHHHHHHHhhcCeEEEEEcCCCCcEEEEEeCCCCEEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHh
Confidence 99999999998888899999999988789999999999999999999999999999999999999998764
No 5
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=100.00 E-value=1.2e-194 Score=1561.49 Aligned_cols=524 Identities=58% Similarity=0.959 Sum_probs=504.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtm~p~~hgev~v~~dg~e~dldlg~yerf~~~ 80 (564)
||||||||||+|||||||+|||||+|||+|||+|++||||||||+|||||||||||||||||||+||||||||||||||+
T Consensus 1 ~k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlN~d~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~ 80 (525)
T TIGR00337 1 MKYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPYINIDPGTMSPLQHGEVFVTDDGAETDLDLGHYERFLDT 80 (525)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeecccccCCCCCCCcccCceEEEcCCCccccccccchhhhcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 008476 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (564)
Q Consensus 81 ~~~~~~~~t~g~iy~~vi~ker~g~ylg~tvqviph~t~~i~~~i~~~~~~p~~~~~~~~d~~i~e~ggtvgdies~pf~ 160 (564)
+|||+||+||||||++||+|||+|+|||||||||||||||||+||+++|+ ..+|||||||||||||||||+||+
T Consensus 81 ~l~~~~n~t~G~iy~~vi~kER~G~ylG~tvQviPHvt~ei~~~i~~~~~------~~~~d~~i~EiGGTvGDiEs~pf~ 154 (525)
T TIGR00337 81 NLTRDNNITTGKIYSSVIEKERKGDYLGKTVQIIPHITNEIKDRIKRVAK------ISGPDVVIVEIGGTVGDIESLPFL 154 (525)
T ss_pred CCcCCCCCChHHHHHHHHHHhhcCCcCCCeEEECCCCcHHHHHHHHHhcc------cCCCCEEEEEeCCccccccccHHH
Confidence 99999999999999999999999999999999999999999999999985 468999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhhhhhhhCCCcccEEEEeeCCCCCcchhccccccCCCCCCC
Q 008476 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (564)
Q Consensus 161 ea~rq~~~~~~~~~~~~~h~~~vp~~~~~~e~ktkptq~svk~l~s~Gi~pd~lv~R~~~~l~~~~r~kisl~~~v~~~~ 240 (564)
||+||||+++|++|+|||||||||||+++||+||||||||||+|||+|||||+|||||+.+++++.|+|||+||+|+.++
T Consensus 155 ea~rq~~~~~g~~~~~~ih~t~vp~l~~~~e~KtKPtQhsv~~lr~~Gi~pd~~~~R~~~~l~~~~~~Kia~f~~v~~~~ 234 (525)
T TIGR00337 155 EAIRQFRNEVGRENVAFIHVTLVPYIAAAGEQKTKPTQHSVKELRSLGIQPDIIICRSSEPLDPSTKDKIALFCDVEEEA 234 (525)
T ss_pred HHHHHHHHhhCcCcEEEEEEeeeeeecCCCcccCCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHhccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCcccccHHHHHhhhHHHHHHHcCCCCCCCccchHHHHHHHhhhcCCCCceEEEEEeccCCCcchHHHHHHHH
Q 008476 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320 (564)
Q Consensus 241 Vi~~~dvdtiy~vp~~L~~qG~~~~i~~~l~l~~~~~~~~~~~w~~~~~~~~~~~~~~~IavVGkY~~~~Day~SIi~aL 320 (564)
||+++|++|+|+||++|++||+++.|+++|+|+ .+.+++++|+++++++.+++++++||+||||.++.|+|.||++||
T Consensus 235 vi~~~d~~~iY~vPl~l~~q~~~~~i~~~l~l~--~~~~~~~~W~~~~~~~~~~~~~v~IalVGKY~~~~daY~SI~eAL 312 (525)
T TIGR00337 235 VINAHDVSSIYEVPLLLLKQGLDDYLCRRLNLN--CDEADLSEWEELVEKFINPKHEVTIGIVGKYVELKDSYLSVIEAL 312 (525)
T ss_pred EEEcCCCccHhhhhHHHHHCChHHHHHHHhCCC--CCCCcHHHHHHHHHHhhCCCCCcEEEEEeCCcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999997 356689999999999999888899999999999999999999999
Q ss_pred HHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehh
Q 008476 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (564)
Q Consensus 321 ~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGICLG 400 (564)
+++|++..++|.+.|+++++++..+ .+.|+++|||++|||||+++.++++.++++++++++|+||||+|
T Consensus 313 ~~ag~~~~~~V~~~~i~se~i~~~~-----------~~~L~~~dGIiLpGG~G~~~~~g~i~ai~~a~e~~iP~LGIClG 381 (525)
T TIGR00337 313 KHAGAKLDTKVNIKWIDSEDLEEEG-----------AEFLKGVDGILVPGGFGERGVEGKILAIKYARENNIPFLGICLG 381 (525)
T ss_pred HhCccccCCEEEEEEecHHHhhhhh-----------hhhhcCCCEEEeCCCCCChhhcChHHHHHHHHHcCCCEEEEcHH
Confidence 9999999999999999998875422 13588999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCc-ccccCCceeecceeeEeecCCchhhhccCCceeEeeeece
Q 008476 401 MQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 479 (564)
Q Consensus 401 mQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~-~~~~GgtmrlG~~~v~l~~~~s~~~~iyg~~~~I~erh~H 479 (564)
||+|++++|||++||++|+|+||++++++||+.+|+++. ..++|||||+|+|+|.+.++ |+++++|+ ...+.+||||
T Consensus 382 ~Qll~i~~grnv~gl~~A~s~Ef~~~~~~pVi~l~~~~~~~~~~GGTmRLG~h~v~i~~g-S~L~~iyG-~~~i~erhrH 459 (525)
T TIGR00337 382 MQLAVIEFARNVLGLKGANSTEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYPCILKPG-TLAFKLYG-KEEVYERHRH 459 (525)
T ss_pred HHHHHHHHHHHhcCCCCCCccccCCCCCCCeeeccCcccccccCCceeeccceEEEECCC-ChHHHHhC-CCceeecccc
Confidence 999999999999999999999999999999999999965 68999999999999999998 89999996 4567899999
Q ss_pred eeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHHHHHHHH
Q 008476 480 RYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGNISH 545 (564)
Q Consensus 480 rYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~pLF~~Fv~a 545 (564)
||+||+.+.+.++..|++++|+++||.++|++|+++||||+|||||||+.++|.+++|||.+|++|
T Consensus 460 ry~VNs~h~q~l~~~GL~vsa~s~Dgg~VEaIE~~~hpfflGVQwHPE~~s~p~~~~~LF~~FV~A 525 (525)
T TIGR00337 460 RYEVNNEYREQLENKGLIVSGTSPDGRLVEIIELPDHPFFVACQFHPEFTSRPNRPHPLFLGFVKA 525 (525)
T ss_pred eEEECHHHHHhhhhCCeEEEEEECCCCEEEEEEECCCCeEEEEecCCCCCCCCCchhHHHHHHHhC
Confidence 999999999988889999999999987899999999999999999999999999999999999975
No 6
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=100.00 E-value=7e-142 Score=1054.63 Aligned_cols=276 Identities=65% Similarity=1.078 Sum_probs=237.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtm~p~~hgev~v~~dg~e~dldlg~yerf~~~ 80 (564)
||||||||||+|||||||+|||||+|||+|||+|+++|||||||+|||||||||||||||||||+||||||||||||||+
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYlNvD~GtmsP~qHGEVfVt~DG~EtDLDlG~YERFl~~ 80 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYLNVDPGTMSPYQHGEVFVTDDGGETDLDLGHYERFLDI 80 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SSSSSCCCS-CCTCS-EEE-TTS-EEETHHHHHHHHHTS
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccccccCCCCCCCcCccceeEecCccccccccchHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 008476 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (564)
Q Consensus 81 ~~~~~~~~t~g~iy~~vi~ker~g~ylg~tvqviph~t~~i~~~i~~~~~~p~~~~~~~~d~~i~e~ggtvgdies~pf~ 160 (564)
+|+|+||+||||||++||+|||+|+|||||||||||||||||+||+++|+ ..+|||||||||||||||||+|||
T Consensus 81 ~l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHitdeIk~~I~~~a~------~~~~Dv~iiEiGGTVGDIEs~pFl 154 (276)
T PF06418_consen 81 NLTKDNNITTGKIYQSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAK------KPEPDVVIIEIGGTVGDIESLPFL 154 (276)
T ss_dssp ---GGGEEEHHHHHHHHHHHHHTTTTTTS---CCCHHHHHHHHHHHHHHC------CCT-SEEEEEEESETTSCCCHHHH
T ss_pred CCcccccccHHHHHHHHHHHHhcCcccCceeeecchHHHHHHHHHHHhcC------CCCCCEEEEecCCcccccccccHH
Confidence 99999999999999999999999999999999999999999999999996 458999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhhhhhhhCCCcccEEEEeeCCCCCcchhccccccCCCCCCC
Q 008476 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (564)
Q Consensus 161 ea~rq~~~~~~~~~~~~~h~~~vp~~~~~~e~ktkptq~svk~l~s~Gi~pd~lv~R~~~~l~~~~r~kisl~~~v~~~~ 240 (564)
||+||||+++|++|+||||||||||++++||+||||||||||+|||+|||||+|||||+.+++++.|+|||+||+|++++
T Consensus 155 EAirQl~~~~G~~n~~~IHvtlVP~l~~~gE~KTKPtQhSVk~Lr~~GI~PDilvcRs~~~l~~~~k~KIalFc~V~~e~ 234 (276)
T PF06418_consen 155 EAIRQLRNEVGRENVCFIHVTLVPYLKAAGEQKTKPTQHSVKELRSIGIQPDILVCRSERPLDEEIKEKIALFCNVPPEN 234 (276)
T ss_dssp HHHHHHHHHH-TTCEEEEEEEE--EETTTTEE-HHHHHHHHHHHHHTT---SEEEEEESS---HHHHHHHHHHCTS-GGG
T ss_pred HHHHHHHHHhCcCcEEEEEEeeeeeeCCCCccCCccHHHHHHHHHhCCCCCCEEEEcCCCCCCHHHHHHHHccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCcccccHHHHHhhhHHHHHHHcCCCCCCCccchHHH
Q 008476 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEW 284 (564)
Q Consensus 241 Vi~~~dvdtiy~vp~~L~~qG~~~~i~~~l~l~~~~~~~~~~~w 284 (564)
||+++|++++|+||++|++||+++.++++|+|+ .+.+++++|
T Consensus 235 VI~~~Dv~sIYeVPl~L~~qgl~~~i~~~L~L~--~~~~dl~~W 276 (276)
T PF06418_consen 235 VISAPDVSSIYEVPLLLEEQGLDEYILKRLNLE--KKEPDLSEW 276 (276)
T ss_dssp EEEEE--SSCCHHHHHHHHTTHHHHHHHHTT----------HHH
T ss_pred EEEcCCcccHHHHHHHHHHcCcHHHHHHHcCcC--CCCCCcccC
Confidence 999999999999999999999999999999998 477899999
No 7
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=100.00 E-value=7.5e-133 Score=983.76 Aligned_cols=255 Identities=62% Similarity=1.031 Sum_probs=252.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCC
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtm~p~~hgev~v~~dg~e~dldlg~yerf~~~~ 81 (564)
|||||||||+|||||||+|||||+|||+|||+|+++|||||||+|||||||||||||||||||+||||||||||||||++
T Consensus 1 kyi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~~ 80 (255)
T cd03113 1 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTN 80 (255)
T ss_pred CEEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCCCCCCCCccceeEEEccCCCcccccccchhhhcCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHH
Q 008476 82 LTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIE 161 (564)
Q Consensus 82 ~~~~~~~t~g~iy~~vi~ker~g~ylg~tvqviph~t~~i~~~i~~~~~~p~~~~~~~~d~~i~e~ggtvgdies~pf~e 161 (564)
|+++||+||||||++||+|||+|+|||||||||||||||||+||+++|+ ..++||||||||||||||||+||+|
T Consensus 81 l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHit~eIk~~i~~~~~------~~~~dv~i~EiGGTvGDiEs~pf~E 154 (255)
T cd03113 81 LSRDNNITTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAE------KSGADVVIVEIGGTVGDIESLPFLE 154 (255)
T ss_pred CcCccCcChHHHHHHHHHHhhccCccCceEEECcCccHHHHHHHHHhhc------cCCCCEEEEEeCCccccccccHHHH
Confidence 9999999999999999999999999999999999999999999999995 4689999999999999999999999
Q ss_pred HHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhhhhhhhCCCcccEEEEeeCCCCCcchhccccccCCCCCCCe
Q 008476 162 ALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNI 241 (564)
Q Consensus 162 a~rq~~~~~~~~~~~~~h~~~vp~~~~~~e~ktkptq~svk~l~s~Gi~pd~lv~R~~~~l~~~~r~kisl~~~v~~~~V 241 (564)
|+||||+++|++|+||||||||||++++||+|||||||||++||+.||+||+||||++.+++++.++|||+||+|+.++|
T Consensus 155 Airq~~~~~g~~n~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~GIqPDgIVcRse~pL~e~~keKIAlFcnVpve~V 234 (255)
T cd03113 155 AIRQMKLELGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEKPLPPEIREKIALFCDVPPEAV 234 (255)
T ss_pred HHHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEeCCCCCchHHHHHHHHhcCCCHHHe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCCcccccHHHHHhhh
Q 008476 242 ITLYDVPNIWHIPLLLRDQKA 262 (564)
Q Consensus 242 i~~~dvdtiy~vp~~L~~qG~ 262 (564)
+...|++++|+||+.|++||+
T Consensus 235 I~~~d~~~iY~vPl~l~~q~~ 255 (255)
T cd03113 235 ISAPDVDNIYEVPLLLEQQGL 255 (255)
T ss_pred eecCCCcchhhccHHHHhCcC
Confidence 999999999999999999985
No 8
>PRK06186 hypothetical protein; Validated
Probab=100.00 E-value=5.2e-62 Score=482.31 Aligned_cols=228 Identities=35% Similarity=0.545 Sum_probs=211.7
Q ss_pred ceEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCc
Q 008476 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (564)
Q Consensus 297 ~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~ 376 (564)
+++||+||||+++.|||.||++||+|+|++..++|++.||++++++++ +.|+++|||+||||||.||
T Consensus 1 ~v~IalVGKY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~-------------~~l~~~dgilvpgGfg~rg 67 (229)
T PRK06186 1 TLRIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTPEITDP-------------EDLAGFDGIWCVPGSPYRN 67 (229)
T ss_pred CcEEEEEECCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchhhcCCh-------------hhHhhCCeeEeCCCCCccc
Confidence 379999999999999999999999999999999999999999998642 2589999999999999999
Q ss_pred hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeEe
Q 008476 377 VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 456 (564)
Q Consensus 377 ~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l 456 (564)
++|++.+++|||++++|+||||||||+++++||||+++++||+|+||++++++|||.+|+. ....+ .|+|.+
T Consensus 68 ~~Gki~ai~~Are~~iP~LGIClGmQ~avIe~arnv~g~~dA~s~E~~~~~~~pvi~~~~~-~~~~~-------~h~v~l 139 (229)
T PRK06186 68 DDGALTAIRFARENGIPFLGTCGGFQHALLEYARNVLGWADAAHAETDPEGDRPVIAPLSC-SLVEK-------TGDIRL 139 (229)
T ss_pred HhHHHHHHHHHHHcCCCeEeechhhHHHHHHHHhhhcCCcCCCcCCCCCCCCCCEEEECcc-ccccC-------ceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999983 22222 378889
Q ss_pred ecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCch
Q 008476 457 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 536 (564)
Q Consensus 457 ~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~ 536 (564)
.++ |+++++|+ +..+.+||||||+||+.+.+.++..|++++|+++||. +|++|+++||||+|||||||+.++|.+++
T Consensus 140 ~~~-S~l~~iyg-~~~i~erhrHryeVNs~h~q~i~~~GL~vsa~s~DG~-iEaiE~~~hpf~lGVQwHPE~~s~~~~~~ 216 (229)
T PRK06186 140 RPG-SLIARAYG-TLEIEEGYHCRYGVNPEFVAALESGDLRVTGWDEDGD-VRAVELPGHPFFVATLFQPERAALAGRPP 216 (229)
T ss_pred CCC-CHHHHHhC-CCeeeeeccccEEECHHHHHHHhcCCeEEEEEcCCCC-EEEEEeCCCCcEEEEeCCCCccCCCCCCC
Confidence 888 89999996 5668899999999999999999899999999999996 99999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 008476 537 PLFLGNISHLYF 548 (564)
Q Consensus 537 pLF~~Fv~aa~~ 548 (564)
|||.+|+++|..
T Consensus 217 ~LF~~Fv~aa~~ 228 (229)
T PRK06186 217 PLVRAFLRAARA 228 (229)
T ss_pred HHHHHHHHHHhc
Confidence 999999999864
No 9
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=100.00 E-value=6.2e-48 Score=395.95 Aligned_cols=280 Identities=19% Similarity=0.251 Sum_probs=228.3
Q ss_pred hhhhhCCCcccEEEEeeCCCCCcchhccccccCCCCCCCeeeeCCCCCcccccHHHHHhhhHHHHHHHcC-CCCCCCccc
Q 008476 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLN-LQGTTKEPL 280 (564)
Q Consensus 202 k~l~s~Gi~pd~lv~R~~~~l~~~~r~kisl~~~v~~~~Vi~~~dvdtiy~vp~~L~~qG~~~~i~~~l~-l~~~~~~~~ 280 (564)
++.||.++++.++|+|+.+..++|||++.||..||+.++|++|.++||| +|+++||++|.|++.+..-. +++......
T Consensus 67 ~d~Es~~i~~~G~vvre~~~~~Sn~ra~~sL~~~Lk~~gipgI~GIDTR-aLtr~iR~~G~m~~~I~~~~~~~~~~~~~~ 145 (368)
T COG0505 67 EDFESDRIHAAGLVVRELSERPSNWRATESLDEYLKEEGIPGIAGIDTR-ALTRKIREKGAMKGVIATGPELDPAKLLER 145 (368)
T ss_pred hhccccCceEEEEEEcccccccCccccccCHHHHHHHcCCCceecccHH-HHHHHHHhcCCcceEeecCcccChHHHHHH
Confidence 5789999999999999999999999999999999999999999999999 99999999999999665432 221000011
Q ss_pred hHHH-----HHHHhhhcC------------CCCceEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCccc
Q 008476 281 LKEW-----TSRAEICDG------------LHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLED 343 (564)
Q Consensus 281 ~~~w-----~~~~~~~~~------------~~~~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~ 343 (564)
.+.| .++++.++. .+...+|+++ ||+ .+.||++.|..+|+++.+ ++++.-
T Consensus 146 ~~~~~~~~~~dlv~~VSt~~~~~~~~~~~~~~~~~~Vv~i-D~G----vK~nIlr~L~~rg~~vtV------VP~~t~-- 212 (368)
T COG0505 146 ARAFPGILGTDLVKEVSTKEPYTWPGLNGGGEPGKHVVVI-DFG----VKRNILRELVKRGCRVTV------VPADTS-- 212 (368)
T ss_pred HhhcCCCCcccccceeecCCceeccccccCCCCCcEEEEE-EcC----ccHHHHHHHHHCCCeEEE------EcCCCC--
Confidence 1223 234444432 1225689999 899 899999999999999977 444321
Q ss_pred ccccCCchhhhHHHHhc-cCCCEEEeCCCCCCCc-hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCccc
Q 008476 344 ATEKENPDAYKAAWKLL-KGADGILVPGGFGNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANST 421 (564)
Q Consensus 344 ~~~~~~p~~y~~~~~~L-~~~DGIllpGGfG~r~-~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~ 421 (564)
+.+.+ .++|||+||+|||||. .+..+..++...+.++|+||||||||||++|+|++++||+
T Consensus 213 ------------~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iPifGICLGHQllalA~Ga~T~Kmk----- 275 (368)
T COG0505 213 ------------AEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIFGICLGHQLLALALGAKTYKMK----- 275 (368)
T ss_pred ------------HHHHHhhCCCEEEEeCCCCChhHHHHHHHHHHHHhccCCCeEEEcHHHHHHHHhcCCceeecc-----
Confidence 22333 5899999999999996 4789999999999999999999999999999999999987
Q ss_pred ccCCCCCCCeeeecCCCcccccCCceeecceeeEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEE
Q 008476 422 EFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGK 501 (564)
Q Consensus 422 Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~ 501 (564)
.+|+|. ||||+-.. .++..| ++|||+|+|+++.+. ... +++..
T Consensus 276 ------------------FGHrG~-----NhPV~dl~---------tgrv~I-TSQNHGyaVd~~s~~---~~~-~vth~ 318 (368)
T COG0505 276 ------------------FGHRGA-----NHPVKDLD---------TGRVYI-TSQNHGYAVDEDSLV---ETL-KVTHV 318 (368)
T ss_pred ------------------cCCCCC-----CcCccccc---------CCeEEE-EecCCceecChhhcC---CCc-eeEEE
Confidence 489998 89986332 145556 899999999998433 223 88899
Q ss_pred eCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhccC
Q 008476 502 DETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGNISHLYFVC 550 (564)
Q Consensus 502 s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~~ 550 (564)
+.++.++|++++++.|.| +||||||.+++|+|.++||+.|++.+..+.
T Consensus 319 nlnDgTvEGi~h~~~P~f-SVQ~HPEAsPGPhDt~ylFd~Fi~~~~~~~ 366 (368)
T COG0505 319 NLNDGTVEGIRHKDLPAF-SVQYHPEASPGPHDTRYLFDEFIELMEAAK 366 (368)
T ss_pred eCCCCCccceecCCCceE-EEccCCCCCCCCcccHHHHHHHHHHHHHhh
Confidence 887778999999999965 999999999999999999999999988754
No 10
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=100.00 E-value=7.8e-46 Score=370.88 Aligned_cols=234 Identities=62% Similarity=1.037 Sum_probs=212.7
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCch
Q 008476 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (564)
Q Consensus 298 ~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~ 377 (564)
++||+||||++..|+|.|++++|.+++.+...++.+.|+++++++..+ .++.|+++|||++||||+.+..
T Consensus 1 ~~i~lvg~~~~~~day~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~----------~~~~l~~~dgivl~GG~~~~~~ 70 (235)
T cd01746 1 VRIALVGKYVELPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEEN----------AEEALKGADGILVPGGFGIRGV 70 (235)
T ss_pred CEEEEEECCcCCHHHHHHHHHHHHHHHHHcCCeeEEEEeChhhcCccc----------hhhhhccCCEEEECCCCCCcch
Confidence 589999999999999999999999999998888999999988764421 1246889999999999999998
Q ss_pred hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCC-cccccCCceeecceeeEe
Q 008476 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEG-SKTHMGGTMRLGSRRTYF 456 (564)
Q Consensus 378 eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~-~~~~~GgtmrlG~~~v~l 456 (564)
++.+.++++++++++|+||||+|||+|+.++|+++++++++++.|+++.+.+|++.+|.+. ...++|+|||+|.|.+.+
T Consensus 71 ~~~~~~i~~~~~~~~PvlGIClG~Q~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~h~v~i 150 (235)
T cd01746 71 EGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPVIL 150 (235)
T ss_pred hhHHHHHHHHHHCCceEEEEEhHHHHHHHHHHHHhcCCccCCccccCCCCCCCEEEECcccccccccCcccccCceEEEE
Confidence 8999999999999999999999999999999999999999999999999999999998874 577889999999999999
Q ss_pred ecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCch
Q 008476 457 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 536 (564)
Q Consensus 457 ~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~ 536 (564)
.++ |++.++|+ ++.+.++|+|+|+||++++..+...++.++|++.|+..+|++|++++|||+|||||||+.+.+.+++
T Consensus 151 ~~~-s~l~~~~g-~~~~~~n~~H~~~v~~~~~~~~~~~~l~v~a~~~ddg~ieaie~~~~pf~lgvQ~HPE~~~~~~~~~ 228 (235)
T cd01746 151 KPG-TLAHKYYG-KDEVEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGLVEIVELPDHPFFVGTQFHPEFKSRPLKPH 228 (235)
T ss_pred CCC-ChHHHHhC-CCEEEEecCcccccCHHHHHHHhhCCeEEEEEeCCCCeEEEEEcCCCCcEEEEECCCCCcCCCCCcc
Confidence 998 89999996 5566799999999999998876678999999999555699999999999999999999999998899
Q ss_pred HHHHHHH
Q 008476 537 PLFLGNI 543 (564)
Q Consensus 537 pLF~~Fv 543 (564)
+||++|+
T Consensus 229 ~lF~~fv 235 (235)
T cd01746 229 PLFVGFV 235 (235)
T ss_pred HHHHHhC
Confidence 9999995
No 11
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=100.00 E-value=7e-42 Score=360.73 Aligned_cols=275 Identities=18% Similarity=0.267 Sum_probs=213.0
Q ss_pred hhhhCCCcccEEEEeeCCCCCcchhccccccCCCCCCCeeeeCCCCCcccccHHHHHhhhHHHHHHHcCCCCCCCccchH
Q 008476 203 GLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLK 282 (564)
Q Consensus 203 ~l~s~Gi~pd~lv~R~~~~l~~~~r~kisl~~~v~~~~Vi~~~dvdtiy~vp~~L~~qG~~~~i~~~l~l~~~~~~~~~~ 282 (564)
++||.+|++.++|||+.+..+++||++.+|..|+++++|++|.+|||| +|+++||++|+|++++..-..+.......+.
T Consensus 69 ~~es~~~~~~g~vv~~~~~~~s~~~~~~~l~~~l~~~~ipgi~gvDTR-~l~~~iR~~G~~~~~i~~~~~~~~~~~~~~~ 147 (360)
T PRK12564 69 DFESDRPHAKGLIVRELSDIPSNWRSEMSLDEYLKENGIPGISGIDTR-ALTRKLREKGAMKGVIATEDFDAEELLEKAR 147 (360)
T ss_pred ccccCCccEEEEEECcCCCCCCccccccCHHHHHHHCCCCCCCCCcHH-HHHHHHHhcCCceEEEecCCCCHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999 9999999999999877542111100011222
Q ss_pred HH-----HHHHhhhcCCC----------CceEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccc
Q 008476 283 EW-----TSRAEICDGLH----------EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEK 347 (564)
Q Consensus 283 ~w-----~~~~~~~~~~~----------~~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~ 347 (564)
.| .+++.+++..+ ...+|+++ ||+ .+.|++++|+.+|+.+.+ ++.+..
T Consensus 148 ~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~I~vi-D~G----~k~nivr~L~~~G~~v~v------vp~~~~------ 210 (360)
T PRK12564 148 AFPGLLGLDLVKEVSTKEPYPWPGPGGELKYKVVAI-DFG----VKRNILRELAERGCRVTV------VPATTT------ 210 (360)
T ss_pred cCCCCcccCCcceeCCCCCEECCCCCCCCCCEEEEE-eCC----cHHHHHHHHHHCCCEEEE------EeCCCC------
Confidence 23 34555555321 14699999 787 678999999999998755 222210
Q ss_pred CCchhhhHHHHhc-cCCCEEEeCCCCCCCc-hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCC
Q 008476 348 ENPDAYKAAWKLL-KGADGILVPGGFGNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDP 425 (564)
Q Consensus 348 ~~p~~y~~~~~~L-~~~DGIllpGGfG~r~-~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~ 425 (564)
..+.. .++||||||||||++. ....+.+++++.++++|+||||+|||+|+.++|+++.+++
T Consensus 211 --------~~~i~~~~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~PilGIClG~QlLa~a~Gg~v~kl~--------- 273 (360)
T PRK12564 211 --------AEEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKKIPIFGICLGHQLLALALGAKTYKMK--------- 273 (360)
T ss_pred --------HHHHHhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCcEeccC---------
Confidence 00111 2799999999999975 4667889999999899999999999999999999986643
Q ss_pred CCCCCeeeecCCCcccccCCceeecceeeEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCC
Q 008476 426 NTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETS 505 (564)
Q Consensus 426 ~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg 505 (564)
.+|+|. ++++..... ++..+ .+|+|+|+|+++.+ +.++++++.+.++
T Consensus 274 --------------~gh~G~-----~~pv~~~~~---------~~~~i-ts~~H~~~V~~~~l----p~~l~v~a~~~~D 320 (360)
T PRK12564 274 --------------FGHRGA-----NHPVKDLET---------GKVEI-TSQNHGFAVDEDSL----PANLEVTHVNLND 320 (360)
T ss_pred --------------CCccCC-----ceeeEECCC---------CcEEE-EecCcccEEccccc----CCceEEEEEeCCC
Confidence 245554 566654332 12233 68899999987654 3579999998544
Q ss_pred CeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHHHHHHHHH
Q 008476 506 QRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGNISHL 546 (564)
Q Consensus 506 ~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~pLF~~Fv~aa 546 (564)
..+|+++++++|+ +|||||||+.++|.+..+||++|++++
T Consensus 321 g~iegi~~~~~pi-~gVQfHPE~~~gp~d~~~lF~~F~~~~ 360 (360)
T PRK12564 321 GTVEGLRHKDLPA-FSVQYHPEASPGPHDSAYLFDEFVELM 360 (360)
T ss_pred CcEEEEEECCCCE-EEEEeCCcCCCCCCCHHHHHHHHHHhC
Confidence 4699999999995 599999999999999999999999863
No 12
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=100.00 E-value=8.6e-42 Score=359.55 Aligned_cols=277 Identities=20% Similarity=0.295 Sum_probs=212.8
Q ss_pred hhhhhCCCcccEEEEeeCCCCCcchhccccccCCCCCCCeeeeCCCCCcccccHHHHHhhhHHHHHHHcCCCCCCCccch
Q 008476 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLL 281 (564)
Q Consensus 202 k~l~s~Gi~pd~lv~R~~~~l~~~~r~kisl~~~v~~~~Vi~~~dvdtiy~vp~~L~~qG~~~~i~~~l~l~~~~~~~~~ 281 (564)
.++||.+|++.++|||+.+..+++||++.+|..||++++|++|.+|||| +|+++||++|+|++++..-..+.......+
T Consensus 64 ~~~es~~~~~~g~iv~~~~~~~s~~~~~~~l~~~l~~~~i~gi~gvDTR-~lt~~iR~~G~~~~~i~~~~~~~~~~~~~~ 142 (358)
T TIGR01368 64 EDAESKGIHVSGLVVRELSDRYSNWRATESLDQFLKRHGIPGIYGVDTR-ALVKKIREKGTMKGVISTEDSNDEELVQKA 142 (358)
T ss_pred hhhcccCCcEEEEEECCCCCCCCcccccCCHHHHHHHCCCceEeCCcHH-HHHHHHHhcCCeeEEEecCCCChHHHHHHH
Confidence 4589999999999999999999999999999999999999999999999 999999999999987754221110000111
Q ss_pred HHH-----HHHHhhhcCC------C----CceEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccc
Q 008476 282 KEW-----TSRAEICDGL------H----EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATE 346 (564)
Q Consensus 282 ~~w-----~~~~~~~~~~------~----~~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~ 346 (564)
..| .+++..++.. . ...+|+++ ||+ .+.|++++|+.+|+.+.+ ++.+. .
T Consensus 143 ~~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~i~vi-D~G----~k~ni~~~L~~~G~~v~v------vp~~~-~---- 206 (358)
T TIGR01368 143 SVSPDIDGINLVAEVSTKEPYTWGQKRGGKKKRVVVI-DFG----VKQNILRRLVKRGCEVTV------VPYDT-D---- 206 (358)
T ss_pred HhCCCCccCCccceeccCCCEEeCCCCCCCccEEEEE-eCC----cHHHHHHHHHHCCCEEEE------EcCCC-C----
Confidence 122 2355555431 1 12589999 887 778999999999998755 22211 0
Q ss_pred cCCchhhhHHHHhc-cCCCEEEeCCCCCCCch-hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccC
Q 008476 347 KENPDAYKAAWKLL-KGADGILVPGGFGNRGV-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFD 424 (564)
Q Consensus 347 ~~~p~~y~~~~~~L-~~~DGIllpGGfG~r~~-eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~ 424 (564)
+.+.. ..+|||||+||||++.. ...++.++++.+ ++|+||||||||+|+.++|+++.+++
T Consensus 207 ---------~~~i~~~~pDGIiLSgGPgdp~~~~~~i~~i~~~~~-~~PILGIClG~QlLa~a~Gg~v~kl~-------- 268 (358)
T TIGR01368 207 ---------AEEIKKYNPDGIFLSNGPGDPAAVEPAIETIRKLLE-KIPIFGICLGHQLLALAFGAKTYKMK-------- 268 (358)
T ss_pred ---------HHHHHhhCCCEEEECCCCCCHHHHHHHHHHHHHHHc-CCCEEEECHHHHHHHHHhCCceeccC--------
Confidence 00112 25699999999999863 667888999887 99999999999999999999987654
Q ss_pred CCCCCCeeeecCCCcccccCCceeecceeeEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCC
Q 008476 425 PNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET 504 (564)
Q Consensus 425 ~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~d 504 (564)
.+|+|. +|++..... ++..+ ++++|+|+|+++.+. ..++++++++.+
T Consensus 269 ---------------~gh~G~-----nhpV~~~~~---------~~v~i-tsqnH~~aV~~~~l~---~~~l~vta~~~n 315 (358)
T TIGR01368 269 ---------------FGHRGG-----NHPVKDLIT---------GRVEI-TSQNHGYAVDPDSLP---AGDLEVTHVNLN 315 (358)
T ss_pred ---------------cCcCCC-----ceeeEECCC---------CcEEE-eecCCCcEEcccccC---CCceEEEEEECC
Confidence 255665 677754332 12233 688999999876542 368999999854
Q ss_pred CCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHh
Q 008476 505 SQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGNISHLY 547 (564)
Q Consensus 505 g~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~pLF~~Fv~aa~ 547 (564)
+..+|+++++++|+ +|||||||+.++|.+..+||++|++++.
T Consensus 316 Dg~Vegi~h~~~pi-~gVQfHPE~~~gp~d~~~lF~~F~~~~~ 357 (358)
T TIGR01368 316 DGTVEGIRHKDLPV-FSVQYHPEASPGPHDTEYLFDEFIDLIK 357 (358)
T ss_pred CCcEEEEEECCCCE-EEEEECCCCCCCCCChHHHHHHHHHHhh
Confidence 44599999999995 5999999999999999999999998875
No 13
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=100.00 E-value=9.1e-41 Score=351.35 Aligned_cols=276 Identities=18% Similarity=0.223 Sum_probs=213.4
Q ss_pred hhhhCCCcccEEEEeeCCCCCcchhccccccCCCCCCCeeeeCCCCCcccccHHHHHhhhHHHHHHHcCCCCCCCccchH
Q 008476 203 GLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLK 282 (564)
Q Consensus 203 ~l~s~Gi~pd~lv~R~~~~l~~~~r~kisl~~~v~~~~Vi~~~dvdtiy~vp~~L~~qG~~~~i~~~l~l~~~~~~~~~~ 282 (564)
++||.+|++.++|||+.+..++|||++.+|..|+++++|++|.++||| +|+++||++|+|++++..-. +. .....+.
T Consensus 67 ~~es~~~~~~g~vv~~~~~~~s~~~~~~~l~~~l~~~~i~gi~giDTR-~lt~~lR~~G~~~~~i~~~~-~~-~~~~~~~ 143 (354)
T PRK12838 67 DYESKQPQVKGVIVYELSREGSHYRAKQSLDDFLKEWNIPGISGVDTR-ALVKHIREKGTMKASITTTD-DA-HAFDQIK 143 (354)
T ss_pred hhcccCceEEEEEECcCCCCCCcccccCCHHHHHHHCCCCcccCCCHH-HHHHHHHHcCCceEEEecCC-cH-HHHHHHH
Confidence 689999999999999999999999999999999999999999999999 99999999999998775421 11 0111122
Q ss_pred HH---HHHHhhhcCC------CCceEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhh
Q 008476 283 EW---TSRAEICDGL------HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAY 353 (564)
Q Consensus 283 ~w---~~~~~~~~~~------~~~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y 353 (564)
.| .++++.++.. ....+|+++ ||+ .+.+++++|+.+|+.+.+ +.| +. +.+
T Consensus 144 ~~~~~~~~v~~vs~~~~~~~~~~~~~V~vi-D~G----~k~ni~~~L~~~G~~v~v---vp~-~~-~~~----------- 202 (354)
T PRK12838 144 ALVLPKNVVAQVSTKEPYTYGNGGKHVALI-DFG----YKKSILRSLSKRGCKVTV---LPY-DT-SLE----------- 202 (354)
T ss_pred hhhccCCcccEEEcCCCEEeCCCCCEEEEE-CCC----HHHHHHHHHHHCCCeEEE---EEC-CC-CHH-----------
Confidence 22 3556665542 234689999 887 789999999999988755 122 11 110
Q ss_pred hHHHHh-ccCCCEEEeCCCCCCCch-hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCe
Q 008476 354 KAAWKL-LKGADGILVPGGFGNRGV-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPC 431 (564)
Q Consensus 354 ~~~~~~-L~~~DGIllpGGfG~r~~-eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~v 431 (564)
+. -.++|||||+||||++.. ...+..++.+.++ +|+||||||||+|+.++|+++.+++
T Consensus 203 ----~i~~~~~DGIiLsgGPgdp~~~~~~~~~i~~~~~~-~PvlGIClG~QlLa~a~Gg~v~kl~--------------- 262 (354)
T PRK12838 203 ----EIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISS-YPILGICLGHQLIALALGADTEKLP--------------- 262 (354)
T ss_pred ----HHhhcCCCEEEEcCCCCChHHhHHHHHHHHHHhcC-CCEEEECHHHHHHHHHhCCEEecCC---------------
Confidence 11 137999999999999753 4567788888876 9999999999999999999996643
Q ss_pred eeecCCCcccccCCceeecceeeEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEE
Q 008476 432 VIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIV 511 (564)
Q Consensus 432 i~~m~e~~~~~~GgtmrlG~~~v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~i 511 (564)
.+|.|+ +|++..... ++.. ..+++|+|+|+++.+. ..++.+++.+.++..+|++
T Consensus 263 --------~gh~G~-----~hpV~~~~~---------~~~~-~ts~~H~~aV~~~sl~---~~~l~v~a~~~~Dg~Veai 316 (354)
T PRK12838 263 --------FGHRGA-----NHPVIDLTT---------GRVW-MTSQNHGYVVDEDSLD---GTPLSVRFFNVNDGSIEGL 316 (354)
T ss_pred --------CCccCC-----ceEEEECCC---------CeEE-EeccchheEecccccC---CCCcEEEEEECCCCeEEEE
Confidence 245565 678765443 1222 3678899999875442 3468899987544459999
Q ss_pred EeCCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhcc
Q 008476 512 ELPNHPYFIGVQFHPEYKSRPGKPSPLFLGNISHLYFV 549 (564)
Q Consensus 512 e~~~~pffiGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~ 549 (564)
+++++| ++|||||||+.++|.+..+||++|++++.+.
T Consensus 317 ~~~~~p-i~gVQfHPE~~~gp~d~~~lF~~F~~~~~~~ 353 (354)
T PRK12838 317 RHKKKP-VLSVQFHPEAHPGPHDAEYIFDEFLEMMEKA 353 (354)
T ss_pred EECCCC-EEEEEeCCCCCCCCccHHHHHHHHHHHHHhc
Confidence 999999 6699999999999999999999999998653
No 14
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=100.00 E-value=1.7e-39 Score=344.09 Aligned_cols=280 Identities=18% Similarity=0.251 Sum_probs=210.1
Q ss_pred hhhhhCCCcccEEEEeeCCCCCcchhccccccCCCCCCCeeeeCCCCCcccccHHHHHhhhHHHHHHHcCCCCCCCccch
Q 008476 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLL 281 (564)
Q Consensus 202 k~l~s~Gi~pd~lv~R~~~~l~~~~r~kisl~~~v~~~~Vi~~~dvdtiy~vp~~L~~qG~~~~i~~~l~l~~~~~~~~~ 281 (564)
.++||.++++.++|||+.+..++|||++.+|..|+++++|++|.+|||| +|+++||++|.|++++..-..+.......+
T Consensus 70 ~~~es~~~~~~g~iv~e~~~~~s~~~~~~sl~~~l~~~~ipgi~gvDTR-~lt~~iR~~G~~~g~i~~~~~~~~~~~~~~ 148 (382)
T CHL00197 70 EDIESVKIQVKGIIAKNICKSSSNWRQQESLVSYLQRHKIPFIFGIDTR-ALTQHLRRFGTMNGCISNQNLNLSYLRAKI 148 (382)
T ss_pred hhhcccCccEEEEEECCCCCCCCcccccCCHHHHHHHCCCceEeCCcHH-HHHHHHHhcCCceEEEEcCCCChHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999 999999999999988764222210000011
Q ss_pred HHH-----HHHHhhhcCC-----------------------CCceEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEE
Q 008476 282 KEW-----TSRAEICDGL-----------------------HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVI 333 (564)
Q Consensus 282 ~~w-----~~~~~~~~~~-----------------------~~~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i 333 (564)
..| .++++.++.. ....+|+++ |++ ...||+++|+.+|+++.+
T Consensus 149 ~~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~vi-D~g----~k~ni~~~L~~~G~~v~v---- 219 (382)
T CHL00197 149 KESPHMPSSDLIPRVTTSSYYEWDEKSHPSFYLADNKRPHSSYQLKIIVI-DFG----VKYNILRRLKSFGCSITV---- 219 (382)
T ss_pred HcCCCCccCCccceecCCCCEEecCCCccccccccccccccCCCCEEEEE-ECC----cHHHHHHHHHHCCCeEEE----
Confidence 111 3445544421 114689999 776 567999999999998755
Q ss_pred EEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCch-hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccc
Q 008476 334 DWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV 412 (564)
Q Consensus 334 ~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~-eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~v 412 (564)
++.+. .. ++. ...++|||||+||||++.. ...+..++.+.+.++|+||||||||+|+.++|+++
T Consensus 220 --vp~~~-~~----------~~i--~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a~Gg~v 284 (382)
T CHL00197 220 --VPATS-PY----------QDI--LSYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFGICMGHQILSLALEAKT 284 (382)
T ss_pred --EcCCC-CH----------HHH--hccCCCEEEEcCCCCChhHHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHHhCCEE
Confidence 22211 00 000 1237899999999999863 45567778887779999999999999999999998
Q ss_pred ccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhc
Q 008476 413 LNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLE 492 (564)
Q Consensus 413 lgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~ 492 (564)
.+++ .+|.|. ++++.+. ++..+ +.++|+|.++++.+..
T Consensus 285 ~k~~-----------------------~Gh~g~-----n~pv~~~-----------~~v~i-tsq~H~~~v~~~sv~~-- 322 (382)
T CHL00197 285 FKLK-----------------------FGHRGL-----NHPSGLN-----------QQVEI-TSQNHGFAVNLESLAK-- 322 (382)
T ss_pred eccC-----------------------CCCCCC-----CEecCCC-----------CceEE-eecchheEeeccccCC--
Confidence 6643 245554 5555311 12223 5678999998876542
Q ss_pred cCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhccC
Q 008476 493 NAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGNISHLYFVC 550 (564)
Q Consensus 493 ~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~~ 550 (564)
.++.+++.+.++..+|+++++++|+ +|||||||+.++|++..++|++|+++++++.
T Consensus 323 -~~~~vt~~~~nDgtvegi~h~~~pi-~gVQFHPE~~~gp~d~~~lf~~Fv~~~~~~~ 378 (382)
T CHL00197 323 -NKFYITHFNLNDGTVAGISHSPKPY-FSVQYHPEASPGPHDADYLFEYFIEIIKHSK 378 (382)
T ss_pred -CCcEEEEEECCCCCEEEEEECCCCc-EEEeeCCCCCCCCCCHHHHHHHHHHHHHhhh
Confidence 3688888864334499999999995 5999999999999998899999999987754
No 15
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=3.1e-39 Score=343.18 Aligned_cols=268 Identities=19% Similarity=0.265 Sum_probs=204.9
Q ss_pred hhhhhCCCcccEEEEeeCCCCCcchhccccccCCCCCCCeeeeCCCCCcccccHHHHHhhhHHHHHHHcCC-CCCCCccc
Q 008476 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNL-QGTTKEPL 280 (564)
Q Consensus 202 k~l~s~Gi~pd~lv~R~~~~l~~~~r~kisl~~~v~~~~Vi~~~dvdtiy~vp~~L~~qG~~~~i~~~l~l-~~~~~~~~ 280 (564)
.+.||.++++.++|||+.+..++|||++.+|..||++++|++|.+|||| +|+++||++|+|++++..-+. +.......
T Consensus 120 ~d~ES~~~~~~G~vv~e~~~~~s~~~~~~sL~~~L~~~~ipgI~giDTR-aLt~~iR~~G~m~g~i~~~~~~~~~~~~~~ 198 (415)
T PLN02771 120 DDEESRQCFLAGLVIRSLSISTSNWRCTKTLGDYLAERNIMGIYDVDTR-AITRRLREDGSLIGVLSTEDSKTDEELLKM 198 (415)
T ss_pred hhhcccCCcEEEEEeCcCCCCCCcccccCCHHHHHHHcCCcceecCcHH-HHHHHHHhcCCeeEEEecCCCCCHHHHHHH
Confidence 3679999999999999999999999999999999999999999999999 999999999999988754221 10000111
Q ss_pred hHHH----HHHHhhhcCCC---------------------CceEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEE
Q 008476 281 LKEW----TSRAEICDGLH---------------------EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDW 335 (564)
Q Consensus 281 ~~~w----~~~~~~~~~~~---------------------~~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~w 335 (564)
+..| .++++.++..+ ...+|+++ ||+ ++.+|++.|...|+.+.+
T Consensus 199 ~~~~~~~~~~lv~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivvi-D~G----~K~nIlr~L~~~G~~v~V------ 267 (415)
T PLN02771 199 SRSWDIVGIDLISGVSCKSPYEWVDKTNPEWDFNTNSRDGESYHVIAY-DFG----IKHNILRRLASYGCKITV------ 267 (415)
T ss_pred HHhCCCccCCccceecCCCCEEecCCCcccccccccccCCCCCEEEEE-CCC----hHHHHHHHHHHcCCeEEE------
Confidence 1222 24455444210 11589999 888 889999999999998866
Q ss_pred ecCCCcccccccCCchhhhHHHHhc-cCCCEEEeCCCCCCCch-hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccc
Q 008476 336 IPACDLEDATEKENPDAYKAAWKLL-KGADGILVPGGFGNRGV-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVL 413 (564)
Q Consensus 336 i~s~~le~~~~~~~p~~y~~~~~~L-~~~DGIllpGGfG~r~~-eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vl 413 (564)
++.+.- +.+.+ .++|||||+||||++.. ...++.++.+. .++|+||||||||+|+.++|+++.
T Consensus 268 vP~~~~--------------~~ei~~~~pDGIiLSnGPGDP~~~~~~ie~ik~l~-~~iPIlGICLGhQlLa~AlGGkv~ 332 (415)
T PLN02771 268 VPSTWP--------------ASEALKMKPDGVLFSNGPGDPSAVPYAVETVKELL-GKVPVFGICMGHQLLGQALGGKTF 332 (415)
T ss_pred ECCCCC--------------HHHHhhcCCCEEEEcCCCCChhHhhHHHHHHHHHH-hCCCEEEEcHHHHHHHHhcCCeEE
Confidence 332210 11222 47999999999999864 44566667665 479999999999999999999997
Q ss_pred cccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhcc
Q 008476 414 NLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLEN 493 (564)
Q Consensus 414 gl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~ 493 (564)
+++ .+|+|+ ++++..... ++..+ +.++|+|+|+++.+ +
T Consensus 333 K~~-----------------------~Gh~G~-----n~pV~~~~~---------~~v~i-tsqnHg~aVd~~sL----p 370 (415)
T PLN02771 333 KMK-----------------------FGHHGG-----NHPVRNNRT---------GRVEI-SAQNHNYAVDPASL----P 370 (415)
T ss_pred ECC-----------------------CCcccc-----eEEEEECCC---------CCEEE-EecCHHHhhccccC----C
Confidence 754 366676 677764321 12233 67899999987654 4
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHH
Q 008476 494 AGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLF 539 (564)
Q Consensus 494 ~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~pLF 539 (564)
.++++++.+.++..+|+++++++|+ +|||||||..++|+|..++|
T Consensus 371 ~~~~vt~~nlnDgtvegi~~~~~pi-~gVQFHPEa~pgp~Ds~~~F 415 (415)
T PLN02771 371 EGVEVTHVNLNDGSCAGLAFPALNV-MSLQYHPEASPGPHDSDNAF 415 (415)
T ss_pred CceEEEEEeCCCCcEEEEEECCCCE-EEEEcCCCCCCCCCcChhhC
Confidence 6799999885445599999999995 49999999999999998887
No 16
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=100.00 E-value=7e-34 Score=314.32 Aligned_cols=295 Identities=18% Similarity=0.245 Sum_probs=232.2
Q ss_pred EEeeeeeeecCCCccccCC-chhhhhhhhhCCCcccEEEEeeCCCCCcchhccccccCCCCCCCeeeeCCCCCcccccHH
Q 008476 178 IHVSLVPVLNVVGEQKTKP-TQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLL 256 (564)
Q Consensus 178 ~h~~~vp~~~~~~e~ktkp-tq~svk~l~s~Gi~pd~lv~R~~~~l~~~~r~kisl~~~v~~~~Vi~~~dvdtiy~vp~~ 256 (564)
|-|---|.|+.-|=- +++ -+...+.++|-+|++.+||+++.+.-.++|++.-||..|+.++.|+++.|+||| +|+++
T Consensus 50 iLv~T~PlIGNyGVP-~~~~DE~l~~~fES~~I~vaglVV~~ys~~ysHW~a~~SL~eWlq~~gVp~i~gvDTR-aLtk~ 127 (1435)
T KOG0370|consen 50 ILVFTYPLIGNYGVP-PDARDEGLLKHFESGQIHVAGLVVGEYSIEYSHWLATKSLGEWLQEEGVPGIYGVDTR-ALTKK 127 (1435)
T ss_pred EEEEecccccCCCCC-CCccccccccccccCceEEEEEEhhhhccchhhhhhhhhHHHHHHhcCCCccccccHH-HHHHH
Confidence 444445777766655 444 445667889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHhhhHHHHHHHcCCCCCCCccc-hH-HHHHHHhhhcC-------CCCceEEEEEeccCCCcchHHHHHHHHHHcCCcc
Q 008476 257 LRDQKAHEAIFKVLNLQGTTKEPL-LK-EWTSRAEICDG-------LHEPVRIAMVGKYTGLSDAYLSILKALLHASVDL 327 (564)
Q Consensus 257 L~~qG~~~~i~~~l~l~~~~~~~~-~~-~w~~~~~~~~~-------~~~~~~IavVGkY~~~~Day~SIi~aL~~aG~~v 327 (564)
|||||.|-+-+ -++. ..+. ++ +-.+++..++. .++..+|+.+ |++ .+.+++++|..+|+++
T Consensus 128 lReqGSmLgkl---~~e~--~~~~~vdpn~~nLvs~VS~Kep~~y~~Gk~~~I~ai-DcG----~K~N~IRcL~~RGa~v 197 (1435)
T KOG0370|consen 128 LREQGSMLGKL---SIEK--SPVLFVDPNKRNLVSQVSTKEPKVYGDGKSLRILAI-DCG----LKYNQIRCLVKRGAEV 197 (1435)
T ss_pred HHhcCcceeEE---EecC--CCCcccCCCcccchhhheeccceEEcCCcccEEEEc-ccC----chHHHHHHHHHhCceE
Confidence 99999995533 3321 1110 00 01345555543 3456799999 777 7889999999999999
Q ss_pred eeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCch-hHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008476 328 RKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-QGKILAAKYAREHRIPYLGICLGMQVAVI 406 (564)
Q Consensus 328 ~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~-eg~i~~ir~a~e~~iPiLGICLGmQll~i 406 (564)
.+ +.|-.. + + -.++|||+++||||+|.. ...+..++..++.++|+||||+|||+++.
T Consensus 198 tV---vPw~~~--i----------------~-~~~yDGlflSNGPGdPe~~~~~v~~vr~lL~~~~PvfGIClGHQllA~ 255 (1435)
T KOG0370|consen 198 TV---VPWDYP--I----------------A-KEEYDGLFLSNGPGDPELCPLLVQNVRELLESNVPVFGICLGHQLLAL 255 (1435)
T ss_pred EE---ecCCcc--c----------------c-ccccceEEEeCCCCCchhhHHHHHHHHHHHhCCCCeEEEehhhHHHHH
Confidence 87 334221 1 1 128899999999999985 67788899988888999999999999999
Q ss_pred HhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeEeecCCchhhhccCCceeEeeeeceeeeeChh
Q 008476 407 EFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPD 486 (564)
Q Consensus 407 a~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~ 486 (564)
+.|+++++|+ .+++|. |+||..... ++..| ++|||+|+|+++
T Consensus 256 AaGakT~KmK-----------------------yGNRGh-----NiP~~~~~t---------Grc~I-TSQNHGYAVD~~ 297 (1435)
T KOG0370|consen 256 AAGAKTYKMK-----------------------YGNRGH-----NIPCTCRAT---------GRCFI-TSQNHGYAVDPA 297 (1435)
T ss_pred hhCCceEEee-----------------------ccccCC-----CccceeccC---------ceEEE-EecCCceeeccc
Confidence 9999998877 356666 677764332 35556 899999999987
Q ss_pred hhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhcc
Q 008476 487 MIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGNISHLYFV 549 (564)
Q Consensus 487 ~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~ 549 (564)
.++ .|++.+-.+.++...|++.|...|+| ++|||||.+++|.|...+|+.|++...+.
T Consensus 298 tLp----~gWk~lFvN~NDgSNEGI~Hss~P~f-SvQFHPEat~GP~DTeyLFDiFi~lvkk~ 355 (1435)
T KOG0370|consen 298 TLP----AGWKPLFVNANDGSNEGIMHSSKPFF-SVQFHPEATPGPHDTEYLFDVFIELVKKS 355 (1435)
T ss_pred ccc----CCCchheeecccCCCceEecCCCCce-eeecCCcCCCCCcchHHHHHHHHHHHHHH
Confidence 764 56666666655556999999999977 99999999999999999999999988764
No 17
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.94 E-value=9.8e-27 Score=224.48 Aligned_cols=181 Identities=29% Similarity=0.437 Sum_probs=137.0
Q ss_pred HHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-hhHHHHHHHHHHHcCC
Q 008476 314 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-VQGKILAAKYAREHRI 392 (564)
Q Consensus 314 ~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~-~eg~i~~ir~a~e~~i 392 (564)
.|+.++|++.|+++. +.|++.+.. ..++.+.++|||+|+||++++. .+..+.++++++++++
T Consensus 11 ~~l~~~l~~~~~~~~----v~~~~~~~~-------------~~~~~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~ 73 (192)
T PF00117_consen 11 HSLVRALRELGIDVE----VVRVDSDFE-------------EPLEDLDDYDGIIISGGPGSPYDIEGLIELIREARERKI 73 (192)
T ss_dssp HHHHHHHHHTTEEEE----EEETTGGHH-------------HHHHHTTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCeEE----EEECCCchh-------------hhhhhhcCCCEEEECCcCCccccccccccccccccccce
Confidence 488999999986654 455553211 1112488999999999999987 7899999999999999
Q ss_pred CEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeEeecCCchhhhccCCcee
Q 008476 393 PYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTF 472 (564)
Q Consensus 393 PiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l~~~~s~~~~iyg~~~~ 472 (564)
|+||||+|||+|+.++|+++...+ ..++.|+++.+...+. +.++... ...
T Consensus 74 PilGIC~G~Q~la~~~G~~v~~~~----------------------~~~~~g~~~~~~~~~~-----~~~~~~~---~~~ 123 (192)
T PF00117_consen 74 PILGICLGHQILAHALGGKVVPSP----------------------EKPHHGGNIPISETPE-----DPLFYGL---PES 123 (192)
T ss_dssp EEEEETHHHHHHHHHTTHEEEEEE----------------------SEEEEEEEEEEEEEEE-----HGGGTTS---TSE
T ss_pred EEEEEeehhhhhHHhcCCcccccc----------------------cccccccccccccccc-----ccccccc---ccc
Confidence 999999999999999999985321 1356677554422211 1222222 245
Q ss_pred EeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHHHHHHHH
Q 008476 473 IDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGNISH 545 (564)
Q Consensus 473 I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~pLF~~Fv~a 545 (564)
+..+++|+|.|++. .+.+.+++++|.+.++..++++.++++| ++|+|||||+++++.++.+|+..|++|
T Consensus 124 ~~~~~~H~~~v~~~---~~~p~~~~~la~s~~~~~~~~~~~~~~~-i~g~QfHPE~~~~~~~~~~l~nf~~~~ 192 (192)
T PF00117_consen 124 FKAYQYHSDAVNPD---DLLPEGFEVLASSSDGCPIQAIRHKDNP-IYGVQFHPEFSSSPGGPQLLKNFFLKA 192 (192)
T ss_dssp EEEEEEECEEEEEG---HHHHTTEEEEEEETTTTEEEEEEECTTS-EEEESSBTTSTTSTTHHHHHHHHHHHH
T ss_pred cccccccceeeecc---cccccccccccccccccccccccccccE-EEEEecCCcCCCCCCcchhhhheeEeC
Confidence 67899999999875 2236799999999887569999999999 779999999999998888887777765
No 18
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.94 E-value=2.1e-26 Score=221.97 Aligned_cols=187 Identities=28% Similarity=0.391 Sum_probs=128.3
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCC-C-CCCC
Q 008476 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG-G-FGNR 375 (564)
Q Consensus 298 ~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpG-G-fG~r 375 (564)
++|+|| ||+.. +..|+.+||+++|+++.+. . +| +.+..+|+||+|| | |++.
T Consensus 2 ~~i~II-Dyg~G--NL~Sv~~Aler~G~~~~vs--------~---------d~-------~~i~~AD~liLPGVGaf~~a 54 (204)
T COG0118 2 MMVAII-DYGSG--NLRSVKKALERLGAEVVVS--------R---------DP-------EEILKADKLILPGVGAFGAA 54 (204)
T ss_pred CEEEEE-EcCcc--hHHHHHHHHHHcCCeeEEe--------c---------CH-------HHHhhCCEEEecCCCCHHHH
Confidence 579999 89865 8899999999999887652 1 12 5688999999999 4 4331
Q ss_pred --ch--hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCC-----CCCCeeeecCC-CcccccCC
Q 008476 376 --GV--QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPN-----TKNPCVIFMPE-GSKTHMGG 445 (564)
Q Consensus 376 --~~--eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~-----~~~~vi~~m~e-~~~~~~Gg 445 (564)
.. .+.++.++.+.+.++|+||||||||+|. + .|+|.+.. .+..|+.+-++ .++|||||
T Consensus 55 m~~L~~~gl~~~i~~~~~~~kP~LGIClGMQlLf-e-----------~SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMGW 122 (204)
T COG0118 55 MANLRERGLIEAIKEAVESGKPFLGICLGMQLLF-E-----------RSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGW 122 (204)
T ss_pred HHHHHhcchHHHHHHHHhcCCCEEEEeHhHHhhh-h-----------cccccCCCCCcceecceEEEcCCCCCCCCcccc
Confidence 11 3678888888888999999999999994 3 23333221 24566665555 57999999
Q ss_pred ceeecceeeEeecCCchhhhccCCceeEeeeeceeeeeCh---hhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEE
Q 008476 446 TMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNP---DMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGV 522 (564)
Q Consensus 446 tmrlG~~~v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~---~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGv 522 (564)
+- +.+.+++.++..+-.+ -+.|+.|+|.+.+ +.+-.-.++|..|+|.-.+++ ++|+
T Consensus 123 N~------l~~~~~~~l~~gi~~~---~~~YFVHSY~~~~~~~~~v~~~~~YG~~f~AaV~k~N------------~~g~ 181 (204)
T COG0118 123 NQ------VEFVRGHPLFKGIPDG---AYFYFVHSYYVPPGNPETVVATTDYGEPFPAAVAKDN------------VFGT 181 (204)
T ss_pred ce------eeccCCChhhcCCCCC---CEEEEEEEEeecCCCCceEEEeccCCCeeEEEEEeCC------------EEEE
Confidence 52 3333343455555421 2578999999875 222221234444444433333 7799
Q ss_pred cccCCCcCCCCCchHHHHHHHHHH
Q 008476 523 QFHPEYKSRPGKPSPLFLGNISHL 546 (564)
Q Consensus 523 QFHPE~ss~p~~p~pLF~~Fv~aa 546 (564)
|||||+|+..+ ..|.++|++.+
T Consensus 182 QFHPEKSg~~G--l~lL~NFl~~~ 203 (204)
T COG0118 182 QFHPEKSGKAG--LKLLKNFLEWI 203 (204)
T ss_pred ecCcccchHHH--HHHHHHHHhhc
Confidence 99999999875 78999999753
No 19
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.94 E-value=5.6e-26 Score=218.28 Aligned_cols=176 Identities=26% Similarity=0.438 Sum_probs=129.2
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCC-CcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-h
Q 008476 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPAC-DLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-V 377 (564)
Q Consensus 300 IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~-~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~-~ 377 (564)
|+++ ||+ +-.+++++|+.+|+.+.+ ++.+ +++ . ....++||||++||++++. .
T Consensus 1 i~i~-d~g----~~~~~~~~l~~~G~~~~~------~~~~~~~~-------------~-~~~~~~dgiil~GG~~~~~~~ 55 (178)
T cd01744 1 VVVI-DFG----VKHNILRELLKRGCEVTV------VPYNTDAE-------------E-ILKLDPDGIFLSNGPGDPALL 55 (178)
T ss_pred CEEE-ecC----cHHHHHHHHHHCCCeEEE------EECCCCHH-------------H-HhhcCCCEEEECCCCCChhHh
Confidence 5677 787 335899999999988754 2221 110 0 1235799999999998864 3
Q ss_pred hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeEee
Q 008476 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (564)
Q Consensus 378 eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l~ 457 (564)
...++.++++.++++|+||||+|||+|+.++|+++...+. ++.|. .+++...
T Consensus 56 ~~~~~~~~~~~~~~~PvlGIC~G~Q~l~~~~Gg~v~~~~~-----------------------~~~g~-----~~~v~~~ 107 (178)
T cd01744 56 DEAIKTVRKLLGKKIPIFGICLGHQLLALALGAKTYKMKF-----------------------GHRGS-----NHPVKDL 107 (178)
T ss_pred HHHHHHHHHHHhCCCCEEEECHHHHHHHHHcCCceecCCC-----------------------CCCCC-----ceeeEEc
Confidence 6677889999999999999999999999999999854321 12232 2444332
Q ss_pred cCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchH
Q 008476 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 537 (564)
Q Consensus 458 ~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~p 537 (564)
.. ++ ....+++|+|+++++.+ +.+++++|++.++..+|+++++++| ++|+|||||...++.+..+
T Consensus 108 ~~---------~~-~~~v~~~H~~~v~~~~l----p~~~~v~a~s~~~~~i~a~~~~~~~-i~GvQfHPE~~~~~~~~~~ 172 (178)
T cd01744 108 IT---------GR-VYITSQNHGYAVDPDSL----PGGLEVTHVNLNDGTVEGIRHKDLP-VFSVQFHPEASPGPHDTEY 172 (178)
T ss_pred CC---------CC-cEEEEcCceEEEccccc----CCceEEEEEECCCCcEEEEEECCCC-eEEEeeCCCCCCCCCCchH
Confidence 21 11 12256889999986554 4689999998543459999999999 5699999999999888889
Q ss_pred HHHHHH
Q 008476 538 LFLGNI 543 (564)
Q Consensus 538 LF~~Fv 543 (564)
||++|+
T Consensus 173 lf~~f~ 178 (178)
T cd01744 173 LFDEFL 178 (178)
T ss_pred hHhhhC
Confidence 999995
No 20
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.93 E-value=2.4e-25 Score=219.76 Aligned_cols=191 Identities=26% Similarity=0.424 Sum_probs=141.8
Q ss_pred HHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCC-------CCCCc-----------
Q 008476 315 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGG-------FGNRG----------- 376 (564)
Q Consensus 315 SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGG-------fG~r~----------- 376 (564)
+++++...+|.-..+ +++ +++ + ..+.+.++..|||++||| +|...
T Consensus 30 ~yv~ai~~aGg~pil------lP~--~~d------~---~~~~~~l~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~R 92 (243)
T COG2071 30 DYVDAIIKAGGIPIL------LPA--LED------P---EDARQYLDLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPER 92 (243)
T ss_pred HHHHHHHHcCCceEE------ecC--CCC------H---HHHHHHHhhccEEEecCCCcCCHHHcCCCCCcccCCCCccc
Confidence 678887777765533 221 100 0 123456889999999999 22211
Q ss_pred hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCccccc-CCceeecceeeE
Q 008476 377 VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHM-GGTMRLGSRRTY 455 (564)
Q Consensus 377 ~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~-GgtmrlG~~~v~ 455 (564)
....+.+++.|+++++|+||||+|||+|+++||+++.. +...... ...|+ +....+..|++.
T Consensus 93 D~~E~aLi~~ALe~~iPILgICRG~QllNVa~GGtL~q--~i~~~~~---------------~~~H~~~~~~~~~~H~V~ 155 (243)
T COG2071 93 DAFELALIRAALERGIPILGICRGLQLLNVALGGTLYQ--DISEQPG---------------HIDHRQPNPVHIESHEVH 155 (243)
T ss_pred cHHHHHHHHHHHHcCCCEEEEccchHHHHHHhcCeeeh--hhhcccc---------------cccccCCCCcccceeEEE
Confidence 13478899999999999999999999999999998743 2211110 01222 223344589999
Q ss_pred eecCCchhhhccCCc-eeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCC
Q 008476 456 FQIKDCKSAKLYGNR-TFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGK 534 (564)
Q Consensus 456 l~~~~s~~~~iyg~~-~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~ 534 (564)
+.++ |.++++++.. ..++..|+ +.+++| ..+|+++|+++||. ||+||++++.|++|||||||+......
T Consensus 156 i~~~-s~La~i~g~~~~~VNS~Hh-------QaIk~L-a~~L~V~A~a~DG~-VEAie~~~~~fvlGVQWHPE~~~~~~~ 225 (243)
T COG2071 156 IEPG-SKLAKILGESEFMVNSFHH-------QAIKKL-APGLVVEARAPDGT-VEAVEVKNDAFVLGVQWHPEYLVDTNP 225 (243)
T ss_pred ecCC-ccHHHhcCccceeecchHH-------HHHHHh-CCCcEEEEECCCCc-EEEEEecCCceEEEEecChhhhccCCh
Confidence 9998 8999999755 56776664 888888 78999999999986 999999999999999999999987763
Q ss_pred -chHHHHHHHHHHhcc
Q 008476 535 -PSPLFLGNISHLYFV 549 (564)
Q Consensus 535 -p~pLF~~Fv~aa~~~ 549 (564)
...||+.|++++...
T Consensus 226 ~~~~LFe~F~~~~~~~ 241 (243)
T COG2071 226 LSLALFEAFVNACKKH 241 (243)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 367999999999765
No 21
>PLN02335 anthranilate synthase
Probab=99.93 E-value=3.1e-25 Score=220.67 Aligned_cols=197 Identities=17% Similarity=0.204 Sum_probs=133.4
Q ss_pred CCceEEEEEeccCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCC
Q 008476 295 HEPVRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 373 (564)
Q Consensus 295 ~~~~~IavVGkY~~~~Day~-SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG 373 (564)
++..+|.+|+.|. +|. ++.+.|+.+|+++.+ ++.+.++.+. -...++|||||+||||
T Consensus 16 ~~~~~ilviD~~d----sft~~i~~~L~~~g~~~~v------~~~~~~~~~~------------~~~~~~d~iVisgGPg 73 (222)
T PLN02335 16 KQNGPIIVIDNYD----SFTYNLCQYMGELGCHFEV------YRNDELTVEE------------LKRKNPRGVLISPGPG 73 (222)
T ss_pred CccCcEEEEECCC----CHHHHHHHHHHHCCCcEEE------EECCCCCHHH------------HHhcCCCEEEEcCCCC
Confidence 3456999995444 444 899999999988866 2322221100 0124689999999999
Q ss_pred CCchhHH-HHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecce
Q 008476 374 NRGVQGK-ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSR 452 (564)
Q Consensus 374 ~r~~eg~-i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~ 452 (564)
++...+. .+.++ +.+.++|+||||||||+|+.++|+++...+. ....|+ ..
T Consensus 74 ~p~d~~~~~~~~~-~~~~~~PiLGIClG~QlLa~alGg~v~~~~~----------------------~~~~G~-----~~ 125 (222)
T PLN02335 74 TPQDSGISLQTVL-ELGPLVPLFGVCMGLQCIGEAFGGKIVRSPF----------------------GVMHGK-----SS 125 (222)
T ss_pred ChhhccchHHHHH-HhCCCCCEEEecHHHHHHHHHhCCEEEeCCC----------------------ccccCc-----ee
Confidence 9864332 23332 3345799999999999999999998843210 011222 22
Q ss_pred eeEeecC--CchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcC
Q 008476 453 RTYFQIK--DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKS 530 (564)
Q Consensus 453 ~v~l~~~--~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss 530 (564)
++...+. ++++..+. . .....++|+|.|+++.++ +.++.++|++.++. +++++++++|+++|+|||||+..
T Consensus 126 ~v~~~~~~~~~Lf~~l~-~--~~~v~~~H~~~v~~~~lp---~~~~~v~a~~~~~~-v~ai~~~~~~~i~GvQfHPE~~~ 198 (222)
T PLN02335 126 PVHYDEKGEEGLFSGLP-N--PFTAGRYHSLVIEKDTFP---SDELEVTAWTEDGL-IMAARHRKYKHIQGVQFHPESII 198 (222)
T ss_pred eeEECCCCCChhhhCCC-C--CCEEEechhheEecccCC---CCceEEEEEcCCCC-EEEEEecCCCCEEEEEeCCCCCC
Confidence 3332221 13444443 1 234678899998765432 34489999988876 99999999998889999999997
Q ss_pred CCCCchHHHHHHHHHHhcc
Q 008476 531 RPGKPSPLFLGNISHLYFV 549 (564)
Q Consensus 531 ~p~~p~pLF~~Fv~aa~~~ 549 (564)
.+ ++..+|++|++++.++
T Consensus 199 ~~-~g~~i~~nF~~~~~~~ 216 (222)
T PLN02335 199 TT-EGKTIVRNFIKIIEKK 216 (222)
T ss_pred Ch-hHHHHHHHHHHHHHhh
Confidence 65 5689999999988654
No 22
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.93 E-value=4.2e-25 Score=214.16 Aligned_cols=183 Identities=20% Similarity=0.227 Sum_probs=128.4
Q ss_pred EEEEeccCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCchh
Q 008476 300 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 378 (564)
Q Consensus 300 IavVGkY~~~~Day~-SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~e 378 (564)
|.+|+.|. +|. ++++.|+..|+++.+ +..+++..++ . ...++||||++||||++...
T Consensus 2 il~idn~D----sft~nl~~~l~~~g~~v~v------~~~~~~~~~~----------~--~~~~~d~iils~GPg~p~~~ 59 (187)
T PRK08007 2 ILLIDNYD----SFTWNLYQYFCELGADVLV------KRNDALTLAD----------I--DALKPQKIVISPGPCTPDEA 59 (187)
T ss_pred EEEEECCC----ccHHHHHHHHHHCCCcEEE------EeCCCCCHHH----------H--HhcCCCEEEEcCCCCChHHC
Confidence 78898776 444 799999999988755 2322221100 0 12378999999999998643
Q ss_pred -HHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeEee
Q 008476 379 -GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (564)
Q Consensus 379 -g~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l~ 457 (564)
..+..++. .+.++|+||||+|||+|+.++|+++.+... ++.|+ ..++...
T Consensus 60 ~~~~~~~~~-~~~~~PiLGIClG~Q~la~a~Gg~v~~~~~-----------------------~~~g~-----~~~v~~~ 110 (187)
T PRK08007 60 GISLDVIRH-YAGRLPILGVCLGHQAMAQAFGGKVVRAAK-----------------------VMHGK-----TSPITHN 110 (187)
T ss_pred CccHHHHHH-hcCCCCEEEECHHHHHHHHHcCCEEEeCCC-----------------------cccCC-----ceEEEEC
Confidence 23455555 467899999999999999999999854221 22343 2334433
Q ss_pred cCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchH
Q 008476 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 537 (564)
Q Consensus 458 ~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~p 537 (564)
.. +++..+. . .+...+.|+|.|++..+ +.+++++|.++++. +++++++++| ++|||||||..+.+ ....
T Consensus 111 ~~-~l~~~~~-~--~~~v~~~H~~~v~~~~l----p~~~~v~a~~~~~~-i~a~~~~~~~-i~GvQfHPE~~~t~-~G~~ 179 (187)
T PRK08007 111 GE-GVFRGLA-N--PLTVTRYHSLVVEPDSL----PACFEVTAWSETRE-IMGIRHRQWD-LEGVQFHPESILSE-QGHQ 179 (187)
T ss_pred CC-CcccCCC-C--CcEEEEcchhEEccCCC----CCCeEEEEEeCCCc-EEEEEeCCCC-EEEEEeCCcccCCc-chHH
Confidence 33 4444442 1 23467788998864433 57899999998886 9999999998 66999999997765 4689
Q ss_pred HHHHHHH
Q 008476 538 LFLGNIS 544 (564)
Q Consensus 538 LF~~Fv~ 544 (564)
+|++|++
T Consensus 180 il~nFl~ 186 (187)
T PRK08007 180 LLANFLH 186 (187)
T ss_pred HHHHHhh
Confidence 9999985
No 23
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.92 E-value=1.7e-24 Score=209.87 Aligned_cols=185 Identities=20% Similarity=0.252 Sum_probs=125.8
Q ss_pred EEEEeccCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCchh
Q 008476 300 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 378 (564)
Q Consensus 300 IavVGkY~~~~Day~-SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~e 378 (564)
|.|++.| |+|. ++.++|+.+|+++.+ ++....+.+ ..+.+ ++||||++||||++...
T Consensus 2 iliid~~----d~f~~~i~~~l~~~g~~~~v------~~~~~~~~~-----------~~~~~-~~dglIlsgGpg~~~d~ 59 (189)
T PRK05670 2 ILLIDNY----DSFTYNLVQYLGELGAEVVV------YRNDEITLE-----------EIEAL-NPDAIVLSPGPGTPAEA 59 (189)
T ss_pred EEEEECC----CchHHHHHHHHHHCCCcEEE------EECCCCCHH-----------HHHhC-CCCEEEEcCCCCChHHc
Confidence 7788543 4655 899999999998865 222111100 01223 48999999999997532
Q ss_pred -HHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeEee
Q 008476 379 -GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (564)
Q Consensus 379 -g~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l~ 457 (564)
.....++. ...++|+||||+|||+|+.++|+++...+. ++.|+ .+++. .
T Consensus 60 ~~~~~~l~~-~~~~~PvLGIClG~Qlla~alGg~v~~~~~-----------------------~~~g~-----~~~v~-~ 109 (189)
T PRK05670 60 GISLELIRE-FAGKVPILGVCLGHQAIGEAFGGKVVRAKE-----------------------IMHGK-----TSPIE-H 109 (189)
T ss_pred chHHHHHHH-hcCCCCEEEECHHHHHHHHHhCCEEEecCC-----------------------cccCc-----eeEEE-e
Confidence 23445554 456899999999999999999998854221 12233 22333 2
Q ss_pred cCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchH
Q 008476 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 537 (564)
Q Consensus 458 ~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~p 537 (564)
.+++++..+. . ....+|.|+|.|++.. + +.+++++|.++++ .+|+++++++| ++|+|||||+...+ +..+
T Consensus 110 ~~~~l~~~~~-~--~~~v~~~H~~~v~~~~---l-p~~~~~la~s~~~-~i~a~~~~~~~-~~gvQfHPE~~~~~-~g~~ 179 (189)
T PRK05670 110 DGSGIFAGLP-N--PFTVTRYHSLVVDRES---L-PDCLEVTAWTDDG-EIMGVRHKELP-IYGVQFHPESILTE-HGHK 179 (189)
T ss_pred CCCchhccCC-C--CcEEEcchhheecccc---C-CCceEEEEEeCCC-cEEEEEECCCC-EEEEeeCCCcCCCc-chHH
Confidence 2223333332 1 2346788999986422 2 5689999998766 49999999999 66999999997654 5789
Q ss_pred HHHHHHHHH
Q 008476 538 LFLGNISHL 546 (564)
Q Consensus 538 LF~~Fv~aa 546 (564)
||++|++++
T Consensus 180 i~~~F~~~~ 188 (189)
T PRK05670 180 LLENFLELA 188 (189)
T ss_pred HHHHHHHhh
Confidence 999999875
No 24
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.92 E-value=5.6e-24 Score=215.66 Aligned_cols=211 Identities=24% Similarity=0.260 Sum_probs=138.7
Q ss_pred ceEEEEEeccCCC----cc-hHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCC
Q 008476 297 PVRIAMVGKYTGL----SD-AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGG 371 (564)
Q Consensus 297 ~~~IavVGkY~~~----~D-ay~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGG 371 (564)
++.|||.+..... .+ ....+++++..+|....+ ++...-++ ....+.++.+||||++||
T Consensus 7 ~P~Igi~~~~~~~~~~~~~~~~~~y~~~i~~aGg~pv~------lp~~~~~~----------~~~~~~l~~~DGlil~GG 70 (254)
T PRK11366 7 NPVIGVVMCRNRLKGHATQTLQEKYLNAIIHAGGLPIA------LPHALAEP----------SLLEQLLPKLDGIYLPGS 70 (254)
T ss_pred CCEEEEeCCCcccCcchHHHHHHHHHHHHHHCCCEEEE------ecCCCCCH----------HHHHHHHHhCCEEEeCCC
Confidence 4679998532111 11 123578899998876422 22110000 012245678999999998
Q ss_pred CCCC-----------ch------hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeee
Q 008476 372 FGNR-----------GV------QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIF 434 (564)
Q Consensus 372 fG~r-----------~~------eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~ 434 (564)
+.+- .. ...+.++++|.++++|+||||+|||+|++++|+++.. +.. +. +..
T Consensus 71 ~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva~GGtl~~--~~~--~~-~~~------- 138 (254)
T PRK11366 71 PSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVATGGSLHR--KLC--EQ-PEL------- 138 (254)
T ss_pred CCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHhCCeEee--ccc--cc-ccc-------
Confidence 6431 11 3457889999999999999999999999999999853 210 00 000
Q ss_pred cCCCccccc-CCc-----eeecceeeEeecCCchhhhccCCce--eEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCC
Q 008476 435 MPEGSKTHM-GGT-----MRLGSRRTYFQIKDCKSAKLYGNRT--FIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQ 506 (564)
Q Consensus 435 m~e~~~~~~-Ggt-----mrlG~~~v~l~~~~s~~~~iyg~~~--~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~ 506 (564)
..|. ... ...+.+.+.+.++ +++..++++.. .++.+|+ +.++.+ +.+++++|+++||.
T Consensus 139 -----~~h~~~~~~~~~~~~~~~h~v~~~~~-s~l~~i~~~~~~~~Vns~H~-------q~V~~l-~~gl~v~A~s~dg~ 204 (254)
T PRK11366 139 -----LEHREDPELPVEQQYAPSHEVQVEEG-GLLSALLPECSNFWVNSLHG-------QGAKVV-SPRLRVEARSPDGL 204 (254)
T ss_pred -----cccccCCccccccccCCceEEEECCC-CcHHHhcCCCceEEeehHHH-------HHHhhc-ccceEEEEEcCCCc
Confidence 0010 000 0012477777776 78888874222 3444442 556666 78999999999886
Q ss_pred eEEEEEeCCCCcEEEEcccCCCcCCCCCc-hHHHHHHHHHHhccC
Q 008476 507 RMEIVELPNHPYFIGVQFHPEYKSRPGKP-SPLFLGNISHLYFVC 550 (564)
Q Consensus 507 ~vE~ie~~~~pffiGvQFHPE~ss~p~~p-~pLF~~Fv~aa~~~~ 550 (564)
+|++|++++||++|||||||+...+... ..||++|+++|+.+.
T Consensus 205 -ieAie~~~~~~~~GVQwHPE~~~~~~~~~~~lf~~fv~~~~~~~ 248 (254)
T PRK11366 205 -VEAVSVINHPFALGVQWHPEWNSSEYALSRILFEGFITACQHHI 248 (254)
T ss_pred -EEEEEeCCCCCEEEEEeCCCcCCCCCchHHHHHHHHHHHHHHHH
Confidence 9999999999989999999998765433 579999999997643
No 25
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.92 E-value=4.4e-24 Score=207.08 Aligned_cols=184 Identities=17% Similarity=0.244 Sum_probs=129.3
Q ss_pred EEEEeccCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCch-
Q 008476 300 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV- 377 (564)
Q Consensus 300 IavVGkY~~~~Day~-SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~- 377 (564)
|.+|+.|. +|. ++++.|+..|+.+.+ ++..+.. .++. +. .++|||||+||||++..
T Consensus 2 il~id~~d----sft~~~~~~l~~~g~~v~v------~~~~~~~----------~~~~-~~-~~~d~iilsgGpg~p~~~ 59 (188)
T TIGR00566 2 VLMIDNYD----SFTYNLVQYFCELGAEVVV------KRNDSLT----------LQEI-EA-LLPLLIVISPGPCTPNEA 59 (188)
T ss_pred EEEEECCc----CHHHHHHHHHHHcCCceEE------EECCCCC----------HHHH-Hh-cCCCEEEEcCCCCChhhc
Confidence 77886555 665 899999999988755 2211110 0001 11 26899999999999853
Q ss_pred hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeEee
Q 008476 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (564)
Q Consensus 378 eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l~ 457 (564)
......++++ .+++|+||||+|||+|+.++|++|.+.+. ...|+ ..++...
T Consensus 60 ~~~~~~i~~~-~~~~PvLGIC~G~Qll~~~~GG~v~~~~~-----------------------~~~g~-----~~~v~~~ 110 (188)
T TIGR00566 60 GISLEAIRHF-AGKLPILGVCLGHQAMGQAFGGDVVRANT-----------------------VMHGK-----TSEIEHN 110 (188)
T ss_pred chhHHHHHHh-ccCCCEEEECHHHHHHHHHcCCEEeeCCC-----------------------ccccc-----eEEEEEC
Confidence 2236677777 67899999999999999999999854210 11233 2344444
Q ss_pred cCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchH
Q 008476 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 537 (564)
Q Consensus 458 ~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~p 537 (564)
+. +++..+.+ + ....+.|++.|+++.+ +.+++++|.+.++..+++++++++| ++|+|||||....+ ....
T Consensus 111 ~~-~~~~~l~~-~--~~v~~~H~~~v~~~~l----~~~~~v~a~s~~~~~v~a~~~~~~~-i~gvQfHPE~~~t~-~G~~ 180 (188)
T TIGR00566 111 GA-GIFRGLFN-P--LTATRYHSLVVEPETL----PTCFPVTAWEEENIEIMAIRHRDLP-LEGVQFHPESILSE-QGHQ 180 (188)
T ss_pred CC-ccccCCCC-C--cEEEEcccceEecccC----CCceEEEEEcCCCCEEEEEEeCCCC-EEEEEeCCCccCCc-ccHH
Confidence 33 45555553 2 3467889999875443 5689999998775469999999999 56999999997764 4689
Q ss_pred HHHHHHH
Q 008476 538 LFLGNIS 544 (564)
Q Consensus 538 LF~~Fv~ 544 (564)
+|++|++
T Consensus 181 il~nfl~ 187 (188)
T TIGR00566 181 LLANFLH 187 (188)
T ss_pred HHHHHHh
Confidence 9999985
No 26
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.92 E-value=5.6e-24 Score=204.16 Aligned_cols=188 Identities=22% Similarity=0.296 Sum_probs=135.8
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCch
Q 008476 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (564)
Q Consensus 298 ~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~ 377 (564)
++|.+++.|.++ .| ++++.|+..|+++.+. .+ ++++.. .-...++|+|++|+|||.|..
T Consensus 2 ~~IL~IDNyDSF--ty-NLv~yl~~lg~~v~V~-----rn-d~~~~~------------~~~~~~pd~iviSPGPG~P~d 60 (191)
T COG0512 2 MMILLIDNYDSF--TY-NLVQYLRELGAEVTVV-----RN-DDISLE------------LIEALKPDAIVISPGPGTPKD 60 (191)
T ss_pred ceEEEEECccch--HH-HHHHHHHHcCCceEEE-----EC-CccCHH------------HHhhcCCCEEEEcCCCCChHH
Confidence 479999988755 23 8999999999777652 11 122110 012346899999999999986
Q ss_pred hH-HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeEe
Q 008476 378 QG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 456 (564)
Q Consensus 378 eg-~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l 456 (564)
.| ..++++.+ ..++|+||||||||.|+.+||++|-..+. +-.|.+ ....
T Consensus 61 ~G~~~~~i~~~-~~~~PiLGVCLGHQai~~~fGg~V~~a~~-----------------------~~HGK~------s~i~ 110 (191)
T COG0512 61 AGISLELIRRF-AGRIPILGVCLGHQAIAEAFGGKVVRAKE-----------------------PMHGKT------SIIT 110 (191)
T ss_pred cchHHHHHHHh-cCCCCEEEECccHHHHHHHhCCEEEecCC-----------------------CcCCee------eeee
Confidence 55 67778887 66899999999999999999999844221 112332 1111
Q ss_pred ecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCch
Q 008476 457 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 536 (564)
Q Consensus 457 ~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~ 536 (564)
..+..+++.+. +...+ .|+ |+..++++.+ +..++++|++.|+..+++++++++|. +|||||||.--++. .+
T Consensus 111 h~g~~iF~glp-~~f~v-~RY-HSLvv~~~~l----P~~l~vtA~~~d~~~IMai~h~~~pi-~gvQFHPESilT~~-G~ 181 (191)
T COG0512 111 HDGSGLFAGLP-NPFTV-TRY-HSLVVDPETL----PEELEVTAESEDGGVIMAVRHKKLPI-YGVQFHPESILTEY-GH 181 (191)
T ss_pred cCCcccccCCC-CCCEE-Eee-EEEEecCCCC----CCceEEEEEeCCCCEEEEEeeCCCCE-EEEecCCccccccc-hH
Confidence 22224555665 23333 666 8888887665 46899999998887799999999995 59999999987775 58
Q ss_pred HHHHHHHHH
Q 008476 537 PLFLGNISH 545 (564)
Q Consensus 537 pLF~~Fv~a 545 (564)
.++++|++.
T Consensus 182 ~il~Nfl~~ 190 (191)
T COG0512 182 RILENFLRL 190 (191)
T ss_pred HHHHHHHhh
Confidence 999999975
No 27
>CHL00101 trpG anthranilate synthase component 2
Probab=99.92 E-value=3.8e-24 Score=207.81 Aligned_cols=186 Identities=19% Similarity=0.245 Sum_probs=126.8
Q ss_pred EEEEeccCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHH-hccCCCEEEeCCCCCCCch
Q 008476 300 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK-LLKGADGILVPGGFGNRGV 377 (564)
Q Consensus 300 IavVGkY~~~~Day~-SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~-~L~~~DGIllpGGfG~r~~ 377 (564)
|.+++.|. +|. ++.+.|+..|+++.+ ++..+.+. .+ ...++||||++||||++..
T Consensus 2 iliid~~d----sft~~l~~~l~~~g~~~~v------~~~~~~~~-------------~~~~~~~~dgiiisgGpg~~~~ 58 (190)
T CHL00101 2 ILIIDNYD----SFTYNLVQSLGELNSDVLV------CRNDEIDL-------------SKIKNLNIRHIIISPGPGHPRD 58 (190)
T ss_pred EEEEECCC----chHHHHHHHHHhcCCCEEE------EECCCCCH-------------HHHhhCCCCEEEECCCCCChHH
Confidence 77885443 555 799999999988755 33222210 01 1257999999999999754
Q ss_pred hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeEee
Q 008476 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (564)
Q Consensus 378 eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l~ 457 (564)
.+....+..+.+.++|+||||+|||+|+.++|++|.+.+. +..|++ ..+. .
T Consensus 59 ~~~~~~i~~~~~~~~PiLGIClG~Qlla~~~Gg~V~~~~~-----------------------~~~g~~-----~~~~-~ 109 (190)
T CHL00101 59 SGISLDVISSYAPYIPILGVCLGHQSIGYLFGGKIIKAPK-----------------------PMHGKT-----SKIY-H 109 (190)
T ss_pred CcchHHHHHHhcCCCcEEEEchhHHHHHHHhCCEEEECCC-----------------------cccCce-----eeEe-e
Confidence 3333334445678999999999999999999999854321 122332 1111 1
Q ss_pred cCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchH
Q 008476 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 537 (564)
Q Consensus 458 ~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~p 537 (564)
..+.++..+. .....++.|+|.|++..+ +.++.++|.++++. +++++++++||++|+|||||.+..+ ....
T Consensus 110 ~~~~l~~~~~---~~~~v~~~H~~~v~~~~l----p~~~~vla~s~~~~-v~a~~~~~~~~i~gvQfHPE~~~~~-~g~~ 180 (190)
T CHL00101 110 NHDDLFQGLP---NPFTATRYHSLIIDPLNL----PSPLEITAWTEDGL-IMACRHKKYKMLRGIQFHPESLLTT-HGQQ 180 (190)
T ss_pred CCcHhhccCC---CceEEEcchhheeecccC----CCceEEEEEcCCCc-EEEEEeCCCCCEEEEEeCCccCCCh-hHHH
Confidence 2212333332 123467889999864322 46899999988876 9999999999888999999997554 4578
Q ss_pred HHHHHHHHH
Q 008476 538 LFLGNISHL 546 (564)
Q Consensus 538 LF~~Fv~aa 546 (564)
||++|++..
T Consensus 181 l~~nf~~~~ 189 (190)
T CHL00101 181 ILRNFLSLS 189 (190)
T ss_pred HHHHHHhhh
Confidence 999998743
No 28
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.92 E-value=8.4e-24 Score=205.22 Aligned_cols=186 Identities=16% Similarity=0.211 Sum_probs=128.8
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCch
Q 008476 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (564)
Q Consensus 298 ~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~ 377 (564)
+||.+++.|.+. +| ++.++|+.+|+++.+ +...+.+ .+.++++|||||+||+|.+..
T Consensus 2 ~~iliid~~dsf--~~-~i~~~l~~~g~~~~v------~~~~~~~--------------~~~l~~~d~iIi~gGp~~~~~ 58 (190)
T PRK06895 2 TKLLIINNHDSF--TF-NLVDLIRKLGVPMQV------VNVEDLD--------------LDEVENFSHILISPGPDVPRA 58 (190)
T ss_pred cEEEEEeCCCch--HH-HHHHHHHHcCCcEEE------EECCccC--------------hhHhccCCEEEECCCCCChHH
Confidence 589999766644 34 599999999988765 2222111 135678999999999997643
Q ss_pred -hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeEe
Q 008476 378 -QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 456 (564)
Q Consensus 378 -eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l 456 (564)
....+.++. .+.++|+||||||||+|+.++|++|..++ ...|.++ .++..
T Consensus 59 ~~~~~~~i~~-~~~~~PiLGIClG~Qlla~~~Gg~V~~~~----------------------~~~~g~~------~~v~~ 109 (190)
T PRK06895 59 YPQLFAMLER-YHQHKSILGVCLGHQTLCEFFGGELYNLN----------------------NVRHGQQ------RPLKV 109 (190)
T ss_pred hhHHHHHHHH-hcCCCCEEEEcHHHHHHHHHhCCeEeecC----------------------CCccCce------EEEEE
Confidence 334455554 46789999999999999999999984321 0123222 23333
Q ss_pred ecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCch
Q 008476 457 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 536 (564)
Q Consensus 457 ~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~ 536 (564)
.+++.++..+- . ....++.|+|.+.+..+ +.++..++.+.++. +++++++++| ++|+|||||+.+.+. ..
T Consensus 110 ~~~~~l~~~~~-~--~~~v~~~Hs~~v~~~~l----p~~l~~~a~~~~~~-i~a~~~~~~p-i~GvQFHPE~~~~~~-g~ 179 (190)
T PRK06895 110 RSNSPLFDGLP-E--EFNIGLYHSWAVSEENF----PTPLEITAVCDENV-VMAMQHKTLP-IYGVQFHPESYISEF-GE 179 (190)
T ss_pred CCCChhhhcCC-C--ceEEEcchhheeccccc----CCCeEEEEECCCCc-EEEEEECCCC-EEEEEeCCCcCCCcc-hH
Confidence 33323443332 2 23467889999875433 35788888876664 9999999999 669999999977775 46
Q ss_pred HHHHHHHHH
Q 008476 537 PLFLGNISH 545 (564)
Q Consensus 537 pLF~~Fv~a 545 (564)
.++++|++.
T Consensus 180 ~il~nf~~~ 188 (190)
T PRK06895 180 QILRNWLAI 188 (190)
T ss_pred HHHHHHHhh
Confidence 799999874
No 29
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.92 E-value=6.2e-24 Score=207.39 Aligned_cols=187 Identities=19% Similarity=0.234 Sum_probs=127.7
Q ss_pred EEEEeccCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCchh
Q 008476 300 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 378 (564)
Q Consensus 300 IavVGkY~~~~Day~-SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~e 378 (564)
|.+|+.|. +|. ++++.|+..|+++.+ +..++...+ . + ...++||||++||||++...
T Consensus 2 il~idn~d----sft~nl~~~l~~~g~~v~v------~~~~~~~~~-------~---~--~~~~~d~iIlsgGP~~p~~~ 59 (195)
T PRK07649 2 ILMIDNYD----SFTFNLVQFLGELGQELVV------KRNDEVTIS-------D---I--ENMKPDFLMISPGPCSPNEA 59 (195)
T ss_pred EEEEeCCC----ccHHHHHHHHHHCCCcEEE------EeCCCCCHH-------H---H--hhCCCCEEEECCCCCChHhC
Confidence 77887665 555 799999999988765 232222100 0 0 12478999999999997543
Q ss_pred H-HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeEee
Q 008476 379 G-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (564)
Q Consensus 379 g-~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l~ 457 (564)
+ ....++. .+.++|+||||||||+|+.++|++|.+.+. .+.|++ .++..
T Consensus 60 ~~~~~~i~~-~~~~~PvLGIClG~Qlla~~lGg~V~~~~~-----------------------~~~G~~-----~~i~~- 109 (195)
T PRK07649 60 GISMEVIRY-FAGKIPIFGVCLGHQSIAQVFGGEVVRAER-----------------------LMHGKT-----SLMHH- 109 (195)
T ss_pred CCchHHHHH-hcCCCCEEEEcHHHHHHHHHcCCEEeeCCC-----------------------cccCCe-----EEEEE-
Confidence 2 3344443 356899999999999999999999854321 122432 22222
Q ss_pred cCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchH
Q 008476 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 537 (564)
Q Consensus 458 ~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~p 537 (564)
.+++++..+.. . ....++|++.+.+..+ +.+++++|.++++. +++++++++| ++|+|||||...++ ....
T Consensus 110 ~~~~lf~~~~~-~--~~v~~~H~~~v~~~~l----p~~~~~~a~s~~~~-v~a~~~~~~~-i~gvQFHPE~~~t~-~g~~ 179 (195)
T PRK07649 110 DGKTIFSDIPN-P--FTATRYHSLIVKKETL----PDCLEVTSWTEEGE-IMAIRHKTLP-IEGVQFHPESIMTS-HGKE 179 (195)
T ss_pred CCChhhcCCCC-C--CEEEEechheEecccC----CCCeEEEEEcCCCc-EEEEEECCCC-EEEEEECCCCCCCc-cHHH
Confidence 22244444431 2 3467888888753322 56899999988876 9999999999 56999999987665 4679
Q ss_pred HHHHHHHHHhc
Q 008476 538 LFLGNISHLYF 548 (564)
Q Consensus 538 LF~~Fv~aa~~ 548 (564)
+|++|++....
T Consensus 180 il~nfl~~~~~ 190 (195)
T PRK07649 180 LLQNFIRKYSP 190 (195)
T ss_pred HHHHHHHHhHh
Confidence 99999987644
No 30
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.92 E-value=8.2e-24 Score=204.61 Aligned_cols=181 Identities=20% Similarity=0.220 Sum_probs=127.9
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhcc--CCCEEEeCCCCCCCch
Q 008476 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK--GADGILVPGGFGNRGV 377 (564)
Q Consensus 300 IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~--~~DGIllpGGfG~r~~ 377 (564)
|++| ||+.. .-.++.++|+..|+++.+ .+.+++ . +.+. ++||||+|||+++...
T Consensus 1 i~ii-D~g~~--~~~~l~~~l~~~g~~~~~----~~~~~~-~----------------~~~~~~~~~glii~Gg~~~~~~ 56 (188)
T TIGR00888 1 ILVL-DFGSQ--YTQLIARRLRELGVYSEL----VPNTTP-L----------------EEIREKNPKGIILSGGPSSVYA 56 (188)
T ss_pred CEEE-ECCch--HHHHHHHHHHHcCCEEEE----EeCCCC-H----------------HHHhhcCCCEEEECCCCCCcCc
Confidence 5788 77743 345899999999987754 122211 1 1222 3569999999988665
Q ss_pred hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeEee
Q 008476 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (564)
Q Consensus 378 eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l~ 457 (564)
......++.+.+.++|+||||+|||+|+.++|+++...+ .+++|+ .++.+.
T Consensus 57 ~~~~~~i~~~~~~~~PilGIC~G~Qll~~~lgg~v~~~~-----------------------~~~~g~------~~v~~~ 107 (188)
T TIGR00888 57 ENAPRADEKIFELGVPVLGICYGMQLMAKQLGGEVGRAE-----------------------KREYGK------AELEIL 107 (188)
T ss_pred CCchHHHHHHHhCCCCEEEECHHHHHHHHhcCceEecCC-----------------------Ccccee------EEEEEe
Confidence 556677888889999999999999999999999885321 123343 445544
Q ss_pred cCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchH
Q 008476 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 537 (564)
Q Consensus 458 ~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~p 537 (564)
+.+.++..+- ..+..++.|+|.+. .+ +.+++++|.+.++. ++++++++.| ++|+|||||++.++ +...
T Consensus 108 ~~~~l~~~~~---~~~~~~~~H~~~v~-----~l-~~~~~vla~~~~~~-v~a~~~~~~~-~~g~QfHPE~~~~~-~g~~ 175 (188)
T TIGR00888 108 DEDDLFRGLP---DESTVWMSHGDKVK-----EL-PEGFKVLATSDNCP-VAAMAHEEKP-IYGVQFHPEVTHTE-YGNE 175 (188)
T ss_pred cCCHhhcCCC---CCcEEEeEccceee-----cC-CCCCEEEEECCCCC-eEEEEECCCC-EEEEeeCCccCCCh-hhHH
Confidence 4423332221 23445677888863 23 56889999987664 9999999988 56999999998775 3689
Q ss_pred HHHHHHHH
Q 008476 538 LFLGNISH 545 (564)
Q Consensus 538 LF~~Fv~a 545 (564)
+|++|+++
T Consensus 176 i~~~f~~~ 183 (188)
T TIGR00888 176 LLENFVYD 183 (188)
T ss_pred HHHHHHHH
Confidence 99999985
No 31
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.91 E-value=2.7e-23 Score=200.21 Aligned_cols=183 Identities=21% Similarity=0.261 Sum_probs=124.7
Q ss_pred EEEEeccCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCchh
Q 008476 300 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 378 (564)
Q Consensus 300 IavVGkY~~~~Day~-SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~e 378 (564)
|.+++.|+ .|. .+.++|+.+|+++.+ ++.++-.+ ....+.++||||++||+|++...
T Consensus 1 il~~~~~~----~~~~~~~~~l~~~G~~~~~------~~~~~~~~------------~~~~~~~~dgvil~gG~~~~~~~ 58 (184)
T cd01743 1 ILLIDNYD----SFTYNLVQYLRELGAEVVV------VRNDEITL------------EELELLNPDAIVISPGPGHPEDA 58 (184)
T ss_pred CEEEeCCC----ccHHHHHHHHHHcCCceEE------EeCCCCCH------------HHHhhcCCCEEEECCCCCCcccc
Confidence 45664444 444 688899999988755 22221110 01235789999999999987544
Q ss_pred HHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeEeec
Q 008476 379 GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQI 458 (564)
Q Consensus 379 g~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l~~ 458 (564)
.....++.+.++++|+||||+|||+|+.++|+++...+ ....|+ .+++.+.+
T Consensus 59 ~~~~~i~~~~~~~~PvlGIC~G~Qlla~~~Gg~v~~~~-----------------------~~~~g~-----~~~v~~~~ 110 (184)
T cd01743 59 GISLEIIRALAGKVPILGVCLGHQAIAEAFGGKVVRAP-----------------------EPMHGK-----TSEIHHDG 110 (184)
T ss_pred hhHHHHHHHHhcCCCEEEECHhHHHHHHHhCCEEEeCC-----------------------CCCcCc-----eeEEEECC
Confidence 44555555567789999999999999999999884321 112233 33444443
Q ss_pred CCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHH
Q 008476 459 KDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPL 538 (564)
Q Consensus 459 ~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~pL 538 (564)
. +++..+. ......+.|+|.|+.... ..++.++|.++++ .+++++++++| ++|+|||||+.+.+. ...|
T Consensus 111 ~-~~~~~~~---~~~~~~~~H~~~v~~~~~----~~~~~~la~~~~~-~v~a~~~~~~~-i~gvQfHPE~~~~~~-g~~l 179 (184)
T cd01743 111 S-GLFKGLP---QPFTVGRYHSLVVDPDPL----PDLLEVTASTEDG-VIMALRHRDLP-IYGVQFHPESILTEY-GLRL 179 (184)
T ss_pred C-ccccCCC---CCcEEEeCcEEEEecCCC----CceEEEEEeCCCC-eEEEEEeCCCC-EEEEeeCCCcCCCcc-hHHH
Confidence 3 3444332 123578889999864321 1248888988877 49999999999 569999999988875 7899
Q ss_pred HHHHH
Q 008476 539 FLGNI 543 (564)
Q Consensus 539 F~~Fv 543 (564)
|++|+
T Consensus 180 ~~~f~ 184 (184)
T cd01743 180 LENFL 184 (184)
T ss_pred HHhhC
Confidence 99994
No 32
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.91 E-value=2.4e-23 Score=202.05 Aligned_cols=182 Identities=16% Similarity=0.257 Sum_probs=120.3
Q ss_pred EEEEeccCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhc--cCCCEEEeCCCCCCCc
Q 008476 300 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGNRG 376 (564)
Q Consensus 300 IavVGkY~~~~Day~-SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L--~~~DGIllpGGfG~r~ 376 (564)
|.+|+.|+ +|. ++++.|+..|+++.+ +..++... +.+ .++||||++||||++.
T Consensus 2 il~id~~d----sf~~nl~~~l~~~~~~~~v------~~~~~~~~--------------~~~~~~~~~~iilsgGP~~~~ 57 (191)
T PRK06774 2 LLLIDNYD----SFTYNLYQYFCELGTEVMV------KRNDELQL--------------TDIEQLAPSHLVISPGPCTPN 57 (191)
T ss_pred EEEEECCC----chHHHHHHHHHHCCCcEEE------EeCCCCCH--------------HHHHhcCCCeEEEcCCCCChH
Confidence 77886555 555 799999999988765 33322211 112 3789999999999975
Q ss_pred hhH-HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeE
Q 008476 377 VQG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 455 (564)
Q Consensus 377 ~eg-~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~ 455 (564)
..+ ....++. .+.++|+||||+|||+|+.++|+++..... ...|++ .+.
T Consensus 58 ~~~~~~~~i~~-~~~~~PiLGIC~G~Qlla~~~GG~v~~~~~-----------------------~~~G~~------~~~ 107 (191)
T PRK06774 58 EAGISLAVIRH-FADKLPILGVCLGHQALGQAFGARVVRARQ-----------------------VMHGKT------SAI 107 (191)
T ss_pred hCCCchHHHHH-hcCCCCEEEECHHHHHHHHHhCCEEEeCCc-----------------------ceecce------EEE
Confidence 432 3344443 467899999999999999999999853210 112331 222
Q ss_pred eecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCe---EEEEEeCCCCcEEEEcccCCCcCCC
Q 008476 456 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQR---MEIVELPNHPYFIGVQFHPEYKSRP 532 (564)
Q Consensus 456 l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~---vE~ie~~~~pffiGvQFHPE~ss~p 532 (564)
....++++..+. .. ...++.|+|.+++..+ +.++.++|.+.++.. ++++++++.| ++|+|||||+.+.+
T Consensus 108 ~~~~~~lf~~l~-~~--~~v~~~Hs~~v~~~~l----p~~~~vlA~s~~d~~~~~i~~~~~~~~~-i~GvQfHPE~~~~~ 179 (191)
T PRK06774 108 CHSGQGVFRGLN-QP--LTVTRYHSLVIAADSL----PGCFELTAWSERGGEMDEIMGIRHRTLP-LEGVQFHPESILSE 179 (191)
T ss_pred EecCchhhcCCC-CC--cEEEEeCcceeeccCC----CCCeEEEEEeCCCCCcceEEEEEeCCCC-EEEEEECCCcCCCc
Confidence 222223343332 12 3457778888864322 468999999875432 5567788777 56999999997766
Q ss_pred CCchHHHHHHHH
Q 008476 533 GKPSPLFLGNIS 544 (564)
Q Consensus 533 ~~p~pLF~~Fv~ 544 (564)
....+|++|++
T Consensus 180 -~G~~i~~nf~~ 190 (191)
T PRK06774 180 -QGHQLLDNFLK 190 (191)
T ss_pred -cHHHHHHHHhh
Confidence 45899999985
No 33
>PRK00758 GMP synthase subunit A; Validated
Probab=99.90 E-value=6.8e-23 Score=197.56 Aligned_cols=181 Identities=24% Similarity=0.289 Sum_probs=122.0
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCC-CEEEeCCCCCCCchh
Q 008476 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGA-DGILVPGGFGNRGVQ 378 (564)
Q Consensus 300 IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~-DGIllpGGfG~r~~e 378 (564)
|+|+ ||+.. .-.++.++|+.+|+++.+ ++.+. . .+.+.++ ||||+|||+....
T Consensus 2 i~ii-d~~~~--~~~~i~~~l~~~g~~~~~------~~~~~-~--------------~~~l~~~~dgivi~Gg~~~~~-- 55 (184)
T PRK00758 2 IVVV-DNGGQ--YNHLIHRTLRYLGVDAKI------IPNTT-P--------------VEEIKAFEDGLILSGGPDIER-- 55 (184)
T ss_pred EEEE-ECCCc--hHHHHHHHHHHcCCcEEE------EECCC-C--------------HHHHhhcCCEEEECCCCChhh--
Confidence 7888 55422 234789999999987643 22211 0 0345666 9999999983221
Q ss_pred HHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeEeec
Q 008476 379 GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQI 458 (564)
Q Consensus 379 g~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l~~ 458 (564)
.....+.+++.++|+||||+|||+|+.++|+++...+ .++. |..++.+.+
T Consensus 56 -~~~~~~~l~~~~~PilGIC~G~Q~L~~a~Gg~v~~~~-----------------------~~~~------g~~~i~~~~ 105 (184)
T PRK00758 56 -AGNCPEYLKELDVPILGICLGHQLIAKAFGGEVGRGE-----------------------YGEY------ALVEVEILD 105 (184)
T ss_pred -ccccHHHHHhCCCCEEEEeHHHHHHHHhcCcEEecCC-----------------------Ccee------eeEEEEEcC
Confidence 1122334446789999999999999999999884321 0122 234444444
Q ss_pred CCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHH
Q 008476 459 KDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPL 538 (564)
Q Consensus 459 ~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~pL 538 (564)
.+.++..+. . .+..++.|+|.+. .+ +.+++++|.++++. +++++++++| ++|+|||||++.++ +...|
T Consensus 106 ~~~l~~~~~-~--~~~~~~~H~~~v~-----~l-~~~~~~la~~~~~~-v~a~~~~~~~-~~g~QfHPE~~~~~-~g~~l 173 (184)
T PRK00758 106 EDDILKGLP-P--EIRVWASHADEVK-----EL-PDGFEILARSDICE-VEAMKHKEKP-IYGVQFHPEVAHTE-YGEEI 173 (184)
T ss_pred CChhhhCCC-C--CcEEEeehhhhhh-----hC-CCCCEEEEECCCCC-EEEEEECCCC-EEEEEcCCccCCCc-hHHHH
Confidence 334444432 2 2345677877653 33 56899999998886 9999999998 67999999998764 45799
Q ss_pred HHHHHHHHhc
Q 008476 539 FLGNISHLYF 548 (564)
Q Consensus 539 F~~Fv~aa~~ 548 (564)
|++|++.+.+
T Consensus 174 ~~~f~~~~~~ 183 (184)
T PRK00758 174 FKNFLEICGK 183 (184)
T ss_pred HHHHHHHHcc
Confidence 9999987654
No 34
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.90 E-value=9.2e-23 Score=201.90 Aligned_cols=190 Identities=21% Similarity=0.263 Sum_probs=130.7
Q ss_pred eEEEEEeccCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCc
Q 008476 298 VRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (564)
Q Consensus 298 ~~IavVGkY~~~~Day~-SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~ 376 (564)
++|.+++.|. ++. ++.+.|+..|+++.+. ..+...++ ...+.++++|||||+|||+++.
T Consensus 1 ~~ilv~d~~~----~~~~~~~~~l~~~G~~~~~~----~~~~~~~~------------~~~~~~~~~dgliisGGp~~~~ 60 (214)
T PRK07765 1 MRILVVDNYD----SFVFNLVQYLGQLGVEAEVW----RNDDPRLA------------DEAAVAAQFDGVLLSPGPGTPE 60 (214)
T ss_pred CeEEEEECCC----cHHHHHHHHHHHcCCcEEEE----ECCCcCHH------------HHHHhhcCCCEEEECCCCCChh
Confidence 4788886554 333 6788999999887551 11111110 1113356899999999999875
Q ss_pred h-hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeE
Q 008476 377 V-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 455 (564)
Q Consensus 377 ~-eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~ 455 (564)
. ...+..++++.++++|+||||+|||+|+.++|+++.+.+ .+..|+ .+.+.
T Consensus 61 ~~~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a~GG~v~~~~-----------------------~~~~g~-----~~~v~ 112 (214)
T PRK07765 61 RAGASIDMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRAP-----------------------ELLHGK-----TSSVH 112 (214)
T ss_pred hcchHHHHHHHHHhCCCCEEEEccCHHHHHHHhCCEEeeCC-----------------------CCccCc-----eeEEE
Confidence 3 345688999999999999999999999999999985421 011233 23333
Q ss_pred eecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCc
Q 008476 456 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKP 535 (564)
Q Consensus 456 l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~p 535 (564)
+... +++..+. .....++.|+|.+.+..+ +.++.++|.+.++. +++++++++| ++|+|||||..... +.
T Consensus 113 ~~~~-~~~~~~~---~~~~v~~~H~~~v~~~~l----p~~~~vla~s~~~~-vqa~~~~~~~-i~gvQfHPE~~~t~-~g 181 (214)
T PRK07765 113 HTGV-GVLAGLP---DPFTATRYHSLTILPETL----PAELEVTARTDSGV-IMAVRHRELP-IHGVQFHPESVLTE-GG 181 (214)
T ss_pred ECCC-ccccCCC---CccEEEecchheEecccC----CCceEEEEEcCCCc-EEEEEeCCCC-EEEEeeCCCcccCc-ch
Confidence 3333 3343332 123467889998875433 56899999998876 9999999999 67999999987443 23
Q ss_pred hHHHHHHHHHH
Q 008476 536 SPLFLGNISHL 546 (564)
Q Consensus 536 ~pLF~~Fv~aa 546 (564)
..++.+|++.|
T Consensus 182 ~~~l~~f~~~~ 192 (214)
T PRK07765 182 HRMLANWLTVC 192 (214)
T ss_pred HHHHHHHHHHh
Confidence 56788887654
No 35
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.90 E-value=6.3e-23 Score=196.54 Aligned_cols=181 Identities=20% Similarity=0.212 Sum_probs=122.1
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhH
Q 008476 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQG 379 (564)
Q Consensus 300 IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~eg 379 (564)
|+++ ||+.. .-.++.++|+.+|+.+.+ +.| +.. .+ ...+.++||||+|||+++...+.
T Consensus 1 i~~i-D~g~~--~~~~~~~~l~~~G~~~~~---~~~-~~~-~~--------------~~~~~~~dgvIl~Gg~~~~~~~~ 58 (181)
T cd01742 1 ILIL-DFGSQ--YTHLIARRVRELGVYSEI---LPN-TTP-LE--------------EIKLKNPKGIILSGGPSSVYEED 58 (181)
T ss_pred CEEE-ECCCc--hHHHHHHHHHhcCceEEE---ecC-CCC-hh--------------hhcccCCCEEEECCCcccccccc
Confidence 5678 67633 224789999999987644 111 110 00 02467899999999988653332
Q ss_pred HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeEeecC
Q 008476 380 KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIK 459 (564)
Q Consensus 380 ~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l~~~ 459 (564)
.....+.+.+.++|+||||+|||+|+.++|+++.... .+++|+ .++.+.++
T Consensus 59 ~~~~~~~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~-----------------------~~~~G~------~~v~~~~~ 109 (181)
T cd01742 59 APRVDPEIFELGVPVLGICYGMQLIAKALGGKVERGD-----------------------KREYGK------AEIEIDDS 109 (181)
T ss_pred cchhhHHHHhcCCCEEEEcHHHHHHHHhcCCeEEeCC-----------------------CCcceE------EEEEecCC
Confidence 3345567777899999999999999999998874321 123343 33333333
Q ss_pred CchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHH
Q 008476 460 DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLF 539 (564)
Q Consensus 460 ~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~pLF 539 (564)
+.++..+- . .+..++.|+|+|. .+ +.++.++|.++++. ++++++++.| ++|+|||||++..+ +...+|
T Consensus 110 ~~l~~~~~-~--~~~~~~~H~~~v~-----~l-~~~~~~la~~~~~~-i~a~~~~~~~-~~g~QfHPE~~~~~-~g~~ll 177 (181)
T cd01742 110 SPLFEGLP-D--EQTVWMSHGDEVV-----KL-PEGFKVIASSDNCP-VAAIANEEKK-IYGVQFHPEVTHTE-KGKEIL 177 (181)
T ss_pred ChhhcCCC-C--ceEEEcchhhhhh-----hc-CCCcEEEEeCCCCC-EEEEEeCCCc-EEEEEcCCccccCc-ChHHHH
Confidence 23333332 1 2345678887662 33 56889999988765 9999999888 57999999999875 568899
Q ss_pred HHHH
Q 008476 540 LGNI 543 (564)
Q Consensus 540 ~~Fv 543 (564)
++|+
T Consensus 178 ~~f~ 181 (181)
T cd01742 178 KNFL 181 (181)
T ss_pred HhhC
Confidence 9984
No 36
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.90 E-value=1.6e-22 Score=196.79 Aligned_cols=185 Identities=18% Similarity=0.258 Sum_probs=123.5
Q ss_pred EEEEeccCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCchh
Q 008476 300 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 378 (564)
Q Consensus 300 IavVGkY~~~~Day~-SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~e 378 (564)
|.+|+.|. +|. ++++.|+.+|+.+.+ ++..+.+.. . -...++|+|+++|||+++...
T Consensus 2 il~id~~d----sft~~~~~~l~~~g~~~~~------~~~~~~~~~----------~--~~~~~~~~iilsgGp~~~~~~ 59 (193)
T PRK08857 2 LLMIDNYD----SFTYNLYQYFCELGAQVKV------VRNDEIDID----------G--IEALNPTHLVISPGPCTPNEA 59 (193)
T ss_pred EEEEECCC----CcHHHHHHHHHHCCCcEEE------EECCCCCHH----------H--HhhCCCCEEEEeCCCCChHHC
Confidence 78887666 544 799999999988755 222211100 0 012358999999999997532
Q ss_pred H-HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeEee
Q 008476 379 G-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (564)
Q Consensus 379 g-~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l~ 457 (564)
+ ....++. .+.++|+||||+|||+|+.++|+++...+. +..|++ +++...
T Consensus 60 ~~~~~~i~~-~~~~~PiLGIClG~Qlia~a~Gg~v~~~~~-----------------------~~~G~~-----~~~~~~ 110 (193)
T PRK08857 60 GISLQAIEH-FAGKLPILGVCLGHQAIAQVFGGQVVRARQ-----------------------VMHGKT-----SPIRHT 110 (193)
T ss_pred cchHHHHHH-hcCCCCEEEEcHHHHHHHHHhCCEEEeCCC-----------------------ceeCce-----EEEEEC
Confidence 2 3455554 467899999999999999999998854221 112331 222222
Q ss_pred cCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeC--CCC--eEEEEEeCCCCcEEEEcccCCCcCCCC
Q 008476 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDE--TSQ--RMEIVELPNHPYFIGVQFHPEYKSRPG 533 (564)
Q Consensus 458 ~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~--dg~--~vE~ie~~~~pffiGvQFHPE~ss~p~ 533 (564)
.. +++..+. .. +...+.|++.+.+.. + +.+++++|+++ ++. .+++++++++|+ +|+|||||....+.
T Consensus 111 ~~-~l~~~~~-~~--~~v~~~H~~~v~~~~---l-p~~~~v~a~s~~~~~~~~~i~~~~~~~~pi-~gvQfHPE~~~t~~ 181 (193)
T PRK08857 111 GR-SVFKGLN-NP--LTVTRYHSLVVKNDT---L-PECFELTAWTELEDGSMDEIMGFQHKTLPI-EAVQFHPESIKTEQ 181 (193)
T ss_pred CC-cccccCC-Cc--cEEEEccEEEEEcCC---C-CCCeEEEEEecCcCCCcceEEEEEeCCCCE-EEEeeCCCcCCCcc
Confidence 21 3343332 12 345677888885332 3 57899999886 432 489999999985 59999999986654
Q ss_pred CchHHHHHHHHH
Q 008476 534 KPSPLFLGNISH 545 (564)
Q Consensus 534 ~p~pLF~~Fv~a 545 (564)
...+|++|++.
T Consensus 182 -g~~i~~nFl~~ 192 (193)
T PRK08857 182 -GHQLLANFLAR 192 (193)
T ss_pred -hHHHHHHHHhh
Confidence 78999999863
No 37
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.89 E-value=3.2e-22 Score=228.92 Aligned_cols=199 Identities=20% Similarity=0.286 Sum_probs=137.6
Q ss_pred CceEEEEEeccCCCcchHH-HHHHHHHHc-CCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCC
Q 008476 296 EPVRIAMVGKYTGLSDAYL-SILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 373 (564)
Q Consensus 296 ~~~~IavVGkY~~~~Day~-SIi~aL~~a-G~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG 373 (564)
..++|.+|+.|. +|. ++++.|+.. |..+.+ .++..+..+. +....+.++|||||+||||
T Consensus 4 ~~~~iL~ID~~D----Sft~nl~~~l~~~~g~~~~v----~vv~~d~~~~-----------~~~~~l~~~D~VVIspGPG 64 (742)
T TIGR01823 4 QRLHVLFIDSYD----SFTYNVVRLLEQQTDISVHV----TTVHSDTFQD-----------QLLELLPLFDAIVVGPGPG 64 (742)
T ss_pred CCceEEEEeCCc----chHHHHHHHHHHhcCCCcEE----EEEeCCCCch-----------hhhhhhcCCCEEEECCCCC
Confidence 457999996554 665 888888886 333322 2344433221 1123467899999999999
Q ss_pred CCchhHHHHHHHHHHHc----CCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceee
Q 008476 374 NRGVQGKILAAKYAREH----RIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRL 449 (564)
Q Consensus 374 ~r~~eg~i~~ir~a~e~----~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~Ggtmrl 449 (564)
++..+..+..++.+++. ++|+||||+|||+|+.++|+++...+ .++.|+
T Consensus 65 ~p~~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a~GG~v~~~~-----------------------~~~hG~---- 117 (742)
T TIGR01823 65 NPNNAQDMGIISELWELANLDEVPVLGICLGFQSLCLAQGADISRLP-----------------------TPKHGQ---- 117 (742)
T ss_pred CccchhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhhcCCEEEECC-----------------------CCCcCe----
Confidence 99766666677777765 49999999999999999999984322 122343
Q ss_pred cceeeEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCc
Q 008476 450 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYK 529 (564)
Q Consensus 450 G~~~v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~s 529 (564)
.+.+..... .++..+.. ....+.|+|.++++..+.+ .+.+++.+.++..+|+++++++|+| |||||||+.
T Consensus 118 -~~~v~~~~~-~lf~gl~~----~~v~~~Hs~~v~~~~~~~l---~~~~~a~~~~~~~i~ai~h~~~pi~-GVQFHPE~~ 187 (742)
T TIGR01823 118 -VYEMHTNDA-AIFCGLFS----VKSTRYHSLYANPEGIDTL---LPLCLTEDEEGIILMSAQTKKKPWF-GVQYHPESC 187 (742)
T ss_pred -EEEEEECCc-cccCCCCC----CceeEEEEEEccCCCCCcc---eEEEEEEcCCCCeEEEEEEcCCceE-EEEeCcccC
Confidence 123332222 34444431 2346779999876544322 2566777766667999999999965 999999998
Q ss_pred CCCCCchHHHHHHHHHHhccC
Q 008476 530 SRPGKPSPLFLGNISHLYFVC 550 (564)
Q Consensus 530 s~p~~p~pLF~~Fv~aa~~~~ 550 (564)
.++....+||++|++++.++.
T Consensus 188 ~s~~g~~~Lf~nFl~~~~~~~ 208 (742)
T TIGR01823 188 CSELGSGKLVSNFLKLAFINN 208 (742)
T ss_pred CCCccHHHHHHHHHHHHHHhh
Confidence 888767899999999987654
No 38
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.88 E-value=4.3e-22 Score=197.77 Aligned_cols=195 Identities=22% Similarity=0.337 Sum_probs=133.7
Q ss_pred eEEEEEeccCCCcchHHHHHHHHH-HcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCc
Q 008476 298 VRIAMVGKYTGLSDAYLSILKALL-HASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (564)
Q Consensus 298 ~~IavVGkY~~~~Day~SIi~aL~-~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~ 376 (564)
+||||+ .|... .+-.++.+||+ .+|+++.. .|... ..++++|+|+||||++...
T Consensus 1 ~~v~Vl-~~~G~-n~~~d~~~a~~~~~G~~~~~----v~~~~-------------------~~l~~~D~lvipGG~~~~d 55 (219)
T PRK03619 1 MKVAVI-VFPGS-NCDRDMARALRDLLGAEPEY----VWHKE-------------------TDLDGVDAVVLPGGFSYGD 55 (219)
T ss_pred CEEEEE-ecCCc-ChHHHHHHHHHhcCCCeEEE----EecCc-------------------CCCCCCCEEEECCCCchhh
Confidence 479999 67543 24568899999 88987532 23221 2367889999999975311
Q ss_pred ---------hhHHHHHHHHHHHcCCCEEEEehhHHHHHHH--hccccccccCCcccccCCCCCCCeeeecCCCcccccCC
Q 008476 377 ---------VQGKILAAKYAREHRIPYLGICLGMQVAVIE--FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGG 445 (564)
Q Consensus 377 ---------~eg~i~~ir~a~e~~iPiLGICLGmQll~ia--~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~Gg 445 (564)
....+..++.+.++++|++|||.|+|+|+.+ +.+.+. + ..+.+|
T Consensus 56 ~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l~--~-n~~~~~---------------------- 110 (219)
T PRK03619 56 YLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGALT--R-NASLKF---------------------- 110 (219)
T ss_pred hhccchhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeEE--E-cCCCcE----------------------
Confidence 1445677888888999999999999999754 222221 0 001111
Q ss_pred ceeecceeeEeecCCchhhhccC-Cce-eE-eeeeceeeeeChhhhhhhccCCeE---EEEEeCCCCeEEEEEeCC-CCc
Q 008476 446 TMRLGSRRTYFQIKDCKSAKLYG-NRT-FI-DERHRHRYEVNPDMIARLENAGLS---FTGKDETSQRMEIVELPN-HPY 518 (564)
Q Consensus 446 tmrlG~~~v~l~~~~s~~~~iyg-~~~-~I-~erh~HrYeVn~~~v~~l~~~gl~---~~a~s~dg~~vE~ie~~~-~pf 518 (564)
.-....+.+.+..+.+.+.++ +.. .+ ...|+|||++|++++++|++.++. +++.+++|...++.++.+ ++|
T Consensus 111 --~~~~v~v~i~~~~~~~~~~~~~g~~~~~~~aH~~~r~~~~~~~~~~l~~~~~~~~~~~~~npngs~~~ia~i~~~~~~ 188 (219)
T PRK03619 111 --ICRDVHLRVENNDTPFTSGYEKGEVIRIPIAHGEGNYYADEETLKRLEGNGQVVFRYCDENPNGSVNDIAGIVNEKGN 188 (219)
T ss_pred --EEEEEEEEECCCCChhhcCCCCCCEEEEEEEcCcccEEECHHHHHHHHhCCcEEEEEcCCCCCCCHHHhcccCCCCCC
Confidence 001222333332234444442 222 12 478899999999999999899987 444568998788888887 899
Q ss_pred EEEEcccCCCcCCC----CCchHHHHHHHH
Q 008476 519 FIGVQFHPEYKSRP----GKPSPLFLGNIS 544 (564)
Q Consensus 519 fiGvQFHPE~ss~p----~~p~pLF~~Fv~ 544 (564)
++|+|||||+.++| .++++||++|++
T Consensus 189 ~~g~~~HPE~~~~~~~~~~~g~~lf~~~v~ 218 (219)
T PRK03619 189 VLGMMPHPERAVEPLLGSTDGLKLFESLLK 218 (219)
T ss_pred EEEEeCCCCccccCccCCCcCHHHHHHHhh
Confidence 99999999999998 789999999986
No 39
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.88 E-value=1.5e-22 Score=200.76 Aligned_cols=171 Identities=27% Similarity=0.363 Sum_probs=109.2
Q ss_pred HHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCC--------C---c------
Q 008476 314 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN--------R---G------ 376 (564)
Q Consensus 314 ~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~--------r---~------ 376 (564)
.+++++++.+|+.+.. +.+..+. ..+.+.++.+||||+|||.-| . .
T Consensus 27 ~~Yv~~i~~aG~~pv~---ip~~~~~--------------~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~ 89 (217)
T PF07722_consen 27 ASYVKAIEAAGGRPVP---IPYDADD--------------EELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDP 89 (217)
T ss_dssp HHHHHHHHHTT-EEEE---E-SS--H--------------HHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHH
T ss_pred HHHHHHHHHcCCEEEE---EccCCCH--------------HHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCH
Confidence 3779999999998743 2222110 123466889999999999621 1 1
Q ss_pred --hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceee
Q 008476 377 --VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRT 454 (564)
Q Consensus 377 --~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v 454 (564)
..-.+.++++|+++++|+||||+|||+|++++|++... +.... . . . ..|.--......|++
T Consensus 90 ~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~~GGtl~q--~~~~~-~--~----~--------~~~~~~~~~~~~h~v 152 (217)
T PF07722_consen 90 ERDIFELALIRNALGRGKPILGICRGMQLLNVAFGGTLYQ--DIPDQ-P--G----F--------PDHRQHPQDFPSHPV 152 (217)
T ss_dssp HHHHHHHHHHHHHCCTT--EEEETHHHHHHHHHCCSSEES--CCCCS-S-------E--------EECEE-S-TS--EEE
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHHhCCCcee--ecccC-c--C----c--------ccccccccccccccc
Confidence 02256677888889999999999999999999998743 21110 0 0 0 001000012347888
Q ss_pred EeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCC-cEEEEcccCC
Q 008476 455 YFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHP-YFIGVQFHPE 527 (564)
Q Consensus 455 ~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~p-ffiGvQFHPE 527 (564)
.+.++ |.++++++ ...+.....|.++|.+ + ..+++++|++.||. +|+||.++++ |++|||||||
T Consensus 153 ~i~~~-s~l~~~~~-~~~~~vns~Hhq~v~~-----l-~~~l~v~A~s~Dg~-iEaie~~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 153 RIVPG-SLLAKILG-SEEIEVNSFHHQAVKP-----L-GEGLRVTARSPDGV-IEAIESPEHKYPILGVQWHPE 217 (217)
T ss_dssp EEETT-STCCCTSH-HCTEEEEEEECEEECC-----H-HCCEEEEEEECTSS-EEEEEECCESS-EEEESS-CC
T ss_pred eeccC-chHHHHhC-cCcceeecchhhhhhc-----c-CCCceEEEEecCCc-EEEEEEcCCCCCEEEEEeCCC
Confidence 88888 88999995 3334445556677765 3 67999999999887 9999999988 8899999999
No 40
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.88 E-value=1.9e-21 Score=191.81 Aligned_cols=200 Identities=18% Similarity=0.245 Sum_probs=121.8
Q ss_pred eEEEEEeccCCCcchH-HHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHh-ccCCCEEEeCCCCCCC
Q 008476 298 VRIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNR 375 (564)
Q Consensus 298 ~~IavVGkY~~~~Day-~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~-L~~~DGIllpGGfG~r 375 (564)
.+|++++.|. ++ .|++++|+..|+.+.+ ++.+ ... .+. ..++|||||+||||++
T Consensus 2 ~~il~iD~~d----sf~~nl~~~l~~~g~~~~v------~~~~-~~~-------------~~l~~~~~~~iIlsgGPg~~ 57 (208)
T PRK05637 2 THVVLIDNHD----SFVYNLVDAFAVAGYKCTV------FRNT-VPV-------------EEILAANPDLICLSPGPGHP 57 (208)
T ss_pred CEEEEEECCc----CHHHHHHHHHHHCCCcEEE------EeCC-CCH-------------HHHHhcCCCEEEEeCCCCCH
Confidence 3799994333 43 4899999999988765 2221 100 011 2478999999999998
Q ss_pred chhH-HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCce-eeccee
Q 008476 376 GVQG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTM-RLGSRR 453 (564)
Q Consensus 376 ~~eg-~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~Ggtm-rlG~~~ 453 (564)
...+ ....++.+. .++|+||||+|||+|+.++|+++.... .+.... .+ +.. .+.|.+. -++..+
T Consensus 58 ~d~~~~~~li~~~~-~~~PiLGIClG~Qlla~alGG~V~~~~----~~~G~~--~~-i~~------~~~~~~~~l~~~~~ 123 (208)
T PRK05637 58 RDAGNMMALIDRTL-GQIPLLGICLGFQALLEHHGGKVEPCG----PVHGTT--DN-MIL------TDAGVQSPVFAGLA 123 (208)
T ss_pred HHhhHHHHHHHHHh-CCCCEEEEcHHHHHHHHHcCCeeccCC----cccceE--EE-eEE------CCCCCCCcccCCCC
Confidence 5433 345555443 479999999999999999999985311 110000 00 000 0111100 011112
Q ss_pred eEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCC--CCeEEEEEeCCCCcEEEEcccCCCcCC
Q 008476 454 TYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET--SQRMEIVELPNHPYFIGVQFHPEYKSR 531 (564)
Q Consensus 454 v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~d--g~~vE~ie~~~~pffiGvQFHPE~ss~ 531 (564)
+...++ ...+.+.+..++.+ |+++| ..+ +.+++++|.+.+ +..++++++++.| ++|+|||||...+
T Consensus 124 ~~~~~~---~~~~~g~~~~V~~~--H~~~v-----~~l-p~~~~vlA~s~~~~~~v~~a~~~~~~~-~~GvQfHPE~~~T 191 (208)
T PRK05637 124 TDVEPD---HPEIPGRKVPIARY--HSLGC-----VVA-PDGMESLGTCSSEIGPVIMAAETTDGK-AIGLQFHPESVLS 191 (208)
T ss_pred cccccc---cccccCCceEEEEe--chhhh-----hcC-CCCeEEEEEecCCCCCEEEEEEECCCC-EEEEEeCCccCcC
Confidence 111111 11222223334444 44443 344 678999998755 3457889999888 6699999999988
Q ss_pred CCCchHHHHHHHHHHhc
Q 008476 532 PGKPSPLFLGNISHLYF 548 (564)
Q Consensus 532 p~~p~pLF~~Fv~aa~~ 548 (564)
+. ...+|++|++....
T Consensus 192 ~~-G~~il~nfl~~~~~ 207 (208)
T PRK05637 192 PT-GPIILSRCVEQLLA 207 (208)
T ss_pred CC-HHHHHHHHHHHHhc
Confidence 84 68999999988754
No 41
>PRK13566 anthranilate synthase; Provisional
Probab=99.88 E-value=9.9e-22 Score=223.72 Aligned_cols=194 Identities=17% Similarity=0.166 Sum_probs=138.8
Q ss_pred CCceEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCC
Q 008476 295 HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 374 (564)
Q Consensus 295 ~~~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~ 374 (564)
+...+|.+| ||++. .-.++.++|+..|+++.+ +....- .+ . -...++|||||+||+|.
T Consensus 524 ~~g~~IlvI-D~~ds--f~~~l~~~Lr~~G~~v~v------v~~~~~-~~-----------~-~~~~~~DgVVLsgGpgs 581 (720)
T PRK13566 524 GEGKRVLLV-DHEDS--FVHTLANYFRQTGAEVTT------VRYGFA-EE-----------M-LDRVNPDLVVLSPGPGR 581 (720)
T ss_pred CCCCEEEEE-ECCCc--hHHHHHHHHHHCCCEEEE------EECCCC-hh-----------H-hhhcCCCEEEECCCCCC
Confidence 356799999 66632 244899999999998755 222110 00 0 12357899999999999
Q ss_pred CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceee
Q 008476 375 RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRT 454 (564)
Q Consensus 375 r~~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v 454 (564)
+...+....++.+.++++|+||||+|||+|+.++|+++..++ .++.|+ .+++
T Consensus 582 p~d~~~~~lI~~a~~~~iPILGIClG~QlLa~alGG~V~~~~-----------------------~~~~G~-----~~~V 633 (720)
T PRK13566 582 PSDFDCKATIDAALARNLPIFGVCLGLQAIVEAFGGELGQLA-----------------------YPMHGK-----PSRI 633 (720)
T ss_pred hhhCCcHHHHHHHHHCCCcEEEEehhHHHHHHHcCCEEEECC-----------------------CCccCC-----ceEE
Confidence 876667889999999999999999999999999999985432 123343 3455
Q ss_pred EeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCC--C
Q 008476 455 YFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSR--P 532 (564)
Q Consensus 455 ~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~--p 532 (564)
.+.+++.++..+. . .+...+.|+|.+....+ +.+++++|.++++. ++++++++.| ++|||||||+.-. .
T Consensus 634 ~v~~~~~Lf~~lp-~--~~~v~~~Hs~~v~~~~L----p~~~~vlA~s~dg~-V~ai~~~~~p-i~GVQFHPE~i~t~~~ 704 (720)
T PRK13566 634 RVRGPGRLFSGLP-E--EFTVGRYHSLFADPETL----PDELLVTAETEDGV-IMAIEHKTLP-VAAVQFHPESIMTLGG 704 (720)
T ss_pred EECCCCchhhcCC-C--CCEEEEecceeEeeccC----CCceEEEEEeCCCc-EEEEEECCCC-EEEEeccCeeCCcCCc
Confidence 5555433444332 2 23466778877654333 56899999998875 9999999999 5699999999643 2
Q ss_pred CCchHHHHHHHHHHh
Q 008476 533 GKPSPLFLGNISHLY 547 (564)
Q Consensus 533 ~~p~pLF~~Fv~aa~ 547 (564)
.....||++|++.+.
T Consensus 705 ~~G~~ii~nfl~~~~ 719 (720)
T PRK13566 705 DVGLRIIENVVRLLA 719 (720)
T ss_pred hhHHHHHHHHHHHhh
Confidence 235899999998874
No 42
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.88 E-value=1.1e-21 Score=222.95 Aligned_cols=194 Identities=21% Similarity=0.207 Sum_probs=138.2
Q ss_pred CceEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 008476 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (564)
Q Consensus 296 ~~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r 375 (564)
...+|+|| ||++. .-.++.++|+..|+++.+ +.....++ . -...++|||||+||||++
T Consensus 515 ~~~~IlVI-D~gds--~~~~l~~~L~~~G~~v~v------v~~~~~~~------------~-~~~~~~DgLILsgGPGsp 572 (717)
T TIGR01815 515 EGRRILLV-DHEDS--FVHTLANYLRQTGASVTT------LRHSHAEA------------A-FDERRPDLVVLSPGPGRP 572 (717)
T ss_pred CCCEEEEE-ECCCh--hHHHHHHHHHHCCCeEEE------EECCCChh------------h-hhhcCCCEEEEcCCCCCc
Confidence 45799999 67632 235999999999988754 22111100 0 123579999999999998
Q ss_pred chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeE
Q 008476 376 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 455 (564)
Q Consensus 376 ~~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~ 455 (564)
...+....++.+.+.++|+||||||||+|+.++|+++..++ .+++|+ ..++.
T Consensus 573 ~d~~~~~~I~~~~~~~iPvLGICLG~QlLa~a~GG~V~~~~-----------------------~p~~G~-----~~~V~ 624 (717)
T TIGR01815 573 ADFDVAGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVLP-----------------------EPVHGK-----ASRIR 624 (717)
T ss_pred hhcccHHHHHHHHHCCCCEEEECHHHHHHhhhhCCEEEECC-----------------------CCeeCc-----ceEEE
Confidence 76666788898889999999999999999999999885432 245565 23333
Q ss_pred eecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCC--
Q 008476 456 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPG-- 533 (564)
Q Consensus 456 l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~-- 533 (564)
+...++++..+. .. ...++.|+|.+.... + +.++.++|.++++. +++++++++| ++|+|||||....+.
T Consensus 625 ~~~~~~Lf~~lp-~~--~~v~~~HS~~~~~~~---L-P~~~~vlA~s~d~~-v~Ai~~~~~~-i~GVQFHPEsi~T~sg~ 695 (717)
T TIGR01815 625 VLGPDALFAGLP-ER--LTVGRYHSLFARRDR---L-PAELTVTAESADGL-IMAIEHRRLP-LAAVQFHPESIMTLDGG 695 (717)
T ss_pred ECCCChhhhcCC-CC--CEEEEECCCCccccc---C-CCCeEEEEEeCCCc-EEEEEECCCC-EEEEEeCCeeCCccCch
Confidence 333324444442 22 346778888765433 2 56899999998876 9999999999 569999999954432
Q ss_pred CchHHHHHHHHHHhc
Q 008476 534 KPSPLFLGNISHLYF 548 (564)
Q Consensus 534 ~p~pLF~~Fv~aa~~ 548 (564)
....||++|+..+..
T Consensus 696 ~G~~ilkNfl~~~~~ 710 (717)
T TIGR01815 696 AGLAMIGNVVDRLAA 710 (717)
T ss_pred hHHHHHHHHHHHHhh
Confidence 357999999988754
No 43
>PLN02347 GMP synthetase
Probab=99.87 E-value=2.9e-21 Score=213.77 Aligned_cols=184 Identities=18% Similarity=0.212 Sum_probs=127.3
Q ss_pred EEEEEeccCCCcchH-HHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhc--cCCCEEEeCCCCCCC
Q 008476 299 RIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGNR 375 (564)
Q Consensus 299 ~IavVGkY~~~~Day-~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L--~~~DGIllpGGfG~r 375 (564)
+|+|+ ||+. .| .++.++|+..|+.+.+ ++.+ .. + +.+ .++||||+||||++.
T Consensus 12 ~IlII-D~G~---~~t~~I~r~lrelgv~~~v------~p~~-~~-------~-------~~i~~~~~dgIILsGGP~sv 66 (536)
T PLN02347 12 VVLIL-DYGS---QYTHLITRRVRELGVYSLL------LSGT-AS-------L-------DRIASLNPRVVILSGGPHSV 66 (536)
T ss_pred EEEEE-ECCC---cHHHHHHHHHHHCCCeEEE------EECC-CC-------H-------HHHhcCCCCEEEECCCCCcc
Confidence 79999 7873 34 4899999999987654 2211 10 0 222 278999999999865
Q ss_pred chh----HHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecc
Q 008476 376 GVQ----GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGS 451 (564)
Q Consensus 376 ~~e----g~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~ 451 (564)
... -....++.+.+.++|+||||+|||+|+.++|++|..... ..+| .
T Consensus 67 ~~~~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~alGG~V~~~~~-----------------------~e~G------~ 117 (536)
T PLN02347 67 HVEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQKLGGEVKPGEK-----------------------QEYG------R 117 (536)
T ss_pred cccCCchhhHHHHHHHHhcCCcEEEECHHHHHHHHHcCCEEEecCC-----------------------cccc------e
Confidence 321 112345666678999999999999999999998843210 1123 3
Q ss_pred eeeEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCC
Q 008476 452 RRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSR 531 (564)
Q Consensus 452 ~~v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~ 531 (564)
.++.+..++.++..+. .......++.|++.+.. + +.++.++|.+.++. ++++++++.|+ +|+|||||++..
T Consensus 118 ~~v~i~~~~~Lf~~l~-~~~~~~v~~~Hsd~V~~-----l-P~g~~vlA~s~~~~-iaai~~~~~~i-~GvQFHPE~~~t 188 (536)
T PLN02347 118 MEIRVVCGSQLFGDLP-SGETQTVWMSHGDEAVK-----L-PEGFEVVAKSVQGA-VVAIENRERRI-YGLQYHPEVTHS 188 (536)
T ss_pred EEEEEcCCChhhhcCC-CCceEEEEEEEEEEeee-----C-CCCCEEEEEeCCCc-EEEEEECCCCE-EEEEccCCCCcc
Confidence 4455444433444443 22123467789887742 3 57899999998886 89999999995 699999999987
Q ss_pred CCCchHHHHHHHHHH
Q 008476 532 PGKPSPLFLGNISHL 546 (564)
Q Consensus 532 p~~p~pLF~~Fv~aa 546 (564)
+. ...++++|+..+
T Consensus 189 ~~-G~~iL~NFl~~i 202 (536)
T PLN02347 189 PK-GMETLRHFLFDV 202 (536)
T ss_pred ch-HHHHHHHHHHHH
Confidence 64 578999998544
No 44
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.87 E-value=3.6e-21 Score=187.95 Aligned_cols=187 Identities=18% Similarity=0.189 Sum_probs=118.4
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCch
Q 008476 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (564)
Q Consensus 298 ~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~ 377 (564)
++|+|| ||+.. ++.|+.++|++.|+++.+ +... +.+.++|+||+|| +|.+..
T Consensus 1 m~i~ii-d~g~g--n~~s~~~~l~~~g~~~~~------v~~~------------------~~~~~~d~iIlPG-~G~~~~ 52 (196)
T PRK13170 1 MNVVII-DTGCA--NLSSVKFAIERLGYEPVV------SRDP------------------DVILAADKLFLPG-VGTAQA 52 (196)
T ss_pred CeEEEE-eCCCc--hHHHHHHHHHHCCCeEEE------ECCH------------------HHhCCCCEEEECC-CCchHH
Confidence 579999 89855 788999999999987654 3221 3567899999977 454322
Q ss_pred --hHH--HHHHHHHHHcCCCEEEEehhHHHHHHHhcc----ccccccCCcccccCCCCCCCeeeecCCCcccccCCceee
Q 008476 378 --QGK--ILAAKYAREHRIPYLGICLGMQVAVIEFAR----SVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRL 449 (564)
Q Consensus 378 --eg~--i~~ir~a~e~~iPiLGICLGmQll~ia~g~----~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~Ggtmrl 449 (564)
... ...++.+++.++|+||||+|||+|+.+++. +.+++-+.....++. +....+|+||+
T Consensus 53 ~~~~l~~~~l~~~i~~~~~PilGIClG~Qll~~~~~~~~~~~~lg~~~g~v~~~~~----------~~~~~p~~G~~--- 119 (196)
T PRK13170 53 AMDQLRERELIDLIKACTQPVLGICLGMQLLGERSEESGGVDCLGIIDGPVKKMTD----------FGLPLPHMGWN--- 119 (196)
T ss_pred HHHHHHHcChHHHHHHcCCCEEEECHHHHHHhhhcccCCCCCCcccccEEEEECCC----------CCCCCCccccc---
Confidence 111 224555566789999999999999988743 222332222222210 01235788873
Q ss_pred cceeeEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCc
Q 008476 450 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYK 529 (564)
Q Consensus 450 G~~~v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~s 529 (564)
++.+.+++.++..+- . ....+|.|+|++.++ ...++.+.++..+.++ +.+.+ ++|+|||||++
T Consensus 120 ---~v~~~~~~~l~~~l~-~--~~~v~~~Hs~~lp~~---------~~~la~s~~~~~~~~~-~~~~~-i~G~QFHPE~~ 182 (196)
T PRK13170 120 ---QVTPQAGHPLFQGIE-D--GSYFYFVHSYAMPVN---------EYTIAQCNYGEPFSAA-IQKDN-FFGVQFHPERS 182 (196)
T ss_pred ---eeEeCCCChhhhCCC-c--CCEEEEECeeecCCC---------CcEEEEecCCCeEEEE-EEcCC-EEEEECCCCCc
Confidence 344444434444443 2 234678899987432 2355777666533333 34444 77999999998
Q ss_pred CCCCCchHHHHHHHH
Q 008476 530 SRPGKPSPLFLGNIS 544 (564)
Q Consensus 530 s~p~~p~pLF~~Fv~ 544 (564)
.. ....++++|++
T Consensus 183 ~~--~G~~~l~nfl~ 195 (196)
T PRK13170 183 GA--AGAQLLKNFLE 195 (196)
T ss_pred cc--ccHHHHHHHhh
Confidence 53 46899999975
No 45
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.85 E-value=9.4e-21 Score=183.93 Aligned_cols=149 Identities=23% Similarity=0.347 Sum_probs=109.3
Q ss_pred HHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCc---------------h-
Q 008476 314 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG---------------V- 377 (564)
Q Consensus 314 ~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~---------------~- 377 (564)
.+++++|+.+|+.+.+ +.+... . ....+.+.++||||+|||++... .
T Consensus 22 ~~~~~~l~~~G~~~~i---v~~~~~--~------------~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~ 84 (189)
T cd01745 22 QYYVDAVRKAGGLPVL---LPPVDD--E------------EDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPE 84 (189)
T ss_pred HHHHHHHHHCCCEEEE---eCCCCC--h------------HHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChh
Confidence 3899999999987644 111111 1 01224567899999999975311 0
Q ss_pred --hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeE
Q 008476 378 --QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 455 (564)
Q Consensus 378 --eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~ 455 (564)
.....+++++.+.++|+||||+|||+|+.++|+++.+
T Consensus 85 r~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~~Gg~v~~----------------------------------------- 123 (189)
T cd01745 85 RDAFELALLRAALERGKPILGICRGMQLLNVALGGTLYQ----------------------------------------- 123 (189)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcchHHHHHHHhCCeEEc-----------------------------------------
Confidence 2347788889899999999999999999999887621
Q ss_pred eecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCC-CCC
Q 008476 456 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSR-PGK 534 (564)
Q Consensus 456 l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~-p~~ 534 (564)
. . .+ .+.|+++| ..+ +.+++++|.++++. +|++++++|++++|+|||||.... |.+
T Consensus 124 ---~-~----------~v--~~~H~~~v-----~~~-~~~~~vla~~~d~~-vea~~~~~~~~~~gvQfHPE~~~~~~~~ 180 (189)
T cd01745 124 ---D-I----------RV--NSLHHQAI-----KRL-ADGLRVEARAPDGV-IEAIESPDRPFVLGVQWHPEWLADTDPD 180 (189)
T ss_pred ---C-C----------ce--echHHHHH-----hhc-CCCCEEEEECCCCc-EEEEEeCCCCeEEEEecCCCcCcccCch
Confidence 0 0 11 23355544 344 67899999987775 999999997678899999999988 777
Q ss_pred chHHHHHHH
Q 008476 535 PSPLFLGNI 543 (564)
Q Consensus 535 p~pLF~~Fv 543 (564)
...+|++|+
T Consensus 181 ~~~if~~f~ 189 (189)
T cd01745 181 SLKLFEAFV 189 (189)
T ss_pred HhHHHHHhC
Confidence 899999985
No 46
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.85 E-value=1.2e-20 Score=186.26 Aligned_cols=198 Identities=19% Similarity=0.211 Sum_probs=120.5
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-
Q 008476 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 376 (564)
Q Consensus 298 ~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~- 376 (564)
++|+|+ ||+.. +..|+.++|+.+|+++.+ ++.+ +.+.++|+||+|| +|++.
T Consensus 2 ~~v~ii-d~~~G--N~~sl~~al~~~g~~v~v------v~~~------------------~~l~~~d~iIlPG-~g~~~~ 53 (210)
T CHL00188 2 MKIGII-DYSMG--NLHSVSRAIQQAGQQPCI------INSE------------------SELAQVHALVLPG-VGSFDL 53 (210)
T ss_pred cEEEEE-EcCCc--cHHHHHHHHHHcCCcEEE------EcCH------------------HHhhhCCEEEECC-CCchHH
Confidence 479999 89844 789999999999988754 2211 3456799999887 45532
Q ss_pred -h-----hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcc---ccccccCCcccccCCCCCCCeeeecCCCcccccCCce
Q 008476 377 -V-----QGKILAAKYAREHRIPYLGICLGMQVAVIEFAR---SVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTM 447 (564)
Q Consensus 377 -~-----eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~---~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~Ggtm 447 (564)
. .+....++.+.++++|+||||+|||+|+..++. +.+++-+...+++... +..+++|+||+.
T Consensus 54 ~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v~~~~~~---------~~~~~p~~Gw~~ 124 (210)
T CHL00188 54 AMKKLEKKGLITPIKKWIAEGNPFIGICLGLHLLFETSEEGKEEGLGIYKGQVKRLKHS---------PVKVIPHMGWNR 124 (210)
T ss_pred HHHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHHhhccccCCcCCccceeEEEEECCCC---------CCCccCccCCcc
Confidence 1 245567888888899999999999999766543 2222222222222100 122579999953
Q ss_pred -eecceeeEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccC
Q 008476 448 -RLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHP 526 (564)
Q Consensus 448 -rlG~~~v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHP 526 (564)
++...... .+.++++..+- . ....++.|+|.+.|.. ...+..++...+...+.+++.. + ++|+||||
T Consensus 125 v~~~~~~~~-~~~~~lf~~l~-~--~~~v~~~HS~~v~p~~-----~~~l~~t~~~~~~~~v~a~~~~--~-i~GvQFHP 192 (210)
T CHL00188 125 LECQNSECQ-NSEWVNWKAWP-L--NPWAYFVHSYGVMPKS-----QACATTTTFYGKQQMVAAIEYD--N-IFAMQFHP 192 (210)
T ss_pred ceecCCccc-ccCChhhcCCC-C--CCEEEEeCccEecCCC-----CceEEEEEecCCcceEEEEecC--C-EEEEecCC
Confidence 22111000 00013444443 2 2345678999886432 1123333333222348888852 4 67999999
Q ss_pred CCcCCCCCchHHHHHHHHHH
Q 008476 527 EYKSRPGKPSPLFLGNISHL 546 (564)
Q Consensus 527 E~ss~p~~p~pLF~~Fv~aa 546 (564)
|+++. ....++++|++.+
T Consensus 193 E~s~~--~G~~il~nfl~~~ 210 (210)
T CHL00188 193 EKSGE--FGLWLLREFMKKA 210 (210)
T ss_pred ccccH--hHHHHHHHHHhhC
Confidence 99843 3578999998653
No 47
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.85 E-value=2.6e-20 Score=183.78 Aligned_cols=196 Identities=21% Similarity=0.229 Sum_probs=119.4
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-
Q 008476 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 376 (564)
Q Consensus 298 ~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~- 376 (564)
+||+|| ||+.. +..|+.++|++.|+++ ++.|+... +.++++|||||||+.....
T Consensus 2 ~~~~ii-d~g~g--n~~s~~~al~~~g~~~----~v~~~~~~------------------~~l~~~d~lIlpG~~~~~~~ 56 (209)
T PRK13146 2 MTVAII-DYGSG--NLRSAAKALERAGAGA----DVVVTADP------------------DAVAAADRVVLPGVGAFADC 56 (209)
T ss_pred CeEEEE-ECCCC--hHHHHHHHHHHcCCCc----cEEEECCH------------------HHhcCCCEEEECCCCcHHHH
Confidence 589999 89854 6789999999999964 33455431 4578999999999632211
Q ss_pred ---h--hHHHHH-HHHHHHcCCCEEEEehhHHHHHHH---hc-cccccccCCcccccCCCCCCCeeeecCCCcccccCCc
Q 008476 377 ---V--QGKILA-AKYAREHRIPYLGICLGMQVAVIE---FA-RSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 446 (564)
Q Consensus 377 ---~--eg~i~~-ir~a~e~~iPiLGICLGmQll~ia---~g-~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~Ggt 446 (564)
. .+.... ++.+.++++|+||||+|||+|+.+ .+ .+.+++-+....++++.. +....+|+||+
T Consensus 57 ~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~~~~~--------~~~~~p~~G~~ 128 (209)
T PRK13146 57 MRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRFQPDG--------PALKVPHMGWN 128 (209)
T ss_pred HHHHHHCCcHHHHHHHHHhCCCcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEcCCCC--------CCCccCccChH
Confidence 1 122333 444556899999999999999865 11 011111111111110000 00134677773
Q ss_pred eeecceeeEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccC
Q 008476 447 MRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHP 526 (564)
Q Consensus 447 mrlG~~~v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHP 526 (564)
++.+.+++.++..+. .. ...++.|+|.+.+. + +..+++.+.++..+.++... .| ++|+||||
T Consensus 129 ------~v~~~~~~~lf~~~~-~~--~~v~~~Hs~~v~~~------~-~~~~la~s~~~~~~~a~~~~-~~-i~GvQFHP 190 (209)
T PRK13146 129 ------TVDQTRDHPLFAGIP-DG--ARFYFVHSYYAQPA------N-PADVVAWTDYGGPFTAAVAR-DN-LFATQFHP 190 (209)
T ss_pred ------HeeeCCCChhccCCC-CC--CEEEEEeEEEEEcC------C-CCcEEEEEcCCCEEEEEEec-CC-EEEEEcCC
Confidence 344434434444443 22 34678899988532 1 34677777766556666543 44 77999999
Q ss_pred CCcCCCCCchHHHHHHHHHH
Q 008476 527 EYKSRPGKPSPLFLGNISHL 546 (564)
Q Consensus 527 E~ss~p~~p~pLF~~Fv~aa 546 (564)
|+++. ....|+++|++.+
T Consensus 191 E~s~~--~G~~ll~nfl~~~ 208 (209)
T PRK13146 191 EKSQD--AGLALLRNFLAWL 208 (209)
T ss_pred cccHH--HHHHHHHHHHhhc
Confidence 99743 4678999998763
No 48
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.85 E-value=1.5e-20 Score=208.81 Aligned_cols=186 Identities=17% Similarity=0.241 Sum_probs=125.9
Q ss_pred EEEEeccCCCcchHH-HHHHHHHHcCCc-ceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCch
Q 008476 300 IAMVGKYTGLSDAYL-SILKALLHASVD-LRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (564)
Q Consensus 300 IavVGkY~~~~Day~-SIi~aL~~aG~~-v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~ 377 (564)
|.+|+.|. +|. ++++.|++.|.. +.+ +.+.+.+. ++ + ...++||||++||||++..
T Consensus 2 il~idn~d----sft~nl~~~l~~~g~~~v~~------~~~~~~~~-------~~---~--~~~~~d~vIlsgGP~~p~~ 59 (534)
T PRK14607 2 IILIDNYD----SFTYNIYQYIGELGPEEIEV------VRNDEITI-------EE---I--EALNPSHIVISPGPGRPEE 59 (534)
T ss_pred EEEEECch----hHHHHHHHHHHHcCCCeEEE------ECCCCCCH-------HH---H--HhcCCCEEEECCCCCChhh
Confidence 78887665 555 899999999975 322 22222210 00 1 1236899999999999743
Q ss_pred -hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeEe
Q 008476 378 -QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 456 (564)
Q Consensus 378 -eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l 456 (564)
...+..++. .+.++|+||||+|||+|+.++|+++..... ++.|+ .+++..
T Consensus 60 ~~~~~~li~~-~~~~~PvLGIClG~QlLa~a~Gg~V~~~~~-----------------------~~~G~-----~~~v~~ 110 (534)
T PRK14607 60 AGISVEVIRH-FSGKVPILGVCLGHQAIGYAFGGKIVHAKR-----------------------ILHGK-----TSPIDH 110 (534)
T ss_pred CCccHHHHHH-hhcCCCEEEEcHHHHHHHHHcCCeEecCCc-----------------------cccCC-----ceeEEE
Confidence 223455665 367899999999999999999998854321 12233 223332
Q ss_pred ecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCch
Q 008476 457 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 536 (564)
Q Consensus 457 ~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~ 536 (564)
... +++..+. . .+...++|+|.++... + +.+++++|.++++. +++++++++| ++|+|||||.... .+..
T Consensus 111 ~~~-~lf~~~~-~--~~~v~~~Hs~~v~~~~---l-p~~~~vlA~s~d~~-i~a~~~~~~p-i~GvQFHPE~~~t-~~g~ 179 (534)
T PRK14607 111 NGK-GLFRGIP-N--PTVATRYHSLVVEEAS---L-PECLEVTAKSDDGE-IMGIRHKEHP-IFGVQFHPESILT-EEGK 179 (534)
T ss_pred CCC-cchhcCC-C--CcEEeeccchheeccc---C-CCCeEEEEEcCCCC-EEEEEECCCC-EEEEEeCCCCCCC-hhHH
Confidence 222 3333332 1 2345678888875432 2 57899999998886 9999999999 5699999997654 4567
Q ss_pred HHHHHHHHHHh
Q 008476 537 PLFLGNISHLY 547 (564)
Q Consensus 537 pLF~~Fv~aa~ 547 (564)
.+|++|++.+.
T Consensus 180 ~i~~nFl~~~~ 190 (534)
T PRK14607 180 RILKNFLNYQR 190 (534)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 49
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.84 E-value=4.6e-20 Score=203.91 Aligned_cols=183 Identities=20% Similarity=0.239 Sum_probs=124.8
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhcc--CCCEEEeCCCCCCC
Q 008476 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK--GADGILVPGGFGNR 375 (564)
Q Consensus 298 ~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~--~~DGIllpGGfG~r 375 (564)
-+|+|+ ||+.. .-.++.++|+.+|+...+ .+.+.. . +.++ ++||||+|||+.+.
T Consensus 4 ~~i~vl-D~Gsq--~~~li~r~lrelg~~~~v----~p~~~~-~----------------~~l~~~~~dgIIlsGGp~sv 59 (511)
T PRK00074 4 DKILIL-DFGSQ--YTQLIARRVRELGVYSEI----VPYDIS-A----------------EEIRAFNPKGIILSGGPASV 59 (511)
T ss_pred CEEEEE-ECCCC--cHHHHHHHHHHCCCeEEE----EECCCC-H----------------HHHhccCCCEEEECCCCccc
Confidence 369999 88743 233799999999987654 122211 1 2232 56999999998764
Q ss_pred chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeE
Q 008476 376 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 455 (564)
Q Consensus 376 ~~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~ 455 (564)
..++.....+.+.+.++|+||||+|||+|+.++|+++.... . .+ +|.+++.
T Consensus 60 ~~~~~p~~~~~i~~~~~PvLGIC~G~QlLa~~lGG~V~~~~---~--------------------~e------~G~~~i~ 110 (511)
T PRK00074 60 YEEGAPRADPEIFELGVPVLGICYGMQLMAHQLGGKVERAG---K--------------------RE------YGRAELE 110 (511)
T ss_pred ccCCCccccHHHHhCCCCEEEECHHHHHHHHHhCCeEEecC---C--------------------cc------cceEEEE
Confidence 32222333456677899999999999999999999884311 0 12 2344555
Q ss_pred eecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCc
Q 008476 456 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKP 535 (564)
Q Consensus 456 l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~p 535 (564)
+.+++.++..+- .. ...++.|++.|. .+ +.+++++|.++++. ++++++.+.| ++|+|||||++..+. .
T Consensus 111 i~~~~~Lf~~l~-~~--~~v~~~H~d~V~-----~l-p~g~~vlA~s~~~~-v~ai~~~~~~-i~GvQFHPE~~~t~~-G 178 (511)
T PRK00074 111 VDNDSPLFKGLP-EE--QDVWMSHGDKVT-----EL-PEGFKVIASTENCP-IAAIANEERK-FYGVQFHPEVTHTPQ-G 178 (511)
T ss_pred EcCCChhhhcCC-Cc--eEEEEECCeEEE-----ec-CCCcEEEEEeCCCC-EEEEEeCCCC-EEEEeCCCCcCCchh-H
Confidence 544423443332 22 335567877763 33 67899999998765 9999999888 569999999998764 6
Q ss_pred hHHHHHHHHH
Q 008476 536 SPLFLGNISH 545 (564)
Q Consensus 536 ~pLF~~Fv~a 545 (564)
..+|++|+..
T Consensus 179 ~~il~nFl~~ 188 (511)
T PRK00074 179 KKLLENFVFD 188 (511)
T ss_pred HHHHHHHHHH
Confidence 7999999843
No 50
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.83 E-value=1e-19 Score=179.69 Aligned_cols=188 Identities=20% Similarity=0.241 Sum_probs=120.8
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCch--
Q 008476 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 377 (564)
Q Consensus 300 IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~-- 377 (564)
|+|+ ||+.. +-.|+.++|+..+.++. |+... +.++++|+||+||+ |++..
T Consensus 2 i~ii-dyg~g--Nl~s~~~al~~~~~~~~------~~~~~------------------~~l~~~d~iIlPG~-g~~~~~~ 53 (210)
T PRK14004 2 IAIL-DYGMG--NIHSCLKAVSLYTKDFV------FTSDP------------------ETIENSKALILPGD-GHFDKAM 53 (210)
T ss_pred EEEE-ECCCc--hHHHHHHHHHHcCCeEE------EECCH------------------HHhccCCEEEECCC-CchHHHH
Confidence 8899 99966 78899999999997653 23221 45679999999996 44321
Q ss_pred -----hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcc----------ccccccCCcccccCCCCCCCeeeecCCCcccc
Q 008476 378 -----QGKILAAKYAREHRIPYLGICLGMQVAVIEFAR----------SVLNLRDANSTEFDPNTKNPCVIFMPEGSKTH 442 (564)
Q Consensus 378 -----eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~----------~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~ 442 (564)
.+....++.+.+.++|+||||+|||+|+.+++- +-||+-++...++.. ...+.+|
T Consensus 54 ~~l~~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~~~~----------~~~~~ph 123 (210)
T PRK14004 54 ENLNSTGLRSTIDKHVESGKPLFGICIGFQILFESSEETNQGTKKEQIEGLGYIKGKIKKFEG----------KDFKVPH 123 (210)
T ss_pred HHHHHcCcHHHHHHHHHcCCCEEEECHhHHHHHHhcccccCCCcCcccCCcceeEEEEEEcCC----------CCCcCCc
Confidence 256777777778899999999999999877652 223333333233310 0124789
Q ss_pred cCCceeecceeeEee--cCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCC-CCeEEEEEeCCCCcE
Q 008476 443 MGGTMRLGSRRTYFQ--IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET-SQRMEIVELPNHPYF 519 (564)
Q Consensus 443 ~GgtmrlG~~~v~l~--~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~d-g~~vE~ie~~~~pff 519 (564)
+||+. +.+. .+++++..+-. ....+|.|+|.+++. ..+..++.+++ +..+.++. .+.+ +
T Consensus 124 ~Gw~~------v~~~~~~~~~lf~~l~~---~~~v~~~HS~~~~~~-------~~l~~sa~~~~~g~~~~a~~-~~~~-i 185 (210)
T PRK14004 124 IGWNR------LQIRRKDKSKLLKGIGD---QSFFYFIHSYRPTGA-------EGNAITGLCDYYQEKFPAVV-EKEN-I 185 (210)
T ss_pred cCccc------ceeccCCCCccccCCCC---CCEEEEeceeecCCC-------CcceEEEeeeECCEEEEEEE-ecCC-E
Confidence 99952 2221 12234444431 234678899865321 22445565555 44344444 4555 6
Q ss_pred EEEcccCCCcCCCCCchHHHHHHHHH
Q 008476 520 IGVQFHPEYKSRPGKPSPLFLGNISH 545 (564)
Q Consensus 520 iGvQFHPE~ss~p~~p~pLF~~Fv~a 545 (564)
+|+|||||++. + ....++++|++.
T Consensus 186 ~GvQFHPE~s~-~-~G~~iL~nfl~~ 209 (210)
T PRK14004 186 FGTQFHPEKSH-T-HGLKLLENFIEF 209 (210)
T ss_pred EEEeCCcccCc-h-hHHHHHHHHHhh
Confidence 79999999988 4 568999999874
No 51
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.83 E-value=2.5e-20 Score=181.35 Aligned_cols=174 Identities=22% Similarity=0.284 Sum_probs=109.8
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCc--h
Q 008476 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG--V 377 (564)
Q Consensus 300 IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~--~ 377 (564)
|+|+ ||+.. +..|+.++|++.|+++.+ +... +.+.++|+||+||+ |+.. .
T Consensus 2 i~ii-dyg~g--N~~s~~~al~~~g~~~~~------v~~~------------------~~l~~~D~lIlPG~-g~~~~~~ 53 (192)
T PRK13142 2 IVIV-DYGLG--NISNVKRAIEHLGYEVVV------SNTS------------------KIIDQAETIILPGV-GHFKDAM 53 (192)
T ss_pred EEEE-EcCCc--cHHHHHHHHHHcCCCEEE------EeCH------------------HHhccCCEEEECCC-CCHHHHH
Confidence 8899 89855 889999999999887644 3321 45778999999995 3321 1
Q ss_pred -----hHHHHHHHHHHHcCCCEEEEehhHHHHHHHh--c-cccccccCCcccccCCCCCCCeeeecCCCcccccCCceee
Q 008476 378 -----QGKILAAKYAREHRIPYLGICLGMQVAVIEF--A-RSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRL 449 (564)
Q Consensus 378 -----eg~i~~ir~a~e~~iPiLGICLGmQll~ia~--g-~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~Ggtmrl 449 (564)
.+..++++. ..++|+||||+|||+|+-.. + .+.||+-+....+|. ++.+++|+||+...
T Consensus 54 ~~L~~~gl~~~i~~--~~g~PvlGIClGmQlL~~~~~eg~~~GLgll~~~V~rf~-----------~~~~vph~GWn~~~ 120 (192)
T PRK13142 54 SEIKRLNLNAILAK--NTDKKMIGICLGMQLMYEHSDEGDASGLGFIPGNISRIQ-----------TEYPVPHLGWNNLV 120 (192)
T ss_pred HHHHHCCcHHHHHH--hCCCeEEEECHHHHHHhhhcccCCcCccCceeEEEEECC-----------CCCCCCcccccccC
Confidence 134455555 45899999999999998665 1 234555444433332 22357999996321
Q ss_pred cceeeEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCC-eEEEEEeCCCCcEEEEcccCCC
Q 008476 450 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQ-RMEIVELPNHPYFIGVQFHPEY 528 (564)
Q Consensus 450 G~~~v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~-~vE~ie~~~~pffiGvQFHPE~ 528 (564)
...+ ++. -+.++.|+|.+.. ... +.+.+.-|. .+.+++. ..++|+|||||+
T Consensus 121 --------~~~~----l~~----~~~yFVhSy~v~~-------~~~--v~~~~~yg~~~~~~v~~---~n~~g~QFHPEk 172 (192)
T PRK13142 121 --------SKHP----MLN----QDVYFVHSYQAPM-------SEN--VIAYAQYGADIPAIVQF---NNYIGIQFHPEK 172 (192)
T ss_pred --------CCCc----ccc----cEEEEECCCeECC-------CCC--EEEEEECCCeEEEEEEc---CCEEEEecCccc
Confidence 1111 221 1468889998831 122 223333333 2333432 237899999999
Q ss_pred cCCCCCchHHHHHHHH
Q 008476 529 KSRPGKPSPLFLGNIS 544 (564)
Q Consensus 529 ss~p~~p~pLF~~Fv~ 544 (564)
+... ...|+++|++
T Consensus 173 S~~~--G~~ll~nf~~ 186 (192)
T PRK13142 173 SGTY--GLQILRQAIQ 186 (192)
T ss_pred CcHh--HHHHHHHHHh
Confidence 8754 4789999975
No 52
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.83 E-value=1.1e-19 Score=186.18 Aligned_cols=191 Identities=21% Similarity=0.231 Sum_probs=118.3
Q ss_pred HHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCc----hhHHHHHHHHHHHc
Q 008476 315 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG----VQGKILAAKYAREH 390 (564)
Q Consensus 315 SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~----~eg~i~~ir~a~e~ 390 (564)
|++++|+++|+.+.. .+++.+. +.+.+.++.+||||+|||+.+.. ......+++.|++.
T Consensus 24 ~Yv~~l~~aG~~vvp----i~~~~~~-------------~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~ 86 (273)
T cd01747 24 SYVKFLESAGARVVP----IWINESE-------------EYYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALER 86 (273)
T ss_pred HHHHHHHHCCCeEEE----EEeCCcH-------------HHHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHh
Confidence 889999999998632 3444321 01235688999999999975432 22334455666665
Q ss_pred C-----CCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeEeecC---Cch
Q 008476 391 R-----IPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIK---DCK 462 (564)
Q Consensus 391 ~-----iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l~~~---~s~ 462 (564)
+ +|+||||||||+|+.++|+++..+.. + ...|+ ..++.+.+. +.+
T Consensus 87 ~~~g~~~Pv~GiClG~QlL~~~~gg~~~~~~~-----~-----------------~~~~~-----~~~l~~t~~~~~s~l 139 (273)
T cd01747 87 NDAGDYFPVWGTCLGFELLTYLTSGETLLLEA-----T-----------------EATNS-----ALPLNFTEDALQSRL 139 (273)
T ss_pred hhcCCCCcEEEEcHHHHHHHHHhCCCccccCC-----C-----------------ccccc-----eEEEEEccccccChh
Confidence 4 89999999999999999986421111 1 01122 122222221 111
Q ss_pred hhhccC----C-ceeEeeeeceeeeeChhhhhh---hccCCeEEEEEeCC--CC-eEEEEEeCCCCcEEEEcccCCCcCC
Q 008476 463 SAKLYG----N-RTFIDERHRHRYEVNPDMIAR---LENAGLSFTGKDET--SQ-RMEIVELPNHPYFIGVQFHPEYKSR 531 (564)
Q Consensus 463 ~~~iyg----~-~~~I~erh~HrYeVn~~~v~~---l~~~gl~~~a~s~d--g~-~vE~ie~~~~pffiGvQFHPE~ss~ 531 (564)
+..+-. . ......+|+|+|.+.++.... | +..+.+++.+.+ |. .+++++++++|+ +|+|||||++..
T Consensus 140 F~~~p~~l~~~l~~~~~~~~~Hs~~v~~~~~~~~~~l-~~~~~vla~~~d~~g~~fis~ie~~~~pi-~gvQFHPEks~f 217 (273)
T cd01747 140 FKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGLL-SDFFNVLTTNDDWNGVEFISTVEAYKYPI-YGVQWHPEKNAF 217 (273)
T ss_pred hhcCCHHHHHHHhcccHHHhhcccccCHhhccccccc-ccceEEEEEEecCCCceEEEEEEecCCce-EEEecCCCcccc
Confidence 211100 0 112347899999998766432 2 345688888765 43 479999999995 599999999877
Q ss_pred CCCc-----h---------HHHHHHHHHHhccCC
Q 008476 532 PGKP-----S---------PLFLGNISHLYFVCV 551 (564)
Q Consensus 532 p~~p-----~---------pLF~~Fv~aa~~~~~ 551 (564)
.+.+ | .+-.-|+++|+++..
T Consensus 218 ew~~~~~~~hs~~ai~~~q~~a~ffv~e~r~n~~ 251 (273)
T cd01747 218 EWKKSSSIPHSEEAIRLTQYFANFFVNEARKSNN 251 (273)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 6553 1 244557778877643
No 53
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.83 E-value=1.5e-19 Score=177.33 Aligned_cols=193 Identities=19% Similarity=0.196 Sum_probs=119.2
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCC-Cc-
Q 008476 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN-RG- 376 (564)
Q Consensus 299 ~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~-r~- 376 (564)
+|+++ ||+.. +-.++.++|+..|+++.+ +... +.++++||||+|||... ..
T Consensus 1 ~i~~~-d~~~~--~~~~i~~~l~~~G~~v~~------~~~~------------------~~l~~~d~iiipG~~~~~~~~ 53 (205)
T PRK13141 1 MIAII-DYGMG--NLRSVEKALERLGAEAVI------TSDP------------------EEILAADGVILPGVGAFPDAM 53 (205)
T ss_pred CEEEE-EcCCc--hHHHHHHHHHHCCCeEEE------ECCH------------------HHhccCCEEEECCCCchHHHH
Confidence 37888 88844 347999999999988755 2110 35678999999986321 11
Q ss_pred ----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcc--c--cccccCCcccccCCCCCCCeeeecCCCcccccCCcee
Q 008476 377 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFAR--S--VLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMR 448 (564)
Q Consensus 377 ----~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~--~--vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~Ggtmr 448 (564)
..+....++.+.++++|+||||+|||+|+.++.. . .+|+-++.... .+. +.-++...
T Consensus 54 ~~~~~~~~~~~i~~~~~~~~pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~~------------~~~---~~~~~~~~ 118 (205)
T PRK13141 54 ANLRERGLDEVIKEAVASGKPLLGICLGMQLLFESSEEFGETEGLGLLPGRVRR------------FPP---EEGLKVPH 118 (205)
T ss_pred HHHHHcChHHHHHHHHHCCCcEEEECHHHHHhhhccccCCCCCccceEEEEEEE------------cCC---CCCCcccE
Confidence 1245677888888999999999999999876311 1 11111111110 000 00011122
Q ss_pred ecceeeEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCC
Q 008476 449 LGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEY 528 (564)
Q Consensus 449 lG~~~v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ 528 (564)
.|.+.+.+.+++.++..+. .... .++.|++.+.+ ..++.+++.+.++..++++.. +.+ ++|||||||+
T Consensus 119 ~g~~~i~~~~~~~l~~~l~-~~~~--v~~~Hs~~v~~-------~~~~~v~a~~~~~~~~~a~~~-~~~-i~GvQfHPE~ 186 (205)
T PRK13141 119 MGWNQLELKKESPLLKGIP-DGAY--VYFVHSYYADP-------CDEEYVAATTDYGVEFPAAVG-KDN-VFGAQFHPEK 186 (205)
T ss_pred ecCccceeCCCChhhhCCC-CCCE--EEEECeeEecc-------CCcCeEEEEEeCCcEEEEEEe-cCC-EEEEeCCCcc
Confidence 3455666555433443332 2222 34568888742 345778888776655777765 344 7799999999
Q ss_pred cCCCCCchHHHHHHHHHHh
Q 008476 529 KSRPGKPSPLFLGNISHLY 547 (564)
Q Consensus 529 ss~p~~p~pLF~~Fv~aa~ 547 (564)
... ....+|++|+++|+
T Consensus 187 ~~~--~g~~l~~~fl~~~~ 203 (205)
T PRK13141 187 SGD--VGLKILKNFVEMVE 203 (205)
T ss_pred chH--HHHHHHHHHHHHhh
Confidence 753 45799999999874
No 54
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.82 E-value=2.6e-19 Score=206.33 Aligned_cols=195 Identities=16% Similarity=0.173 Sum_probs=127.3
Q ss_pred ceEEEEEeccCCCcchHH-HHHHHHHHc-CCcceeeeEEEEecCCCcccccccCCchhhhHHH---HhccCCCEEEeCCC
Q 008476 297 PVRIAMVGKYTGLSDAYL-SILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAW---KLLKGADGILVPGG 371 (564)
Q Consensus 297 ~~~IavVGkY~~~~Day~-SIi~aL~~a-G~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~---~~L~~~DGIllpGG 371 (564)
.++|.+|+.|. +|. +++..|+.. |..+.+ +..+++. ++++. ..+..+|||||+||
T Consensus 81 ~~~iLlIDnyD----SfTyNL~~~L~~~~g~~~~V------v~nd~~~----------~~~~~~~~~~~~~~d~IVlSPG 140 (918)
T PLN02889 81 FVRTLLIDNYD----SYTYNIYQELSIVNGVPPVV------VRNDEWT----------WEEVYHYLYEEKAFDNIVISPG 140 (918)
T ss_pred cceEEEEeCCC----chHHHHHHHHHHhcCCCEEE------EeCCCCC----------HHHHHhhhhcccCCCEEEECCC
Confidence 47999999887 544 799999988 877644 2222221 01111 12468899999999
Q ss_pred CCCCchhHH----HHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCce
Q 008476 372 FGNRGVQGK----ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTM 447 (564)
Q Consensus 372 fG~r~~eg~----i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~Ggtm 447 (564)
||+|..... ++.++.+ .++|+||||||||+|+.++|++|...+. +.+|...
T Consensus 141 PG~P~~~~d~Gi~~~~i~~~--~~iPILGICLGhQ~i~~~~Gg~V~~~~~-----------------------~~HG~~s 195 (918)
T PLN02889 141 PGSPTCPADIGICLRLLLEC--RDIPILGVCLGHQALGYVHGARIVHAPE-----------------------PVHGRLS 195 (918)
T ss_pred CCCccchHHHHHHHHHHHHh--CCCcEEEEcHHHHHHHHhcCceEEeCCC-----------------------ceeeeee
Confidence 999853222 2333322 4799999999999999999999855331 1123211
Q ss_pred eecceeeEeecCCchhhhccCC---ceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCC--------------------
Q 008476 448 RLGSRRTYFQIKDCKSAKLYGN---RTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET-------------------- 504 (564)
Q Consensus 448 rlG~~~v~l~~~~s~~~~iyg~---~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~d-------------------- 504 (564)
.+.. .+..++..+..+ ...+ .| .|+..|++..+ +.+++++|++.+
T Consensus 196 -----~I~h-~~~~lF~glp~~~~~~f~v-~R-YHSL~v~~~~l----P~~L~~~A~t~~~~~~~~~~~~~~~~~~~a~~ 263 (918)
T PLN02889 196 -----EIEH-NGCRLFDDIPSGRNSGFKV-VR-YHSLVIDAESL----PKELVPIAWTSSSDTLSFLESQKSGLVPDAYE 263 (918)
T ss_pred -----eEee-cCchhhcCCCcCCCCCceE-Ee-CCCcccccCCC----CCceEEEEEECCCccccccccccccccccccc
Confidence 1111 121344444311 1222 33 48887765433 456777776644
Q ss_pred --------------------------------CCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhccC
Q 008476 505 --------------------------------SQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGNISHLYFVC 550 (564)
Q Consensus 505 --------------------------------g~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~~ 550 (564)
+..+++++|+.+|+ +|||||||....+. ...||++|++++.++.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMairH~~~P~-~GVQfHPESi~t~~-G~~l~~nF~~~~~~~~ 339 (918)
T PLN02889 264 SQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHSTRPH-YGLQFHPESIATCY-GRQIFKNFREITQDYW 339 (918)
T ss_pred ccccccccccccccccccccccccccccccCCCCeeEEEEECCCce-EEEEeCCccccCch-hHHHHHHHHHHHHHHh
Confidence 13699999999995 59999999988875 5899999999998664
No 55
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.81 E-value=8.4e-19 Score=171.71 Aligned_cols=195 Identities=18% Similarity=0.183 Sum_probs=118.1
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-
Q 008476 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 376 (564)
Q Consensus 298 ~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~- 376 (564)
+||+|+ ||+.. .-.++.++|+.+|+++.+ ++. . +.++++|||++|||.....
T Consensus 1 ~~~~v~-~~~~~--~~~~~~~~l~~~G~~~~~------~~~--~----------------~~~~~~d~iii~G~~~~~~~ 53 (200)
T PRK13143 1 MMIVII-DYGVG--NLRSVSKALERAGAEVVI------TSD--P----------------EEILDADGIVLPGVGAFGAA 53 (200)
T ss_pred CeEEEE-ECCCc--cHHHHHHHHHHCCCeEEE------ECC--H----------------HHHccCCEEEECCCCCHHHH
Confidence 479999 88743 447999999999988654 111 0 3467899999998533221
Q ss_pred ---hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeeccee
Q 008476 377 ---VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRR 453 (564)
Q Consensus 377 ---~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~ 453 (564)
.....+.++.+.++++|+||||+|||+|+.++... -..+.+. ..+..+.........+ +.|.++
T Consensus 54 ~~~~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~~~~g-~~~~~lg------~~~g~v~~~~~~~~~~------~~g~~~ 120 (200)
T PRK13143 54 MENLSPLRDVILEAARSGKPFLGICLGMQLLFESSEEG-GGVRGLG------LFPGRVVRFPAGVKVP------HMGWNT 120 (200)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhhhccC-CCCCCcc------eeeEEEEEcCCCCCCC------eecceE
Confidence 24567788888899999999999999998754210 0000000 0000011000000112 234455
Q ss_pred eEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCC
Q 008476 454 TYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPG 533 (564)
Q Consensus 454 v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~ 533 (564)
+.+..++.++..+ . ... ..+.|+|.+.+ ..++.++++++++..+++....+ | ++|+|||||++..
T Consensus 121 v~~~~~~~l~~~l-~-~~~--~~~~Hs~~~~~-------~~~~~~la~~~~~~~~~~~~~~~-~-~~gvQfHPE~~~~-- 185 (200)
T PRK13143 121 VKVVKDCPLFEGI-D-GEY--VYFVHSYYAYP-------DDEDYVVATTDYGIEFPAAVCND-N-VFGTQFHPEKSGE-- 185 (200)
T ss_pred EEEcCCChhhccC-C-CcE--EEEEeeeeeCC-------CCcceEEEEEcCCCEEEEEEEcC-C-EEEEeCCCccchH--
Confidence 5554442334344 2 222 34578887742 23467888887766455555443 4 7799999999742
Q ss_pred CchHHHHHHHHHHh
Q 008476 534 KPSPLFLGNISHLY 547 (564)
Q Consensus 534 ~p~pLF~~Fv~aa~ 547 (564)
....||++|++.+.
T Consensus 186 ~g~~i~~~f~~~~~ 199 (200)
T PRK13143 186 TGLKILENFVELIK 199 (200)
T ss_pred HHHHHHHHHHHHHh
Confidence 34689999998764
No 56
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.81 E-value=5.3e-19 Score=173.20 Aligned_cols=186 Identities=23% Similarity=0.212 Sum_probs=111.2
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCch--
Q 008476 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 377 (564)
Q Consensus 300 IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~-- 377 (564)
|++| ||+.. +-.|+.++|+..|+++.+ +... +.+.++|+||+||+ |++..
T Consensus 2 i~ii-d~g~~--n~~~v~~~l~~~g~~~~~------~~~~------------------~~l~~~d~lilPG~-g~~~~~~ 53 (201)
T PRK13152 2 IALI-DYKAG--NLNSVAKAFEKIGAINFI------AKNP------------------KDLQKADKLLLPGV-GSFKEAM 53 (201)
T ss_pred EEEE-ECCCC--cHHHHHHHHHHCCCeEEE------ECCH------------------HHHcCCCEEEECCC-CchHHHH
Confidence 8899 89844 568999999999876533 3221 34678999999774 44321
Q ss_pred h-----HHHHHH-HHHHHcCCCEEEEehhHHHHHHH-h-ccccccccCCcccccCCCCCCCeeeec--CCCcccccCCce
Q 008476 378 Q-----GKILAA-KYAREHRIPYLGICLGMQVAVIE-F-ARSVLNLRDANSTEFDPNTKNPCVIFM--PEGSKTHMGGTM 447 (564)
Q Consensus 378 e-----g~i~~i-r~a~e~~iPiLGICLGmQll~ia-~-g~~vlgl~dA~s~Ef~~~~~~~vi~~m--~e~~~~~~Ggtm 447 (564)
. +....+ +++.+.++|+||||+|||+|+.+ . ++..-+|- .+ +..|..+- +....+|+||
T Consensus 54 ~~l~~~~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~~~~~~~~~~lg-----~~----~g~v~~~~~~~~~~~~~~g~-- 122 (201)
T PRK13152 54 KNLKELGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLG-----FI----EGEVVKFEEDLNLKIPHMGW-- 122 (201)
T ss_pred HHHHHcCcHHHHHHHHHhCCCcEEEECHhHHHHhhcccccCCcCCcc-----cc----cEEEEECCCCCCCcCCccCe--
Confidence 1 223444 44567899999999999999876 1 22111110 00 11111110 0112356665
Q ss_pred eecceeeEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCC-eEEEEEeCCCCcEEEEcccC
Q 008476 448 RLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQ-RMEIVELPNHPYFIGVQFHP 526 (564)
Q Consensus 448 rlG~~~v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~-~vE~ie~~~~pffiGvQFHP 526 (564)
+++.+.+++.++..+ +. ....++.|+|.+... ...+++.++++. .+++++ +. +++|+||||
T Consensus 123 ----~~v~~~~~~~l~~~l-~~--~~~~~~vHS~~v~~~--------~~~v~a~~~~g~~~~~a~~--~~-~i~GvQFHP 184 (201)
T PRK13152 123 ----NELEILKQSPLYQGI-PE--KSDFYFVHSFYVKCK--------DEFVSAKAQYGHKFVASLQ--KD-NIFATQFHP 184 (201)
T ss_pred ----EEEEECCCChhhhCC-CC--CCeEEEEcccEeecC--------CCcEEEEECCCCEEEEEEe--cC-CEEEEeCCC
Confidence 455555553333333 22 234577899887531 134677777664 345555 33 478999999
Q ss_pred CCcCCCCCchHHHHHHHH
Q 008476 527 EYKSRPGKPSPLFLGNIS 544 (564)
Q Consensus 527 E~ss~p~~p~pLF~~Fv~ 544 (564)
|++.. ....||++|++
T Consensus 185 E~~~~--~g~~ll~~Fl~ 200 (201)
T PRK13152 185 EKSQN--LGLKLLENFAR 200 (201)
T ss_pred eecCh--hhHHHHHHHHh
Confidence 99853 35789999985
No 57
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.81 E-value=3.9e-19 Score=173.33 Aligned_cols=184 Identities=23% Similarity=0.277 Sum_probs=114.2
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCch--
Q 008476 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 377 (564)
Q Consensus 300 IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~-- 377 (564)
|+|+ ||+.. +-.++.++|+.+|+++.+ ++.. +.++++|+|++||| |.+..
T Consensus 1 i~i~-d~g~~--~~~~~~~~l~~~g~~v~v------~~~~------------------~~l~~~d~iiipG~-~~~~~~~ 52 (198)
T cd01748 1 IAII-DYGMG--NLRSVANALERLGAEVII------TSDP------------------EEILSADKLILPGV-GAFGDAM 52 (198)
T ss_pred CEEE-eCCCC--hHHHHHHHHHHCCCeEEE------EcCh------------------HHhccCCEEEECCC-CcHHHHH
Confidence 5778 88854 567999999999988755 2211 34678999999875 44321
Q ss_pred -----hHHHHHHHHHHHcCCCEEEEehhHHHHHHHh--cccc--ccccCCcccccCCCCCCCeeeecCC---CcccccCC
Q 008476 378 -----QGKILAAKYAREHRIPYLGICLGMQVAVIEF--ARSV--LNLRDANSTEFDPNTKNPCVIFMPE---GSKTHMGG 445 (564)
Q Consensus 378 -----eg~i~~ir~a~e~~iPiLGICLGmQll~ia~--g~~v--lgl~dA~s~Ef~~~~~~~vi~~m~e---~~~~~~Gg 445 (564)
.+..+.++.+.++++|+||||+|||+|+.++ |+.+ +++-+ ..+.. ++. .+.+++|+
T Consensus 53 ~~~~~~~~~~~i~~~~~~~~pilGiC~G~q~l~~~~~~g~~~~~lg~~~-----------g~v~~-~~~~~~~~~~~~G~ 120 (198)
T cd01748 53 ANLRERGLIEALKEAIASGKPFLGICLGMQLLFESSEEGGGTKGLGLIP-----------GKVVR-FPASEGLKVPHMGW 120 (198)
T ss_pred HHHHHcChHHHHHHHHHCCCcEEEECHHHHHhccccccCCCCCCCCCcc-----------eEEEE-CCCCCCceEEEecc
Confidence 2457788888889999999999999998763 1111 11111 11111 010 11234454
Q ss_pred ceeecceeeEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEccc
Q 008476 446 TMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFH 525 (564)
Q Consensus 446 tmrlG~~~v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFH 525 (564)
+++...+++.++..+.. . ....+.|+|.+.+ ...+..+|.+.++..+.++ +.+.+ ++|+|||
T Consensus 121 ------~~v~~~~~~~lf~~l~~-~--~~v~~~Hs~~v~~-------~~~~~~la~s~~~~~~~~~-~~~~~-i~GvQFH 182 (198)
T cd01748 121 ------NQLEITKESPLFKGIPD-G--SYFYFVHSYYAPP-------DDPDYILATTDYGGKFPAA-VEKDN-IFGTQFH 182 (198)
T ss_pred ------ceEEECCCChhhhCCCC-C--CeEEEEeEEEEec-------CCcceEEEEecCCCeEEEE-EEcCC-EEEEECC
Confidence 44554444344555432 2 3356788888853 1235677777666534443 44555 6799999
Q ss_pred CCCcCCCCCchHHHHHHH
Q 008476 526 PEYKSRPGKPSPLFLGNI 543 (564)
Q Consensus 526 PE~ss~p~~p~pLF~~Fv 543 (564)
||++.. ....++++|+
T Consensus 183 PE~~~~--~g~~~~~nf~ 198 (198)
T cd01748 183 PEKSGK--AGLKLLKNFL 198 (198)
T ss_pred CccccH--hHHHHHHhhC
Confidence 999853 4678888884
No 58
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.80 E-value=9.5e-19 Score=193.89 Aligned_cols=187 Identities=17% Similarity=0.155 Sum_probs=121.0
Q ss_pred eEEEEEeccCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhc--cCCCEEEeCCCCCC
Q 008476 298 VRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGN 374 (564)
Q Consensus 298 ~~IavVGkY~~~~Day~-SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L--~~~DGIllpGGfG~ 374 (564)
.+|.+|+.|. +|. ++.+.|+..|+.+.+. .+..+.+. ..+.+ .++|+|||+||||+
T Consensus 2 ~~iLiIDn~d----sft~nl~~~lr~~g~~v~V~---~~~~~~~~--------------~~~~l~~~~~~~IIlSpGPg~ 60 (531)
T PRK09522 2 ADILLLDNID----SFTYNLADQLRSNGHNVVIY---RNHIPAQT--------------LIERLATMSNPVLMLSPGPGV 60 (531)
T ss_pred CeEEEEeCCC----hHHHHHHHHHHHCCCCEEEE---ECCCCCcc--------------CHHHHHhcCcCEEEEcCCCCC
Confidence 4799996555 555 7899999999877552 11111000 01222 35789999999999
Q ss_pred CchhHHH-HHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeeccee
Q 008476 375 RGVQGKI-LAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRR 453 (564)
Q Consensus 375 r~~eg~i-~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~ 453 (564)
+...+.. ..++. ...++|+||||+|||+|+.++|++|...+. ...|.+. .
T Consensus 61 p~d~~~~~~i~~~-~~~~iPILGIClG~QlLa~a~GG~V~~~~~-----------------------~~~G~~~-----~ 111 (531)
T PRK09522 61 PSEAGCMPELLTR-LRGKLPIIGICLGHQAIVEAYGGYVGQAGE-----------------------ILHGKAS-----S 111 (531)
T ss_pred hhhCCCCHHHHHH-HhcCCCEEEEcHHHHHHHHhcCCEEEeCCc-----------------------eeeeeEE-----E
Confidence 8643322 33332 345899999999999999999999843110 1112211 1
Q ss_pred eEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCC
Q 008476 454 TYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPG 533 (564)
Q Consensus 454 v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~ 533 (564)
+.. .+.+++..+. .... ..+.|++.+. .+ +.+++++|. .++. ++++++++.| ++|||||||...++.
T Consensus 112 i~~-~~~~lf~~~~-~~~~--v~~~Hs~~v~-----~l-P~~l~vlA~-sd~~-v~ai~~~~~~-i~GVQFHPEs~~T~~ 178 (531)
T PRK09522 112 IEH-DGQAMFAGLT-NPLP--VARYHSLVGS-----NI-PAGLTINAH-FNGM-VMAVRHDADR-VCGFQFHPESILTTQ 178 (531)
T ss_pred Eee-cCCccccCCC-CCcE--EEEehheecc-----cC-CCCcEEEEe-cCCC-EEEEEECCCC-EEEEEecCccccCcc
Confidence 111 1112333332 2223 4455777653 23 678999996 4665 9999999888 569999999998874
Q ss_pred CchHHHHHHHHHHhc
Q 008476 534 KPSPLFLGNISHLYF 548 (564)
Q Consensus 534 ~p~pLF~~Fv~aa~~ 548 (564)
...+|++|++.+..
T Consensus 179 -G~~il~NFl~~~~~ 192 (531)
T PRK09522 179 -GARLLEQTLAWAQQ 192 (531)
T ss_pred -hHHHHHHHHHHHhh
Confidence 68999999988763
No 59
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.80 E-value=8.8e-19 Score=171.22 Aligned_cols=186 Identities=24% Similarity=0.239 Sum_probs=112.7
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCch--
Q 008476 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 377 (564)
Q Consensus 300 IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~-- 377 (564)
|+|+ ||+.. ++.|+.++|+..|+++.+ +.. . +.+.++|+||+||| |++..
T Consensus 2 i~vi-d~g~g--n~~~~~~~l~~~g~~v~~------~~~--~----------------~~l~~~d~lilpG~-g~~~~~~ 53 (199)
T PRK13181 2 IAII-DYGAG--NLRSVANALKRLGVEAVV------SSD--P----------------EEIAGADKVILPGV-GAFGQAM 53 (199)
T ss_pred EEEE-eCCCC--hHHHHHHHHHHCCCcEEE------EcC--h----------------HHhccCCEEEECCC-CCHHHHH
Confidence 7888 89855 788999999999987644 211 0 34678999999885 44321
Q ss_pred -----hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcc---ccccccCCcccccCCCCCCCeeeecCCCcccccCCceee
Q 008476 378 -----QGKILAAKYAREHRIPYLGICLGMQVAVIEFAR---SVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRL 449 (564)
Q Consensus 378 -----eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~---~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~Ggtmrl 449 (564)
.+....++.+.+.++|+||||+|||+|+.+... +-+++-++...+.+.. ....+++|+
T Consensus 54 ~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~~~~----------~~~~~~~G~---- 119 (199)
T PRK13181 54 RSLRESGLDEALKEHVEKKQPVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRFRSE----------PLKVPQMGW---- 119 (199)
T ss_pred HHHHHCChHHHHHHHHHCCCCEEEECHhHHHhhhhcccCCcCCcceEEEEEEEcCCC----------CCCCCccCc----
Confidence 245677888888999999999999999987321 1111111111111000 001244555
Q ss_pred cceeeEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCe-EEEEEeCCCCcEEEEcccCCC
Q 008476 450 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQR-MEIVELPNHPYFIGVQFHPEY 528 (564)
Q Consensus 450 G~~~v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~-vE~ie~~~~pffiGvQFHPE~ 528 (564)
+++.+.+++.++..+. ... ...+.|+|.+.+. + ...++|.++++.. +++++ +.+ ++|+|||||+
T Consensus 120 --~~v~~~~~~~lf~~l~-~~~--~~~~~Hs~~v~~~------~-~~~~lA~s~~~~~~~~~~~--~~~-i~GvQFHPE~ 184 (199)
T PRK13181 120 --NSVKPLKESPLFKGIE-EGS--YFYFVHSYYVPCE------D-PEDVLATTEYGVPFCSAVA--KDN-IYAVQFHPEK 184 (199)
T ss_pred --cccccCCCChhHcCCC-CCC--EEEEeCeeEeccC------C-cccEEEEEcCCCEEEEEEE--CCC-EEEEECCCcc
Confidence 3444334423443332 222 3457788887432 1 1346777766542 23333 445 6799999998
Q ss_pred cCCCCCchHHHHHHHH
Q 008476 529 KSRPGKPSPLFLGNIS 544 (564)
Q Consensus 529 ss~p~~p~pLF~~Fv~ 544 (564)
+. + ....+|++|++
T Consensus 185 ~~-~-~g~~ll~nfl~ 198 (199)
T PRK13181 185 SG-K-AGLKLLKNFAE 198 (199)
T ss_pred CC-H-HHHHHHHHHHh
Confidence 74 2 45789999975
No 60
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.79 E-value=2.3e-18 Score=166.12 Aligned_cols=139 Identities=23% Similarity=0.272 Sum_probs=97.9
Q ss_pred hccCCCEEEeCCCCCCC---c---hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCee
Q 008476 359 LLKGADGILVPGGFGNR---G---VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCV 432 (564)
Q Consensus 359 ~L~~~DGIllpGGfG~r---~---~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi 432 (564)
.+.++||||+|||+.+. . .....+.++++.++++|+||||+|||+|+.++|+++...+.
T Consensus 43 ~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~lGG~v~~~~~--------------- 107 (188)
T cd01741 43 DLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQLLARALGGKVGRNPK--------------- 107 (188)
T ss_pred CcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHHhCCEEecCCC---------------
Confidence 47899999999998764 1 25577889999999999999999999999999998743210
Q ss_pred eecCCCcccccCCceeecceeeEeecCCchhhhccCC-ceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEE
Q 008476 433 IFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGN-RTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIV 511 (564)
Q Consensus 433 ~~m~e~~~~~~GgtmrlG~~~v~l~~~~s~~~~iyg~-~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~i 511 (564)
| ...|.+++.+.+. .....++.+ ...+...+.|+++|.. + +.+++++|.++++. ++++
T Consensus 108 -----------~--~~~g~~~v~~~~~-~~~~~l~~~~~~~~~v~~~H~~~v~~-----l-p~~~~~la~~~~~~-v~~~ 166 (188)
T cd01741 108 -----------G--WEIGWFPVTLTEA-GKADPLFAGLPDEFPVFHWHGDTVVE-----L-PPGAVLLASSEACP-NQAF 166 (188)
T ss_pred -----------c--ceeEEEEEEeccc-cccCchhhcCCCcceEEEEeccChhh-----C-CCCCEEeecCCCCC-cceE
Confidence 1 1223455555443 111112211 1234466778877642 3 67899999988776 9999
Q ss_pred EeCCCCcEEEEcccCCCcCCCCCchHHHHHHH
Q 008476 512 ELPNHPYFIGVQFHPEYKSRPGKPSPLFLGNI 543 (564)
Q Consensus 512 e~~~~pffiGvQFHPE~ss~p~~p~pLF~~Fv 543 (564)
+.+ ..++|+||||| ..+|++|+
T Consensus 167 ~~~--~~~~g~QfHPE--------~~~~~~f~ 188 (188)
T cd01741 167 RYG--DRALGLQFHPE--------ERLLRNFL 188 (188)
T ss_pred Eec--CCEEEEccCch--------HHHHhhhC
Confidence 997 34789999999 57777773
No 61
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.78 E-value=2.6e-18 Score=173.06 Aligned_cols=201 Identities=14% Similarity=0.173 Sum_probs=118.2
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-
Q 008476 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 376 (564)
Q Consensus 298 ~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~- 376 (564)
+||+|+.- +.++.++.++|+++|+++.. +... +.+.++|||+|||||++.-
T Consensus 2 m~igVLa~----qG~~~e~~~aL~~lG~ev~~------v~~~------------------~~L~~~DgLILPGGfs~~~~ 53 (248)
T PLN02832 2 MAIGVLAL----QGSFNEHIAALRRLGVEAVE------VRKP------------------EQLEGVSGLIIPGGESTTMA 53 (248)
T ss_pred cEEEEEeC----CCchHHHHHHHHHCCCcEEE------eCCH------------------HHhccCCEEEeCCCHHHHHH
Confidence 58999954 44889999999999987643 2221 4578999999999987531
Q ss_pred -h---hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhc------cccccccCCcccccCCCCCCCeeeecCCCcccccCCc
Q 008476 377 -V---QGKILAAKYAREHRIPYLGICLGMQVAVIEFA------RSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 446 (564)
Q Consensus 377 -~---eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g------~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~Ggt 446 (564)
. .+..+.++.+.++++|+||||+|||+|+-..- ...++.-|....+ .-.+..+..+-+..+++|+||+
T Consensus 54 ~L~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~~~~~~~~~~~~lg~Ldi~v~R--N~~g~qv~sfe~~l~ip~~gwn 131 (248)
T PLN02832 54 KLAERHNLFPALREFVKSGKPVWGTCAGLIFLAERAVGQKEGGQELLGGLDCTVHR--NFFGSQINSFETELPVPELAAS 131 (248)
T ss_pred HHHhhcchHHHHHHHHHcCCCEEEEChhHHHHHHHhcccccCCcceeCCccceEEe--cccCceeEeEEcCCcCCccccc
Confidence 1 25677788887889999999999999976641 2223443322222 0112333333334567999985
Q ss_pred e-eecceeeEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCC--CeEEEEEeCCCCcEEEEc
Q 008476 447 M-RLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETS--QRMEIVELPNHPYFIGVQ 523 (564)
Q Consensus 447 m-rlG~~~v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg--~~vE~ie~~~~pffiGvQ 523 (564)
. +....+..+... +.+... + . ..+.-|+|.++++... ...+++..+ ..+.+++-. +++|+|
T Consensus 132 ~~~~~~~~~vFira-p~i~~~-~--~--~v~~l~sy~~~~~~~~-------~~~a~~~y~~~~~~~aV~qg---nvlatq 195 (248)
T PLN02832 132 EGGPETFRAVFIRA-PAILSV-G--P--GVEVLAEYPLPSEKAL-------YSSSTDAEGRDKVIVAVKQG---NLLATA 195 (248)
T ss_pred cccccccceEEecC-CceEeC-C--C--cEEEEEEecccccccc-------cccccccccCCceEEEEEeC---CEEEEE
Confidence 3 111222222222 111111 1 1 2356688876543211 011222222 112222222 278999
Q ss_pred ccCCCcCCCCCchHHHHHHHHHHhc
Q 008476 524 FHPEYKSRPGKPSPLFLGNISHLYF 548 (564)
Q Consensus 524 FHPE~ss~p~~p~pLF~~Fv~aa~~ 548 (564)
||||+++.. .++++|++.+..
T Consensus 196 FHPEls~d~----rih~~Fl~~~~~ 216 (248)
T PLN02832 196 FHPELTADT----RWHSYFVKMVSE 216 (248)
T ss_pred ccCccCCcc----HHHHHHHHHHHH
Confidence 999999875 788888887754
No 62
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.78 E-value=8.9e-18 Score=169.05 Aligned_cols=181 Identities=18% Similarity=0.175 Sum_probs=119.1
Q ss_pred CceEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 008476 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (564)
Q Consensus 296 ~~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r 375 (564)
.+++|.++-+|... .-.++.+.|+..|.++.+. -...++. ..+.++++||+||+||+++.
T Consensus 6 ~~~~vlvi~h~~~~--~~g~l~~~l~~~g~~~~v~----~~~~~~~--------------~p~~l~~~dgvii~Ggp~~~ 65 (239)
T PRK06490 6 DKRPVLIVLHQERS--TPGRVGQLLQERGYPLDIR----RPRLGDP--------------LPDTLEDHAGAVIFGGPMSA 65 (239)
T ss_pred CCceEEEEecCCCC--CChHHHHHHHHCCCceEEE----eccCCCC--------------CCCcccccCEEEEECCCCCC
Confidence 35788888666522 3457888999999887652 1111111 01346789999999998864
Q ss_pred c-----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeec
Q 008476 376 G-----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLG 450 (564)
Q Consensus 376 ~-----~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG 450 (564)
. +...++.++.+.+.++|+||||+|||+|+.++|++|.+.+. |+ ...|
T Consensus 66 ~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~~~--------------------------G~-~e~G 118 (239)
T PRK06490 66 NDPDDFIRREIDWISVPLKENKPFLGICLGAQMLARHLGARVAPHPD--------------------------GR-VEIG 118 (239)
T ss_pred CCCchHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHcCCEeecCCC--------------------------CC-Cccc
Confidence 2 24466788888899999999999999999999999843210 11 1223
Q ss_pred ceeeEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcC
Q 008476 451 SRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKS 530 (564)
Q Consensus 451 ~~~v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss 530 (564)
.+++.+.+....+..+ . ...+|.|++.+ .+ +.++.++|.++++. ++++++.++ ++|+|||||++
T Consensus 119 ~~~i~~~~~~~~~~~~---~--~~~~~~H~d~~------~l-P~~~~~LA~s~~~~-~qa~~~~~~--v~g~QfHPE~~- 182 (239)
T PRK06490 119 YYPLRPTEAGRALMHW---P--EMVYHWHREGF------DL-PAGAELLATGDDFP-NQAFRYGDN--AWGLQFHPEVT- 182 (239)
T ss_pred eEEeEECCCcccccCC---C--CEEEEECCccc------cC-CCCCEEEEeCCCCC-eEEEEeCCC--EEEEeeCccCC-
Confidence 3455554431222111 1 12455666542 23 67899999987776 999999763 77999999997
Q ss_pred CCCCchHHHHHHHH
Q 008476 531 RPGKPSPLFLGNIS 544 (564)
Q Consensus 531 ~p~~p~pLF~~Fv~ 544 (564)
..++..++.
T Consensus 183 -----~~~~~~~i~ 191 (239)
T PRK06490 183 -----RAMMHRWVV 191 (239)
T ss_pred -----HHHHHHHHH
Confidence 245555554
No 63
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.78 E-value=6.8e-18 Score=164.09 Aligned_cols=180 Identities=17% Similarity=0.211 Sum_probs=114.8
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-
Q 008476 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 376 (564)
Q Consensus 298 ~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~- 376 (564)
++|+|+.- +.+|.|..++|+.+|+.+.. ++.. +.++++|||++|||++...
T Consensus 2 m~~~i~~~----~g~~~~~~~~l~~~g~~~~~------~~~~------------------~~l~~~dgiii~GG~~~~~~ 53 (189)
T PRK13525 2 MKIGVLAL----QGAVREHLAALEALGAEAVE------VRRP------------------EDLDEIDGLILPGGESTTMG 53 (189)
T ss_pred CEEEEEEc----ccCHHHHHHHHHHCCCEEEE------eCCh------------------hHhccCCEEEECCCChHHHH
Confidence 57888842 33888999999999987643 2211 3467899999999976531
Q ss_pred ----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccc---cccccCCcccccCCCCCCCeeeecCCCcccccCCceee
Q 008476 377 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARS---VLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRL 449 (564)
Q Consensus 377 ----~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~---vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~Ggtmrl 449 (564)
.....+.++.+.++++|+||||+|+|+|+.++|+. -+|+-++.... ...|+. .
T Consensus 54 ~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~lg~~~~~v~~------------------~~~g~~--~ 113 (189)
T PRK13525 54 KLLRDFGLLEPLREFIASGLPVFGTCAGMILLAKEIEGYEQEHLGLLDITVRR------------------NAFGRQ--V 113 (189)
T ss_pred HHHHhccHHHHHHHHHHCCCeEEEECHHHHHHHhhcccCCCCceeeEEEEEEE------------------ccCCCc--e
Confidence 12345778888899999999999999999988774 11111111000 011221 1
Q ss_pred cceeeEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCc
Q 008476 450 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYK 529 (564)
Q Consensus 450 G~~~v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~s 529 (564)
|..... .++..+ + ..+..++.|.++|. .+ +.++.++|.+. +. +++++. . +++|+|||||++
T Consensus 114 g~~~~~-----~~~~~~-~--~~~~~~~~H~d~v~-----~l-p~~~~vlA~~~-~~-~~~~~~--~-~~~g~QfHPE~~ 174 (189)
T PRK13525 114 DSFEAE-----LDIKGL-G--EPFPAVFIRAPYIE-----EV-GPGVEVLATVG-GR-IVAVRQ--G-NILATSFHPELT 174 (189)
T ss_pred eeEEec-----ccccCC-C--CCeEEEEEeCceee-----cc-CCCcEEEEEcC-CE-EEEEEe--C-CEEEEEeCCccC
Confidence 111111 112221 1 12345677776653 34 57888999874 43 667654 2 478999999998
Q ss_pred CCCCCchHHHHHHHHHHhc
Q 008476 530 SRPGKPSPLFLGNISHLYF 548 (564)
Q Consensus 530 s~p~~p~pLF~~Fv~aa~~ 548 (564)
.. ..||++|++.|.+
T Consensus 175 ~~----~~~~~~f~~~~~~ 189 (189)
T PRK13525 175 DD----TRVHRYFLEMVKE 189 (189)
T ss_pred CC----chHHHHHHHHhhC
Confidence 64 5899999998863
No 64
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.78 E-value=3.2e-18 Score=171.96 Aligned_cols=132 Identities=22% Similarity=0.288 Sum_probs=91.2
Q ss_pred hccCCCEEEeCCCCCCCc-----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeee
Q 008476 359 LLKGADGILVPGGFGNRG-----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVI 433 (564)
Q Consensus 359 ~L~~~DGIllpGGfG~r~-----~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~ 433 (564)
.+.++|||||+||+.+.. .....+.++.+.++++|+||||+|||+|+.++|++|..-+
T Consensus 51 ~~~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~----------------- 113 (237)
T PRK09065 51 APDDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHALGGEVGYNP----------------- 113 (237)
T ss_pred ChhhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHHcCCccccCC-----------------
Confidence 356889999999987631 2456788899999999999999999999999999884211
Q ss_pred ecCCCcccccCCceeecceeeEeecC---CchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEE
Q 008476 434 FMPEGSKTHMGGTMRLGSRRTYFQIK---DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEI 510 (564)
Q Consensus 434 ~m~e~~~~~~GgtmrlG~~~v~l~~~---~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ 510 (564)
.|+ ..|.+++.+.+. +.++..+. .. +...+.|+++| ..+ +.++.++|.++++. +++
T Consensus 114 ---------~g~--e~G~~~v~~~~~~~~~~l~~~~~-~~--~~v~~~H~d~v-----~~l-p~~~~~la~s~~~~-iqa 172 (237)
T PRK09065 114 ---------AGR--ESGTVTVELHPAAADDPLFAGLP-AQ--FPAHLTHLQSV-----LRL-PPGAVVLARSAQDP-HQA 172 (237)
T ss_pred ---------CCC--ccceEEEEEccccccChhhhcCC-cc--CcEeeehhhhh-----hhC-CCCCEEEEcCCCCC-eeE
Confidence 011 123455555432 12232221 22 33445566554 234 67999999988776 999
Q ss_pred EEeCCCCcEEEEcccCCCcC
Q 008476 511 VELPNHPYFIGVQFHPEYKS 530 (564)
Q Consensus 511 ie~~~~pffiGvQFHPE~ss 530 (564)
++++++ ++|+|||||+++
T Consensus 173 ~~~~~~--i~gvQfHPE~~~ 190 (237)
T PRK09065 173 FRYGPH--AWGVQFHPEFTA 190 (237)
T ss_pred EEeCCC--EEEEEeCCcCCH
Confidence 999763 779999999863
No 65
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.77 E-value=9.5e-18 Score=164.14 Aligned_cols=192 Identities=16% Similarity=0.205 Sum_probs=111.8
Q ss_pred eEEEEEeccCCCcchH-HHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCc
Q 008476 298 VRIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (564)
Q Consensus 298 ~~IavVGkY~~~~Day-~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~ 376 (564)
+|||++ -+-...+.| .++.++|+.+|..+.+ .++... +.+.++|+|++|||++...
T Consensus 1 ~~i~vl-~~~~~~~e~~~~~~~~l~~~g~~~~~----~~~~~~------------------~~l~~~d~iii~GG~~~~~ 57 (200)
T PRK13527 1 MKIGVL-ALQGDVEEHIDALKRALDELGIDGEV----VEVRRP------------------GDLPDCDALIIPGGESTTI 57 (200)
T ss_pred CEEEEE-EECCccHHHHHHHHHHHHhcCCCeEE----EEeCCh------------------HHhccCCEEEECCCcHHHH
Confidence 367766 232222233 3777888888876543 233210 3567899999999987641
Q ss_pred -----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCC-cccccCCceeec
Q 008476 377 -----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEG-SKTHMGGTMRLG 450 (564)
Q Consensus 377 -----~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~-~~~~~GgtmrlG 450 (564)
..+..+.++.+.++++|+||||+|||+|+.++|+... +.....+ +-.++-. .....|+..
T Consensus 58 ~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~~gg~~v--~~~~~~~---------lG~~~~~v~~~~~g~~~--- 123 (200)
T PRK13527 58 GRLMKREGILDEIKEKIEEGLPILGTCAGLILLAKEVGDDRV--TKTEQPL---------LGLMDVTVKRNAFGRQR--- 123 (200)
T ss_pred HHHHhhccHHHHHHHHHHCCCeEEEECHHHHHHHhhhcCCcc--CCCCCce---------eeeeEEEEeeccccCcc---
Confidence 2345788888888999999999999999999887331 1100000 1011000 000111100
Q ss_pred ceeeEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcC
Q 008476 451 SRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKS 530 (564)
Q Consensus 451 ~~~v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss 530 (564)
..+... .++..+ + ..+...+.|++.+. .+ +.+++++|.++++ +++++. . +++|+|||||++.
T Consensus 124 ---~~~~~~-~~~~~~-~--~~~~~~~~H~~~v~-----~l-p~~~~~la~~~~~--~~a~~~--~-~~~g~QfHPE~~~ 185 (200)
T PRK13527 124 ---DSFEAE-IDLSGL-D--GPFHAVFIRAPAIT-----KV-GGDVEVLAKLDDR--IVAVEQ--G-NVLATAFHPELTD 185 (200)
T ss_pred ---ccEEEe-Eecccc-C--CcceEEEEcccccc-----cc-CCCeEEEEEECCE--EEEEEE--C-CEEEEEeCCCCCC
Confidence 000000 111111 1 12233455665553 23 5789999988765 446653 2 4789999999875
Q ss_pred CCCCchHHHHHHHHHHhc
Q 008476 531 RPGKPSPLFLGNISHLYF 548 (564)
Q Consensus 531 ~p~~p~pLF~~Fv~aa~~ 548 (564)
. ..+|++|++++..
T Consensus 186 ~----~~l~~~f~~~~~~ 199 (200)
T PRK13527 186 D----TRIHEYFLKKVKG 199 (200)
T ss_pred C----CHHHHHHHHHHhc
Confidence 4 5899999998853
No 66
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.77 E-value=3e-18 Score=167.75 Aligned_cols=181 Identities=23% Similarity=0.183 Sum_probs=116.4
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHcCC-cceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-
Q 008476 299 RIAMVGKYTGLSDAYLSILKALLHASV-DLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 376 (564)
Q Consensus 299 ~IavVGkY~~~~Day~SIi~aL~~aG~-~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~- 376 (564)
+|.|+ +++.. ...-|-+.++..|+ ...+ .....+.++ -...++|||||+|||.+..
T Consensus 3 ~ilIl-d~g~q--~~~li~r~~re~g~v~~e~--~~~~~~~~~-----------------~~~~~~~giIlsGgp~sv~~ 60 (198)
T COG0518 3 KILIL-DFGGQ--YLGLIARRLRELGYVYSEI--VPYTGDAEE-----------------LPLDSPDGIIISGGPMSVYD 60 (198)
T ss_pred EEEEE-eCCCc--HhHHHHHHHHHcCCceEEE--EeCCCCccc-----------------ccccCCCEEEEcCCCCCCcc
Confidence 68888 77642 44578888988884 3322 111111111 1234669999999995532
Q ss_pred ----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecce
Q 008476 377 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSR 452 (564)
Q Consensus 377 ----~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~ 452 (564)
.......|+++...++|+||||+|||+|+.++|++|..- ... .+|..
T Consensus 61 ~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~lGg~V~~~---~~~--------------------------E~G~~ 111 (198)
T COG0518 61 EDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKALGGKVERG---PKR--------------------------EIGWT 111 (198)
T ss_pred ccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHHhCCEEecc---CCC--------------------------ccceE
Confidence 233445555555556679999999999999999998421 111 23456
Q ss_pred eeEeec-CCchhhhccCCce-eEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcC
Q 008476 453 RTYFQI-KDCKSAKLYGNRT-FIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKS 530 (564)
Q Consensus 453 ~v~l~~-~~s~~~~iyg~~~-~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss 530 (564)
++.+.+ .+.++..+. ... .++.+|. +.+.++ +.|++++|.+++.. ++++++. .+ ++|+|||||++.
T Consensus 112 ~v~~~~~~~~l~~gl~-~~~~~v~~sH~-------D~v~~l-P~g~~vlA~s~~cp-~qa~~~~-~~-~~gvQFHpEv~~ 179 (198)
T COG0518 112 PVELTEGDDPLFAGLP-DLFTTVFMSHG-------DTVVEL-PEGAVVLASSETCP-NQAFRYG-KR-AYGVQFHPEVTH 179 (198)
T ss_pred EEEEecCccccccCCc-cccCccccchh-------CccccC-CCCCEEEecCCCCh-hhheecC-Cc-EEEEeeeeEEeH
Confidence 666653 112344433 122 2444444 556666 78999999987765 9999999 55 679999999998
Q ss_pred CCCCchHHHHHHHH
Q 008476 531 RPGKPSPLFLGNIS 544 (564)
Q Consensus 531 ~p~~p~pLF~~Fv~ 544 (564)
.....++++|..
T Consensus 180 --~~~~~~l~nf~~ 191 (198)
T COG0518 180 --EYGEALLENFAH 191 (198)
T ss_pred --HHHHHHHHHhhh
Confidence 234678888875
No 67
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.76 E-value=1.4e-17 Score=184.41 Aligned_cols=196 Identities=19% Similarity=0.233 Sum_probs=124.5
Q ss_pred CceEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 008476 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (564)
Q Consensus 296 ~~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r 375 (564)
...+|+++ ||+.. +..|+.++|+.+|+++.+ +... +.++++|+||+||| |+.
T Consensus 5 ~~~~i~ii-DyG~G--N~~sl~~al~~~G~~v~~------v~~~------------------~~l~~~D~lIlpG~-gs~ 56 (538)
T PLN02617 5 ADSEVTLL-DYGAG--NVRSVRNAIRHLGFTIKD------VQTP------------------EDILNADRLIFPGV-GAF 56 (538)
T ss_pred CCCeEEEE-ECCCC--CHHHHHHHHHHCCCeEEE------ECCh------------------hhhccCCEEEECCC-CCH
Confidence 35789999 89855 778999999999987633 3321 34688999999985 332
Q ss_pred ch-------hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhc--ccc--ccccCCcccccCCCCCCCeeeecCCCcccccC
Q 008476 376 GV-------QGKILAAKYAREHRIPYLGICLGMQVAVIEFA--RSV--LNLRDANSTEFDPNTKNPCVIFMPEGSKTHMG 444 (564)
Q Consensus 376 ~~-------eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g--~~v--lgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~G 444 (564)
+. .+....++.+.+.++|+||||+|||+|+.++. +.+ +++-+....++... ++...+|+|
T Consensus 57 ~~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~~~E~g~~~glg~l~G~v~~~~~~---------~~~~vp~iG 127 (538)
T PLN02617 57 GSAMDVLNNRGMAEALREYIQNDRPFLGICLGLQLLFESSEENGPVEGLGVIPGVVGRFDSS---------NGLRVPHIG 127 (538)
T ss_pred HHHHHHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhhhhhcCCccCcccccceEEECCcc---------CCCCCCeec
Confidence 21 24567788888899999999999999987641 112 22222222222100 012457888
Q ss_pred CceeecceeeEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCC-CCeEEEEEeCCCCcEEEEc
Q 008476 445 GTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET-SQRMEIVELPNHPYFIGVQ 523 (564)
Q Consensus 445 gtmrlG~~~v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~d-g~~vE~ie~~~~pffiGvQ 523 (564)
|+ ++...++++++..+ + .. ..+|.|+|.+.+.. ..+..+.+.+.. ++.+++++.. +++|+|
T Consensus 128 w~------~V~~~~~spL~~~l-~-~~--~vy~vHSy~v~~~p-----~~~~~v~a~~~~g~~~IaAI~~g---nI~GVQ 189 (538)
T PLN02617 128 WN------ALQITKDSELLDGV-G-GR--HVYFVHSYRATPSD-----ENKDWVLATCNYGGEFIASVRKG---NVHAVQ 189 (538)
T ss_pred ce------EEEecCCChhHhcC-C-Cc--EEEEEeEEEEEecC-----CCCcEEEEEEccCCCcEEEEEeC---CEEEEE
Confidence 84 33334443444444 2 22 35678999864311 123334444443 2358999864 378999
Q ss_pred ccCCCcCCCCCchHHHHHHHHHHhc
Q 008476 524 FHPEYKSRPGKPSPLFLGNISHLYF 548 (564)
Q Consensus 524 FHPE~ss~p~~p~pLF~~Fv~aa~~ 548 (564)
||||++.. ....+|++|++....
T Consensus 190 FHPE~s~~--~G~~L~~nFl~~~~~ 212 (538)
T PLN02617 190 FHPEKSGA--TGLSILRRFLEPKSS 212 (538)
T ss_pred cCCccCch--hHHHHHHHHHHhhhh
Confidence 99999862 346899999987653
No 68
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.76 E-value=9.7e-18 Score=163.73 Aligned_cols=185 Identities=20% Similarity=0.214 Sum_probs=109.5
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCch--
Q 008476 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 377 (564)
Q Consensus 300 IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~-- 377 (564)
|+|+ ||+.. +-.++.++|+..|+++.+ +..+ +.++++|+|++|| +|++..
T Consensus 1 ~~~~-~~~~g--n~~~l~~~l~~~g~~v~v------~~~~------------------~~l~~~d~lii~G-~~~~~~~~ 52 (196)
T TIGR01855 1 IVII-DYGVG--NLGSVKRALKRVGAEPVV------VKDS------------------KEAELADKLILPG-VGAFGAAM 52 (196)
T ss_pred CEEE-ecCCc--HHHHHHHHHHHCCCcEEE------EcCH------------------HHhccCCEEEECC-CCCHHHHH
Confidence 5788 88754 677999999999988755 2211 3467899999988 344321
Q ss_pred ---hHH-HHHH-HHHHHcCCCEEEEehhHHHHHHHh--cccc--ccccCCcccccCCCCCCCeeeecCCCcccccCCcee
Q 008476 378 ---QGK-ILAA-KYAREHRIPYLGICLGMQVAVIEF--ARSV--LNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMR 448 (564)
Q Consensus 378 ---eg~-i~~i-r~a~e~~iPiLGICLGmQll~ia~--g~~v--lgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~Ggtmr 448 (564)
... +..+ +.+.+.++|+||||+|||+|+.++ ++++ +|+-++.... ++....+++|++
T Consensus 53 ~~l~~~~~~~l~~~~~~~~~pvlGiC~G~Qll~~~~~~~~~~~glg~~~~~v~~------------~~~~~~~~~g~~-- 118 (196)
T TIGR01855 53 ARLRENGLDLFVELVVRLGKPVLGICLGMQLLFERSEEGGGVPGLGLIKGNVVK------------LEARKVPHMGWN-- 118 (196)
T ss_pred HHHHHcCcHHHHHHHHhCCCCEEEECHHHHHhhhccccCCCCCCcceeeEEEEE------------CCCCCCCcccCe--
Confidence 111 3344 667788999999999999998773 1111 1111111110 000012444543
Q ss_pred ecceeeEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCC
Q 008476 449 LGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEY 528 (564)
Q Consensus 449 lG~~~v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ 528 (564)
.+.....++++..+. .....+++|+|++.+.. +. .++.++++..+.+ .....+ ++|+|||||+
T Consensus 119 ----~~~~~~~~~l~~~l~---~~~~v~~~Hs~~v~~~~-------~~-~~a~~~~g~~~~~-~~~~~~-i~GvQFHPE~ 181 (196)
T TIGR01855 119 ----EVHPVKESPLLNGID---EGAYFYFVHSYYAVCEE-------EA-VLAYADYGEKFPA-AVQKGN-IFGTQFHPEK 181 (196)
T ss_pred ----eeeeCCCChHHhCCC---CCCEEEEECeeEecCCC-------Cc-EEEEEcCCcEEEE-EEecCC-EEEEECCCcc
Confidence 222222323444433 12346788999885421 22 4555556653333 444555 6799999998
Q ss_pred cCCCCCchHHHHHHHHH
Q 008476 529 KSRPGKPSPLFLGNISH 545 (564)
Q Consensus 529 ss~p~~p~pLF~~Fv~a 545 (564)
+. .....++++|+++
T Consensus 182 ~~--~~g~~ll~~f~~~ 196 (196)
T TIGR01855 182 SG--KTGLKLLENFLEL 196 (196)
T ss_pred Cc--HhHHHHHHHHHhC
Confidence 74 3467899999863
No 69
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.76 E-value=1.4e-17 Score=167.17 Aligned_cols=171 Identities=20% Similarity=0.194 Sum_probs=113.1
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCC---
Q 008476 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR--- 375 (564)
Q Consensus 299 ~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r--- 375 (564)
+|.++ ...... .-.++.++|+..|..+.+. .....+... ..+.++|||||+||+...
T Consensus 4 ~ilvi-qh~~~e-~~g~i~~~L~~~g~~~~v~----~~~~~~~~~--------------~~~~~~d~lii~Ggp~~~~d~ 63 (234)
T PRK07053 4 TAVAI-RHVAFE-DLGSFEQVLGARGYRVRYV----DVGVDDLET--------------LDALEPDLLVVLGGPIGVYDD 63 (234)
T ss_pred eEEEE-ECCCCC-CChHHHHHHHHCCCeEEEE----ecCCCccCC--------------CCccCCCEEEECCCCCCCCCC
Confidence 57777 444332 4568999999999876541 111121100 235689999999997542
Q ss_pred ----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecc
Q 008476 376 ----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGS 451 (564)
Q Consensus 376 ----~~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~ 451 (564)
.....++.++.+.+.++|+||||+|||+|+.++|++|..- ....+|.
T Consensus 64 ~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~-----------------------------~~~e~G~ 114 (234)
T PRK07053 64 ELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARALGARVYPG-----------------------------GQKEIGW 114 (234)
T ss_pred CcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHHcCCcEecC-----------------------------CCCeEeE
Confidence 2356778899999999999999999999999999998320 0122344
Q ss_pred eeeEeecC--CchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCc
Q 008476 452 RRTYFQIK--DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYK 529 (564)
Q Consensus 452 ~~v~l~~~--~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~s 529 (564)
.++.+.+. ...+..+. ..+...|.|+..+. + +.|...+|.++... ++++...++ ++|+|||||++
T Consensus 115 ~~i~~t~~g~~~pl~~~~---~~~~~~~~H~d~~~------l-P~ga~~La~s~~~~-~qaf~~g~~--~~g~QfHpE~~ 181 (234)
T PRK07053 115 APLTLTDAGRASPLRHLG---AGTPVLHWHGDTFD------L-PEGATLLASTPACR-HQAFAWGNH--VLALQFHPEAR 181 (234)
T ss_pred EEEEEeccccCChhhcCC---CcceEEEEeCCEEe------c-CCCCEEEEcCCCCC-eeEEEeCCC--EEEEeeCccCC
Confidence 55554432 01122222 22345677766552 3 67889999887765 899998643 77999999997
Q ss_pred CC
Q 008476 530 SR 531 (564)
Q Consensus 530 s~ 531 (564)
+.
T Consensus 182 ~~ 183 (234)
T PRK07053 182 ED 183 (234)
T ss_pred HH
Confidence 54
No 70
>PRK05665 amidotransferase; Provisional
Probab=99.76 E-value=2.5e-17 Score=165.87 Aligned_cols=134 Identities=16% Similarity=0.152 Sum_probs=91.8
Q ss_pred hccCCCEEEeCCCCCCC-----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeee
Q 008476 359 LLKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVI 433 (564)
Q Consensus 359 ~L~~~DGIllpGGfG~r-----~~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~ 433 (564)
.+.++|||||+||+.+. .+....+.++.+.++++|+||||+|||+|+.++|++|..-+
T Consensus 54 ~~~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~----------------- 116 (240)
T PRK05665 54 DDEKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERAS----------------- 116 (240)
T ss_pred CcccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCC-----------------
Confidence 45789999999997663 23556778888888999999999999999999999984311
Q ss_pred ecCCCcccccCCceeecceeeEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEe
Q 008476 434 FMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVEL 513 (564)
Q Consensus 434 ~m~e~~~~~~GgtmrlG~~~v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~ 513 (564)
.|+ ..|.+.+.+.+...++.... ..+...+.|+-. +..| +.|+..+|.++.+. +++++.
T Consensus 117 ---------~G~--e~G~~~~~~~~~~~~~~~~~---~~~~~~~~H~D~-----V~~L-P~ga~~La~s~~~~-~q~~~~ 175 (240)
T PRK05665 117 ---------QGW--GVGIHRYQLAAHAPWMSPAV---TELTLLISHQDQ-----VTAL-PEGATVIASSDFCP-FAAYHI 175 (240)
T ss_pred ---------CCc--ccceEEEEecCCCccccCCC---CceEEEEEcCCe-----eeeC-CCCcEEEEeCCCCc-EEEEEe
Confidence 122 12233444433212222221 223344556543 3345 67899999887765 999998
Q ss_pred CCCCcEEEEcccCCCcCCC
Q 008476 514 PNHPYFIGVQFHPEYKSRP 532 (564)
Q Consensus 514 ~~~pffiGvQFHPE~ss~p 532 (564)
.++ ++|+|||||++...
T Consensus 176 ~~~--~~g~QfHPE~~~~~ 192 (240)
T PRK05665 176 GDQ--VLCFQGHPEFVHDY 192 (240)
T ss_pred CCC--EEEEecCCcCcHHH
Confidence 764 77999999998753
No 71
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.75 E-value=2.8e-17 Score=164.13 Aligned_cols=193 Identities=23% Similarity=0.340 Sum_probs=121.3
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-
Q 008476 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 376 (564)
Q Consensus 298 ~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~- 376 (564)
+||+|+ +|.... .-.++.++|+.+|+.+.. .|... ..++++|+|+||||+....
T Consensus 1 ~~v~Vl-~~~G~n-~~~~~~~al~~~G~~~~~----i~~~~-------------------~~l~~~d~lilpGG~~~~d~ 55 (227)
T TIGR01737 1 MKVAVI-RFPGTN-CDRDTVYALRLLGVDAEI----VWYED-------------------GSLPDYDGVVLPGGFSYGDY 55 (227)
T ss_pred CeEEEE-eCCCcC-cHHHHHHHHHHCCCeEEE----EecCC-------------------CCCCCCCEEEECCCCccccc
Confidence 479999 775331 346788999999988744 23321 1256899999999974311
Q ss_pred --------hhHHHHHHHHHHHcCCCEEEEehhHHHHHHH--hccccccccCCcccccCCCCCCCeeeecCCCcccccCCc
Q 008476 377 --------VQGKILAAKYAREHRIPYLGICLGMQVAVIE--FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 446 (564)
Q Consensus 377 --------~eg~i~~ir~a~e~~iPiLGICLGmQll~ia--~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~Ggt 446 (564)
.....+.++.+.++++|++|||.|+|+|+.+ +++.+. ...+.+|
T Consensus 56 ~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~l~---~n~~~~~----------------------- 109 (227)
T TIGR01737 56 LRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGALL---PNDSLRF----------------------- 109 (227)
T ss_pred ccccchhcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCcee---ecCCCce-----------------------
Confidence 1335677888888999999999999999764 333221 0011111
Q ss_pred eeecceee--EeecCCchhhhccCCceeEee--ee-ceeeeeChhhhhhhccCCeEEEEE-----------eCCCC--eE
Q 008476 447 MRLGSRRT--YFQIKDCKSAKLYGNRTFIDE--RH-RHRYEVNPDMIARLENAGLSFTGK-----------DETSQ--RM 508 (564)
Q Consensus 447 mrlG~~~v--~l~~~~s~~~~iyg~~~~I~e--rh-~HrYeVn~~~v~~l~~~gl~~~a~-----------s~dg~--~v 508 (564)
+...+ ++....+.+.+-+.....+.. .| .|||.++++.+++|++.+..+... +++|. .+
T Consensus 110 ---~~~~~~~~v~~~~~~~~~~~~~g~~~~~pi~H~eG~y~~~~~~l~~l~~~~~i~~~y~d~~g~~~~~~npngs~~~i 186 (227)
T TIGR01737 110 ---ICRWVYLRVENADTIFTKNYKKGEVIRIPIAHGEGRYYADDETLARLESNDQVVFRYCDEDGDVAEEANPNGSVGNI 186 (227)
T ss_pred ---EEEeEEEEECCCCChhhccCCCCCEEEEEeEcCCcCeEcCHHHHHHHHHCCcEEEEEECCCCCCCCCCCCCCCHHHH
Confidence 11111 222221223222221122222 34 469999999888887777644332 35552 48
Q ss_pred EEEEeCCCCcEEEEcccCCCcC----CCCCchHHHHHHHHH
Q 008476 509 EIVELPNHPYFIGVQFHPEYKS----RPGKPSPLFLGNISH 545 (564)
Q Consensus 509 E~ie~~~~pffiGvQFHPE~ss----~p~~p~pLF~~Fv~a 545 (564)
+++.+++.+. +|+|||||... .+.+...+|++|++.
T Consensus 187 ~~i~~~~~~~-~g~~~HpE~~~~~~~~~~~g~~~~~~~~~~ 226 (227)
T TIGR01737 187 AGIVNERGNV-LGMMPHPERASEKLLGGDDGLKLFESLVEW 226 (227)
T ss_pred cccCCCCCCE-EEEecCchhhcccccCCcccHHHHHHHHhh
Confidence 8999999985 59999999984 234568999999853
No 72
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.74 E-value=3.3e-17 Score=165.23 Aligned_cols=132 Identities=20% Similarity=0.209 Sum_probs=89.7
Q ss_pred hccCCCEEEeCCCCCCCch------h-------HHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCC
Q 008476 359 LLKGADGILVPGGFGNRGV------Q-------GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDP 425 (564)
Q Consensus 359 ~L~~~DGIllpGGfG~r~~------e-------g~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~ 425 (564)
.++++|||||+||+++... . ....+++.+.++++|+||||+|||+|+.++|++|.. . .
T Consensus 48 ~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~-~--~------ 118 (242)
T PRK07567 48 DLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDR-T--Y------ 118 (242)
T ss_pred CHhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEec-C--C------
Confidence 4678899999999865421 1 123456677789999999999999999999998843 1 0
Q ss_pred CCCCCeeeecCCCcccccCCceeecceeeEeecC---CchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEe
Q 008476 426 NTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIK---DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKD 502 (564)
Q Consensus 426 ~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l~~~---~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s 502 (564)
| ..+|.+++.+.+. +.++..+. ..+...|.|++.| ..+ +.++.++|.+
T Consensus 119 ------------------g--~e~G~~~v~l~~~g~~~~l~~~~~---~~~~~~~~H~d~V-----~~l-p~~~~vlA~s 169 (242)
T PRK07567 119 ------------------G--EPVGAVTVSLTDAGRADPLLAGLP---DTFTAFVGHKEAV-----SAL-PPGAVLLATS 169 (242)
T ss_pred ------------------C--CcCccEEEEECCccCCChhhcCCC---CceEEEeehhhhh-----hhC-CCCCEEEEeC
Confidence 1 1123455555432 12232222 2234556676554 334 6799999998
Q ss_pred CCCCeEEEEEeCCCCcEEEEcccCCCcCC
Q 008476 503 ETSQRMEIVELPNHPYFIGVQFHPEYKSR 531 (564)
Q Consensus 503 ~dg~~vE~ie~~~~pffiGvQFHPE~ss~ 531 (564)
+++. ++++++.++ ++|+|||||++..
T Consensus 170 ~~~~-vqa~~~~~~--~~gvQfHPE~~~~ 195 (242)
T PRK07567 170 PTCP-VQMFRVGEN--VYATQFHPELDAD 195 (242)
T ss_pred CCCC-EEEEEeCCC--EEEEEeCCcCCHH
Confidence 7765 999998764 6799999999754
No 73
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.72 E-value=9e-17 Score=155.73 Aligned_cols=176 Identities=20% Similarity=0.265 Sum_probs=107.1
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCC--c
Q 008476 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR--G 376 (564)
Q Consensus 299 ~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r--~ 376 (564)
||+|+. ++.+|.|..++|+++|+++.+ ++.. +.++++|+|+||||++.. .
T Consensus 1 ~igvl~----~qg~~~e~~~~l~~~g~~~~~------v~~~------------------~~l~~~d~liipGG~~~~~~~ 52 (184)
T TIGR03800 1 KIGVLA----LQGAVREHARALEALGVEGVE------VKRP------------------EQLDEIDGLIIPGGESTTLSR 52 (184)
T ss_pred CEEEEE----ccCCHHHHHHHHHHCCCEEEE------ECCh------------------HHhccCCEEEECCCCHHHHHH
Confidence 477774 444889999999999987644 3321 347789999999997653 1
Q ss_pred ---hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccc---cccccCCcccccCCCCCCCeeeecCCCcccccCCceeec
Q 008476 377 ---VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARS---VLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLG 450 (564)
Q Consensus 377 ---~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~---vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG 450 (564)
..+....++.+.++++|+||||+|||+|+-++... .+|+-++.... ...|+ ..+
T Consensus 53 l~~~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~~~~~~~~~lg~~~~~v~~------------------~~~g~--~~~ 112 (184)
T TIGR03800 53 LLDKYGMFEPLRNFILSGLPVFGTCAGLIMLAKEIIGQKEGYLGLLDMTVER------------------NAYGR--QVD 112 (184)
T ss_pred HHHhccHHHHHHHHHHcCCcEEEECHHHHHHHhhhccCCCCccCcEEEEEEe------------------eccCC--ccc
Confidence 13456778888899999999999999998776221 01111110000 01111 112
Q ss_pred ceeeEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcC
Q 008476 451 SRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKS 530 (564)
Q Consensus 451 ~~~v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss 530 (564)
...+.+... .+ + ......-..|. +++..+ +.++.++|.+.+ . +++++.. + ++|+|||||.+.
T Consensus 113 s~~~~l~~~-----~~-~-~~~~~~~~~h~-----~~v~~l-p~~~~vla~~~~-~-~~a~~~~--~-~~gvQfHPE~~~ 174 (184)
T TIGR03800 113 SFEAEVDIK-----GV-G-DDPITGVFIRA-----PKIVSV-GNGVEILAKVGN-R-IVAVRQG--N-ILVSSFHPELTD 174 (184)
T ss_pred cEEEEeecc-----cC-C-CCcceEEEEcC-----CCcccC-CCCeEEEEEeCC-e-eEEEEeC--C-EEEEEeCCccCC
Confidence 222222211 01 0 00011112232 455555 779999999654 3 7788644 3 789999999974
Q ss_pred CCCCchHHHHHHHH
Q 008476 531 RPGKPSPLFLGNIS 544 (564)
Q Consensus 531 ~p~~p~pLF~~Fv~ 544 (564)
. ..+|+.|++
T Consensus 175 ~----~~~~~~f~~ 184 (184)
T TIGR03800 175 D----HRVHEYFLE 184 (184)
T ss_pred C----chHHHHhhC
Confidence 3 478888873
No 74
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=2.1e-16 Score=168.64 Aligned_cols=196 Identities=21% Similarity=0.219 Sum_probs=123.9
Q ss_pred CceEEEEEeccCCCcchHH-HHHHHHHHcC-CcceeeeEEEEecCCCcccccccCCchhhhHHHHhcc---CCCEEEeCC
Q 008476 296 EPVRIAMVGKYTGLSDAYL-SILKALLHAS-VDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK---GADGILVPG 370 (564)
Q Consensus 296 ~~~~IavVGkY~~~~Day~-SIi~aL~~aG-~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~---~~DGIllpG 370 (564)
.++++.+++.|. +|. ++.++|..+. ....+.|...|+.+ ++|+.+. -+|+|+|.+
T Consensus 13 ~rl~~LlID~YD----SyTfNiy~ll~~~~~vp~V~~vh~~~~~~----------------d~~~~l~q~~~FDaIVVgP 72 (767)
T KOG1224|consen 13 PRLRTLLIDNYD----SYTFNIYQLLSTINGVPPVVIVHDEWTWE----------------DAYHYLYQDVAFDAIVVGP 72 (767)
T ss_pred hheeEEEEeccc----chhhhHHHHHHHhcCCCcEEEEeccccCH----------------HHHHHHhhccccceEEecC
Confidence 458999998886 666 8899998764 44333333444332 2344444 499999999
Q ss_pred CCCCCchhHHHHHHHHHHH--cCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCcee
Q 008476 371 GFGNRGVQGKILAAKYARE--HRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMR 448 (564)
Q Consensus 371 GfG~r~~eg~i~~ir~a~e--~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~Ggtmr 448 (564)
|||.|.-..-+..+....+ +.+|+||||||||.|+++.|+.|.. .+ + +..|.
T Consensus 73 GPG~P~~a~d~gI~~rl~~~~~~iPilGICLGfQal~l~hGA~v~~--------~n--~-------------p~HGr--- 126 (767)
T KOG1224|consen 73 GPGSPMCAADIGICLRLLLECRDIPILGICLGFQALGLVHGAHVVH--------AN--E-------------PVHGR--- 126 (767)
T ss_pred CCCCCCcHHHHHHHHHHHHhcCCCceeeeehhhHhHhhhcccceec--------CC--C-------------cccce---
Confidence 9999943333333333333 2599999999999999999988731 11 0 11111
Q ss_pred ecceeeEeecCCchhhhccCC---ceeEeeeeceeeeeChhhhhhhccCCeEEEEEeC--CCCeEEEEEeCCCCcEEEEc
Q 008476 449 LGSRRTYFQIKDCKSAKLYGN---RTFIDERHRHRYEVNPDMIARLENAGLSFTGKDE--TSQRMEIVELPNHPYFIGVQ 523 (564)
Q Consensus 449 lG~~~v~l~~~~s~~~~iyg~---~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~--dg~~vE~ie~~~~pffiGvQ 523 (564)
-+.+..... -++.++..+ .... .|+ |+..+|+.-++.| .+.+... +|-.++.+.+++.||| |+|
T Consensus 127 --vs~i~~~~~-~~f~gi~sg~~~~fK~-~RY-HSL~in~~pid~l-----~il~t~~ddng~ilMsi~~~~fPhf-G~q 195 (767)
T KOG1224|consen 127 --VSGIEHDGN-ILFSGIPSGRNSDFKV-VRY-HSLIINSLPIDLL-----PILWTIYDDNGHILMSIMHSSFPHF-GLQ 195 (767)
T ss_pred --eeeEEecCc-EEEccCCCCCccccee-EEe-EEEEecCCchhhh-----cceeEeecCCceEEEEeeccCCCcc-cee
Confidence 011111111 222233311 2222 455 8888887655543 3444444 4448999999999998 999
Q ss_pred ccCCCcCCCCCchHHHHHHHHHHhcc
Q 008476 524 FHPEYKSRPGKPSPLFLGNISHLYFV 549 (564)
Q Consensus 524 FHPE~ss~p~~p~pLF~~Fv~aa~~~ 549 (564)
||||.-.... ...||++|++.+..+
T Consensus 196 yHPES~~s~~-g~~lfkNFl~lt~~~ 220 (767)
T KOG1224|consen 196 YHPESIASTY-GSQLFKNFLDLTVNY 220 (767)
T ss_pred eChHHhhhhh-hHHHHHHHHHhhccC
Confidence 9999876543 579999999988664
No 75
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.69 E-value=3.8e-16 Score=145.72 Aligned_cols=193 Identities=19% Similarity=0.262 Sum_probs=126.3
Q ss_pred EEEEEeccCCCcchHHHHHHHH-HHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCch
Q 008476 299 RIAMVGKYTGLSDAYLSILKAL-LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (564)
Q Consensus 299 ~IavVGkY~~~~Day~SIi~aL-~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~ 377 (564)
.|.+++.|.++. .++.+.| -..|+.+.| ..-+++.-++ -...+++++++++|||.|..
T Consensus 20 piv~IDNYDSFT---~Nv~qYL~~e~g~~~~V------yRNDeiTV~E------------l~~~NP~~LliSPGPG~P~D 78 (223)
T KOG0026|consen 20 PIIVIDNYDSFT---YNLCQYLMGELGCHFEV------YRNDELTVEE------------LKRKNPRGLLISPGPGTPQD 78 (223)
T ss_pred CEEEEecccchh---HHHHHHhhhccCccEEE------EecCcccHHH------------HhhcCCCeEEecCCCCCCcc
Confidence 588898998552 3788888 455666544 2223332211 12358999999999999985
Q ss_pred hHH-HHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeEe
Q 008476 378 QGK-ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 456 (564)
Q Consensus 378 eg~-i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l 456 (564)
.|. .++++++ .-++|+||||+|.|+|.-+||+++.- ..|. ++ | |.+ .++..
T Consensus 79 sGIs~~~i~~f-~~~iP~fGvCMGlQCi~e~fGGkv~~------a~~~------i~---------H-GK~-----S~i~~ 130 (223)
T KOG0026|consen 79 SGISLQTVLEL-GPLVPLFGVCMGLQCIGEAFGGKIVR------SPFG------VM---------H-GKS-----SMVHY 130 (223)
T ss_pred ccchHHHHHHh-CCCCceeeeehhhhhhhhhhCcEEec------cCcc------ee---------e-ccc-----ccccc
Confidence 553 3556555 35799999999999999999999832 1121 01 0 111 11110
Q ss_pred ec-C-CchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCC
Q 008476 457 QI-K-DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGK 534 (564)
Q Consensus 457 ~~-~-~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~ 534 (564)
.. + ..+++.+. +..+.+|+ |+.+...+.++ ...++++|+.+||- +++.+|+.+..+-|||||||.--...
T Consensus 131 D~~~~~G~f~g~~--q~~~V~RY-HSLa~~~sSlP---~d~L~VTawTEnG~-iMgaRHkKY~~ieGVQfHPESIltee- 202 (223)
T KOG0026|consen 131 DEKGEEGLFSGLS--NPFIVGRY-HSLVIEKDSFP---SDELEVTAWTEDGL-VMAARHRKYKHIQGVQFHPESIITTE- 202 (223)
T ss_pred CCccccccccCCC--CCeEEEee-eeeeeecccCC---ccceeeeEeccCcE-EEeeeccccccccceeecchhhhhhh-
Confidence 00 0 01233333 23344666 77776655443 46799999999986 99999999988889999999875543
Q ss_pred chHHHHHHHHHHhc
Q 008476 535 PSPLFLGNISHLYF 548 (564)
Q Consensus 535 p~pLF~~Fv~aa~~ 548 (564)
.+-+.++|++...+
T Consensus 203 Gk~~irNflni~~~ 216 (223)
T KOG0026|consen 203 GKTIVRNFIKIVEK 216 (223)
T ss_pred hHHHHHHHHHhccc
Confidence 57788999987654
No 76
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.67 E-value=1.6e-15 Score=152.37 Aligned_cols=130 Identities=18% Similarity=0.173 Sum_probs=88.6
Q ss_pred hccCCCEEEeCCCCCCCc--------h--hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCC
Q 008476 359 LLKGADGILVPGGFGNRG--------V--QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTK 428 (564)
Q Consensus 359 ~L~~~DGIllpGGfG~r~--------~--eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~ 428 (564)
.+.++|||||+||+.... . ....+.++.+.++++|+||||+|+|+|+.++|++|..-+
T Consensus 42 ~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~------------ 109 (235)
T PRK08250 42 NADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEALGAKYEHSP------------ 109 (235)
T ss_pred CccccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhCceeccCC------------
Confidence 356899999999986532 1 244677888889999999999999999999999984211
Q ss_pred CCeeeecCCCcccccCCceeecceeeEeecC---CchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCC
Q 008476 429 NPCVIFMPEGSKTHMGGTMRLGSRRTYFQIK---DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETS 505 (564)
Q Consensus 429 ~~vi~~m~e~~~~~~GgtmrlG~~~v~l~~~---~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg 505 (564)
... +|.+++.+.+. +.++..+- ++.. ..|.|+..+ .+ +.|+..+|.++..
T Consensus 110 -----------~~e------~G~~~v~lt~~g~~d~l~~~~~-~~~~--v~~~H~d~~------~l-P~~a~~LA~s~~~ 162 (235)
T PRK08250 110 -----------EKE------IGYFPITLTEAGLKDPLLSHFG-STLT--VGHWHNDMP------GL-TDQAKVLATSEGC 162 (235)
T ss_pred -----------CCc------eeEEEEEEccccccCchhhcCC-CCcE--EEEEeccee------cC-CCCCEEEECCCCC
Confidence 011 23445554432 11232222 2333 445565432 23 6789999988666
Q ss_pred CeEEEEEeCCCCcEEEEcccCCCcC
Q 008476 506 QRMEIVELPNHPYFIGVQFHPEYKS 530 (564)
Q Consensus 506 ~~vE~ie~~~~pffiGvQFHPE~ss 530 (564)
. ++++...++ ++|+|||||++.
T Consensus 163 ~-~qa~~~~~~--~~g~QfHPE~~~ 184 (235)
T PRK08250 163 P-RQIVQYSNL--VYGFQCHMEFTV 184 (235)
T ss_pred C-ceEEEeCCC--EEEEeecCcCCH
Confidence 5 999998765 779999999975
No 77
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=99.59 E-value=7.2e-15 Score=150.31 Aligned_cols=191 Identities=21% Similarity=0.322 Sum_probs=121.2
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCC-C-CCCC--
Q 008476 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG-G-FGNR-- 375 (564)
Q Consensus 300 IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpG-G-fG~r-- 375 (564)
+-++ ||+.. +..|+.+||+|.|+++.. +.+ | .++.++|-+|+|| | ||..
T Consensus 4 v~~l-d~~ag--n~~si~nal~hlg~~i~~------v~~-----------P-------~DI~~a~rLIfPGVGnfg~~~D 56 (541)
T KOG0623|consen 4 VTLL-DYGAG--NVRSIRNALRHLGFSIKD------VQT-----------P-------GDILNADRLIFPGVGNFGPAMD 56 (541)
T ss_pred EEEE-ecCCc--cHHHHHHHHHhcCceeee------ccC-----------c-------hhhccCceEeecCcccchHHHH
Confidence 5567 88855 789999999999999754 222 1 3567889999999 3 4432
Q ss_pred --chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeec-----C-CCcccccCCce
Q 008476 376 --GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFM-----P-EGSKTHMGGTM 447 (564)
Q Consensus 376 --~~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m-----~-e~~~~~~Ggtm 447 (564)
.-.|+.+.++...++++|++|||+|+|+|. .+.+ |..+.+.-.+|..+ . +..++|+||+
T Consensus 57 ~L~~~Gf~eplr~YiesgkPfmgicvGlQaLF---~gSv---------E~p~skGLgvipg~v~RFD~s~k~VPhIGWN- 123 (541)
T KOG0623|consen 57 VLNRTGFAEPLRKYIESGKPFMGICVGLQALF---DGSV---------ENPPSKGLGVIPGIVGRFDASAKIVPHIGWN- 123 (541)
T ss_pred HHhhhhhHHHHHHHHhcCCCeEeehhhHHHHh---cccc---------cCCCcCcccccccceecccCCCCcCCccccc-
Confidence 126788889999999999999999999982 2322 22222111122111 1 2347999995
Q ss_pred eecceeeEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCC
Q 008476 448 RLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPE 527 (564)
Q Consensus 448 rlG~~~v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE 527 (564)
.|.+..+ +.+ ++....-..++.|+| +|++--..+++.++++. ....|. -+.|....+.++.++|||||
T Consensus 124 -----sc~v~sd-~ef---fg~~p~~~~YFVHSy-l~~ek~~~len~~wkia-t~kYG~-E~Fi~ai~knN~~AtQFHPE 191 (541)
T KOG0623|consen 124 -----SCQVGSD-SEF---FGDVPNRHVYFVHSY-LNREKPKSLENKDWKIA-TCKYGS-ESFISAIRKNNVHATQFHPE 191 (541)
T ss_pred -----ccccCCc-ccc---cccCCCceEEEEeee-cccccccCCCCCCceEe-eeccCc-HHHHHHHhcCceeeEecccc
Confidence 2333333 322 322222246788988 55554446777788764 344453 22333334455789999999
Q ss_pred CcCCCCCchHHHHHHHH
Q 008476 528 YKSRPGKPSPLFLGNIS 544 (564)
Q Consensus 528 ~ss~p~~p~pLF~~Fv~ 544 (564)
++...+ ....++|+.
T Consensus 192 KSG~aG--L~vl~~FL~ 206 (541)
T KOG0623|consen 192 KSGEAG--LSVLRRFLH 206 (541)
T ss_pred cccchh--HHHHHHHHh
Confidence 998764 677888887
No 78
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.59 E-value=9.5e-15 Score=141.23 Aligned_cols=167 Identities=19% Similarity=0.286 Sum_probs=98.7
Q ss_pred chHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-----hhHHHHHHH
Q 008476 311 DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-----VQGKILAAK 385 (564)
Q Consensus 311 Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~-----~eg~i~~ir 385 (564)
.++.+-.++|+..|+++.. ++.. +.+.++|||++|||+.... .....+.++
T Consensus 8 g~~~e~~~~l~~~g~~v~~------v~~~------------------~~l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~ 63 (183)
T cd01749 8 GDFREHIRALERLGVEVIE------VRTP------------------EDLEGIDGLIIPGGESTTIGKLLRRTGLLDPLR 63 (183)
T ss_pred CCcHHHHHHHHHCCCeEEE------ECCH------------------HHhccCCEEEECCchHHHHHHHHHhCCHHHHHH
Confidence 3566777999999987644 3321 3477899999999864311 134566788
Q ss_pred HHHHcCCCEEEEehhHHHHHHHhccc----cccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeEeecCCc
Q 008476 386 YAREHRIPYLGICLGMQVAVIEFARS----VLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDC 461 (564)
Q Consensus 386 ~a~e~~iPiLGICLGmQll~ia~g~~----vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l~~~~s 461 (564)
.+.++++|+||||+|||+|+.+++.. -+|+-+..... ...|+. .|.....+...
T Consensus 64 ~~~~~g~PvlGiC~G~qlL~~~~~~~~~~~glG~~~~~v~~------------------~~~g~~--~g~~~~~l~~~-- 121 (183)
T cd01749 64 EFIRAGKPVFGTCAGLILLAKEVEDQGGQPLLGLLDITVRR------------------NAFGRQ--VDSFEADLDIP-- 121 (183)
T ss_pred HHHHcCCeEEEECHHHHHHHHHhcccCCCCccCceeEEEEe------------------eccccc--cceEEEcCCCC--
Confidence 88889999999999999999998763 12221111000 011111 11111111110
Q ss_pred hhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHHHH
Q 008476 462 KSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLG 541 (564)
Q Consensus 462 ~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQFHPE~ss~p~~p~pLF~~ 541 (564)
.+ + .......+.|... +..+ +.+++++|.+. +. +++++.. + ++|+|||||++.. ..+|+.
T Consensus 122 ---~~-~-~~~~~~~~~h~~~-----v~~~-p~~~~~la~~~-~~-~~a~~~~--~-~~g~qfHPE~~~~----~~~~~~ 181 (183)
T cd01749 122 ---GL-G-LGPFPAVFIRAPV-----IEEV-GPGVEVLAEYD-GK-IVAVRQG--N-VLATSFHPELTDD----TRIHEY 181 (183)
T ss_pred ---cC-C-CCccEEEEEECcE-----EEEc-CCCcEEEEecC-CE-EEEEEEC--C-EEEEEcCCccCCC----cchhhh
Confidence 11 0 1112234445433 3333 56899999874 44 5677654 3 7899999999854 367777
Q ss_pred HH
Q 008476 542 NI 543 (564)
Q Consensus 542 Fv 543 (564)
|+
T Consensus 182 f~ 183 (183)
T cd01749 182 FL 183 (183)
T ss_pred hC
Confidence 64
No 79
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.49 E-value=3.1e-11 Score=132.15 Aligned_cols=89 Identities=21% Similarity=0.260 Sum_probs=65.8
Q ss_pred ceEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCc
Q 008476 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (564)
Q Consensus 297 ~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~ 376 (564)
.++|||+ ..-.+.-.|..-+++|+..|+++ .|++.-+ + +.+.++|+|++|||+....
T Consensus 245 ~~~iava-~d~af~f~y~e~~~~L~~~g~~~------~~~~~~~--~--------------~~l~~~D~lilpGG~~~~~ 301 (451)
T PRK01077 245 GVRIAVA-RDAAFNFYYPENLELLRAAGAEL------VFFSPLA--D--------------EALPDCDGLYLGGGYPELF 301 (451)
T ss_pred CceEEEE-ecCcccccHHHHHHHHHHCCCEE------EEeCCcC--C--------------CCCCCCCEEEeCCCchhhH
Confidence 4799999 55555546778889999888665 3454311 0 2356889999999974321
Q ss_pred ------hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 008476 377 ------VQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (564)
Q Consensus 377 ------~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~ 408 (564)
..+..+.++.+.++++|++|||-|+|+|+-.+
T Consensus 302 ~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 302 AAELAANTSMRASIRAAAAAGKPIYAECGGLMYLGESL 339 (451)
T ss_pred HHHHhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 14577889999999999999999999997664
No 80
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.46 E-value=2.4e-12 Score=131.26 Aligned_cols=213 Identities=21% Similarity=0.268 Sum_probs=124.9
Q ss_pred ceEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCC--C
Q 008476 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG--N 374 (564)
Q Consensus 297 ~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG--~ 374 (564)
++||||+ .+.... .-.+..++|+++|+.+.+ .|+. ++.+. ...++++|+|++||||+ +
T Consensus 3 ~~kvaVl-~~pG~n-~d~e~~~Al~~aG~~v~~----v~~~--~~~~~------------~~~l~~~DgLvipGGfs~gD 62 (261)
T PRK01175 3 SIRVAVL-RMEGTN-CEDETVKAFRRLGVEPEY----VHIN--DLAAE------------RKSVSDYDCLVIPGGFSAGD 62 (261)
T ss_pred CCEEEEE-eCCCCC-CHHHHHHHHHHCCCcEEE----Eeec--ccccc------------ccchhhCCEEEECCCCCccc
Confidence 4789999 563332 234778999999988643 2332 22110 02478899999999974 3
Q ss_pred Cc---------h-hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccC
Q 008476 375 RG---------V-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMG 444 (564)
Q Consensus 375 r~---------~-eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~G 444 (564)
.- . ..+.++++.+.++++|+||||+|+|+|+- .| ++ +. . .... . .+-+.++... .
T Consensus 63 ~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~-~G--lL--pg-~-~~~~-~--~~~~~L~~N~-----s 127 (261)
T PRK01175 63 YIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVE-LG--LL--PG-F-DEIA-E--KPEMALTVNE-----S 127 (261)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHH-CC--CC--CC-C-Cccc-c--CCcceEeecC-----C
Confidence 11 1 11236788888999999999999999964 22 22 11 0 0000 0 0111222111 0
Q ss_pred CceeecceeeE--eecCCchhhhccCCce-eEeeeece-eee-eChhhhhhhccCCeEEEEE------------eCCCCe
Q 008476 445 GTMRLGSRRTY--FQIKDCKSAKLYGNRT-FIDERHRH-RYE-VNPDMIARLENAGLSFTGK------------DETSQR 507 (564)
Q Consensus 445 gtmrlG~~~v~--l~~~~s~~~~iyg~~~-~I~erh~H-rYe-Vn~~~v~~l~~~gl~~~a~------------s~dg~~ 507 (564)
+ |+=.+.+. +....|.+-+-+.+.. .+...|.- ||. .+++.+++|+..+....-+ +++|..
T Consensus 128 ~--~f~~~~~~~~v~~~~s~~~~~~~~~~~~~piah~eG~~~~~~~~~l~~l~~~~~i~~~Y~d~~g~~~~~p~NPNGs~ 205 (261)
T PRK01175 128 N--RFECRPTYLKKENRKCIFTKLLKKDVFQVPVAHAEGRVVFSEEEILERLIENDQIVFRYVDENGNYAGYPWNPNGSI 205 (261)
T ss_pred C--CeEEeeeEEEECCCCChhHhccCCCEEEEeeEcCCcceEeCCHHHHHHHHHCCcEEEEEeCCCCCCCCCCCCCCCCh
Confidence 1 11111222 2222233333332121 22335543 455 5777778887887766544 566652
Q ss_pred --EEEEEeCCCCcEEEEcccCCCcCCCC------------CchHHHHHHHHHHh
Q 008476 508 --MEIVELPNHPYFIGVQFHPEYKSRPG------------KPSPLFLGNISHLY 547 (564)
Q Consensus 508 --vE~ie~~~~pffiGvQFHPE~ss~p~------------~p~pLF~~Fv~aa~ 547 (564)
|.+|-.++.. ++|...|||....|. +...+|+++++..+
T Consensus 206 ~~IAGi~~~~G~-vlglMpHPEr~~~~~~~~~~~~~~~~~~g~~~f~~~~~~~~ 258 (261)
T PRK01175 206 YNIAGITNEKGN-VIGLMPHPERAFYGYQHPYWEKEEDYGDGKIFFDSLINYLR 258 (261)
T ss_pred hhcceeECCCCC-EEEEcCCHHHhhchhhccccccccCCCchHHHHHHHHHHHH
Confidence 8888888887 569999999998877 77899999987554
No 81
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.43 E-value=1.7e-12 Score=125.10 Aligned_cols=81 Identities=12% Similarity=0.187 Sum_probs=61.0
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-
Q 008476 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 376 (564)
Q Consensus 298 ~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~- 376 (564)
+||+|+.=+| +.....++|++.|+++.+ +.. | +.++++|+|++|||++...
T Consensus 3 ~~igVLalqG----~~~Eh~~al~~lG~~v~~------v~~-----------~-------~~l~~~D~LILPGG~~t~~~ 54 (179)
T PRK13526 3 QKVGVLAIQG----GYQKHADMFKSLGVEVKL------VKF-----------N-------NDFDSIDRLVIPGGESTTLL 54 (179)
T ss_pred cEEEEEECCc----cHHHHHHHHHHcCCcEEE------ECC-----------H-------HHHhCCCEEEECCChHHHHH
Confidence 6899996444 777789999999987533 221 1 4578999999999976641
Q ss_pred ----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 008476 377 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (564)
Q Consensus 377 ----~eg~i~~ir~a~e~~iPiLGICLGmQll~ia 407 (564)
..+..+.++...+ ++|++|||.|||+|+-.
T Consensus 55 ~ll~~~~l~~~Ik~~~~-~kpilGICaG~qlL~~~ 88 (179)
T PRK13526 55 NLLNKHQIFDKLYNFCS-SKPVFGTCAGSIILSKG 88 (179)
T ss_pred HHhhhcCcHHHHHHHHc-CCcEEEEcHHHHHHHcc
Confidence 1356778887665 67999999999999643
No 82
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.41 E-value=7.7e-13 Score=139.81 Aligned_cols=136 Identities=23% Similarity=0.304 Sum_probs=91.8
Q ss_pred cCCCEEEeCCCCCCC------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeee
Q 008476 361 KGADGILVPGGFGNR------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIF 434 (564)
Q Consensus 361 ~~~DGIllpGGfG~r------~~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~ 434 (564)
.++-|||++|||-+- .+...+ .+-++|+||||.|||+|+-.+|+.|.+ ....|
T Consensus 58 ~~~rgiIiSGGP~SVya~dAP~~dp~i------f~~~vpvLGICYGmQ~i~~~~Gg~V~~---~~~RE------------ 116 (552)
T KOG1622|consen 58 YGPRGIIISGGPNSVYAEDAPSFDPAI------FELGVPVLGICYGMQLINKLNGGTVVK---GMVRE------------ 116 (552)
T ss_pred CCceEEEEeCCCCccccCcCCCCChhH------hccCCcceeehhHHHHHHHHhCCcccc---ccccC------------
Confidence 588999999998652 222222 344799999999999999999998843 01111
Q ss_pred cCCCcccccCCceeecceeeEeecCCchhhhccCCcee--EeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEE
Q 008476 435 MPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTF--IDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVE 512 (564)
Q Consensus 435 m~e~~~~~~GgtmrlG~~~v~l~~~~s~~~~iyg~~~~--I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie 512 (564)
.|...+...+...++.++.+ ... +...|- +.+.++ ..|+++.|++.+.. +.++.
T Consensus 117 --------------~G~~eI~v~~~~~lF~~~~~-~~~~~VlltHg-------dsl~~v-~~g~kv~a~s~n~~-va~i~ 172 (552)
T KOG1622|consen 117 --------------DGEDEIEVDDSVDLFSGLHK-TEFMTVLLTHG-------DSLSKV-PEGFKVVAFSGNKP-VAGIL 172 (552)
T ss_pred --------------CCCceEEcCchhhhhhhhcc-cceeeeeeccc-------cchhhc-cccceeEEeecCcc-eeeeh
Confidence 12223333222123444442 222 444443 556665 67899999986654 88888
Q ss_pred eCCCCcEEEEcccCCCcCCCCCchHHHHHHH
Q 008476 513 LPNHPYFIGVQFHPEYKSRPGKPSPLFLGNI 543 (564)
Q Consensus 513 ~~~~pffiGvQFHPE~ss~p~~p~pLF~~Fv 543 (564)
...++ +||+|||||....|. ...++++|+
T Consensus 173 ~e~kk-iyglqfhpEV~~t~~-g~~ll~nFl 201 (552)
T KOG1622|consen 173 NELKK-IYGLQFHPEVTLTPN-GKELLKNFL 201 (552)
T ss_pred hhhhh-hhcCCCCCcccccCc-hhHHHHHHH
Confidence 88888 569999999998886 468999998
No 83
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.39 E-value=4e-11 Score=118.24 Aligned_cols=196 Identities=22% Similarity=0.342 Sum_probs=123.5
Q ss_pred ceEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhcc-CCCEEEeCCCCCCC
Q 008476 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK-GADGILVPGGFGNR 375 (564)
Q Consensus 297 ~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~-~~DGIllpGGfG~r 375 (564)
++||||+ .+-.. .+...+..|++++|.+... .|.... .+. ++|+|++||||..-
T Consensus 2 ~~kvaVi-~fpGt-N~d~d~~~A~~~aG~~~~~----V~~~d~-------------------~~~~~~d~vv~pGGFSyG 56 (231)
T COG0047 2 RPKVAVL-RFPGT-NCDYDMAAAFERAGFEAED----VWHSDL-------------------LLGRDFDGVVLPGGFSYG 56 (231)
T ss_pred CceEEEE-EcCCc-CchHHHHHHHHHcCCCceE----EEeeec-------------------ccCCCccEEEEcCCCCcc
Confidence 4799999 77533 3667888999999999743 454421 233 68999999997442
Q ss_pred -----c----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccCCc
Q 008476 376 -----G----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 446 (564)
Q Consensus 376 -----~----~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~Ggt 446 (564)
+ .+...+.++.+.+.++|+||||-|+|+|+ +.| + |+.+ |-.+..
T Consensus 57 DyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL~-e~g--L--lPGa----l~~N~s------------------ 109 (231)
T COG0047 57 DYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQILS-EAG--L--LPGA----LTRNES------------------ 109 (231)
T ss_pred cccCcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHHH-HcC--c--CCcc----eecCCC------------------
Confidence 2 24456667777788999999999999997 533 1 1111 111111
Q ss_pred eeecceee--EeecCCchhhhccCCce--eEeeee-ceeeeeChhhhhhhccCCeEEEEE-----------eCCCCe--E
Q 008476 447 MRLGSRRT--YFQIKDCKSAKLYGNRT--FIDERH-RHRYEVNPDMIARLENAGLSFTGK-----------DETSQR--M 508 (564)
Q Consensus 447 mrlG~~~v--~l~~~~s~~~~iyg~~~--~I~erh-~HrYeVn~~~v~~l~~~gl~~~a~-----------s~dg~~--v 508 (564)
.|+=.+.+ ++...+|.+-.-|.+.+ .|-..| --||.++.+.+++|+..|..+.-+ ++||.. +
T Consensus 110 ~~F~cr~v~l~V~~~~t~ft~~~~~g~~i~ipVAHgEGr~~~~~~~l~~l~~ngqvvfrY~d~~G~~~~~~NPNGS~~~I 189 (231)
T COG0047 110 LRFECRWVYLRVENNNTPFTSGYEGGEVIPIPVAHGEGRYYADDETLAELEENGQVVFRYVDNNGETEEYANPNGSVNGI 189 (231)
T ss_pred CceEEEEEEEEEecCCCHHHHhcCCCceEEEEEeecceeEEccHHHHHHHhhCCeEEEEEecCCCceeeeeCCCCChhhc
Confidence 11112222 23333355555553322 232333 456888877788887777655443 455653 7
Q ss_pred EEEEeCCCCcEEEEcccCCCcCCCCCc----hHHHHHHHHH
Q 008476 509 EIVELPNHPYFIGVQFHPEYKSRPGKP----SPLFLGNISH 545 (564)
Q Consensus 509 E~ie~~~~pffiGvQFHPE~ss~p~~p----~pLF~~Fv~a 545 (564)
.+|-.++.. ++|..-|||..++...+ ..||++.++.
T Consensus 190 aGI~n~~G~-V~gmMPHPERa~~~~~g~~Dg~~lF~s~~~~ 229 (231)
T COG0047 190 AGITNEDGN-VLGMMPHPERASESLLGGEDGLRLFRSARKY 229 (231)
T ss_pred eeEEcCCCC-EEEecCCchhhhhcccCCchHHHHHHHHHHh
Confidence 777777776 67999999998865433 5778777654
No 84
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.36 E-value=1.8e-11 Score=123.26 Aligned_cols=178 Identities=21% Similarity=0.257 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCc---------hhH-HH
Q 008476 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG---------VQG-KI 381 (564)
Q Consensus 312 ay~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~---------~eg-~i 381 (564)
.-.++..+|+.+|+.+.+ .|+.. .... ...++++|||+|||||.... ... ..
T Consensus 11 ~~~~~~~al~~aG~~v~~----v~~~~--~~~~------------~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~ 72 (238)
T cd01740 11 CDRDMAYAFELAGFEAED----VWHND--LLAG------------RKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLM 72 (238)
T ss_pred CHHHHHHHHHHcCCCEEE----EeccC--Cccc------------cCCHhhCCEEEECCCCCcccccccccccccChhHH
Confidence 566899999999988753 33322 1110 02467899999999975321 111 66
Q ss_pred HHHHHHHHcCCCEEEEehhHHHHHHH--hccccccccCCcccccCCCCCCCeeeecCCCcccccCCceeecceeeEeecC
Q 008476 382 LAAKYAREHRIPYLGICLGMQVAVIE--FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIK 459 (564)
Q Consensus 382 ~~ir~a~e~~iPiLGICLGmQll~ia--~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~GgtmrlG~~~v~l~~~ 459 (564)
+.++.+.++++|+||||.|+|+|+-+ +++.+.. ..+.++... ..+ +. ....+...
T Consensus 73 ~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~~~---~~~~~~~~~---------------~~~---~~--v~~~v~~~ 129 (238)
T cd01740 73 EEVKEFAERGGLVLGICNGFQILVELGLLPGALIR---NKGLKFICR---------------WQN---RF--VTLRVENN 129 (238)
T ss_pred HHHHHHHhCCCeEEEECcHHHHHHHcCCCcccccc---CCCCceecc---------------ccC---ce--EEEEEcCC
Confidence 78888889999999999999999754 3332211 011111100 000 00 01111111
Q ss_pred Cc-hhhhc-cCCceeEeeeece-eeeeChhhhhhhccCCeEEEEE-------------eCCCCe--EEEEEeCCCCcEEE
Q 008476 460 DC-KSAKL-YGNRTFIDERHRH-RYEVNPDMIARLENAGLSFTGK-------------DETSQR--MEIVELPNHPYFIG 521 (564)
Q Consensus 460 ~s-~~~~i-yg~~~~I~erh~H-rYeVn~~~v~~l~~~gl~~~a~-------------s~dg~~--vE~ie~~~~pffiG 521 (564)
.+ .+..+ -+....+...|.+ ||..+++.+.+|+..+... -+ +++|.. +.+|-.++.. ++|
T Consensus 130 ~si~t~~~~~g~~l~~~vaHgeG~~~~~~~~~~~l~~~~~i~-~y~~~~~~~~~~yp~NPnGs~~~iAgi~~~~Gr-vlg 207 (238)
T cd01740 130 DSPFTKGYMEGEVLRIPVAHGEGRFYADDETLAELEENGQIA-QYVDDDGNVTERYPANPNGSLDGIAGICNEDGR-VLG 207 (238)
T ss_pred CCceecCCCCCCEEEEEeECCceeeEcCHHHHHHHHHCCCEE-EEEcCCCCccccCCCCCCCChhcceEEEcCCCC-EEE
Confidence 12 22221 2223346677875 6777777777776666544 22 466653 8888888887 569
Q ss_pred EcccCCCcCCC
Q 008476 522 VQFHPEYKSRP 532 (564)
Q Consensus 522 vQFHPE~ss~p 532 (564)
...|||....|
T Consensus 208 lMphPer~~~~ 218 (238)
T cd01740 208 MMPHPERAVEP 218 (238)
T ss_pred EcCChHHcccc
Confidence 99999999887
No 85
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=99.36 E-value=4.1e-12 Score=122.58 Aligned_cols=137 Identities=23% Similarity=0.351 Sum_probs=91.2
Q ss_pred HhccCCCEEEeCCC----CCCCch-hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCee
Q 008476 358 KLLKGADGILVPGG----FGNRGV-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCV 432 (564)
Q Consensus 358 ~~L~~~DGIllpGG----fG~r~~-eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi 432 (564)
++|.++||++|+|. |++..| -.+...++.....++|++|||+|||+++.+.|++|-.
T Consensus 55 ~Dl~ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara~Gg~Vgr------------------ 116 (245)
T KOG3179|consen 55 EDLEKYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARAKGGKVGR------------------ 116 (245)
T ss_pred hhhhhhceEEEeCCcccccccchHHHHHHHHHHHHHhhccceEEEeccHHHHHHhhCCcccc------------------
Confidence 56888999999996 444433 4456667777778899999999999999999988721
Q ss_pred eecCCCcccccCCceeecceeeEeecCCchhhhccCC-ceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEE
Q 008476 433 IFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGN-RTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIV 511 (564)
Q Consensus 433 ~~m~e~~~~~~GgtmrlG~~~v~l~~~~s~~~~iyg~-~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~i 511 (564)
..+|-.|-+|+-.+. +.. ....+.+|. ...++-..-|+ +-+-.+ +.+.+..|.+++.+ +|++
T Consensus 117 --------a~KG~~~~lg~itiv-k~~-~~~~~yFG~~~~~l~IikcHq-----Devle~-PE~a~llasSe~ce-ve~f 179 (245)
T KOG3179|consen 117 --------APKGPDLGLGSITIV-KDA-EKPEKYFGEIPKSLNIIKCHQ-----DEVLEL-PEGAELLASSEKCE-VEMF 179 (245)
T ss_pred --------CCCCCcccccceEEE-Eec-ccchhhcccchhhhhHHhhcc-----cceecC-Cchhhhhccccccc-eEEE
Confidence 112433444443322 221 333445541 11222233343 222233 67888999998887 9999
Q ss_pred EeCCCCcEEEEcccCCCcCC
Q 008476 512 ELPNHPYFIGVQFHPEYKSR 531 (564)
Q Consensus 512 e~~~~pffiGvQFHPE~ss~ 531 (564)
...+| ++++|-|||++..
T Consensus 180 s~~~~--~l~fQGHPEyn~e 197 (245)
T KOG3179|consen 180 SIEDH--LLCFQGHPEYNKE 197 (245)
T ss_pred Eecce--EEEecCCchhhHH
Confidence 99998 6799999999875
No 86
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.33 E-value=4.5e-11 Score=124.05 Aligned_cols=196 Identities=16% Similarity=0.150 Sum_probs=113.3
Q ss_pred CceEEEEEeccCCCc-chHHHHHHHHHHcCCcceeeeEEEEecCCCccccccc-CC-chhhhHHHHh-ccCCCEEEeCCC
Q 008476 296 EPVRIAMVGKYTGLS-DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEK-EN-PDAYKAAWKL-LKGADGILVPGG 371 (564)
Q Consensus 296 ~~~~IavVGkY~~~~-Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~-~~-p~~y~~~~~~-L~~~DGIllpGG 371 (564)
+.++|||+ +-...+ ++=..+.+.|...... +++.|+....-...+.. +. ...|....+. -.++||+||+|.
T Consensus 34 rpl~i~il-NlMp~k~~TE~q~~rll~~~~~q----v~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGA 108 (302)
T PRK05368 34 RPLKILIL-NLMPKKIETETQFLRLLGNTPLQ----VDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITGA 108 (302)
T ss_pred CCccEEEE-eCCCCCchHHHHHHHHhcCCCce----EEEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcCC
Confidence 35899999 443222 3345677777443333 34445543332211100 00 1123333222 258999999998
Q ss_pred CCC-------CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccC
Q 008476 372 FGN-------RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMG 444 (564)
Q Consensus 372 fG~-------r~~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~G 444 (564)
+-. +-++...+.+++++++.+|+||||.|+|+++.++|+-. +.. . +..
T Consensus 109 p~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi~-k~~------~-----------------~~K- 163 (302)
T PRK05368 109 PVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGIP-KYT------L-----------------PEK- 163 (302)
T ss_pred CCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCCc-cCC------C-----------------CCc-
Confidence 744 11456788899999999999999999999999988731 100 0 000
Q ss_pred CceeecceeeEee-cCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEc
Q 008476 445 GTMRLGSRRTYFQ-IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQ 523 (564)
Q Consensus 445 gtmrlG~~~v~l~-~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQ 523 (564)
.+|-++..+. +.+.++..+- .....-|-|--+|+.+.+. ...|+.++|.|.... +.++..+++. ++++|
T Consensus 164 ---~~Gv~~~~~~~~~~pL~~g~~---d~F~~phSr~~~V~~~~i~--~~~~l~vLA~S~~~g-v~~~~~~~~r-~~~vQ 233 (302)
T PRK05368 164 ---LSGVFEHRVLDPHHPLLRGFD---DSFLVPHSRYTEVREEDIR--AATGLEILAESEEAG-VYLFASKDKR-EVFVT 233 (302)
T ss_pred ---eeEEEEEEEcCCCChhhcCCC---CccccceeehhhccHHHhc--cCCCCEEEecCCCCC-eEEEEeCCCC-EEEEE
Confidence 1122222221 1213343322 1223345554455544443 258999999887665 8899887776 56999
Q ss_pred ccCCCcCC
Q 008476 524 FHPEYKSR 531 (564)
Q Consensus 524 FHPE~ss~ 531 (564)
+|||+...
T Consensus 234 gHPEYd~~ 241 (302)
T PRK05368 234 GHPEYDAD 241 (302)
T ss_pred CCCCCCHH
Confidence 99999764
No 87
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=99.33 E-value=2.2e-12 Score=127.20 Aligned_cols=180 Identities=19% Similarity=0.255 Sum_probs=107.4
Q ss_pred HHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCch--hHHHHHHHHHHHcC-
Q 008476 315 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV--QGKILAAKYAREHR- 391 (564)
Q Consensus 315 SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~--eg~i~~ir~a~e~~- 391 (564)
|+++.++.+|+++ +++.+-.+|++ +.+.++.++|||++||.-.++. +-.-.....+.|++
T Consensus 81 SYVK~aEsgGARV---iPli~nepEe~--------------lfqklelvNGviftGGwak~~dY~~vvkkifnk~le~nD 143 (340)
T KOG1559|consen 81 SYVKLAESGGARV---IPLIYNEPEEI--------------LFQKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERND 143 (340)
T ss_pred HHHHHHHcCCceE---EEEecCCcHHH--------------HHHHHHHhceeEecCcccccccHHHHHHHHHHHHHhccC
Confidence 8999999999997 34445444332 3467889999999999766664 22222334455543
Q ss_pred ----CCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCC--cccccCCceeecceeeEeecCCchhhh
Q 008476 392 ----IPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEG--SKTHMGGTMRLGSRRTYFQIKDCKSAK 465 (564)
Q Consensus 392 ----iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~--~~~~~GgtmrlG~~~v~l~~~~s~~~~ 465 (564)
.|++|||||+.+|.+-...+-.-+. .||.. -..|+-+ ...+.-+||-. +.| + .++.+
T Consensus 144 aGehFPvyg~CLGFE~lsmiISqnrdile-----~~d~v-----d~AssLqF~~nvn~~~t~FQ-rFP----p--ELLkk 206 (340)
T KOG1559|consen 144 AGEHFPVYGICLGFELLSMIISQNRDILE-----RFDAV-----DVASSLQFVGNVNIHGTMFQ-RFP----P--ELLKK 206 (340)
T ss_pred CccccchhhhhhhHHHHHHHHhcChhHHH-----hhccc-----ccccceeeecccceeehhHh-hCC----H--HHHHH
Confidence 8999999999999887663322121 12111 0001100 11222233311 111 1 24455
Q ss_pred ccCCceeEeeeeceeeeeChhhhh---hhccCCeEEEEEeCCCC---eEEEEEeCCCCcEEEEcccCCCcCCCC
Q 008476 466 LYGNRTFIDERHRHRYEVNPDMIA---RLENAGLSFTGKDETSQ---RMEIVELPNHPYFIGVQFHPEYKSRPG 533 (564)
Q Consensus 466 iyg~~~~I~erh~HrYeVn~~~v~---~l~~~gl~~~a~s~dg~---~vE~ie~~~~pffiGvQFHPE~ss~p~ 533 (564)
+-. .. ...++|+|.+.|+... .| ..-+.++-++.|++ .|..++.+.+| +.|+|||||+.+..+
T Consensus 207 L~~-dc--Lvmq~Hk~gisp~nF~~N~~L-s~FFnilTT~~D~~~k~fvSTv~~~kYP-vtgfQWHPEKnafEW 275 (340)
T KOG1559|consen 207 LST-DC--LVMQNHKFGISPKNFQGNPAL-SSFFNILTTCTDGNSKTFVSTVESKKYP-VTGFQWHPEKNAFEW 275 (340)
T ss_pred hcc-ch--heeeccccccchhhccCCHHH-HHHHhheeeecCCCceEEEEeecceecc-ceeeeecCccCcccc
Confidence 542 11 2568899999887543 23 22355666666653 48889999999 569999999976543
No 88
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=99.27 E-value=5.5e-10 Score=122.35 Aligned_cols=89 Identities=25% Similarity=0.311 Sum_probs=64.1
Q ss_pred ceEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCC-
Q 008476 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (564)
Q Consensus 297 ~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r- 375 (564)
+++||++ +.-.+.--|..-+++|+.+|+++ .|+++-. + +.+.++|+|+||||+...
T Consensus 244 ~~~Iava-~d~afnFy~~~~~~~L~~~g~~~------~~~~~~~--d--------------~~l~~~d~l~ipGG~~~~~ 300 (449)
T TIGR00379 244 YVRIAVA-QDQAFNFYYQDNLDALTHNAAEL------VPFSPLE--D--------------TELPDVDAVYIGGGFPELF 300 (449)
T ss_pred CcEEEEE-echhhceeHHHHHHHHHHCCCEE------EEECCcc--C--------------CCCCCCCEEEeCCcHHHHH
Confidence 4799999 44444334667889999887664 4555420 0 235688999999998532
Q ss_pred --ch---hHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 008476 376 --GV---QGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (564)
Q Consensus 376 --~~---eg~i~~ir~a~e~~iPiLGICLGmQll~ia~ 408 (564)
.+ .++.+.++.+.+++.|+||||-|||+|+-.+
T Consensus 301 ~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 301 AEELSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQSL 338 (449)
T ss_pred HHHHHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 11 3567888888899999999999999997654
No 89
>PRK00784 cobyric acid synthase; Provisional
Probab=99.22 E-value=4.2e-10 Score=124.45 Aligned_cols=85 Identities=26% Similarity=0.359 Sum_probs=61.5
Q ss_pred ceEEEEEeccCCCcchHHHHHHHHHH-cCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 008476 297 PVRIAMVGKYTGLSDAYLSILKALLH-ASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (564)
Q Consensus 297 ~~~IavVGkY~~~~Day~SIi~aL~~-aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r 375 (564)
+++|||+ +|.... ++ .=+++|+. +|+++.. +++. +.+.++|||+||||+...
T Consensus 251 ~~~i~v~-~~~~a~-~f-~nl~~l~~~~g~~v~~------~s~~------------------~~l~~~d~lilpGg~~~~ 303 (488)
T PRK00784 251 ALRIAVI-RLPRIS-NF-TDFDPLRAEPGVDVRY------VRPG------------------EPLPDADLVILPGSKNTI 303 (488)
T ss_pred ceEEEEE-eCCCcC-Cc-cChHHHhhcCCCeEEE------ECCc------------------cccccCCEEEECCccchH
Confidence 5899999 665433 34 55788887 8887533 4431 235689999999997442
Q ss_pred ch------hHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 008476 376 GV------QGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (564)
Q Consensus 376 ~~------eg~i~~ir~a~e~~iPiLGICLGmQll~ia~ 408 (564)
.. .++...++.+.+++.|+||||.|||+|+-.+
T Consensus 304 ~~~~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 304 ADLAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRRI 342 (488)
T ss_pred HHHHHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhhc
Confidence 11 2356778888889999999999999997654
No 90
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=99.20 E-value=5e-10 Score=123.42 Aligned_cols=305 Identities=20% Similarity=0.253 Sum_probs=156.2
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCC---------Ccc
Q 008476 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDL---------GNY 74 (564)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtm~p~~hgev~v~~dg~e~dldl---------g~y 74 (564)
||||| .-|+.||=++++.|.+.|+.+|++|...|== .|+= ..+|+.||+|.|-.. --+
T Consensus 1 ~~I~G-T~t~vGKT~v~~~L~~~l~~~G~~v~~fKp~--------~~~~----~s~~~~~~~e~~~a~~~qa~a~~~~~~ 67 (475)
T TIGR00313 1 IMVVG-TTSSAGKSTLTAGLCRILARRGYRVAPFKSQ--------NMSL----NSFVTKEGGEIAIAQATQALAAGIEPS 67 (475)
T ss_pred CEEee-CCCCCCHHHHHHHHHHHHHhCCCeEEEECCc--------cccc----CccccCCCchhHHHHHHHHHhCCCCch
Confidence 57776 5599999999999999999999999988832 1211 245666776653110 012
Q ss_pred ccccCCCCCCCCc-----ccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCc
Q 008476 75 ERFMDIKLTRDNN-----ITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGG 149 (564)
Q Consensus 75 erf~~~~~~~~~~-----~t~g~iy~~vi~ker~g~ylg~tvqviph~t~~i~~~i~~~~~~p~~~~~~~~d~~i~e~gg 149 (564)
++---+.+....+ +..|+.+.....++ |.... .+..-+.|++.+.+.+ .++|++|||=.|
T Consensus 68 ~~~nPv~lk~~~~~~s~~i~~g~~~~~~~a~~----~~~~~---~~~~~~~i~~~~~~l~--------~~~D~vIIEGaG 132 (475)
T TIGR00313 68 VHMNPILLKPKGNFTSQVIVHGRAVGDMNYQE----YYKNK---VDFFLKAIKESLEILA--------REYDYVVIEGAG 132 (475)
T ss_pred hccCCEEeCcCCCCcCcEEEcCcccCcCCHHH----Hhhhh---hHHHHHHHHHHHHHHH--------hcCCEEEEECCC
Confidence 2211111211101 11122111111111 11111 1233466777777765 368999999988
Q ss_pred ccccc----CcchHHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhhhhhhhC-CCcccEEEEeeCCCCCc
Q 008476 150 TIGDI----ESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQ-GLTPNILACRSTVALDD 224 (564)
Q Consensus 150 tvgdi----es~pf~ea~rq~~~~~~~~~~~~~h~~~vp~~~~~~e~ktkptq~svk~l~s~-Gi~pd~lv~R~~~~l~~ 224 (564)
..-|+ +.....+.++.+.. .++.| --+...+-. --+-+.++.++.. ++...++|+-.-.+-..
T Consensus 133 Gl~~~~~~~~d~s~~~lA~~l~a-----pVILV-----~d~~~g~~~--a~i~gt~~~l~~~~~~~i~GvIlNrv~~~~~ 200 (475)
T TIGR00313 133 SPAEINLLKRDLANMRIAELANA-----DAILV-----ADIDRGGVF--ASIYGTLKLLPENWRKLIKGIVINKFRGNVD 200 (475)
T ss_pred CccccccCcCCchHHHHHHHhCC-----CEEEE-----EeCCccHHH--HHHHHHHHHhChhhcCceEEEEEeccCCcHH
Confidence 77664 12233444444432 24444 111111111 1222444444443 35667777743322111
Q ss_pred chhccc---cccCCCCCCCeeeeCC-CCCcccccHHHHHhhhHHHHHHHcCCCCCCCccchHHHHHHHhhhc-CCCCceE
Q 008476 225 NVKGKL---SQFCHVPEQNIITLYD-VPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICD-GLHEPVR 299 (564)
Q Consensus 225 ~~r~ki---sl~~~v~~~~Vi~~~d-vdtiy~vp~~L~~qG~~~~i~~~l~l~~~~~~~~~~~w~~~~~~~~-~~~~~~~ 299 (564)
..++.+ .-++.+ .|++..= .++. +|. .++.++...+. .....++
T Consensus 201 ~~~~~~~~l~e~~gi---pvLG~ip~~~~l--l~~--------------------------~e~~~~~~~~~~~~~~~~~ 249 (475)
T TIGR00313 201 VLKSGIEKLEELTGI---PVLGVLPYDENL--FPE--------------------------EDSLVIQERRSRGNAKSIR 249 (475)
T ss_pred HHHHHHHHHHHhhCC---CEEEEecCCCcC--CCh--------------------------HHhhhHHhhhccCCCCCcE
Confidence 112222 112222 2333211 1111 221 11111111111 1122389
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCch--
Q 008476 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 377 (564)
Q Consensus 300 IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~-- 377 (564)
|||+ +|.... ++. =+++|++. + .+.|++.. +.+.++|+|++|||+-....
T Consensus 250 Iav~-~~~~~~-nf~-~~~~L~~~--~-----~~~f~~~~------------------~~l~~~d~lilpGg~~~~~~~~ 301 (475)
T TIGR00313 250 IGVV-RLPRIS-NFT-DFEPLRYE--A-----FVKFLDLD------------------DSLTGCDAVIIPGSKSTIADLY 301 (475)
T ss_pred EEEE-cCCccc-Ccc-ChHHHhhC--C-----CeEEeCCc------------------cccccCCEEEECCcchHHHHHH
Confidence 9999 765444 232 56788777 2 23566543 23668999999999844221
Q ss_pred ----hHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 008476 378 ----QGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (564)
Q Consensus 378 ----eg~i~~ir~a~e~~iPiLGICLGmQll~ia 407 (564)
.++...++.+.+++.|+||||.|||+|+-.
T Consensus 302 ~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~~ 335 (475)
T TIGR00313 302 ALKQSGFAEEILDFAKEGGIVIGICGGYQMLGKE 335 (475)
T ss_pred HHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhhh
Confidence 245678888888999999999999999754
No 91
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=99.18 E-value=2.5e-10 Score=109.28 Aligned_cols=82 Identities=24% Similarity=0.398 Sum_probs=63.9
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcC-CcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCC-
Q 008476 298 VRIAMVGKYTGLSDAYLSILKALLHAS-VDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (564)
Q Consensus 298 ~~IavVGkY~~~~Day~SIi~aL~~aG-~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r- 375 (564)
+|||+++ ++.+....+++|+.++ +++ .|+.. .++|+++||+|||||-...
T Consensus 1 m~IGVLa----lQG~v~EH~~~l~~~~~~e~------~~Vk~------------------~~dL~~~d~LIiPGGESTTi 52 (194)
T COG0311 1 MKIGVLA----LQGAVEEHLEALEKAGGAEV------VEVKR------------------PEDLEGVDGLIIPGGESTTI 52 (194)
T ss_pred CeEEEEE----ecccHHHHHHHHHhhcCCce------EEEcC------------------HHHhccCcEEEecCccHHHH
Confidence 4789995 5558888999999996 443 33432 1678999999999986652
Q ss_pred ----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 008476 376 ----GVQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (564)
Q Consensus 376 ----~~eg~i~~ir~a~e~~iPiLGICLGmQll~ia 407 (564)
...++.+.++...++++|+||.|-||-+|+-+
T Consensus 53 ~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLake 88 (194)
T COG0311 53 GRLLKRYGLLEPLREFIADGLPVFGTCAGLILLAKE 88 (194)
T ss_pred HHHHHHcCcHHHHHHHHHcCCceEEechhhhhhhhh
Confidence 12467888999999999999999999999754
No 92
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=99.07 E-value=1.6e-09 Score=104.50 Aligned_cols=73 Identities=21% Similarity=0.351 Sum_probs=52.5
Q ss_pred CcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCC-----chhHHHHH
Q 008476 309 LSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-----GVQGKILA 383 (564)
Q Consensus 309 ~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r-----~~eg~i~~ 383 (564)
++.++....++|+++|.+.. .+... ++|+++||||+|||-.+. ...++.+.
T Consensus 4 LQG~~~EH~~~l~~lg~~~~------~Vr~~------------------~dL~~~dgLIiPGGESTti~~ll~~~gL~~~ 59 (188)
T PF01174_consen 4 LQGAFREHIRMLERLGAEVV------EVRTP------------------EDLEGLDGLIIPGGESTTIGKLLRRYGLFEP 59 (188)
T ss_dssp SSSSHHHHHHHHHHTTSEEE------EE-SG------------------GGGTT-SEEEE-SS-HHHHHHHHHHTTHHHH
T ss_pred cccChHHHHHHHHHcCCCeE------EeCCH------------------HHHccCCEEEECCCcHHHHHHHHHHcCCHHH
Confidence 55688888999999998762 13221 568899999999985442 12467888
Q ss_pred HHHHHHcC-CCEEEEehhHHHHH
Q 008476 384 AKYAREHR-IPYLGICLGMQVAV 405 (564)
Q Consensus 384 ir~a~e~~-iPiLGICLGmQll~ 405 (564)
++.+..++ +|+||+|.||-+|+
T Consensus 60 l~~~~~~g~~Pv~GTCAGlIlLa 82 (188)
T PF01174_consen 60 LREFIRSGSKPVWGTCAGLILLA 82 (188)
T ss_dssp HHHHHHTT--EEEEETHHHHHHE
T ss_pred HHHHHHcCCCceeehhHHHHHhh
Confidence 88888887 99999999999984
No 93
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=99.02 E-value=2.1e-08 Score=109.26 Aligned_cols=293 Identities=18% Similarity=0.260 Sum_probs=155.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc-cccCCCCCCCccccceEEEccCCccccCCCCccccccC
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP-YLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMD 79 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp-yln~d~gtm~p~~hgev~v~~dg~e~dldlg~yerf~~ 79 (564)
|+=|||||- =|+.||=.+++.|-+.|+.+|++|...|.-| |+ || ..|. |-.+
T Consensus 1 m~~~~i~~~-~s~~GKT~vt~gl~~~l~~~g~~v~~~K~Gpd~i--D~-----~~~~-------------------~~~g 53 (433)
T PRK13896 1 MKGFVLGGT-SSGVGKTVATLATIRALEDAGYAVQPAKAGPDFI--DP-----SHHE-------------------AVAG 53 (433)
T ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHHHHCCCeeEEEeeCCCCC--CH-----HHHH-------------------HHhC
Confidence 566788875 5999999999999999999999999999877 53 43 2333 2222
Q ss_pred CCCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccch--HHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcc
Q 008476 80 IKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHIT--DEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESM 157 (564)
Q Consensus 80 ~~~~~~~~~t~g~iy~~vi~ker~g~ylg~tvqviph~t--~~i~~~i~~~~~~p~~~~~~~~d~~i~e~ggtvgdies~ 157 (564)
... .| +=||.. +.|++...+ ...|++|||==|=+-|=+..
T Consensus 54 ~~~---~n-------------------------ld~~~~~~~~i~~~~~~----------~~~d~~vIEG~gGl~dg~~~ 95 (433)
T PRK13896 54 RPS---RT-------------------------LDPWLSGEDGMRRNYYR----------GEGDICVVEGVMGLYDGDVS 95 (433)
T ss_pred CCc---cc-------------------------CChhhCCHHHHHHHHHh----------hcCCEEEEECCCccccCCCC
Confidence 221 01 112222 224433321 13799999953333353323
Q ss_pred hHHHHHHHhhhhcCCCCEEEEEeeeeeeecC-CCccccCCchhhhhhhhh---CCCcccEEEEeeCCCC--C----cchh
Q 008476 158 PFIEALGQFSYRVGPGNFCLIHVSLVPVLNV-VGEQKTKPTQHSVRGLRG---QGLTPNILACRSTVAL--D----DNVK 227 (564)
Q Consensus 158 pf~ea~rq~~~~~~~~~~~~~h~~~vp~~~~-~~e~ktkptq~svk~l~s---~Gi~pd~lv~R~~~~l--~----~~~r 227 (564)
-..+-++++... ++.| ..+ .|-.=--+|=.+++++.. .++...++|+-...+- . +...
T Consensus 96 s~adla~~l~~P-----viLV-------v~~~~g~~s~aa~l~g~~~~~~~~~~~~~i~GvIlN~~~~~~h~~~l~~~~~ 163 (433)
T PRK13896 96 STAMVAEALDLP-----VVLV-------VDAKAGMESVAATALGFRAYADRIGRDIDVAGVIAQRAHGGRHADGIRDALP 163 (433)
T ss_pred CHHHHHHHHCCC-----EEEE-------EcCcccHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCcHHHHHHHHHhhh
Confidence 344555554332 2222 211 121111123333344444 4899999998554331 1 1111
Q ss_pred ccccccCCCCCCCeeeeCCCCCcccccHHHH-Hh-h---hHHHHHHHcCCCCCCCccchHHHHHHHhh-------h-cCC
Q 008476 228 GKLSQFCHVPEQNIITLYDVPNIWHIPLLLR-DQ-K---AHEAIFKVLNLQGTTKEPLLKEWTSRAEI-------C-DGL 294 (564)
Q Consensus 228 ~kisl~~~v~~~~Vi~~~dvdtiy~vp~~L~-~q-G---~~~~i~~~l~l~~~~~~~~~~~w~~~~~~-------~-~~~ 294 (564)
+.+..+..++...-+.+ ++| ++-|.-- |. . ..+.+-+.++++ .-.++... . ...
T Consensus 164 ~~i~vlG~lP~~~~~~~---~~R-HLGLv~~~e~~~~~~~~~~~~~~~d~~---------~l~~~a~~~~~~~~~~~~~~ 230 (433)
T PRK13896 164 DELTYFGRIPPRDDLEI---PDR-HLGLHMGSEAPLDDDALDEAAEHIDAE---------RLAAVAREPPRPEPPEEAPA 230 (433)
T ss_pred hcCceeEecccCCCCCC---CCC-CcCCCcchhhccHHHHHHHHHHhCCHH---------HHHHHhhCCCCccccccccC
Confidence 12344555554333322 344 3332211 10 0 111122222221 11111100 0 011
Q ss_pred CCceEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCC
Q 008476 295 HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 374 (564)
Q Consensus 295 ~~~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~ 374 (564)
...++|||--|- .+.=-|..-+++|+.+ +++. ++++ +.+ +.+.++|+|++|||+-.
T Consensus 231 ~~~~~iavA~D~-AF~FyY~enl~~L~~~-aelv------~fSP--l~~--------------~~lp~~D~l~lpGG~~e 286 (433)
T PRK13896 231 TGDPTVAVARDA-AFCFRYPATIERLRER-ADVV------TFSP--VAG--------------DPLPDCDGVYLPGGYPE 286 (433)
T ss_pred CCCCeEEEEEcC-ccceeCHHHHHHHHhc-CcEE------EEcC--CCC--------------CCCCCCCEEEeCCCchh
Confidence 223799998443 2333577888999998 6652 2322 211 23558899999999855
Q ss_pred Cch-----hHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 008476 375 RGV-----QGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (564)
Q Consensus 375 r~~-----eg~i~~ir~a~e~~iPiLGICLGmQll~ia 407 (564)
-.. .+..+.++.+.+++.|++|||-|||+|+-.
T Consensus 287 ~~~~~L~~n~~~~~i~~~~~~G~pi~aeCGG~q~L~~~ 324 (433)
T PRK13896 287 LHADALADSPALDELADRAADGLPVLGECGGLMALAES 324 (433)
T ss_pred hHHHHHHhCCcHHHHHHHHHCCCcEEEEehHHHHhhcc
Confidence 221 123477888888999999999999999644
No 94
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=98.90 E-value=1.2e-08 Score=104.16 Aligned_cols=197 Identities=21% Similarity=0.280 Sum_probs=103.1
Q ss_pred ceEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCc
Q 008476 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (564)
Q Consensus 297 ~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~ 376 (564)
++||+|+ -+- ....-.....||+.+|+++.. .|+ +++-... ..|+++|+|++||||+.-.
T Consensus 1 kpkV~Vl-~~p-GtNce~e~~~A~~~aG~~~~~----v~~--~dl~~~~------------~~l~~~~~lvipGGFS~gD 60 (259)
T PF13507_consen 1 KPKVAVL-RFP-GTNCERETAAAFENAGFEPEI----VHI--NDLLSGE------------SDLDDFDGLVIPGGFSYGD 60 (259)
T ss_dssp --EEEEE-E-T-TEEEHHHHHHHHHCTT-EEEE----EEC--CHHHTTS--------------GCC-SEEEE-EE-GGGG
T ss_pred CCEEEEE-ECC-CCCCHHHHHHHHHHcCCCceE----EEE--Eeccccc------------CchhhCcEEEECCccCccc
Confidence 3688988 443 233667899999999999754 222 2321111 3688999999999975421
Q ss_pred -------h-------hHHHHHHHHHHHc-CCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCccc
Q 008476 377 -------V-------QGKILAAKYAREH-RIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKT 441 (564)
Q Consensus 377 -------~-------eg~i~~ir~a~e~-~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~ 441 (564)
+ ....++++.+.++ +.|+||||-|+|+|+ ++| ++.. -...+ ....+.+++...
T Consensus 61 ~l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~-~~G--llp~--~~~~~-----~~~~~~L~~N~s-- 128 (259)
T PF13507_consen 61 YLRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQILV-ELG--LLPG--GEIKD-----SEQSPALTPNAS-- 128 (259)
T ss_dssp TTSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHC-CCC--CSTT-------------TT--EEE--TT--
T ss_pred cchHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHH-HhC--cCCC--ccccc-----cCCCcEEcCCCC--
Confidence 1 1235667777777 999999999999994 443 2211 00000 011122222110
Q ss_pred ccCCceeecceeeEee--cCC-ch-hhhccCCceeEeeeece-eeee-ChhhhhhhccCCeEEEEEe-------------
Q 008476 442 HMGGTMRLGSRRTYFQ--IKD-CK-SAKLYGNRTFIDERHRH-RYEV-NPDMIARLENAGLSFTGKD------------- 502 (564)
Q Consensus 442 ~~GgtmrlG~~~v~l~--~~~-s~-~~~iyg~~~~I~erh~H-rYeV-n~~~v~~l~~~gl~~~a~s------------- 502 (564)
+ |+=...+.+. +.+ +. ++.+ ....+-..|.+ ||.+ +++.++.|+..+....-+.
T Consensus 129 ---~--~fe~rwv~~~v~~~s~~~~~~~~--~~~~lPiahgeG~~~~~~~~~l~~l~~~~qi~~~Y~~~~g~~a~~yP~N 201 (259)
T PF13507_consen 129 ---G--RFESRWVNLVVNENSPSIFLRGL--EGIVLPIAHGEGRFYARDEATLEELEENGQIAFRYVDEEGNPAQEYPRN 201 (259)
T ss_dssp ---S--S-EEEEEEEEE--SSTTCCCTTT--TCEEEEEEESS-EEE-SSHHHHHHHCCTTEEEEEECSTTSSB--STTTS
T ss_pred ---C--CeEEEEEEEEEecCCcceecCCC--CEEEEEEecCcceeecCCHHHHHHHHhcCeEEEEEecCCCCcccCCCCC
Confidence 1 1111122221 121 11 1111 12233345544 5667 6777888888887766554
Q ss_pred CCCC--eEEEEEeCCCCcEEEEcccCCCcCCCC
Q 008476 503 ETSQ--RMEIVELPNHPYFIGVQFHPEYKSRPG 533 (564)
Q Consensus 503 ~dg~--~vE~ie~~~~pffiGvQFHPE~ss~p~ 533 (564)
++|. -+++|-.++.. ++|...|||....+.
T Consensus 202 PNGS~~~IAGics~~Gr-vlglMpHPEr~~~~~ 233 (259)
T PF13507_consen 202 PNGSVNNIAGICSPDGR-VLGLMPHPERAFEPW 233 (259)
T ss_dssp SS--GGGEEEEE-TTSS-EEEESSBCCGTTCCC
T ss_pred CCCCccceeEEEcCCCC-EEEEcCChHHhCchh
Confidence 3342 38999999988 569999999987654
No 95
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=98.83 E-value=1.3e-07 Score=113.39 Aligned_cols=220 Identities=17% Similarity=0.199 Sum_probs=123.9
Q ss_pred CceEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 008476 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (564)
Q Consensus 296 ~~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r 375 (564)
.++||+|+ -+- ....-.....|++.+|+++.. .|+. ++....+. +..+++...|+++|+|++||||..-
T Consensus 976 ~kpkvaIl-~~p-GtNce~d~a~Af~~aG~~~~~----v~~~--dl~~~~i~---~s~~~~~~~l~~~~~l~~pGGFSyG 1044 (1239)
T TIGR01857 976 EKPRVVIP-VFP-GTNSEYDSAKAFEKEGAEVNL----VIFR--NLNEEALV---ESVETMVDEIDKSQILMLPGGFSAG 1044 (1239)
T ss_pred CCCeEEEE-ECC-CCCCHHHHHHHHHHcCCceEE----EEEe--cCcccccc---cchhhhhcccccCcEEEEcCccCcc
Confidence 46899999 553 233667889999999998533 2332 22211110 0111122457899999999998542
Q ss_pred c-------h-------hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCC-CCCeeeecCCCcc
Q 008476 376 G-------V-------QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNT-KNPCVIFMPEGSK 440 (564)
Q Consensus 376 ~-------~-------eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~-~~~vi~~m~e~~~ 440 (564)
. + ....++++.+.+++.|+||||.|+|+|+ ++| |-.. .++.+.+ ..| .++....
T Consensus 1045 D~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~-~lG-----LlP~--~~~~~~~~~~p--~l~~N~s- 1113 (1239)
T TIGR01857 1045 DEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALV-KSG-----LLPY--GNIEAANETSP--TLTYNDI- 1113 (1239)
T ss_pred cccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHH-HcC-----CCcC--ccccccccCCc--eeeecCC-
Confidence 1 1 2345566666678999999999999994 443 2110 0010000 001 1111100
Q ss_pred cccCCceeeccee--eEeecCCchhhhcc--CCceeEeeeece-eeeeChhhhhhhccCCeEEEEE-------------e
Q 008476 441 THMGGTMRLGSRR--TYFQIKDCKSAKLY--GNRTFIDERHRH-RYEVNPDMIARLENAGLSFTGK-------------D 502 (564)
Q Consensus 441 ~~~GgtmrlG~~~--v~l~~~~s~~~~iy--g~~~~I~erh~H-rYeVn~~~v~~l~~~gl~~~a~-------------s 502 (564)
+ |+=.+. +++....|.+-.-+ +..-.|...|.- ||.++++.+++|+..|...+-+ +
T Consensus 1114 ----~--rf~~r~v~~~v~~~~s~~~~~~~~g~~~~ipvaHgEGrf~~~~~~l~~l~~~~qva~rYvd~~g~~t~~~p~N 1187 (1239)
T TIGR01857 1114 ----N--RHVSKIVRTRIASTNSPWLSGVSVGDIHAIPVSHGEGRFVASDEVLAELRENGQIATQYVDFNGKPSMDSKYN 1187 (1239)
T ss_pred ----C--CeEEeeeEEEECCCCChhHhcCCCCCEEEEEeEcCCcceecCHHHHHHHHHCCcEEEEEeCCCCCcccCCCCC
Confidence 0 111111 22222223332222 222335556644 6777777777887777665544 4
Q ss_pred CCCCe--EEEEEeCCCCcEEEEcccCCCcCCCCC-------chHHHHHHHH
Q 008476 503 ETSQR--MEIVELPNHPYFIGVQFHPEYKSRPGK-------PSPLFLGNIS 544 (564)
Q Consensus 503 ~dg~~--vE~ie~~~~pffiGvQFHPE~ss~p~~-------p~pLF~~Fv~ 544 (564)
+||.. +++|-.++.+ ++|..-|||....+.- ...||++.++
T Consensus 1188 PNGS~~~IaGi~s~dGr-vlg~MpHpER~~~~~~~~~~g~~~~~iF~~~v~ 1237 (1239)
T TIGR01857 1188 PNGSSLAIEGITSPDGR-IFGKMGHSERYGDGLFKNIPGNKDQHLFASGVK 1237 (1239)
T ss_pred CCCChhhhhEeECCCCC-EEEECCCcccccCcccCCCCchhhhHHHHHHHh
Confidence 56653 7888888887 5699999999865432 2578887764
No 96
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.81 E-value=1e-07 Score=115.81 Aligned_cols=197 Identities=19% Similarity=0.158 Sum_probs=115.1
Q ss_pred CceEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 008476 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (564)
Q Consensus 296 ~~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r 375 (564)
.++||+|+ -+- ....-.....||+.+|+.+.. .|+ .++.... ..|+++++|++||||..-
T Consensus 1034 ~~pkv~il-~~p-G~N~~~e~~~Af~~aG~~~~~----v~~--~dl~~~~------------~~l~~~~~l~~~GGFS~g 1093 (1290)
T PRK05297 1034 ARPKVAIL-REQ-GVNSHVEMAAAFDRAGFDAID----VHM--SDLLAGR------------VTLEDFKGLVACGGFSYG 1093 (1290)
T ss_pred CCCeEEEE-ECC-CCCCHHHHHHHHHHcCCCeEE----EEe--ecCcCCC------------CChhhCcEEEECCccCCc
Confidence 45799999 553 233677889999999999733 222 2343211 247899999999997552
Q ss_pred ch--h------------HHHHHHHHHH-HcCCCEEEEehhHHHHHHHhccccccccCC-cccccCCCCCCCeeeecCCCc
Q 008476 376 GV--Q------------GKILAAKYAR-EHRIPYLGICLGMQVAVIEFARSVLNLRDA-NSTEFDPNTKNPCVIFMPEGS 439 (564)
Q Consensus 376 ~~--e------------g~i~~ir~a~-e~~iPiLGICLGmQll~ia~g~~vlgl~dA-~s~Ef~~~~~~~vi~~m~e~~ 439 (564)
.. . ...+.++.+. +.+.++||||.|+|+|+ ++| .++ +.+ ++..+..+.....+.
T Consensus 1094 D~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~-~lg-~l~--p~~~~~p~l~~N~s~rfes------ 1163 (1290)
T PRK05297 1094 DVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMS-NLK-EII--PGAEHWPRFVRNRSEQFEA------ 1163 (1290)
T ss_pred ccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHH-HhC-Ccc--CCCCCCCeEeecCCCCeEE------
Confidence 21 1 2234455533 56899999999999994 554 221 111 000111111000000
Q ss_pred ccccCCceeecceeeEeecCCc-hhhhccCCceeEeeeece-eeeeChhhhhhhccCCeEEEEE-------------eCC
Q 008476 440 KTHMGGTMRLGSRRTYFQIKDC-KSAKLYGNRTFIDERHRH-RYEVNPDMIARLENAGLSFTGK-------------DET 504 (564)
Q Consensus 440 ~~~~GgtmrlG~~~v~l~~~~s-~~~~iyg~~~~I~erh~H-rYeVn~~~v~~l~~~gl~~~a~-------------s~d 504 (564)
| .-.+++....| .+..+-|..-.+...|.| ||.++++.+..|...|...+-+ |++
T Consensus 1164 --------r--~~~~~v~~~~s~~~~~~~g~~l~~~vaHgeGr~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~NPN 1233 (1290)
T PRK05297 1164 --------R--FSLVEVQESPSIFLQGMAGSRLPIAVAHGEGRAEFPDAHLAALEAKGLVALRYVDNHGQVTETYPANPN 1233 (1290)
T ss_pred --------e--eeEEEECCCCChhHhhcCCCEEEEEEEcCcccEEcCHHHHHHHHHCCcEEEEEECCCCCcccCCCCCCC
Confidence 0 01122222223 333333322346677876 5667766677777777655444 566
Q ss_pred CCe--EEEEEeCCCCcEEEEcccCCCcCCCC
Q 008476 505 SQR--MEIVELPNHPYFIGVQFHPEYKSRPG 533 (564)
Q Consensus 505 g~~--vE~ie~~~~pffiGvQFHPE~ss~p~ 533 (564)
|.. +++|-.++.+ ++|...|||....+.
T Consensus 1234 GS~~~IaGi~s~dGr-vlglMpHPEr~~~~~ 1263 (1290)
T PRK05297 1234 GSPNGITGLTTADGR-VTIMMPHPERVFRTV 1263 (1290)
T ss_pred CChhcceEeECCCCC-EEEEcCChHHhcchh
Confidence 653 8888889888 569999999977654
No 97
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=98.75 E-value=1.7e-07 Score=88.43 Aligned_cols=89 Identities=19% Similarity=0.235 Sum_probs=62.8
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCcc--eeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 008476 298 VRIAMVGKYTGLSDAYLSILKALLHASVDL--RKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (564)
Q Consensus 298 ~~IavVGkY~~~~Day~SIi~aL~~aG~~v--~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r 375 (564)
..||++ .++.++...++.++++-++. .+++++.-+.. .+++.++||+|+|||-...
T Consensus 12 ~VIGVL----ALQGAFiEH~N~~~~c~~en~y~Ik~~~~tVKT------------------~~D~aq~DaLIIPGGEST~ 69 (226)
T KOG3210|consen 12 VVIGVL----ALQGAFIEHVNHVEKCIVENRYEIKLSVMTVKT------------------KNDLAQCDALIIPGGESTA 69 (226)
T ss_pred eEEeee----ehhhHHHHHHHHHHHhhccCcceEEEEEEeecC------------------HHHHhhCCEEEecCCchhH
Confidence 457877 47779999999999887776 55555555443 1578899999999986542
Q ss_pred -----chhHHHHHHHHHHHcC-CCEEEEehhHHHHHHHh
Q 008476 376 -----GVQGKILAAKYAREHR-IPYLGICLGMQVAVIEF 408 (564)
Q Consensus 376 -----~~eg~i~~ir~a~e~~-iPiLGICLGmQll~ia~ 408 (564)
...+....+.....+. +|+||.|.||-+|+-.+
T Consensus 70 mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~ql 108 (226)
T KOG3210|consen 70 MSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQQL 108 (226)
T ss_pred HHHHHhhhhhHHHHHHHhcCCCccceeechhhhhhhhhh
Confidence 1134444444445555 99999999999997554
No 98
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.70 E-value=3.2e-08 Score=96.73 Aligned_cols=83 Identities=28% Similarity=0.350 Sum_probs=61.9
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-h-
Q 008476 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-V- 377 (564)
Q Consensus 300 IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~-~- 377 (564)
|+|+ +|+... ++.|+.++++..|+++.+ ++.. +.+.++|+|+||||+.... .
T Consensus 1 ~~~~-~y~~~g-N~~~l~~~~~~~G~~~~~------~~~~------------------~~~~~~d~lilpGg~~~~~~~~ 54 (194)
T cd01750 1 IAVI-RYPDIS-NFTDLDPLAREPGVDVRY------VEVP------------------EGLGDADLIILPGSKDTIQDLA 54 (194)
T ss_pred CEee-cCCCcc-CHHHHHHHHhcCCceEEE------EeCC------------------CCCCCCCEEEECCCcchHHHHH
Confidence 4666 787554 889999999999987644 3322 1256789999999974321 1
Q ss_pred ----hHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 008476 378 ----QGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (564)
Q Consensus 378 ----eg~i~~ir~a~e~~iPiLGICLGmQll~ia~ 408 (564)
.+..+.++.+.++++|+||||.|||+|+-.+
T Consensus 55 ~~~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~~~ 89 (194)
T cd01750 55 WLRKRGLAEAIKNYARAGGPVLGICGGYQMLGKYI 89 (194)
T ss_pred HHHHcCHHHHHHHHHHCCCcEEEECHHHHHhhhhc
Confidence 2356778888889999999999999997654
No 99
>PF00988 CPSase_sm_chain: Carbamoyl-phosphate synthase small chain, CPSase domain; InterPro: IPR002474 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the small subunit of carbamoyl phosphate synthase. The small subunit has a 3-layer beta/beta/alpha structure, and is thought to be mobile in most proteins that carry it. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity.; GO: 0006807 nitrogen compound metabolic process; PDB: 1CE8_B 1KEE_B 1CS0_D 1T36_D 1M6V_H 1A9X_F 1JDB_I 1BXR_F 1C3O_B 1C30_F ....
Probab=98.69 E-value=1e-09 Score=100.42 Aligned_cols=65 Identities=12% Similarity=0.156 Sum_probs=47.1
Q ss_pred hhhhhCCCcccEEEEeeCCCCCcchhccccccCCCCCCCeeeeCCCCCcccccHHHHHhhhHHHHH
Q 008476 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIF 267 (564)
Q Consensus 202 k~l~s~Gi~pd~lv~R~~~~l~~~~r~kisl~~~v~~~~Vi~~~dvdtiy~vp~~L~~qG~~~~i~ 267 (564)
.++||.++++.++|||+.++.+++|+++.+|..|+++++|+++.++||| +|+++||++|.|++++
T Consensus 66 ~~~ES~~~~~~g~iv~e~~~~~s~~~~~~sL~~~L~~~~ipgi~gvDTR-aLt~~lR~~G~m~g~I 130 (131)
T PF00988_consen 66 EDFESDRIHVKGLIVRELSDIPSHWRSEMSLDEWLKEHGIPGISGVDTR-ALTRKLREKGSMKGVI 130 (131)
T ss_dssp GG-SSSS--BSEEE-SB--SS---TT-SB-HHHHHHHTT-EEEESS-HH-HHHHHHHHH--EEEEE
T ss_pred ccCCCCceeeeeeeeccccCCCccccccCCHHHHHHHCCCeeeeCCcHH-HHHHHHHhcCCceEEE
Confidence 4599999999999999999999999999999999999999999999999 9999999999997654
No 100
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.67 E-value=3.6e-07 Score=110.41 Aligned_cols=204 Identities=14% Similarity=0.138 Sum_probs=114.6
Q ss_pred CCceEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCC--
Q 008476 295 HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF-- 372 (564)
Q Consensus 295 ~~~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGf-- 372 (564)
..++||+|+ .+- ....-.....||+.+|+.+.. .|+ .++.+.. ..|++++||++||||
T Consensus 1035 ~~~pkVaVl-~~p-GtN~~~e~~~Af~~aGf~~~~----V~~--~dl~~~~------------~~L~~~~glv~pGGFSy 1094 (1307)
T PLN03206 1035 TSKPKVAII-REE-GSNGDREMAAAFYAAGFEPWD----VTM--SDLLNGR------------ISLDDFRGIVFVGGFSY 1094 (1307)
T ss_pred CCCCeEEEE-ECC-CCCCHHHHHHHHHHcCCceEE----EEe--eeccccc------------ccccceeEEEEcCcCCC
Confidence 356899999 553 233667889999999998733 222 2443211 347899999999998
Q ss_pred CCCc-----h-------hHHHHHHHHHH-HcCCCEEEEehhHHHHHHHhccccccccCCccccc---CCCCCCCeeeecC
Q 008476 373 GNRG-----V-------QGKILAAKYAR-EHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEF---DPNTKNPCVIFMP 436 (564)
Q Consensus 373 G~r~-----~-------eg~i~~ir~a~-e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef---~~~~~~~vi~~m~ 436 (564)
||.- + ....+.++.+. +.+.++||||.|+|+|+ ++| ++ +.+..... ..+...| .+..
T Consensus 1095 GD~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~-~lg--ll--Pg~~~~~~~~~~~~e~~p--~l~~ 1167 (1307)
T PLN03206 1095 ADVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMA-LLG--WV--PGPQVGGGLGAGGDPSQP--RFVH 1167 (1307)
T ss_pred ccccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHH-HcC--CC--CCCccccccccccccCCc--eeee
Confidence 4421 1 22344455555 45899999999999995 432 21 11110000 0000011 1111
Q ss_pred CCcccccCCceeecce--eeEeecCCch-hhhccCCceeEeeeeceee-ee-ChhhhhhhccCCeEEEEE----------
Q 008476 437 EGSKTHMGGTMRLGSR--RTYFQIKDCK-SAKLYGNRTFIDERHRHRY-EV-NPDMIARLENAGLSFTGK---------- 501 (564)
Q Consensus 437 e~~~~~~GgtmrlG~~--~v~l~~~~s~-~~~iyg~~~~I~erh~HrY-eV-n~~~v~~l~~~gl~~~a~---------- 501 (564)
+.-+ |+=++ .+++.+..|. +..+-|..-.+...|.|+- .+ +++.+.+|...|...+-+
T Consensus 1168 -----N~s~--rfesr~v~v~V~~s~si~l~~~~G~~l~i~vaHgEGr~~~~~~~~l~~l~~~gqva~rY~d~~g~~t~~ 1240 (1307)
T PLN03206 1168 -----NESG--RFECRFTSVTIEDSPAIMLKGMEGSTLGVWAAHGEGRAYFPDESVLDEVLKSNLAPVRYCDDDGEPTEQ 1240 (1307)
T ss_pred -----cCCC--CeEEeceEEEECCCCChhhcccCCCEEEEEEEcCCCCeecCCHHHHHHHHhcCeEEEEEeCCCCCccCC
Confidence 0001 11111 1222222232 3333332334677887743 43 355667776777655443
Q ss_pred ---eCCCCe--EEEEEeCCCCcEEEEcccCCCcCCCC
Q 008476 502 ---DETSQR--MEIVELPNHPYFIGVQFHPEYKSRPG 533 (564)
Q Consensus 502 ---s~dg~~--vE~ie~~~~pffiGvQFHPE~ss~p~ 533 (564)
|++|.. +++|-.++.+ ++|...|||....+.
T Consensus 1241 yP~NPNGS~~~IAGi~s~dGR-vlgmMpHPER~~~~~ 1276 (1307)
T PLN03206 1241 YPFNPNGSPLGIAALCSPDGR-HLAMMPHPERCFLMW 1276 (1307)
T ss_pred CCCCCCCChhhceeeECCCCC-EEEEcCCHHHhhhhh
Confidence 566654 8888888888 569999999876654
No 101
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=98.65 E-value=3.4e-07 Score=111.10 Aligned_cols=195 Identities=16% Similarity=0.129 Sum_probs=109.7
Q ss_pred CceEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 008476 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (564)
Q Consensus 296 ~~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r 375 (564)
.++||||+ .+-. ...-.....||+.+|+.... .|+ .++.... ..|++++||++||||..-
T Consensus 1054 ~~p~vail-~~pG-~N~~~e~~~Af~~aGf~~~~----v~~--~dl~~~~------------~~l~~~~~lv~~GGFSyg 1113 (1310)
T TIGR01735 1054 VRPKVAIL-REQG-VNGDREMAAAFDRAGFEAWD----VHM--SDLLAGR------------VHLDEFRGLAACGGFSYG 1113 (1310)
T ss_pred CCceEEEE-ECCC-CCCHHHHHHHHHHhCCCcEE----EEE--eccccCC------------cchhheeEEEEcCCCCCc
Confidence 46899999 5532 33667889999999998633 232 2333211 237889999999997542
Q ss_pred ch--------------hHHHHHHHHHH-HcCCCEEEEehhHHHHHHHhccccccccC-Cc-ccccCCCCCCCeeeecCCC
Q 008476 376 GV--------------QGKILAAKYAR-EHRIPYLGICLGMQVAVIEFARSVLNLRD-AN-STEFDPNTKNPCVIFMPEG 438 (564)
Q Consensus 376 ~~--------------eg~i~~ir~a~-e~~iPiLGICLGmQll~ia~g~~vlgl~d-A~-s~Ef~~~~~~~vi~~m~e~ 438 (564)
.. ....+.++.+. +.+.++||||.|+|+|+-..| |-. +. ...+-.+......
T Consensus 1114 D~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~g-----llp~~~~~p~l~~N~s~~fe------ 1182 (1310)
T TIGR01735 1114 DVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLE-----WIPGTENWPHFVRNNSERFE------ 1182 (1310)
T ss_pred cchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhC-----cCCCCCCCceeeecCCCCeE------
Confidence 11 12344455555 668999999999999973322 221 10 0001111000000
Q ss_pred cccccCCceeecceeeEeecCCc-hhhhccCCceeEeeeece-eee-eChhhhhhhccCCeEEEEE-------------e
Q 008476 439 SKTHMGGTMRLGSRRTYFQIKDC-KSAKLYGNRTFIDERHRH-RYE-VNPDMIARLENAGLSFTGK-------------D 502 (564)
Q Consensus 439 ~~~~~GgtmrlG~~~v~l~~~~s-~~~~iyg~~~~I~erh~H-rYe-Vn~~~v~~l~~~gl~~~a~-------------s 502 (564)
-| .-.+++.+..| .+..+-|..-.+...|.+ ||. .+++....++..+...+-+ |
T Consensus 1183 --------~r--~~~~~v~~s~s~~~~~~~g~~l~~~vaHgEGr~~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~N 1252 (1310)
T TIGR01735 1183 --------AR--VASVRVGESPSIMLRGMAGSRLPVAVAHGEGYAAFSSPELQAQADASGLAALRYIDDDGNPTEAYPLN 1252 (1310)
T ss_pred --------Ee--eeEEEECCCCChhhhhcCCCEEEEEeEcCCCCeeeCCHHHHHHHHhCCeEEEEEeCCCCCccCCCCCC
Confidence 00 11122222223 233332322345667765 433 3555566676666554443 4
Q ss_pred CCCCe--EEEEEeCCCCcEEEEcccCCCcCCC
Q 008476 503 ETSQR--MEIVELPNHPYFIGVQFHPEYKSRP 532 (564)
Q Consensus 503 ~dg~~--vE~ie~~~~pffiGvQFHPE~ss~p 532 (564)
++|.. +++|-.++.+ ++|...|||....+
T Consensus 1253 PNGS~~~IaGi~s~dGr-vl~~MpHPEr~~~~ 1283 (1310)
T TIGR01735 1253 PNGSPGGIAGITSCDGR-VTIMMPHPERVFRA 1283 (1310)
T ss_pred CCCChhcceEeECCCCC-EEEEcCCHHHhhhH
Confidence 66653 8888888887 55999999987654
No 102
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.48 E-value=2.6e-07 Score=101.85 Aligned_cols=78 Identities=21% Similarity=0.216 Sum_probs=53.8
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCC-Cc
Q 008476 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN-RG 376 (564)
Q Consensus 298 ~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~-r~ 376 (564)
+||||+ +..|+.++|++.|.. .+.+.|++.. +.+.++|+||||||.-. .+
T Consensus 1 m~iGvl--------al~sv~~al~~lg~~---~~~vv~~~~~------------------~~l~~~D~lILPGG~~~~~~ 51 (476)
T PRK06278 1 MEIGLL--------DIKGSLPCFENFGNL---PTKIIDENNI------------------KEIKDLDGLIIPGGSLVESG 51 (476)
T ss_pred CEEEEE--------ehhhHHHHHHHhcCC---CcEEEEeCCh------------------HHhccCCEEEECCCchhhcc
Confidence 479999 668999999999862 1234454431 45789999999997522 11
Q ss_pred -h-hHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 008476 377 -V-QGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (564)
Q Consensus 377 -~-eg~i~~ir~a~e~~iPiLGICLGmQll~ia 407 (564)
+ ++..+.+ ++.++|+||||.|||||+-.
T Consensus 52 ~l~~~l~~~i---~~~g~pvlGICgG~QmLg~~ 81 (476)
T PRK06278 52 SLTDELKKEI---LNFDGYIIGICSGFQILSEK 81 (476)
T ss_pred hHHHHHHHHH---HHcCCeEEEEcHHHHhcccc
Confidence 1 2333333 34489999999999999744
No 103
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.47 E-value=3.8e-07 Score=89.50 Aligned_cols=75 Identities=23% Similarity=0.263 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCC---ch---hHHHHHHH
Q 008476 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR---GV---QGKILAAK 385 (564)
Q Consensus 312 ay~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r---~~---eg~i~~ir 385 (564)
-|..-+++|+.+|+++.+ ++... + +.+.++|+|+||||+... .. .++.+.++
T Consensus 12 ~y~e~~~~l~~~G~~v~~------~s~~~--~--------------~~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~ 69 (198)
T cd03130 12 YYPENLELLEAAGAELVP------FSPLK--D--------------EELPDADGLYLGGGYPELFAEELSANQSMRESIR 69 (198)
T ss_pred ccHHHHHHHHHCCCEEEE------ECCCC--C--------------CCCCCCCEEEECCCchHHHHHHHHhhHHHHHHHH
Confidence 577889999999977633 43310 0 234568999999986442 11 35678888
Q ss_pred HHHHcCCCEEEEehhHHHHHHHh
Q 008476 386 YAREHRIPYLGICLGMQVAVIEF 408 (564)
Q Consensus 386 ~a~e~~iPiLGICLGmQll~ia~ 408 (564)
.+.++++|++|||.|||+|+-.+
T Consensus 70 ~~~~~g~pilgICgG~qlL~~~~ 92 (198)
T cd03130 70 AFAESGGPIYAECGGLMYLGESL 92 (198)
T ss_pred HHHHcCCCEEEEcccHHHHHHHh
Confidence 88889999999999999997654
No 104
>PHA03366 FGAM-synthase; Provisional
Probab=98.20 E-value=2.2e-05 Score=95.84 Aligned_cols=91 Identities=19% Similarity=0.173 Sum_probs=63.0
Q ss_pred CCCceEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCC
Q 008476 294 LHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 373 (564)
Q Consensus 294 ~~~~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG 373 (564)
+..++||||+ .+- ....-.....||..+|+++.. +.-.++... +.|++++||++||||+
T Consensus 1025 ~~~~prVaIl-~~p-G~N~~~e~~~Af~~aGf~~~~------v~~~dL~~~-------------~~l~~f~glv~~GGFS 1083 (1304)
T PHA03366 1025 PDKRHRVAVL-LLP-GCPGPHALLAAFTNAGFDPYP------VSIEELKDG-------------TFLDEFSGLVIGGSSG 1083 (1304)
T ss_pred CCCCCeEEEE-ECC-CCCCHHHHHHHHHHcCCceEE------EEeecCCCC-------------CccccceEEEEcCCCC
Confidence 4457899999 453 233667899999999999643 222344321 2278899999999986
Q ss_pred CCc-------h-------hHHHHHHHHHH-HcCCCEEEEeh-hHHHHH
Q 008476 374 NRG-------V-------QGKILAAKYAR-EHRIPYLGICL-GMQVAV 405 (564)
Q Consensus 374 ~r~-------~-------eg~i~~ir~a~-e~~iPiLGICL-GmQll~ 405 (564)
... + +...++++.+. +.+.+.||||- |+|+|+
T Consensus 1084 ~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~ 1131 (1304)
T PHA03366 1084 AEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILF 1131 (1304)
T ss_pred CcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHH
Confidence 632 1 23345555555 45899999997 999995
No 105
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=98.14 E-value=3.7e-05 Score=93.33 Aligned_cols=90 Identities=19% Similarity=0.209 Sum_probs=61.1
Q ss_pred CCceEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCC
Q 008476 295 HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 374 (564)
Q Consensus 295 ~~~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~ 374 (564)
..++||||+ .+- ....-.....|++.+|+.+.. +.-.++... +.|++++||+++|||+.
T Consensus 927 ~~~p~VaIl-~~p-G~N~~~e~~~Af~~aGf~~~~------v~~~dl~~~-------------~~l~~f~glv~~Ggfsy 985 (1202)
T TIGR01739 927 DPRHQVAVL-LLP-GQSVPHGLLAALTNAGFDPRI------VSITELKKT-------------DFLDTFSGLIIGGASGT 985 (1202)
T ss_pred CCCCeEEEE-eCC-CCCCHHHHHHHHHHcCCceEE------EEeccCCCC-------------CchhheEEEEEcCcCCC
Confidence 446899999 553 233667899999999999643 233344321 23678899999999865
Q ss_pred Cch--------------hHHHHHHHHHH-HcCCCEEEEeh-hHHHHH
Q 008476 375 RGV--------------QGKILAAKYAR-EHRIPYLGICL-GMQVAV 405 (564)
Q Consensus 375 r~~--------------eg~i~~ir~a~-e~~iPiLGICL-GmQll~ 405 (564)
... ....+.++.+. +.+.+.||||- |+|+|+
T Consensus 986 ~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~ 1032 (1202)
T TIGR01739 986 LDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLL 1032 (1202)
T ss_pred CccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHH
Confidence 321 12334455555 45899999997 999995
No 106
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=98.04 E-value=0.0011 Score=71.96 Aligned_cols=87 Identities=23% Similarity=0.240 Sum_probs=63.5
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhcc-CCCEEEeCCCCCCC-
Q 008476 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK-GADGILVPGGFGNR- 375 (564)
Q Consensus 298 ~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~-~~DGIllpGGfG~r- 375 (564)
.||||.-|- .+.=-|..-++.|+.+|+++.- .++ +.+ +.+. ++|+|.|||||-.-
T Consensus 246 ~rIAVA~D~-AF~FyY~~nl~~Lr~~GAelv~------FSP--L~D--------------~~lP~~~D~vYlgGGYPElf 302 (451)
T COG1797 246 VRIAVARDA-AFNFYYPENLELLREAGAELVF------FSP--LAD--------------EELPPDVDAVYLGGGYPELF 302 (451)
T ss_pred ceEEEEecc-hhccccHHHHHHHHHCCCEEEE------eCC--cCC--------------CCCCCCCCEEEeCCCChHHH
Confidence 689998442 2333578899999999999732 222 221 2354 69999999987652
Q ss_pred -----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 008476 376 -----GVQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (564)
Q Consensus 376 -----~~eg~i~~ir~a~e~~iPiLGICLGmQll~ia 407 (564)
..+.+.+.|+.+.+.++|++|=|-|+--|+-.
T Consensus 303 A~~L~~n~~~~~~i~~~~~~G~piyaECGGlMYL~~~ 339 (451)
T COG1797 303 AEELSANESMRRAIKAFAAAGKPIYAECGGLMYLGES 339 (451)
T ss_pred HHHHhhCHHHHHHHHHHHHcCCceEEecccceeehhh
Confidence 23567888999999999999999999777533
No 107
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=97.97 E-value=3.8e-05 Score=64.10 Aligned_cols=76 Identities=28% Similarity=0.358 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCch----hHHHHHHHHH
Q 008476 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV----QGKILAAKYA 387 (564)
Q Consensus 312 ay~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~----eg~i~~ir~a 387 (564)
.+.+..++|+.+++.+.+ ++........ .+...++|++++|||+..+.. ..+++.++.+
T Consensus 13 ~~~~~~~~l~~~~~~~~~------~~~~~~~~~~-----------~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~ 75 (115)
T cd01653 13 ELASPLDALREAGAEVDV------VSPDGGPVES-----------DVDLDDYDGLILPGGPGTPDDLARDEALLALLREA 75 (115)
T ss_pred hhHHHHHHHHHCCCeEEE------EcCCCCceec-----------cCChhccCEEEECCCCCchhhhccCHHHHHHHHHH
Confidence 467889999999855543 4433221100 023578999999999877542 5678888888
Q ss_pred HHcCCCEEEEehhHHHH
Q 008476 388 REHRIPYLGICLGMQVA 404 (564)
Q Consensus 388 ~e~~iPiLGICLGmQll 404 (564)
.++++|++|+|.|+|++
T Consensus 76 ~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 76 AAAGKPILGICLGAQLL 92 (115)
T ss_pred HHcCCEEEEECchhHhH
Confidence 88999999999999999
No 108
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=97.84 E-value=2.2e-05 Score=70.78 Aligned_cols=84 Identities=19% Similarity=0.247 Sum_probs=54.8
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCch--
Q 008476 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 377 (564)
Q Consensus 300 IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~-- 377 (564)
|+|--+.+....+.+.+.+.|+... .+ ..++.+++...+ |+ .++|.||+|||.....+
T Consensus 2 v~VY~g~g~~~~~~~~~~~~L~~~~-~v------~~~~~~~I~~~~-----------~~--~~ad~lVlPGGa~~~~~~~ 61 (114)
T cd03144 2 VLVYNGPGASPGSLKHLAELLRLYL-AV------STVTADELAVGP-----------WE--SKTALLVVPGGADLPYCRA 61 (114)
T ss_pred EEEEeCCCCCHHHHHHHHHHHhhcc-ce------eeecHHHHhcCc-----------hh--hCCCEEEECCCChHHHHHH
Confidence 4444444444556778888888754 22 225555553221 22 58999999996433322
Q ss_pred ---hHHHHHHHHHHHcCCCEEEEehhHHHH
Q 008476 378 ---QGKILAAKYAREHRIPYLGICLGMQVA 404 (564)
Q Consensus 378 ---eg~i~~ir~a~e~~iPiLGICLGmQll 404 (564)
.+ .++++.+.+++.|+||||+|.=++
T Consensus 62 L~~~g-~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 62 LNGKG-NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred HHhhC-cHHHHHHHHCCCcEEEEecCccce
Confidence 23 777888778899999999998876
No 109
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=97.83 E-value=3.4e-05 Score=76.54 Aligned_cols=93 Identities=22% Similarity=0.197 Sum_probs=61.4
Q ss_pred CCceEEEEEeccCCCcchH-HHHHHHHHHc-CCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCC
Q 008476 295 HEPVRIAMVGKYTGLSDAY-LSILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF 372 (564)
Q Consensus 295 ~~~~~IavVGkY~~~~Day-~SIi~aL~~a-G~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGf 372 (564)
+...+|+++.-=....+.| .++.++++.. |+++... .. .+.+ +..+.+.++|+|++|||-
T Consensus 29 ~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~-~~--~~~~---------------~~~~~l~~ad~I~l~GG~ 90 (212)
T cd03146 29 KARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHL-HL--FDTE---------------DPLDALLEADVIYVGGGN 90 (212)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEE-ec--cCcc---------------cHHHHHhcCCEEEECCch
Confidence 3467999994222223344 4889999999 8876542 10 1101 123678899999999961
Q ss_pred CCCc---h--hHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 008476 373 GNRG---V--QGKILAAKYAREHRIPYLGICLGMQVAV 405 (564)
Q Consensus 373 G~r~---~--eg~i~~ir~a~e~~iPiLGICLGmQll~ 405 (564)
-.+. + .+...+++.+.+++.|++|||.|+|+|.
T Consensus 91 ~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~i~~ 128 (212)
T cd03146 91 TFNLLAQWREHGLDAILKAALERGVVYIGWSAGSNCWF 128 (212)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhHHhhC
Confidence 1111 1 2456677777788999999999999995
No 110
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=97.82 E-value=0.00023 Score=73.98 Aligned_cols=194 Identities=17% Similarity=0.266 Sum_probs=95.1
Q ss_pred CceEEEEEeccCCCc-chHHHHHHHHHHcCCcceeeeEEEEecCCCccccccc-CCchhhhHHHHhc--cCCCEEEeCCC
Q 008476 296 EPVRIAMVGKYTGLS-DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEK-ENPDAYKAAWKLL--KGADGILVPGG 371 (564)
Q Consensus 296 ~~~~IavVGkY~~~~-Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~-~~p~~y~~~~~~L--~~~DGIllpGG 371 (564)
+.++|+|+ +-...+ ++-..+.+.|...... |++.|+....-...+.. +.-.++..-++.+ +.+||+||+|.
T Consensus 33 rpL~I~Il-NLMP~K~~TE~Q~lrlL~~tplq----v~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGA 107 (298)
T PF04204_consen 33 RPLKIGIL-NLMPDKEETERQFLRLLSNTPLQ----VEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGA 107 (298)
T ss_dssp --EEEEEE----SSHHHHHHHHHHHCCSSSS-----EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE---
T ss_pred cceEEEEE-ecccchHHHHHHHHHHhcCCCCc----eEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCC
Confidence 46899999 443222 2222445554444333 34555543322111100 0011222223444 48999999998
Q ss_pred CCCC-------chhHHHHHHHHHHHcCCCEEEEehhHHHHHH-HhccccccccCCcccccCCCCCCCeeeecCCCccccc
Q 008476 372 FGNR-------GVQGKILAAKYAREHRIPYLGICLGMQVAVI-EFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHM 443 (564)
Q Consensus 372 fG~r-------~~eg~i~~ir~a~e~~iPiLGICLGmQll~i-a~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~ 443 (564)
|=.. -++...+.+.+++++..+.|.||.|.|.+.. .+|-+-..+ +
T Consensus 108 PvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l--------------------~------- 160 (298)
T PF04204_consen 108 PVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPL--------------------P------- 160 (298)
T ss_dssp TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEE--------------------E-------
T ss_pred CcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccC--------------------C-------
Confidence 6542 2467888999999999999999999999543 334222111 0
Q ss_pred CCceeecceeeEe-ecCCchhhhccCCceeEeeeeceee-eeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEE
Q 008476 444 GGTMRLGSRRTYF-QIKDCKSAKLYGNRTFIDERHRHRY-EVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIG 521 (564)
Q Consensus 444 GgtmrlG~~~v~l-~~~~s~~~~iyg~~~~I~erh~HrY-eVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiG 521 (564)
.-.+|-++..+ .+.+.+++++- + .+..-| -|| +++.+.+. +..++.+++.+++.. +-.+..+++.. +=
T Consensus 161 --~KlfGVf~~~~~~~~~pLl~Gfd-d--~f~~Ph-SR~t~i~~~~i~--~~~~L~vLa~s~~~G-~~l~~~~d~r~-vf 230 (298)
T PF04204_consen 161 --EKLFGVFEHRVLDPDHPLLRGFD-D--TFFAPH-SRYTEIDRDDIK--KAPGLEVLAESEEAG-VFLVASKDGRQ-VF 230 (298)
T ss_dssp --EEEEEEEEEEES-SS-GGGTT---S--EEEEEE-EEEEE--HHHHC--T-TTEEEEEEETTTE-EEEEEECCCTE-EE
T ss_pred --CcceeceeeeccCCCChhhcCCC-c--cccCCc-ccccCCCHHHHh--cCCCcEEEeccCCcc-eEEEEcCCCCE-EE
Confidence 01133444442 23335565553 1 233334 234 35544442 368999999998765 88888888874 47
Q ss_pred EcccCCCcCC
Q 008476 522 VQFHPEYKSR 531 (564)
Q Consensus 522 vQFHPE~ss~ 531 (564)
+|-|||+...
T Consensus 231 i~GH~EYd~~ 240 (298)
T PF04204_consen 231 ITGHPEYDAD 240 (298)
T ss_dssp E-S-TT--TT
T ss_pred EeCCCccChh
Confidence 9999999765
No 111
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=97.70 E-value=0.00023 Score=68.86 Aligned_cols=52 Identities=19% Similarity=0.137 Sum_probs=43.7
Q ss_pred ccCCCEEEeCCCCCC-------CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccc
Q 008476 360 LKGADGILVPGGFGN-------RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARS 411 (564)
Q Consensus 360 L~~~DGIllpGGfG~-------r~~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~ 411 (564)
..++||+||+|.|=. .-++...+.+.+++++..|.||||.|+|++...+++-
T Consensus 60 ~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi 118 (175)
T cd03131 60 DAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGI 118 (175)
T ss_pred ccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCc
Confidence 578999999998643 1245788899999999999999999999998887764
No 112
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=97.66 E-value=4.8e-05 Score=72.00 Aligned_cols=51 Identities=31% Similarity=0.348 Sum_probs=42.2
Q ss_pred HhccCCCEEEeCCCCCCCc------hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 008476 358 KLLKGADGILVPGGFGNRG------VQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (564)
Q Consensus 358 ~~L~~~DGIllpGGfG~r~------~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~ 408 (564)
+.+.++|+|+||||+-.-. ..++.+.|+.+.+++.|++|||-|||+|.-.+
T Consensus 3 ~~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i 59 (158)
T PF07685_consen 3 ELPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESI 59 (158)
T ss_pred CCCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHH
Confidence 3578999999999876532 14678889999999999999999999997664
No 113
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=97.59 E-value=0.00019 Score=57.07 Aligned_cols=75 Identities=28% Similarity=0.361 Sum_probs=51.6
Q ss_pred HHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCch----hHHHHHHHHHH
Q 008476 313 YLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV----QGKILAAKYAR 388 (564)
Q Consensus 313 y~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~----eg~i~~ir~a~ 388 (564)
+.++.+.++..++...+ +......... .....++|++++|||...... ...++.+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~-----------~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~ 76 (92)
T cd03128 14 LASPLDALREAGAEVDV------VSPDGGPVES-----------DVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAA 76 (92)
T ss_pred eecHHHHHHhCCCEEEE------EeCCCCcccc-----------cCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHH
Confidence 45778888888865543 2222111000 023578999999999877543 46677788888
Q ss_pred HcCCCEEEEehhHHHH
Q 008476 389 EHRIPYLGICLGMQVA 404 (564)
Q Consensus 389 e~~iPiLGICLGmQll 404 (564)
+++.|++|+|.|+|++
T Consensus 77 ~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 77 AAGKPVLGICLGAQLL 92 (92)
T ss_pred HcCCEEEEEecccccC
Confidence 8899999999999874
No 114
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=97.58 E-value=0.0014 Score=67.94 Aligned_cols=195 Identities=14% Similarity=0.209 Sum_probs=107.1
Q ss_pred CceEEEEEeccCCCc-chHHHHHHHHHHcCCcceeeeEEEEecCCCccccccc-CC-chhhhHHHHh-ccCCCEEEeCCC
Q 008476 296 EPVRIAMVGKYTGLS-DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEK-EN-PDAYKAAWKL-LKGADGILVPGG 371 (564)
Q Consensus 296 ~~~~IavVGkY~~~~-Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~-~~-p~~y~~~~~~-L~~~DGIllpGG 371 (564)
+.++|+|+ .-...+ ++=..+++.|......+ ++.|+..+.-...+.. +. ...|....+. -+.+||+||+|.
T Consensus 34 rpL~I~IL-NLMP~K~~TE~Q~lRlL~ntplqv----~i~~~~~~sh~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITGA 108 (300)
T TIGR01001 34 RPLEILIL-NLMPKKIETENQFLRLLSNSPLQV----NITLLRTDSRKSKNTPIEHLNKFYTTFEAVKDRKFDGLIITGA 108 (300)
T ss_pred cceeEEEE-ecCCccHHHHHHHHHHhcCCCCce----EEEEEEeccccCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcCC
Confidence 45899999 544332 33446777775444443 3445543322211100 00 1124333332 268999999998
Q ss_pred CCCC-------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccC
Q 008476 372 FGNR-------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMG 444 (564)
Q Consensus 372 fG~r-------~~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~G 444 (564)
|=.. -++...+.+.+++++-...|.||.|.|.+...+ +|++. . .++++
T Consensus 109 PvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~----yGI~K---~------------~l~~K------ 163 (300)
T TIGR01001 109 PVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYF----YGIPK---Y------------TLPEK------ 163 (300)
T ss_pred CcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHH----cCCCc---c------------ccCCc------
Confidence 6441 257788899999999999999999999965442 22211 0 01111
Q ss_pred CceeecceeeEeecCCchhhhccCCceeEeeeeceee-eeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEc
Q 008476 445 GTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRY-EVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQ 523 (564)
Q Consensus 445 gtmrlG~~~v~l~~~~s~~~~iyg~~~~I~erh~HrY-eVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGvQ 523 (564)
.+|-++....+.+.+++++- + .+..-| -|| +++.+.+.+ ..++.+++.+++.. +-.+..+++..+ =+|
T Consensus 164 ---lfGVf~h~~~~~~pL~rGfd-d--~f~~Ph-SR~t~i~~~~i~~--~~~L~vla~s~e~G-~~l~~s~d~r~v-fi~ 232 (300)
T TIGR01001 164 ---LSGVYKHDIAPDSLLLRGFD-D--FFLAPH-SRYADFDAEDIDK--VTDLEILAESDEAG-VYLAANKDERNI-FVT 232 (300)
T ss_pred ---eEEeecCccCCCCccccCCC-C--ccccCC-CCCCCCCHHHHhc--CCCCeEEecCCCcc-eEEEEcCCCCEE-EEc
Confidence 01112211112223333332 1 111222 122 355444432 36899999887766 788888887644 599
Q ss_pred ccCCCcCC
Q 008476 524 FHPEYKSR 531 (564)
Q Consensus 524 FHPE~ss~ 531 (564)
-|||+...
T Consensus 233 GH~EYd~~ 240 (300)
T TIGR01001 233 GHPEYDAY 240 (300)
T ss_pred CCCccChh
Confidence 99999765
No 115
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=97.00 E-value=0.0029 Score=59.47 Aligned_cols=45 Identities=22% Similarity=0.337 Sum_probs=37.5
Q ss_pred CCCEEEeCCCCCCCc---hhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008476 362 GADGILVPGGFGNRG---VQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (564)
Q Consensus 362 ~~DGIllpGGfG~r~---~eg~i~~ir~a~e~~iPiLGICLGmQll~i 406 (564)
++|+|+||||++... .......++.+.++++|+.|||-|.++|+-
T Consensus 60 ~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~ 107 (166)
T TIGR01382 60 EYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLIS 107 (166)
T ss_pred HCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHh
Confidence 689999999976322 246788889999999999999999999863
No 116
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=96.79 E-value=0.0022 Score=64.14 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=41.2
Q ss_pred ccCCCEEEeCCCCCCC--------------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 008476 360 LKGADGILVPGGFGNR--------------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (564)
Q Consensus 360 L~~~DGIllpGGfG~r--------------~~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~ 408 (564)
.+++|+|++|||+|.. ..+...++++.+.++++|+..||-|-++|+-++
T Consensus 83 ~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 83 AEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred hhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 4689999999998741 235688899999999999999999999997654
No 117
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=96.76 E-value=0.0079 Score=56.48 Aligned_cols=46 Identities=22% Similarity=0.335 Sum_probs=37.7
Q ss_pred cCCCEEEeCCCCCCCc---hhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008476 361 KGADGILVPGGFGNRG---VQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~---~eg~i~~ir~a~e~~iPiLGICLGmQll~i 406 (564)
..+|+|+||||++... ....+..++.+.++++|+.|||-|-++|+-
T Consensus 61 ~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~ 109 (165)
T cd03134 61 DDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLIS 109 (165)
T ss_pred HHCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCeEEEEchHHHHHHh
Confidence 3689999999985432 256788899999999999999999999853
No 118
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=96.67 E-value=0.003 Score=63.00 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=40.6
Q ss_pred ccCCCEEEeCCCCCCC--------------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 008476 360 LKGADGILVPGGFGNR--------------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (564)
Q Consensus 360 L~~~DGIllpGGfG~r--------------~~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~ 408 (564)
++++|+|++|||++.. ..+..++.++.+.++++|+.+||-|-++|+-+.
T Consensus 80 ~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~ 142 (213)
T cd03133 80 AADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKIL 142 (213)
T ss_pred HhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHh
Confidence 4579999999997631 134678889999999999999999999997655
No 119
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=96.44 E-value=0.009 Score=60.47 Aligned_cols=106 Identities=20% Similarity=0.259 Sum_probs=70.7
Q ss_pred cchHHHHHHHhhhcCCCCceEEEEEeccCCC---cchHH-HHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhh
Q 008476 279 PLLKEWTSRAEICDGLHEPVRIAMVGKYTGL---SDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYK 354 (564)
Q Consensus 279 ~~~~~w~~~~~~~~~~~~~~~IavVGkY~~~---~Day~-SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~ 354 (564)
.-+..|..+...+-. +.+||++| -+-.. .+.|. +..++++..|+++.. ++..+
T Consensus 15 ~~l~~~~~~~~~~~~--~~~~v~fI-PtAs~~~~~~~y~~~~~~af~~lG~~v~~------l~~~~-------------- 71 (233)
T PRK05282 15 GYLEHALPLIAELLA--GRRKAVFI-PYAGVTQSWDDYTAKVAEALAPLGIEVTG------IHRVA-------------- 71 (233)
T ss_pred chHHHHHHHHHHHHc--CCCeEEEE-CCCCCCCCHHHHHHHHHHHHHHCCCEEEE------eccch--------------
Confidence 355677777766533 35789999 55432 23344 678888888987532 22110
Q ss_pred HHHHhccCCCEEEeCCCCCCCc-----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 008476 355 AAWKLLKGADGILVPGGFGNRG-----VQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (564)
Q Consensus 355 ~~~~~L~~~DGIllpGGfG~r~-----~eg~i~~ir~a~e~~iPiLGICLGmQll~ia 407 (564)
+..+.+.++|+|+++||--.+- -.+...+++.+.++++|+.|+|.|.-+++-.
T Consensus 72 d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~ 129 (233)
T PRK05282 72 DPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGPT 129 (233)
T ss_pred hhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhcc
Confidence 1225688999999999732221 1356778888889999999999999887543
No 120
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.33 E-value=0.0053 Score=58.87 Aligned_cols=45 Identities=22% Similarity=0.352 Sum_probs=37.3
Q ss_pred CCCEEEeCCCCCCCc---hhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008476 362 GADGILVPGGFGNRG---VQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (564)
Q Consensus 362 ~~DGIllpGGfG~r~---~eg~i~~ir~a~e~~iPiLGICLGmQll~i 406 (564)
.+|+|+||||++... .......++.+.++++|+.|||.|.++|+.
T Consensus 76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~ 123 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAA 123 (180)
T ss_pred HCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHH
Confidence 679999999976422 245778889999999999999999999864
No 121
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=96.26 E-value=0.023 Score=52.17 Aligned_cols=102 Identities=16% Similarity=0.150 Sum_probs=60.7
Q ss_pred eEEEEEeccCCCc-chHHHHHHHHHHcCCcceeeeEEEEecCCCcccc-cccCCch-hhhHHHHhccCCCEEEeCCCCCC
Q 008476 298 VRIAMVGKYTGLS-DAYLSILKALLHASVDLRKKLVIDWIPACDLEDA-TEKENPD-AYKAAWKLLKGADGILVPGGFGN 374 (564)
Q Consensus 298 ~~IavVGkY~~~~-Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~-~~~~~p~-~y~~~~~~L~~~DGIllpGGfG~ 374 (564)
.||+++ =|.... -.+.+..+.|+.+|+++.+. ..+...+... ...-.++ .+++ .....+|.|+||||.+.
T Consensus 2 ~~v~il-l~~g~~~~e~~~~~~~~~~a~~~v~vv----s~~~~~v~s~~g~~i~~~~~l~~--~~~~~~D~liVpGg~~~ 74 (142)
T cd03132 2 RKVGIL-VADGVDAAELSALKAALKAAGANVKVV----APTLGGVVDSDGKTLEVDQTYAG--APSVLFDAVVVPGGAEA 74 (142)
T ss_pred CEEEEE-EcCCcCHHHHHHHHHHHHHCCCEEEEE----ecCcCceecCCCcEEecceeecC--CChhhcCEEEECCCccC
Confidence 467777 344333 24668899999999776541 1111111000 0000000 0100 01135899999998765
Q ss_pred C----chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008476 375 R----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (564)
Q Consensus 375 r----~~eg~i~~ir~a~e~~iPiLGICLGmQll~i 406 (564)
. .....++.++.+.++++|+.+||-|-.+|+-
T Consensus 75 ~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~~~La~ 110 (142)
T cd03132 75 AFALAPSGRALHFVTEAFKHGKPIGAVGEGSDLLEA 110 (142)
T ss_pred HHHHccChHHHHHHHHHHhcCCeEEEcCchHHHHHH
Confidence 2 2356788888888899999999999998863
No 122
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=96.19 E-value=0.023 Score=54.68 Aligned_cols=102 Identities=18% Similarity=0.214 Sum_probs=63.9
Q ss_pred eEEEEEeccCCCcch-HHHHHHHHHHcCCcceeeeEEEEecCCCccccc--ccCCchhhhHHHHh--ccCCCEEEeCCC-
Q 008476 298 VRIAMVGKYTGLSDA-YLSILKALLHASVDLRKKLVIDWIPACDLEDAT--EKENPDAYKAAWKL--LKGADGILVPGG- 371 (564)
Q Consensus 298 ~~IavVGkY~~~~Da-y~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~--~~~~p~~y~~~~~~--L~~~DGIllpGG- 371 (564)
.+|+++ .+....+. +..-.+.|+.+|..+.+. ..+.......... ....+. ...+. .+++|+|++|||
T Consensus 3 ~~i~i~-~~~g~e~~E~~~p~~~l~~ag~~v~~~--~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~ydal~ipGG~ 76 (188)
T COG0693 3 KKIAIL-LADGFEDLELIVPYDVLRRAGFEVDVA--SPEGKGKSVTSKRGGLVVADD---KAFDDADAADYDALVIPGGD 76 (188)
T ss_pred ceeEEE-ecCcceehhHhHHHHHHHHCCCeEEEE--ecCCCcceeecccCcceEecc---cccccCCHhHCCEEEECCCc
Confidence 467766 45444434 667888999999986552 1111100111000 000000 01122 358999999999
Q ss_pred CCCCch---hHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 008476 372 FGNRGV---QGKILAAKYAREHRIPYLGICLGMQVAV 405 (564)
Q Consensus 372 fG~r~~---eg~i~~ir~a~e~~iPiLGICLGmQll~ 405 (564)
.|.... +..+..++++.++++|+..||-|-++|.
T Consensus 77 ~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~ 113 (188)
T COG0693 77 HGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLA 113 (188)
T ss_pred cchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHh
Confidence 666432 5788999999999999999999999995
No 123
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=96.11 E-value=0.31 Score=52.55 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=56.8
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCc--
Q 008476 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-- 376 (564)
Q Consensus 299 ~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~-- 376 (564)
+|.|--.-+....+-...+++|+.. ..... .+..++++++..+. ...+++-+|+|||...+-
T Consensus 2 nVlVY~G~G~~~~sv~~~~~~Lr~~-l~p~y--~V~~v~~~~l~~~p-------------w~~~~~LlV~PGG~d~~y~~ 65 (367)
T PF09825_consen 2 NVLVYNGPGTSPESVRHTLESLRRL-LSPHY--AVIPVTADELLNEP-------------WQSKCALLVMPGGADLPYCR 65 (367)
T ss_pred eEEEEecCCCCHHHHHHHHHHHHHh-cCCCe--EEEEeCHHHhhcCc-------------cccCCcEEEECCCcchHHHH
Confidence 4555533333344455566667653 11112 33456666554311 246789999999875542
Q ss_pred -hhHH-HHHHHHHHHcCCCEEEEehhHHHHH
Q 008476 377 -VQGK-ILAAKYAREHRIPYLGICLGMQVAV 405 (564)
Q Consensus 377 -~eg~-i~~ir~a~e~~iPiLGICLGmQll~ 405 (564)
..+. ...||...+++--+||||.|--+.+
T Consensus 66 ~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as 96 (367)
T PF09825_consen 66 SLNGEGNRRIRQFVENGGGYLGICAGAYYAS 96 (367)
T ss_pred hhChHHHHHHHHHHHcCCcEEEECcchhhhc
Confidence 2333 7889999899999999999988764
No 124
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=95.92 E-value=0.0086 Score=66.03 Aligned_cols=112 Identities=26% Similarity=0.324 Sum_probs=72.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtm~p~~hgev~v~~dg~e~dldlg~yerf~~~ 80 (564)
||.|.| -|..|..||=..+|-+=++|..+||+|..-|- =.||= -=|||.||+|.
T Consensus 1 ~~~iMv-~GT~S~~GKS~~~aglcRi~~~~G~~V~PFK~--------QNMsL----Ns~it~~G~EI------------- 54 (486)
T COG1492 1 MKAIMV-QGTTSDAGKSFLVAGLCRILARRGYRVAPFKS--------QNMSL----NSAITPGGGEI------------- 54 (486)
T ss_pred CCccEE-EeccCCcchhhhhhhhhHHHHhcCCccCCCch--------hhccc----ccEECCCCcEE-------------
Confidence 344444 36889999999999999999999999997773 23332 34889999885
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCC---------CeeEEcccc-------------------hHHHHHHHHHHhccc
Q 008476 81 KLTRDNNITTGKIYQSVIDKERKGDYLG---------KTVQVVPHI-------------------TDEIQDWIERVAMIP 132 (564)
Q Consensus 81 ~~~~~~~~t~g~iy~~vi~ker~g~ylg---------~tvqviph~-------------------t~~i~~~i~~~~~~p 132 (564)
-.+|.+|..=...+.--|-. .+-|||=|= -.++++.+.++
T Consensus 55 --------graQ~~QA~Aa~i~p~v~mNPvLLKP~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l---- 122 (486)
T COG1492 55 --------GRAQALQALAAGIEPSVHMNPVLLKPCSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERL---- 122 (486)
T ss_pred --------ehhhhHHHHHcCCCCccccCCEEEeecCCCceEEEEecccccccChHHHHHHHHHHHHHHHHHHHHHh----
Confidence 23455555544443333311 245555432 22344444444
Q ss_pred CCCCCCCCcEEEEeeCcccccc
Q 008476 133 VDGKEGPVDVCVIELGGTIGDI 154 (564)
Q Consensus 133 ~~~~~~~~d~~i~e~ggtvgdi 154 (564)
....|+|++|--|+-..|
T Consensus 123 ----~~~~d~Vv~EGAGSpaEi 140 (486)
T COG1492 123 ----DREYDVVVIEGAGSPAEI 140 (486)
T ss_pred ----hhcccEEEEecCCChhhc
Confidence 357899999999986553
No 125
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=95.60 E-value=0.026 Score=55.77 Aligned_cols=164 Identities=18% Similarity=0.211 Sum_probs=90.8
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCC
Q 008476 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLT 83 (564)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtm~p~~hgev~v~~dg~e~dldlg~yerf~~~~~~ 83 (564)
||||| .=++.||=.+++.|.+.|+.+|++|-..| |.++|--... .|=|.-...++.+....
T Consensus 2 i~I~~-t~t~~GKT~vs~~L~~~l~~~g~~v~~~K-------------Pv~~g~~~~~-----~~~d~~~~~~~~~~~~~ 62 (222)
T PRK00090 2 LFVTG-TDTDVGKTVVTAALAQALREAGYSVAGYK-------------PVQSGCEETD-----RNGDALALQRLSGLPLD 62 (222)
T ss_pred EEEEe-CCCCcCHHHHHHHHHHHHHHcCCceEEEe-------------eEecCCCCCC-----CcHHHHHHHHHcCCCCC
Confidence 56765 46999999999999999999999998865 6666631110 12233334555443322
Q ss_pred CCCcccchHhhHHH----HhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCcccccc--Ccc
Q 008476 84 RDNNITTGKIYQSV----IDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDI--ESM 157 (564)
Q Consensus 84 ~~~~~t~g~iy~~v----i~ker~g~ylg~tvqviph~t~~i~~~i~~~~~~p~~~~~~~~d~~i~e~ggtvgdi--es~ 157 (564)
. ...++-.|+.. +..++.| . +--.+.|++.+.+++ .++|+||||-.|.+.+- .++
T Consensus 63 ~--~~~~~~~~~~~~sp~~a~~~~~----~-----~~~~~~i~~~~~~l~--------~~~D~viIEg~gg~~~~~~~~~ 123 (222)
T PRK00090 63 Y--EDVNPYRFEEPLSPHLAAALEG----V-----AIDLEKISAALRRLA--------QQYDLVLVEGAGGLLVPLTEDL 123 (222)
T ss_pred h--hhcCceeeCCCCCHHHHHHHhC----C-----CCCHHHHHHHHHHHH--------hhCCEEEEECCCceeccCCCCC
Confidence 1 11122222111 1111222 1 113467888887764 46899999988766432 111
Q ss_pred hHHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhhhhhhhCCCcccEEEEee
Q 008476 158 PFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRS 218 (564)
Q Consensus 158 pf~ea~rq~~~~~~~~~~~~~h~~~vp~~~~~~e~ktkptq~svk~l~s~Gi~pd~lv~R~ 218 (564)
-..+-+++ ++ -.++.|.- +. .+. ..-+.-+++.+++.|+...++|+-.
T Consensus 124 ~~adl~~~----l~-~pvilV~~---~~---~~~--i~~~~~~i~~l~~~~~~i~gvIlN~ 171 (222)
T PRK00090 124 TLADLAKQ----LQ-LPVILVVG---VK---LGC--INHTLLTLEAIRARGLPLAGWVANG 171 (222)
T ss_pred cHHHHHHH----hC-CCEEEEEC---CC---CcH--HHHHHHHHHHHHHCCCCeEEEEEcc
Confidence 22223333 33 12333331 11 122 2246677888888899988888754
No 126
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=95.56 E-value=0.14 Score=49.75 Aligned_cols=100 Identities=11% Similarity=0.135 Sum_probs=59.7
Q ss_pred eEEEEEeccCCCcch-HHHHHHHHHHcCCcceeeeEEEEecCC---Cccc-ccccCCchhhhHHHHhc--cCCCEEEeCC
Q 008476 298 VRIAMVGKYTGLSDA-YLSILKALLHASVDLRKKLVIDWIPAC---DLED-ATEKENPDAYKAAWKLL--KGADGILVPG 370 (564)
Q Consensus 298 ~~IavVGkY~~~~Da-y~SIi~aL~~aG~~v~v~v~i~wi~s~---~le~-~~~~~~p~~y~~~~~~L--~~~DGIllpG 370 (564)
+||+|+ =|..+.+. +....+.|+.+|+++.+- . +... .+.. ....-.+ +...+.+ .++|.|+|||
T Consensus 3 ~~~~il-~~~g~~~~e~~~p~~~l~~ag~~v~~~-s---~~~~~~~~v~ss~G~~v~~---d~~l~~~~~~~~D~l~ipG 74 (196)
T PRK11574 3 ASALVC-LAPGSEETEAVTTIDLLVRGGIKVTTA-S---VASDGNLEITCSRGVKLLA---DAPLVEVADGDFDVIVLPG 74 (196)
T ss_pred ceEEEE-eCCCcchhhHhHHHHHHHHCCCeEEEE-E---ccCCCCceEEcCCCCEEeC---CCCHHHCCCCCCCEEEECC
Confidence 467766 45444433 667888899888775441 1 1110 0100 0000001 0011222 4789999999
Q ss_pred CCCCC----chhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 008476 371 GFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (564)
Q Consensus 371 GfG~r----~~eg~i~~ir~a~e~~iPiLGICLGmQll~ 405 (564)
|++.. ..+..+..++.+.++++|+.+||-|-.++.
T Consensus 75 G~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll 113 (196)
T PRK11574 75 GIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVL 113 (196)
T ss_pred CCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHH
Confidence 97532 224578889999999999999999999753
No 127
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=95.55 E-value=0.067 Score=50.55 Aligned_cols=126 Identities=16% Similarity=0.210 Sum_probs=78.1
Q ss_pred eCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCCCCC
Q 008476 7 TGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLTRDN 86 (564)
Q Consensus 7 tggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtm~p~~hgev~v~~dg~e~dldlg~yerf~~~~~~~~~ 86 (564)
..+--.|.||=.+|+.|+..|..+|+||-++-.||--.. .. +++
T Consensus 4 v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~----~~------------------------~~~-------- 47 (169)
T cd02037 4 VMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPS----IP------------------------KMW-------- 47 (169)
T ss_pred EecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCC----ch------------------------HHH--------
Confidence 334457899999999999999999999999998885421 10 000
Q ss_pred cccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHHHHHHh
Q 008476 87 NITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQF 166 (564)
Q Consensus 87 ~~t~g~iy~~vi~ker~g~ylg~tvqviph~t~~i~~~i~~~~~~p~~~~~~~~d~~i~e~ggtvgdies~pf~ea~rq~ 166 (564)
+ -|...+.+++.+.... ...+|+||+-.++.++|. .+.+++
T Consensus 48 ----------------~----------~~~~~~~l~~~~~~~~-------~~~yD~VIiD~pp~~~~~----~~~~~~-- 88 (169)
T cd02037 48 ----------------R----------GPMKMGAIKQFLTDVD-------WGELDYLVIDMPPGTGDE----HLTLAQ-- 88 (169)
T ss_pred ----------------h----------CcchHHHHHHHHHHhh-------cCCCCEEEEeCCCCCcHH----HHHHHh--
Confidence 0 0122344555555543 257999999999998761 122221
Q ss_pred hhhcCCCCEEEEEeeeeeeecCCCccccCCchhhhhhhhhCCCcccEEEEe
Q 008476 167 SYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACR 217 (564)
Q Consensus 167 ~~~~~~~~~~~~h~~~vp~~~~~~e~ktkptq~svk~l~s~Gi~pd~lv~R 217 (564)
+ ...+..++|. ..+..--+-+...++.+++.|+...++|+-
T Consensus 89 ---~-----~~ad~viiV~--~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N 129 (169)
T cd02037 89 ---S-----LPIDGAVIVT--TPQEVALDDVRKAIDMFKKVNIPILGVVEN 129 (169)
T ss_pred ---c-----cCCCeEEEEE--CCchhhHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 0 0112223332 123444445566778888999988887773
No 128
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=95.51 E-value=0.056 Score=51.74 Aligned_cols=48 Identities=25% Similarity=0.316 Sum_probs=39.9
Q ss_pred hccCCCEEEeCCCCCCC---chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008476 359 LLKGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (564)
Q Consensus 359 ~L~~~DGIllpGGfG~r---~~eg~i~~ir~a~e~~iPiLGICLGmQll~i 406 (564)
.+.++|.|+||||.+.. ..+..++.++.+.++++++.+||-|-++|+.
T Consensus 61 ~~~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~ 111 (187)
T cd03137 61 ALAAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAE 111 (187)
T ss_pred ccCCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHH
Confidence 45688999999997653 2467888899888899999999999999864
No 129
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=95.40 E-value=0.067 Score=53.60 Aligned_cols=168 Identities=17% Similarity=0.127 Sum_probs=98.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtm~p~~hgev~v~~dg~e~dldlg~yerf~~~ 80 (564)
||-|||||- =.+.||=.+++.|.+.|+.+|++|..+| |.++|-.- ++ ++..|-|.-.+.+..+.
T Consensus 2 ~~~ifIt~t-~t~vGKT~vt~~L~~~l~~~g~~v~~~K-------------Pi~~g~~~-~~-~~~~~~D~~~l~~~~~~ 65 (231)
T PRK12374 2 LKRFFITGT-DTSVGKTVVSRALLQALASQGKTVAGYK-------------PVAKGSKE-TP-EGLRNKDALVLQSVSSI 65 (231)
T ss_pred CceEEEEEC-CCCCCHHHHHHHHHHHHHHCCCeEEEEC-------------ccccCCcc-CC-CCCchHHHHHHHHhcCC
Confidence 467899874 3889999999999999999999998877 78888532 22 23345444445555554
Q ss_pred CCCCCC-c---ccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccc--c
Q 008476 81 KLTRDN-N---ITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGD--I 154 (564)
Q Consensus 81 ~~~~~~-~---~t~g~iy~~vi~ker~g~ylg~tvqviph~t~~i~~~i~~~~~~p~~~~~~~~d~~i~e~ggtvgd--i 154 (564)
+.+-+. | ++.. ...++.+ +.+ -.++|.+++++++ .+.|++|||=-|-+.. -
T Consensus 66 ~~~~~~~~p~~~~~~------~a~~~~~-------~~i--~~~~i~~~~~~l~--------~~~D~VlVEGaGgl~~p~~ 122 (231)
T PRK12374 66 ELPYEAVNPIALSEE------ESSVAHS-------CPI--NYTLMSNGLANLS--------EKVDHVVVEGTGGWRSLMN 122 (231)
T ss_pred CCCHHhccCeecCCC------cChHHcC-------CcC--CHHHHHHHHHHHH--------hhCCEEEEECCCCcceecc
Confidence 432111 1 1111 1111222 111 2357888887764 3789999998772221 0
Q ss_pred CcchHHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhhhhhhhCCCcccEEEEeeCC
Q 008476 155 ESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTV 220 (564)
Q Consensus 155 es~pf~ea~rq~~~~~~~~~~~~~h~~~vp~~~~~~e~ktkptq~svk~l~s~Gi~pd~lv~R~~~ 220 (564)
+...+.+.++++ +-. ++.|- =...|. .--|.-+++.+++.|+..-++|+-...
T Consensus 123 ~~~~~~d~~~~~----~~p-vilV~------~~~lg~--in~~lLt~~~l~~~~~~~~gvV~N~~~ 175 (231)
T PRK12374 123 DLRPLSEWVVQE----QLP-VLMVV------GIQEGC--INHALLTAQAIANDGLPLIGWVANRIN 175 (231)
T ss_pred CcccHHHHHHHh----CCC-EEEEE------CCCcCh--HHHHHHHHHHHHhCCCcEEEEEEeCcc
Confidence 112344444443 211 22221 001233 234556778889999999999985443
No 130
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=95.34 E-value=0.024 Score=57.22 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=39.9
Q ss_pred ccCCCEEEeCCCCCC----CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 008476 360 LKGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (564)
Q Consensus 360 L~~~DGIllpGGfG~----r~~eg~i~~ir~a~e~~iPiLGICLGmQll~ia 407 (564)
.+++|+|++|||.|. +..+...++++.+.++++|+-.||-|-++|.-+
T Consensus 92 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 92 PDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred HhhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 468999999999764 233567889999999999999999999988643
No 131
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=95.12 E-value=0.31 Score=57.04 Aligned_cols=91 Identities=19% Similarity=0.193 Sum_probs=59.7
Q ss_pred CceEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 008476 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (564)
Q Consensus 296 ~~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r 375 (564)
..+||||+-.- ....+..+.-++..+|++.. + +.-.|+.... -.|+++-||.++|||...
T Consensus 1057 ~~PkVAilREe--GvNg~rEMa~af~~AgF~~~---D---VtmtDlL~G~------------~~ld~frGlaf~GGFSYa 1116 (1320)
T KOG1907|consen 1057 TAPKVAILREE--GVNGDREMAAAFYAAGFETV---D---VTMTDLLAGR------------HHLDDFRGLAFCGGFSYA 1116 (1320)
T ss_pred CCCceEEeecc--ccccHHHHHHHHHHcCCcee---e---eeeehhhcCc------------eeHhHhcceeeecCcchH
Confidence 35799999433 34578899999999999861 1 2223443322 236788999999998653
Q ss_pred -------ch-------hHHHHHHHHHH-HcCCCEEEEehhHHHHHH
Q 008476 376 -------GV-------QGKILAAKYAR-EHRIPYLGICLGMQVAVI 406 (564)
Q Consensus 376 -------~~-------eg~i~~ir~a~-e~~iPiLGICLGmQll~i 406 (564)
|| +........++ ..+.=-||||-|-|+|+.
T Consensus 1117 DvLgSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~ 1162 (1320)
T KOG1907|consen 1117 DVLGSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNGCQLMSR 1162 (1320)
T ss_pred hhhccccchhhheeeChhHHHHHHHHhcCCCceeeecccHhHHHHH
Confidence 22 33333333333 335667999999999974
No 132
>PRK13768 GTPase; Provisional
Probab=94.99 E-value=0.16 Score=51.85 Aligned_cols=39 Identities=26% Similarity=0.429 Sum_probs=34.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (564)
+.|+|+|- +|.||-..+..+...|+.+|.+|.++.+||-
T Consensus 3 ~~i~v~G~--~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 3 YIVFFLGT--AGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred EEEEEECC--CCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 55666665 9999999999999999999999999999984
No 133
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=94.97 E-value=0.017 Score=53.70 Aligned_cols=47 Identities=28% Similarity=0.393 Sum_probs=36.4
Q ss_pred ccCCCEEEeCCCCCC----Cch-hHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008476 360 LKGADGILVPGGFGN----RGV-QGKILAAKYAREHRIPYLGICLGMQVAVI 406 (564)
Q Consensus 360 L~~~DGIllpGGfG~----r~~-eg~i~~ir~a~e~~iPiLGICLGmQll~i 406 (564)
..++|+|++|||.+. +.. +.....++++.++++|+.+||-|-.+|+.
T Consensus 35 ~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~ 86 (147)
T PF01965_consen 35 PSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAA 86 (147)
T ss_dssp GGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHH
T ss_pred hhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhc
Confidence 356899999999883 212 56788999999999999999999977753
No 134
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=94.85 E-value=0.13 Score=48.71 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=37.8
Q ss_pred ccCCCEEEeCCCCCCC----chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008476 360 LKGADGILVPGGFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (564)
Q Consensus 360 L~~~DGIllpGGfG~r----~~eg~i~~ir~a~e~~iPiLGICLGmQll~i 406 (564)
..++|.|+||||.+.. ..+..+..++.+.++++|+.+||-|-.+|+-
T Consensus 61 ~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~ 111 (179)
T TIGR01383 61 LEEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLA 111 (179)
T ss_pred cccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHh
Confidence 4679999999986421 2345778888888999999999999999864
No 135
>PRK04155 chaperone protein HchA; Provisional
Probab=94.71 E-value=0.045 Score=57.12 Aligned_cols=46 Identities=17% Similarity=0.344 Sum_probs=39.0
Q ss_pred ccCCCEEEeCCCCCC----CchhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 008476 360 LKGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (564)
Q Consensus 360 L~~~DGIllpGGfG~----r~~eg~i~~ir~a~e~~iPiLGICLGmQll~ 405 (564)
.+++|+|+||||.|. +..+...++++++.++++|+..||-|-++|.
T Consensus 145 ~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll 194 (287)
T PRK04155 145 DSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALL 194 (287)
T ss_pred cccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHH
Confidence 468999999999775 3346688899999999999999999998764
No 136
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.61 E-value=0.089 Score=43.41 Aligned_cols=33 Identities=36% Similarity=0.513 Sum_probs=30.1
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 008476 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (564)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k 38 (564)
|+++|.- |.||-.+++.+...|++.|++|..++
T Consensus 2 ~~~~g~~--G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKG--GVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCC--CCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 6677766 99999999999999999999999888
No 137
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=94.47 E-value=0.84 Score=45.54 Aligned_cols=40 Identities=30% Similarity=0.506 Sum_probs=34.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (564)
|-|.|+++ =-|.||=.+|+.++..|..+|++|-++-+||-
T Consensus 2 ~ii~v~s~-kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~ 41 (261)
T TIGR01968 2 RVIVITSG-KGGVGKTTTTANLGTALARLGKKVVLIDADIG 41 (261)
T ss_pred eEEEEecC-CCCccHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 55666654 46889999999999999999999999999984
No 138
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=94.44 E-value=0.056 Score=53.93 Aligned_cols=153 Identities=22% Similarity=0.225 Sum_probs=79.7
Q ss_pred cCCCEEEeCCCCCCCc------hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh----cccc--ccccCCcccccCCCCC
Q 008476 361 KGADGILVPGGFGNRG------VQGKILAAKYAREHRIPYLGICLGMQVAVIEF----ARSV--LNLRDANSTEFDPNTK 428 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~------~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~----g~~v--lgl~dA~s~Ef~~~~~ 428 (564)
+.+|-+++.||-.... ...+-..++.+.++++|+|.||-|.|+|.-.+ |.++ +|+-|..+..
T Consensus 51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~yY~~a~G~ri~GlGiLd~~T~~------ 124 (250)
T COG3442 51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQYYETASGTRIDGLGILDHYTEN------ 124 (250)
T ss_pred ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccceeecCCCcEeecccceeeeecc------
Confidence 5778777777643221 12345678889999999999999999997543 2222 2222221110
Q ss_pred CCeeeecCCCcccccCCcee-ecceeeEeecCCchhhhccCCceeEeeeeceeeeeChhhhhhhccCCeEEEEEeCCCC-
Q 008476 429 NPCVIFMPEGSKTHMGGTMR-LGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQ- 506 (564)
Q Consensus 429 ~~vi~~m~e~~~~~~Ggtmr-lG~~~v~l~~~~s~~~~iyg~~~~I~erh~HrYeVn~~~v~~l~~~gl~~~a~s~dg~- 506 (564)
-.+-| .|+- .+.+ ++....++++-.=.|.|.-|=.++|+ .++-|-.+.+.-+++.
T Consensus 125 ---------------~~~~R~IGdi--v~~~--~~~~e~~~et~~GFENH~GrT~L~~d----~~pLG~Vv~G~GNn~eD 181 (250)
T COG3442 125 ---------------PQTKRFIGDI--VIEN--TLAGEEFGETLVGFENHGGRTYLGPD----VKPLGKVVYGYGNNGED 181 (250)
T ss_pred ---------------ccccceeeeE--Eeec--ccchHHhCCeeeeeecCCCceecCCC----CccceeEEEccCCCccc
Confidence 00111 1221 1111 11112222121114666655444433 2344666666543321
Q ss_pred eEEEEEeCCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhc
Q 008476 507 RMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGNISHLYF 548 (564)
Q Consensus 507 ~vE~ie~~~~pffiGvQFHPE~ss~p~~p~pLF~~Fv~aa~~ 548 (564)
--|++.+++ .+|+=||==..|+- -.|-+.++..|.+
T Consensus 182 ~~eG~~ykn---~~aTY~HGP~L~rN---p~LAd~Ll~tAl~ 217 (250)
T COG3442 182 GTEGAHYKN---VIATYFHGPILSRN---PELADRLLTTALE 217 (250)
T ss_pred cccceeeee---eEEEeecCccccCC---HHHHHHHHHHHHH
Confidence 257777665 67999995444442 1466777777655
No 139
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.23 E-value=0.27 Score=52.44 Aligned_cols=62 Identities=24% Similarity=0.396 Sum_probs=47.7
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC-------CCCCCCc-cccceEEEccCCcc
Q 008476 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT-------DAGTMSP-FEHGEVFVLDDGGE 66 (564)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~-------d~gtm~p-~~hgev~v~~dg~e 66 (564)
.|-|||- +|-||=.....+...|+.+|++|.++.+||.-.+ |.-.|.. .+|+.||+-..++.
T Consensus 58 ~igi~G~--~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~ 127 (332)
T PRK09435 58 RIGITGV--PGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSS 127 (332)
T ss_pred EEEEECC--CCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCc
Confidence 5677875 8999999999999999999999999999998665 4444543 35555666655543
No 140
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=94.15 E-value=0.077 Score=53.62 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=38.7
Q ss_pred ccCCCEEEeCCCCCCC----chhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 008476 360 LKGADGILVPGGFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (564)
Q Consensus 360 L~~~DGIllpGGfG~r----~~eg~i~~ir~a~e~~iPiLGICLGmQll~ 405 (564)
.+++|+|++|||.|.. ..+...++++++.++++|+-.||-|-+++.
T Consensus 94 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~ 143 (232)
T cd03148 94 DSEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFL 143 (232)
T ss_pred hhhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHH
Confidence 3589999999996653 346678899999999999999999998774
No 141
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=94.11 E-value=0.25 Score=48.70 Aligned_cols=106 Identities=17% Similarity=0.049 Sum_probs=64.9
Q ss_pred HHHHHHhhhcCCCCceEEEEEeccCCC-c-chHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhc
Q 008476 283 EWTSRAEICDGLHEPVRIAMVGKYTGL-S-DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360 (564)
Q Consensus 283 ~w~~~~~~~~~~~~~~~IavVGkY~~~-~-Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L 360 (564)
.++.+..... +...+|+++. .... . +....+.++++..|+.+.. +..++. ..+ ....+.+
T Consensus 17 ~~~~~~~~~~--~~~~~i~~ip-tA~~~~~~~~~~~~~~~~~lG~~~~~---~~~~~~--~~~----------~~~~~~l 78 (210)
T cd03129 17 ILQDFLARAG--GAGARVLFIP-TASGDRDEYGEEYRAAFERLGVEVVH---LLLIDT--AND----------PDVVARL 78 (210)
T ss_pred HHHHHHHHcC--CCCCeEEEEe-CCCCChHHHHHHHHHHHHHcCCceEE---EeccCC--CCC----------HHHHHHH
Confidence 3445544432 2457899994 4322 1 2244688889999988643 222221 100 1234678
Q ss_pred cCCCEEEeCCCCCCCc---h--hHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008476 361 KGADGILVPGGFGNRG---V--QGKILAAKYAREHRIPYLGICLGMQVAVI 406 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~---~--eg~i~~ir~a~e~~iPiLGICLGmQll~i 406 (564)
.++|+|+++||--.+- + .+..+.++....++.|+.|+|-|..++.-
T Consensus 79 ~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~~ 129 (210)
T cd03129 79 LEADGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAAVMGE 129 (210)
T ss_pred hhCCEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhhh
Confidence 9999999999632221 1 12455566555589999999999999963
No 142
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=94.03 E-value=0.087 Score=50.04 Aligned_cols=46 Identities=17% Similarity=0.162 Sum_probs=38.2
Q ss_pred cCCCEEEeCCCCCC--CchhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008476 361 KGADGILVPGGFGN--RGVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (564)
Q Consensus 361 ~~~DGIllpGGfG~--r~~eg~i~~ir~a~e~~iPiLGICLGmQll~i 406 (564)
.++|.|+||||+.. ...+...+.++.+.+++.++.+||-|-++|+-
T Consensus 59 ~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 106 (170)
T cd03140 59 EDYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVAAICGATLALAR 106 (170)
T ss_pred hHccEEEEcCCcccccCCcHHHHHHHHHHHHcCCEEEEEChHHHHHHH
Confidence 57899999999753 22356788899999999999999999999864
No 143
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=93.96 E-value=0.075 Score=53.04 Aligned_cols=47 Identities=19% Similarity=0.219 Sum_probs=39.2
Q ss_pred ccCCCEEEeCCCCCCC----chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008476 360 LKGADGILVPGGFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (564)
Q Consensus 360 L~~~DGIllpGGfG~r----~~eg~i~~ir~a~e~~iPiLGICLGmQll~i 406 (564)
++++|+|+||||++.. ..+...+.++.+.++++|+.+||-|-++|+-
T Consensus 88 ~~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ 138 (221)
T cd03141 88 PSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLN 138 (221)
T ss_pred HhHceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHh
Confidence 3578999999997642 2366888999999999999999999998864
No 144
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=93.60 E-value=0.13 Score=49.57 Aligned_cols=47 Identities=17% Similarity=0.216 Sum_probs=38.2
Q ss_pred ccCCCEEEeCCCCCCC------chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008476 360 LKGADGILVPGGFGNR------GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (564)
Q Consensus 360 L~~~DGIllpGGfG~r------~~eg~i~~ir~a~e~~iPiLGICLGmQll~i 406 (564)
..++|.|+||||.+.. ..+..++.++.+.+++.++.+||-|..+|+-
T Consensus 67 ~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 119 (195)
T cd03138 67 VPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAE 119 (195)
T ss_pred cCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHH
Confidence 4678999999986542 2356778888888999999999999999863
No 145
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=93.58 E-value=0.1 Score=48.50 Aligned_cols=46 Identities=22% Similarity=0.264 Sum_probs=37.9
Q ss_pred cCCCEEEeCCCCCC-C---chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008476 361 KGADGILVPGGFGN-R---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (564)
Q Consensus 361 ~~~DGIllpGGfG~-r---~~eg~i~~ir~a~e~~iPiLGICLGmQll~i 406 (564)
.++|.|+||||++. . ..+..++.++.+.++++++.+||-|-.+|+-
T Consensus 59 ~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~ 108 (163)
T cd03135 59 DDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAK 108 (163)
T ss_pred CCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchhHHHHHH
Confidence 68999999999832 2 2356778888888999999999999999864
No 146
>PRK14974 cell division protein FtsY; Provisional
Probab=93.51 E-value=1.2 Score=47.69 Aligned_cols=39 Identities=28% Similarity=0.446 Sum_probs=35.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (564)
+.|.++| ..|.||=.+++.++..|+.+|++|.++-.|+|
T Consensus 141 ~vi~~~G--~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 141 VVIVFVG--VNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred eEEEEEc--CCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 4688888 88999999999999999999999999888877
No 147
>PRK11249 katE hydroperoxidase II; Provisional
Probab=93.35 E-value=0.45 Score=55.65 Aligned_cols=105 Identities=20% Similarity=0.156 Sum_probs=62.8
Q ss_pred CceEEEEEeccCCCc-chHHHHHHHHHHcCCcceeee-EEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCC
Q 008476 296 EPVRIAMVGKYTGLS-DAYLSILKALLHASVDLRKKL-VIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 373 (564)
Q Consensus 296 ~~~~IavVGkY~~~~-Day~SIi~aL~~aG~~v~v~v-~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG 373 (564)
++.||||+- +.... ..+..+.++|+.+|+.+.+.= ..-.+.+.+ ...+..+ ..+++. ....+|+|+||||..
T Consensus 596 ~gRKIaILV-aDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~--G~~I~aD-~t~~~~--~Sv~FDAVvVPGG~~ 669 (752)
T PRK11249 596 KGRKVAILL-NDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADD--GTVLPIA-ATFAGA--PSLTFDAVIVPGGKA 669 (752)
T ss_pred cccEEEEEe-cCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCC--CCEEecc-eeeccC--CccCCCEEEECCCch
Confidence 457899883 43333 357799999999998664410 001111100 0000000 001000 012589999999864
Q ss_pred CCc----hhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008476 374 NRG----VQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (564)
Q Consensus 374 ~r~----~eg~i~~ir~a~e~~iPiLGICLGmQll~i 406 (564)
... ....+..++.+.++.+|+..||-|.++|+-
T Consensus 670 ~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLaa 706 (752)
T PRK11249 670 NIADLADNGDARYYLLEAYKHLKPIALAGDARKLKAA 706 (752)
T ss_pred hHHHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHHh
Confidence 422 245778899999999999999999999963
No 148
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=93.18 E-value=0.62 Score=54.29 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=33.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k 38 (564)
||-|||+| .=++.||=.++..|.+.|+.+|++|...|
T Consensus 2 ~k~l~I~~-T~t~~GKT~vslgL~~~L~~~G~~Vg~fK 38 (684)
T PRK05632 2 SRSIYLAP-TGTGVGLTSVSLGLMRALERKGVKVGFFK 38 (684)
T ss_pred CcEEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEeC
Confidence 57888884 56899999999999999999999999999
No 149
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=92.91 E-value=0.37 Score=49.13 Aligned_cols=39 Identities=28% Similarity=0.540 Sum_probs=36.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (564)
|+||++|. .|.||=.+|++++..+...|.||-++-.||-
T Consensus 1 ~~~~~~gk--gG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 1 RYIFFGGK--GGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred CEEEEECC--CCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 57888886 9999999999999999999999999999994
No 150
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.83 E-value=0.63 Score=48.57 Aligned_cols=44 Identities=32% Similarity=0.488 Sum_probs=38.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (564)
++.|.|||. .|-||=..+..++.+|..+|++|.++.+||+-+.-
T Consensus 34 ~~~i~i~G~--~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~ 77 (300)
T TIGR00750 34 AHRVGITGT--PGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFT 77 (300)
T ss_pred ceEEEEECC--CCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcc
Confidence 367888975 89999999999999999999999999999975443
No 151
>PRK10867 signal recognition particle protein; Provisional
Probab=92.72 E-value=1.7 Score=48.08 Aligned_cols=39 Identities=28% Similarity=0.453 Sum_probs=35.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHC-CCeeEEeeeccc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKAC-GLRVTCIKIDPY 42 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~-g~~v~~~k~dpy 42 (564)
+.|+++| ..|.||=.+++.++..|+.+ |.+|.++-.|+|
T Consensus 101 ~vI~~vG--~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 101 TVIMMVG--LQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred EEEEEEC--CCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 4677887 89999999999999999998 999999999997
No 152
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.42 E-value=2.6 Score=43.59 Aligned_cols=39 Identities=31% Similarity=0.431 Sum_probs=36.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (564)
+.|.++| ..|.||=.+++.|+..|+..|++|.++-.|+|
T Consensus 73 ~vi~l~G--~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 73 NVILFVG--VNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred eEEEEEC--CCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 6788885 89999999999999999999999999999985
No 153
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=92.20 E-value=0.19 Score=47.70 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=37.2
Q ss_pred ccCCCEEEeCCCCCCC---chhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 008476 360 LKGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (564)
Q Consensus 360 L~~~DGIllpGGfG~r---~~eg~i~~ir~a~e~~iPiLGICLGmQll~ 405 (564)
...+|.|+||||.+.. ..+..+..++.+.++++|+.+||-|.-+|+
T Consensus 60 ~~~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La 108 (183)
T cd03139 60 PPDLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLA 108 (183)
T ss_pred CCCCCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHH
Confidence 4578999999997643 235577888888889999999999998775
No 154
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=91.97 E-value=0.25 Score=47.29 Aligned_cols=46 Identities=22% Similarity=0.235 Sum_probs=38.5
Q ss_pred ccCCCEEEeCCCCCCC--chhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 008476 360 LKGADGILVPGGFGNR--GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (564)
Q Consensus 360 L~~~DGIllpGGfG~r--~~eg~i~~ir~a~e~~iPiLGICLGmQll~ 405 (564)
..++|.|+||||++.. ..+..++.++.+.++++.+.+||-|..+|+
T Consensus 62 ~~~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La 109 (185)
T cd03136 62 APPLDYLFVVGGLGARRAVTPALLAWLRRAARRGVALGGIDTGAFLLA 109 (185)
T ss_pred cCCCCEEEEeCCCCccccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHH
Confidence 4578999999986643 236688889999899999999999999986
No 155
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=91.55 E-value=0.98 Score=44.83 Aligned_cols=41 Identities=32% Similarity=0.495 Sum_probs=35.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (564)
||.|.|+++ =.|.||=.+|+.++..|..+|+||-++-+||.
T Consensus 1 m~iI~v~s~-KGGvGKTt~a~nla~~la~~g~~VlliD~D~q 41 (246)
T TIGR03371 1 MKVIAIVGV-KGGVGKTTLTANLASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred CcEEEEEeC-CCCccHHHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 576666543 46889999999999999999999999999995
No 156
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=91.26 E-value=0.22 Score=46.80 Aligned_cols=48 Identities=19% Similarity=0.150 Sum_probs=37.3
Q ss_pred hccCCCEEEeCCCCCC---CchhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008476 359 LLKGADGILVPGGFGN---RGVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (564)
Q Consensus 359 ~L~~~DGIllpGGfG~---r~~eg~i~~ir~a~e~~iPiLGICLGmQll~i 406 (564)
...++|.|+||||++. ...+..+..++.+.+++.++.+||-|..+|+-
T Consensus 58 ~~~~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 108 (166)
T PF13278_consen 58 DAPDFDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAE 108 (166)
T ss_dssp CCSCCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHH
T ss_pred hcccCCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhh
Confidence 3568899999999982 22356677787777889999999999999964
No 157
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=90.86 E-value=1.4 Score=41.25 Aligned_cols=38 Identities=34% Similarity=0.483 Sum_probs=33.1
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 008476 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (564)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyl 43 (564)
|.++|. +|-||=..+..++..|+.+|.+|.++..||.-
T Consensus 2 i~~~G~--~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~ 39 (148)
T cd03114 2 IGITGV--PGAGKSTLIDALITALRARGKRVAVLAIDPSS 39 (148)
T ss_pred EEEECC--CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC
Confidence 455664 78899999999999999999999999999843
No 158
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=90.59 E-value=1.2 Score=44.20 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=30.7
Q ss_pred CccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 008476 9 GVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (564)
Q Consensus 9 gv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (564)
+-=.|.||=.+|+.++..|..+|++|-++.+||.
T Consensus 7 ~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 40 (251)
T TIGR01969 7 SGKGGTGKTTITANLGVALAKLGKKVLALDADIT 40 (251)
T ss_pred cCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3346789999999999999999999999999994
No 159
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.40 E-value=4.8 Score=44.26 Aligned_cols=143 Identities=19% Similarity=0.238 Sum_probs=87.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCC
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtm~p~~hgev~v~~dg~e~dldlg~yerf~~~~ 81 (564)
+.|.+.|- .|.||=.+++.|+..|..+|++|.++-.|||- +|..+-.
T Consensus 242 ~vI~LVGp--tGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R---iaAvEQL---------------------------- 288 (436)
T PRK11889 242 QTIALIGP--TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR---IGTVQQL---------------------------- 288 (436)
T ss_pred cEEEEECC--CCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc---hHHHHHH----------------------------
Confidence 45667776 99999999999999999999999999999875 1111110
Q ss_pred CCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHH
Q 008476 82 LTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIE 161 (564)
Q Consensus 82 ~~~~~~~t~g~iy~~vi~ker~g~ylg~tvqviph~t~~i~~~i~~~~~~p~~~~~~~~d~~i~e~ggtvgdies~pf~e 161 (564)
+.|. +-+|-.|-++. -.+++++.|...+. ..+.|+|||...|.-- -....++
T Consensus 289 ----------k~ya---------e~lgipv~v~~-d~~~L~~aL~~lk~------~~~~DvVLIDTaGRs~--kd~~lm~ 340 (436)
T PRK11889 289 ----------QDYV---------KTIGFEVIAVR-DEAAMTRALTYFKE------EARVDYILIDTAGKNY--RASETVE 340 (436)
T ss_pred ----------HHHh---------hhcCCcEEecC-CHHHHHHHHHHHHh------ccCCCEEEEeCccccC--cCHHHHH
Confidence 0111 11343333222 23567777777652 2368999999988843 2334556
Q ss_pred HHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhhhhhhhCCCcccEEEE
Q 008476 162 ALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILAC 216 (564)
Q Consensus 162 a~rq~~~~~~~~~~~~~h~~~vp~~~~~~e~ktkptq~svk~l~s~Gi~pd~lv~ 216 (564)
.++++.....+..++++ +++ -.|.+-....++.++. +.+|.+|.
T Consensus 341 EL~~~lk~~~PdevlLV-------LsA--Ttk~~d~~~i~~~F~~--~~idglI~ 384 (436)
T PRK11889 341 EMIETMGQVEPDYICLT-------LSA--SMKSKDMIEIITNFKD--IHIDGIVF 384 (436)
T ss_pred HHHHHHhhcCCCeEEEE-------ECC--ccChHHHHHHHHHhcC--CCCCEEEE
Confidence 66666555444433222 433 2333344566777766 45677776
No 160
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=89.64 E-value=5.9 Score=37.29 Aligned_cols=37 Identities=35% Similarity=0.650 Sum_probs=32.2
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 008476 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (564)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (564)
|.++| ..|-||=.+++.+...|..+|.+|.++-.|+|
T Consensus 3 ~~~~G--~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVG--LQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 45565 46889999999999999999999999999984
No 161
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=89.18 E-value=1.8 Score=40.49 Aligned_cols=155 Identities=19% Similarity=0.242 Sum_probs=80.5
Q ss_pred ccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCCCCCccc
Q 008476 10 VVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLTRDNNIT 89 (564)
Q Consensus 10 v~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtm~p~~hgev~v~~dg~e~dldlg~yerf~~~~~~~~~~~t 89 (564)
.-.+.||=.+++.|++.|+.+|+||-.+| |.+||- + . .|-|.-.-.+.+.... +.+..
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~k-------------P~~~~~----~-~--~d~d~~~i~~~~~~~~--~~~~~ 62 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYYK-------------PVQTGI----E-K--TNSDALLLQNISGTAL--DWDEV 62 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEEE-------------eeeeCC----C-C--CchHHHHHHHHcCCCC--chhcc
Confidence 46789999999999999999999998854 666652 0 0 1222110111111111 11111
Q ss_pred chHhhH-----HHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHHHHH
Q 008476 90 TGKIYQ-----SVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALG 164 (564)
Q Consensus 90 ~g~iy~-----~vi~ker~g~ylg~tvqviph~t~~i~~~i~~~~~~p~~~~~~~~d~~i~e~ggtvgdies~pf~ea~r 164 (564)
.+-.|. .+....+ + + |....+|++.+.+++ .++|++|||-.|.... .+..--...
T Consensus 63 ~~~~~~~~~~p~~~~~~~-~----~-----~~~~~~i~~~~~~l~--------~~~D~viid~~g~~~~--~~~~~~~~~ 122 (166)
T TIGR00347 63 NPYAFALPLSPHIAADQE-G----R-----PIDLEELSKHLRTLE--------QKYDFVLVEGAGGLCV--PITEEYTTA 122 (166)
T ss_pred CCeeeCCCCChHHHHHHh-C----C-----CCCHHHHHHHHHHHH--------hcCCEEEEEcCCcccc--CCCCCCcHH
Confidence 110010 1111110 0 0 223346777787764 3689999999885443 111111123
Q ss_pred HhhhhcCCCCEEEEEeeeeeeecC-CCccccCCchhhhhhhhhCCCcccEEEE
Q 008476 165 QFSYRVGPGNFCLIHVSLVPVLNV-VGEQKTKPTQHSVRGLRGQGLTPNILAC 216 (564)
Q Consensus 165 q~~~~~~~~~~~~~h~~~vp~~~~-~~e~ktkptq~svk~l~s~Gi~pd~lv~ 216 (564)
++-.+++-. ++.|= .. .++ -.=++-+.+.|++.|+..-++|+
T Consensus 123 dl~~~~~~~-vilV~-------~~~~~~--~~~~~~~~~~l~~~~~~i~gvv~ 165 (166)
T TIGR00347 123 DLIKLLQLP-VILVV-------RVKLGT--INHTLLTVEHARQTGLTLAGVIL 165 (166)
T ss_pred HHHHHhCCC-EEEEE-------CCCCcH--HHHHHHHHHHHHHCCCCeEEEEe
Confidence 344444422 33331 11 122 23456677788899998888875
No 162
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=89.14 E-value=8 Score=39.84 Aligned_cols=195 Identities=16% Similarity=0.220 Sum_probs=102.9
Q ss_pred CceEEEEEeccCCCcchHH-HHHHHHHHcCC-cceeeeEEEEecCCCcccccccCCchhhhHHHHhc--cCCCEEEeCCC
Q 008476 296 EPVRIAMVGKYTGLSDAYL-SILKALLHASV-DLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGG 371 (564)
Q Consensus 296 ~~~~IavVGkY~~~~Day~-SIi~aL~~aG~-~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L--~~~DGIllpGG 371 (564)
+..+|+|+ ... -.+. -=.+-|+..|. .+.|.+.+..+++..-.....+.--..|... +.. .++||+||+|.
T Consensus 34 RPL~Ilil-NLM---P~Ki~TE~Q~lRLL~nsPLQV~itll~~~sh~~KnTp~eHl~~FY~tf-eeVk~~~FDG~IiTGA 108 (307)
T COG1897 34 RPLKILIL-NLM---PKKIETETQILRLLGNSPLQVDITLLRIDSHESKNTPAEHLNSFYCTF-EEVKDQKFDGLIITGA 108 (307)
T ss_pred ccceeeee-ecC---chhHHHHHHHHHHhcCCCceEEEEEEEecCcCCCCCcHHHHHHHhhcH-HHHhhcccCceEEeCC
Confidence 35789998 332 1222 11223444443 3355556666665433211100001123333 333 58999999998
Q ss_pred CCCC-------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCcccccCCCCCCCeeeecCCCcccccC
Q 008476 372 FGNR-------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMG 444 (564)
Q Consensus 372 fG~r-------~~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~vlgl~dA~s~Ef~~~~~~~vi~~m~e~~~~~~G 444 (564)
|=.. -++.+.+.+.+...+=--.|=||.|.|.....+ +|++.- + |+++-
T Consensus 109 Pve~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~----yGv~K~---~------------l~~Kl----- 164 (307)
T COG1897 109 PVELLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYF----YGVPKY---T------------LPEKL----- 164 (307)
T ss_pred cccccCchhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHH----cCCCcc---c------------cchhh-----
Confidence 6432 146677788888887788999999999986553 222211 0 11100
Q ss_pred CceeecceeeE-eecCCchhhhccCCceeEeeeeceee-eeChhhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCcEEEE
Q 008476 445 GTMRLGSRRTY-FQIKDCKSAKLYGNRTFIDERHRHRY-EVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGV 522 (564)
Q Consensus 445 gtmrlG~~~v~-l~~~~s~~~~iyg~~~~I~erh~HrY-eVn~~~v~~l~~~gl~~~a~s~dg~~vE~ie~~~~pffiGv 522 (564)
.|-++-. +.+. +++-+=+. +....-| -|| +++.+.+.+ ..++++++.|.... +-.+..++...+ =+
T Consensus 165 ----~GVy~h~~l~p~-~~l~rGfd--d~f~~Ph-SR~t~~~~e~i~~--~~~LeIL~es~e~G-~~l~a~k~~r~i-fv 232 (307)
T COG1897 165 ----SGVYKHDILSPH-SLLTRGFD--DSFLAPH-SRYTDVPKEDILA--VPDLEILAESKEAG-VYLLASKDGRNI-FV 232 (307)
T ss_pred ----hceeeccccCcc-chhhccCC--ccccCcc-cccccCCHHHHhh--CCCceeeecccccc-eEEEecCCCCeE-EE
Confidence 1111111 2233 22222121 1222233 233 466666654 36789988887655 777777777654 46
Q ss_pred cccCCCcCC
Q 008476 523 QFHPEYKSR 531 (564)
Q Consensus 523 QFHPE~ss~ 531 (564)
--|||+...
T Consensus 233 ~gH~EYD~~ 241 (307)
T COG1897 233 TGHPEYDAT 241 (307)
T ss_pred eCCcchhhh
Confidence 679998765
No 163
>PHA02518 ParA-like protein; Provisional
Probab=89.11 E-value=2.2 Score=41.17 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=30.2
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 008476 11 VSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (564)
Q Consensus 11 ~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyl 43 (564)
=-|.||=.+|+.|+..|..+|++|.++-+||.-
T Consensus 9 KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~ 41 (211)
T PHA02518 9 KGGAGKTTVATNLASWLHADGHKVLLVDLDPQG 41 (211)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 346799999999999999999999999999974
No 164
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=88.73 E-value=0.85 Score=46.01 Aligned_cols=184 Identities=20% Similarity=0.284 Sum_probs=116.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtm~p~~hgev~v~~dg~e~dldlg~yerf~~~ 80 (564)
||-+|||| .=-++||=++++.+...|+.+|++|...| |.|=|. +....+=|.=.+.|+.++
T Consensus 2 ~~~~fVtG-TDT~VGKTv~S~aL~~~l~~~g~~~~~~K-------------PVqsG~-----~~~~~~~D~~~l~~~~~~ 62 (223)
T COG0132 2 MKRFFVTG-TDTGVGKTVVSAALAQALKQQGYSVAGYK-------------PVQTGS-----EETAENSDALVLQRLSGL 62 (223)
T ss_pred CceEEEEe-CCCCccHHHHHHHHHHHHHhCCCeeEEEC-------------ceeeCC-----CCCCCCchHHHHHHhcCC
Confidence 68899997 45789999999999999999999998877 777664 111114677778888888
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccc--cCcch
Q 008476 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGD--IESMP 158 (564)
Q Consensus 81 ~~~~~~~~t~g~iy~~vi~ker~g~ylg~tvqviph~t~~i~~~i~~~~~~p~~~~~~~~d~~i~e~ggtvgd--ies~p 158 (564)
.++. -.++--.|+.-..--..-+.-|+++. .++|..+..+. ..++|.+|||=-|=+.= -|...
T Consensus 63 ~~~~--~~~~py~f~~P~sPhlAa~~eg~~I~-----~~~l~~~l~~l--------~~~~d~vlVEGAGGl~vPl~~~~~ 127 (223)
T COG0132 63 DLSY--ELINPYRFKEPLSPHLAAELEGRTID-----LEKLSQGLRQL--------LKKYDLVLVEGAGGLLVPLTEEYT 127 (223)
T ss_pred Cccc--ccccceecCCCCCcHHHHhhcCCccc-----HHHHHHHHHhh--------hcccCEEEEeCCCceeeecCCccc
Confidence 7662 22222333332222222222355522 34455554444 34889999996554310 12367
Q ss_pred HHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhhhhhhhCCCcccEEEEeeCCCCCcchhcccc
Q 008476 159 FIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLS 231 (564)
Q Consensus 159 f~ea~rq~~~~~~~~~~~~~h~~~vp~~~~~~e~ktkptq~svk~l~s~Gi~pd~lv~R~~~~l~~~~r~kis 231 (564)
|..=++|++..+ ++.+++ .| |-.- -|=-|++.+++.||..-++|.-+..+.+.+....+.
T Consensus 128 ~~D~~~~~~lpv----ILV~~~----~L---GtIN--HtlLt~eal~~~gl~l~G~I~n~~~~~~~~~~~~~~ 187 (223)
T COG0132 128 FADLAVQLQLPV----ILVVGI----KL---GTIN--HTLLTVEALRARGLPLAGWVANGINPELDHYAEINA 187 (223)
T ss_pred HHHHHHHcCCCE----EEEecC----Cc---cHHH--HHHHHHHHHHHCCCCEEEEEEccCCCchhHHHHHHH
Confidence 888888887653 222221 23 2221 355688999999999999999888777666544443
No 165
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=88.33 E-value=0.71 Score=48.32 Aligned_cols=49 Identities=29% Similarity=0.348 Sum_probs=38.5
Q ss_pred HhccCCCEEEeCCCCCCC--chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008476 358 KLLKGADGILVPGGFGNR--GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (564)
Q Consensus 358 ~~L~~~DGIllpGGfG~r--~~eg~i~~ir~a~e~~iPiLGICLGmQll~i 406 (564)
+....+|.|+||||.+.. .....++.++.+.+++.++.|||-|--+|+.
T Consensus 71 ~~~~~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~ 121 (322)
T PRK09393 71 ELLDRADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLAA 121 (322)
T ss_pred cccCCCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHh
Confidence 345688999999986532 2345778888888889999999999988753
No 166
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=88.33 E-value=3.6 Score=45.46 Aligned_cols=140 Identities=22% Similarity=0.327 Sum_probs=82.7
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHH-HCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCC
Q 008476 3 YVLVTGGVVSGLGKGVTASSIGVLLK-ACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (564)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~-~~g~~v~~~k~dpyln~d~gtm~p~~hgev~v~~dg~e~dldlg~yerf~~~~ 81 (564)
.|+++| ..|.||=.+++.++..|+ .+|.+|.++-+|+|-- +.
T Consensus 101 vi~~vG--~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~---~a-------------------------------- 143 (428)
T TIGR00959 101 VILMVG--LQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP---AA-------------------------------- 143 (428)
T ss_pred EEEEEC--CCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch---HH--------------------------------
Confidence 455555 579999999999999987 5899999999999521 00
Q ss_pred CCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccch--HHH-HHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcch
Q 008476 82 LTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHIT--DEI-QDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMP 158 (564)
Q Consensus 82 ~~~~~~~t~g~iy~~vi~ker~g~ylg~tvqviph~t--~~i-~~~i~~~~~~p~~~~~~~~d~~i~e~ggtvgdies~p 158 (564)
+=+-++.+...|-.+...+.-. .+| ++.++.+. ..++|+|||...|-.. +.. .
T Consensus 144 ---------------~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~-------~~~~DvVIIDTaGr~~-~d~-~ 199 (428)
T TIGR00959 144 ---------------IEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAK-------ENGFDVVIVDTAGRLQ-IDE-E 199 (428)
T ss_pred ---------------HHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHH-------hcCCCEEEEeCCCccc-cCH-H
Confidence 0011122233333333333211 233 34444432 3578999999999765 222 3
Q ss_pred HHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhhhhhhhC--CCcccEEEE
Q 008476 159 FIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQ--GLTPNILAC 216 (564)
Q Consensus 159 f~ea~rq~~~~~~~~~~~~~h~~~vp~~~~~~e~ktkptq~svk~l~s~--Gi~pd~lv~ 216 (564)
-++.++++..-+.++.+++| +.+. | .|.+++..+.. .+..+++|+
T Consensus 200 l~~eL~~i~~~~~p~e~lLV-------vda~----t--gq~~~~~a~~f~~~v~i~giIl 246 (428)
T TIGR00959 200 LMEELAAIKEILNPDEILLV-------VDAM----T--GQDAVNTAKTFNERLGLTGVVL 246 (428)
T ss_pred HHHHHHHHHHhhCCceEEEE-------Eecc----c--hHHHHHHHHHHHhhCCCCEEEE
Confidence 45777888777766655443 2221 2 25666544432 355677775
No 167
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=87.83 E-value=2.2 Score=43.60 Aligned_cols=108 Identities=20% Similarity=0.131 Sum_probs=65.9
Q ss_pred HHHHHHhhhcCCCCceEEEEEeccCCC-cchHH-HHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhc
Q 008476 283 EWTSRAEICDGLHEPVRIAMVGKYTGL-SDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360 (564)
Q Consensus 283 ~w~~~~~~~~~~~~~~~IavVGkY~~~-~Day~-SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L 360 (564)
-|+.+++.... ...||+++. .... .+.|. ...++|+..|+.... +.-+++. +.. .+ .+..+.+
T Consensus 16 i~~~~~~lag~--~~~rI~~ip-tAS~~~~~~~~~~~~~~~~lG~~~v~---~l~i~~r--~~a---~~----~~~~~~l 80 (250)
T TIGR02069 16 ILREFVSRAGG--EDAIIVIIT-SASEEPREVGERYITIFSRLGVKEVK---ILDVRER--EDA---SD----ENAIALL 80 (250)
T ss_pred HHHHHHHHhCC--CCceEEEEe-CCCCChHHHHHHHHHHHHHcCCceeE---EEecCCh--HHc---cC----HHHHHHH
Confidence 46666655543 346999994 3211 12233 677888999986322 1222211 100 01 1233568
Q ss_pred cCCCEEEeCCCCCCCc---h--hHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 008476 361 KGADGILVPGGFGNRG---V--QGKILAAKYAREHRIPYLGICLGMQVAV 405 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~---~--eg~i~~ir~a~e~~iPiLGICLGmQll~ 405 (564)
.++|+|+++||--.+- + .+...+++.+.+++.|+.|+--|.-+|+
T Consensus 81 ~~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~ 130 (250)
T TIGR02069 81 SNATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMS 130 (250)
T ss_pred hhCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhcc
Confidence 9999999999743221 1 3466778888888999999999998774
No 168
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=87.58 E-value=6.7 Score=39.51 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=34.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln 44 (564)
||.|-|+ +-==|.||=.++..|+..|..+|++|.++-.||--|
T Consensus 1 M~iI~v~-n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s 43 (231)
T PRK13849 1 MKLLTFC-SFKGGAGKTTALMGLCAALASDGKRVALFEADENRP 43 (231)
T ss_pred CeEEEEE-CCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 5545443 233467999999999999999999999999999755
No 169
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=86.70 E-value=1.2 Score=45.05 Aligned_cols=37 Identities=32% Similarity=0.250 Sum_probs=35.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~ 39 (564)
||.|.|+|- |+-||=..+..|-..|+.+|++|..+|-
T Consensus 1 m~vi~ivG~--~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 1 MRAIGVIGF--KDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred CeEEEEECC--CCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 789999998 8999999999999999999999999993
No 170
>PRK10818 cell division inhibitor MinD; Provisional
Probab=86.66 E-value=8.2 Score=39.09 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=34.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (564)
|-|-|++ -=.|.||=.+|+.|+..|..+|++|-++-+||.
T Consensus 3 kviav~s-~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~ 42 (270)
T PRK10818 3 RIIVVTS-GKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIG 42 (270)
T ss_pred eEEEEEe-CCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 5555554 457899999999999999999999999999995
No 171
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=86.53 E-value=1.3 Score=42.98 Aligned_cols=164 Identities=20% Similarity=0.282 Sum_probs=89.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCC
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtm~p~~hgev~v~~dg~e~dldlg~yerf~~~~ 81 (564)
|=||||| .=.+.||=.+++.|.+.|+.+|.+|...| |.++|.. + |=|.-...++.+..
T Consensus 1 r~i~I~~-t~t~vGKT~vslgL~~~l~~~g~~v~~~K-------------Pi~~~~~---~-----d~d~~~~~~~~~~~ 58 (199)
T PF13500_consen 1 RTIFITG-TDTGVGKTVVSLGLARALRRRGIKVGYFK-------------PIQTGPE---D-----DEDAELIRELFGLS 58 (199)
T ss_dssp -EEEEEE-SSSSSSHHHHHHHHHHHHHHTTSEEEEEE-------------EEEESCC---C-----SSHHHHHHHHCCTC
T ss_pred CEEEEEe-CCCCCCHHHHHHHHHHHHHhCCCceEEEe-------------eeEecCC---C-----CchHHHHHHHhCCC
Confidence 3467765 45789999999999999999999998777 8888876 1 22444445666554
Q ss_pred CCCC--CcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchH
Q 008476 82 LTRD--NNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPF 159 (564)
Q Consensus 82 ~~~~--~~~t~g~iy~~vi~ker~g~ylg~tvqviph~t~~i~~~i~~~~~~p~~~~~~~~d~~i~e~ggtvgdies~pf 159 (564)
.+.. +-++-..-....+..++.| ..++ .++|+ .++++ .+.|++|||=-|.+.. ....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-----~~~i~--~~~l~--------~~~D~vlVEGag~~~~--~~~~ 117 (199)
T PF13500_consen 59 EPPDDPSPYTFDEPASPHLAAELEG----VDID-----LERII--YKELA--------EEYDVVLVEGAGGLMV--PIFS 117 (199)
T ss_dssp CCHHHHECEEESSSS-HHHHHHHHT-------------HHHHH--HHHCH--------TTTCEEEEEESSSTTS--ECCT
T ss_pred cccccccccccCcccCHHHHhhccC----Cccc-----HHHHH--HHHHh--------hcCCEEEEeCCcccCc--cccc
Confidence 3322 2222222223344444443 2222 22232 24443 4779999996555542 2222
Q ss_pred HHHHHHhhhhcCCCCEEEEEeeeeeeecCCCcccc-CCchhhhhhhhhCCCcccEEEEee
Q 008476 160 IEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKT-KPTQHSVRGLRGQGLTPNILACRS 218 (564)
Q Consensus 160 ~ea~rq~~~~~~~~~~~~~h~~~vp~~~~~~e~kt-kptq~svk~l~s~Gi~pd~lv~R~ 218 (564)
-.-..++...++-. ++.| .+ ++..| -=+..+++.+++.|+..-++|.-.
T Consensus 118 ~~~n~dia~~L~a~-vIlV-------~~--~~~g~i~~~l~~~~~~~~~g~~v~GvI~N~ 167 (199)
T PF13500_consen 118 GDLNADIAKALGAP-VILV-------AS--GRLGTINHTLLTIEALKQRGIRVLGVILNR 167 (199)
T ss_dssp TEEHHHHHHHHT-E-EEEE-------EE--SSTTHHHHHHHHHHHHHCTTS-EEEEEEEE
T ss_pred ChHHHHHHHHcCCC-EEEE-------eC--CCCCCHHHHHHHHHHHHhcCCCEEEEEEEC
Confidence 12333555555422 3332 21 22222 012346677888999999988855
No 172
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=86.50 E-value=2.7 Score=36.06 Aligned_cols=36 Identities=33% Similarity=0.470 Sum_probs=32.2
Q ss_pred eCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 008476 7 TGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (564)
Q Consensus 7 tggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (564)
-.|-=.|.||=.+|+.++..|..+|.+|-++-.||.
T Consensus 4 ~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 4 VANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 344556899999999999999999999999999998
No 173
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=85.88 E-value=1.2 Score=46.17 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=34.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHC-C-CeeEEeeecccc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKAC-G-LRVTCIKIDPYL 43 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~-g-~~v~~~k~dpyl 43 (564)
+.|.+.|. +|.||=.+++.|+..+..+ | ++|.++.+|||-
T Consensus 195 ~vi~~vGp--tGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 195 GVIALVGP--TGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 35667775 8999999999999999876 5 999999999864
No 174
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=85.13 E-value=5.1 Score=39.61 Aligned_cols=38 Identities=32% Similarity=0.416 Sum_probs=33.4
Q ss_pred EeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 008476 6 VTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (564)
Q Consensus 6 vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln 44 (564)
|++| -.|.||=.+++.++..+..+|++|-++-.||--+
T Consensus 3 ~~~g-~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~ 40 (217)
T cd02035 3 FFTG-KGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHN 40 (217)
T ss_pred EEeC-CCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcc
Confidence 4444 6899999999999999999999999999998764
No 175
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=84.80 E-value=1.3 Score=44.75 Aligned_cols=38 Identities=37% Similarity=0.626 Sum_probs=34.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (564)
|.|+||.|= -|+||=.++|+||.-|..+|.||..+-+|
T Consensus 3 ~iIVvTSGK-GGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 3 RIIVVTSGK-GGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred eEEEEecCC-CCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 789999774 68899999999999999999999998765
No 176
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=84.61 E-value=1.5 Score=44.34 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=35.4
Q ss_pred cCCCEEEeCCC-CCCCch---hHHHHHHHHHHHcCCCEEEEehhHHHH
Q 008476 361 KGADGILVPGG-FGNRGV---QGKILAAKYAREHRIPYLGICLGMQVA 404 (564)
Q Consensus 361 ~~~DGIllpGG-fG~r~~---eg~i~~ir~a~e~~iPiLGICLGmQll 404 (564)
+.+|.|+|||| +|.... +-..+.++...+.+.++..||-|--++
T Consensus 66 ~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap~~a 113 (247)
T KOG2764|consen 66 SKYDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTA 113 (247)
T ss_pred ccccEEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecchHHH
Confidence 78999999999 777533 456677888888899999999986444
No 177
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=84.37 E-value=1.6 Score=45.41 Aligned_cols=43 Identities=35% Similarity=0.519 Sum_probs=38.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (564)
|| |.|+| =-|+||=.+++.|+..|..+|+||-++-+||=.|.=
T Consensus 1 m~-ia~~g--KGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t 43 (290)
T CHL00072 1 MK-LAVYG--KGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDST 43 (290)
T ss_pred Ce-EEEEC--CCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCccc
Confidence 67 77887 788999999999999999999999999999987753
No 178
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=84.13 E-value=2.3 Score=44.21 Aligned_cols=39 Identities=26% Similarity=0.233 Sum_probs=36.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (564)
||.|-|+|- ||-||=..+..|-..|+.+| +|..+|.||-
T Consensus 1 M~~i~i~G~--~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h 39 (274)
T PRK14493 1 MKVLSIVGY--KATGKTTLVERLVDRLSGRG-RVGTVKHMDT 39 (274)
T ss_pred CcEEEEECC--CCCCHHHHHHHHHHHHHhCC-CEEEEEEcCC
Confidence 788889998 89999999999999999999 9999999993
No 179
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=83.38 E-value=2.9 Score=39.78 Aligned_cols=40 Identities=40% Similarity=0.387 Sum_probs=36.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (564)
||.|-|+|- ||-||-..+.-+-..|+.+|++|..+|.|+.
T Consensus 1 m~vi~i~G~--~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~ 40 (159)
T cd03116 1 MKVIGFVGY--SGSGKTTLLEKLIPALSARGLRVAVIKHDHH 40 (159)
T ss_pred CeEEEEECC--CCCCHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 677888887 8999999999999999999999999999876
No 180
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=82.98 E-value=1.9 Score=44.83 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=38.4
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCC
Q 008476 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAG 48 (564)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~g 48 (564)
|-|||| ||-||=.++.++..+|+..|.+|.++..|.|--.|--
T Consensus 2 IgItG~--SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~ 44 (277)
T cd02029 2 IAVTGS--SGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERM 44 (277)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCch
Confidence 678996 8999999999999999999999999999999775543
No 181
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=82.42 E-value=2.1 Score=43.78 Aligned_cols=43 Identities=23% Similarity=0.482 Sum_probs=39.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (564)
||-|-|+ | =-|+||=.++..|+..|..+|+||-++-+||..|-
T Consensus 1 ~~~iav~-g-KGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~ 43 (273)
T PRK13232 1 MRQIAIY-G-KGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADS 43 (273)
T ss_pred CCEEEEE-C-CCCCcHHHHHHHHHHHHHhhCCCeEEEeccccccc
Confidence 6777778 5 78999999999999999999999999999999884
No 182
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=81.41 E-value=6 Score=39.41 Aligned_cols=108 Identities=16% Similarity=0.076 Sum_probs=65.2
Q ss_pred HHHHHHhhhcCCCCceEEEEEeccCCC-cch-HHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhc
Q 008476 283 EWTSRAEICDGLHEPVRIAMVGKYTGL-SDA-YLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360 (564)
Q Consensus 283 ~w~~~~~~~~~~~~~~~IavVGkY~~~-~Da-y~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L 360 (564)
-|+.+.+... +...+|+++ .+... .+. ...+.++++..|+..... +...+.+.. .+| +..+.+
T Consensus 17 i~~~~~~~ag--~~~~~i~~i-ptA~~~~~~~~~~~~~~~~~lG~~~v~~-----~~~~~~~~a---~~~----~~~~~l 81 (217)
T cd03145 17 ILQRFVARAG--GAGARIVVI-PAASEEPAEVGEEYRDVFERLGAREVEV-----LVIDSREAA---NDP----EVVARL 81 (217)
T ss_pred HHHHHHHHcC--CCCCcEEEE-eCCCcChhHHHHHHHHHHHHcCCceeEE-----eccCChHHc---CCH----HHHHHH
Confidence 3455555543 245789999 45321 122 235777888888864221 221111100 011 234678
Q ss_pred cCCCEEEeCCCCCCCc---h--hHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 008476 361 KGADGILVPGGFGNRG---V--QGKILAAKYAREHRIPYLGICLGMQVAV 405 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~---~--eg~i~~ir~a~e~~iPiLGICLGmQll~ 405 (564)
.++|+|+++||--.+- + .+...+++.+.+++.|+.|+--|.-+++
T Consensus 82 ~~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~ 131 (217)
T cd03145 82 RDADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMS 131 (217)
T ss_pred HhCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhh
Confidence 9999999999732221 1 3567788888889999999999998874
No 183
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=81.20 E-value=2.6 Score=44.79 Aligned_cols=49 Identities=27% Similarity=0.329 Sum_probs=42.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCC
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMS 51 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtm~ 51 (564)
+++||+|| =.|+||=.+|||++..|-+.|.||-++-.||=-|...-...
T Consensus 2 ~riv~f~G--KGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTG--KGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEec--CCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 58999998 47899999999999999999999999999998887655444
No 184
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=81.15 E-value=2.8 Score=42.29 Aligned_cols=44 Identities=25% Similarity=0.492 Sum_probs=39.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (564)
||-|.|. | =-|.||=.+++-|+..|..+|+||-++-+||-.|.-
T Consensus 1 m~~iav~-~-KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~ 44 (270)
T cd02040 1 MRQIAIY-G-KGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADST 44 (270)
T ss_pred CcEEEEE-e-CCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCch
Confidence 6778887 5 889999999999999999999999999999998753
No 185
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=80.83 E-value=3 Score=42.73 Aligned_cols=45 Identities=27% Similarity=0.428 Sum_probs=40.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCC
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDA 47 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~ 47 (564)
||-|.++ | =.|+||=.+|..|+..|..+|+||-++-+||--|.=.
T Consensus 1 ~~~i~~~-g-KGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t~ 45 (279)
T PRK13230 1 MRKFCFY-G-KGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTR 45 (279)
T ss_pred CcEEEEE-C-CCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccccc
Confidence 6778888 4 8899999999999999999999999999999877633
No 186
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=79.53 E-value=2.6 Score=44.30 Aligned_cols=42 Identities=26% Similarity=0.473 Sum_probs=35.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln 44 (564)
||+||++|= =|+||=.+||+++..+..+|.+|-++-+||-=|
T Consensus 1 ~r~~~~~GK--GGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 1 MRILFFGGK--GGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp -SEEEEEES--TTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred CeEEEEecC--CCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 799999983 377999999999999999999999999999543
No 187
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=79.36 E-value=16 Score=38.23 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=36.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln 44 (564)
|-|-|+| .=-|.||=.+|+.|+..|..+|.+|-++-+||.-+
T Consensus 94 ~vIav~~-~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~ 135 (322)
T TIGR03815 94 VVVAVIG-GRGGAGASTLAAALALAAARHGLRTLLVDADPWGG 135 (322)
T ss_pred eEEEEEc-CCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 5566665 45789999999999999999999999999999864
No 188
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=79.16 E-value=4.8 Score=36.87 Aligned_cols=37 Identities=30% Similarity=0.329 Sum_probs=33.4
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 008476 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (564)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (564)
.+|+|| .+.||=.+++-+-+.|+.+|++|...|-.+.
T Consensus 2 ~~~~~~---~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~~~ 38 (134)
T cd03109 2 MGFGTG---TDIGKTVATAILARALKEKGYRVAPLKPVQT 38 (134)
T ss_pred EEEeCC---CCcCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 378998 6699999999999999999999999998876
No 189
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=79.12 E-value=3.4 Score=39.06 Aligned_cols=35 Identities=34% Similarity=0.399 Sum_probs=31.0
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 008476 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (564)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (564)
|.|+|- +|-||-..+..+...|+.+|++|..+|-|
T Consensus 2 i~i~G~--~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGP--KNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 455664 79999999999999999999999999977
No 190
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=78.56 E-value=3.1 Score=39.35 Aligned_cols=36 Identities=28% Similarity=0.383 Sum_probs=31.2
Q ss_pred ccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 008476 10 VVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (564)
Q Consensus 10 v~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (564)
.-.|.||=.+|+.|+..|..+|++|-++.+||.-+-
T Consensus 6 ~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~ 41 (195)
T PF01656_consen 6 GKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPN 41 (195)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHH
T ss_pred CCCCccHHHHHHHHHhccccccccccccccCccccc
Confidence 357899999999999999999999999999996543
No 191
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=77.27 E-value=3.6 Score=45.46 Aligned_cols=40 Identities=18% Similarity=0.394 Sum_probs=36.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyl 43 (564)
+.|.++| ..|.||=.+++.|+..|+.+|++|.++-.|||-
T Consensus 101 ~vi~lvG--~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 101 NVIMFVG--LQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 4677888 799999999999999999999999999999985
No 192
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=76.62 E-value=3.8 Score=45.20 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=34.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHH-HHHCCCeeEEeeeccccc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVL-LKACGLRVTCIKIDPYLN 44 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~l-l~~~g~~v~~~k~dpyln 44 (564)
+.|+++| .+|.||..+++.|+.. +..+|.+|.++-+|+|=.
T Consensus 224 ~vi~lvG--ptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 224 KVVFFVG--PTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 4577887 6999999999999974 478999999999999753
No 193
>PLN02929 NADH kinase
Probab=76.61 E-value=3.6 Score=43.40 Aligned_cols=65 Identities=23% Similarity=0.309 Sum_probs=46.2
Q ss_pred CcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHHHHHHHH
Q 008476 309 LSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAR 388 (564)
Q Consensus 309 ~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~eg~i~~ir~a~ 388 (564)
++++...+.+.|+.+|+++.. +...++ .+.+.++|-||.-||-|. ++.+++.+
T Consensus 32 h~~~~~~~~~~L~~~gi~~~~------v~r~~~---------------~~~~~~~Dlvi~lGGDGT-----~L~aa~~~- 84 (301)
T PLN02929 32 HKDTVNFCKDILQQKSVDWEC------VLRNEL---------------SQPIRDVDLVVAVGGDGT-----LLQASHFL- 84 (301)
T ss_pred hHHHHHHHHHHHHHcCCEEEE------eecccc---------------ccccCCCCEEEEECCcHH-----HHHHHHHc-
Confidence 344667888899999987633 111221 023568899999998664 66777877
Q ss_pred HcCCCEEEEehh
Q 008476 389 EHRIPYLGICLG 400 (564)
Q Consensus 389 e~~iPiLGICLG 400 (564)
..++|++||=.|
T Consensus 85 ~~~iPvlGIN~G 96 (301)
T PLN02929 85 DDSIPVLGVNSD 96 (301)
T ss_pred CCCCcEEEEECC
Confidence 778999999888
No 194
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=76.59 E-value=4.9 Score=38.98 Aligned_cols=43 Identities=28% Similarity=0.349 Sum_probs=37.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln 44 (564)
+|-|.||++ -.|.||=.+++.|+..|..+|++|-++-.||+-.
T Consensus 17 ~kvI~v~s~-kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~ 59 (204)
T TIGR01007 17 IKVLLITSV-KPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNS 59 (204)
T ss_pred CcEEEEecC-CCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCh
Confidence 477888764 4678999999999999999999999999999743
No 195
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=76.55 E-value=4.4 Score=43.20 Aligned_cols=42 Identities=26% Similarity=0.463 Sum_probs=38.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln 44 (564)
+|-|.||| -.|.||=.+++.++..|..+|+||-++-.||+-+
T Consensus 31 ~~ii~v~g--kgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~ 72 (329)
T cd02033 31 TQIIAIYG--KGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSD 72 (329)
T ss_pred CeEEEEEC--CCCCCHHHHHHHHHHHHHHCCCcEEEEEeeeccc
Confidence 36788885 7999999999999999999999999999999964
No 196
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=76.48 E-value=2 Score=40.20 Aligned_cols=73 Identities=19% Similarity=0.199 Sum_probs=47.1
Q ss_pred HHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCc---h--hHHHHHHHHHHH
Q 008476 315 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG---V--QGKILAAKYARE 389 (564)
Q Consensus 315 SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~---~--eg~i~~ir~a~e 389 (564)
.+.++|+..|+++.. ++..+.+ ..+..+.+.++|+|++.||--.+- + .+...+++.+..
T Consensus 4 ~~~~~f~~~g~~v~~------l~~~~~~----------~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~ 67 (154)
T PF03575_consen 4 KFRKAFRKLGFEVDQ------LDLSDRN----------DADILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAYR 67 (154)
T ss_dssp HHHHHHHHCT-EEEE------CCCTSCG----------HHHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEE------EeccCCC----------hHHHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHH
Confidence 567888899977533 4332211 113446778999999999632221 1 357788998888
Q ss_pred cCCCEEEEehhHHH
Q 008476 390 HRIPYLGICLGMQV 403 (564)
Q Consensus 390 ~~iPiLGICLGmQl 403 (564)
++.|+.|+--|.-+
T Consensus 68 ~G~vi~G~SAGA~i 81 (154)
T PF03575_consen 68 KGGVIIGTSAGAMI 81 (154)
T ss_dssp TTSEEEEETHHHHC
T ss_pred CCCEEEEEChHHhh
Confidence 89999999999854
No 197
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=75.70 E-value=5.3 Score=35.94 Aligned_cols=36 Identities=33% Similarity=0.516 Sum_probs=33.7
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 008476 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (564)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp 41 (564)
|.++|. +|.||=..++.++..|..+|.+|-++-.||
T Consensus 2 i~~~Gk--gG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGK--GGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 678885 899999999999999999999999999999
No 198
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=75.58 E-value=28 Score=31.81 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=33.3
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 008476 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (564)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (564)
|-+|++ =+|-||=.+++.++..|..+|.+|.++-.||+
T Consensus 2 i~~~~~-kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~ 39 (139)
T cd02038 2 IAVTSG-KGGVGKTNISANLALALAKLGKRVLLLDADLG 39 (139)
T ss_pred EEEEcC-CCCCcHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 445555 78999999999999999999999999999983
No 199
>PRK07667 uridine kinase; Provisional
Probab=75.30 E-value=5.6 Score=38.61 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=36.3
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 008476 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (564)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln 44 (564)
.|.++|+ ||-||-..|..|...|+..|.+|..+.+|.|+.
T Consensus 19 iIgI~G~--~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~ 58 (193)
T PRK07667 19 ILGIDGL--SRSGKTTFVANLKENMKQEGIPFHIFHIDDYIV 58 (193)
T ss_pred EEEEECC--CCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccc
Confidence 5788886 678999999999999999999999999999874
No 200
>CHL00175 minD septum-site determining protein; Validated
Probab=75.15 E-value=5.6 Score=40.68 Aligned_cols=45 Identities=31% Similarity=0.512 Sum_probs=38.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc-ccCCC
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY-LNTDA 47 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy-ln~d~ 47 (564)
|.|.|++| --|.||=.+|+.+|..|..+|++|-++-+||- -|++.
T Consensus 16 ~vi~v~s~-KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~ 61 (281)
T CHL00175 16 RIIVITSG-KGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDL 61 (281)
T ss_pred eEEEEEcC-CCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhh
Confidence 67777765 47899999999999999999999999999996 45553
No 201
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=74.99 E-value=5.6 Score=38.27 Aligned_cols=41 Identities=29% Similarity=0.413 Sum_probs=37.2
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 008476 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (564)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (564)
|.|+| .||-||-..|.+|...|+..|.+|..+.+|=|..-.
T Consensus 2 i~i~G--~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~ 42 (179)
T cd02028 2 VGIAG--PSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPR 42 (179)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCc
Confidence 77888 588899999999999999999999999999998754
No 202
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=73.63 E-value=5.9 Score=42.00 Aligned_cols=39 Identities=33% Similarity=0.434 Sum_probs=35.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (564)
+.|.++| .+|.||=.+++.|+.+|+.+|.+|.++-.|+|
T Consensus 115 ~vi~lvG--pnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 115 FVILVVG--VNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred eEEEEEC--CCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 4677887 99999999999999999999999999999984
No 203
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=73.12 E-value=6 Score=40.32 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=38.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHH-CCCeeEEeeecccccC
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKA-CGLRVTCIKIDPYLNT 45 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~-~g~~v~~~k~dpyln~ 45 (564)
+|.|-|+ | =.|+||=.+|..||..|.. +|+||-++-+||-.|-
T Consensus 2 ~~vIav~-~-KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~ 45 (275)
T PRK13233 2 TRKIAIY-G-KGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADS 45 (275)
T ss_pred ceEEEEE-c-CCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcCh
Confidence 3778888 6 8899999999999999997 6999999999999774
No 204
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=73.08 E-value=6 Score=40.47 Aligned_cols=46 Identities=24% Similarity=0.370 Sum_probs=39.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc------cccCCC
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP------YLNTDA 47 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp------yln~d~ 47 (564)
||-|.|+| +=-|.||=.++|.++..|+..|.+|.+|-+|| .+|+|.
T Consensus 1 M~~iai~s-~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~~ 52 (243)
T PF06564_consen 1 MKVIAIVS-PKGGVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLPL 52 (243)
T ss_pred CcEEEEec-CCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCCC
Confidence 77788774 56688999999999999999999999999999 566653
No 205
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=72.91 E-value=7.6 Score=38.01 Aligned_cols=42 Identities=26% Similarity=0.302 Sum_probs=35.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHH-CCCeeEEeeecccc
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKA-CGLRVTCIKIDPYL 43 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~-~g~~v~~~k~dpyl 43 (564)
+|-|.||| .-+|.||=.+|+.|+..|.. +|+||-++-.||.-
T Consensus 35 ~~vi~v~s-~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~ 77 (207)
T TIGR03018 35 NNLIMVTS-SLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRR 77 (207)
T ss_pred CeEEEEEC-CCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 35666764 45899999999999999975 79999999999974
No 206
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=71.58 E-value=8.9 Score=37.80 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=31.0
Q ss_pred HhccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehh
Q 008476 358 KLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (564)
Q Consensus 358 ~~L~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGICLG 400 (564)
+.|+++|.||+...+++.-.....++++...+++.+++||.-+
T Consensus 48 ~~L~~~Dvvv~~~~~~~~l~~~~~~al~~~v~~Ggglv~lH~~ 90 (217)
T PF06283_consen 48 ENLKGYDVVVFYNTGGDELTDEQRAALRDYVENGGGLVGLHGA 90 (217)
T ss_dssp HCHCT-SEEEEE-SSCCGS-HHHHHHHHHHHHTT-EEEEEGGG
T ss_pred hHhcCCCEEEEECCCCCcCCHHHHHHHHHHHHcCCCEEEEccc
Confidence 4689999999998776543456677888888899999999843
No 207
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.32 E-value=8.7 Score=40.32 Aligned_cols=95 Identities=22% Similarity=0.220 Sum_probs=52.6
Q ss_pred eEEEEEeccCCCc--chHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCC-chhhhHHHHhccCCCEEEeCCCCCC
Q 008476 298 VRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKEN-PDAYKAAWKLLKGADGILVPGGFGN 374 (564)
Q Consensus 298 ~~IavVGkY~~~~--Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~-p~~y~~~~~~L~~~DGIllpGGfG~ 374 (564)
++|+++.+...-. .....+.++|+..|+.+.+. ...+..+........ ........+....+|-+++-||-|+
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDGT 76 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIE----EKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIGGDGT 76 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEe----cchhhhhccccccccccccccchhhcccCCCEEEEECCcHH
Confidence 4799997654321 12346777788888876441 000111100000000 0000000122346899999998664
Q ss_pred CchhHHHHHHHHHHHcCCCEEEEehhH
Q 008476 375 RGVQGKILAAKYAREHRIPYLGICLGM 401 (564)
Q Consensus 375 r~~eg~i~~ir~a~e~~iPiLGICLGm 401 (564)
++.+++.+...++|+|||=+|.
T Consensus 77 -----~L~aa~~~~~~~~PilGIN~G~ 98 (292)
T PRK01911 77 -----FLRTATYVGNSNIPILGINTGR 98 (292)
T ss_pred -----HHHHHHHhcCCCCCEEEEecCC
Confidence 6778888777899999999886
No 208
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=70.74 E-value=7.2 Score=36.82 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=31.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~ 39 (564)
++|++.| ..|-||+..+..|...|..+|++|.....
T Consensus 1 ~~I~ieG--~~GsGKtT~~~~L~~~l~~~g~~v~~~~~ 36 (200)
T cd01672 1 MFIVFEG--IDGAGKTTLIELLAERLEARGYEVVLTRE 36 (200)
T ss_pred CEEEEEC--CCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 5788998 68899999999999999999999966554
No 209
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.56 E-value=13 Score=39.16 Aligned_cols=94 Identities=18% Similarity=0.112 Sum_probs=52.4
Q ss_pred eEEEEEeccCCCc--chHHHHHHHHHHcCCcceeeeEEEEecCC-CcccccccCCchhhhHHHHhccCCCEEEeCCCCCC
Q 008476 298 VRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPAC-DLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 374 (564)
Q Consensus 298 ~~IavVGkY~~~~--Day~SIi~aL~~aG~~v~v~v~i~wi~s~-~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~ 374 (564)
.+|+++.+...-. .....+.++|+..|+.+.+. -.....+ ......... ......+....+|-+|.-||-|.
T Consensus 6 ~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~D~vi~lGGDGT 80 (296)
T PRK04539 6 HNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLD--EVGIKEGCIYTQDTVGC---HIVNKTELGQYCDLVAVLGGDGT 80 (296)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEe--cccccccchhccccccc---cccchhhcCcCCCEEEEECCcHH
Confidence 3699997765321 12346677788888876442 0000000 000000000 00001122246899999998663
Q ss_pred CchhHHHHHHHHHHHcCCCEEEEehhH
Q 008476 375 RGVQGKILAAKYAREHRIPYLGICLGM 401 (564)
Q Consensus 375 r~~eg~i~~ir~a~e~~iPiLGICLGm 401 (564)
++.+++.+...++|+|||=+|.
T Consensus 81 -----~L~aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 81 -----FLSVAREIAPRAVPIIGINQGH 102 (296)
T ss_pred -----HHHHHHHhcccCCCEEEEecCC
Confidence 6777887777799999999886
No 210
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=70.54 E-value=7.6 Score=39.64 Aligned_cols=43 Identities=28% Similarity=0.431 Sum_probs=38.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (564)
||-|-|. | =-|+||=.++..||..|..+|+||-++-+||=.|-
T Consensus 1 m~~iav~-~-KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~ 43 (274)
T PRK13235 1 MRKVAIY-G-KGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADS 43 (274)
T ss_pred CCEEEEe-C-CCCccHHHHHHHHHHHHHHCCCcEEEEecCCcccc
Confidence 5667777 5 88999999999999999999999999999998874
No 211
>PRK10037 cell division protein; Provisional
Probab=70.51 E-value=6.7 Score=39.53 Aligned_cols=41 Identities=27% Similarity=0.315 Sum_probs=33.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (564)
||. +-...-=-|.||=.+|+.|+..|..+|+||-+|-+||=
T Consensus 1 ~~~-iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q 41 (250)
T PRK10037 1 MAI-LGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPD 41 (250)
T ss_pred CcE-EEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 563 33333445789999999999999999999999999994
No 212
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=70.42 E-value=7.4 Score=42.59 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=35.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (564)
+.|.++|- +|.||=.+++.|+..+..+|.+|.++-.|||
T Consensus 207 ~ii~lvGp--tGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 207 RIISLIGQ--TGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 56788884 6999999999999999999999999999998
No 213
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=70.38 E-value=8.5 Score=39.03 Aligned_cols=42 Identities=29% Similarity=0.422 Sum_probs=37.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (564)
|-|-|. | =-|.||=.+++.|+..|..+|+||-++-+||=.|.
T Consensus 3 ~iIav~-~-KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~ 44 (270)
T PRK13185 3 LVLAVY-G-KGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDS 44 (270)
T ss_pred eEEEEE-C-CCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcch
Confidence 677777 6 89999999999999999999999999999995443
No 214
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=69.69 E-value=6.6 Score=36.57 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=30.8
Q ss_pred CccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 008476 9 GVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (564)
Q Consensus 9 gv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (564)
+-=+|.||=.+|+.|+..|..+|++|-++-+||-
T Consensus 6 ~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~ 39 (179)
T cd02036 6 SGKGGVGKTTTTANLGTALAQLGYKVVLIDADLG 39 (179)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3457899999999999999999999999998885
No 215
>PRK13236 nitrogenase reductase; Reviewed
Probab=68.91 E-value=8.5 Score=40.10 Aligned_cols=42 Identities=21% Similarity=0.382 Sum_probs=36.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (564)
+-|-| +| =-|+||=.+|+.|+..|..+|+||-++-+||..|-
T Consensus 7 ~~~~~-~G-KGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~ 48 (296)
T PRK13236 7 RQIAF-YG-KGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADS 48 (296)
T ss_pred eEEEE-EC-CCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCc
Confidence 34444 44 67899999999999999999999999999998864
No 216
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=68.87 E-value=9.2 Score=39.81 Aligned_cols=43 Identities=21% Similarity=0.395 Sum_probs=36.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (564)
||-|-|. | =.|+||=.+++.|+..|..+|+||-+|-.||-.|-
T Consensus 4 ~~~iai~-~-KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~ 46 (295)
T PRK13234 4 LRQIAFY-G-KGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADS 46 (295)
T ss_pred ceEEEEE-C-CCCccHHHHHHHHHHHHHHCCCeEEEEeccccccc
Confidence 4555554 3 67899999999999999999999999999998665
No 217
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=68.84 E-value=12 Score=39.30 Aligned_cols=90 Identities=20% Similarity=0.240 Sum_probs=52.2
Q ss_pred eEEEEEeccCCCc--chHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 008476 298 VRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (564)
Q Consensus 298 ~~IavVGkY~~~~--Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r 375 (564)
.+|+++.+...-. .....+.++|+..|+.+.+. . ..+........ + .+ ...+...++|-+|.-||-|.
T Consensus 6 ~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~--~--~~~~~~~~~~~---~-~~-~~~~~~~~~d~vi~~GGDGt- 75 (291)
T PRK02155 6 KTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFE--A--DTARNIGLTGY---P-AL-TPEEIGARADLAVVLGGDGT- 75 (291)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEe--c--chhhhcCcccc---c-cc-ChhHhccCCCEEEEECCcHH-
Confidence 3599997765422 12457788888888775431 0 00111100000 0 00 01122346899999997663
Q ss_pred chhHHHHHHHHHHHcCCCEEEEehhH
Q 008476 376 GVQGKILAAKYAREHRIPYLGICLGM 401 (564)
Q Consensus 376 ~~eg~i~~ir~a~e~~iPiLGICLGm 401 (564)
.+.+++.+...++|+|||=+|.
T Consensus 76 ----~l~~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 76 ----MLGIGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred ----HHHHHHHhcCCCCCEEEEcCCC
Confidence 5677777666789999998886
No 218
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=68.45 E-value=5.6 Score=41.10 Aligned_cols=43 Identities=33% Similarity=0.471 Sum_probs=39.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (564)
|||||-|= -|+||=..++||+.-|..-+-+|-+|--||--|+-
T Consensus 20 KwifVGGK--GGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlS 62 (323)
T KOG2825|consen 20 KWIFVGGK--GGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLS 62 (323)
T ss_pred eEEEEcCc--CCcCccchhhHHHHHHhccCCceEEeecCcccchH
Confidence 99999763 57899999999999999999999999999998873
No 219
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.27 E-value=12 Score=39.62 Aligned_cols=36 Identities=31% Similarity=0.325 Sum_probs=29.4
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGICLGm 401 (564)
+++|-+|+-||-|+ .+.+++.+...++|+|||=+|.
T Consensus 67 ~~~Dlvi~iGGDGT-----lL~aar~~~~~~iPilGIN~G~ 102 (305)
T PRK02649 67 SSMKFAIVLGGDGT-----VLSAARQLAPCGIPLLTINTGH 102 (305)
T ss_pred cCcCEEEEEeCcHH-----HHHHHHHhcCCCCcEEEEeCCC
Confidence 46899999998663 6778888777899999998773
No 220
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=67.99 E-value=14 Score=38.74 Aligned_cols=85 Identities=26% Similarity=0.183 Sum_probs=51.8
Q ss_pred eEEEEEeccCCCcchH---HHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCC
Q 008476 298 VRIAMVGKYTGLSDAY---LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 374 (564)
Q Consensus 298 ~~IavVGkY~~~~Day---~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~ 374 (564)
.+|+++.+... ++. ..+.+.|+..|+++.+. ...+..+.... + ...+...++|-+|+=||-|.
T Consensus 11 ~~i~ii~~~~~--~~~~~~~~i~~~l~~~g~~~~~~----~~~~~~~~~~~-------~-~~~~~~~~~Dlvi~iGGDGT 76 (287)
T PRK14077 11 KKIGLVTRPNV--SLDKEILKLQKILSIYKVEILLE----KESAEILDLPG-------Y-GLDELFKISDFLISLGGDGT 76 (287)
T ss_pred CEEEEEeCCcH--HHHHHHHHHHHHHHHCCCEEEEe----cchhhhhcccc-------c-chhhcccCCCEEEEECCCHH
Confidence 36999976543 333 36677788788776442 11111110000 0 00122347899999998663
Q ss_pred CchhHHHHHHHHHHHcCCCEEEEehhH
Q 008476 375 RGVQGKILAAKYAREHRIPYLGICLGM 401 (564)
Q Consensus 375 r~~eg~i~~ir~a~e~~iPiLGICLGm 401 (564)
++.+++.+...++|+|||=+|.
T Consensus 77 -----~L~aa~~~~~~~~PilGIN~G~ 98 (287)
T PRK14077 77 -----LISLCRKAAEYDKFVLGIHAGH 98 (287)
T ss_pred -----HHHHHHHhcCCCCcEEEEeCCC
Confidence 6778888777899999999886
No 221
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=67.69 E-value=12 Score=39.67 Aligned_cols=95 Identities=27% Similarity=0.308 Sum_probs=53.5
Q ss_pred eEEEEEeccCCCc--chHHHHHHHHHHcCCcceeeeEEEEecCCCccccccc----CCchhhhHHHHhccCCCEEEeCCC
Q 008476 298 VRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEK----ENPDAYKAAWKLLKGADGILVPGG 371 (564)
Q Consensus 298 ~~IavVGkY~~~~--Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~----~~p~~y~~~~~~L~~~DGIllpGG 371 (564)
.+|+++.+...-. .....+.++|+..|+++.+. ...+..+...... .+...|........++|.+++-||
T Consensus 6 ~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGG 81 (306)
T PRK03372 6 RRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVL----DAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLVLGG 81 (306)
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEe----echhhhhcccccccccccccccccchhhcccCCCEEEEEcC
Confidence 3699997765321 12346777788888876442 1111111000000 000000000122346899999998
Q ss_pred CCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 008476 372 FGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (564)
Q Consensus 372 fG~r~~eg~i~~ir~a~e~~iPiLGICLGm 401 (564)
-|. ++.+++.+...++|+|||=+|.
T Consensus 82 DGT-----~L~aar~~~~~~~PilGIN~G~ 106 (306)
T PRK03372 82 DGT-----ILRAAELARAADVPVLGVNLGH 106 (306)
T ss_pred CHH-----HHHHHHHhccCCCcEEEEecCC
Confidence 664 6788888878899999998875
No 222
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=67.15 E-value=8.2 Score=42.55 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=33.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHH--HCCCeeEEeeeccc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLK--ACGLRVTCIKIDPY 42 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~--~~g~~v~~~k~dpy 42 (564)
+.|++.|- +|.||=.+++.|+..+. ..|++|.++..|||
T Consensus 222 ~~i~~vGp--tGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 222 GVVALVGP--TGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred cEEEEECC--CCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 35666665 89999999999998886 67899999999998
No 223
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=67.01 E-value=12 Score=36.37 Aligned_cols=38 Identities=26% Similarity=0.216 Sum_probs=33.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp 41 (564)
+.|-|+|. ||-||=..+..|-.+|+.+|++|..+|.|.
T Consensus 7 ~ii~ivG~--sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~ 44 (173)
T PRK10751 7 PLLAIAAW--SGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (173)
T ss_pred eEEEEECC--CCChHHHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 45667774 999999999999999999999999999753
No 224
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=66.99 E-value=12 Score=37.69 Aligned_cols=91 Identities=23% Similarity=0.270 Sum_probs=57.6
Q ss_pred ceEEEEEeccCCCc---chHH-HHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCC
Q 008476 297 PVRIAMVGKYTGLS---DAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF 372 (564)
Q Consensus 297 ~~~IavVGkY~~~~---Day~-SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGf 372 (564)
..+|+.+ -+-... |-|. -..++|+..|+.+.- +.-..+ .+ +++...|.+.|.|.|.||-
T Consensus 32 ~~~i~FI-PtAs~~~~~~~Yv~k~~~~l~~lg~~v~~---L~l~~~-~~------------~~Ie~~l~~~d~IyVgGGN 94 (224)
T COG3340 32 RKTIAFI-PTASVDSEDDFYVEKVRNALAKLGLEVSE---LHLSKP-PL------------AAIENKLMKADIIYVGGGN 94 (224)
T ss_pred CceEEEE-ecCccccchHHHHHHHHHHHHHcCCeeee---eeccCC-CH------------HHHHHhhhhccEEEECCch
Confidence 5689999 443221 1243 577889999988732 111111 00 1233557789999999962
Q ss_pred CCC---c--hhHHHHHHHHHHHcCCCEEEEehhHHHH
Q 008476 373 GNR---G--VQGKILAAKYAREHRIPYLGICLGMQVA 404 (564)
Q Consensus 373 G~r---~--~eg~i~~ir~a~e~~iPiLGICLGmQll 404 (564)
=-. . -.|....|+.+..+++|+.|+-.|.-+.
T Consensus 95 TF~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~ia 131 (224)
T COG3340 95 TFNLLQELKETGLDDIIRERVKAGTPYIGWSAGANIA 131 (224)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHcCCceEEeccCceee
Confidence 110 0 1467888999999999999998776554
No 225
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=66.67 E-value=10 Score=37.06 Aligned_cols=42 Identities=24% Similarity=0.448 Sum_probs=37.6
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 008476 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (564)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (564)
-|.|+| =-|.||=.+++.|+..|..+|+||-++-.||-.|.=
T Consensus 2 ~iav~g--KGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~ 43 (212)
T cd02117 2 QIAIYG--KGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADST 43 (212)
T ss_pred EEEEEC--CCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCcc
Confidence 377884 889999999999999999999999999999998753
No 226
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=65.92 E-value=19 Score=34.86 Aligned_cols=87 Identities=14% Similarity=0.157 Sum_probs=51.8
Q ss_pred HhhHHHHhhhhcCCCCCCeeEEccc------ch-----HHHHHHHH-HHhcccCCCCCCCCcEEEEeeCccccccCcch-
Q 008476 92 KIYQSVIDKERKGDYLGKTVQVVPH------IT-----DEIQDWIE-RVAMIPVDGKEGPVDVCVIELGGTIGDIESMP- 158 (564)
Q Consensus 92 ~iy~~vi~ker~g~ylg~tvqviph------~t-----~~i~~~i~-~~~~~p~~~~~~~~d~~i~e~ggtvgdies~p- 158 (564)
..|...++....-.+.+..++|+.. ++ ....+|+. .+.. ..+||+|+|.+|.- |+-...
T Consensus 21 ~~w~~~l~~~l~~~~~~~~~~v~N~Gi~G~t~~~~~~~~~~l~r~~~~v~~------~~~p~~vii~~G~N--D~~~~~~ 92 (204)
T cd01830 21 NRWPDLLAARLAARAGTRGIAVLNAGIGGNRLLADGLGPSALARFDRDVLS------QPGVRTVIILEGVN--DIGASGT 92 (204)
T ss_pred CcCHHHHHHHHHhccCCCCcEEEECCccCcccccCCCChHHHHHHHHHHhc------CCCCCEEEEecccc--ccccccc
Confidence 5677777654444455566666543 11 24455554 4431 34799999998854 653322
Q ss_pred -----------HHHHHHHhhhhcCCCCEEEEEeeeeeee
Q 008476 159 -----------FIEALGQFSYRVGPGNFCLIHVSLVPVL 186 (564)
Q Consensus 159 -----------f~ea~rq~~~~~~~~~~~~~h~~~vp~~ 186 (564)
|.+.+++|-....+.+.-.|..|+-|+.
T Consensus 93 ~~~~~~~~~~~~~~~l~~ii~~~~~~~~~vil~t~~P~~ 131 (204)
T cd01830 93 DFAAAPVTAEELIAGYRQLIRRAHARGIKVIGATITPFE 131 (204)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHCCCeEEEecCCCCC
Confidence 6777777777665556656666666643
No 227
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.76 E-value=17 Score=38.20 Aligned_cols=90 Identities=21% Similarity=0.132 Sum_probs=51.8
Q ss_pred eEEEEEeccCCCc--chHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 008476 298 VRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (564)
Q Consensus 298 ~~IavVGkY~~~~--Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r 375 (564)
.+|+++.+...-. .....+.++|+..|+.+.+. ...+..+..... ......+...++|.+++-||-|.
T Consensus 6 ~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~----~~~~~~~~~~~~-----~~~~~~~~~~~~d~vi~lGGDGT- 75 (292)
T PRK03378 6 KCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVE----QQIAHELQLKNV-----KTGTLAEIGQQADLAIVVGGDGN- 75 (292)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEe----cchhhhcCcccc-----cccchhhcCCCCCEEEEECCcHH-
Confidence 3699997654321 11236777788888776431 000111100000 00001122347899999998664
Q ss_pred chhHHHHHHHHHHHcCCCEEEEehhH
Q 008476 376 GVQGKILAAKYAREHRIPYLGICLGM 401 (564)
Q Consensus 376 ~~eg~i~~ir~a~e~~iPiLGICLGm 401 (564)
.+.+++.+...++|+|||=+|.
T Consensus 76 ----~L~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 76 ----MLGAARVLARYDIKVIGINRGN 97 (292)
T ss_pred ----HHHHHHHhcCCCCeEEEEECCC
Confidence 5677777767789999999887
No 228
>PLN02727 NAD kinase
Probab=65.74 E-value=12 Score=44.95 Aligned_cols=95 Identities=15% Similarity=0.068 Sum_probs=54.0
Q ss_pred eEEEEEeccCCC-cchHHHHHHHHHHc-CCcceeeeEEEEecCCCccc-ccccCCchhhhHH-HHhccCCCEEEeCCCCC
Q 008476 298 VRIAMVGKYTGL-SDAYLSILKALLHA-SVDLRKKLVIDWIPACDLED-ATEKENPDAYKAA-WKLLKGADGILVPGGFG 373 (564)
Q Consensus 298 ~~IavVGkY~~~-~Day~SIi~aL~~a-G~~v~v~v~i~wi~s~~le~-~~~~~~p~~y~~~-~~~L~~~DGIllpGGfG 373 (564)
.+|+||+|..+. .+....+.+.|.+. |+.+.+.- -.++.+.. .........|... .+....+|.||+=||-|
T Consensus 679 rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~----~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIvLGGDG 754 (986)
T PLN02727 679 KTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEP----DVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVACLGGDG 754 (986)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEec----chHHHhhccccccccceecccchhhcccCCCEEEEECCcH
Confidence 589999988641 12234678888886 76654321 11111100 0000000000000 12224689999999866
Q ss_pred CCchhHHHHHHHHHHHcCCCEEEEehhH
Q 008476 374 NRGVQGKILAAKYAREHRIPYLGICLGM 401 (564)
Q Consensus 374 ~r~~eg~i~~ir~a~e~~iPiLGICLGm 401 (564)
. ++.+++.+...++|+|||=+|.
T Consensus 755 T-----lLrAar~~~~~~iPILGINlGr 777 (986)
T PLN02727 755 V-----ILHASNLFRGAVPPVVSFNLGS 777 (986)
T ss_pred H-----HHHHHHHhcCCCCCEEEEeCCC
Confidence 4 6788888878899999999885
No 229
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=65.54 E-value=24 Score=35.62 Aligned_cols=71 Identities=23% Similarity=0.255 Sum_probs=43.6
Q ss_pred HHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCc---hhHHH-HHHHHHHHc
Q 008476 315 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG---VQGKI-LAAKYAREH 390 (564)
Q Consensus 315 SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~---~eg~i-~~ir~a~e~ 390 (564)
--+++|+.-.... ..+..++...|..+. | .+.-..+++|||-.-+- ..+++ ..|.....+
T Consensus 18 htv~sLr~~~~p~---y~v~~V~~~~Li~Ep-----------W--~~~T~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~ 81 (253)
T COG4285 18 HTVRSLRLFAPPY---YAVDRVDAQFLIKEP-----------W--EETTLLLVFPGGADLPYVQVLQGLGTARIKNYVKE 81 (253)
T ss_pred HHHHHHHhhccch---heEEEeeeheeecCc-----------c--hhceEEEEecCCCCchHHHHhcchhhhhHHHHHhc
Confidence 3455565554443 356678887775432 2 34556789999865442 34444 335555566
Q ss_pred CCCEEEEehhH
Q 008476 391 RIPYLGICLGM 401 (564)
Q Consensus 391 ~iPiLGICLGm 401 (564)
+=-+||||.|-
T Consensus 82 GG~fLGiCAG~ 92 (253)
T COG4285 82 GGNFLGICAGG 92 (253)
T ss_pred CCeEEEEeccc
Confidence 78999999884
No 230
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=65.45 E-value=13 Score=37.57 Aligned_cols=40 Identities=35% Similarity=0.508 Sum_probs=35.0
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 008476 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (564)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (564)
|.|+ | =.|.||=.+|+.|+..|..+|+||-++-+||=.|.
T Consensus 3 i~v~-g-KGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~~ 42 (267)
T cd02032 3 LAVY-G-KGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDS 42 (267)
T ss_pred EEEe-c-CCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 5566 4 88999999999999999999999999999995443
No 231
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=65.43 E-value=9 Score=41.90 Aligned_cols=43 Identities=28% Similarity=0.437 Sum_probs=34.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (564)
|-|-|+ .-=-|.||=.+|.-|+..|..+|+||-+|-+||--|.
T Consensus 122 ~vIav~-n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~~l 164 (405)
T PRK13869 122 QVIAVT-NFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQASL 164 (405)
T ss_pred eEEEEE-cCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCCCH
Confidence 444444 2234679999999999999999999999999997554
No 232
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=64.31 E-value=7.5 Score=39.34 Aligned_cols=42 Identities=33% Similarity=0.465 Sum_probs=37.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (564)
||-|-|. | =.|.||=.+++.|+..|..+| ||-++-+||=-|.
T Consensus 2 ~~~iav~-~-KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~~ 43 (264)
T PRK13231 2 MKKIAIY-G-KGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKADT 43 (264)
T ss_pred ceEEEEE-C-CCCCcHHHHHHHHhcccCCCC-EEEEEeEccCccc
Confidence 5777777 6 899999999999999999999 9999999998654
No 233
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=64.20 E-value=1.5e+02 Score=30.74 Aligned_cols=141 Identities=16% Similarity=0.202 Sum_probs=84.9
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCC
Q 008476 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKL 82 (564)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtm~p~~hgev~v~~dg~e~dldlg~yerf~~~~~ 82 (564)
.|.+.|. +|.||=.++..|+..|..+|.+|..+-.|+|- .| .+++
T Consensus 77 ~i~~~G~--~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r-----------i~----------------~~~q------ 121 (270)
T PRK06731 77 TIALIGP--TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR-----------IG----------------TVQQ------ 121 (270)
T ss_pred EEEEECC--CCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC-----------HH----------------HHHH------
Confidence 5667776 89999999999999999999999999888662 11 1111
Q ss_pred CCCCcccchHhhHHHHhhhhcCCCCCCeeEEcc-cchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHH
Q 008476 83 TRDNNITTGKIYQSVIDKERKGDYLGKTVQVVP-HITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIE 161 (564)
Q Consensus 83 ~~~~~~t~g~iy~~vi~ker~g~ylg~tvqvip-h~t~~i~~~i~~~~~~p~~~~~~~~d~~i~e~ggtvgdies~pf~e 161 (564)
.. + .++-+| +.+++ .=.+++++.++.+++ ..+.|+|||.-.|..-. ...-++
T Consensus 122 --------------l~--~-~~~~~~--~~~~~~~~~~~l~~~l~~l~~------~~~~D~ViIDt~Gr~~~--~~~~l~ 174 (270)
T PRK06731 122 --------------LQ--D-YVKTIG--FEVIAVRDEAAMTRALTYFKE------EARVDYILIDTAGKNYR--ASETVE 174 (270)
T ss_pred --------------HH--H-HhhhcC--ceEEecCCHHHHHHHHHHHHh------cCCCCEEEEECCCCCcC--CHHHHH
Confidence 10 0 111223 33333 224567777777752 34789999999999631 134567
Q ss_pred HHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhhhhhhhCCCcccEEEE
Q 008476 162 ALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILAC 216 (564)
Q Consensus 162 a~rq~~~~~~~~~~~~~h~~~vp~~~~~~e~ktkptq~svk~l~s~Gi~pd~lv~ 216 (564)
.++++.....++ .+|+ .+.++ .|..=.+.-++.+++ +.+|.+|.
T Consensus 175 el~~~~~~~~~~---~~~L----Vl~a~--~~~~d~~~~~~~f~~--~~~~~~I~ 218 (270)
T PRK06731 175 EMIETMGQVEPD---YICL----TLSAS--MKSKDMIEIITNFKD--IHIDGIVF 218 (270)
T ss_pred HHHHHHhhhCCC---eEEE----EEcCc--cCHHHHHHHHHHhCC--CCCCEEEE
Confidence 777766555443 2333 23321 121223445666665 66788877
No 234
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=63.12 E-value=16 Score=37.87 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=27.9
Q ss_pred CCCEEEeCCCCCCCchhHHHHHHHHHHH--cCCCEEEEehhH
Q 008476 362 GADGILVPGGFGNRGVQGKILAAKYARE--HRIPYLGICLGM 401 (564)
Q Consensus 362 ~~DGIllpGGfG~r~~eg~i~~ir~a~e--~~iPiLGICLGm 401 (564)
++|.+++=||-|. .+.+++.+.. .++|++||=+|.
T Consensus 35 ~~Dlvi~iGGDGT-----~L~a~~~~~~~~~~iPilGIN~G~ 71 (265)
T PRK04885 35 NPDIVISVGGDGT-----LLSAFHRYENQLDKVRFVGVHTGH 71 (265)
T ss_pred CCCEEEEECCcHH-----HHHHHHHhcccCCCCeEEEEeCCC
Confidence 5699999998663 6677777766 689999999885
No 235
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=63.00 E-value=21 Score=40.98 Aligned_cols=104 Identities=17% Similarity=0.225 Sum_probs=58.1
Q ss_pred HHHHHhhhcC--CCCceEEEEEeccCCCc--chHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHh
Q 008476 284 WTSRAEICDG--LHEPVRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 359 (564)
Q Consensus 284 w~~~~~~~~~--~~~~~~IavVGkY~~~~--Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~ 359 (564)
++.+.+.+.. ..+..||+|+.+...-. +....+.+.|+..|+.+.+. ...+..+.... +.... ....
T Consensus 275 ~~~l~~~l~~~w~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~----~~~~~~~~~~~----~~~~~-~~~~ 345 (569)
T PRK14076 275 HKKLVGIFGNKWRIKPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELE----SFLYNKLKNRL----NEECN-LIDD 345 (569)
T ss_pred HHHHHHhhhhhcccCCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEe----chhhhhhcccc----ccccc-cccc
Confidence 4455544432 23446899997654321 22336777788888766431 00111111000 00000 0012
Q ss_pred ccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 008476 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (564)
Q Consensus 360 L~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGICLGm 401 (564)
+.++|.+|+-||-|. .+.+++.+...++|+|||=+|.
T Consensus 346 ~~~~dlvi~lGGDGT-----~L~aa~~~~~~~~PilGin~G~ 382 (569)
T PRK14076 346 IEEISHIISIGGDGT-----VLRASKLVNGEEIPIICINMGT 382 (569)
T ss_pred ccCCCEEEEECCcHH-----HHHHHHHhcCCCCCEEEEcCCC
Confidence 347899999998664 6778887777799999998875
No 236
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=62.67 E-value=6.5 Score=38.16 Aligned_cols=29 Identities=38% Similarity=0.728 Sum_probs=21.2
Q ss_pred cCCcchHHHHHHHHHHHHHC--CCeeEEeee
Q 008476 11 VSGLGKGVTASSIGVLLKAC--GLRVTCIKI 39 (564)
Q Consensus 11 ~s~~gkg~~~~s~g~ll~~~--g~~v~~~k~ 39 (564)
.-|=|||-|+|++|..|++. |+||.++.|
T Consensus 9 ytG~GKGKTTAAlGlalRA~G~G~rV~ivQF 39 (172)
T PF02572_consen 9 YTGDGKGKTTAALGLALRAAGHGMRVLIVQF 39 (172)
T ss_dssp EESSSS-HHHHHHHHHHHHHCTT--EEEEES
T ss_pred EeCCCCCchHHHHHHHHHHHhCCCEEEEEEE
Confidence 34679999999999999985 567877765
No 237
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=62.50 E-value=12 Score=41.44 Aligned_cols=39 Identities=31% Similarity=0.574 Sum_probs=35.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (564)
..|+++| .-|.||=.+++-++..|+..|++|.++-+|+|
T Consensus 96 ~vI~lvG--~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 96 QTIMLVG--LQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred eEEEEEC--CCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 4677887 69999999999999999999999999999976
No 238
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=62.38 E-value=17 Score=37.73 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=50.5
Q ss_pred eEEEEEeccCCCc--chHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHh-ccCCCEEEeCCCCCC
Q 008476 298 VRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGN 374 (564)
Q Consensus 298 ~~IavVGkY~~~~--Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~-L~~~DGIllpGGfG~ 374 (564)
+||+++.+.+... .....+.++|+..|+++.+. . ..++...... .+ ...+. ..++|.+++-||-|.
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~--~--~~~~~~~~~~------~~-~~~~~~~~~~d~vi~iGGDGT 69 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVD--S--ETYEHLPEFS------EE-DVLPLEEMDVDFIIAIGGDGT 69 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEe--c--chhhhcCccc------cc-ccccccccCCCEEEEEeCcHH
Confidence 4799997765422 12346777888888876541 0 0011110000 00 00011 137899999998663
Q ss_pred CchhHHHHHHHHHHHcCCCEEEEehhH
Q 008476 375 RGVQGKILAAKYAREHRIPYLGICLGM 401 (564)
Q Consensus 375 r~~eg~i~~ir~a~e~~iPiLGICLGm 401 (564)
.+.+++ ....++|++||=.|.
T Consensus 70 -----lL~a~~-~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 70 -----ILRIEH-KTKKDIPILGINMGT 90 (277)
T ss_pred -----HHHHHH-hcCCCCeEEEEeCCC
Confidence 456777 666789999998886
No 239
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=62.15 E-value=9.4 Score=39.65 Aligned_cols=32 Identities=38% Similarity=0.527 Sum_probs=27.9
Q ss_pred CCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 008476 12 SGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (564)
Q Consensus 12 s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyl 43 (564)
-|+||=.|+|.|...|..+|+||-.+=+||--
T Consensus 9 GGIGKST~~~Nlsaala~~G~kVl~iGCDPK~ 40 (273)
T PF00142_consen 9 GGIGKSTTASNLSAALAEMGKKVLQIGCDPKA 40 (273)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--EEEEEESSSS
T ss_pred CCcccChhhhHHHHHHHhccceeeEecccCCC
Confidence 37999999999999999999999999999963
No 240
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=61.78 E-value=14 Score=37.68 Aligned_cols=41 Identities=27% Similarity=0.481 Sum_probs=37.1
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 008476 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (564)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (564)
-|.|.| =-|.||=.+|..|+..|..+|+||-++-+||=.|.
T Consensus 2 ~ia~~g--KGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~ 42 (275)
T TIGR01287 2 QIAIYG--KGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADS 42 (275)
T ss_pred eeEEeC--CCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence 467774 78999999999999999999999999999998875
No 241
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=61.65 E-value=47 Score=32.81 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=21.4
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGI 397 (564)
.++||||+.+. +. ......++.+.+.++|+..+
T Consensus 59 ~~vdgiIi~~~--~~--~~~~~~l~~~~~~~iPvv~~ 91 (272)
T cd06300 59 QGVDAIIINPA--SP--TALNPVIEEACEAGIPVVSF 91 (272)
T ss_pred cCCCEEEEeCC--Ch--hhhHHHHHHHHHCCCeEEEE
Confidence 58999999763 11 11123456677788998765
No 242
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=61.02 E-value=14 Score=38.60 Aligned_cols=41 Identities=24% Similarity=0.458 Sum_probs=35.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln 44 (564)
|.|.|. | =-|.||=.+|+.|+..|..+|+||-++-+||=.|
T Consensus 1 ~vIav~-g-KGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~ 41 (296)
T TIGR02016 1 RIIAIY-G-KGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHD 41 (296)
T ss_pred CEEEEE-C-CCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCC
Confidence 346666 4 6899999999999999999999999999999544
No 243
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=60.59 E-value=38 Score=29.14 Aligned_cols=79 Identities=18% Similarity=0.075 Sum_probs=46.9
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCC-CcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCch
Q 008476 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPAC-DLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (564)
Q Consensus 299 ~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~-~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~ 377 (564)
+|++||- ..+...++.+.++..|+.... .... ..+... ..+...+.++|.||++=++-+-.
T Consensus 1 ~vliVGG---~~~~~~~~~~~~~~~G~~~~~------hg~~~~~~~~~--------~~l~~~i~~aD~VIv~t~~vsH~- 62 (97)
T PF10087_consen 1 SVLIVGG---REDRERRYKRILEKYGGKLIH------HGRDGGDEKKA--------SRLPSKIKKADLVIVFTDYVSHN- 62 (97)
T ss_pred CEEEEcC---CcccHHHHHHHHHHcCCEEEE------EecCCCCccch--------hHHHHhcCCCCEEEEEeCCcChH-
Confidence 4788873 233455677778888888633 3111 111000 01346789999999887655432
Q ss_pred hHHHHHHHHHHHcCCCEEE
Q 008476 378 QGKILAAKYAREHRIPYLG 396 (564)
Q Consensus 378 eg~i~~ir~a~e~~iPiLG 396 (564)
-+..+-+.|.+.++|+.=
T Consensus 63 -~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 63 -AMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred -HHHHHHHHHHHcCCcEEE
Confidence 234455567888999863
No 244
>PRK11670 antiporter inner membrane protein; Provisional
Probab=60.25 E-value=15 Score=39.73 Aligned_cols=44 Identities=30% Similarity=0.425 Sum_probs=37.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (564)
|.|-|+.| =-|.||=.+|+.|+..|...|+||-++-+|||-+-=
T Consensus 108 ~vIaV~S~-KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~ 151 (369)
T PRK11670 108 NIIAVSSG-KGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSI 151 (369)
T ss_pred EEEEEeCC-CCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence 45555544 368899999999999999999999999999998743
No 245
>PRK06696 uridine kinase; Validated
Probab=60.19 E-value=19 Score=35.73 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=36.1
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 008476 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (564)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (564)
.|.|+| .||-||-..|..|...|...|.+|..+-+|=|..-
T Consensus 24 iI~I~G--~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 24 RVAIDG--ITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred EEEEEC--CCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 567777 58889999999999999999999999999999863
No 246
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=59.29 E-value=13 Score=37.61 Aligned_cols=45 Identities=31% Similarity=0.592 Sum_probs=35.1
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccc
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV 412 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~v 412 (564)
.++||++|+= |+||+.+ ++|.. ..+|+.|||----+++...|+++
T Consensus 68 ~GvdaiiIaC-f~DPgl~----~~Re~--~~~PviGi~eAsv~~A~~vgrrf 112 (230)
T COG4126 68 QGVDAIIIAC-FSDPGLA----AARER--AAIPVIGICEASVLAALFVGRRF 112 (230)
T ss_pred cCCcEEEEEe-cCChHHH----HHHHH--hCCCceehhHHHHHHHHHhcceE
Confidence 4799999987 8887643 33332 26999999999888888888875
No 247
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=58.66 E-value=8.7 Score=37.54 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=23.5
Q ss_pred CCcchHHHHHHHHHHHHHC--CCeeEEeee
Q 008476 12 SGLGKGVTASSIGVLLKAC--GLRVTCIKI 39 (564)
Q Consensus 12 s~~gkg~~~~s~g~ll~~~--g~~v~~~k~ 39 (564)
-|=|||-|+|++|..|++. |+||.++.|
T Consensus 28 tGdGKGKTTAAlGlalRAaG~G~rV~iiQF 57 (178)
T PRK07414 28 TSSQRNFFTSVMAQALRIAGQGTPVLIVQF 57 (178)
T ss_pred eCCCCCchHHHHHHHHHHhcCCCEEEEEEE
Confidence 3569999999999999985 678888765
No 248
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=58.54 E-value=19 Score=36.49 Aligned_cols=35 Identities=34% Similarity=0.504 Sum_probs=31.9
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 008476 11 VSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (564)
Q Consensus 11 ~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (564)
=-|.||=.+++.|+..|..+|+||-++-+||=.|.
T Consensus 8 KGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~~ 42 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDS 42 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhCCCeEEEEecCccccc
Confidence 67899999999999999999999999999996544
No 249
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=56.82 E-value=73 Score=29.91 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=27.9
Q ss_pred EEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 008476 5 LVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (564)
Q Consensus 5 ~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyl 43 (564)
-||+| --|.||=.+|+.|+..| .+|-++-.||..
T Consensus 3 ~v~s~-kgG~GKSt~a~nLA~~l----~~vlliD~D~~~ 36 (179)
T cd03110 3 AVISG-KGGTGKTTVTAALAALL----KNVVLADCDVDA 36 (179)
T ss_pred EEEcC-CCCCCHHHHHHHHHHHH----hCcEEEECCCCC
Confidence 34433 46889999999999999 899999999873
No 250
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=56.74 E-value=14 Score=35.59 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=32.8
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCe----eEEeeecccc
Q 008476 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLR----VTCIKIDPYL 43 (564)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~----v~~~k~dpyl 43 (564)
|.|+|+ ||-||-..|..|..+|...|.. +..+-+|-|.
T Consensus 2 IgI~G~--sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~ 43 (194)
T PF00485_consen 2 IGIAGP--SGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY 43 (194)
T ss_dssp EEEEES--TTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred EEEECC--CCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence 778886 6779999999999999999998 7777777665
No 251
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=56.35 E-value=19 Score=38.72 Aligned_cols=39 Identities=31% Similarity=0.227 Sum_probs=34.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp 41 (564)
||.|-|+|. ||-||=.....+-..|+.+||+|..+|-|.
T Consensus 205 ~~~~~~~g~--~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~ 243 (366)
T PRK14489 205 PPLLGVVGY--SGTGKTTLLEKLIPELIARGYRIGLIKHSH 243 (366)
T ss_pred ccEEEEecC--CCCCHHHHHHHHHHHHHHcCCEEEEEEECC
Confidence 467888884 999999999999999999999999999764
No 252
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=56.16 E-value=17 Score=36.47 Aligned_cols=35 Identities=31% Similarity=0.425 Sum_probs=29.7
Q ss_pred ccCCcchHHHHHHHHHHHH-HCCCeeEEeeeccccc
Q 008476 10 VVSGLGKGVTASSIGVLLK-ACGLRVTCIKIDPYLN 44 (564)
Q Consensus 10 v~s~~gkg~~~~s~g~ll~-~~g~~v~~~k~dpyln 44 (564)
.==|.||..+|.-+|..|. .+|+||-.+-+||=-|
T Consensus 10 ~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s 45 (259)
T COG1192 10 QKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGS 45 (259)
T ss_pred cCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcch
Confidence 3346799999999999999 6779999999999543
No 253
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=56.07 E-value=18 Score=34.95 Aligned_cols=51 Identities=22% Similarity=0.312 Sum_probs=38.5
Q ss_pred cCCCEEEeCCCCCCCch--------------hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccc
Q 008476 361 KGADGILVPGGFGNRGV--------------QGKILAAKYAREHRIPYLGICLGMQVAVIEFARS 411 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~--------------eg~i~~ir~a~e~~iPiLGICLGmQll~ia~g~~ 411 (564)
+.+|++++|||||.... .....+++...+.++|+==||.-=-++..-||..
T Consensus 84 e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~~ 148 (217)
T COG3155 84 EELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGFP 148 (217)
T ss_pred HhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCCc
Confidence 46799999999997421 2355666667788999999999888887766643
No 254
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.26 E-value=28 Score=35.70 Aligned_cols=72 Identities=19% Similarity=0.179 Sum_probs=45.8
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCch
Q 008476 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (564)
Q Consensus 298 ~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~ 377 (564)
+++++++ ..+....+..+.+.|...|..+. |..... ....++|.+++-||-|.
T Consensus 1 m~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~-----------------~~~~~~d~vi~iGGDGT--- 53 (256)
T PRK14075 1 MKLGIFY-REEKEKEAKFLKEKISKEHEVVE------FCEASA-----------------SGKVTADLIIVVGGDGT--- 53 (256)
T ss_pred CEEEEEe-CccHHHHHHHHHHHHHHcCCeeE------eecccc-----------------cccCCCCEEEEECCcHH---
Confidence 4677773 33333456677788888886543 222111 12357799999997663
Q ss_pred hHHHHHHHHHHHcCCCEEEEehhH
Q 008476 378 QGKILAAKYAREHRIPYLGICLGM 401 (564)
Q Consensus 378 eg~i~~ir~a~e~~iPiLGICLGm 401 (564)
.+.+++.+ ++|++||=.|.
T Consensus 54 --~L~a~~~~---~~Pilgin~G~ 72 (256)
T PRK14075 54 --VLKAAKKV---GTPLVGFKAGR 72 (256)
T ss_pred --HHHHHHHc---CCCEEEEeCCC
Confidence 45555555 89999998885
No 255
>PRK01184 hypothetical protein; Provisional
Probab=54.65 E-value=15 Score=34.94 Aligned_cols=28 Identities=36% Similarity=0.431 Sum_probs=21.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v 34 (564)
|+.|++||+.-| ||+..| ++++..|+.+
T Consensus 1 ~~~i~l~G~~Gs--GKsT~a----~~~~~~g~~~ 28 (184)
T PRK01184 1 MKIIGVVGMPGS--GKGEFS----KIAREMGIPV 28 (184)
T ss_pred CcEEEEECCCCC--CHHHHH----HHHHHcCCcE
Confidence 788999999766 488753 3688888755
No 256
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=54.36 E-value=20 Score=34.26 Aligned_cols=36 Identities=33% Similarity=0.424 Sum_probs=31.2
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 008476 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (564)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (564)
.|++|| .||-||=.+|..|-..|+++|.+|..+--|
T Consensus 4 vIwltG--lsGsGKtTlA~~L~~~L~~~g~~~~~LDgD 39 (156)
T PF01583_consen 4 VIWLTG--LSGSGKTTLARALERRLFARGIKVYLLDGD 39 (156)
T ss_dssp EEEEES--STTSSHHHHHHHHHHHHHHTTS-EEEEEHH
T ss_pred EEEEEC--CCCCCHHHHHHHHHHHHHHcCCcEEEecCc
Confidence 588898 799999999999999999999998887655
No 257
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=53.85 E-value=28 Score=31.78 Aligned_cols=40 Identities=28% Similarity=0.334 Sum_probs=31.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (564)
|.|-|+| ..+|.||-..|..++..|..+|.+|-.+-+|++
T Consensus 1 k~i~v~s-~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~ 40 (157)
T PF13614_consen 1 KVIAVWS-PKGGVGKTTLALNLAAALARKGKKVLLIDFDFF 40 (157)
T ss_dssp EEEEEEE-SSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SS
T ss_pred CEEEEEC-CCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCC
Confidence 4555654 567999999999999999999999999988874
No 258
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=53.43 E-value=27 Score=39.45 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=29.0
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGICLGm 401 (564)
.++|.||.-||-|. ++.+++.+...++|+|||=+|.
T Consensus 261 ~~~DlVIsiGGDGT-----lL~Aar~~~~~~iPILGIN~G~ 296 (508)
T PLN02935 261 TKVDLVITLGGDGT-----VLWAASMFKGPVPPVVPFSMGS 296 (508)
T ss_pred cCCCEEEEECCcHH-----HHHHHHHhccCCCcEEEEeCCC
Confidence 47899999998664 6677787777789999998763
No 259
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=53.32 E-value=56 Score=34.71 Aligned_cols=104 Identities=19% Similarity=0.187 Sum_probs=63.4
Q ss_pred cccCCchhhhhhhhhCCCcccEEEEeeCCCCCcchhccccccCCCCCCCeeeeCCCCCcccccHHHHHhhhHHHHHHHcC
Q 008476 192 QKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLN 271 (564)
Q Consensus 192 ~ktkptq~svk~l~s~Gi~pd~lv~R~~~~l~~~~r~kisl~~~v~~~~Vi~~~dvdtiy~vp~~L~~qG~~~~i~~~l~ 271 (564)
.|=---..+++.|.+.| +|++|+|....-.. +.+|-+..+. .||..-|=..- =| .|.+.+.
T Consensus 86 ~KGEtL~DT~~tl~ayg--~D~iViRH~~egaa---~~~a~~~~~~--pvINaGDG~~q--HP----TQ~LLDl------ 146 (316)
T COG0540 86 KKGETLADTIRTLSAYG--VDAIVIRHPEEGAA---RLLAEFSGVN--PVINAGDGSHQ--HP----TQALLDL------ 146 (316)
T ss_pred cccccHHHHHHHHHhhC--CCEEEEeCccccHH---HHHHHhcCCC--ceEECCCCCCC--Cc----cHHHHHH------
Confidence 45446678999999988 99999998764333 3444444553 47777665442 22 1222211
Q ss_pred CCCCCCccchHHHHHHHhhhcCCCCceEEEEEeccCCCcchHHHHHHHHHHcCCccee
Q 008476 272 LQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRK 329 (564)
Q Consensus 272 l~~~~~~~~~~~w~~~~~~~~~~~~~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v 329 (564)
-. +.+.... -...+||++||--... .-+|.+++|...|+++.+
T Consensus 147 ----------~T---I~~~~G~-~~gl~iaivGDlkhsR-va~S~~~~L~~~ga~v~l 189 (316)
T COG0540 147 ----------YT---IREEFGR-LDGLKIAIVGDLKHSR-VAHSNIQALKRFGAEVYL 189 (316)
T ss_pred ----------HH---HHHHhCC-cCCcEEEEEccccchH-HHHHHHHHHHHcCCEEEE
Confidence 00 0111111 2358999999764332 567999999999977765
No 260
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=53.00 E-value=2.5e+02 Score=28.07 Aligned_cols=42 Identities=19% Similarity=0.182 Sum_probs=30.1
Q ss_pred EEEEEeCCccCC-cchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 008476 2 KYVLVTGGVVSG-LGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (564)
Q Consensus 2 k~i~vtggv~s~-~gkg~~~~s~g~ll~~~g~~v~~~k~dpyl 43 (564)
|.+|||...... -|=+..+..+..-|+++|++|+++=.++..
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 43 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNY 43 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCc
Confidence 556777665432 355667788999999999999998655543
No 261
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=52.86 E-value=21 Score=39.70 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=34.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp 41 (564)
||.|=|+|= |+-||-....-|=..|+.+||+|..||=|.
T Consensus 1 MkVi~IvG~--sgSGKTTLiekLI~~L~~rG~rVavIKH~h 39 (452)
T PRK14495 1 MRVYGIIGW--KDAGKTGLVERLVAAIAARGFSVSTVKHSH 39 (452)
T ss_pred CcEEEEEec--CCCCHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 677778884 899999999999999999999999999654
No 262
>PRK15453 phosphoribulokinase; Provisional
Probab=52.83 E-value=18 Score=37.96 Aligned_cols=48 Identities=17% Similarity=0.296 Sum_probs=39.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCC
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMS 51 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtm~ 51 (564)
..|-|||| ||-||=.+|.++..+|+..|.++.++..|-|=-.|-..|.
T Consensus 6 piI~ItG~--SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~ 53 (290)
T PRK15453 6 PIIAVTGS--SGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMK 53 (290)
T ss_pred cEEEEECC--CCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHh
Confidence 36889997 8999999999999999988988888888877665655443
No 263
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=52.75 E-value=17 Score=38.54 Aligned_cols=96 Identities=29% Similarity=0.532 Sum_probs=68.6
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCC
Q 008476 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLT 83 (564)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtm~p~~hgev~v~~dg~e~dldlg~yerf~~~~~~ 83 (564)
|=+|| +=|.||-....-+|+.|..+|++|.++-+||= |||-=|-+ ||+==|+-+....
T Consensus 54 iGITG--~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPS--------Sp~TGGsi------------LGDRiRM~~~~~~ 111 (323)
T COG1703 54 IGITG--VPGAGKSTLIEALGRELRERGHRVAVLAVDPS--------SPFTGGSI------------LGDRIRMQRLAVD 111 (323)
T ss_pred EEecC--CCCCchHHHHHHHHHHHHHCCcEEEEEEECCC--------CCCCCccc------------cccHhhHHhhccC
Confidence 33565 46889999999999999999999999999994 78877765 7877777665533
Q ss_pred CC----CcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCcccc
Q 008476 84 RD----NNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIG 152 (564)
Q Consensus 84 ~~----~~~t~g~iy~~vi~ker~g~ylg~tvqviph~t~~i~~~i~~~~~~p~~~~~~~~d~~i~e~ggtvg 152 (564)
.+ +..|. .+|| -++.+..+.|.-+- ..++|++||| |||
T Consensus 112 ~~vFiRs~~sr--------------G~lG-------GlS~at~~~i~~ld-------AaG~DvIIVE---TVG 153 (323)
T COG1703 112 PGVFIRSSPSR--------------GTLG-------GLSRATREAIKLLD-------AAGYDVIIVE---TVG 153 (323)
T ss_pred CCeEEeecCCC--------------ccch-------hhhHHHHHHHHHHH-------hcCCCEEEEE---ecC
Confidence 22 22222 2344 35666666666653 4589999999 555
No 264
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=52.25 E-value=67 Score=31.20 Aligned_cols=74 Identities=26% Similarity=0.478 Sum_probs=56.1
Q ss_pred cchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccc---ccc----------C
Q 008476 89 TTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTI---GDI----------E 155 (564)
Q Consensus 89 t~g~iy~~vi~ker~g~ylg~tvqviph~t~~i~~~i~~~~~~p~~~~~~~~d~~i~e~ggtv---gdi----------e 155 (564)
++|++-.+.++. .|... -..++||-=-+.|+..+..+.. .. .|++|+ .|||= .|+ -
T Consensus 27 ~sG~~l~~~L~~--ag~~~-~~~~iV~D~~~~I~~~l~~~~~------~~-~Dvvlt-tGGTG~t~RDvTpEA~~~~~dK 95 (169)
T COG0521 27 KSGPLLVELLEE--AGHNV-AAYTIVPDDKEQIRATLIALID------ED-VDVVLT-TGGTGITPRDVTPEATRPLFDK 95 (169)
T ss_pred cchhHHHHHHHH--cCCcc-ceEEEeCCCHHHHHHHHHHHhc------CC-CCEEEE-cCCccCCCCcCCHHHHHHHHhc
Confidence 499998888865 57777 7889999999999999999873 33 787765 89982 222 1
Q ss_pred cch-HHHHHHHhhhhc-CCC
Q 008476 156 SMP-FIEALGQFSYRV-GPG 173 (564)
Q Consensus 156 s~p-f~ea~rq~~~~~-~~~ 173 (564)
-+| |-|++|++.++. |..
T Consensus 96 eipGFgE~fR~~S~~~~g~~ 115 (169)
T COG0521 96 EIPGFGELFRRLSLEEIGPT 115 (169)
T ss_pred cCCcHHHHHHHhhhhcCCCc
Confidence 134 889999999888 543
No 265
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=52.15 E-value=12 Score=38.74 Aligned_cols=38 Identities=42% Similarity=0.555 Sum_probs=28.1
Q ss_pred hccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 008476 359 LLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (564)
Q Consensus 359 ~L~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGICLGm 401 (564)
..+++|.|++-||-|. .+.+++.+...++|++||=.|.
T Consensus 73 ~~~~~D~ii~lGGDGT-----~L~~~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 73 LEEGVDLIIVLGGDGT-----FLRAARLFGDYDIPILGINTGT 110 (285)
T ss_dssp HCCCSSEEEEEESHHH-----HHHHHHHCTTST-EEEEEESSS
T ss_pred cccCCCEEEEECCCHH-----HHHHHHHhccCCCcEEeecCCC
Confidence 3579999999997442 5666777666789999998763
No 266
>PF02424 ApbE: ApbE family; InterPro: IPR003374 This prokaryotic family of lipoproteins are related to ApbE, from Salmonella typhimurium. ApbE is involved in thiamine synthesis []. More specifically is may be involved in the conversion of aminoimidazole ribotide (AIR) to 4-amino-5-hydroxymethyl-2-methyl pyrimidine (HMP) during the biosynthesis of the pyrimidine moiety of thiamine.; PDB: 2O34_B 2O18_C 1VRM_A 3PND_D.
Probab=52.03 E-value=11 Score=38.46 Aligned_cols=91 Identities=26% Similarity=0.429 Sum_probs=50.4
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeec--ccccCCC--------CCC---CccccceEEEccCCccccCCCCccccc
Q 008476 11 VSGLGKGVTASSIGVLLKACGLRVTCIKID--PYLNTDA--------GTM---SPFEHGEVFVLDDGGEVDLDLGNYERF 77 (564)
Q Consensus 11 ~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d--pyln~d~--------gtm---~p~~hgev~v~~dg~e~dldlg~yerf 77 (564)
+.|++||-++--+..+|++.|.+=.++-+= =+..=.+ |-- +|-+.-.+.-+.|++=+= =|+||||
T Consensus 110 lggiaKGyavD~~~~~L~~~gi~~~lVn~GGdi~~~G~~~~g~~W~IgI~~P~~~~~~~~~~~l~~~avaT--Sg~y~r~ 187 (254)
T PF02424_consen 110 LGGIAKGYAVDRAAELLREAGITNALVNAGGDIRAIGSKPDGQPWRIGIEDPRDPGRILGVLELSNGAVAT--SGDYERY 187 (254)
T ss_dssp GHHHHHHHHHHHHHHHHHHTTTSCEEEEETTEEEEESBCTTSSBEEEEEEETCTTCCEEEEEECCTSEEEE--EETTCCC
T ss_pred cchhHHHHHHHHHHHHHHHcCCCeEEEeCCCcEEEeccCCCCCeEEEEecccCCCCceeEEEEeCCcEEEe--ccCceee
Confidence 468999999999999999998753332221 0000000 011 222222344444443110 2899999
Q ss_pred cCCCCCCCCcccchHhhHHHHhhhhcCCCC-CCeeEE
Q 008476 78 MDIKLTRDNNITTGKIYQSVIDKERKGDYL-GKTVQV 113 (564)
Q Consensus 78 ~~~~~~~~~~~t~g~iy~~vi~ker~g~yl-g~tvqv 113 (564)
...+ |+.|.++|+- |.|.-. ....||
T Consensus 188 ~~~~---------g~~~~HIidP-~tG~p~~~~~~sv 214 (254)
T PF02424_consen 188 FEID---------GKRYHHIIDP-RTGYPAESGIASV 214 (254)
T ss_dssp CCCT---------SCECES-BET-TTSSB-SSSEEEE
T ss_pred EEEC---------CEEeeeeECC-CCCcCccCCcEEE
Confidence 9654 8888888877 555544 444443
No 267
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=51.93 E-value=25 Score=35.94 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=33.4
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 008476 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (564)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (564)
|.+..+-=.|.||=.+|+.++..|..+|.+|.++-.||=
T Consensus 4 i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~ 42 (241)
T PRK13886 4 IHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPV 42 (241)
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 444444568999999999999999999999999999985
No 268
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.92 E-value=18 Score=33.74 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=28.5
Q ss_pred HhccCCCEEEeCCCCCCCchhHHHHHHHHHHH--cCCCEEEEeh
Q 008476 358 KLLKGADGILVPGGFGNRGVQGKILAAKYARE--HRIPYLGICL 399 (564)
Q Consensus 358 ~~L~~~DGIllpGGfG~r~~eg~i~~ir~a~e--~~iPiLGICL 399 (564)
+.+.++|.|++-||-.-|.+.-..+-++...| .+.|+.|+|+
T Consensus 81 e~~n~aDvvVLlGGLaMP~~gv~~d~~kel~ee~~~kkliGvCf 124 (154)
T COG4090 81 EELNSADVVVLLGGLAMPKIGVTPDDAKELLEELGNKKLIGVCF 124 (154)
T ss_pred cccccccEEEEEcccccCcCCCCHHHHHHHHHhcCCCceEEeeH
Confidence 34667999999999766654333344444433 4679999996
No 269
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=51.75 E-value=26 Score=32.52 Aligned_cols=37 Identities=32% Similarity=0.284 Sum_probs=29.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (564)
+-|.|+|. |+-||=..+..|-+.|+++|++|..+|=+
T Consensus 1 pvv~VvG~--~~sGKTTl~~~Li~~l~~~g~~v~~ik~~ 37 (140)
T PF03205_consen 1 PVVQVVGP--KNSGKTTLIRKLINELKRRGYRVAVIKHT 37 (140)
T ss_dssp -EEEEEES--TTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred CEEEEECC--CCCCHHHHHHHHHHHHhHcCCceEEEEEc
Confidence 35778886 89999999999999999999999988754
No 270
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=51.66 E-value=14 Score=39.30 Aligned_cols=62 Identities=24% Similarity=0.348 Sum_probs=44.7
Q ss_pred cchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHHHHHHHHH
Q 008476 310 SDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYARE 389 (564)
Q Consensus 310 ~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~eg~i~~ir~a~e 389 (564)
+++-.-+.+.|..+|++-.+ +.-+++. +.+..+|.||=.||-|. .+.+....+.
T Consensus 74 kn~~~~~~~~l~k~gieskl------v~R~~ls---------------q~i~waD~VisvGGDGT-----fL~Aasrv~~ 127 (395)
T KOG4180|consen 74 KNAIKFCQEELSKAGIESKL------VSRNDLS---------------QPIRWADMVISVGGDGT-----FLLAASRVID 127 (395)
T ss_pred HHHHHHHHHHHhhCCcceee------eehhhcc---------------CcCchhhEEEEecCccc-----eeehhhhhhc
Confidence 45666889999999999654 3334442 34778899999998775 3344444778
Q ss_pred cCCCEEEE
Q 008476 390 HRIPYLGI 397 (564)
Q Consensus 390 ~~iPiLGI 397 (564)
.++|++||
T Consensus 128 ~~~PViGv 135 (395)
T KOG4180|consen 128 DSKPVIGV 135 (395)
T ss_pred cCCceeee
Confidence 89999998
No 271
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=51.16 E-value=30 Score=33.95 Aligned_cols=40 Identities=33% Similarity=0.500 Sum_probs=33.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyl 43 (564)
|.|++-| .+|.||=.|+|=|+..++.+|.+|.++-+|.|-
T Consensus 2 ~vi~lvG--ptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 2 KVIALVG--PTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEEE--STTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEEEC--CCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 5667777 489999999999999999999999999999885
No 272
>PRK06179 short chain dehydrogenase; Provisional
Probab=50.99 E-value=17 Score=36.27 Aligned_cols=34 Identities=38% Similarity=0.559 Sum_probs=26.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp 41 (564)
|.|+||||- |+||+ ++.+.|.++|++|.+.--||
T Consensus 5 ~~vlVtGas-g~iG~-----~~a~~l~~~g~~V~~~~r~~ 38 (270)
T PRK06179 5 KVALVTGAS-SGIGR-----ATAEKLARAGYRVFGTSRNP 38 (270)
T ss_pred CEEEEecCC-CHHHH-----HHHHHHHHCCCEEEEEeCCh
Confidence 679999985 77775 45567778999999877665
No 273
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.54 E-value=38 Score=35.59 Aligned_cols=89 Identities=24% Similarity=0.237 Sum_probs=49.9
Q ss_pred EEEEEeccCCCc--chHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCc
Q 008476 299 RIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (564)
Q Consensus 299 ~IavVGkY~~~~--Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~ 376 (564)
+|+++.+..... +....+.+.|+..|+++.+. ...++.+..... .+.......+++|-|+.-||-|.
T Consensus 6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~----~~~~~~~~~~~~-----~~~~~~~~~~~~d~vi~~GGDGt-- 74 (295)
T PRK01231 6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILD----EETAEVLPGHGL-----QTVSRKLLGEVCDLVIVVGGDGS-- 74 (295)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEe----cchhhhcCcccc-----cccchhhcccCCCEEEEEeCcHH--
Confidence 699996544321 23446777787777775431 111111110000 00000112246899999997553
Q ss_pred hhHHHHHHHHHHHcCCCEEEEehhH
Q 008476 377 VQGKILAAKYAREHRIPYLGICLGM 401 (564)
Q Consensus 377 ~eg~i~~ir~a~e~~iPiLGICLGm 401 (564)
.+.+++.+...++|++||=.|.
T Consensus 75 ---~l~~~~~~~~~~~Pvlgin~G~ 96 (295)
T PRK01231 75 ---LLGAARALARHNVPVLGINRGR 96 (295)
T ss_pred ---HHHHHHHhcCCCCCEEEEeCCc
Confidence 4566676667789999999875
No 274
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=49.18 E-value=31 Score=32.87 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=30.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
++|+|+|. .|-||...+..|..-|..+|++|...
T Consensus 4 ~~IvieG~--~GsGKsT~~~~L~~~l~~~g~~v~~~ 37 (195)
T TIGR00041 4 MFIVIEGI--DGAGKTTQANLLKKLLQENGYDVLFT 37 (195)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 78999995 78899999999999999999998643
No 275
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=49.05 E-value=27 Score=34.44 Aligned_cols=33 Identities=33% Similarity=0.418 Sum_probs=28.6
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
-|..|| +||-||-.+|..+-..|.++|++|..+
T Consensus 25 viW~TG--LSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 25 VIWFTG--LSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred EEEeec--CCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 567788 899999999999999999999976443
No 276
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=49.04 E-value=69 Score=30.80 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=21.8
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGI 397 (564)
.++|||++.+..... .. ++.+.+.++|+..+
T Consensus 54 ~~~d~iii~~~~~~~-----~~-~~~~~~~~ipvv~~ 84 (264)
T cd06267 54 RRVDGIILAPSRLDD-----EL-LEELAALGIPVVLV 84 (264)
T ss_pred cCcCEEEEecCCcch-----HH-HHHHHHcCCCEEEe
Confidence 489999998754321 12 67777889998765
No 277
>PRK06953 short chain dehydrogenase; Provisional
Probab=48.97 E-value=22 Score=34.41 Aligned_cols=34 Identities=35% Similarity=0.525 Sum_probs=25.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (564)
||.++||||. ++||..++ +.|.++|++|.++-.+
T Consensus 1 ~~~vlvtG~s-g~iG~~la-----~~L~~~G~~v~~~~r~ 34 (222)
T PRK06953 1 MKTVLIVGAS-RGIGREFV-----RQYRADGWRVIATARD 34 (222)
T ss_pred CceEEEEcCC-CchhHHHH-----HHHHhCCCEEEEEECC
Confidence 7889999996 88887654 4455689999887443
No 278
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=48.86 E-value=25 Score=36.30 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=27.8
Q ss_pred CEEEEEeCCccCCcchHHHHH-HHHHHHHHCCCeeEEee
Q 008476 1 MKYVLVTGGVVSGLGKGVTAS-SIGVLLKACGLRVTCIK 38 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~-s~g~ll~~~g~~v~~~k 38 (564)
||.+|++||+ |-.+..+ .+..-|+.+|+.|+++-
T Consensus 1 ~~i~~~~g~~----~g~~~~~~~La~~L~~~g~eV~vv~ 35 (348)
T TIGR01133 1 KKVVLAAGGT----GGHIFPALAVAEELIKRGVEVLWLG 35 (348)
T ss_pred CeEEEEeCcc----HHHHhHHHHHHHHHHhCCCEEEEEe
Confidence 7889999988 4456554 89999999999998874
No 279
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=48.67 E-value=16 Score=37.50 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=27.1
Q ss_pred CcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 008476 13 GLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (564)
Q Consensus 13 ~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (564)
||||-.|++-+..-|..+|.||-.+=+||=
T Consensus 11 GIGKSTts~N~aAAla~~GkkVl~vGCDPK 40 (278)
T COG1348 11 GIGKSTTSQNLAAALAELGKKVLIVGCDPK 40 (278)
T ss_pred CcCcchhHHHHHHHHHHcCCeEEEEcCCCC
Confidence 789999999999999999999999999984
No 280
>PRK05693 short chain dehydrogenase; Provisional
Probab=48.15 E-value=20 Score=36.05 Aligned_cols=32 Identities=38% Similarity=0.557 Sum_probs=24.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k 38 (564)
||-++|||| -||||+.++ +.|..+|++|.+.-
T Consensus 1 mk~vlItGa-sggiG~~la-----~~l~~~G~~V~~~~ 32 (274)
T PRK05693 1 MPVVLITGC-SSGIGRALA-----DAFKAAGYEVWATA 32 (274)
T ss_pred CCEEEEecC-CChHHHHHH-----HHHHHCCCEEEEEe
Confidence 688999998 478887655 45667899887753
No 281
>PRK07102 short chain dehydrogenase; Provisional
Probab=48.07 E-value=19 Score=35.32 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=25.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (564)
||-|+||||- +|||+.++- .|-++|++|.+.=.+
T Consensus 1 ~~~vlItGas-~giG~~~a~-----~l~~~G~~Vi~~~r~ 34 (243)
T PRK07102 1 MKKILIIGAT-SDIARACAR-----RYAAAGARLYLAARD 34 (243)
T ss_pred CcEEEEEcCC-cHHHHHHHH-----HHHhcCCEEEEEeCC
Confidence 6889999986 778766554 455679988877544
No 282
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=47.98 E-value=19 Score=39.31 Aligned_cols=34 Identities=29% Similarity=0.241 Sum_probs=30.3
Q ss_pred CcchHHHHHHHHHHHHHCCCeeEEeee-cccccCC
Q 008476 13 GLGKGVTASSIGVLLKACGLRVTCIKI-DPYLNTD 46 (564)
Q Consensus 13 ~~gkg~~~~s~g~ll~~~g~~v~~~k~-dpyln~d 46 (564)
|.||=.+++.++..|..+|+||-+|-+ ||=-|.-
T Consensus 117 GVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~nlt 151 (387)
T PHA02519 117 GVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTAS 151 (387)
T ss_pred CCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCcc
Confidence 569999999999999999999999996 9966643
No 283
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.07 E-value=29 Score=38.72 Aligned_cols=31 Identities=32% Similarity=0.476 Sum_probs=28.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (564)
|.|-||| +=||..|++=|..+|++.|+++.+
T Consensus 122 ~~I~VTG----TnGKTTTt~ml~~iL~~~g~~~~~ 152 (498)
T PRK02006 122 KVLAITG----TNGKTTTTALTGLLCERAGKKVAV 152 (498)
T ss_pred CEEEEEC----CCcHHHHHHHHHHHHHHcCCCEEE
Confidence 5688888 479999999999999999999887
No 284
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=46.94 E-value=85 Score=31.06 Aligned_cols=34 Identities=26% Similarity=0.148 Sum_probs=22.8
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEe
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 398 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGIC 398 (564)
.++||||+.+... ......++.++++++|+.-+-
T Consensus 56 ~~vdgiii~~~~~----~~~~~~l~~~~~~~ipvV~~~ 89 (271)
T cd06312 56 AKPDGIVVTIPDP----DALDPAIKRAVAAGIPVISFN 89 (271)
T ss_pred hCCCEEEEeCCCh----HHhHHHHHHHHHCCCeEEEeC
Confidence 5899999976321 112345677778889988774
No 285
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=46.90 E-value=31 Score=37.69 Aligned_cols=39 Identities=26% Similarity=0.508 Sum_probs=33.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHH----CCCeeEEeeeccc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKA----CGLRVTCIKIDPY 42 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~----~g~~v~~~k~dpy 42 (564)
+.|++.|-. |.||=.|++.++..|+. +|.+|.++-+|+|
T Consensus 175 ~vi~lvGpt--GvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~ 217 (388)
T PRK12723 175 RVFILVGPT--GVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY 217 (388)
T ss_pred eEEEEECCC--CCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc
Confidence 356667765 99999999999998873 5899999999988
No 286
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=46.74 E-value=18 Score=35.77 Aligned_cols=29 Identities=45% Similarity=0.786 Sum_probs=21.9
Q ss_pred ccCCcchHHHHHHHHHHHHHC--CCeeEEee
Q 008476 10 VVSGLGKGVTASSIGVLLKAC--GLRVTCIK 38 (564)
Q Consensus 10 v~s~~gkg~~~~s~g~ll~~~--g~~v~~~k 38 (564)
|..|=|||-|+|.+|..|++. |++|-++.
T Consensus 33 V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQ 63 (198)
T COG2109 33 VFTGNGKGKTTAALGLALRALGHGLRVGVVQ 63 (198)
T ss_pred EEecCCCChhHHHHHHHHHHhcCCCEEEEEE
Confidence 345679999999999999985 56665543
No 287
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=46.49 E-value=92 Score=30.77 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=21.4
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGI 397 (564)
.++||||+.+...+ .....++.+.+.++|+..+
T Consensus 56 ~~vdgiIi~~~~~~----~~~~~~~~~~~~~iPvV~~ 88 (275)
T cd06320 56 KGYKGLLFSPISDV----NLVPAVERAKKKGIPVVNV 88 (275)
T ss_pred hCCCEEEECCCChH----HhHHHHHHHHHCCCeEEEE
Confidence 47999988653221 1223466777889998765
No 288
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=46.13 E-value=69 Score=30.28 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=22.2
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGI 397 (564)
.++|||++++.... ...+.+.+.+.++|++.+
T Consensus 57 ~~~d~ii~~~~~~~-----~~~~~~~~~~~~ip~v~~ 88 (269)
T cd01391 57 QGVDGIIGPPSSSS-----ALAVVELAAAAGIPVVSL 88 (269)
T ss_pred cCCCEEEecCCCHH-----HHHHHHHHHHcCCcEEEe
Confidence 47999998874321 112566777889999776
No 289
>PRK04148 hypothetical protein; Provisional
Probab=45.98 E-value=22 Score=33.11 Aligned_cols=108 Identities=23% Similarity=0.291 Sum_probs=70.3
Q ss_pred CcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCCCCCcccchH
Q 008476 13 GLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLTRDNNITTGK 92 (564)
Q Consensus 13 ~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtm~p~~hgev~v~~dg~e~dldlg~yerf~~~~~~~~~~~t~g~ 92 (564)
|+|-| .++...|+..|+.|+.+-+||..--++ -+.|--+|.+|--+.|+++ |+-+ + -
T Consensus 24 G~GfG---~~vA~~L~~~G~~ViaIDi~~~aV~~a-----~~~~~~~v~dDlf~p~~~~--y~~a---~----------l 80 (134)
T PRK04148 24 GIGFY---FKVAKKLKESGFDVIVIDINEKAVEKA-----KKLGLNAFVDDLFNPNLEI--YKNA---K----------L 80 (134)
T ss_pred EecCC---HHHHHHHHHCCCEEEEEECCHHHHHHH-----HHhCCeEEECcCCCCCHHH--HhcC---C----------E
Confidence 45544 456778889999999999999843222 2346678888887766532 2211 1 1
Q ss_pred hhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHHHHHHhhhhcCC
Q 008476 93 IYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGP 172 (564)
Q Consensus 93 iy~~vi~ker~g~ylg~tvqviph~t~~i~~~i~~~~~~p~~~~~~~~d~~i~e~ggtvgdies~pf~ea~rq~~~~~~~ 172 (564)
|| -+=| +-|++.-|.++|+ .-++|++|.=+||-. .++.||...-+
T Consensus 81 iy-----------------sirp--p~el~~~~~~la~------~~~~~~~i~~l~~e~----------~~~~~kl~ny~ 125 (134)
T PRK04148 81 IY-----------------SIRP--PRDLQPFILELAK------KINVPLIIKPLSGEE----------PIKELKLINYK 125 (134)
T ss_pred EE-----------------EeCC--CHHHHHHHHHHHH------HcCCCEEEEcCCCCC----------CCcceEEEecC
Confidence 11 1223 5799999999996 789999999999853 33455555444
Q ss_pred CCEEEE
Q 008476 173 GNFCLI 178 (564)
Q Consensus 173 ~~~~~~ 178 (564)
...+|+
T Consensus 126 ~~~~y~ 131 (134)
T PRK04148 126 GKPIYV 131 (134)
T ss_pred CeEEEE
Confidence 444444
No 290
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=45.40 E-value=34 Score=34.76 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=34.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (564)
|-|.||++ -.|.||-.+|..++..|...|.||-+|-.|+-
T Consensus 104 ~vi~vts~-~~g~Gktt~a~nLA~~la~~g~~VllID~D~~ 143 (274)
T TIGR03029 104 KALAVVSA-KSGEGCSYIAANLAIVFSQLGEKTLLIDANLR 143 (274)
T ss_pred eEEEEECC-CCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 55666655 58999999999999999999999999999864
No 291
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=45.34 E-value=89 Score=34.89 Aligned_cols=158 Identities=16% Similarity=0.183 Sum_probs=97.1
Q ss_pred hCCCcccEEEEeeCCCCCcchhccccccCCCCCCCeeeeCCCCCcccccHHHHHhhhHHHHHHHcCCCCCCCccchHHHH
Q 008476 206 GQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWT 285 (564)
Q Consensus 206 s~Gi~pd~lv~R~~~~l~~~~r~kisl~~~v~~~~Vi~~~dvdtiy~vp~~L~~qG~~~~i~~~l~l~~~~~~~~~~~w~ 285 (564)
.-|.....-++|-+.-+..... -.||-+.-++=.|+ .++. +|-..+.+--.++...++..+.. .+....|.
T Consensus 99 dpgy~~~lp~aR~Dvf~~~~~~---~kF~E~N~Dgssgm--~~~~-~l~~~~~~~~~~~~f~~~~~v~~---~~~~~~~v 169 (445)
T PF14403_consen 99 DPGYDSPLPIARLDVFLTEDGS---FKFCEFNADGSSGM--NEDD-ELARIFLELPAMQEFAERYRVEP---LPLFQSWV 169 (445)
T ss_pred CCCCCCcCcceeeeEEEcCCCc---eEEEEecCCCcccc--chhH-HHHHHHHhhHHHHHHHhhcCccC---cchHHHHH
Confidence 3455555566777665654322 55777777777676 5566 77888888888888888777753 33445563
Q ss_pred H-H---HhhhcCCCCceEEEEEeccCCCc--chHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHh
Q 008476 286 S-R---AEICDGLHEPVRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 359 (564)
Q Consensus 286 ~-~---~~~~~~~~~~~~IavVGkY~~~~--Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~ 359 (564)
+ + ........++++|||| ||.+.. +-+.-..+.++..|+.+.+ .+.. .
T Consensus 170 d~~l~~y~~~~~~~~~P~IAIv-Df~~~~~~~Ef~~f~~~f~~~G~~~vI------~d~~-------------------~ 223 (445)
T PF14403_consen 170 DALLDIYRTFGGRVEKPNIAIV-DFLEYPTLSEFEVFQRLFEEHGYDCVI------CDPR-------------------D 223 (445)
T ss_pred HHHHHHHHHhcCcCCCCcEEEE-ecccCCccchHHHHHHHHHHcCCceEe------cChH-------------------H
Confidence 3 2 2233334557899999 776543 3355788889999999876 3332 3
Q ss_pred ccCCCEEEeCCCCCC----C-c--------hhHHHHHHHHHHHcCCCEEEEe
Q 008476 360 LKGADGILVPGGFGN----R-G--------VQGKILAAKYAREHRIPYLGIC 398 (564)
Q Consensus 360 L~~~DGIllpGGfG~----r-~--------~eg~i~~ir~a~e~~iPiLGIC 398 (564)
|+--||.+..||+-- | - ..+.-.+++..++..++++|==
T Consensus 224 L~y~~g~L~~~~~~ID~VyRR~Vt~e~l~~~d~~~~li~Ay~~~av~~vgsf 275 (445)
T PF14403_consen 224 LEYRDGRLYAGGRPIDAVYRRFVTSELLERYDEVQPLIQAYRDGAVCMVGSF 275 (445)
T ss_pred ceecCCEEEECCEeeehhhHhhhhHHhhhccccchHHHHHHhcCCeEEecch
Confidence 444578877776422 1 0 0123334455566677777753
No 292
>PRK06940 short chain dehydrogenase; Provisional
Probab=45.11 E-value=29 Score=35.18 Aligned_cols=31 Identities=23% Similarity=0.482 Sum_probs=23.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (564)
|.++|||+ ||||+.++- .|. +|++|.+.=.|
T Consensus 3 k~~lItGa--~gIG~~la~-----~l~-~G~~Vv~~~r~ 33 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIAR-----RVG-AGKKVLLADYN 33 (275)
T ss_pred CEEEEECC--ChHHHHHHH-----HHh-CCCEEEEEeCC
Confidence 78999997 899987754 343 69999886443
No 293
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=44.85 E-value=66 Score=33.52 Aligned_cols=38 Identities=21% Similarity=0.449 Sum_probs=30.6
Q ss_pred HhccCCCEEEeCCCCCCCc-h-hHHHHHHHHHHHcCCCEE
Q 008476 358 KLLKGADGILVPGGFGNRG-V-QGKILAAKYAREHRIPYL 395 (564)
Q Consensus 358 ~~L~~~DGIllpGGfG~r~-~-eg~i~~ir~a~e~~iPiL 395 (564)
+.|...++++|.+|-|... + ..+-+.++|++++++|+.
T Consensus 97 k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP~V 136 (306)
T KOG3974|consen 97 KLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVPLV 136 (306)
T ss_pred HHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCcEE
Confidence 4578999999999988643 2 556678899999999986
No 294
>PRK05854 short chain dehydrogenase; Provisional
Probab=44.81 E-value=22 Score=36.96 Aligned_cols=30 Identities=40% Similarity=0.520 Sum_probs=23.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|.++||||- ||||+.++ +.|..+|++|.+.
T Consensus 15 k~~lITGas-~GIG~~~a-----~~La~~G~~Vil~ 44 (313)
T PRK05854 15 KRAVVTGAS-DGLGLGLA-----RRLAAAGAEVILP 44 (313)
T ss_pred CEEEEeCCC-ChHHHHHH-----HHHHHCCCEEEEE
Confidence 679999995 89998665 4466789988765
No 295
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.76 E-value=50 Score=34.22 Aligned_cols=35 Identities=29% Similarity=0.301 Sum_probs=25.8
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHc-CCCEEEEeh-h
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREH-RIPYLGICL-G 400 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~-~iPiLGICL-G 400 (564)
.++|-+++=||-|. .+.+++.+... ++|++||=+ |
T Consensus 38 ~~~D~vi~lGGDGT-----~L~a~~~~~~~~~~pilgIn~~G 74 (264)
T PRK03501 38 KNANIIVSIGGDGT-----FLQAVRKTGFREDCLYAGISTKD 74 (264)
T ss_pred CCccEEEEECCcHH-----HHHHHHHhcccCCCeEEeEecCC
Confidence 35689999997663 56667665443 789999988 6
No 296
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=44.71 E-value=33 Score=35.51 Aligned_cols=40 Identities=28% Similarity=0.438 Sum_probs=29.7
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 008476 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (564)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (564)
+|+|.|.==-|.||=.+|.-|+.-|...|+||-++-+|-|
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~ 40 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIR 40 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TT
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3555555556889999999999999999999999999986
No 297
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.28 E-value=19 Score=37.21 Aligned_cols=36 Identities=31% Similarity=0.301 Sum_probs=29.4
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGICLGm 401 (564)
+++|.+++=||-|. ++.+++.+...++|++||=+|.
T Consensus 32 ~~~D~vi~iGGDGT-----~L~a~~~~~~~~iPilGIN~G~ 67 (259)
T PRK00561 32 DGADYLFVLGGDGF-----FVSTAANYNCAGCKVVGINTGH 67 (259)
T ss_pred CCCCEEEEECCcHH-----HHHHHHHhcCCCCcEEEEecCC
Confidence 46799999998663 6778888777899999999884
No 298
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=44.27 E-value=34 Score=29.18 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=29.6
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCC
Q 008476 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG 370 (564)
Q Consensus 299 ~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpG 370 (564)
|||+=. ....|.++|+..|+++. +-+ . +..++++|+++++|
T Consensus 3 kIAVE~-------~Ls~v~~~L~~~GyeVv--------~l~---~-------------~~~~~~~daiVvtG 43 (80)
T PF03698_consen 3 KIAVEE-------GLSNVKEALREKGYEVV--------DLE---N-------------EQDLQNVDAIVVTG 43 (80)
T ss_pred eEEecC-------CchHHHHHHHHCCCEEE--------ecC---C-------------ccccCCcCEEEEEC
Confidence 566652 45689999999999982 211 1 03478999999999
No 299
>PRK07890 short chain dehydrogenase; Provisional
Probab=44.05 E-value=27 Score=34.39 Aligned_cols=32 Identities=31% Similarity=0.393 Sum_probs=24.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~ 39 (564)
|.|||||| -++||+- +.+.|-++|++|.+.-.
T Consensus 6 k~vlItGa-~~~IG~~-----la~~l~~~G~~V~~~~r 37 (258)
T PRK07890 6 KVVVVSGV-GPGLGRT-----LAVRAARAGADVVLAAR 37 (258)
T ss_pred CEEEEECC-CCcHHHH-----HHHHHHHcCCEEEEEeC
Confidence 78999998 5677754 55666788998887743
No 300
>PRK06101 short chain dehydrogenase; Provisional
Probab=43.85 E-value=25 Score=34.54 Aligned_cols=33 Identities=33% Similarity=0.464 Sum_probs=25.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~ 39 (564)
||-++||||. +|||+.++ +.|.++|++|.+.=-
T Consensus 1 ~~~vlItGas-~giG~~la-----~~L~~~G~~V~~~~r 33 (240)
T PRK06101 1 MTAVLITGAT-SGIGKQLA-----LDYAKQGWQVIACGR 33 (240)
T ss_pred CcEEEEEcCC-cHHHHHHH-----HHHHhCCCEEEEEEC
Confidence 5789999995 88886654 566678999987633
No 301
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=43.61 E-value=62 Score=31.09 Aligned_cols=55 Identities=25% Similarity=0.278 Sum_probs=42.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc-cCCCCCCCccccce
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL-NTDAGTMSPFEHGE 57 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyl-n~d~gtm~p~~hge 57 (564)
||.+=||| .|+-||=.....|-+.|+.+||+|..+|-++== .+|.--=..|.|.+
T Consensus 2 ~~Il~ivG--~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~~~~D~~GkDs~r~~~ 57 (161)
T COG1763 2 MKILGIVG--YKNSGKTTLIEKLVRKLKARGYRVATVKHAHHDFDLDKPGKDTYRHRK 57 (161)
T ss_pred CcEEEEEe--cCCCChhhHHHHHHHHHHhCCcEEEEEEecCCCCCCCCCCCccchhhc
Confidence 35556666 577889999999999999999999999987653 66666666666654
No 302
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=43.48 E-value=19 Score=36.88 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=30.3
Q ss_pred ccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 008476 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (564)
Q Consensus 360 L~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGICLGm 401 (564)
+.++|.+++=||-|. ++.+++.+...++|+|||=+|.
T Consensus 23 ~~~~Dlvi~iGGDGT-----lL~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 23 IEEADVIVALGGDGF-----MLQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred cccCCEEEEECCCHH-----HHHHHHHhcCCCCeEEEEeCCC
Confidence 456899999998663 6778888777899999999885
No 303
>PRK05439 pantothenate kinase; Provisional
Probab=43.38 E-value=38 Score=35.95 Aligned_cols=41 Identities=27% Similarity=0.407 Sum_probs=35.5
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHC--CCeeEEeeecccccC
Q 008476 3 YVLVTGGVVSGLGKGVTASSIGVLLKAC--GLRVTCIKIDPYLNT 45 (564)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~--g~~v~~~k~dpyln~ 45 (564)
.|.|||++ |-||=.+|..|-.+|+.. |.+|.++-+|-|+.-
T Consensus 88 iIgIaG~~--gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~ 130 (311)
T PRK05439 88 IIGIAGSV--AVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYP 130 (311)
T ss_pred EEEEECCC--CCCHHHHHHHHHHHHHhhCCCCceEEEeccccccC
Confidence 58899984 678999999999999874 789999999999864
No 304
>PRK06851 hypothetical protein; Provisional
Probab=43.37 E-value=39 Score=36.68 Aligned_cols=38 Identities=26% Similarity=0.447 Sum_probs=33.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe--eecc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI--KIDP 41 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~--k~dp 41 (564)
|.+++||| +|.||-.+...|+..|..+|++|..+ -.||
T Consensus 31 ~~~il~G~--pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~ 70 (367)
T PRK06851 31 RIFILKGG--PGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDN 70 (367)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 67899998 79999999999999999999999987 4455
No 305
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=43.14 E-value=1e+02 Score=31.84 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=50.1
Q ss_pred eccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHHH
Q 008476 304 GKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILA 383 (564)
Q Consensus 304 GkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~eg~i~~ 383 (564)
|||. +..-+.++++.+|+++ +.|-+.-++..+-. .+.+|+.+..-+--++|+-.|-+..+..+..
T Consensus 17 gky~----s~~~~~~ai~aSg~~i-vTva~rR~~~~~~~----------~~~~~~~i~~~~~~~lpNTaG~~ta~eAv~~ 81 (248)
T cd04728 17 GKYP----SPAIMKEAIEASGAEI-VTVALRRVNIGDPG----------GESFLDLLDKSGYTLLPNTAGCRTAEEAVRT 81 (248)
T ss_pred CCCC----CHHHHHHHHHHhCCCE-EEEEEEecccCCCC----------cchHHhhccccCCEECCCCCCCCCHHHHHHH
Confidence 5887 6678889999999998 45677777642211 1235666655455789998888877777888
Q ss_pred HHHHHH
Q 008476 384 AKYARE 389 (564)
Q Consensus 384 ir~a~e 389 (564)
++.+||
T Consensus 82 a~lare 87 (248)
T cd04728 82 ARLARE 87 (248)
T ss_pred HHHHHH
Confidence 877776
No 306
>PRK06924 short chain dehydrogenase; Provisional
Probab=42.97 E-value=36 Score=33.38 Aligned_cols=31 Identities=39% Similarity=0.666 Sum_probs=23.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
||.|+||||- +|||+.+ .+-|-++|++|.++
T Consensus 1 ~k~vlItGas-ggiG~~i-----a~~l~~~g~~V~~~ 31 (251)
T PRK06924 1 MRYVIITGTS-QGLGEAI-----ANQLLEKGTHVISI 31 (251)
T ss_pred CcEEEEecCC-chHHHHH-----HHHHHhcCCEEEEE
Confidence 7899999975 6777655 45566789988775
No 307
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=42.83 E-value=28 Score=34.06 Aligned_cols=30 Identities=40% Similarity=0.577 Sum_probs=22.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (564)
||-|+||||. +|||+.+ .+.|-++|++|.+
T Consensus 2 ~k~ilItGas-~giG~~l-----a~~l~~~g~~v~~ 31 (248)
T PRK06947 2 RKVVLITGAS-RGIGRAT-----AVLAAARGWSVGI 31 (248)
T ss_pred CcEEEEeCCC-CcHHHHH-----HHHHHHCCCEEEE
Confidence 5789999985 7888764 4556677887643
No 308
>PRK08177 short chain dehydrogenase; Provisional
Probab=42.60 E-value=37 Score=32.97 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=25.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (564)
||-++||||. ++||+. +.+.|.++|++|..+-.+
T Consensus 1 ~k~vlItG~s-g~iG~~-----la~~l~~~G~~V~~~~r~ 34 (225)
T PRK08177 1 KRTALIIGAS-RGLGLG-----LVDRLLERGWQVTATVRG 34 (225)
T ss_pred CCEEEEeCCC-chHHHH-----HHHHHHhCCCEEEEEeCC
Confidence 6889999994 566654 566777889998876544
No 309
>PRK06398 aldose dehydrogenase; Validated
Probab=42.44 E-value=26 Score=34.96 Aligned_cols=30 Identities=43% Similarity=0.553 Sum_probs=23.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|.++|||| -+|||+-+ .+.|.++|++|.+.
T Consensus 7 k~vlItGa-s~gIG~~i-----a~~l~~~G~~Vi~~ 36 (258)
T PRK06398 7 KVAIVTGG-SQGIGKAV-----VNRLKEEGSNVINF 36 (258)
T ss_pred CEEEEECC-CchHHHHH-----HHHHHHCCCeEEEE
Confidence 78999998 47888764 46777899998865
No 310
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=42.37 E-value=78 Score=32.46 Aligned_cols=50 Identities=26% Similarity=0.397 Sum_probs=30.5
Q ss_pred cCCCEEEeCCCCCCCch--hHHHHHHHHHHHcCCCEEEE--ehhHHHHHHHhcccccc
Q 008476 361 KGADGILVPGGFGNRGV--QGKILAAKYAREHRIPYLGI--CLGMQVAVIEFARSVLN 414 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~--eg~i~~ir~a~e~~iPiLGI--CLGmQll~ia~g~~vlg 414 (564)
++.|-|...-|||--.. ...+-+=....-.++|+.|+ |.|| ++.||.+.|
T Consensus 69 ~diD~icyTKGPGmgaPL~~vaivaRtlsllw~kPlv~VNHCigH----IEMGR~iTg 122 (336)
T KOG2708|consen 69 DDIDCICYTKGPGMGAPLSVVAIVARTLSLLWNKPLVGVNHCIGH----IEMGREITG 122 (336)
T ss_pred hhCCEEEEcCCCCCCCchhhHHHHHHHHHHHhCCCcccchhhhhh----hhhcceecc
Confidence 46788999888876432 22222111123358999997 8777 566776643
No 311
>PRK12742 oxidoreductase; Provisional
Probab=42.02 E-value=29 Score=33.66 Aligned_cols=29 Identities=34% Similarity=0.462 Sum_probs=22.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (564)
|.|+|||| -+|||+-+ .+.|.++|++|.+
T Consensus 7 k~vlItGa-sggIG~~~-----a~~l~~~G~~v~~ 35 (237)
T PRK12742 7 KKVLVLGG-SRGIGAAI-----VRRFVTDGANVRF 35 (237)
T ss_pred CEEEEECC-CChHHHHH-----HHHHHHCCCEEEE
Confidence 78999998 67888764 4677788988764
No 312
>PRK08303 short chain dehydrogenase; Provisional
Probab=41.99 E-value=26 Score=36.48 Aligned_cols=30 Identities=40% Similarity=0.607 Sum_probs=23.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|.++||||- ||||+.++ +.|.+.|++|.+.
T Consensus 9 k~~lITGgs-~GIG~aia-----~~la~~G~~Vv~~ 38 (305)
T PRK08303 9 KVALVAGAT-RGAGRGIA-----VELGAAGATVYVT 38 (305)
T ss_pred CEEEEeCCC-chHHHHHH-----HHHHHCCCEEEEE
Confidence 789999986 78887654 5566789998765
No 313
>PRK03846 adenylylsulfate kinase; Provisional
Probab=41.42 E-value=42 Score=32.54 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=32.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyl 43 (564)
+.|.+||. ||-||=..+..|..+|..+|..+-.+.-|++-
T Consensus 25 ~~i~i~G~--~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 25 VVLWFTGL--SGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred EEEEEECC--CCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 56888886 79999999999999998888877666556543
No 314
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=41.40 E-value=37 Score=36.37 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=38.4
Q ss_pred hccCCCEEEeCCCCCCCch---hHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 008476 359 LLKGADGILVPGGFGNRGV---QGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (564)
Q Consensus 359 ~L~~~DGIllpGGfG~r~~---eg~i~~ir~a~e~~iPiLGICLGmQll~ia 407 (564)
....+|-|++.+|.+.... ......++.+..++.++-|||-|--+|+-+
T Consensus 73 ~~~~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~a 124 (328)
T COG4977 73 AAPPIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEA 124 (328)
T ss_pred ccCcceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHh
Confidence 3445888888787766432 447888999999999999999999998643
No 315
>PRK00208 thiG thiazole synthase; Reviewed
Probab=41.37 E-value=1.1e+02 Score=31.52 Aligned_cols=71 Identities=20% Similarity=0.250 Sum_probs=51.3
Q ss_pred EeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHH
Q 008476 303 VGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKIL 382 (564)
Q Consensus 303 VGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~eg~i~ 382 (564)
.|||. ++.-+.++|+.+|+++ +.|-+..++..+- .+.+|+.+..-.--++|+-.|-+..+..+.
T Consensus 17 tgky~----s~~~~~~ai~asg~~i-vTvalrR~~~~~~-----------~~~~~~~i~~~~~~~lpNTaG~~ta~eAv~ 80 (250)
T PRK00208 17 TGKYP----SPQVMQEAIEASGAEI-VTVALRRVNLGQG-----------GDNLLDLLPPLGVTLLPNTAGCRTAEEAVR 80 (250)
T ss_pred cCCCC----CHHHHHHHHHHhCCCe-EEEEEEeecCCCC-----------cchHHhhccccCCEECCCCCCCCCHHHHHH
Confidence 35887 6678899999999998 4567777765321 123566675545568999888888888888
Q ss_pred HHHHHHH
Q 008476 383 AAKYARE 389 (564)
Q Consensus 383 ~ir~a~e 389 (564)
.++.+||
T Consensus 81 ~a~lare 87 (250)
T PRK00208 81 TARLARE 87 (250)
T ss_pred HHHHHHH
Confidence 8887776
No 316
>PRK07933 thymidylate kinase; Validated
Probab=41.11 E-value=49 Score=32.80 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=32.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (564)
+||.+-| +.|-||-..+..|...|+++|++|...+.-
T Consensus 1 ~~IviEG--~dGsGKST~~~~L~~~L~~~g~~v~~~~~P 37 (213)
T PRK07933 1 MLIAIEG--VDGAGKRTLTEALRAALEARGRSVATLAFP 37 (213)
T ss_pred CEEEEEc--CCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4788887 578899999999999999999999999874
No 317
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=41.01 E-value=50 Score=34.35 Aligned_cols=35 Identities=46% Similarity=0.589 Sum_probs=28.9
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehh
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGICLG 400 (564)
+.+|.+++-||-|. ++.+++++...++|++||=+|
T Consensus 54 ~~~d~ivvlGGDGt-----lL~~~~~~~~~~~pilgin~G 88 (281)
T COG0061 54 EKADLIVVLGGDGT-----LLRAARLLARLDIPVLGINLG 88 (281)
T ss_pred cCceEEEEeCCcHH-----HHHHHHHhccCCCCEEEEeCC
Confidence 57888888887553 677888888888999999999
No 318
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=40.88 E-value=28 Score=34.62 Aligned_cols=30 Identities=30% Similarity=0.597 Sum_probs=22.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|.++|||| -||||+.++ +.|-++|++|.+.
T Consensus 9 k~~lItGa-s~gIG~aia-----~~l~~~G~~vv~~ 38 (251)
T PRK12481 9 KVAIITGC-NTGLGQGMA-----IGLAKAGADIVGV 38 (251)
T ss_pred CEEEEeCC-CchHHHHHH-----HHHHHCCCEEEEe
Confidence 78999998 477777554 5666789988754
No 319
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=40.67 E-value=58 Score=30.65 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcccCCCCCCCCcEEEEeeCcc--ccccCcchHHHHHHHhhhhcCC--CCEEEEEeeeee
Q 008476 119 DEIQDWIERVAMIPVDGKEGPVDVCVIELGGT--IGDIESMPFIEALGQFSYRVGP--GNFCLIHVSLVP 184 (564)
Q Consensus 119 ~~i~~~i~~~~~~p~~~~~~~~d~~i~e~ggt--vgdies~pf~ea~rq~~~~~~~--~~~~~~h~~~vp 184 (564)
.++.+++..+. ..+||+|+|.+|+- .......-|.+.+++|-..+.. .++-.+=+++.|
T Consensus 54 ~~~~~~l~~~~-------~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~~~~~~iiv~~~p~ 116 (191)
T cd01836 54 ADLLRQLAPLP-------ETRFDVAVISIGVNDVTHLTSIARWRKQLAELVDALRAKFPGARVVVTAVPP 116 (191)
T ss_pred HHHHHHHHhcc-------cCCCCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCC
Confidence 45556666632 46899999999984 1112223467777777666654 344444445433
No 320
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=40.49 E-value=1.2e+02 Score=34.06 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=22.3
Q ss_pred ceEEEEEeccCCCcchHHHHHHHHHHcCCccee
Q 008476 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRK 329 (564)
Q Consensus 297 ~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v 329 (564)
..||+|+| .+. +=.|+.+.|...|+.+.+
T Consensus 7 ~~kv~V~G-LG~---sG~a~a~~L~~~G~~v~v 35 (448)
T COG0771 7 GKKVLVLG-LGK---SGLAAARFLLKLGAEVTV 35 (448)
T ss_pred CCEEEEEe-ccc---ccHHHHHHHHHCCCeEEE
Confidence 46899997 332 337999999999988765
No 321
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=40.03 E-value=1.6e+02 Score=29.52 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=22.0
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGI 397 (564)
.++|||++.+...+ .....++.+.+.++|+..+
T Consensus 54 ~~vdgiii~~~~~~----~~~~~l~~l~~~~ipvV~~ 86 (288)
T cd01538 54 KGVDVLVIAPVDGE----ALASAVEKAADAGIPVIAY 86 (288)
T ss_pred cCCCEEEEecCChh----hHHHHHHHHHHCCCCEEEE
Confidence 58999998763222 1234566677788998755
No 322
>PRK07035 short chain dehydrogenase; Provisional
Probab=39.92 E-value=31 Score=33.96 Aligned_cols=30 Identities=40% Similarity=0.562 Sum_probs=23.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|-++||||- |||| +++.+.|.++|++|.++
T Consensus 9 k~vlItGas-~gIG-----~~l~~~l~~~G~~Vi~~ 38 (252)
T PRK07035 9 KIALVTGAS-RGIG-----EAIAKLLAQQGAHVIVS 38 (252)
T ss_pred CEEEEECCC-cHHH-----HHHHHHHHHCCCEEEEE
Confidence 679999986 6666 46667777889988766
No 323
>PRK09072 short chain dehydrogenase; Provisional
Probab=39.92 E-value=31 Score=34.26 Aligned_cols=33 Identities=33% Similarity=0.548 Sum_probs=24.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (564)
|.|+||||. |+||+.+ .+.|.++|++|.+.-.+
T Consensus 6 ~~vlItG~s-~~iG~~i-----a~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 6 KRVLLTGAS-GGIGQAL-----AEALAAAGARLLLVGRN 38 (263)
T ss_pred CEEEEECCC-chHHHHH-----HHHHHHCCCEEEEEECC
Confidence 679999987 7888654 56667889998877544
No 324
>PRK08727 hypothetical protein; Validated
Probab=39.71 E-value=21 Score=35.82 Aligned_cols=59 Identities=15% Similarity=0.269 Sum_probs=43.5
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccC
Q 008476 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDD 63 (564)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtm~p~~hgev~v~~d 63 (564)
.|+++|+ ||.||==.+.+++.-+...|++|..+-++-+.+.=+..++-++.=.+.|.||
T Consensus 43 ~l~l~G~--~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDD 101 (233)
T PRK08727 43 WLYLSGP--AGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDG 101 (233)
T ss_pred eEEEECC--CCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeC
Confidence 5899998 8999998899999999999999988766543332223344444456888886
No 325
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=39.32 E-value=47 Score=31.92 Aligned_cols=38 Identities=34% Similarity=0.441 Sum_probs=32.1
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 008476 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (564)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln 44 (564)
.|.++|+ ||-||=..+..|..+| .|.+|.++-.|.|..
T Consensus 1 iigi~G~--~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~ 38 (198)
T cd02023 1 IIGIAGG--SGSGKTTVAEEIIEQL--GNPKVVIISQDSYYK 38 (198)
T ss_pred CEEEECC--CCCCHHHHHHHHHHHh--CCCCeEEEEeccccc
Confidence 3788998 8999999999999988 567888898888764
No 326
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.20 E-value=35 Score=33.82 Aligned_cols=32 Identities=31% Similarity=0.459 Sum_probs=25.1
Q ss_pred EEEEEeCCc-cCCcchHHHHHHHHHHHHHCCCeeEEee
Q 008476 2 KYVLVTGGV-VSGLGKGVTASSIGVLLKACGLRVTCIK 38 (564)
Q Consensus 2 k~i~vtggv-~s~~gkg~~~~s~g~ll~~~g~~v~~~k 38 (564)
|-|+||||. .||||+. +.+.|..+|++|.+.=
T Consensus 6 k~vlItGas~~~giG~~-----la~~l~~~G~~vi~~~ 38 (256)
T PRK12748 6 KIALVTGASRLNGIGAA-----VCRRLAAKGIDIFFTY 38 (256)
T ss_pred cEEEEeCCCCCCCHHHH-----HHHHHHHcCCcEEEEc
Confidence 689999998 5889876 4566777899887763
No 327
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=39.18 E-value=1.3e+02 Score=29.44 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=21.0
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGI 397 (564)
.++||||+.+... ......++.+.+.++|+.-+
T Consensus 55 ~~vdgiii~~~~~----~~~~~~~~~l~~~~iPvv~~ 87 (272)
T cd06301 55 QGVDAIIVVPVDT----AATAPIVKAANAAGIPLVYV 87 (272)
T ss_pred cCCCEEEEecCch----hhhHHHHHHHHHCCCeEEEe
Confidence 4899999876321 11234566677788998653
No 328
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=39.18 E-value=1.4e+02 Score=29.28 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=21.1
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGI 397 (564)
.++||||+.+. +. +.....++.+.+.++|+.-+
T Consensus 56 ~~~dgiIi~~~--~~--~~~~~~i~~~~~~~ipvv~~ 88 (271)
T cd06321 56 AKVDLILLNAV--DS--KGIAPAVKRAQAAGIVVVAV 88 (271)
T ss_pred hCCCEEEEeCC--Ch--hHhHHHHHHHHHCCCeEEEe
Confidence 58999999652 21 12234567777778887655
No 329
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=38.83 E-value=1.1e+02 Score=33.89 Aligned_cols=66 Identities=18% Similarity=0.407 Sum_probs=38.5
Q ss_pred CCcEEEEe-eCccccccC-cchHHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhhhhhhhCCCcccEEEE
Q 008476 139 PVDVCVIE-LGGTIGDIE-SMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILAC 216 (564)
Q Consensus 139 ~~d~~i~e-~ggtvgdie-s~pf~ea~rq~~~~~~~~~~~~~h~~~vp~~~~~~e~ktkptq~svk~l~s~Gi~pd~lv~ 216 (564)
+.-.+|+| |-|.-|++. +--|++++|++..+.| +++|-=--.-=++..|+ + =..+..|+.||++++
T Consensus 218 ~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g---~llI~DEV~tG~GRtG~----~-----~~~~~~gv~PDi~~~ 285 (445)
T PRK09221 218 TIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHG---ILLIFDEVITGFGRLGA----A-----FAAERFGVTPDIITF 285 (445)
T ss_pred cEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcC---CEEEEeehhhCCCcCch----h-----hHHHhcCCCCCEEEe
Confidence 34568888 556667764 4559999999999865 55552111001111121 1 112346999998766
No 330
>PRK04296 thymidine kinase; Provisional
Probab=38.62 E-value=70 Score=30.96 Aligned_cols=38 Identities=18% Similarity=0.405 Sum_probs=27.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHH--HCCCeeEEeeecccccC
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLK--ACGLRVTCIKIDPYLNT 45 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~--~~g~~v~~~k~dpyln~ 45 (564)
+.+++||. .|+|-|++.++.+.. .+|.+|-++| |.+..
T Consensus 3 ~i~litG~----~GsGKTT~~l~~~~~~~~~g~~v~i~k--~~~d~ 42 (190)
T PRK04296 3 KLEFIYGA----MNSGKSTELLQRAYNYEERGMKVLVFK--PAIDD 42 (190)
T ss_pred EEEEEECC----CCCHHHHHHHHHHHHHHHcCCeEEEEe--ccccc
Confidence 46778876 388889988888855 4799998885 54433
No 331
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=38.60 E-value=19 Score=38.63 Aligned_cols=43 Identities=28% Similarity=0.493 Sum_probs=36.0
Q ss_pred ccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc--CCCCCCCc
Q 008476 10 VVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN--TDAGTMSP 52 (564)
Q Consensus 10 v~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln--~d~gtm~p 52 (564)
+|.|.|-|=|.+++||-||.++-.+-++=.||+-. .|++.-+|
T Consensus 216 ~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~ 260 (362)
T KOG1252|consen 216 FVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGP 260 (362)
T ss_pred EEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCC
Confidence 45678888888899999999999999999999854 46666666
No 332
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=38.58 E-value=38 Score=37.19 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=32.1
Q ss_pred EEEEEeCC----------ccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 008476 2 KYVLVTGG----------VVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (564)
Q Consensus 2 k~i~vtgg----------v~s~~gkg~~~~s~g~ll~~~g~~v~~~k 38 (564)
|-|+|||| .+|--.-|....+|.+.|..+|.+|+++-
T Consensus 189 k~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~ 235 (399)
T PRK05579 189 KRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVS 235 (399)
T ss_pred CEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeC
Confidence 57899999 67777778888899999999999999874
No 333
>PRK12829 short chain dehydrogenase; Provisional
Probab=38.21 E-value=37 Score=33.45 Aligned_cols=33 Identities=39% Similarity=0.622 Sum_probs=25.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (564)
|.++||||- ++|| +++.+.|.++|++|.++--|
T Consensus 12 ~~vlItGa~-g~iG-----~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 12 LRVLVTGGA-SGIG-----RAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred CEEEEeCCC-CcHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 679999995 5554 67788888999998876533
No 334
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=38.16 E-value=83 Score=29.74 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=23.6
Q ss_pred CcchHHHHHHHHHHHHHCCCeeEEee
Q 008476 13 GLGKGVTASSIGVLLKACGLRVTCIK 38 (564)
Q Consensus 13 ~~gkg~~~~s~g~ll~~~g~~v~~~k 38 (564)
+=||..|++=|..+|+..|..|...-
T Consensus 4 T~GKTTTt~ml~~iL~~~g~~~~~~~ 29 (188)
T PF08245_consen 4 TNGKTTTTRMLAHILSAAGKVVGTIG 29 (188)
T ss_dssp SSSHHHHHHHHHHHHHHTTEEEEEES
T ss_pred CCCHHHHHHHHHHHHHhcCCcccccc
Confidence 56999999999999999999888876
No 335
>PRK12828 short chain dehydrogenase; Provisional
Probab=38.09 E-value=40 Score=32.44 Aligned_cols=34 Identities=41% Similarity=0.572 Sum_probs=26.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp 41 (564)
|-|+||||- +++| .++.+.|.++|++|.++--||
T Consensus 8 k~vlItGat-g~iG-----~~la~~l~~~G~~v~~~~r~~ 41 (239)
T PRK12828 8 KVVAITGGF-GGLG-----RATAAWLAARGARVALIGRGA 41 (239)
T ss_pred CEEEEECCC-CcHh-----HHHHHHHHHCCCeEEEEeCCh
Confidence 679999986 6666 566677888899988776654
No 336
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=38.09 E-value=44 Score=29.14 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=30.3
Q ss_pred cCCcchHHHHHHHHHHHHHC-CCeeEEeeecccc
Q 008476 11 VSGLGKGVTASSIGVLLKAC-GLRVTCIKIDPYL 43 (564)
Q Consensus 11 ~s~~gkg~~~~s~g~ll~~~-g~~v~~~k~dpyl 43 (564)
=.|.||=.++..++..|.+. |++|-++-+||.-
T Consensus 8 kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~ 41 (106)
T cd03111 8 KGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF 41 (106)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC
Confidence 36899999999999999998 9999999999974
No 337
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=37.58 E-value=43 Score=30.11 Aligned_cols=92 Identities=17% Similarity=0.235 Sum_probs=49.1
Q ss_pred cccchHhhHHHHhhhhcCCCCCCeeEEccc-----chHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcc----
Q 008476 87 NITTGKIYQSVIDKERKGDYLGKTVQVVPH-----ITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESM---- 157 (564)
Q Consensus 87 ~~t~g~iy~~vi~ker~g~ylg~tvqviph-----~t~~i~~~i~~~~~~p~~~~~~~~d~~i~e~ggtvgdies~---- 157 (564)
+.+++.-|...+.++ .+..+.|... -+..+..++.+...- + ....||++++++|+ .|+-.-
T Consensus 12 ~~~~~~~~~~~l~~~-----~~~~~~~~n~~~~G~~~~~~~~~~~~~~~~-~--~~~~~d~vvi~~G~--ND~~~~~~~~ 81 (179)
T PF13472_consen 12 GAPNNGSYPDRLAER-----PGRGIEVYNLGVSGATSSDFLARLQRDVLR-F--KDPKPDLVVISFGT--NDVLNGDEND 81 (179)
T ss_dssp TTSSCTSHHHHHHHH-----HTCCEEEEEEE-TT-BHHHHHHHHHHHCHH-H--CGTTCSEEEEE--H--HHHCTCTTCH
T ss_pred CCCCCCCHHHHHHHh-----hCCCcEEEEEeecCccHhHHHHHHHHHHhh-h--ccCCCCEEEEEccc--cccccccccc
Confidence 333556778888875 3444444422 122233333332100 0 25689999999995 454442
Q ss_pred ----hHHHHHHHhhhhcCCCCEEEEEeeeeeeecCC
Q 008476 158 ----PFIEALGQFSYRVGPGNFCLIHVSLVPVLNVV 189 (564)
Q Consensus 158 ----pf~ea~rq~~~~~~~~~~~~~h~~~vp~~~~~ 189 (564)
-|.++++++...+.+.. -.+.+++.|+....
T Consensus 82 ~~~~~~~~~l~~~i~~~~~~~-~vi~~~~~~~~~~~ 116 (179)
T PF13472_consen 82 TSPEQYEQNLRRIIEQLRPHG-PVILVSPPPRGPDP 116 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-EEEEEE-SCSSSST
T ss_pred ccHHHHHHHHHHHHHhhcccC-cEEEecCCCccccc
Confidence 27788888888776666 44445555655443
No 338
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=37.56 E-value=41 Score=33.42 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=24.2
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 008476 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (564)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k 38 (564)
+++||||- ||||+.++- .+.+.+++.|++|.+.-
T Consensus 2 ~vlItGas-~GIG~~~a~-~la~~~~~~g~~V~~~~ 35 (256)
T TIGR01500 2 VCLVTGAS-RGFGRTIAQ-ELAKCLKSPGSVLVLSA 35 (256)
T ss_pred EEEEecCC-CchHHHHHH-HHHHhhccCCcEEEEEE
Confidence 68999996 999987654 33333446899987653
No 339
>PLN02422 dephospho-CoA kinase
Probab=37.46 E-value=41 Score=34.15 Aligned_cols=28 Identities=43% Similarity=0.751 Sum_probs=22.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v 34 (564)
||.|.||||.-| ||. +++.+|+..|+.|
T Consensus 1 M~~igltG~igs--GKs----tv~~~l~~~g~~~ 28 (232)
T PLN02422 1 MRVVGLTGGIAS--GKS----TVSNLFKSSGIPV 28 (232)
T ss_pred CeEEEEECCCCC--CHH----HHHHHHHHCCCeE
Confidence 789999999766 564 5667788889876
No 340
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=37.32 E-value=46 Score=35.94 Aligned_cols=36 Identities=33% Similarity=0.480 Sum_probs=31.5
Q ss_pred CccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 008476 9 GVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (564)
Q Consensus 9 gv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln 44 (564)
.-=-|.||=.+|+.++..|..+|+||-+|-+||--|
T Consensus 111 n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~~ 146 (387)
T TIGR03453 111 NFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQAS 146 (387)
T ss_pred ccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 344578999999999999999999999999999533
No 341
>PRK09620 hypothetical protein; Provisional
Probab=37.22 E-value=45 Score=33.67 Aligned_cols=36 Identities=31% Similarity=0.370 Sum_probs=31.6
Q ss_pred EEEEEeCC----------ccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGG----------VVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtgg----------v~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|-|+||+| .+|--=-|-+.+.|...|..+|++|+.+
T Consensus 4 k~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li 49 (229)
T PRK09620 4 KKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYL 49 (229)
T ss_pred CEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEE
Confidence 56889988 6777777999999999999999999986
No 342
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=37.15 E-value=34 Score=34.04 Aligned_cols=29 Identities=24% Similarity=0.614 Sum_probs=22.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (564)
|-++||||- ||||+.++- .|-++|++|.+
T Consensus 9 k~vlItGas-~gIG~~ia~-----~l~~~G~~v~~ 37 (260)
T PRK08416 9 KTLVISGGT-RGIGKAIVY-----EFAQSGVNIAF 37 (260)
T ss_pred CEEEEeCCC-chHHHHHHH-----HHHHCCCEEEE
Confidence 789999986 888887654 45568888754
No 343
>PRK11519 tyrosine kinase; Provisional
Probab=36.85 E-value=55 Score=38.58 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=36.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (564)
|.|.||+. .+|-||-.+++.++..|...|.||-+|-.|+.
T Consensus 527 kvi~vts~-~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr 566 (719)
T PRK11519 527 NVLMMTGV-SPSIGKTFVCANLAAVISQTNKRVLLIDCDMR 566 (719)
T ss_pred eEEEEECC-CCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 67788864 67999999999999999999999999999986
No 344
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=36.77 E-value=51 Score=33.97 Aligned_cols=34 Identities=41% Similarity=0.400 Sum_probs=27.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp 41 (564)
|.|+||||- |-+.+.|.+.|.++|++|...-.|+
T Consensus 6 k~vlVtG~~------G~IG~~l~~~L~~~G~~V~~~~r~~ 39 (325)
T PLN02989 6 KVVCVTGAS------GYIASWIVKLLLFRGYTINATVRDP 39 (325)
T ss_pred CEEEEECCc------hHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 789999984 6677888888888999998765555
No 345
>PRK08339 short chain dehydrogenase; Provisional
Probab=36.74 E-value=38 Score=34.06 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=23.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|.++||||- ||||+-+ .+.|-++|++|.+.
T Consensus 9 k~~lItGas-~gIG~ai-----a~~l~~~G~~V~~~ 38 (263)
T PRK08339 9 KLAFTTASS-KGIGFGV-----ARVLARAGADVILL 38 (263)
T ss_pred CEEEEeCCC-CcHHHHH-----HHHHHHCCCEEEEE
Confidence 789999986 7787754 45677789988764
No 346
>PRK05480 uridine/cytidine kinase; Provisional
Probab=36.62 E-value=62 Score=31.39 Aligned_cols=38 Identities=32% Similarity=0.325 Sum_probs=30.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyl 43 (564)
..|.++| .||-||=..+..|..+| .+..|.++-.|.|.
T Consensus 7 ~iI~I~G--~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~~ 44 (209)
T PRK05480 7 IIIGIAG--GSGSGKTTVASTIYEEL--GDESIAVIPQDSYY 44 (209)
T ss_pred EEEEEEC--CCCCCHHHHHHHHHHHh--CCCceEEEeCCccc
Confidence 4688888 68999999999999988 35577788888775
No 347
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=36.59 E-value=38 Score=30.78 Aligned_cols=70 Identities=19% Similarity=0.152 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCC
Q 008476 314 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIP 393 (564)
Q Consensus 314 ~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iP 393 (564)
..+.+.|+..|+++... .+..-+.+++. +.+.+.++++|-||.+||-|--..+-..++++.+....+|
T Consensus 21 ~~l~~~l~~~G~~~~~~-~~v~Dd~~~I~-----------~~l~~~~~~~dliittGG~g~g~~D~t~~~l~~~~~~~~~ 88 (135)
T smart00852 21 PALAELLTELGIEVTRY-VIVPDDKEAIK-----------EALREALERADLVITTGGTGPGPDDVTPEAVAEALGKELP 88 (135)
T ss_pred HHHHHHHHHCCCeEEEE-EEeCCCHHHHH-----------HHHHHHHhCCCEEEEcCCCCCCCCcCcHHHHHHHhCCcCC
Confidence 36777799999886432 11111111111 1122334679999999985532223334455444333444
Q ss_pred EE
Q 008476 394 YL 395 (564)
Q Consensus 394 iL 395 (564)
+.
T Consensus 89 ~~ 90 (135)
T smart00852 89 GF 90 (135)
T ss_pred Ch
Confidence 33
No 348
>PRK06197 short chain dehydrogenase; Provisional
Probab=36.55 E-value=35 Score=35.00 Aligned_cols=30 Identities=33% Similarity=0.444 Sum_probs=22.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|-|+||||. +|||+.++ +.|..+|++|.+.
T Consensus 17 k~vlItGas-~gIG~~~a-----~~l~~~G~~vi~~ 46 (306)
T PRK06197 17 RVAVVTGAN-TGLGYETA-----AALAAKGAHVVLA 46 (306)
T ss_pred CEEEEcCCC-CcHHHHHH-----HHHHHCCCEEEEE
Confidence 679999995 78887654 4466678877654
No 349
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=36.47 E-value=98 Score=29.73 Aligned_cols=77 Identities=17% Similarity=0.104 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhh-hHHHHhccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCC
Q 008476 314 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAY-KAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRI 392 (564)
Q Consensus 314 ~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y-~~~~~~L~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~i 392 (564)
..+.+.|+..|+.+.. . .+-+++. +.- +.+.+.++.+|-||.+||-|-...+-..++++.+. ++
T Consensus 22 ~~l~~~L~~~G~~v~~---~-~~v~Dd~---------~~I~~~l~~~~~~~dlVIttGG~G~t~~D~t~ea~~~~~--~~ 86 (170)
T cd00885 22 AFLAKELAELGIEVYR---V-TVVGDDE---------DRIAEALRRASERADLVITTGGLGPTHDDLTREAVAKAF--GR 86 (170)
T ss_pred HHHHHHHHHCCCEEEE---E-EEeCCCH---------HHHHHHHHHHHhCCCEEEECCCCCCCCCChHHHHHHHHh--CC
Confidence 3567778888987632 1 1212211 111 12334456899999999866655455566776665 45
Q ss_pred CEEEEehhHHHHH
Q 008476 393 PYLGICLGMQVAV 405 (564)
Q Consensus 393 PiLGICLGmQll~ 405 (564)
|+.+.=--++.|-
T Consensus 87 ~l~~~~e~~~~i~ 99 (170)
T cd00885 87 PLVLDEEALERIE 99 (170)
T ss_pred CcccCHHHHHHHH
Confidence 5555544545553
No 350
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.46 E-value=39 Score=32.75 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=21.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (564)
|-|+||||- +++| +.+.+.|.++|++|..
T Consensus 6 ~~vlItGa~-g~iG-----~~~a~~l~~~G~~V~~ 34 (238)
T PRK05786 6 KKVAIIGVS-EGLG-----YAVAYFALKEGAQVCI 34 (238)
T ss_pred cEEEEECCC-chHH-----HHHHHHHHHCCCEEEE
Confidence 689999995 6666 4555777788988766
No 351
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=36.42 E-value=61 Score=30.77 Aligned_cols=35 Identities=31% Similarity=0.426 Sum_probs=28.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k 38 (564)
+.|.++|. ||-||...+..|...|+..|..+..+-
T Consensus 19 ~~i~i~G~--~GsGKstla~~l~~~l~~~~~~~~~l~ 53 (184)
T TIGR00455 19 VVIWLTGL--SGSGKSTIANALEKKLESKGYRVYVLD 53 (184)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 56788884 689999999999999998887665443
No 352
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=36.38 E-value=39 Score=33.65 Aligned_cols=30 Identities=47% Similarity=0.674 Sum_probs=22.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|.++||||- +|||+.+ .+.|..+|++|.+.
T Consensus 6 k~vlItGas-~gIG~~i-----a~~l~~~G~~V~~~ 35 (262)
T TIGR03325 6 EVVLVTGGA-SGLGRAI-----VDRFVAEGARVAVL 35 (262)
T ss_pred cEEEEECCC-ChHHHHH-----HHHHHHCCCEEEEE
Confidence 789999984 7888654 46667789988764
No 353
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=36.36 E-value=68 Score=25.70 Aligned_cols=32 Identities=34% Similarity=0.524 Sum_probs=23.7
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 008476 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (564)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~ 39 (564)
|+++|+ +|-||...+..+...| .|.++..+.-
T Consensus 2 i~i~G~--~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGG--SGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred EEEECC--CCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 678886 5667988888887777 5777777653
No 354
>PRK08703 short chain dehydrogenase; Provisional
Probab=36.25 E-value=41 Score=32.84 Aligned_cols=30 Identities=40% Similarity=0.568 Sum_probs=22.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|.++|||| -++||+.+ .+.|.++|++|.+.
T Consensus 7 k~vlItG~-sggiG~~l-----a~~l~~~g~~V~~~ 36 (239)
T PRK08703 7 KTILVTGA-SQGLGEQV-----AKAYAAAGATVILV 36 (239)
T ss_pred CEEEEECC-CCcHHHHH-----HHHHHHcCCEEEEE
Confidence 78999987 68888765 45666789988763
No 355
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=36.22 E-value=1.6e+02 Score=30.71 Aligned_cols=73 Identities=19% Similarity=0.223 Sum_probs=51.9
Q ss_pred EeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHH
Q 008476 303 VGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKIL 382 (564)
Q Consensus 303 VGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~eg~i~ 382 (564)
.|||. ++.-+.++|+.+|+++ ++|-+.-++.+.... -+..|+.+..-.--++|+-.|-+..+..+.
T Consensus 23 Tgky~----s~~~~~~ai~aSg~ev-vTvalRR~~~~~~~~---------~~~~l~~i~~~~~~~LPNTaGc~tA~EAv~ 88 (267)
T CHL00162 23 TGKYK----SLKDAIQSIEASGCEI-VTVAIRRLNNNLLND---------NSNLLNGLDWNKLWLLPNTAGCQTAEEAIR 88 (267)
T ss_pred cCCCC----CHHHHHHHHHHhCCcE-EEEEEEEeccCcCCC---------cchHHHhhchhccEECCcCcCCCCHHHHHH
Confidence 35887 6778899999999998 456777776421111 013566676555578999888888888888
Q ss_pred HHHHHHH
Q 008476 383 AAKYARE 389 (564)
Q Consensus 383 ~ir~a~e 389 (564)
.++.+||
T Consensus 89 ~A~laRe 95 (267)
T CHL00162 89 MAFLGRE 95 (267)
T ss_pred HHHHHHH
Confidence 8888887
No 356
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=36.03 E-value=49 Score=26.68 Aligned_cols=38 Identities=26% Similarity=0.498 Sum_probs=30.1
Q ss_pred cchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccc
Q 008476 14 LGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFE 54 (564)
Q Consensus 14 ~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtm~p~~ 54 (564)
+|=|++.-+.+..|+.+|++|+++--.+++- |.+..+.
T Consensus 2 iGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G---G~~~~~~ 39 (68)
T PF13450_consen 2 IGAGISGLAAAYYLAKAGYRVTVFEKNDRLG---GRARSFR 39 (68)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSSSSS---GGGCEEE
T ss_pred EeeCHHHHHHHHHHHHCCCcEEEEecCcccC---cceeEEE
Confidence 5778999999999999999999999888863 4444443
No 357
>PRK05876 short chain dehydrogenase; Provisional
Probab=35.76 E-value=40 Score=34.20 Aligned_cols=30 Identities=33% Similarity=0.514 Sum_probs=23.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|-++||||- ||||+.+ .+.|.++|++|.+.
T Consensus 7 k~vlVTGas-~gIG~al-----a~~La~~G~~Vv~~ 36 (275)
T PRK05876 7 RGAVITGGA-SGIGLAT-----GTEFARRGARVVLG 36 (275)
T ss_pred CEEEEeCCC-chHHHHH-----HHHHHHCCCEEEEE
Confidence 679999995 8998764 55677789988764
No 358
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=35.75 E-value=44 Score=34.35 Aligned_cols=36 Identities=33% Similarity=0.564 Sum_probs=27.0
Q ss_pred EEEeCCccCCcchHHHHHH-HHHHHHHCCCeeEEeeecc
Q 008476 4 VLVTGGVVSGLGKGVTASS-IGVLLKACGLRVTCIKIDP 41 (564)
Q Consensus 4 i~vtggv~s~~gkg~~~~s-~g~ll~~~g~~v~~~k~dp 41 (564)
|-|||= -|.||=.+||. +-++++..||+|.++--||
T Consensus 3 IaI~GK--GG~GKTtiaalll~~l~~~~~~~VLvVDaDp 39 (255)
T COG3640 3 IAITGK--GGVGKTTIAALLLKRLLSKGGYNVLVVDADP 39 (255)
T ss_pred EEEecC--CCccHHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 445552 36799999999 5555555569999999999
No 359
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=35.70 E-value=2.1e+02 Score=27.84 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=20.2
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGI 397 (564)
.++|||++.+...+ ...++.+.+.++|+..+
T Consensus 54 ~~vdgiii~~~~~~------~~~~~~~~~~~ipvv~~ 84 (268)
T cd01575 54 RRPAGLILTGLEHT------ERTRQLLRAAGIPVVEI 84 (268)
T ss_pred cCCCEEEEeCCCCC------HHHHHHHHhcCCCEEEE
Confidence 57999999774322 12344555678898765
No 360
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=35.60 E-value=58 Score=33.55 Aligned_cols=162 Identities=20% Similarity=0.232 Sum_probs=96.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCC-ccccCCCCccccccCC
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDG-GEVDLDLGNYERFMDI 80 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtm~p~~hgev~v~~dg-~e~dldlg~yerf~~~ 80 (564)
+.|.||.| ..|.||-.+|+.|+..|..+|+||-++-.|=| .|..|-..=+ ++. +-+++--|.
T Consensus 58 ~~I~V~S~-kgGvGKStva~nLA~alA~~G~rVlliDaD~~--------gps~~~~l~~-~~~~g~~~~~~g~------- 120 (265)
T COG0489 58 NVIAVTSG-KGGVGKSTVAVNLAAALAQLGKRVLLLDADLR--------GPSIPRMLGL-ENLPGLTELLAGE------- 120 (265)
T ss_pred eEEEEEeC-CCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCC--------CCchHHHhCC-CCCCCcccccCCC-------
Confidence 45667666 47999999999999999999999999877754 3334422111 111 223333333
Q ss_pred CCCCCCcccchHhhHHHHhhh-hcCCCCCCeeEEcccc------hHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccc
Q 008476 81 KLTRDNNITTGKIYQSVIDKE-RKGDYLGKTVQVVPHI------TDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGD 153 (564)
Q Consensus 81 ~~~~~~~~t~g~iy~~vi~ke-r~g~ylg~tvqviph~------t~~i~~~i~~~~~~p~~~~~~~~d~~i~e~ggtvgd 153 (564)
.++.++..- ..+-..+-.+. .|++ +..+++.|..+. ...+|++||+..==.||
T Consensus 121 ------------~~~~~~~~~~~~~lsi~~~~~-~p~~~r~~l~s~~~~qll~~~~-------~~~~D~vIID~PP~~g~ 180 (265)
T COG0489 121 ------------ALEPVIQHDGIKVLSILPLGP-VPVIPRGLLGSKAMLQLLEDVL-------WGEYDYVIIDTPPGTGD 180 (265)
T ss_pred ------------ccccceecCccceEEEEecCC-CCCCChHhhhhHHHHHHHHHHh-------ccCCCEEEEeCCCCchH
Confidence 233333332 12222222222 4444 467788888875 44699999999877788
Q ss_pred cCcchHHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhhhhhhhCCCcccEEEEe
Q 008476 154 IESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACR 217 (564)
Q Consensus 154 ies~pf~ea~rq~~~~~~~~~~~~~h~~~vp~~~~~~e~ktkptq~svk~l~s~Gi~pd~lv~R 217 (564)
.. ++=++.-.. .+++ ..+.++....=.+.++..++..++..-++|.-
T Consensus 181 ~d-------~~i~~~~~~--g~vi--------Vt~p~~~~~~~v~ka~~~~~~~~~~vlGvv~N 227 (265)
T COG0489 181 AD-------ATVLQRIPD--GVVI--------VTTPGKTALEDVKKAIDMLEKAGIPVLGVVEN 227 (265)
T ss_pred HH-------HHHHhccCC--eEEE--------EeCCccchHHHHHHHHHHHHhcCCceEEEEec
Confidence 32 222222211 1211 22346666666777888999999998888764
No 361
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=35.60 E-value=40 Score=33.79 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=23.0
Q ss_pred EEEEEeCC-ccCCcchHHHHHHHHHHHHHCCCeeEE
Q 008476 2 KYVLVTGG-VVSGLGKGVTASSIGVLLKACGLRVTC 36 (564)
Q Consensus 2 k~i~vtgg-v~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (564)
|.++|||| --+|||+.++ +.|-++|++|.+
T Consensus 7 k~~lITGa~~~~GIG~a~a-----~~l~~~G~~v~~ 37 (261)
T PRK08690 7 KKILITGMISERSIAYGIA-----KACREQGAELAF 37 (261)
T ss_pred cEEEEECCCCCCcHHHHHH-----HHHHHCCCEEEE
Confidence 68999998 4689998765 446678998854
No 362
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=35.56 E-value=43 Score=36.59 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=23.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v 34 (564)
|+.|.||||.-| || |+++++|+..|+.|
T Consensus 1 m~~IgltG~igs--GK----Stv~~~L~~~G~~v 28 (395)
T PRK03333 1 MLRIGLTGGIGA--GK----STVAARLAELGAVV 28 (395)
T ss_pred CeEEEEECCCCC--CH----HHHHHHHHHCCCeE
Confidence 788999999866 45 67888999888865
No 363
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=35.45 E-value=43 Score=33.96 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=24.3
Q ss_pred EEEEEeCCcc-CCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVV-SGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~-s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|.++||||-= ||||+.++ +.|-+.|++|.+.
T Consensus 8 k~~lVTGas~~~GIG~aiA-----~~la~~Ga~V~~~ 39 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIA-----KQLAAQGAELAFT 39 (271)
T ss_pred CEEEEeCCCCCCcHHHHHH-----HHHHhCCCEEEEe
Confidence 7899999986 69998765 4566789988653
No 364
>PRK05717 oxidoreductase; Validated
Probab=35.44 E-value=39 Score=33.39 Aligned_cols=30 Identities=37% Similarity=0.577 Sum_probs=22.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|.++||||- ++||+.+ .+.|-++|++|.++
T Consensus 11 k~vlItG~s-g~IG~~~-----a~~l~~~g~~v~~~ 40 (255)
T PRK05717 11 RVALVTGAA-RGIGLGI-----AAWLIAEGWQVVLA 40 (255)
T ss_pred CEEEEeCCc-chHHHHH-----HHHHHHcCCEEEEE
Confidence 789999995 6666654 46666789888776
No 365
>PRK13973 thymidylate kinase; Provisional
Probab=35.16 E-value=74 Score=31.29 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=30.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k 38 (564)
+||.+-| +.|-||...+..|-.-|+++|++|....
T Consensus 4 ~~IviEG--~dGsGKtTq~~~l~~~l~~~g~~~~~~~ 38 (213)
T PRK13973 4 RFITFEG--GEGAGKSTQIRLLAERLRAAGYDVLVTR 38 (213)
T ss_pred eEEEEEc--CCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 7999988 4799999999999999999999886554
No 366
>PRK05993 short chain dehydrogenase; Provisional
Probab=35.01 E-value=41 Score=33.99 Aligned_cols=33 Identities=30% Similarity=0.391 Sum_probs=25.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (564)
|-++|||| -+|||+.+ .+.|.++|++|.+.--+
T Consensus 5 k~vlItGa-sggiG~~l-----a~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 5 RSILITGC-SSGIGAYC-----ARALQSDGWRVFATCRK 37 (277)
T ss_pred CEEEEeCC-CcHHHHHH-----HHHHHHCCCEEEEEECC
Confidence 68999998 47888654 56677899998876433
No 367
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=34.96 E-value=56 Score=37.44 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=32.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHC--CCeeEEeeeccc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKAC--GLRVTCIKIDPY 42 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~--g~~v~~~k~dpy 42 (564)
+.|.++|. +|.||=.+++.|+..+..+ |.+|.++-.|+|
T Consensus 351 ~vIaLVGP--tGvGKTTtaakLAa~la~~~~gkkVaLIdtDty 391 (559)
T PRK12727 351 GVIALVGP--TGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQ 391 (559)
T ss_pred CEEEEECC--CCCCHHHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 35667775 7999999999999887765 579999999988
No 368
>PRK05866 short chain dehydrogenase; Provisional
Probab=34.79 E-value=38 Score=34.81 Aligned_cols=30 Identities=30% Similarity=0.523 Sum_probs=22.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|.|+|||| -||||+.++ +.|.++|++|.+.
T Consensus 41 k~vlItGa-sggIG~~la-----~~La~~G~~Vi~~ 70 (293)
T PRK05866 41 KRILLTGA-SSGIGEAAA-----EQFARRGATVVAV 70 (293)
T ss_pred CEEEEeCC-CcHHHHHHH-----HHHHHCCCEEEEE
Confidence 67999998 477777554 4566789887664
No 369
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=34.64 E-value=72 Score=35.09 Aligned_cols=62 Identities=29% Similarity=0.462 Sum_probs=42.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCC--CCCccccceEEEccCCccccCCCCc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAG--TMSPFEHGEVFVLDDGGEVDLDLGN 73 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~g--tm~p~~hgev~v~~dg~e~dldlg~ 73 (564)
|.|-||| +-||-.|++=|+.+|+..|+++..-. |+-.. .+.+..-.+++|.+=+ |-+||+-|
T Consensus 115 ~vI~VTG----T~GKTTTt~ll~~iL~~~g~~~~~~g-----nig~~~~~~~~~~~~~~~V~E~~-~~~ld~t~ 178 (460)
T PRK01390 115 PFIAITG----TNGKSTTTALIAHILREAGRDVQMGG-----NIGTAVLTLEPPPAGRVYVLELS-SYQIDLAP 178 (460)
T ss_pred CEEEEeC----CCcHHHHHHHHHHHHHhcCCCeEEcC-----ccchhhhhcccCCCCCEEEEEcC-cccccccc
Confidence 5688888 67999999999999999999875432 32211 1112223489999877 44566544
No 370
>PRK00698 tmk thymidylate kinase; Validated
Probab=34.61 E-value=69 Score=30.52 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=29.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
++|+|.| .+|-||...+..|...|...|+.|...
T Consensus 4 ~~I~ieG--~~gsGKsT~~~~L~~~l~~~~~~~~~~ 37 (205)
T PRK00698 4 MFITIEG--IDGAGKSTQIELLKELLEQQGRDVVFT 37 (205)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHcCCceeEe
Confidence 7999998 478899999999999999888766544
No 371
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.58 E-value=1.9e+02 Score=28.62 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=19.7
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEE
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYL 395 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiL 395 (564)
.++|||++.+.. . +.....++.+.+.++|+.
T Consensus 54 ~~~Dgiii~~~~--~--~~~~~~i~~~~~~~iPvV 84 (282)
T cd06318 54 RGVNVLIINPVD--P--EGLVPAVAAAKAAGVPVV 84 (282)
T ss_pred cCCCEEEEecCC--c--cchHHHHHHHHHCCCCEE
Confidence 589999997632 1 112345667777788864
No 372
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=34.56 E-value=40 Score=36.68 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=30.2
Q ss_pred CCcchHHHHHHHHHHHHHCCCeeEEeee-cccccC
Q 008476 12 SGLGKGVTASSIGVLLKACGLRVTCIKI-DPYLNT 45 (564)
Q Consensus 12 s~~gkg~~~~s~g~ll~~~g~~v~~~k~-dpyln~ 45 (564)
-|.||=.+|+.++..|..+|+||-+|-+ ||--|.
T Consensus 116 GGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nl 150 (388)
T PRK13705 116 GGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTA 150 (388)
T ss_pred CCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCch
Confidence 3569999999999999999999999995 997664
No 373
>PRK00889 adenylylsulfate kinase; Provisional
Probab=34.53 E-value=74 Score=29.86 Aligned_cols=38 Identities=32% Similarity=0.426 Sum_probs=31.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp 41 (564)
+.|.++| .+|-||=..|..|...|+..|.+|..+--|.
T Consensus 5 ~~i~~~G--~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 5 VTVWFTG--LSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 4566776 6899999999999999999998888775553
No 374
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=34.53 E-value=48 Score=33.28 Aligned_cols=39 Identities=31% Similarity=0.439 Sum_probs=28.5
Q ss_pred cCCCEEEeCCCCCCC-ch-hHHHHHHHHHHHcCCCEEEEeh
Q 008476 361 KGADGILVPGGFGNR-GV-QGKILAAKYAREHRIPYLGICL 399 (564)
Q Consensus 361 ~~~DGIllpGGfG~r-~~-eg~i~~ir~a~e~~iPiLGICL 399 (564)
.+.|.|.++=|||.- |. -|..-+--.|...++|++|||-
T Consensus 57 ~dld~iav~~GPGSFTGlRIG~~~AkgLA~~l~iplvgvss 97 (220)
T COG1214 57 QDLDAIAVAKGPGSFTGLRIGVAFAKGLALALNIPLVGVSS 97 (220)
T ss_pred HHCCEEEEccCCCcccchhhHHHHHHHHHHHcCCCEEEeCH
Confidence 467999999999983 44 2333333356778999999994
No 375
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=34.39 E-value=1.9e+02 Score=28.32 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=21.1
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGI 397 (564)
.++|||++.++ +.. .....++++.+.++|+..+
T Consensus 54 ~~vdgii~~~~--~~~--~~~~~i~~~~~~~ipvV~~ 86 (273)
T cd06305 54 QKVDAIIIQHG--RAE--VLKPWVKRALDAGIPVVAF 86 (273)
T ss_pred cCCCEEEEecC--Chh--hhHHHHHHHHHcCCCEEEe
Confidence 48999999763 211 1234466777788987654
No 376
>PRK07024 short chain dehydrogenase; Provisional
Probab=34.18 E-value=42 Score=33.27 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=23.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~ 39 (564)
+|-++|||| -||||+.++ ..|..+|++|.+.-.
T Consensus 2 ~~~vlItGa-s~gIG~~la-----~~l~~~G~~v~~~~r 34 (257)
T PRK07024 2 PLKVFITGA-SSGIGQALA-----REYARQGATLGLVAR 34 (257)
T ss_pred CCEEEEEcC-CcHHHHHHH-----HHHHHCCCEEEEEeC
Confidence 367999998 577887655 446678998877543
No 377
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=34.05 E-value=1.7e+02 Score=30.02 Aligned_cols=72 Identities=21% Similarity=0.286 Sum_probs=51.9
Q ss_pred EeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHH
Q 008476 303 VGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKIL 382 (564)
Q Consensus 303 VGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~eg~i~ 382 (564)
.|||. +..-+.++++.+|.++ ++|-+.-++...-.. +.+|+.+..-+--++|+-.|-+..+..+.
T Consensus 23 Tgky~----s~~~~~~av~asg~~i-vTvAlRR~~~~~~~~----------~~~l~~l~~~~~~~LPNTaGc~taeEAv~ 87 (262)
T COG2022 23 TGKYP----SPAVLAEAVRASGSEI-VTVALRRVNATRPGG----------DGILDLLIPLGVTLLPNTAGCRTAEEAVR 87 (262)
T ss_pred cCCCC----CHHHHHHHHHhcCCce-EEEEEEeecccCCCc----------chHHHHhhhcCcEeCCCccccCCHHHHHH
Confidence 35777 5678889999999998 446677765421111 23566666666669999889888888888
Q ss_pred HHHHHHH
Q 008476 383 AAKYARE 389 (564)
Q Consensus 383 ~ir~a~e 389 (564)
.++-|||
T Consensus 88 tArlARE 94 (262)
T COG2022 88 TARLARE 94 (262)
T ss_pred HHHHHHH
Confidence 8888887
No 378
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=33.97 E-value=40 Score=33.50 Aligned_cols=29 Identities=38% Similarity=0.383 Sum_probs=22.0
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
-++||||- +|||+.++ +.|..+|++|.+.
T Consensus 2 ~vlItGas-~gIG~aia-----~~l~~~G~~V~~~ 30 (259)
T PRK08340 2 NVLVTASS-RGIGFNVA-----RELLKKGARVVIS 30 (259)
T ss_pred eEEEEcCC-cHHHHHHH-----HHHHHcCCEEEEE
Confidence 37899985 78887654 6677889988765
No 379
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=33.90 E-value=2e+02 Score=27.48 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=20.7
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGI 397 (564)
.++||||+.+.... . .. .++.+.++++|++.+
T Consensus 54 ~~~d~ii~~~~~~~-~---~~-~~~~l~~~~ip~v~~ 85 (264)
T cd01537 54 RGVDGIIIAPSDLT-A---PT-IVKLARKAGIPVVLV 85 (264)
T ss_pred cCCCEEEEecCCCc-c---hh-HHHHhhhcCCCEEEe
Confidence 47999999764321 1 11 466667778888764
No 380
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=33.77 E-value=34 Score=36.02 Aligned_cols=11 Identities=36% Similarity=0.673 Sum_probs=6.5
Q ss_pred EEcccCCCcCC
Q 008476 521 GVQFHPEYKSR 531 (564)
Q Consensus 521 GvQFHPE~ss~ 531 (564)
.=.+||.+...
T Consensus 281 ~R~~HP~Y~~~ 291 (302)
T PF08497_consen 281 TRRPHPSYKKK 291 (302)
T ss_pred CCCCCcccCCC
Confidence 45667766544
No 381
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=33.67 E-value=47 Score=32.86 Aligned_cols=29 Identities=34% Similarity=0.619 Sum_probs=22.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (564)
|.++||||- ||||+. +.+.|-++|++|.+
T Consensus 8 k~~lItGas-~gIG~~-----~a~~l~~~G~~v~~ 36 (255)
T PRK06463 8 KVALITGGT-RGIGRA-----IAEAFLREGAKVAV 36 (255)
T ss_pred CEEEEeCCC-ChHHHH-----HHHHHHHCCCEEEE
Confidence 789999995 888865 45667778998865
No 382
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=33.61 E-value=66 Score=37.94 Aligned_cols=40 Identities=20% Similarity=0.362 Sum_probs=36.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpy 42 (564)
|.|.||+ ..+|-||-.+|+.++..|...|.||-+|-.||.
T Consensus 532 kvI~vtS-~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r 571 (726)
T PRK09841 532 NILMITG-ATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 571 (726)
T ss_pred eEEEEec-CCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 6677776 578999999999999999999999999999986
No 383
>PF12846 AAA_10: AAA-like domain
Probab=33.49 E-value=65 Score=32.26 Aligned_cols=35 Identities=31% Similarity=0.391 Sum_probs=29.5
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 008476 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (564)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp 41 (564)
-++|+|. +|-||=.++.++-.-+-.+|..|-++ ||
T Consensus 3 h~~i~G~--tGsGKT~~~~~l~~~~~~~g~~~~i~--D~ 37 (304)
T PF12846_consen 3 HTLILGK--TGSGKTTLLKNLLEQLIRRGPRVVIF--DP 37 (304)
T ss_pred eEEEECC--CCCcHHHHHHHHHHHHHHcCCCEEEE--cC
Confidence 4678885 79999999999999999999888777 66
No 384
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=33.40 E-value=54 Score=35.38 Aligned_cols=32 Identities=31% Similarity=0.493 Sum_probs=27.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|.|=|||- =|||-|++=|..+|++.|+||-..
T Consensus 19 ~vI~VtGT----NGKgSt~~~l~~iL~~~g~~vg~~ 50 (397)
T TIGR01499 19 PVIHVAGT----NGKGSTCAFLESILRAAGYKVGLF 50 (397)
T ss_pred CEEEEeCC----CChHHHHHHHHHHHHHcCCCeeEE
Confidence 56777874 599999999999999999999665
No 385
>PRK14528 adenylate kinase; Provisional
Probab=33.20 E-value=46 Score=32.09 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=21.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHH
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLL 27 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll 27 (564)
||-|+|+|+ +|-||+..|.-|+.-+
T Consensus 1 ~~~i~i~G~--pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 1 MKNIIFMGP--PGAGKGTQAKILCERL 25 (186)
T ss_pred CcEEEEECC--CCCCHHHHHHHHHHHh
Confidence 688999998 9999999988776543
No 386
>PRK07831 short chain dehydrogenase; Provisional
Probab=33.03 E-value=52 Score=32.68 Aligned_cols=31 Identities=32% Similarity=0.346 Sum_probs=23.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|-++||||-=||||+.++ +.|.++|++|.+.
T Consensus 18 k~vlItG~sg~gIG~~ia-----~~l~~~G~~V~~~ 48 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATA-----RRALEEGARVVIS 48 (262)
T ss_pred CEEEEECCCcccHHHHHH-----HHHHHcCCEEEEE
Confidence 679999997568886554 6677889987663
No 387
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=32.89 E-value=41 Score=32.65 Aligned_cols=70 Identities=21% Similarity=0.232 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccC-CCEEEeCCCCCCCchhHHHHHHHHHHHcCC
Q 008476 314 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKG-ADGILVPGGFGNRGVQGKILAAKYAREHRI 392 (564)
Q Consensus 314 ~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~-~DGIllpGGfG~r~~eg~i~~ir~a~e~~i 392 (564)
.-+.+.|+.+|.++.. ..+ ++ ++.+. -.....+...+ +|.||..||-|-..-.-..++++...++.+
T Consensus 30 ~~l~~~L~~ag~~~~~-~~i--V~-D~~~~--------I~~~l~~~~~~~~DvvlttGGTG~t~RDvTpEA~~~~~dKei 97 (169)
T COG0521 30 PLLVELLEEAGHNVAA-YTI--VP-DDKEQ--------IRATLIALIDEDVDVVLTTGGTGITPRDVTPEATRPLFDKEI 97 (169)
T ss_pred hHHHHHHHHcCCccce-EEE--eC-CCHHH--------HHHHHHHHhcCCCCEEEEcCCccCCCCcCCHHHHHHHHhccC
Confidence 4678889999998822 111 22 21110 00111222233 899999997655433345677777778888
Q ss_pred CEE
Q 008476 393 PYL 395 (564)
Q Consensus 393 PiL 395 (564)
|=|
T Consensus 98 pGF 100 (169)
T COG0521 98 PGF 100 (169)
T ss_pred CcH
Confidence 843
No 388
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.84 E-value=1.9e+02 Score=28.98 Aligned_cols=33 Identities=18% Similarity=0.029 Sum_probs=21.0
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGI 397 (564)
.++|||++.+. +. ......++.+++.++|+.-+
T Consensus 55 ~~~dgiii~~~--~~--~~~~~~i~~~~~~~iPvV~~ 87 (294)
T cd06316 55 QKPDIIISIPV--DP--VSTAAAYKKVAEAGIKLVFM 87 (294)
T ss_pred hCCCEEEEcCC--Cc--hhhhHHHHHHHHcCCcEEEe
Confidence 58999999652 11 11234566777889997643
No 389
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=32.69 E-value=2.2e+02 Score=27.62 Aligned_cols=52 Identities=21% Similarity=0.276 Sum_probs=31.4
Q ss_pred cchHHHH--HHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccc
Q 008476 14 LGKGVTA--SSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEV 67 (564)
Q Consensus 14 ~gkg~~~--~s~g~ll~~~g~~v~~~k~dpyln~d~gtm~p~~hgev~v~~dg~e~ 67 (564)
+|-|-|+ ..+-..+. ++.+|.+++-|++-++|+-.+.... -+|..+.+|.-+
T Consensus 31 ~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~~~~D~~~~~~~~-~~~~~l~~gcic 84 (207)
T TIGR00073 31 PGSGKTTLIEKLIDNLK-DEVKIAVIEGDVITKFDAERLRKYG-APAIQINTGKEC 84 (207)
T ss_pred CCCCHHHHHHHHHHHHh-cCCeEEEEECCCCCcccHHHHHHcC-CcEEEEcCCCcc
Confidence 4444444 44443332 4689999999998888876665322 155666555443
No 390
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=32.62 E-value=51 Score=27.57 Aligned_cols=45 Identities=24% Similarity=0.233 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEE-EccCCccccCCC
Q 008476 16 KGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVF-VLDDGGEVDLDL 71 (564)
Q Consensus 16 kg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtm~p~~hgev~-v~~dg~e~dldl 71 (564)
..+..+.+=..|+..||+|.-+|+|- |.+ =||. ...||...++.+
T Consensus 27 ~~~~~~~~~~~l~~~G~~v~~ve~~~----~g~-------yev~~~~~dG~~~ev~v 72 (83)
T PF13670_consen 27 DWLSIEQAVAKLEAQGYQVREVEFDD----DGC-------YEVEARDKDGKKVEVYV 72 (83)
T ss_pred ccCCHHHHHHHHHhcCCceEEEEEcC----CCE-------EEEEEEECCCCEEEEEE
Confidence 34456777788999999999999941 111 3888 778898887754
No 391
>PLN02913 dihydrofolate synthetase
Probab=32.41 E-value=31 Score=39.02 Aligned_cols=32 Identities=44% Similarity=0.610 Sum_probs=26.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|.|=|||= =|||-|++-|..+|++.||||-.-
T Consensus 76 ~vIhVaGT----NGKGSt~a~l~~iL~~aG~~vG~f 107 (510)
T PLN02913 76 KAVHVAGT----KGKGSTAAFLSNILRAQGYSVGCY 107 (510)
T ss_pred cEEEEeCC----CchHHHHHHHHHHHHhcCCCeEEE
Confidence 45666663 599999999999999999999764
No 392
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=32.38 E-value=60 Score=32.63 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=30.7
Q ss_pred EEEeCC----------ccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 008476 4 VLVTGG----------VVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (564)
Q Consensus 4 i~vtgg----------v~s~~gkg~~~~s~g~ll~~~g~~v~~~k 38 (564)
|+||+| .+|.-.-|-+.++|...|.++|++|+.+-
T Consensus 3 vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~ 47 (229)
T PRK06732 3 ILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVT 47 (229)
T ss_pred EEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEE
Confidence 678888 68888899999999999999999999873
No 393
>PRK08309 short chain dehydrogenase; Provisional
Probab=32.31 E-value=71 Score=30.80 Aligned_cols=27 Identities=33% Similarity=0.582 Sum_probs=20.1
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
++|||| ||+| .+ +.+.|.++|++|.+.
T Consensus 3 vlVtGG--tG~g----g~-la~~L~~~G~~V~v~ 29 (177)
T PRK08309 3 ALVIGG--TGML----KR-VSLWLCEKGFHVSVI 29 (177)
T ss_pred EEEECc--CHHH----HH-HHHHHHHCcCEEEEE
Confidence 789999 4554 23 677778899999864
No 394
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=32.24 E-value=1.8e+02 Score=28.99 Aligned_cols=77 Identities=18% Similarity=0.191 Sum_probs=48.3
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCch
Q 008476 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (564)
Q Consensus 298 ~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~ 377 (564)
-+|.+||- -..+...|.++-+..|+... .=.|+.-. |++-. .+....+|.|++.+ +
T Consensus 62 ~~ILfVgt---k~~~~~~V~~~A~~~g~~~v---~~RWlgGt-LTN~~-----------~~~~~~Pdlliv~d-p----- 117 (196)
T TIGR01012 62 EDILVVSA---RIYGQKPVLKFAKVTGARAI---AGRFTPGT-FTNPM-----------QKAFREPEVVVVTD-P----- 117 (196)
T ss_pred CeEEEEec---CHHHHHHHHHHHHHhCCceE---CCeeCCCC-CCCcc-----------ccccCCCCEEEEEC-C-----
Confidence 37999972 22244456666666666552 33787642 32210 02245788898875 2
Q ss_pred hHHHHHHHHHHHcCCCEEEEe
Q 008476 378 QGKILAAKYAREHRIPYLGIC 398 (564)
Q Consensus 378 eg~i~~ir~a~e~~iPiLGIC 398 (564)
.....++++|..-++|+.|||
T Consensus 118 ~~~~~Av~EA~~l~IP~Iai~ 138 (196)
T TIGR01012 118 RADHQALKEASEVGIPIVALC 138 (196)
T ss_pred ccccHHHHHHHHcCCCEEEEe
Confidence 234578999999999999998
No 395
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=32.19 E-value=2.9e+02 Score=26.26 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=20.9
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCC
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIP 393 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iP 393 (564)
.++|-||.+||-|-...+-..++++...+..+|
T Consensus 62 ~~~DlVIttGGtg~g~~D~t~eal~~l~~~~l~ 94 (163)
T TIGR02667 62 PDVQVILITGGTGFTGRDVTPEALEPLFDKTVE 94 (163)
T ss_pred CCCCEEEECCCcCCCCCCCcHHHHHHHHCCcCC
Confidence 479999999975543333344566665555444
No 396
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=32.17 E-value=1.4e+02 Score=25.86 Aligned_cols=73 Identities=18% Similarity=0.247 Sum_probs=42.0
Q ss_pred chHHHHHHHHHHcCCcceeeeEEEEec-CCCcccccccCCchhhhH-HHHhccCCCEEEeCCCCCCCchhHHHHHHHHHH
Q 008476 311 DAYLSILKALLHASVDLRKKLVIDWIP-ACDLEDATEKENPDAYKA-AWKLLKGADGILVPGGFGNRGVQGKILAAKYAR 388 (564)
Q Consensus 311 Day~SIi~aL~~aG~~v~v~v~i~wi~-s~~le~~~~~~~p~~y~~-~~~~L~~~DGIllpGGfG~r~~eg~i~~ir~a~ 388 (564)
.++....+.|+..|..+ +++.+.. .+. .+++.|=. ....|..||+|++-+|..+ ..|...-...|+
T Consensus 16 ~~f~~~a~~L~~~G~~v---vnPa~~~~~~~-------~~~~~ym~~~l~~L~~cD~i~~l~gWe~--S~GA~~E~~~A~ 83 (92)
T PF14359_consen 16 PAFNAAAKRLRAKGYEV---VNPAELGIPEG-------LSWEEYMRICLAMLSDCDAIYMLPGWEN--SRGARLEHELAK 83 (92)
T ss_pred HHHHHHHHHHHHCCCEE---eCchhhCCCCC-------CCHHHHHHHHHHHHHhCCEEEEcCCccc--CcchHHHHHHHH
Confidence 36678888999999655 2333331 111 12223321 2345689999988776432 234555556677
Q ss_pred HcCCCEE
Q 008476 389 EHRIPYL 395 (564)
Q Consensus 389 e~~iPiL 395 (564)
..++|++
T Consensus 84 ~lGl~V~ 90 (92)
T PF14359_consen 84 KLGLPVI 90 (92)
T ss_pred HCCCeEe
Confidence 7777764
No 397
>PRK06523 short chain dehydrogenase; Provisional
Probab=32.15 E-value=58 Score=32.16 Aligned_cols=33 Identities=36% Similarity=0.485 Sum_probs=25.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (564)
|.|+||||- +|||+ ++.+.|.++|++|.+.--+
T Consensus 10 k~vlItGas-~gIG~-----~ia~~l~~~G~~v~~~~r~ 42 (260)
T PRK06523 10 KRALVTGGT-KGIGA-----ATVARLLEAGARVVTTARS 42 (260)
T ss_pred CEEEEECCC-CchhH-----HHHHHHHHCCCEEEEEeCC
Confidence 689999984 56664 5667777899999887554
No 398
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=31.93 E-value=1.5e+02 Score=28.88 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=24.6
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEe
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 398 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGIC 398 (564)
.++|||++.....+ .....++.+.++++|+.-+=
T Consensus 54 ~~~d~Iiv~~~~~~----~~~~~l~~~~~~gIpvv~~d 87 (257)
T PF13407_consen 54 QGVDGIIVSPVDPD----SLAPFLEKAKAAGIPVVTVD 87 (257)
T ss_dssp TTESEEEEESSSTT----TTHHHHHHHHHTTSEEEEES
T ss_pred hcCCEEEecCCCHH----HHHHHHHHHhhcCceEEEEe
Confidence 68999998874332 23366777888999998853
No 399
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=31.91 E-value=51 Score=34.25 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=8.9
Q ss_pred hhccCCeEEEEEeCC
Q 008476 490 RLENAGLSFTGKDET 504 (564)
Q Consensus 490 ~l~~~gl~~~a~s~d 504 (564)
+|.+.|+.++..++.
T Consensus 173 EL~~~gV~V~~v~PG 187 (265)
T COG0300 173 ELKGTGVKVTAVCPG 187 (265)
T ss_pred HhcCCCeEEEEEecC
Confidence 455566666666553
No 400
>PRK07806 short chain dehydrogenase; Provisional
Probab=31.88 E-value=54 Score=32.06 Aligned_cols=29 Identities=34% Similarity=0.573 Sum_probs=21.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (564)
|-|+||||- ++||+.++- .|.++|++|.+
T Consensus 7 k~vlItGas-ggiG~~l~~-----~l~~~G~~V~~ 35 (248)
T PRK07806 7 KTALVTGSS-RGIGADTAK-----ILAGAGAHVVV 35 (248)
T ss_pred cEEEEECCC-CcHHHHHHH-----HHHHCCCEEEE
Confidence 779999984 788877654 34567888765
No 401
>PRK06720 hypothetical protein; Provisional
Probab=31.79 E-value=52 Score=31.36 Aligned_cols=30 Identities=37% Similarity=0.585 Sum_probs=21.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|.++|||| -+|||..++. .|..+|++|.+.
T Consensus 17 k~~lVTGa-~~GIG~aia~-----~l~~~G~~V~l~ 46 (169)
T PRK06720 17 KVAIVTGG-GIGIGRNTAL-----LLAKQGAKVIVT 46 (169)
T ss_pred CEEEEecC-CChHHHHHHH-----HHHHCCCEEEEE
Confidence 68999999 4678877653 455678876654
No 402
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=31.77 E-value=1.8e+02 Score=28.71 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=21.2
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGI 397 (564)
.++||||+.+...+ .....++.+.+.++|+..+
T Consensus 54 ~~vdgiIi~~~~~~----~~~~~i~~~~~~~iPvV~~ 86 (273)
T cd06309 54 QGVDVIILAPVVET----GWDPVLKEAKAAGIPVILV 86 (273)
T ss_pred cCCCEEEEcCCccc----cchHHHHHHHHCCCCEEEE
Confidence 57999999763321 1123456677778887665
No 403
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=31.70 E-value=56 Score=32.96 Aligned_cols=32 Identities=34% Similarity=0.378 Sum_probs=26.3
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 008476 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (564)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp 41 (564)
|+|||| .|-+.+.|..-|.++|+.|..+.-.+
T Consensus 3 ILVtG~------tGfiG~~l~~~L~~~g~~V~~~~r~~ 34 (314)
T COG0451 3 ILVTGG------AGFIGSHLVERLLAAGHDVRGLDRLR 34 (314)
T ss_pred EEEEcC------cccHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999998 56777899999999999888776433
No 404
>PRK05642 DNA replication initiation factor; Validated
Probab=31.63 E-value=33 Score=34.39 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=45.1
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCC
Q 008476 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDG 64 (564)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtm~p~~hgev~v~~dg 64 (564)
.+++.|. ||.||==-+.+++.-+..+|.+|..+..+=+.+-.+..+..++...+.+.||=
T Consensus 47 ~l~l~G~--~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi 106 (234)
T PRK05642 47 LIYLWGK--DGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDL 106 (234)
T ss_pred eEEEECC--CCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEech
Confidence 4677886 79999988999999888899999887776655543444555666677777763
No 405
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=31.51 E-value=2.7e+02 Score=28.27 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=46.6
Q ss_pred CceEEEEEeccCCC---------cchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEE
Q 008476 296 EPVRIAMVGKYTGL---------SDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGI 366 (564)
Q Consensus 296 ~~~~IavVGkY~~~---------~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGI 366 (564)
.+++|+++--.++. ...+..+.+.|+.. +.+.- ++.. .. +...++|.+
T Consensus 145 ~~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~------~~l~---~~-------------~IP~~~d~L 201 (271)
T PF09822_consen 145 EKPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEE------LNLA---NE-------------EIPDDADVL 201 (271)
T ss_pred cCceEEEEccccccccccccccCcchHHHHHHHHHhc-Cceee------cCCc---cc-------------ccCCCCCEE
Confidence 35678888666655 35788999999988 76532 2211 00 233789999
Q ss_pred EeCCCCCCCchhHHHHHHHHHHHcC
Q 008476 367 LVPGGFGNRGVQGKILAAKYAREHR 391 (564)
Q Consensus 367 llpGGfG~r~~eg~i~~ir~a~e~~ 391 (564)
||.| |-.+=.+..+.+++...+++
T Consensus 202 vi~~-P~~~ls~~e~~~l~~yl~~G 225 (271)
T PF09822_consen 202 VIAG-PKTDLSEEELYALDQYLMNG 225 (271)
T ss_pred EEEC-CCCCCCHHHHHHHHHHHHcC
Confidence 9988 44434466777777775543
No 406
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=31.44 E-value=88 Score=29.62 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=39.2
Q ss_pred EEEeCCCCCCCc---hhHH-HHHHHHHHHcCCCEEEEehh--------HHHHHHHhccccccccCCccccc
Q 008476 365 GILVPGGFGNRG---VQGK-ILAAKYAREHRIPYLGICLG--------MQVAVIEFARSVLNLRDANSTEF 423 (564)
Q Consensus 365 GIllpGGfG~r~---~eg~-i~~ir~a~e~~iPiLGICLG--------mQll~ia~g~~vlgl~dA~s~Ef 423 (564)
-|+++=|..+.+ .... ..+++.+++.+++++.|+.| |+-++-+-|++.+...|+++.+|
T Consensus 102 ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~~d~~~~~~ 172 (178)
T cd01451 102 IVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTEGRPVRRGLAKDLARALGGQYVRLPDLSADAI 172 (178)
T ss_pred EEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEcCcCCHHHH
Confidence 456676654432 1222 56677888899999999987 56666666777776666655544
No 407
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.26 E-value=56 Score=32.48 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=24.0
Q ss_pred EEEEEeCCc-cCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGV-VSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv-~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|-|+||||- .+|||+. +.+.|.++|.+|.+.
T Consensus 7 k~vlVtGas~~~giG~~-----~a~~l~~~G~~vi~~ 38 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAA-----ICKELAEAGADIFFT 38 (256)
T ss_pred cEEEEECCCCCCChHHH-----HHHHHHHCCCeEEEE
Confidence 789999998 4899965 456677789887653
No 408
>PRK07814 short chain dehydrogenase; Provisional
Probab=31.07 E-value=53 Score=32.72 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=24.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp 41 (564)
|.++|||| -++||+ ++.+.|.++|++|.+.-.+|
T Consensus 11 ~~vlItGa-sggIG~-----~~a~~l~~~G~~Vi~~~r~~ 44 (263)
T PRK07814 11 QVAVVTGA-GRGLGA-----AIALAFAEAGADVLIAARTE 44 (263)
T ss_pred CEEEEECC-CChHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 67899998 455665 45677778999987765444
No 409
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=31.04 E-value=57 Score=33.90 Aligned_cols=54 Identities=33% Similarity=0.568 Sum_probs=36.9
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccC
Q 008476 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMD 79 (564)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtm~p~~hgev~v~~dg~e~dldlg~yerf~~ 79 (564)
|=+||- -|.||=.....+++.|.++|.+|.++-+||= |||-.|-. ||.=-|.-.
T Consensus 32 iGiTG~--PGaGKSTli~~l~~~~~~~g~~VaVlAVDPS--------Sp~tGGAl------------LGDRiRM~~ 85 (266)
T PF03308_consen 32 IGITGP--PGAGKSTLIDALIRELRERGKRVAVLAVDPS--------SPFTGGAL------------LGDRIRMQE 85 (266)
T ss_dssp EEEEE---TTSSHHHHHHHHHHHHHHTT--EEEEEE-GG--------GGCC---S------------S--GGGCHH
T ss_pred EEeeCC--CCCcHHHHHHHHHHHHhhcCCceEEEEECCC--------CCCCCCcc------------cccHHHhcC
Confidence 445663 5889999999999999999999999999995 78888875 676666543
No 410
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.98 E-value=46 Score=34.64 Aligned_cols=36 Identities=33% Similarity=0.409 Sum_probs=28.8
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGICLGm 401 (564)
.++|-+++=||-|. .+.+++.+...++|+|||=+|.
T Consensus 41 ~~~d~vi~iGGDGT-----~L~aa~~~~~~~~PilgIn~G~ 76 (272)
T PRK02231 41 QRAQLAIVIGGDGN-----MLGRARVLAKYDIPLIGINRGN 76 (272)
T ss_pred cCCCEEEEECCcHH-----HHHHHHHhccCCCcEEEEeCCC
Confidence 46899999998663 6677777777789999998873
No 411
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=30.90 E-value=54 Score=32.84 Aligned_cols=30 Identities=23% Similarity=0.183 Sum_probs=22.2
Q ss_pred EEEEEeCCcc-CCcchHHHHHHHHHHHHHCCCeeEE
Q 008476 2 KYVLVTGGVV-SGLGKGVTASSIGVLLKACGLRVTC 36 (564)
Q Consensus 2 k~i~vtggv~-s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (564)
|-++||||-= +|||+.+ .+.|..+|++|.+
T Consensus 9 k~~lITGas~~~GIG~a~-----a~~la~~G~~v~~ 39 (260)
T PRK06603 9 KKGLITGIANNMSISWAI-----AQLAKKHGAELWF 39 (260)
T ss_pred cEEEEECCCCCcchHHHH-----HHHHHHcCCEEEE
Confidence 7899999964 4777754 4667778988754
No 412
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=30.89 E-value=2.2e+02 Score=27.68 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=19.9
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEE
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYL 395 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiL 395 (564)
.++||||+.+...+. ..++.+.++++|+.
T Consensus 54 ~~vdgiIi~~~~~~~------~~~~~l~~~~ipvV 82 (265)
T cd06299 54 QRVDGIIVVPHEQSA------EQLEDLLKRGIPVV 82 (265)
T ss_pred cCCCEEEEcCCCCCh------HHHHHHHhCCCCEE
Confidence 479999998743221 23677777888874
No 413
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=30.86 E-value=2.6e+02 Score=27.10 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=21.7
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEe
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 398 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGIC 398 (564)
.++||||+.++... . ...++.+.++++|++-+.
T Consensus 54 ~~vdgiii~~~~~~--~---~~~~~~~~~~~ipvV~~~ 86 (266)
T cd06282 54 QRVDGLILTVADAA--T---SPALDLLDAERVPYVLAY 86 (266)
T ss_pred cCCCEEEEecCCCC--c---hHHHHHHhhCCCCEEEEe
Confidence 47999999664321 1 124567778899986663
No 414
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=30.73 E-value=95 Score=26.80 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=30.2
Q ss_pred EEEEEeCCccCCcchHHH-HHHHHHHHHHCCCeeEEeeeccc
Q 008476 2 KYVLVTGGVVSGLGKGVT-ASSIGVLLKACGLRVTCIKIDPY 42 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~-~~s~g~ll~~~g~~v~~~k~dpy 42 (564)
|.++||| ||+|-... +..+=.+|+++|+.+.+...+.+
T Consensus 4 kILvvCg---sG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~ 42 (94)
T PRK10310 4 KIIVACG---GAVATSTMAAEEIKELCQSHNIPVELIQCRVN 42 (94)
T ss_pred eEEEECC---CchhHHHHHHHHHHHHHHHCCCeEEEEEecHH
Confidence 4678888 57777777 67888999999999988886654
No 415
>PRK07985 oxidoreductase; Provisional
Probab=30.68 E-value=55 Score=33.57 Aligned_cols=30 Identities=33% Similarity=0.513 Sum_probs=22.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|.++||||- +|||+. +.+.|.++|++|.+.
T Consensus 50 k~vlITGas-~gIG~a-----ia~~L~~~G~~Vi~~ 79 (294)
T PRK07985 50 RKALVTGGD-SGIGRA-----AAIAYAREGADVAIS 79 (294)
T ss_pred CEEEEECCC-CcHHHH-----HHHHHHHCCCEEEEe
Confidence 689999984 788864 556677889988653
No 416
>PRK07063 short chain dehydrogenase; Provisional
Probab=30.67 E-value=56 Score=32.32 Aligned_cols=30 Identities=33% Similarity=0.461 Sum_probs=22.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|-++||||- +|||+. +.+.|-++|++|.+.
T Consensus 8 k~vlVtGas-~gIG~~-----~a~~l~~~G~~vv~~ 37 (260)
T PRK07063 8 KVALVTGAA-QGIGAA-----IARAFAREGAAVALA 37 (260)
T ss_pred CEEEEECCC-chHHHH-----HHHHHHHCCCEEEEE
Confidence 679999985 788765 446677889988754
No 417
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.59 E-value=2.7e+02 Score=27.32 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=21.0
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGI 397 (564)
.++||||+.+.. . ......++.+.+.++|+..+
T Consensus 56 ~~vdgvii~~~~--~--~~~~~~l~~~~~~~ipvV~~ 88 (273)
T cd06310 56 RGPDAILLAPTD--A--KALVPPLKEAKDAGIPVVLI 88 (273)
T ss_pred hCCCEEEEcCCC--h--hhhHHHHHHHHHCCCCEEEe
Confidence 479999997532 1 11224556666778888765
No 418
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=30.48 E-value=1.8e+02 Score=31.98 Aligned_cols=82 Identities=21% Similarity=0.236 Sum_probs=0.0
Q ss_pred CCCCceEEEEEeccCCCcchHHH-HHHHHHHcCCcceeeeEEEEecC------CCcccccc----cCCchhhhHHHHhcc
Q 008476 293 GLHEPVRIAMVGKYTGLSDAYLS-ILKALLHASVDLRKKLVIDWIPA------CDLEDATE----KENPDAYKAAWKLLK 361 (564)
Q Consensus 293 ~~~~~~~IavVGkY~~~~Day~S-Ii~aL~~aG~~v~v~v~i~wi~s------~~le~~~~----~~~p~~y~~~~~~L~ 361 (564)
+..+..+|.++| +.-+=.| +.+.|.+.|+.+.+ .|. +++++... ..++ +.+.
T Consensus 3 ~~~~~~~v~viG----~G~sG~s~~a~~L~~~G~~V~~------~D~~~~~~~~~l~~~gi~~~~~~~~-------~~~~ 65 (461)
T PRK00421 3 ELRRIKRIHFVG----IGGIGMSGLAEVLLNLGYKVSG------SDLKESAVTQRLLELGAIIFIGHDA-------ENIK 65 (461)
T ss_pred CcCCCCEEEEEE----EchhhHHHHHHHHHhCCCeEEE------ECCCCChHHHHHHHCCCEEeCCCCH-------HHCC
Q ss_pred CCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEE
Q 008476 362 GADGILVPGGFGNRGVQGKILAAKYAREHRIPYLG 396 (564)
Q Consensus 362 ~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLG 396 (564)
++|-||+|+|-.... ..++.|+++++|+++
T Consensus 66 ~~d~vv~spgi~~~~-----~~~~~a~~~~i~i~~ 95 (461)
T PRK00421 66 DADVVVYSSAIPDDN-----PELVAARELGIPVVR 95 (461)
T ss_pred CCCEEEECCCCCCCC-----HHHHHHHHCCCcEEe
No 419
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=30.34 E-value=1.3e+02 Score=28.09 Aligned_cols=71 Identities=21% Similarity=0.182 Sum_probs=38.1
Q ss_pred cchHH-HHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhH-HHHhcc--CCCEEEeCCCCCCCchhHHHHHHH
Q 008476 310 SDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKA-AWKLLK--GADGILVPGGFGNRGVQGKILAAK 385 (564)
Q Consensus 310 ~Day~-SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~-~~~~L~--~~DGIllpGGfG~r~~eg~i~~ir 385 (564)
.|+-. .+...|+..|+++... .+-+++. +.-.+ +.+.++ .+|-||.+||-|--..+-..++++
T Consensus 18 ~d~n~~~l~~~l~~~G~~v~~~----~~v~Dd~---------~~i~~~l~~~~~~~~~DlVittGG~s~g~~D~t~~al~ 84 (152)
T cd00886 18 EDRSGPALVELLEEAGHEVVAY----EIVPDDK---------DEIREALIEWADEDGVDLILTTGGTGLAPRDVTPEATR 84 (152)
T ss_pred ccchHHHHHHHHHHcCCeeeeE----EEcCCCH---------HHHHHHHHHHHhcCCCCEEEECCCcCCCCCcCcHHHHH
Confidence 44433 4666699999876431 1212211 11111 222334 799999999865544344455666
Q ss_pred HHHHcCCC
Q 008476 386 YAREHRIP 393 (564)
Q Consensus 386 ~a~e~~iP 393 (564)
.+.++..|
T Consensus 85 ~~~~~~l~ 92 (152)
T cd00886 85 PLLDKELP 92 (152)
T ss_pred HHhCCcCc
Confidence 66655444
No 420
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.21 E-value=1.4e+02 Score=31.55 Aligned_cols=83 Identities=19% Similarity=0.105 Sum_probs=46.9
Q ss_pred EEEEEeccCCCc--chHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCc
Q 008476 299 RIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (564)
Q Consensus 299 ~IavVGkY~~~~--Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~ 376 (564)
||+++-+-+.-. ....-+.+.|+..|+++.+. ....+... .. .+ .......+|-+++-||-|.
T Consensus 5 kv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~----~~~~~~~~---~~----~~--~~~~~~~~d~vi~~GGDGT-- 69 (305)
T PRK02645 5 QVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMG----PSGPKDNP---YP----VF--LASASELIDLAIVLGGDGT-- 69 (305)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEe----cCchhhcc---cc----ch--hhccccCcCEEEEECCcHH--
Confidence 588875443211 12335677788888876442 01111100 00 00 0012246899999997653
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeh
Q 008476 377 VQGKILAAKYAREHRIPYLGICL 399 (564)
Q Consensus 377 ~eg~i~~ir~a~e~~iPiLGICL 399 (564)
.+.+++.....++|++||=.
T Consensus 70 ---~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 70 ---VLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred ---HHHHHHHhccCCCCEEEEec
Confidence 55677766667999999987
No 421
>COG2403 Predicted GTPase [General function prediction only]
Probab=30.18 E-value=51 Score=36.02 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=27.6
Q ss_pred CccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 008476 9 GVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (564)
Q Consensus 9 gv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~ 39 (564)
|+=-|.||--+++-++++|++|||+|+++..
T Consensus 133 atrtg~GKsaVS~~v~r~l~ergyrv~vVrh 163 (449)
T COG2403 133 ATRTGVGKSAVSRYVARLLRERGYRVCVVRH 163 (449)
T ss_pred EeccccchhHHHHHHHHHHHHcCCceEEEec
Confidence 3556889999999999999999999999976
No 422
>PRK06182 short chain dehydrogenase; Validated
Probab=30.04 E-value=59 Score=32.54 Aligned_cols=31 Identities=42% Similarity=0.483 Sum_probs=23.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k 38 (564)
|-|+|||| -||||+.++ +.|.++|++|.+.-
T Consensus 4 k~vlItGa-sggiG~~la-----~~l~~~G~~V~~~~ 34 (273)
T PRK06182 4 KVALVTGA-SSGIGKATA-----RRLAAQGYTVYGAA 34 (273)
T ss_pred CEEEEECC-CChHHHHHH-----HHHHHCCCEEEEEe
Confidence 78999997 478887654 56667899988653
No 423
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=30.02 E-value=2.7e+02 Score=30.77 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=24.4
Q ss_pred eEEEEEeccCCC--c-ch-HHHHHHHHHHcCCcceeee
Q 008476 298 VRIAMVGKYTGL--S-DA-YLSILKALLHASVDLRKKL 331 (564)
Q Consensus 298 ~~IavVGkY~~~--~-Da-y~SIi~aL~~aG~~v~v~v 331 (564)
+||+|+|-|+.. . +| -.+++++|+...-.+.+.|
T Consensus 1 ~~i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~v 38 (426)
T PRK10017 1 MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDV 38 (426)
T ss_pred CeEEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEEE
Confidence 479999988743 2 33 4499999999887665543
No 424
>PRK09242 tropinone reductase; Provisional
Probab=30.01 E-value=55 Score=32.32 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=22.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|.++|||| -+|||+. +.+.|.++|++|.++
T Consensus 10 k~~lItGa-~~gIG~~-----~a~~l~~~G~~v~~~ 39 (257)
T PRK09242 10 QTALITGA-SKGIGLA-----IAREFLGLGADVLIV 39 (257)
T ss_pred CEEEEeCC-CchHHHH-----HHHHHHHcCCEEEEE
Confidence 78999988 5677754 455677789877665
No 425
>PLN00198 anthocyanidin reductase; Provisional
Probab=29.99 E-value=79 Score=32.85 Aligned_cols=34 Identities=38% Similarity=0.396 Sum_probs=26.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dp 41 (564)
|-|+||||- |-+.+.|...|..+|++|.++-.|+
T Consensus 10 ~~vlItG~~------GfIG~~l~~~L~~~g~~V~~~~r~~ 43 (338)
T PLN00198 10 KTACVIGGT------GFLASLLIKLLLQKGYAVNTTVRDP 43 (338)
T ss_pred CeEEEECCc------hHHHHHHHHHHHHCCCEEEEEECCC
Confidence 679999985 5667778888888999998765554
No 426
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=29.79 E-value=63 Score=33.05 Aligned_cols=28 Identities=32% Similarity=0.597 Sum_probs=23.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHH-CCCee
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKA-CGLRV 34 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~-~g~~v 34 (564)
|+.|-+|||.-|| | |++.++|++ .|+.|
T Consensus 1 M~iIGlTGgIgSG--K----StVs~~L~~~~G~~v 29 (244)
T PTZ00451 1 MILIGLTGGIACG--K----STVSRILREEHHIEV 29 (244)
T ss_pred CeEEEEECCCCCC--H----HHHHHHHHHHcCCeE
Confidence 7889999998774 5 678899998 59876
No 427
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=29.78 E-value=65 Score=30.17 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=20.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHH
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLL 27 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll 27 (564)
+++|+|+|+ +|-||...+..|..-+
T Consensus 3 ~~ii~i~G~--~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGG--PGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECC--CCCCHHHHHHHHHHHh
Confidence 468999998 9999999998887643
No 428
>PRK05599 hypothetical protein; Provisional
Probab=29.69 E-value=47 Score=32.93 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=20.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|.++|||| -+|||+.++.+ |. .|.+|.+.
T Consensus 1 ~~vlItGa-s~GIG~aia~~-----l~-~g~~Vil~ 29 (246)
T PRK05599 1 MSILILGG-TSDIAGEIATL-----LC-HGEDVVLA 29 (246)
T ss_pred CeEEEEeC-ccHHHHHHHHH-----Hh-CCCEEEEE
Confidence 46899999 58999988764 33 38877553
No 429
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=29.63 E-value=2.8e+02 Score=24.28 Aligned_cols=39 Identities=10% Similarity=0.123 Sum_probs=28.3
Q ss_pred ccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehh
Q 008476 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (564)
Q Consensus 360 L~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGICLG 400 (564)
+..-|-+|+-.-.|. ....+++++.|++++.|+++|+-.
T Consensus 45 ~~~~d~vi~iS~sG~--t~~~~~~~~~a~~~g~~vi~iT~~ 83 (128)
T cd05014 45 VTPGDVVIAISNSGE--TDELLNLLPHLKRRGAPIIAITGN 83 (128)
T ss_pred CCCCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEeCC
Confidence 344466766554443 356789999999999999999853
No 430
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=29.62 E-value=55 Score=31.62 Aligned_cols=31 Identities=29% Similarity=0.377 Sum_probs=26.7
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeE
Q 008476 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVT 35 (564)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~ 35 (564)
.|.+|| +||-||-..|.++-+.|-.||.---
T Consensus 33 viWiTG--LSgSGKStlACaL~q~L~qrgkl~Y 63 (207)
T KOG0635|consen 33 VIWITG--LSGSGKSTLACALSQALLQRGKLTY 63 (207)
T ss_pred EEEEec--cCCCCchhHHHHHHHHHHhcCceEE
Confidence 478888 8999999999999999999986543
No 431
>PLN02778 3,5-epimerase/4-reductase
Probab=29.54 E-value=67 Score=33.22 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=24.6
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 008476 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (564)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (564)
=|+|||| -|-+.+.|-+.|.++|++|+.
T Consensus 11 kiLVtG~------tGfiG~~l~~~L~~~g~~V~~ 38 (298)
T PLN02778 11 KFLIYGK------TGWIGGLLGKLCQEQGIDFHY 38 (298)
T ss_pred eEEEECC------CCHHHHHHHHHHHhCCCEEEE
Confidence 3899996 599999999999999999874
No 432
>PRK06761 hypothetical protein; Provisional
Probab=29.52 E-value=62 Score=33.89 Aligned_cols=33 Identities=30% Similarity=0.545 Sum_probs=29.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (564)
+.|+|+|- +|-||-..+..+...|..+|++|..
T Consensus 4 ~lIvI~G~--~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 4 KLIIIEGL--PGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred cEEEEECC--CCCCHHHHHHHHHHhcCcCceEEEE
Confidence 68999996 8999999999999999999998765
No 433
>PRK08267 short chain dehydrogenase; Provisional
Probab=29.49 E-value=75 Score=31.43 Aligned_cols=31 Identities=39% Similarity=0.698 Sum_probs=24.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
||-++||||. ++||+.+ .+.|-++|++|.++
T Consensus 1 mk~vlItGas-g~iG~~l-----a~~l~~~G~~V~~~ 31 (260)
T PRK08267 1 MKSIFITGAA-SGIGRAT-----ALLFAAEGWRVGAY 31 (260)
T ss_pred CcEEEEeCCC-chHHHHH-----HHHHHHCCCeEEEE
Confidence 7889999987 6777654 45566789998876
No 434
>PRK09186 flagellin modification protein A; Provisional
Probab=29.48 E-value=62 Score=31.75 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=23.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|-++||||- +|||+. +.+.|.++|++|.+.
T Consensus 5 k~vlItGas-~giG~~-----~a~~l~~~g~~v~~~ 34 (256)
T PRK09186 5 KTILITGAG-GLIGSA-----LVKAILEAGGIVIAA 34 (256)
T ss_pred CEEEEECCC-chHHHH-----HHHHHHHCCCEEEEE
Confidence 789999994 677765 456677889998776
No 435
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=29.47 E-value=65 Score=35.24 Aligned_cols=37 Identities=32% Similarity=0.393 Sum_probs=30.3
Q ss_pred EEEEEeCC----------ccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 008476 2 KYVLVTGG----------VVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (564)
Q Consensus 2 k~i~vtgg----------v~s~~gkg~~~~s~g~ll~~~g~~v~~~k 38 (564)
|-|+|||| .+|--.-|-+...|.+-|..+|.+|+.+-
T Consensus 186 ~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~ 232 (390)
T TIGR00521 186 KRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLIT 232 (390)
T ss_pred ceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeC
Confidence 67899999 45666667788889999999999998763
No 436
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=29.21 E-value=3.4e+02 Score=27.34 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=20.7
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGI 397 (564)
.++|||++.+. +.. .....++.+.+.++|+.-+
T Consensus 81 ~~~dgiii~~~--~~~--~~~~~l~~~~~~~ipvV~~ 113 (295)
T PRK10653 81 RGTKILLINPT--DSD--AVGNAVKMANQANIPVITL 113 (295)
T ss_pred cCCCEEEEcCC--ChH--HHHHHHHHHHHCCCCEEEE
Confidence 47999998752 211 1224556677778887655
No 437
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=29.13 E-value=56 Score=32.29 Aligned_cols=27 Identities=33% Similarity=0.661 Sum_probs=22.2
Q ss_pred CcchHHHHHHHHHHHHH--CCCeeEEeee
Q 008476 13 GLGKGVTASSIGVLLKA--CGLRVTCIKI 39 (564)
Q Consensus 13 ~~gkg~~~~s~g~ll~~--~g~~v~~~k~ 39 (564)
|=|||-|+|++|..|++ +|++|.++.|
T Consensus 30 g~GkGKtt~a~g~a~ra~g~G~~V~ivQF 58 (191)
T PRK05986 30 GNGKGKSTAAFGMALRAVGHGKKVGVVQF 58 (191)
T ss_pred CCCCChHHHHHHHHHHHHHCCCeEEEEEE
Confidence 45999999999998886 5778888766
No 438
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=29.10 E-value=58 Score=32.26 Aligned_cols=30 Identities=33% Similarity=0.519 Sum_probs=22.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|.++|||| -+|||+ ++.+.|.++|++|...
T Consensus 11 k~~lItG~-~~gIG~-----a~a~~l~~~G~~vv~~ 40 (253)
T PRK08993 11 KVAVVTGC-DTGLGQ-----GMALGLAEAGCDIVGI 40 (253)
T ss_pred CEEEEECC-CchHHH-----HHHHHHHHCCCEEEEe
Confidence 78999998 466665 5567777889988653
No 439
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=29.08 E-value=61 Score=34.04 Aligned_cols=28 Identities=36% Similarity=0.571 Sum_probs=21.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v 34 (564)
|+.|+||| +||-||-.+. +.|+..||-+
T Consensus 1 m~~vIiTG--lSGaGKs~Al----~~lED~Gy~c 28 (284)
T PF03668_consen 1 MELVIITG--LSGAGKSTAL----RALEDLGYYC 28 (284)
T ss_pred CeEEEEeC--CCcCCHHHHH----HHHHhcCeeE
Confidence 78899999 8999996544 5678888765
No 440
>PRK08278 short chain dehydrogenase; Provisional
Probab=28.99 E-value=57 Score=32.89 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=22.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|-++|||| -+|||+. |.+.|.++|++|.+.
T Consensus 7 k~vlItGa-s~gIG~~-----ia~~l~~~G~~V~~~ 36 (273)
T PRK08278 7 KTLFITGA-SRGIGLA-----IALRAARDGANIVIA 36 (273)
T ss_pred CEEEEECC-CchHHHH-----HHHHHHHCCCEEEEE
Confidence 67999999 4677665 456677789888765
No 441
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=28.95 E-value=46 Score=34.67 Aligned_cols=21 Identities=48% Similarity=0.789 Sum_probs=17.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHH
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSI 23 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~ 23 (564)
|+.|+||| +||-||.++.-|+
T Consensus 1 m~lvIVTG--lSGAGKsvAl~~l 21 (286)
T COG1660 1 MRLVIVTG--LSGAGKSVALRVL 21 (286)
T ss_pred CcEEEEec--CCCCcHHHHHHHH
Confidence 67899999 8999999987654
No 442
>PRK09271 flavodoxin; Provisional
Probab=28.92 E-value=2.6e+02 Score=26.16 Aligned_cols=41 Identities=10% Similarity=-0.151 Sum_probs=20.6
Q ss_pred hccCCCEEEeCC---CCCC-Cc-hhHHHHHHHHHHHcCCCEEEEeh
Q 008476 359 LLKGADGILVPG---GFGN-RG-VQGKILAAKYAREHRIPYLGICL 399 (564)
Q Consensus 359 ~L~~~DGIllpG---GfG~-r~-~eg~i~~ir~a~e~~iPiLGICL 399 (564)
.+.++|+|+|.- |.|. |. +...+..+.....+++++.-++.
T Consensus 48 ~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~avfgs 93 (160)
T PRK09271 48 DPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNVAVFGT 93 (160)
T ss_pred CcccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeEEEEec
Confidence 356789998866 3343 21 33334344333334555444444
No 443
>PLN02780 ketoreductase/ oxidoreductase
Probab=28.89 E-value=51 Score=34.55 Aligned_cols=32 Identities=34% Similarity=0.587 Sum_probs=24.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~ 39 (564)
|.++|||| -||||+.+ .+.|..+|++|.+.=.
T Consensus 54 ~~~lITGA-s~GIG~al-----A~~La~~G~~Vil~~R 85 (320)
T PLN02780 54 SWALVTGP-TDGIGKGF-----AFQLARKGLNLVLVAR 85 (320)
T ss_pred CEEEEeCC-CcHHHHHH-----HHHHHHCCCCEEEEEC
Confidence 68999998 58888765 4667778999877643
No 444
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=28.89 E-value=72 Score=30.72 Aligned_cols=39 Identities=26% Similarity=0.252 Sum_probs=31.2
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 008476 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (564)
Q Consensus 3 ~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~dpyl 43 (564)
=++++|. +|.||=-.|++||.-+-.+|++|..++.+-.+
T Consensus 49 ~l~l~G~--~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~ 87 (178)
T PF01695_consen 49 NLILYGP--PGTGKTHLAVAIANEAIRKGYSVLFITASDLL 87 (178)
T ss_dssp EEEEEES--TTSSHHHHHHHHHHHHHHTT--EEEEEHHHHH
T ss_pred EEEEEhh--HhHHHHHHHHHHHHHhccCCcceeEeecCcee
Confidence 4678886 79999999999999888899999998876443
No 445
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=28.70 E-value=73 Score=32.69 Aligned_cols=73 Identities=16% Similarity=0.232 Sum_probs=48.2
Q ss_pred EeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHH
Q 008476 303 VGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKIL 382 (564)
Q Consensus 303 VGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~eg~i~ 382 (564)
.|||. ++.-+.++++.+|.++ ++|-+.-++...-. ..+.+|+.+..-+--++|+-.|-+..+..+.
T Consensus 15 Tgky~----s~~~m~~ai~aSg~ev-vTvalRR~~~~~~~---------~~~~~~~~i~~~~~~lLPNTaGc~tA~EAv~ 80 (247)
T PF05690_consen 15 TGKYP----SPEVMREAIEASGAEV-VTVALRRVNLGSKP---------GGDNILDYIDRSGYTLLPNTAGCRTAEEAVR 80 (247)
T ss_dssp -STSS----SHHHHHHHHHHTT-SE-EEEECCGSTTTS-T---------TCHHCCCCTTCCTSEEEEE-TT-SSHHHHHH
T ss_pred cCCCC----CHHHHHHHHHHhCCcE-EEEEEecccCCCCC---------CCccHHHHhcccCCEECCcCCCCCCHHHHHH
Confidence 35887 7788899999999998 34555555544310 0123455566566679999888888888888
Q ss_pred HHHHHHH
Q 008476 383 AAKYARE 389 (564)
Q Consensus 383 ~ir~a~e 389 (564)
.++-+||
T Consensus 81 ~A~laRe 87 (247)
T PF05690_consen 81 TARLARE 87 (247)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888887
No 446
>PRK07677 short chain dehydrogenase; Provisional
Probab=28.69 E-value=65 Score=31.76 Aligned_cols=31 Identities=35% Similarity=0.550 Sum_probs=23.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k 38 (564)
|.++|||| -+|||+.+ .+.|.++|++|.+.=
T Consensus 2 k~~lItG~-s~giG~~i-----a~~l~~~G~~Vi~~~ 32 (252)
T PRK07677 2 KVVIITGG-SSGMGKAM-----AKRFAEEGANVVITG 32 (252)
T ss_pred CEEEEeCC-CChHHHHH-----HHHHHHCCCEEEEEe
Confidence 77899999 67777654 556667899887653
No 447
>PF07505 Gp37_Gp68: Phage protein Gp37/Gp68; InterPro: IPR011101 This entry is represented by Burkholderia phage phiE125, Gp37. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=28.63 E-value=91 Score=32.36 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=32.0
Q ss_pred hccCCCEEEeCC--CCCCCch--hHHHHHHHHHHHcCCCEEEEehh
Q 008476 359 LLKGADGILVPG--GFGNRGV--QGKILAAKYAREHRIPYLGICLG 400 (564)
Q Consensus 359 ~L~~~DGIllpG--GfG~r~~--eg~i~~ir~a~e~~iPiLGICLG 400 (564)
.+.+.|-||+.| |++.|.. +-...+-+.|.+.++|||=-=.|
T Consensus 185 ~~~~IdWVIvGGESG~~ARp~~~~Wvr~irdqC~~~gvpFffKQwG 230 (261)
T PF07505_consen 185 DLEGIDWVIVGGESGPGARPMHPDWVRSIRDQCAAAGVPFFFKQWG 230 (261)
T ss_pred cCCCCCEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 467899999998 7777754 55667777889999999855444
No 448
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=28.34 E-value=2.8e+02 Score=28.67 Aligned_cols=74 Identities=20% Similarity=0.216 Sum_probs=41.3
Q ss_pred HHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHh--ccCCCEEEeCC-CCCCCchhHHHHHHHHHHHc
Q 008476 314 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL--LKGADGILVPG-GFGNRGVQGKILAAKYAREH 390 (564)
Q Consensus 314 ~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~--L~~~DGIllpG-GfG~r~~eg~i~~ir~a~e~ 390 (564)
..+++.-+..++.+.+--++..-.+..+... +.+. .+++. ...+|||+++| ..|.+....++..+|.+..
T Consensus 128 ~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~----~~~~--~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~- 200 (254)
T PF03437_consen 128 GELLRYRKRLGADVKILADVHVKHSSPLATR----DLEE--AAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVP- 200 (254)
T ss_pred HHHHHHHHHcCCCeEEEeeechhhcccCCCC----CHHH--HHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCC-
Confidence 3566666666777555334333333333221 1111 12222 35799999999 3566655556666666554
Q ss_pred CCCEE
Q 008476 391 RIPYL 395 (564)
Q Consensus 391 ~iPiL 395 (564)
+|+|
T Consensus 201 -~PVl 204 (254)
T PF03437_consen 201 -VPVL 204 (254)
T ss_pred -CCEE
Confidence 8987
No 449
>PRK12743 oxidoreductase; Provisional
Probab=28.13 E-value=66 Score=31.85 Aligned_cols=30 Identities=30% Similarity=0.488 Sum_probs=21.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (564)
+|-++|||| -|+||.. +.+.|-++|++|.+
T Consensus 2 ~k~vlItGa-s~giG~~-----~a~~l~~~G~~V~~ 31 (256)
T PRK12743 2 AQVAIVTAS-DSGIGKA-----CALLLAQQGFDIGI 31 (256)
T ss_pred CCEEEEECC-CchHHHH-----HHHHHHHCCCEEEE
Confidence 367999998 4888854 55666667887654
No 450
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=28.08 E-value=83 Score=33.86 Aligned_cols=39 Identities=26% Similarity=0.419 Sum_probs=33.6
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHH-HCCCeeEEeeeccccc
Q 008476 4 VLVTGGVVSGLGKGVTASSIGVLLK-ACGLRVTCIKIDPYLN 44 (564)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~-~~g~~v~~~k~dpyln 44 (564)
+++|| ++|-||=..+..+...|. .+|++|..+-+|=++.
T Consensus 2 ~~l~G--l~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 2 CVLCG--LPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred eEEEC--CCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 45666 689999999999998886 7999999999998874
No 451
>PRK06057 short chain dehydrogenase; Provisional
Probab=28.00 E-value=65 Score=31.82 Aligned_cols=30 Identities=33% Similarity=0.434 Sum_probs=22.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|-|+||||- ++||+-+ .+.|.++|++|.++
T Consensus 8 ~~vlItGas-ggIG~~~-----a~~l~~~G~~v~~~ 37 (255)
T PRK06057 8 RVAVITGGG-SGIGLAT-----ARRLAAEGATVVVG 37 (255)
T ss_pred CEEEEECCC-chHHHHH-----HHHHHHcCCEEEEE
Confidence 678999994 6666544 46777889998875
No 452
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=27.85 E-value=5e+02 Score=27.39 Aligned_cols=66 Identities=21% Similarity=0.180 Sum_probs=40.1
Q ss_pred CceEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCccccc-c--------cCCchhhhHHHHhccCCCEE
Q 008476 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDAT-E--------KENPDAYKAAWKLLKGADGI 366 (564)
Q Consensus 296 ~~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~-~--------~~~p~~y~~~~~~L~~~DGI 366 (564)
+.+||+++||.. ..-.|.+++|...|+++.+ +.++.+.... . ...-..+++..+.++++|-|
T Consensus 151 ~gl~i~~vGd~~---~v~~Sl~~~l~~~g~~v~~------~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvv 221 (304)
T PRK00779 151 KGLKVAWVGDGN---NVANSLLLAAALLGFDLRV------ATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVV 221 (304)
T ss_pred CCcEEEEEeCCC---ccHHHHHHHHHHcCCEEEE------ECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEE
Confidence 357999999832 2667999999999988765 3333332110 0 00011234455678899988
Q ss_pred EeCC
Q 008476 367 LVPG 370 (564)
Q Consensus 367 llpG 370 (564)
....
T Consensus 222 y~~~ 225 (304)
T PRK00779 222 YTDV 225 (304)
T ss_pred EecC
Confidence 7753
No 453
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=27.84 E-value=78 Score=30.67 Aligned_cols=28 Identities=36% Similarity=0.534 Sum_probs=20.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v 34 (564)
|+-|.||||.-| ||. +++.+|++.|+.|
T Consensus 2 ~~~i~ltG~~gs--GKs----t~~~~l~~~g~~~ 29 (194)
T PRK00081 2 MLIIGLTGGIGS--GKS----TVANLFAELGAPV 29 (194)
T ss_pred CeEEEEECCCCC--CHH----HHHHHHHHcCCEE
Confidence 577999999755 564 5666777777643
No 454
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=27.83 E-value=64 Score=32.04 Aligned_cols=31 Identities=35% Similarity=0.583 Sum_probs=22.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k 38 (564)
|-++|||| -||||+. +.+.|.++|++|.+.-
T Consensus 7 k~vlVtGa-s~gIG~~-----ia~~l~~~G~~V~~~~ 37 (263)
T PRK06200 7 QVALITGG-GSGIGRA-----LVERFLAEGARVAVLE 37 (263)
T ss_pred CEEEEeCC-CchHHHH-----HHHHHHHCCCEEEEEe
Confidence 68999998 3677654 5566777899987753
No 455
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=27.79 E-value=79 Score=30.65 Aligned_cols=30 Identities=40% Similarity=0.677 Sum_probs=22.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (564)
||.++|||| -++||.. +.+.|-++|++|.+
T Consensus 1 ~~~~lItGa-~g~iG~~-----l~~~l~~~g~~v~~ 30 (247)
T PRK09730 1 MAIALVTGG-SRGIGRA-----TALLLAQEGYTVAV 30 (247)
T ss_pred CCEEEEeCC-CchHHHH-----HHHHHHHCCCEEEE
Confidence 688999999 3666655 55666678998865
No 456
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=27.77 E-value=3.1e+02 Score=27.84 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=21.8
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGI 397 (564)
.++||||+.+. ++ ......++.+.+.++|+.-+
T Consensus 56 ~~vdgiii~~~--~~--~~~~~~~~~~~~~giPvV~~ 88 (303)
T cd01539 56 KGVDLLAVNLV--DP--TAAQTVINKAKQKNIPVIFF 88 (303)
T ss_pred cCCCEEEEecC--ch--hhHHHHHHHHHHCCCCEEEe
Confidence 58999998653 21 12235667777889997654
No 457
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=27.71 E-value=48 Score=30.28 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=27.0
Q ss_pred hccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEE
Q 008476 359 LLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYL 395 (564)
Q Consensus 359 ~L~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiL 395 (564)
.|+.+|++|++-=+|...-.|....++.|.+.++|++
T Consensus 76 ~L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~~~~~V~ 112 (116)
T PF09152_consen 76 FLDACDELVVLDIPGWDDSEGIWAEIEAAEEMGMPVF 112 (116)
T ss_dssp HHHH-SEEEE---TTGGG-HHHHHHHHHHHHTT-EEE
T ss_pred HHHhcceeEEecCCCccccccHHHHHHHHHHcCCeEE
Confidence 3678999999997787777899999999999999986
No 458
>PRK09701 D-allose transporter subunit; Provisional
Probab=27.70 E-value=3.3e+02 Score=27.92 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=20.6
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGI 397 (564)
.++||||+.+...+ .....+..+.++++|+.-+
T Consensus 81 ~~vDgiIi~~~~~~----~~~~~l~~~~~~giPvV~~ 113 (311)
T PRK09701 81 KNYKGIAFAPLSSV----NLVMPVARAWKKGIYLVNL 113 (311)
T ss_pred cCCCEEEEeCCChH----HHHHHHHHHHHCCCcEEEe
Confidence 47999999874321 1123345566778998654
No 459
>PRK06125 short chain dehydrogenase; Provisional
Probab=27.69 E-value=67 Score=31.80 Aligned_cols=32 Identities=28% Similarity=0.451 Sum_probs=23.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~ 39 (564)
|.++|||| -+|||+.++. .|.++|++|.+.=.
T Consensus 8 k~vlItG~-~~giG~~ia~-----~l~~~G~~V~~~~r 39 (259)
T PRK06125 8 KRVLITGA-SKGIGAAAAE-----AFAAEGCHLHLVAR 39 (259)
T ss_pred CEEEEeCC-CchHHHHHHH-----HHHHcCCEEEEEeC
Confidence 78999998 5888887654 45567988877533
No 460
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=27.61 E-value=2.6e+02 Score=28.89 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=47.6
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCchh
Q 008476 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 378 (564)
Q Consensus 299 ~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~e 378 (564)
+|.+||- -..+...|.+.-++.|+... .=.|++-. +++- ....+..+|.|||.+ | .
T Consensus 73 ~Il~Vst---r~~~~~~V~k~A~~tg~~~i---~~Rw~pGt-lTN~-----------~~~~f~~P~llIV~D-p-----~ 128 (249)
T PTZ00254 73 DVVVVSS---RPYGQRAVLKFAQYTGASAI---AGRFTPGT-FTNQ-----------IQKKFMEPRLLIVTD-P-----R 128 (249)
T ss_pred cEEEEEc---CHHHHHHHHHHHHHhCCeEE---CCcccCCC-CCCc-----------cccccCCCCEEEEeC-C-----C
Confidence 4777751 12244567777777776652 23677642 2211 012346789999986 2 2
Q ss_pred HHHHHHHHHHHcCCCEEEEe
Q 008476 379 GKILAAKYAREHRIPYLGIC 398 (564)
Q Consensus 379 g~i~~ir~a~e~~iPiLGIC 398 (564)
....+++.|..-+||+.|+|
T Consensus 129 ~d~qAI~EA~~lnIPvIal~ 148 (249)
T PTZ00254 129 TDHQAIREASYVNIPVIALC 148 (249)
T ss_pred cchHHHHHHHHhCCCEEEEe
Confidence 23568888888899999999
No 461
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=27.56 E-value=71 Score=34.85 Aligned_cols=32 Identities=34% Similarity=0.457 Sum_probs=27.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|.|=|||= =|||-|++=|..+|++.|+||-..
T Consensus 50 ~~I~VtGT----NGKgSt~~~l~~iL~~~G~~vG~~ 81 (416)
T PRK10846 50 FVFTVAGT----NGKGTTCRTLESILMAAGYRVGVY 81 (416)
T ss_pred CEEEEECC----CChHHHHHHHHHHHHHcCCCceEE
Confidence 45667775 499999999999999999998665
No 462
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=27.46 E-value=2.3e+02 Score=30.46 Aligned_cols=72 Identities=14% Similarity=0.210 Sum_probs=50.7
Q ss_pred EeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHH
Q 008476 303 VGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKIL 382 (564)
Q Consensus 303 VGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~~eg~i~ 382 (564)
.|||. +..-+.++++.+|+++ ++|-+..++..+-.. ..+|+.+..-.--++|+-.|-+..+..+.
T Consensus 90 tg~y~----s~~~~~~a~~asg~e~-vTva~rr~~~~~~~~----------~~~~~~~~~~~~~~lpNTag~~ta~eAv~ 154 (326)
T PRK11840 90 TGKYK----DFEETAAAVEASGAEI-VTVAVRRVNVSDPGA----------PMLTDYIDPKKYTYLPNTAGCYTAEEAVR 154 (326)
T ss_pred cCCCC----CHHHHHHHHHHhCCCE-EEEEEEeecCcCCCc----------chHHHhhhhcCCEECccCCCCCCHHHHHH
Confidence 35887 6678899999999998 446677666321100 13566666545578999888888788888
Q ss_pred HHHHHHH
Q 008476 383 AAKYARE 389 (564)
Q Consensus 383 ~ir~a~e 389 (564)
.++.+||
T Consensus 155 ~a~lare 161 (326)
T PRK11840 155 TLRLARE 161 (326)
T ss_pred HHHHHHH
Confidence 8888877
No 463
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=27.46 E-value=3.4e+02 Score=26.11 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=18.6
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGI 397 (564)
.++||||+.+... ......++.+++.++|+..+
T Consensus 54 ~~vdgvi~~~~~~----~~~~~~~~~l~~~~ip~V~~ 86 (267)
T cd01536 54 QGVDGIIISPVDS----AALTPALKKANAAGIPVVTV 86 (267)
T ss_pred cCCCEEEEeCCCc----hhHHHHHHHHHHCCCcEEEe
Confidence 4899999876321 11112445556667776543
No 464
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=27.46 E-value=63 Score=33.45 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=21.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|-++||||- +|||.-+ .+.|..+|++|.+.
T Consensus 7 k~vlVTGas-~gIG~~~-----a~~L~~~G~~V~~~ 36 (322)
T PRK07453 7 GTVIITGAS-SGVGLYA-----AKALAKRGWHVIMA 36 (322)
T ss_pred CEEEEEcCC-ChHHHHH-----HHHHHHCCCEEEEE
Confidence 679999995 7777654 45566678887654
No 465
>PRK07478 short chain dehydrogenase; Provisional
Probab=27.46 E-value=67 Score=31.65 Aligned_cols=30 Identities=30% Similarity=0.512 Sum_probs=22.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|.++||||- +|||+.+ .+.|-++|++|.+.
T Consensus 7 k~~lItGas-~giG~~i-----a~~l~~~G~~v~~~ 36 (254)
T PRK07478 7 KVAIITGAS-SGIGRAA-----AKLFAREGAKVVVG 36 (254)
T ss_pred CEEEEeCCC-ChHHHHH-----HHHHHHCCCEEEEE
Confidence 689999986 7888765 44566789887654
No 466
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.38 E-value=4e+02 Score=26.08 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=20.7
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGI 397 (564)
.++||||+.+... + .....++.+.+.++|+.-+
T Consensus 54 ~~~dgiii~~~~~-~---~~~~~l~~~~~~~ipvV~~ 86 (277)
T cd06319 54 KGVSGIIISPTNS-S---AAVTLLKLAAQAKIPVVIA 86 (277)
T ss_pred cCCCEEEEcCCch-h---hhHHHHHHHHHCCCCEEEE
Confidence 6899999865321 1 1224556677778898643
No 467
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.26 E-value=84 Score=30.26 Aligned_cols=30 Identities=33% Similarity=0.481 Sum_probs=21.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (564)
+|.|+|||| -++| .+++...|.++|++|.+
T Consensus 6 ~~~vlItGa-sg~i-----G~~l~~~l~~~g~~v~~ 35 (249)
T PRK12825 6 GRVALVTGA-ARGL-----GRAIALRLARAGADVVV 35 (249)
T ss_pred CCEEEEeCC-CchH-----HHHHHHHHHHCCCeEEE
Confidence 468999998 3444 45666778889998755
No 468
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=27.06 E-value=5.2e+02 Score=27.66 Aligned_cols=102 Identities=13% Similarity=0.152 Sum_probs=56.7
Q ss_pred ccccCCchhhhhhhhhCCCcccEEEEeeCCCCCcchhccccccCCCCCCCeeeeCCCCCcccccHHHHHhhhHHHHHHHc
Q 008476 191 EQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVL 270 (564)
Q Consensus 191 e~ktkptq~svk~l~s~Gi~pd~lv~R~~~~l~~~~r~kisl~~~v~~~~Vi~~~dvdtiy~vp~~L~~qG~~~~i~~~l 270 (564)
--|--....+++-|.+. .|+||+|... ...-+.++-...+ .||+.-+ ..++=+..|-+- + -|.+.+
T Consensus 85 ~~kgEsl~DTarvls~y---~D~iv~R~~~---~~~~~~~a~~~~v---PVINa~~--~~~HPtQaL~Dl--~-Ti~e~~ 150 (334)
T PRK01713 85 IGHKESMKDTARVLGRM---YDAIEYRGFK---QSIVNELAEYAGV---PVFNGLT--DEFHPTQMLADV--L-TMIENC 150 (334)
T ss_pred CCCCcCHHHHHHHHHHh---CCEEEEEcCc---hHHHHHHHHhCCC---CEEECCC--CCCChHHHHHHH--H-HHHHHc
Confidence 34444666677777554 8999999753 3334444444443 5776633 333443333210 0 011111
Q ss_pred CCCCCCCccchHHHHHHHhhhcCCCCceEEEEEeccCCCcchHHHHHHHHHHcCCccee
Q 008476 271 NLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRK 329 (564)
Q Consensus 271 ~l~~~~~~~~~~~w~~~~~~~~~~~~~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v 329 (564)
+ ..-+..||+++||-. .. .-.|.+.++...|+++.+
T Consensus 151 g---------------------~~l~gl~ia~vGD~~-~~-v~~Sl~~~~~~~g~~v~~ 186 (334)
T PRK01713 151 D---------------------KPLSEISYVYIGDAR-NN-MGNSLLLIGAKLGMDVRI 186 (334)
T ss_pred C---------------------CCcCCcEEEEECCCc-cC-HHHHHHHHHHHcCCEEEE
Confidence 1 011357999999732 12 567889999999988765
No 469
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=26.98 E-value=1.1e+02 Score=29.77 Aligned_cols=106 Identities=20% Similarity=0.107 Sum_probs=62.9
Q ss_pred hcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHHHHHHhhhhcCCCCEEEEEee
Q 008476 102 RKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVS 181 (564)
Q Consensus 102 r~g~ylg~tvqviph~t~~i~~~i~~~~~~p~~~~~~~~d~~i~e~ggtvgdies~pf~ea~rq~~~~~~~~~~~~~h~~ 181 (564)
=+|.|-|...++=..+.+++.++|++..+ ..+.=+++-.+||-=|===+...+|.+|+ .+.. + +-..
T Consensus 53 ~~G~~~~~~~~~g~~~~~~~~~~ir~~le------~~d~~~i~~slgGGTGsG~~~~i~~~~~~----~~~~-~--~~~~ 119 (192)
T smart00864 53 TRGLGAGADPEVGREAAEESLDEIREELE------GADGVFITAGMGGGTGTGAAPVIAEIAKE----YGIL-T--VAVV 119 (192)
T ss_pred cccCCCCCChHHHHHHHHHHHHHHHHHhc------CCCEEEEeccCCCCccccHHHHHHHHHHH----cCCc-E--EEEE
Confidence 36889898888888899999999998864 22222455578875554444455666664 3432 2 4445
Q ss_pred eeeeecCCCccccCCchhhhhhhhhCCCcccEEEEeeCCCCCc
Q 008476 182 LVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDD 224 (564)
Q Consensus 182 ~vp~~~~~~e~ktkptq~svk~l~s~Gi~pd~lv~R~~~~l~~ 224 (564)
..|.. .|-.++| ++++.-|+.+.=..|.+++=+-..+..
T Consensus 120 v~P~~---~e~~~~~-~Na~~~l~~l~~~~d~~i~~dN~~l~~ 158 (192)
T smart00864 120 TKPFV---FEGVVRP-YNAELGLEELREHVDSLIVIDNDALLD 158 (192)
T ss_pred EEeEe---ecchhHH-HHHHHHHHHHHHhCCEEEEEEhHHHHH
Confidence 66733 3333322 344444444444678888766544433
No 470
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.88 E-value=73 Score=31.94 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=22.9
Q ss_pred EEEEEeCCc-cCCcchHHHHHHHHHHHHHCCCeeEE
Q 008476 2 KYVLVTGGV-VSGLGKGVTASSIGVLLKACGLRVTC 36 (564)
Q Consensus 2 k~i~vtggv-~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (564)
|-++||||- -+|||+.+ .+.|-+.|++|.+
T Consensus 7 k~vlItGas~~~GIG~a~-----a~~l~~~G~~v~~ 37 (260)
T PRK06997 7 KRILITGLLSNRSIAYGI-----AKACKREGAELAF 37 (260)
T ss_pred cEEEEeCCCCCCcHHHHH-----HHHHHHCCCeEEE
Confidence 679999984 68999855 4556678998864
No 471
>PLN02686 cinnamoyl-CoA reductase
Probab=26.68 E-value=88 Score=33.37 Aligned_cols=31 Identities=32% Similarity=0.307 Sum_probs=24.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
+|-|+||||- |-+.+.+-+.|..+|++|.+.
T Consensus 53 ~k~VLVTGat------GfIG~~lv~~L~~~G~~V~~~ 83 (367)
T PLN02686 53 ARLVCVTGGV------SFLGLAIVDRLLRHGYSVRIA 83 (367)
T ss_pred CCEEEEECCc------hHHHHHHHHHHHHCCCEEEEE
Confidence 3779999986 567777778888889988754
No 472
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=26.67 E-value=3e+02 Score=27.86 Aligned_cols=32 Identities=28% Similarity=0.222 Sum_probs=20.4
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEE
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLG 396 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLG 396 (564)
.++||||+.+. . .......++.+.++++|+.-
T Consensus 55 ~~~DgiIi~~~-~---~~~~~~~~~~~~~~~iPvV~ 86 (298)
T cd06302 55 QGVDAIAVVPN-D---PDALEPVLKKAREAGIKVVT 86 (298)
T ss_pred cCCCEEEEecC-C---HHHHHHHHHHHHHCCCeEEE
Confidence 47999999752 1 12234556667777888654
No 473
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=26.65 E-value=95 Score=32.36 Aligned_cols=92 Identities=28% Similarity=0.357 Sum_probs=62.0
Q ss_pred CccccCCCCccccccCCCCCCCCcccchHh--hHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhccc-C----CCC
Q 008476 64 GGEVDLDLGNYERFMDIKLTRDNNITTGKI--YQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIP-V----DGK 136 (564)
Q Consensus 64 g~e~dldlg~yerf~~~~~~~~~~~t~g~i--y~~vi~ker~g~ylg~tvqviph~t~~i~~~i~~~~~~p-~----~~~ 136 (564)
|.+++| |.--|.|=|.-+++|..+++|+. -.+.=..+|+|+ +.++|+|.++.+- | + ++.
T Consensus 51 gv~V~l-l~~~~~~Pd~VFt~D~~~v~~~~avl~r~~~p~R~gE------------~~~~~~~~~~lgi-~i~~~~~~~~ 116 (267)
T COG1834 51 GVEVHL-LPPIEGLPDQVFTRDPGLVTGEGAVLARMGAPERRGE------------EEAIKETLESLGI-PIYPRVEAGV 116 (267)
T ss_pred CCEEEE-cCcccCCCcceEeccceeEecccEEEeccCChhhccC------------HHHHHHHHHHcCC-cccccccCCC
Confidence 334443 34567788888888888888854 345557899997 6789999999874 4 2 222
Q ss_pred CCC-CcEEEEeeCccc--cccCcchHHHHHHHhhhhcC
Q 008476 137 EGP-VDVCVIELGGTI--GDIESMPFIEALGQFSYRVG 171 (564)
Q Consensus 137 ~~~-~d~~i~e~ggtv--gdies~pf~ea~rq~~~~~~ 171 (564)
.++ =|+++.+ |.|| |.= .--=+|++|||+.-++
T Consensus 117 ~eG~GD~l~~~-~~~v~iG~s-~RTn~egi~~l~~~L~ 152 (267)
T COG1834 117 FEGAGDVLMDG-GDTVYIGYS-FRTNLEGIEQLQAWLE 152 (267)
T ss_pred ccccccEEEeC-CcEEEEEec-cccchHHHHHHHHHhc
Confidence 333 5888887 7776 321 1223588889988876
No 474
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=26.59 E-value=61 Score=30.40 Aligned_cols=75 Identities=19% Similarity=0.304 Sum_probs=37.8
Q ss_pred CceEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCC-CCC
Q 008476 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGG-FGN 374 (564)
Q Consensus 296 ~~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGG-fG~ 374 (564)
...+|++||-+ .-+++.|+..+.++.+- + .+.+........ -+. .+..+.|..+|.++++|- .-+
T Consensus 10 ~~~~V~~VG~f-------~P~~~~l~~~~~~v~v~-d---~~~~~~~~~~~~-~~~--~~~~~~l~~aD~viiTGsTlvN 75 (147)
T PF04016_consen 10 PGDKVGMVGYF-------QPLVEKLKERGAEVRVF-D---LNPDNIGEEPGD-VPD--EDAEEILPWADVVIITGSTLVN 75 (147)
T ss_dssp TTSEEEEES---------HCCHHHHCCCCSEEEEE-E---SSGGG--SSCT--EEG--GGHHHHGGG-SEEEEECHHCCT
T ss_pred CCCEEEEEcCc-------HHHHHHHhcCCCCEEEE-E---CCCCCCCCCCCc-CCH--HHHHHHHccCCEEEEEeeeeec
Confidence 45799999833 34688888777776551 1 111111000000 011 124467899999999993 233
Q ss_pred CchhHHHHHH
Q 008476 375 RGVQGKILAA 384 (564)
Q Consensus 375 r~~eg~i~~i 384 (564)
..++..++.+
T Consensus 76 ~Ti~~iL~~~ 85 (147)
T PF04016_consen 76 GTIDDILELA 85 (147)
T ss_dssp TTHHHHHHHT
T ss_pred CCHHHHHHhC
Confidence 3334443333
No 475
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=26.56 E-value=66 Score=33.38 Aligned_cols=29 Identities=38% Similarity=0.465 Sum_probs=21.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCC-CeeEE
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACG-LRVTC 36 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g-~~v~~ 36 (564)
|-++||||- ||||+.++ +.|-++| ++|.+
T Consensus 4 k~vlITGas-~GIG~aia-----~~L~~~G~~~V~l 33 (314)
T TIGR01289 4 PTVIITGAS-SGLGLYAA-----KALAATGEWHVIM 33 (314)
T ss_pred CEEEEECCC-ChHHHHHH-----HHHHHcCCCEEEE
Confidence 678999987 78887654 4456678 88754
No 476
>PRK07413 hypothetical protein; Validated
Probab=26.45 E-value=56 Score=35.74 Aligned_cols=30 Identities=40% Similarity=0.756 Sum_probs=0.0
Q ss_pred ccCCcchHHHHHHHHHHHHHCCC--------eeEEeee
Q 008476 10 VVSGLGKGVTASSIGVLLKACGL--------RVTCIKI 39 (564)
Q Consensus 10 v~s~~gkg~~~~s~g~ll~~~g~--------~v~~~k~ 39 (564)
|.-|=|||-|+|++|..|++.|. ||.++.|
T Consensus 24 VytG~GKGKTTAAlGlalRA~G~G~~~~~~~rV~ivQF 61 (382)
T PRK07413 24 VYDGEGKGKSQAALGVVLRTIGLGICEKRQTRVLLLRF 61 (382)
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCCcCCCCeEEEEEE
No 477
>PRK06128 oxidoreductase; Provisional
Probab=26.42 E-value=77 Score=32.46 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=22.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|-++|||| -+|||+. +.+.|.++|++|.+.
T Consensus 56 k~vlITGa-s~gIG~~-----~a~~l~~~G~~V~i~ 85 (300)
T PRK06128 56 RKALITGA-DSGIGRA-----TAIAFAREGADIALN 85 (300)
T ss_pred CEEEEecC-CCcHHHH-----HHHHHHHcCCEEEEE
Confidence 77999998 5788865 446677789988654
No 478
>PLN02884 6-phosphofructokinase
Probab=26.28 E-value=95 Score=34.32 Aligned_cols=59 Identities=22% Similarity=0.393 Sum_probs=41.8
Q ss_pred hhhHHHHhc--cCCCEEEeCCCCCCCchhHHHHHHHHHHHcC--CCEEEE-------------ehhHHHHHHHhcccc
Q 008476 352 AYKAAWKLL--KGADGILVPGGFGNRGVQGKILAAKYAREHR--IPYLGI-------------CLGMQVAVIEFARSV 412 (564)
Q Consensus 352 ~y~~~~~~L--~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~--iPiLGI-------------CLGmQll~ia~g~~v 412 (564)
.++++.+.| .+.|++++=||.|+ ..+...+.+++.+.+ +|+.|| |.|+.-++-.....+
T Consensus 131 ~~~~i~~~L~~~~Id~LivIGGdgS--~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdTAv~~~~~ai 206 (411)
T PLN02884 131 KTSDIVDSIEARGINMLFVLGGNGT--HAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAI 206 (411)
T ss_pred cHHHHHHHHHHcCCCEEEEECCchH--HHHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCCCHHHHHHHHHHHH
Confidence 355666666 48999999998775 344555556666656 999998 999999865544333
No 479
>PRK03094 hypothetical protein; Provisional
Probab=26.27 E-value=1.1e+02 Score=26.22 Aligned_cols=41 Identities=17% Similarity=0.294 Sum_probs=29.0
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCC
Q 008476 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG 370 (564)
Q Consensus 299 ~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpG 370 (564)
|||+=- +...|.++|+..|+++.- +..+ +.+.++|+++++|
T Consensus 3 kIaVE~-------~Ls~i~~~L~~~GYeVv~------l~~~------------------~~~~~~Da~VitG 43 (80)
T PRK03094 3 KIGVEQ-------SLTDVQQALKQKGYEVVQ------LRSE------------------QDAQGCDCCVVTG 43 (80)
T ss_pred eEEeec-------CcHHHHHHHHHCCCEEEe------cCcc------------------cccCCcCEEEEeC
Confidence 566652 456789999999999821 1111 2367899999999
No 480
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=26.20 E-value=84 Score=34.69 Aligned_cols=29 Identities=34% Similarity=0.436 Sum_probs=25.8
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 008476 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (564)
Q Consensus 4 i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k 38 (564)
|+|||| -|-+.+.|-..|.++|++|..+-
T Consensus 123 ILVTGa------tGFIGs~Lv~~Ll~~G~~V~~ld 151 (436)
T PLN02166 123 IVVTGG------AGFVGSHLVDKLIGRGDEVIVID 151 (436)
T ss_pred EEEECC------ccHHHHHHHHHHHHCCCEEEEEe
Confidence 899996 58999999999999999998864
No 481
>PRK07023 short chain dehydrogenase; Provisional
Probab=26.12 E-value=88 Score=30.56 Aligned_cols=31 Identities=29% Similarity=0.392 Sum_probs=22.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|+-|+|||| -+|||+- +.+.|.++|++|.++
T Consensus 1 ~~~vlItGa-sggiG~~-----ia~~l~~~G~~v~~~ 31 (243)
T PRK07023 1 AVRAIVTGH-SRGLGAA-----LAEQLLQPGIAVLGV 31 (243)
T ss_pred CceEEEecC-CcchHHH-----HHHHHHhCCCEEEEE
Confidence 456899998 5677654 455666789998776
No 482
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=26.10 E-value=80 Score=32.94 Aligned_cols=32 Identities=28% Similarity=0.305 Sum_probs=24.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~ 39 (564)
|-|+||||- |-+.+.|.+.|.++|++|..+-.
T Consensus 1 ~~vlVTGat------GfIG~~l~~~L~~~G~~V~~~~r 32 (343)
T TIGR01472 1 KIALITGIT------GQDGSYLAEFLLEKGYEVHGLIR 32 (343)
T ss_pred CeEEEEcCC------CcHHHHHHHHHHHCCCEEEEEec
Confidence 568999985 66667777888889999887643
No 483
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=25.84 E-value=2.9e+02 Score=30.82 Aligned_cols=65 Identities=17% Similarity=0.351 Sum_probs=39.4
Q ss_pred CcEEEEe-eCccccccC-cchHHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhhhhhhhCCCcccEEEE
Q 008476 140 VDVCVIE-LGGTIGDIE-SMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILAC 216 (564)
Q Consensus 140 ~d~~i~e-~ggtvgdie-s~pf~ea~rq~~~~~~~~~~~~~h~~~vp~~~~~~e~ktkptq~svk~l~s~Gi~pd~lv~ 216 (564)
.=-+|+| |-|.-|-+. +--|++++|++..+.| +++|-==-.-=++.+|. .-..+..|+.||++++
T Consensus 232 iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~g---iLlI~DEV~tGfGRtG~---------~~a~e~~gv~PDiv~~ 298 (464)
T PRK06938 232 PAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAG---IPLIVDEIQSGFGRTGK---------MFAFEHAGIIPDVVVL 298 (464)
T ss_pred eEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcC---CEEEEeccccCCCcCcH---------HHHHHhcCCCCCEEEe
Confidence 4457888 445545543 5789999999999975 66663211111111221 1123457999999887
No 484
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=25.83 E-value=4.4e+02 Score=27.48 Aligned_cols=33 Identities=24% Similarity=0.188 Sum_probs=21.7
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGI 397 (564)
.++||||+.+... ......++.+.+.++|+.-+
T Consensus 80 ~~vDGiIi~~~~~----~~~~~~l~~~~~~~iPvV~i 112 (330)
T PRK10355 80 RGVDVLVIIPYNG----QVLSNVIKEAKQEGIKVLAY 112 (330)
T ss_pred cCCCEEEEeCCCh----hhHHHHHHHHHHCCCeEEEE
Confidence 4899999976211 11234566777778998766
No 485
>PRK07062 short chain dehydrogenase; Provisional
Probab=25.81 E-value=76 Score=31.46 Aligned_cols=33 Identities=36% Similarity=0.476 Sum_probs=24.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (564)
|.++||||- ||||+. +.+.|.++|++|.+.-.+
T Consensus 9 k~~lItGas-~giG~~-----ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 9 RVAVVTGGS-SGIGLA-----TVELLLEAGASVAICGRD 41 (265)
T ss_pred CEEEEeCCC-chHHHH-----HHHHHHHCCCeEEEEeCC
Confidence 679999985 677764 556677889998876444
No 486
>PRK12747 short chain dehydrogenase; Provisional
Probab=25.71 E-value=78 Score=31.13 Aligned_cols=29 Identities=38% Similarity=0.507 Sum_probs=21.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~ 36 (564)
|-++||||- ||||.. +.+.|.+.|++|.+
T Consensus 5 k~~lItGas-~gIG~~-----ia~~l~~~G~~v~~ 33 (252)
T PRK12747 5 KVALVTGAS-RGIGRA-----IAKRLANDGALVAI 33 (252)
T ss_pred CEEEEeCCC-ChHHHH-----HHHHHHHCCCeEEE
Confidence 789999975 677654 45667788998765
No 487
>PRK09913 putative fructose-like phosphotransferase system subunit EIIA; Provisional
Probab=25.67 E-value=29 Score=31.90 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=37.4
Q ss_pred CCCCccc---cccCCCCCCCCcccc-hHhhHHHHhhhhcCC-CCCCeeEEcccchHH
Q 008476 69 LDLGNYE---RFMDIKLTRDNNITT-GKIYQSVIDKERKGD-YLGKTVQVVPHITDE 120 (564)
Q Consensus 69 ldlg~ye---rf~~~~~~~~~~~t~-g~iy~~vi~ker~g~-ylg~tvqviph~t~~ 120 (564)
++.-++| |++...|.+...++. ..+++.+++||..|. ++|..| .+||...+
T Consensus 13 ~~~~~~~e~i~~l~~~l~~~g~v~~~~~~~~~~~~RE~~~~t~i~~~i-AiPH~~~~ 68 (148)
T PRK09913 13 IQGNGAYSILKQLATIALQNGFITDSHQFLQTLLLREKMHSTGFGSGV-AVPHGKSA 68 (148)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhCCCcCCCce-ecCcCCch
Confidence 3444455 556666666666774 689999999999886 567778 89998765
No 488
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.57 E-value=82 Score=31.54 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=23.8
Q ss_pred EEEEEeCCcc-CCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVV-SGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~-s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|.++||||-- +|||+.++ +.|-.+|++|.+.
T Consensus 8 k~~lItGa~~s~GIG~aia-----~~la~~G~~v~~~ 39 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIA-----RSLHNAGAKLVFT 39 (257)
T ss_pred CEEEEECCCCCCCHHHHHH-----HHHHHCCCEEEEe
Confidence 6899999985 89997654 5566789887553
No 489
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=25.57 E-value=1.4e+02 Score=31.02 Aligned_cols=79 Identities=18% Similarity=0.100 Sum_probs=53.3
Q ss_pred HHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-----hhHHHHHHHHHHH
Q 008476 315 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-----VQGKILAAKYARE 389 (564)
Q Consensus 315 SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~~L~~~DGIllpGGfG~r~-----~eg~i~~ir~a~e 389 (564)
++++..+..|++..-.+++.|-+-.+. .+..+.+.+++||++.||--.|- .....++++....
T Consensus 71 ~y~rife~~gv~~v~ildir~R~~a~~------------s~~~~~v~~a~gIfftGGDQ~ri~~~lkdTpl~~~ir~r~r 138 (293)
T COG4242 71 NYIRIFEMMGVEEVQILDIRNREDASS------------SDIVAKVENATGIFFTGGDQLRIIGSLKDTPLMAAIRQRVR 138 (293)
T ss_pred chhhHHHHhccceeEEEeeecccccch------------HHHHHHHHhCceEEEecCcceeeeeeccCCHHHHHHHHHHh
Confidence 335566777877655556655432221 12346788999999999854442 2456677877777
Q ss_pred cCCCEEEEehhHHHHH
Q 008476 390 HRIPYLGICLGMQVAV 405 (564)
Q Consensus 390 ~~iPiLGICLGmQll~ 405 (564)
+++-+-|.--|.-+|.
T Consensus 139 ~G~avgGTSAGAavM~ 154 (293)
T COG4242 139 RGIAVGGTSAGAAVMS 154 (293)
T ss_pred cCceecccccchhhcC
Confidence 7899999999988874
No 490
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=25.55 E-value=88 Score=32.18 Aligned_cols=30 Identities=43% Similarity=0.398 Sum_probs=24.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|-|+|||| -|-+.+.+.+.|.++|++|...
T Consensus 6 ~~vlVTGa------tG~iG~~l~~~L~~~g~~V~~~ 35 (322)
T PLN02986 6 KLVCVTGA------SGYIASWIVKLLLLRGYTVKAT 35 (322)
T ss_pred CEEEEECC------CcHHHHHHHHHHHHCCCEEEEE
Confidence 67999997 4777888888888899998754
No 491
>TIGR01419 nitro_reg_IIA PTS IIA-like nitrogen-regulatory protein PtsN. Members of this family are found in Proteobacteria, Chlamydia, and the spirochete Treponema pallidum.
Probab=25.52 E-value=27 Score=31.86 Aligned_cols=43 Identities=14% Similarity=0.431 Sum_probs=29.7
Q ss_pred ccCCCCCCCCcccchHhhHHHHhhhhcCC-CCCCeeEEcccchHH
Q 008476 77 FMDIKLTRDNNITTGKIYQSVIDKERKGD-YLGKTVQVVPHITDE 120 (564)
Q Consensus 77 f~~~~~~~~~~~t~g~iy~~vi~ker~g~-ylg~tvqviph~t~~ 120 (564)
++...|.+....+...+++.+++||+.|- ++|..| .+||...+
T Consensus 26 ~~~~~l~~~~~~~~~~~~~~i~~RE~~~~t~i~~~i-AiPH~~~~ 69 (145)
T TIGR01419 26 IISLLAARELSLPEQDVFECLLAREKLGSTGVGNGI-AIPHGRLS 69 (145)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHhcccCCCCCCce-eccccCcc
Confidence 33333433332234468999999999998 468888 99998765
No 492
>PRK06196 oxidoreductase; Provisional
Probab=25.40 E-value=74 Score=32.87 Aligned_cols=31 Identities=42% Similarity=0.514 Sum_probs=23.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k 38 (564)
|-|+||||- +|||+-++ +.|.++|++|.+.=
T Consensus 27 k~vlITGas-ggIG~~~a-----~~L~~~G~~Vv~~~ 57 (315)
T PRK06196 27 KTAIVTGGY-SGLGLETT-----RALAQAGAHVIVPA 57 (315)
T ss_pred CEEEEeCCC-chHHHHHH-----HHHHHCCCEEEEEe
Confidence 679999986 78876554 45667899887753
No 493
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=25.37 E-value=60 Score=33.10 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=23.5
Q ss_pred cchHHHHHHHHHHHHHCCCeeEEeeec
Q 008476 14 LGKGVTASSIGVLLKACGLRVTCIKID 40 (564)
Q Consensus 14 ~gkg~~~~s~g~ll~~~g~~v~~~k~d 40 (564)
+|=||+.+|++.-|..+|++|+++-=+
T Consensus 5 IGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 5 IGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp ECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred ECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 455899999999999999999998655
No 494
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=25.37 E-value=58 Score=33.52 Aligned_cols=102 Identities=17% Similarity=0.140 Sum_probs=0.0
Q ss_pred cchHHHHHHHhhhcCCCCceEEEEEeccCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccccCCchhhhHHHH
Q 008476 279 PLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK 358 (564)
Q Consensus 279 ~~~~~w~~~~~~~~~~~~~~~IavVGkY~~~~Day~SIi~aL~~aG~~v~v~v~i~wi~s~~le~~~~~~~p~~y~~~~~ 358 (564)
..+..+-++..++...-+ +|+++ |.....+.....+.++...-...+++....+++.+--..... .
T Consensus 115 ~~~~~~l~l~~~l~P~~k--~igvl--~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~----------~ 180 (294)
T PF04392_consen 115 PPIEKQLELIKKLFPDAK--RIGVL--YDPSEPNSVAQIEQLRKAAKKLGIELVEIPVPSSEDLEQALE----------A 180 (294)
T ss_dssp --HHHHHHHHHHHSTT----EEEEE--EETT-HHHHHHHHHHHHHHHHTT-EEEEEEESSGGGHHHHHH----------H
T ss_pred cCHHHHHHHHHHhCCCCC--EEEEE--ecCCCccHHHHHHHHHHHHHHcCCEEEEEecCcHhHHHHHHH----------H
Q ss_pred hccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEE
Q 008476 359 LLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLG 396 (564)
Q Consensus 359 ~L~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLG 396 (564)
...+.|+++++....-...... .++.+.+.++|++|
T Consensus 181 l~~~~da~~~~~~~~~~~~~~~--i~~~~~~~~iPv~~ 216 (294)
T PF04392_consen 181 LAEKVDALYLLPDNLVDSNFEA--ILQLANEAKIPVFG 216 (294)
T ss_dssp HCTT-SEEEE-S-HHHHHTHHH--HHHHCCCTT--EEE
T ss_pred hhccCCEEEEECCcchHhHHHH--HHHHHHhcCCCEEE
No 495
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=25.29 E-value=1.4e+02 Score=27.71 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=29.5
Q ss_pred CCCcEEEEeeCccccccCc-----chHHHHHHHhhhhcCCCCEEEEEeeeeee
Q 008476 138 GPVDVCVIELGGTIGDIES-----MPFIEALGQFSYRVGPGNFCLIHVSLVPV 185 (564)
Q Consensus 138 ~~~d~~i~e~ggtvgdies-----~pf~ea~rq~~~~~~~~~~~~~h~~~vp~ 185 (564)
.+||+|||++|+- |+.. .-|.+.+++|-.++...++-.|-+|.-|.
T Consensus 66 ~~~d~vii~~G~N--D~~~~~~~~~~~~~~~~~~i~~i~~~~~~vil~~~~~~ 116 (185)
T cd01832 66 LRPDLVTLLAGGN--DILRPGTDPDTYRADLEEAVRRLRAAGARVVVFTIPDP 116 (185)
T ss_pred cCCCEEEEecccc--ccccCCCCHHHHHHHHHHHHHHHHhCCCEEEEecCCCc
Confidence 4899999999953 5532 22677777777777544554444554443
No 496
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=25.29 E-value=3.7e+02 Score=26.54 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=20.2
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 008476 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (564)
Q Consensus 361 ~~~DGIllpGGfG~r~~eg~i~~ir~a~e~~iPiLGI 397 (564)
.++||||+.+... .... .++.++++++|+.-+
T Consensus 56 ~~vdgiI~~~~~~----~~~~-~~~~~~~~giPvV~~ 87 (268)
T cd06306 56 WGADAILLGAVSP----DGLN-EILQQVAASIPVIAL 87 (268)
T ss_pred cCCCEEEEcCCCh----hhHH-HHHHHHHCCCCEEEe
Confidence 5899999876321 1111 356677789997643
No 497
>PRK05884 short chain dehydrogenase; Provisional
Probab=25.22 E-value=75 Score=31.04 Aligned_cols=30 Identities=37% Similarity=0.596 Sum_probs=21.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|| ++||||- +|||+.+ .+.|..+|++|.+.
T Consensus 1 m~-vlItGas-~giG~~i-----a~~l~~~g~~v~~~ 30 (223)
T PRK05884 1 VE-VLVTGGD-TDLGRTI-----AEGFRNDGHKVTLV 30 (223)
T ss_pred Ce-EEEEeCC-chHHHHH-----HHHHHHCCCEEEEE
Confidence 45 7899876 6777654 45566789998775
No 498
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=25.17 E-value=92 Score=32.12 Aligned_cols=30 Identities=43% Similarity=0.540 Sum_probs=22.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 1 ~k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|| |+||||. |-+.+.+.+.|.++|++|.++
T Consensus 1 m~-vlVtGat------G~iG~~l~~~L~~~g~~V~~~ 30 (338)
T PRK10675 1 MR-VLVTGGS------GYIGSHTCVQLLQNGHDVVIL 30 (338)
T ss_pred Ce-EEEECCC------ChHHHHHHHHHHHCCCeEEEE
Confidence 44 7899976 555666667777889999865
No 499
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.14 E-value=87 Score=30.31 Aligned_cols=32 Identities=34% Similarity=0.437 Sum_probs=23.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~k~ 39 (564)
|-++|||| -++||+.++ +.|.++|++|...-.
T Consensus 6 k~~lVtGa-s~~iG~~ia-----~~l~~~G~~v~~~~r 37 (235)
T PRK06550 6 KTVLITGA-ASGIGLAQA-----RAFLAQGAQVYGVDK 37 (235)
T ss_pred CEEEEcCC-CchHHHHHH-----HHHHHCCCEEEEEeC
Confidence 67899988 467776544 566778999887643
No 500
>PRK08589 short chain dehydrogenase; Validated
Probab=25.11 E-value=76 Score=31.88 Aligned_cols=30 Identities=27% Similarity=0.506 Sum_probs=22.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 008476 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (564)
Q Consensus 2 k~i~vtggv~s~~gkg~~~~s~g~ll~~~g~~v~~~ 37 (564)
|.++||||- +|||+. +.+.|.++|++|.+.
T Consensus 7 k~vlItGas-~gIG~a-----ia~~l~~~G~~vi~~ 36 (272)
T PRK08589 7 KVAVITGAS-TGIGQA-----SAIALAQEGAYVLAV 36 (272)
T ss_pred CEEEEECCC-chHHHH-----HHHHHHHCCCEEEEE
Confidence 679999985 677754 455566789998764
Done!