Query 008477
Match_columns 564
No_of_seqs 539 out of 4681
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 04:29:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008477.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008477hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hve_A Gigaxonin; ubiquitin, c 99.9 4.4E-25 1.5E-29 216.3 13.6 188 328-554 17-215 (256)
2 3htm_A Speckle-type POZ protei 99.9 3.8E-25 1.3E-29 203.3 12.0 147 330-517 22-169 (172)
3 4eoz_A Speckle-type POZ protei 99.9 6.2E-25 2.1E-29 195.9 5.7 127 330-494 13-139 (145)
4 3i3n_A Kelch-like protein 11; 99.9 1.2E-24 4.2E-29 215.8 4.3 184 329-553 19-222 (279)
5 3hqi_A Speckle-type POZ protei 99.9 3.2E-23 1.1E-27 209.1 11.6 146 331-517 163-309 (312)
6 2vkp_A BTB/POZ domain-containi 99.9 3.1E-22 1E-26 169.1 11.3 104 336-475 2-109 (109)
7 2if5_A Zinc finger and BTB dom 99.9 2E-22 6.7E-27 173.4 10.0 107 330-471 13-119 (120)
8 1r29_A B-cell lymphoma 6 prote 99.9 5.7E-22 1.9E-26 172.3 10.8 109 329-473 16-125 (127)
9 4gpm_A Engineered protein OR26 99.9 1.4E-21 4.8E-26 178.7 13.3 129 6-144 17-149 (169)
10 2ppi_A Gigaxonin; BTB domain, 99.9 5.3E-22 1.8E-26 176.1 9.3 111 328-471 33-143 (144)
11 2z8h_A Transcription regulator 99.9 2E-22 6.9E-27 177.8 6.3 114 329-482 23-137 (138)
12 1buo_A POZ domain, protein (pr 99.9 7E-22 2.4E-26 170.2 9.5 106 330-475 16-121 (121)
13 3b84_A Zinc finger and BTB dom 99.9 3.3E-22 1.1E-26 171.7 7.4 105 330-473 12-116 (119)
14 2vpk_A Myoneurin; transcriptio 99.8 1.4E-21 5E-26 166.9 9.3 104 330-472 10-115 (116)
15 2yy9_A Zinc finger and BTB dom 99.8 5.4E-22 1.8E-26 174.2 6.0 108 329-475 12-119 (135)
16 2q81_A MIZ-1 protein; BTB/POZ 99.8 1.7E-21 5.8E-26 167.2 7.5 103 330-472 15-117 (119)
17 3ga1_A Nucleus accumbens-assoc 99.8 3E-21 1E-25 168.1 4.5 107 329-474 20-127 (129)
18 2ihc_A Transcription regulator 99.8 1.1E-21 3.7E-26 169.7 1.5 106 330-472 17-123 (124)
19 3ohu_A Transcription regulator 99.8 1.5E-21 5.1E-26 169.2 2.1 106 329-471 19-125 (125)
20 3htm_A Speckle-type POZ protei 99.8 6.6E-20 2.3E-24 168.1 11.6 124 168-291 32-165 (172)
21 3hve_A Gigaxonin; ubiquitin, c 99.8 7.6E-20 2.6E-24 179.0 9.7 137 167-303 28-178 (256)
22 3c5r_A BARD-1, BRCA1-associate 99.8 3.8E-19 1.3E-23 156.3 11.6 119 15-144 1-122 (137)
23 1d9s_A Cyclin-dependent kinase 99.8 1.5E-19 5.2E-24 158.7 8.8 119 15-144 2-124 (136)
24 3fkc_A Transcriptional regulat 99.8 1.4E-19 4.6E-24 154.4 7.8 98 329-465 18-115 (116)
25 2y1l_E Darpin-8.4; hydrolase-i 99.8 9.9E-19 3.4E-23 159.5 13.2 128 7-144 28-159 (169)
26 3i3n_A Kelch-like protein 11; 99.8 1.8E-19 6.3E-24 178.5 8.3 138 168-305 30-188 (279)
27 4gpm_A Engineered protein OR26 99.8 9.2E-19 3.1E-23 159.9 12.2 110 7-124 51-164 (169)
28 1awc_B Protein (GA binding pro 99.8 1.3E-18 4.5E-23 155.8 12.5 128 6-144 15-146 (153)
29 3m5b_A Zinc finger and BTB dom 99.8 1.2E-19 4.2E-24 155.1 5.2 93 337-473 25-117 (119)
30 3v31_A Ankyrin repeat family A 99.8 1.4E-18 4.9E-23 157.9 12.7 129 6-144 16-148 (167)
31 3f6q_A Integrin-linked protein 99.8 1.9E-18 6.4E-23 159.2 13.4 131 7-147 19-154 (179)
32 4b93_B Ankyrin repeat domain-c 99.8 1.1E-18 3.9E-23 171.9 12.4 133 8-142 68-229 (269)
33 3twr_A Tankyrase-2; ankyrin re 99.8 4.2E-18 1.4E-22 154.4 14.6 125 7-141 22-151 (165)
34 3v30_A DNA-binding protein rfx 99.8 2.7E-18 9.2E-23 156.9 13.2 129 6-144 15-148 (172)
35 1ihb_A P18-INK4C(INK6), cyclin 99.8 2.4E-18 8.1E-23 155.4 12.3 128 6-144 18-150 (162)
36 2rfm_A Putative ankyrin repeat 99.8 1.9E-18 6.5E-23 161.0 11.8 128 7-144 49-180 (192)
37 4b93_B Ankyrin repeat domain-c 99.7 2.1E-18 7.1E-23 170.0 10.0 110 33-144 86-198 (269)
38 3hqi_A Speckle-type POZ protei 99.7 4.5E-18 1.5E-22 171.3 11.9 124 168-291 172-305 (312)
39 1bd8_A P19INK4D CDK4/6 inhibit 99.7 8.6E-18 2.9E-22 150.8 12.1 125 8-144 17-146 (156)
40 3aaa_C Myotrophin, protein V-1 99.7 4.7E-18 1.6E-22 146.3 9.8 112 22-143 4-118 (123)
41 2vkp_A BTB/POZ domain-containi 99.7 9.3E-18 3.2E-22 141.4 10.4 87 167-254 5-95 (109)
42 4eoz_A Speckle-type POZ protei 99.7 2.6E-18 9E-23 152.7 6.7 112 168-279 23-144 (145)
43 3t8k_A Uncharacterized protein 99.7 3.6E-18 1.2E-22 158.5 7.5 119 17-145 29-168 (186)
44 2rfa_A Transient receptor pote 99.7 2.1E-17 7.3E-22 158.4 13.0 130 6-145 16-168 (232)
45 2jab_A H10-2-G3; HER2, darpin, 99.7 6.7E-18 2.3E-22 148.1 8.3 113 22-144 11-126 (136)
46 1yyh_A HN1;, notch 1, ankyrin 99.7 2.1E-17 7.2E-22 161.0 11.6 104 38-143 129-235 (253)
47 2if5_A Zinc finger and BTB dom 99.7 1.6E-17 5.3E-22 142.7 9.4 93 168-260 23-115 (120)
48 1ikn_D Protein (I-kappa-B-alph 99.7 1.1E-16 3.7E-21 154.1 16.3 128 7-144 59-197 (236)
49 2rfm_A Putative ankyrin repeat 99.7 1E-17 3.6E-22 155.9 8.7 118 17-144 27-147 (192)
50 1bi7_B P16INK4A, MTS1, multipl 99.7 1.9E-17 6.5E-22 148.9 10.2 110 15-135 35-148 (156)
51 2f8y_A Notch homolog 1, transl 99.7 5.7E-17 2E-21 154.3 13.9 169 8-202 6-180 (223)
52 3aji_A 26S proteasome non-ATPa 99.7 4.1E-17 1.4E-21 156.2 12.9 128 7-144 54-185 (231)
53 3aji_A 26S proteasome non-ATPa 99.7 4.3E-17 1.5E-21 156.1 12.9 128 7-144 20-152 (231)
54 1r29_A B-cell lymphoma 6 prote 99.7 3.5E-17 1.2E-21 141.9 10.8 90 168-258 27-117 (127)
55 2dzn_A Probable 26S proteasome 99.7 7.2E-17 2.5E-21 154.1 14.0 113 21-143 68-186 (228)
56 3hra_A Ankyrin repeat family p 99.7 5.8E-17 2E-21 151.7 12.2 127 7-143 19-152 (201)
57 2vge_A RELA-associated inhibit 99.7 6.4E-17 2.2E-21 155.4 12.7 123 15-143 8-135 (229)
58 3hra_A Ankyrin repeat family p 99.7 1.1E-16 3.7E-21 149.8 13.8 119 15-143 62-190 (201)
59 2xai_A ASB-9, ankyrin repeat a 99.7 5.9E-17 2E-21 158.7 12.3 167 7-201 17-187 (261)
60 1s70_B 130 kDa myosin-binding 99.7 8.7E-17 3E-21 160.3 13.8 133 7-149 87-283 (299)
61 3b7b_A Euchromatic histone-lys 99.7 9.9E-17 3.4E-21 154.2 13.6 127 7-143 58-189 (237)
62 1s70_B 130 kDa myosin-binding 99.7 6.6E-17 2.2E-21 161.2 12.6 128 7-144 54-245 (299)
63 1n0q_A 3ANK, 3 ankyrin repeats 99.7 7E-17 2.4E-21 131.7 10.3 90 24-121 1-93 (93)
64 1yyh_A HN1;, notch 1, ankyrin 99.7 5.5E-17 1.9E-21 158.1 11.4 119 15-143 80-202 (253)
65 1d9s_A Cyclin-dependent kinase 99.7 6.7E-17 2.3E-21 141.7 10.8 107 6-121 25-136 (136)
66 2f8y_A Notch homolog 1, transl 99.7 1.1E-16 3.9E-21 152.3 13.3 127 7-143 39-170 (223)
67 1ikn_D Protein (I-kappa-B-alph 99.7 5E-17 1.7E-21 156.4 10.9 121 15-145 35-165 (236)
68 1k1a_A B-cell lymphoma 3-encod 99.7 1.1E-16 3.8E-21 154.0 13.3 104 38-143 121-228 (241)
69 1n0r_A 4ANK, 4 ankyrin repeats 99.7 7.1E-17 2.4E-21 138.7 10.7 111 24-144 1-114 (126)
70 2rfa_A Transient receptor pote 99.7 7.4E-17 2.5E-21 154.7 11.9 128 7-144 51-210 (232)
71 1oy3_D Transcription factor in 99.7 6.7E-17 2.3E-21 159.4 11.7 119 15-143 148-270 (282)
72 2vge_A RELA-associated inhibit 99.7 4.2E-17 1.4E-21 156.6 9.9 126 7-142 35-167 (229)
73 3v31_A Ankyrin repeat family A 99.7 9.4E-17 3.2E-21 145.8 11.2 112 24-145 2-116 (167)
74 1oy3_D Transcription factor in 99.7 7.4E-17 2.5E-21 159.1 11.3 129 7-145 59-239 (282)
75 1bi7_B P16INK4A, MTS1, multipl 99.7 2.3E-17 7.8E-22 148.4 6.8 116 18-144 5-124 (156)
76 2etb_A Transient receptor pote 99.7 2.5E-17 8.7E-22 160.6 7.6 114 21-144 86-234 (256)
77 3b7b_A Euchromatic histone-lys 99.7 2.3E-16 7.7E-21 151.7 14.0 117 17-143 3-123 (237)
78 2jab_A H10-2-G3; HER2, darpin, 99.7 1.5E-16 5.3E-21 139.4 11.8 106 6-119 27-136 (136)
79 2ppi_A Gigaxonin; BTB domain, 99.7 5.9E-17 2E-21 143.5 9.0 94 167-260 44-139 (144)
80 3kea_A K1L; tropism, ANK repea 99.7 6.9E-17 2.4E-21 160.5 10.2 167 6-201 12-182 (285)
81 1ycs_B 53BP2, P53BP2; ankyrin 99.7 4.2E-17 1.4E-21 157.6 8.3 126 7-143 19-151 (239)
82 3jxi_A Vanilloid receptor-rela 99.7 4.4E-17 1.5E-21 159.2 8.1 119 16-144 84-238 (260)
83 4hbd_A KN motif and ankyrin re 99.7 1.1E-16 3.6E-21 158.4 10.5 118 17-144 137-263 (276)
84 1sw6_A Regulatory protein SWI6 99.7 1.9E-16 6.5E-21 160.5 12.5 96 15-118 120-227 (327)
85 3kea_A K1L; tropism, ANK repea 99.7 5.8E-17 2E-21 161.0 8.1 126 6-144 44-174 (285)
86 2b0o_E UPLC1; arfgap, structur 99.7 9.5E-17 3.2E-21 160.7 9.4 122 7-144 165-299 (301)
87 3ehr_A Osteoclast-stimulating 99.7 7.8E-17 2.7E-21 153.7 8.4 113 22-144 70-186 (222)
88 2dzn_A Probable 26S proteasome 99.7 2.3E-16 7.9E-21 150.6 11.6 129 6-144 15-153 (228)
89 3b84_A Zinc finger and BTB dom 99.7 7.4E-17 2.5E-21 138.1 7.2 88 168-259 22-109 (119)
90 3deo_A Signal recognition part 99.7 3.4E-17 1.2E-21 151.4 5.6 111 22-143 41-155 (183)
91 2etb_A Transient receptor pote 99.7 6.3E-17 2.1E-21 157.8 7.7 125 8-142 21-183 (256)
92 2xai_A ASB-9, ankyrin repeat a 99.7 3.8E-16 1.3E-20 152.9 13.0 126 7-144 50-179 (261)
93 3d9h_A CDNA FLJ77766, highly s 99.7 2.5E-16 8.6E-21 156.4 11.9 124 9-143 75-202 (285)
94 3ljn_A Hypothetical protein; a 99.7 2.6E-16 8.8E-21 161.8 12.3 125 7-143 34-185 (364)
95 1n11_A Ankyrin; clathrin, BAND 99.7 3.4E-16 1.2E-20 164.9 12.7 125 9-143 261-389 (437)
96 1n11_A Ankyrin; clathrin, BAND 99.7 2.1E-16 7E-21 166.6 10.7 120 15-144 4-126 (437)
97 2y1l_E Darpin-8.4; hydrolase-i 99.7 6.2E-16 2.1E-20 140.8 12.4 108 35-144 16-126 (169)
98 2z8h_A Transcription regulator 99.6 1.8E-16 6E-21 139.5 8.2 99 168-290 34-133 (138)
99 3v30_A DNA-binding protein rfx 99.6 3.1E-16 1.1E-20 143.0 10.2 119 6-134 49-171 (172)
100 1k1a_A B-cell lymphoma 3-encod 99.6 5.4E-16 1.8E-20 149.2 12.4 120 15-143 36-162 (241)
101 2pnn_A Transient receptor pote 99.6 2.4E-16 8.1E-21 155.3 9.8 115 20-144 96-246 (273)
102 3d9h_A CDNA FLJ77766, highly s 99.6 5.2E-16 1.8E-20 154.1 12.3 118 17-145 51-171 (285)
103 2vpk_A Myoneurin; transcriptio 99.6 2.6E-16 9E-21 134.1 8.7 88 168-259 20-109 (116)
104 2yy9_A Zinc finger and BTB dom 99.6 1.8E-16 6.2E-21 138.8 7.6 98 168-291 23-120 (135)
105 1buo_A POZ domain, protein (pr 99.6 3.4E-16 1.2E-20 134.4 9.1 89 168-261 26-114 (121)
106 3utm_A Tankyrase-1; tankyrase, 99.6 8.9E-16 3E-20 156.1 13.6 111 7-125 38-153 (351)
107 2l6b_A NR1C; ankyrin, consensu 99.6 1.3E-16 4.6E-21 135.3 6.1 106 20-135 4-112 (115)
108 1wdy_A 2-5A-dependent ribonucl 99.6 9.3E-16 3.2E-20 151.0 13.0 131 6-144 18-161 (285)
109 1n0r_A 4ANK, 4 ankyrin repeats 99.6 1.3E-15 4.6E-20 130.6 12.0 108 6-121 15-126 (126)
110 1ycs_B 53BP2, P53BP2; ankyrin 99.6 4.4E-16 1.5E-20 150.4 9.5 113 6-126 50-169 (239)
111 1ihb_A P18-INK4C(INK6), cyclin 99.6 1.1E-15 3.8E-20 137.7 11.5 108 6-121 50-162 (162)
112 3utm_A Tankyrase-1; tankyrase, 99.6 1.6E-15 5.4E-20 154.2 13.7 117 19-145 18-138 (351)
113 3twr_A Tankyrase-2; ankyrin re 99.6 1E-15 3.5E-20 138.5 11.0 107 6-120 55-164 (165)
114 3ljn_A Hypothetical protein; a 99.6 2.9E-16 9.8E-21 161.4 8.1 114 21-144 134-257 (364)
115 3aaa_C Myotrophin, protein V-1 99.6 1.4E-15 4.8E-20 130.7 11.1 102 6-115 20-122 (123)
116 2pnn_A Transient receptor pote 99.6 3.4E-16 1.2E-20 154.2 8.2 120 15-144 40-197 (273)
117 4hbd_A KN motif and ankyrin re 99.6 3.9E-16 1.3E-20 154.3 8.6 158 18-200 104-270 (276)
118 3jxi_A Vanilloid receptor-rela 99.6 3.1E-16 1.1E-20 153.1 7.6 119 15-143 32-188 (260)
119 3ui2_A Signal recognition part 99.6 3E-16 1E-20 152.1 7.2 108 23-141 43-154 (244)
120 3f6q_A Integrin-linked protein 99.6 1.9E-15 6.5E-20 138.9 11.8 113 6-126 52-168 (179)
121 3eu9_A Huntingtin-interacting 99.6 5.2E-15 1.8E-19 141.8 15.2 128 6-143 22-154 (240)
122 3fkc_A Transcriptional regulat 99.6 5.6E-16 1.9E-20 131.8 7.4 85 168-257 29-114 (116)
123 3ohu_A Transcription regulator 99.6 1.1E-16 3.9E-21 138.3 3.1 86 168-255 30-116 (125)
124 1wdy_A 2-5A-dependent ribonucl 99.6 3.2E-15 1.1E-19 147.2 13.9 128 6-143 52-194 (285)
125 2q81_A MIZ-1 protein; BTB/POZ 99.6 4.4E-16 1.5E-20 133.3 6.3 88 168-260 25-112 (119)
126 3m5b_A Zinc finger and BTB dom 99.6 9.2E-16 3.1E-20 130.9 7.5 86 167-261 27-112 (119)
127 2ihc_A Transcription regulator 99.6 1.6E-16 5.6E-21 137.0 2.8 88 168-257 27-115 (124)
128 3lvq_E ARF-GAP with SH3 domain 99.6 1.6E-15 5.5E-20 162.7 10.9 118 7-140 146-276 (497)
129 1bd8_A P19INK4D CDK4/6 inhibit 99.6 4.9E-15 1.7E-19 132.6 11.8 104 6-118 48-155 (156)
130 1awc_B Protein (GA binding pro 99.6 5.1E-15 1.7E-19 132.3 11.8 102 6-115 47-152 (153)
131 3c5r_A BARD-1, BRCA1-associate 99.6 1.6E-15 5.5E-20 132.9 7.4 104 7-118 24-131 (137)
132 1dcq_A PYK2-associated protein 99.6 5.7E-15 2E-19 146.0 11.9 106 9-122 146-264 (278)
133 3eu9_A Huntingtin-interacting 99.6 5.4E-15 1.8E-19 141.7 11.0 128 7-144 56-190 (240)
134 2fo1_E LIN-12 protein; beta-ba 99.6 3.6E-15 1.2E-19 153.9 10.4 120 16-145 226-360 (373)
135 3ga1_A Nucleus accumbens-assoc 99.6 1.4E-15 4.7E-20 132.2 5.9 82 168-253 31-113 (129)
136 2fo1_E LIN-12 protein; beta-ba 99.6 4E-15 1.4E-19 153.6 10.5 165 15-202 156-335 (373)
137 3ehr_A Osteoclast-stimulating 99.6 3.1E-15 1.1E-19 142.5 8.6 112 7-126 87-203 (222)
138 4g8k_A 2-5A-dependent ribonucl 99.6 2.3E-14 7.9E-19 145.5 15.2 121 15-145 115-253 (337)
139 3jue_A Arfgap with coiled-coil 99.6 1.1E-14 3.7E-19 149.4 11.6 114 21-144 195-314 (368)
140 3deo_A Signal recognition part 99.6 1.9E-14 6.6E-19 132.7 12.0 114 6-144 57-172 (183)
141 3t8k_A Uncharacterized protein 99.5 2.8E-15 9.6E-20 139.0 5.4 108 8-123 57-181 (186)
142 3jue_A Arfgap with coiled-coil 99.5 9.1E-15 3.1E-19 150.0 9.4 114 18-139 226-345 (368)
143 3ui2_A Signal recognition part 99.5 2.5E-14 8.7E-19 138.5 11.8 114 6-144 58-173 (244)
144 3lvq_E ARF-GAP with SH3 domain 99.5 2E-14 6.9E-19 154.1 11.2 108 35-144 134-253 (497)
145 2zgd_A 3 repeat synthetic anky 99.5 1.8E-14 6.2E-19 121.3 8.0 90 18-115 17-109 (110)
146 1dcq_A PYK2-associated protein 99.5 5.5E-14 1.9E-18 138.9 11.7 108 35-144 132-251 (278)
147 4g8k_A 2-5A-dependent ribonucl 99.5 9.2E-14 3.1E-18 141.0 13.1 129 8-144 40-181 (337)
148 2b0o_E UPLC1; arfgap, structur 99.5 4.6E-14 1.6E-18 141.2 10.6 108 35-144 153-272 (301)
149 1n0q_A 3ANK, 3 ankyrin repeats 99.5 7.3E-14 2.5E-18 113.5 9.0 78 6-91 15-93 (93)
150 2l6b_A NR1C; ankyrin, consensu 99.5 8.3E-14 2.8E-18 117.9 7.7 89 6-102 22-111 (115)
151 1sw6_A Regulatory protein SWI6 99.4 2.2E-13 7.7E-18 137.8 4.9 128 11-140 37-210 (327)
152 2ast_A S-phase kinase-associat 99.3 4.6E-12 1.6E-16 113.6 10.5 135 345-492 3-143 (159)
153 2aja_A Ankyrin repeat family p 99.3 2.4E-13 8.2E-18 139.9 -1.3 104 38-143 97-211 (376)
154 2aja_A Ankyrin repeat family p 99.2 3.5E-13 1.2E-17 138.6 -3.1 99 36-144 131-238 (376)
155 2zgd_A 3 repeat synthetic anky 99.2 5.2E-11 1.8E-15 99.8 8.0 71 7-85 38-109 (110)
156 4ajy_C Transcription elongatio 99.1 4E-10 1.4E-14 91.9 8.2 85 345-460 4-97 (97)
157 1fs1_B SKP1, cyclin A/CDK2-ass 99.0 1.4E-09 4.7E-14 95.2 9.0 125 345-488 4-134 (141)
158 2p1m_A SKP1-like protein 1A; F 98.8 8.2E-10 2.8E-14 98.8 3.0 131 345-492 6-142 (160)
159 4ajy_C Transcription elongatio 98.8 6.1E-09 2.1E-13 84.8 7.4 78 173-251 4-95 (97)
160 2ast_A S-phase kinase-associat 98.7 3.1E-08 1E-12 88.6 7.9 60 173-233 3-65 (159)
161 3v7d_A Suppressor of kinetocho 98.3 2.9E-06 9.8E-11 76.2 10.8 134 344-489 8-147 (169)
162 2fnj_C Transcription elongatio 98.3 1.4E-06 4.9E-11 70.4 6.4 93 345-460 3-96 (96)
163 1hv2_A Elongin C, ELC1; protei 98.2 3.3E-06 1.1E-10 68.6 7.0 93 345-460 6-99 (99)
164 3drz_A BTB/POZ domain-containi 98.2 1.3E-05 4.5E-10 66.1 10.7 99 344-473 7-106 (107)
165 1fs1_B SKP1, cyclin A/CDK2-ass 98.0 1.3E-05 4.6E-10 69.6 7.3 112 173-290 4-121 (141)
166 1vcb_B Protein (elongin C); tu 97.7 4.4E-05 1.5E-09 63.3 5.9 94 344-460 18-112 (112)
167 2p1m_A SKP1-like protein 1A; F 97.6 1.9E-05 6.4E-10 70.3 2.2 114 172-290 5-125 (160)
168 1hv2_A Elongin C, ELC1; protei 97.5 0.00014 4.6E-09 59.0 6.4 78 172-251 5-97 (99)
169 2fnj_C Transcription elongatio 97.5 0.00013 4.3E-09 58.8 5.9 78 173-251 3-94 (96)
170 3drx_A BTB/POZ domain-containi 97.1 0.0016 5.5E-08 59.2 9.0 100 344-474 13-113 (202)
171 3drz_A BTB/POZ domain-containi 97.0 0.0035 1.2E-07 51.4 9.2 67 172-239 7-78 (107)
172 1vcb_B Protein (elongin C); tu 96.6 0.0025 8.6E-08 52.6 5.6 79 172-251 18-110 (112)
173 3v7d_A Suppressor of kinetocho 96.3 0.012 4.2E-07 52.4 8.5 115 172-288 8-131 (169)
174 2eqx_A Kelch repeat and BTB do 94.6 0.015 5.2E-07 47.3 2.5 45 261-305 11-57 (105)
175 1s1g_A Potassium voltage-gated 94.5 0.14 4.8E-06 42.8 8.2 96 344-473 14-111 (124)
176 3kvt_A Potassium channel prote 94.3 0.032 1.1E-06 46.1 3.8 87 344-464 6-93 (115)
177 2eqx_A Kelch repeat and BTB do 93.8 0.011 3.6E-07 48.3 -0.2 72 479-553 9-88 (105)
178 3drx_A BTB/POZ domain-containi 93.4 0.16 5.3E-06 46.1 6.8 67 172-239 13-84 (202)
179 1t1d_A Protein (potassium chan 93.4 0.071 2.4E-06 42.8 4.1 86 345-464 3-90 (100)
180 2nz0_B Potassium voltage-gated 92.2 0.19 6.6E-06 42.9 5.5 87 343-463 35-121 (140)
181 1nn7_A Potassium channel KV4.2 90.0 0.23 7.7E-06 40.2 3.6 85 345-463 2-86 (105)
182 3kvt_A Potassium channel prote 88.0 0.47 1.6E-05 39.0 4.1 79 172-251 6-87 (115)
183 1s1g_A Potassium voltage-gated 82.9 1.3 4.5E-05 36.9 4.5 77 172-252 14-95 (124)
184 2nz0_B Potassium voltage-gated 81.5 1.7 5.8E-05 37.0 4.8 76 172-251 36-116 (140)
185 1t1d_A Protein (potassium chan 79.8 1.5 5E-05 35.0 3.6 78 173-251 3-84 (100)
186 1nn7_A Potassium channel KV4.2 78.5 2.5 8.7E-05 33.9 4.7 78 173-251 2-81 (105)
187 2r9r_B Paddle chimera voltage 51.8 14 0.00048 38.7 5.1 88 344-464 53-141 (514)
188 1gp8_A Protein (scaffolding pr 24.8 55 0.0019 20.6 2.5 20 35-54 15-34 (40)
No 1
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.92 E-value=4.4e-25 Score=216.26 Aligned_cols=188 Identities=15% Similarity=0.175 Sum_probs=143.6
Q ss_pred chhhhhcccccCCCCccEEEEeCCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHh
Q 008477 328 SSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMI 407 (564)
Q Consensus 328 ~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l 407 (564)
..++.+..++.++.+|||+|.++|+.|+|||+||+++|+||++||.+ +|.++ ++....|.++++++++|+.++
T Consensus 17 ~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~--~~~~~-----e~~~~~i~l~~v~~~~f~~ll 89 (256)
T 3hve_A 17 RLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNY--NPPKD-----DGSTYKIELEGISVMVMREIL 89 (256)
T ss_dssp HHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC------------------CEEECSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCC--CCCcc-----cCCCCeEEeCCCCHHHHHHHH
Confidence 34667788899999999999999999999999999999999999997 55421 234479999999999999999
Q ss_pred HhhccCCCCCCCCcccccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccChhhHHHHHHHHHHhhccccChHHHHHHH
Q 008477 408 EYMYTDGLKDIDPDQVCCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWL 487 (564)
Q Consensus 408 ~~iYt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~~~~n~~~~l 487 (564)
+|+|||.+ .++.+ ++.+++.+|++|+++.|+..|+++|.+.+ +++||+.++
T Consensus 90 ~~~Yt~~~-~i~~~-------------------------~v~~ll~~A~~l~i~~l~~~c~~~L~~~l---~~~n~~~i~ 140 (256)
T 3hve_A 90 DYIFSGQI-RLNED-------------------------TIQDVVQAADLLLLTDLKTLCCEFLEGCI---AAENCIGIR 140 (256)
T ss_dssp HHHHHSCC-CCC-C-------------------------CHHHHHHHHHHHTCHHHHHHHHHHHHHTC---CSSTTHHHH
T ss_pred hhccCCCC-cccHh-------------------------HHHHHHHHHHHHChHHHHHHHHHHHHhhC---CHhhHHHHH
Confidence 99999999 78888 89999999999999999999999999998 999999999
Q ss_pred HHHHhhcchhhcchh-hHHHHHHHhhHHHHHHH-H----HHHHHHHHH-----HHHHHHHHHHhcCCCCCCCCcccch
Q 008477 488 ILSDMYAAIVCSSLS-ILLVFLFSIFYGVLKQI-C----LTLGKLLIN-----LWVVDHIFLRLLSPTSQNPSSKFKH 554 (564)
Q Consensus 488 ~~A~~~~~~~c~~l~-~~~~~~~~~~~~~l~~~-~----~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (564)
.+|+.|+ |..+. .+..++..++.+..... . ...+.++++ ..-+..+|..+..|-.++|..|.++
T Consensus 141 ~~A~~~~---~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~~W~~~~~~~R~~~ 215 (256)
T 3hve_A 141 DFALHYC---LHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDTEIRKVH 215 (256)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHHHHHHTTCHHHHSSCHHHHHHHHHCC-------CTTHHHHTTTCCC--CCSTTT
T ss_pred HHHHHcC---cHHHHHHHHHHHHHHHHHHhCCcchhcCCHHHHHHHHccCCCCCCCHHHHHHHHHHHHHcCHHHHHHH
Confidence 9999999 77776 66667777766554311 1 223333332 2235578889999999999877654
No 2
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.92 E-value=3.8e-25 Score=203.26 Aligned_cols=147 Identities=27% Similarity=0.371 Sum_probs=127.7
Q ss_pred hhhhcccccCCCCccEEEEeCCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHhHh
Q 008477 330 VEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEY 409 (564)
Q Consensus 330 ~~~~~~~~~~~~~~Dv~~~~~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~ 409 (564)
.+.+..++.++.++||+|.++|+.|+|||.||++||+||++||.+ +|.|+.. ..|.++++++++|+.+|+|
T Consensus 22 ~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~--~~~e~~~-------~~i~l~~~~~~~f~~~l~~ 92 (172)
T 3htm_A 22 ADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEH--EMEESKK-------NRVEINDVEPEVFKEMMCF 92 (172)
T ss_dssp HHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHS--CCCGGGT-------TEEEECSSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHcc--CccccCC-------CeEEecCCCHHHHHHHHHH
Confidence 445566777899999999999999999999999999999999998 6666544 7999999999999999999
Q ss_pred hccCCCCCCCCcccccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccChhhHHHHHHHHHHhhccccChHHHHHHHHH
Q 008477 410 MYTDGLKDIDPDQVCCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLIL 489 (564)
Q Consensus 410 iYt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~~~~n~~~~l~~ 489 (564)
+|||.+ .++.+ ++.+|+.+|++|+++.|+..|+++|.+.+ +.+||+.++.+
T Consensus 93 ~Yt~~~-~~~~~-------------------------~~~~ll~~A~~~~~~~l~~~c~~~l~~~l---~~~n~~~~~~~ 143 (172)
T 3htm_A 93 IYTGKA-PNLDK-------------------------MADDLLAAADKYALERLKVMCEDALCSNL---SVENAAEILIL 143 (172)
T ss_dssp HHHSCC-TTGGG-------------------------THHHHHHHHHHTTCHHHHHHHHHHHHHTC---CTTTHHHHHHH
T ss_pred HhCCCC-CCcHH-------------------------HHHHHHHHHHHhCcHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence 999999 57766 89999999999999999999999999988 99999999999
Q ss_pred HHhhcchhhcchh-hHHHHHHHhhHHHHH
Q 008477 490 SDMYAAIVCSSLS-ILLVFLFSIFYGVLK 517 (564)
Q Consensus 490 A~~~~~~~c~~l~-~~~~~~~~~~~~~l~ 517 (564)
|..|+ +..+. .+..++..++.++++
T Consensus 144 A~~~~---~~~L~~~~~~~i~~~~~~v~~ 169 (172)
T 3htm_A 144 ADLHS---ADQLKTQAVDFINYHATDVLE 169 (172)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTC-----
T ss_pred HHHhC---cHHHHHHHHHHHHHHHHHHHc
Confidence 99999 77776 677777777766554
No 3
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.90 E-value=6.2e-25 Score=195.88 Aligned_cols=127 Identities=28% Similarity=0.407 Sum_probs=96.4
Q ss_pred hhhhcccccCCCCccEEEEeCCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHhHh
Q 008477 330 VEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEY 409 (564)
Q Consensus 330 ~~~~~~~~~~~~~~Dv~~~~~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~ 409 (564)
.+.+..++.++.++||+|.++|+.|+|||.||++||+||++||.+ +|.|+.. ..|.++++++++|+.+|+|
T Consensus 13 ~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~--~~~e~~~-------~~i~l~~~~~~~~~~~l~~ 83 (145)
T 4eoz_A 13 ADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEH--EMEESKK-------NRVEINDVEPEVFKEMMCF 83 (145)
T ss_dssp HHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHS--SSHHHHH-------TEEEECSSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcC--CCcCCCC-------ceEEecCCCHHHHHHHHHh
Confidence 445566677799999999999999999999999999999999998 6776644 6999999999999999999
Q ss_pred hccCCCCCCCCcccccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccChhhHHHHHHHHHHhhccccChHHHHHHHHH
Q 008477 410 MYTDGLKDIDPDQVCCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLIL 489 (564)
Q Consensus 410 iYt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~~~~n~~~~l~~ 489 (564)
+|||.+ .++.+ ++.+++.+|++|+++.|+..|+++|.+.+ +.+||+.++.+
T Consensus 84 ~Y~~~~-~~~~~-------------------------~~~~ll~~A~~~~~~~l~~~c~~~l~~~l---~~~n~~~~l~~ 134 (145)
T 4eoz_A 84 IYTGKA-PNLDK-------------------------MADDLLAAADKYALERLKVMCEDALCSNL---SVENAAEILIL 134 (145)
T ss_dssp HHHSCC-TTGGG-------------------------THHHHHHHHHHTTCHHHHHHHHCC-------------------
T ss_pred hccCcc-CCcHH-------------------------HHHHHHHHHHHhCHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence 999999 57766 89999999999999999999999999998 99999999999
Q ss_pred HHhhc
Q 008477 490 SDMYA 494 (564)
Q Consensus 490 A~~~~ 494 (564)
|+.|+
T Consensus 135 A~~~~ 139 (145)
T 4eoz_A 135 ADLHS 139 (145)
T ss_dssp -----
T ss_pred HHHhC
Confidence 99999
No 4
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.89 E-value=1.2e-24 Score=215.79 Aligned_cols=184 Identities=23% Similarity=0.298 Sum_probs=141.5
Q ss_pred hhhhhcccccCCCCccEEEEeC---CeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcC------CCC
Q 008477 329 SVEAMHISDHVDDLADVCVRVD---KKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEH------DLS 399 (564)
Q Consensus 329 ~~~~~~~~~~~~~~~Dv~~~~~---~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~------~v~ 399 (564)
.++.+..++.++.+|||+|.++ |+.|+|||+||+++|+||++||.+ +|.|+. ...|.++ +++
T Consensus 19 ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~--~~~e~~-------~~~i~l~~~~~~~~v~ 89 (279)
T 3i3n_A 19 LSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSG--QFSESR-------SGRVEMRKWSSEPGPE 89 (279)
T ss_dssp HHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC-----------------EEECCCCSSTTCSC
T ss_pred HHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcC--CCcccc-------CCeEEeccccccCCCC
Confidence 3566777888899999999998 999999999999999999999998 666554 4799998 899
Q ss_pred HHHHHHHhHhhccCCCCCCCCcccccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccChhhHHHHHHHHHHhhccccC
Q 008477 400 KETFEKMIEYMYTDGLKDIDPDQVCCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVS 479 (564)
Q Consensus 400 ~~~~~~~l~~iYt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~~ 479 (564)
+++|+.+|+|+|||.+ .++.+ ++.+++.+|++|+++.|+..|+++|.+.+ +
T Consensus 90 ~~~f~~ll~~~Ytg~~-~i~~~-------------------------~v~~ll~~A~~l~i~~L~~~c~~~L~~~l---~ 140 (279)
T 3i3n_A 90 PDTVEAVIEYMYTGRI-RVSTG-------------------------SVHEVLELADRFLLIRLKEFCGEFLKKKL---H 140 (279)
T ss_dssp HHHHHHHHHHHHHSEE-EEETT-------------------------THHHHHHHHHHTTCHHHHHHHHHHHHHHC---C
T ss_pred HHHHHHHHHhhCcCCc-ccCHH-------------------------HHHHHHHHHHHHCcHHHHHHHHHHHHHcC---C
Confidence 9999999999999999 68777 89999999999999999999999999998 9
Q ss_pred hHHHHHHHHHHHhhcchhhcchh-hHHHHHHHhhHHHHHHH-----HHHHHHHHHHH-----HHHHHHHHHhcCCCCCCC
Q 008477 480 PAELCHWLILSDMYAAIVCSSLS-ILLVFLFSIFYGVLKQI-----CLTLGKLLINL-----WVVDHIFLRLLSPTSQNP 548 (564)
Q Consensus 480 ~~n~~~~l~~A~~~~~~~c~~l~-~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 548 (564)
++||+.++.+|+.|+ |..+. .+..++..++.+.+... ....+.++++. .-+..+|..+..|-.++|
T Consensus 141 ~~n~~~i~~~A~~~~---~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~~lL~~d~L~v~sE~~vf~av~~W~~~~~ 217 (279)
T 3i3n_A 141 LSNCVAIHSLAHMYT---LSQLALKAADMIRRNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRNA 217 (279)
T ss_dssp TTTHHHHHHHHHHTT---CHHHHHHHHHHHHHTHHHHTTSSGGGGSCHHHHHHHHTCSSCCCSCHHHHHHHHHHHHHTTH
T ss_pred cchHHHHHHHHHHcC---cHHHHHHHHHHHHHHHHHHhcCcChhcCCHHHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCH
Confidence 999999999999999 77666 66666666666544321 12233333321 113456666666766776
Q ss_pred Ccccc
Q 008477 549 SSKFK 553 (564)
Q Consensus 549 ~~~~~ 553 (564)
..|.+
T Consensus 218 ~~r~~ 222 (279)
T 3i3n_A 218 EERER 222 (279)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 65543
No 5
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.89 E-value=3.2e-23 Score=209.09 Aligned_cols=146 Identities=26% Similarity=0.354 Sum_probs=122.5
Q ss_pred hhhcccccCCCCccEEEEeCCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHhHhh
Q 008477 331 EAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYM 410 (564)
Q Consensus 331 ~~~~~~~~~~~~~Dv~~~~~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~i 410 (564)
+.+..++.++.++||+|.++|++|+|||+||++||+||++||.+ +|.|+ ...+|.++++++++|+.+|+|+
T Consensus 163 ~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~--~~~e~-------~~~~i~l~~~~~~~f~~~L~~i 233 (312)
T 3hqi_A 163 DELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEH--EMEES-------KKNRVEINDVEPEVFKEMMCFI 233 (312)
T ss_dssp HHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC--------------CCSEEEECSSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhcc--Ccccc-------CCceEEecCCCHHHHHHHHHhh
Confidence 44555677889999999999999999999999999999999998 55554 4479999999999999999999
Q ss_pred ccCCCCCCCCcccccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccChhhHHHHHHHHHHhhccccChHHHHHHHHHH
Q 008477 411 YTDGLKDIDPDQVCCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILS 490 (564)
Q Consensus 411 Yt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~~~~n~~~~l~~A 490 (564)
|||.+ .++.+ ++.+|+.+|++|++++|+..|+++|.+.+ +.+||..++.+|
T Consensus 234 Yt~~~-~~~~~-------------------------~~~~ll~~A~~~~~~~l~~~c~~~l~~~~---~~~n~~~~l~~A 284 (312)
T 3hqi_A 234 YTGKA-PNLDK-------------------------MADDLLAAADKYALERLKVMCEDALCSNL---SVENAAEILILA 284 (312)
T ss_dssp HHSCC-TTHHH-------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHTTC---CTTTHHHHHHHH
T ss_pred cCCCC-CChHH-------------------------HHHHHHHHHHHhCHHHHHHHHHHHHHccC---CHHHHHHHHHHH
Confidence 99998 45555 99999999999999999999999999988 999999999999
Q ss_pred Hhhcchhhcchh-hHHHHHHHhhHHHHH
Q 008477 491 DMYAAIVCSSLS-ILLVFLFSIFYGVLK 517 (564)
Q Consensus 491 ~~~~~~~c~~l~-~~~~~~~~~~~~~l~ 517 (564)
+.|+ |..+. .+..++..++-+++.
T Consensus 285 ~~~~---~~~L~~~~~~~i~~~~~~v~~ 309 (312)
T 3hqi_A 285 DLHS---ADQLKTQAVDFINYHATDVLE 309 (312)
T ss_dssp HHTT---CHHHHHHHHHHHHHTC-----
T ss_pred HHhC---CHHHHHHHHHHHHHHHHHHhh
Confidence 9999 77776 666777766655543
No 6
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.87 E-value=3.1e-22 Score=169.14 Aligned_cols=104 Identities=28% Similarity=0.365 Sum_probs=91.4
Q ss_pred cccCCCCccEEEEeCC----eEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHhHhhc
Q 008477 336 SDHVDDLADVCVRVDK----KIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMY 411 (564)
Q Consensus 336 ~~~~~~~~Dv~~~~~~----~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iY 411 (564)
+++++.+|||+|.++| +.|+|||.||++||+||++||.+ +|.|+ . ..|.++++++++|+.+|+|+|
T Consensus 2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~--~~~e~-------~-~~i~l~~~~~~~f~~~l~~iY 71 (109)
T 2vkp_A 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYG--DLAEV-------K-SEIHIPDVEPAAFLILLKYMY 71 (109)
T ss_dssp CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---------------C-CEEEETTSCHHHHHHHHHHHH
T ss_pred cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcC--CcccC-------C-CeEEeCCCCHHHHHHHHHHHc
Confidence 4667899999999988 89999999999999999999998 56554 3 589999999999999999999
Q ss_pred cCCCCCCCCcccccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccChhhHHHHHHHHHHhhc
Q 008477 412 TDGLKDIDPDQVCCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLLFPLKRAVADVLLLHL 475 (564)
Q Consensus 412 t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l~~L~~~c~~~l~~~l 475 (564)
||.+ .++.+ ++.+++.+|++|+++.|+..|+++|.+.|
T Consensus 72 t~~~-~~~~~-------------------------~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 72 SDEI-DLEAD-------------------------TVLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp HCCC-CCCTT-------------------------THHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCc-cCCHH-------------------------HHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 9999 68777 89999999999999999999999998764
No 7
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.87 E-value=2e-22 Score=173.44 Aligned_cols=107 Identities=22% Similarity=0.344 Sum_probs=94.4
Q ss_pred hhhhcccccCCCCccEEEEeCCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHhHh
Q 008477 330 VEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEY 409 (564)
Q Consensus 330 ~~~~~~~~~~~~~~Dv~~~~~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~ 409 (564)
++.+..++.++.+|||+|.++|+.|+|||+||++||+||++||.+ +|.|+. ..+|.++++++++|+.+|+|
T Consensus 13 ~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~--~~~e~~-------~~~i~l~~~~~~~f~~ll~~ 83 (120)
T 2if5_A 13 LSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTS--GAVVDQ-------QNVYEIDFVSAEALTALMDF 83 (120)
T ss_dssp HHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-------C-------CSEEECCSSCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcC--CccccC-------CceEEeCCCCHHHHHHHHHH
Confidence 455666788899999999999999999999999999999999998 666543 47999999999999999999
Q ss_pred hccCCCCCCCCcccccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccChhhHHHHHHHHH
Q 008477 410 MYTDGLKDIDPDQVCCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLLFPLKRAVADVL 471 (564)
Q Consensus 410 iYt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l~~L~~~c~~~l 471 (564)
+|||.+ .++.+ ++.+++.+|++|++++|+..|+++|
T Consensus 84 ~Yt~~~-~~~~~-------------------------~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 84 AYTATL-TVSTA-------------------------NVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp HHHSCC-CCCGG-------------------------GHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HcCCCC-ccCHH-------------------------HHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 999999 67777 9999999999999999999999987
No 8
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.86 E-value=5.7e-22 Score=172.34 Aligned_cols=109 Identities=19% Similarity=0.305 Sum_probs=98.8
Q ss_pred hhhhhcccccCCCCccEEEEeCCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEc-CCCCHHHHHHHh
Q 008477 329 SVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEE-HDLSKETFEKMI 407 (564)
Q Consensus 329 ~~~~~~~~~~~~~~~Dv~~~~~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l-~~v~~~~~~~~l 407 (564)
.++.+..++.++.+|||+|.++|+.|+|||+||++||+||++||.+ +|.| ....|.+ +++++++|+.+|
T Consensus 16 l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~--~~~e--------~~~~i~l~~~~~~~~f~~ll 85 (127)
T 1r29_A 16 VLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTD--QLKR--------NLSVINLDPEINPEGFNILL 85 (127)
T ss_dssp HHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTS--TTTT--------TCSEEECCTTSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcC--CccC--------CCCEEEeCCCCCHHHHHHHH
Confidence 3455667788899999999999999999999999999999999998 6655 2368999 999999999999
Q ss_pred HhhccCCCCCCCCcccccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccChhhHHHHHHHHHHh
Q 008477 408 EYMYTDGLKDIDPDQVCCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLLFPLKRAVADVLLL 473 (564)
Q Consensus 408 ~~iYt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l~~L~~~c~~~l~~ 473 (564)
+|+|||.+ .++.+ ++.+|+.+|++|+++.|+..|+++|.+
T Consensus 86 ~~~Ytg~~-~~~~~-------------------------~~~~ll~~A~~~~i~~L~~~c~~~l~~ 125 (127)
T 1r29_A 86 DFMYTSRL-NLREG-------------------------NIMAVMATAMYLQMEHVVDTCRKFIKA 125 (127)
T ss_dssp HHHHHSCC-CCCTT-------------------------THHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHcCCCc-CcCHH-------------------------HHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999 68777 999999999999999999999999975
No 9
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.86 E-value=1.4e-21 Score=178.70 Aligned_cols=129 Identities=24% Similarity=0.313 Sum_probs=121.1
Q ss_pred hhhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 008477 6 QSTIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 6 ~~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
...+...++ |+++|.+|..|+||| |+|+..|+.++++.|++.|++++.+|..|+||||+|+..|+.+++++
T Consensus 17 ~~~v~~Ll~~Gadvn~~d~~g~t~l--------~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~ 88 (169)
T 4gpm_A 17 KDRVKDLIENGADVNASDSDGRTPL--------HHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKL 88 (169)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHH--------HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHH--------HHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHH
Confidence 355666676 999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 85 LLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 85 Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
|+++|++++.+|..|.| +|+|+. +.+++++|+++|++++..+ ..|.||||+|+..++.
T Consensus 89 Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d--~~G~TpL~~A~~~g~~ 149 (169)
T 4gpm_A 89 LISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD--SDGRTPLDLAREHGNE 149 (169)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHTTCH
T ss_pred HHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC--CCCCCHHHHHHHcCCH
Confidence 99999999999999998 788888 8999999999999999877 8899999999998874
No 10
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.86 E-value=5.3e-22 Score=176.13 Aligned_cols=111 Identities=18% Similarity=0.300 Sum_probs=95.7
Q ss_pred chhhhhcccccCCCCccEEEEeCCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHh
Q 008477 328 SSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMI 407 (564)
Q Consensus 328 ~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l 407 (564)
..++.+..++.++.+|||+|.++|+.|+|||+||++||+||++||.+ +|.|. ++...+|.++++++++|+.+|
T Consensus 33 ~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~--~~~e~-----e~~~~~I~l~~v~~~~f~~lL 105 (144)
T 2ppi_A 33 RLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNY--NPPKD-----DGSTYKIELEGISVMVMREIL 105 (144)
T ss_dssp HHHHHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHH--CC----------CCCEEECCSSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcC--CCccc-----cCCCcEEEeCCCCHHHHHHHH
Confidence 34567778899999999999999999999999999999999999987 55542 124479999999999999999
Q ss_pred HhhccCCCCCCCCcccccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccChhhHHHHHHHHH
Q 008477 408 EYMYTDGLKDIDPDQVCCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLLFPLKRAVADVL 471 (564)
Q Consensus 408 ~~iYt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l~~L~~~c~~~l 471 (564)
+|+|||.+ .++.+ ++.+|+.+|++|++++|++.|+++|
T Consensus 106 ~fiYtg~~-~i~~~-------------------------~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 106 DYIFSGQI-RLNED-------------------------TIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp HHHTTSCC-CCCTT-------------------------THHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHhCCCC-CCCHH-------------------------HHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 99999999 68877 9999999999999999999999876
No 11
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.86 E-value=2e-22 Score=177.75 Aligned_cols=114 Identities=22% Similarity=0.344 Sum_probs=101.7
Q ss_pred hhhhhcccccCCCCccEEEEeCCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcC-CCCHHHHHHHh
Q 008477 329 SVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEH-DLSKETFEKMI 407 (564)
Q Consensus 329 ~~~~~~~~~~~~~~~Dv~~~~~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~-~v~~~~~~~~l 407 (564)
.++.+..++.++.+|||+|.++|+.|+|||+||++||+||++||.+ +|.|. ..|.++ ++++++|+.+|
T Consensus 23 l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~--~~~e~---------~~i~l~~~v~~~~~~~lL 91 (138)
T 2z8h_A 23 VLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVG--QTDAE---------LTVTLPEEVTVKGFEPLI 91 (138)
T ss_dssp HHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTT--CCCTT---------EEEECCTTSCHHHHHHHH
T ss_pred HHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhc--CCCCC---------ceEEeCCCCCHHHHHHHH
Confidence 3556777788899999999999999999999999999999999997 55442 478895 99999999999
Q ss_pred HhhccCCCCCCCCcccccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccChhhHHHHHHHHHHhhccccChHH
Q 008477 408 EYMYTDGLKDIDPDQVCCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAE 482 (564)
Q Consensus 408 ~~iYt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~~~~n 482 (564)
+|+|||.+ .++.+ ++.+|+.+|++|+++.|+..|+++|.+.+ +.+|
T Consensus 92 ~~~Ytg~~-~i~~~-------------------------~v~~ll~~A~~~~i~~L~~~C~~~l~~~l---~~sn 137 (138)
T 2z8h_A 92 QFAYTAKL-ILSKD-------------------------NVDEVCRCVEFLSVHNIEESCFQFLKFKF---LDST 137 (138)
T ss_dssp HHHHHSCC-CCCTT-------------------------THHHHHHHHHHHTCGGGHHHHHHHTTCCC---SCCC
T ss_pred HHhcCCCc-ccCHH-------------------------HHHHHHHHHHHhCCHHHHHHHHHHHHHhc---cccc
Confidence 99999999 68877 89999999999999999999999999888 5554
No 12
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.86 E-value=7e-22 Score=170.17 Aligned_cols=106 Identities=25% Similarity=0.325 Sum_probs=96.3
Q ss_pred hhhhcccccCCCCccEEEEeCCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHhHh
Q 008477 330 VEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEY 409 (564)
Q Consensus 330 ~~~~~~~~~~~~~~Dv~~~~~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~ 409 (564)
++.+..++.++.+|||++.++|+.|+|||+||++||+||++||.+ + ...|.++++++++|+.+|+|
T Consensus 16 ~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~--~------------~~~i~l~~~~~~~f~~ll~~ 81 (121)
T 1buo_A 16 LCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHR--N------------SQHYTLDFLSPKTFQQILEY 81 (121)
T ss_dssp HHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTS--C------------CSEEEECSSCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcC--C------------CcEEEeCCCCHHHHHHHHHh
Confidence 455666778899999999999999999999999999999999986 1 25899999999999999999
Q ss_pred hccCCCCCCCCcccccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccChhhHHHHHHHHHHhhc
Q 008477 410 MYTDGLKDIDPDQVCCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLLFPLKRAVADVLLLHL 475 (564)
Q Consensus 410 iYt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l~~L~~~c~~~l~~~l 475 (564)
+|||.+ .++.+ ++.+++.+|++|++++|+..|+++|.+.|
T Consensus 82 ~Ytg~~-~~~~~-------------------------~~~~ll~~A~~~~i~~L~~~c~~~l~~~I 121 (121)
T 1buo_A 82 AYTATL-QAKAE-------------------------DLDDLLYAAEILEIEYLEEQCLKMLETIQ 121 (121)
T ss_dssp HHHSCC-CCCGG-------------------------GHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hcCCCc-CCCHH-------------------------HHHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence 999999 68777 99999999999999999999999998654
No 13
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.86 E-value=3.3e-22 Score=171.66 Aligned_cols=105 Identities=15% Similarity=0.204 Sum_probs=94.6
Q ss_pred hhhhcccccCCCCccEEEEeCCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHhHh
Q 008477 330 VEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEY 409 (564)
Q Consensus 330 ~~~~~~~~~~~~~~Dv~~~~~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~ 409 (564)
++.+..++.++.+|||+|.++|++|+|||+||++||+||++||.+ +| ...|.++++++++|+.+|+|
T Consensus 12 ~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~--~~-----------~~~i~l~~~~~~~f~~ll~~ 78 (119)
T 3b84_A 12 LQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGD--GS-----------GGSVVLPAGFAEIFGLLLDF 78 (119)
T ss_dssp HHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTT--TT-----------CCCEEECGGGHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCC--CC-----------CCeEEeCCCCHHHHHHHHHH
Confidence 455667788899999999999999999999999999999999987 33 25899999999999999999
Q ss_pred hccCCCCCCCCcccccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccChhhHHHHHHHHHHh
Q 008477 410 MYTDGLKDIDPDQVCCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLLFPLKRAVADVLLL 473 (564)
Q Consensus 410 iYt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l~~L~~~c~~~l~~ 473 (564)
+|||.+ .++.+ ++.+++.+|++|++++|++.|+++|.+
T Consensus 79 iYtg~~-~~~~~-------------------------~v~~ll~~A~~~~i~~L~~~C~~~l~~ 116 (119)
T 3b84_A 79 FYTGHL-ALTSG-------------------------NRDQVLLAARELRVPEAVELCQSFKPK 116 (119)
T ss_dssp HHHSCC-CCCTT-------------------------THHHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred HcCCCC-ccCHH-------------------------HHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 999999 68777 899999999999999999999999865
No 14
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.85 E-value=1.4e-21 Score=166.91 Aligned_cols=104 Identities=23% Similarity=0.312 Sum_probs=93.7
Q ss_pred hhhhcccccCCCCccEEEEeCCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcC--CCCHHHHHHHh
Q 008477 330 VEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEH--DLSKETFEKMI 407 (564)
Q Consensus 330 ~~~~~~~~~~~~~~Dv~~~~~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~--~v~~~~~~~~l 407 (564)
++.+..++.++.+|||+|.++|+.|+|||.||++||+||++||.+ + ....|.++ ++++++|+.+|
T Consensus 10 ~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~--~-----------~~~~i~l~~~~~~~~~f~~ll 76 (116)
T 2vpk_A 10 LERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRS--T-----------SENNVFLDQSQVKADGFQKLL 76 (116)
T ss_dssp HHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTT--C-----------CCSCEECCTTTCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcC--C-----------CCCeEEeecCCCCHHHHHHHH
Confidence 455666778899999999999999999999999999999999987 2 13577787 99999999999
Q ss_pred HhhccCCCCCCCCcccccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccChhhHHHHHHHHHH
Q 008477 408 EYMYTDGLKDIDPDQVCCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLLFPLKRAVADVLL 472 (564)
Q Consensus 408 ~~iYt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l~~L~~~c~~~l~ 472 (564)
+|+|||.+ .++.+ ++.+++.+|++|+++.|+..|+++|.
T Consensus 77 ~~~Yt~~~-~~~~~-------------------------~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 77 EFIYTGTL-NLDSW-------------------------NVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp HHHHHSCC-CCCTT-------------------------THHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHcCCCc-ccCHH-------------------------HHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 99999999 68777 99999999999999999999999984
No 15
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.85 E-value=5.4e-22 Score=174.21 Aligned_cols=108 Identities=15% Similarity=0.188 Sum_probs=95.0
Q ss_pred hhhhhcccccCCCCccEEEEeCCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHhH
Q 008477 329 SVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIE 408 (564)
Q Consensus 329 ~~~~~~~~~~~~~~~Dv~~~~~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~ 408 (564)
.++.+..++.++.++||+|.++|++|+|||+||++||+||++||.+ +| ...|.++++++++|+.+|+
T Consensus 12 l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~--~~-----------~~~i~l~~~~~~~f~~lL~ 78 (135)
T 2yy9_A 12 VLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGD--GT-----------GGSVVLPAGFAEIFGLLLD 78 (135)
T ss_dssp HHHHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC-----------------CCEEECGGGHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcC--CC-----------CCeEEeCCCCHHHHHHHHH
Confidence 3566777888999999999999999999999999999999999987 33 2579999999999999999
Q ss_pred hhccCCCCCCCCcccccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccChhhHHHHHHHHHHhhc
Q 008477 409 YMYTDGLKDIDPDQVCCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLLFPLKRAVADVLLLHL 475 (564)
Q Consensus 409 ~iYt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l~~L~~~c~~~l~~~l 475 (564)
|+|||.+ .++.+ ++.+|+.+|++|+++.|++.|+++|.+.+
T Consensus 79 fiYtg~~-~i~~~-------------------------~v~~ll~~A~~l~i~~L~~~C~~~l~~~l 119 (135)
T 2yy9_A 79 FFYTGHL-ALTSG-------------------------NRDQVLLAAKELRVPEAVELCQSFQPQTS 119 (135)
T ss_dssp HHHHSCC-CCCTT-------------------------THHHHHHHHHHTTCHHHHHHHHHCCC---
T ss_pred HHhCCCC-CCCHH-------------------------HHHHHHHHHHHhCcHHHHHHHHHHHHHhc
Confidence 9999999 68877 89999999999999999999999998877
No 16
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.84 E-value=1.7e-21 Score=167.17 Aligned_cols=103 Identities=22% Similarity=0.354 Sum_probs=93.9
Q ss_pred hhhhcccccCCCCccEEEEeCCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHhHh
Q 008477 330 VEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEY 409 (564)
Q Consensus 330 ~~~~~~~~~~~~~~Dv~~~~~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~ 409 (564)
++.+..++.++.+|||+|.++|+.|+|||.||++||+||++||.+ ...+|.++++++++|+.+|+|
T Consensus 15 ~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~--------------~~~~i~l~~~~~~~f~~ll~~ 80 (119)
T 2q81_A 15 LEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD--------------QKDVVHLDISNAAGLGQVLEF 80 (119)
T ss_dssp HHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHH--------------CCSGGGGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcC--------------CCCEEEeCCCCHHHHHHHHHH
Confidence 456677788899999999999999999999999999999999985 124788999999999999999
Q ss_pred hccCCCCCCCCcccccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccChhhHHHHHHHHHH
Q 008477 410 MYTDGLKDIDPDQVCCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLLFPLKRAVADVLL 472 (564)
Q Consensus 410 iYt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l~~L~~~c~~~l~ 472 (564)
+|||.+ .++.+ ++.+|+.+|++|+++.|++.|+++|.
T Consensus 81 ~Ytg~~-~i~~~-------------------------~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 81 MYTAKL-SLSPE-------------------------NVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp HHHSCC-CCCTT-------------------------THHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HcCCCC-ccCHH-------------------------HHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999 68877 89999999999999999999999884
No 17
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.82 E-value=3e-21 Score=168.14 Aligned_cols=107 Identities=19% Similarity=0.325 Sum_probs=90.4
Q ss_pred hhhhhcccccCCCCccEEEEeCCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcC-CCCHHHHHHHh
Q 008477 329 SVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEH-DLSKETFEKMI 407 (564)
Q Consensus 329 ~~~~~~~~~~~~~~~Dv~~~~~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~-~v~~~~~~~~l 407 (564)
.++.+..++.++.+|||+|.++|+.|+|||+||++||+||++||.+ + ....|.++ ++++++|+.+|
T Consensus 20 l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~--~-----------~~~~i~l~~~~~~~~f~~ll 86 (129)
T 3ga1_A 20 ILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNN--S-----------RSAVVELPAAVQPQSFQQIL 86 (129)
T ss_dssp HHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHH--C-----------CCSEEECCTTCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcC--C-----------CCCEEEECCCCCHHHHHHHH
Confidence 3556677788899999999999999999999999999999999986 2 33689996 99999999999
Q ss_pred HhhccCCCCCCCCcccccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccChhhHHHHHHHHHHhh
Q 008477 408 EYMYTDGLKDIDPDQVCCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLLFPLKRAVADVLLLH 474 (564)
Q Consensus 408 ~~iYt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l~~L~~~c~~~l~~~ 474 (564)
+|+|||.+ .++.+ ++.+++.+|++|+++.|++.|+++|.+.
T Consensus 87 ~~iYtg~~-~i~~~-------------------------~~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 87 SFCYTGRL-SMNVG-------------------------DQDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp HHHHHSEE-ECCTT-------------------------THHHHHHHHHHTTBTTSSCC--------
T ss_pred HHHhCCcc-ccCHH-------------------------HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999 78887 8999999999999999999999999765
No 18
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.82 E-value=1.1e-21 Score=169.72 Aligned_cols=106 Identities=23% Similarity=0.357 Sum_probs=93.0
Q ss_pred hhhhcccccCCCCccEEEEeCCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEc-CCCCHHHHHHHhH
Q 008477 330 VEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEE-HDLSKETFEKMIE 408 (564)
Q Consensus 330 ~~~~~~~~~~~~~~Dv~~~~~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l-~~v~~~~~~~~l~ 408 (564)
++.+..++.++.+|||+|.++|+.|+|||+||++||+||++||.+ +|.|+ ..|.+ +++++++|+.+|+
T Consensus 17 ~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~--~~~e~---------~~i~l~~~v~~~~f~~lL~ 85 (124)
T 2ihc_A 17 LLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVG--QADGE---------LNITLPEEVTVKGFEPLIQ 85 (124)
T ss_dssp HHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTT--C---C---------EEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcC--CCCCC---------ceEeecCCcCHHHHHHHHH
Confidence 455667788899999999999999999999999999999999997 55442 47888 4999999999999
Q ss_pred hhccCCCCCCCCcccccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccChhhHHHHHHHHHH
Q 008477 409 YMYTDGLKDIDPDQVCCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLLFPLKRAVADVLL 472 (564)
Q Consensus 409 ~iYt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l~~L~~~c~~~l~ 472 (564)
|+|||.+ .++.+ ++.+|+.+|++|+++.|+..|+++|.
T Consensus 86 ~iYtg~~-~i~~~-------------------------~v~~ll~~A~~~~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 86 FAYTAKL-ILSKE-------------------------NVDEVCKCVEFLSVHNIEESCFQFLK 123 (124)
T ss_dssp HHHHSEE-EEETT-------------------------THHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred HhcCCCc-ccCHH-------------------------HHHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 9999999 67777 89999999999999999999998764
No 19
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.82 E-value=1.5e-21 Score=169.20 Aligned_cols=106 Identities=24% Similarity=0.335 Sum_probs=95.2
Q ss_pred hhhhhcccccCCCCccEEEEeCCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcCC-CCHHHHHHHh
Q 008477 329 SVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHD-LSKETFEKMI 407 (564)
Q Consensus 329 ~~~~~~~~~~~~~~~Dv~~~~~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~-v~~~~~~~~l 407 (564)
.++.+..++.++.+|||+|.++|+.|+|||+||++||+||++||.+ +|.| ...|.+++ +++++|+.+|
T Consensus 19 l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~--~~~e---------~~~i~l~~~~~~~~f~~~l 87 (125)
T 3ohu_A 19 ILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVG--QTKN---------DLVVSLPEEVTARGFGPLL 87 (125)
T ss_dssp HHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTT--CCCS---------SCEEECCTTCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcC--CCCC---------CcEEEeCCCCCHHHHHHHH
Confidence 3566777888899999999999999999999999999999999997 5544 35899998 9999999999
Q ss_pred HhhccCCCCCCCCcccccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccChhhHHHHHHHHH
Q 008477 408 EYMYTDGLKDIDPDQVCCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLLFPLKRAVADVL 471 (564)
Q Consensus 408 ~~iYt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l~~L~~~c~~~l 471 (564)
+|+|||.+ .++.+ ++.+|+.+|++|+++.|++.|+++|
T Consensus 88 ~~iYtg~~-~~~~~-------------------------~v~~ll~~A~~l~i~~L~~~C~~~L 125 (125)
T 3ohu_A 88 QFAYTAKL-LLSRE-------------------------NIREVIRCAEFLRMHNLEDSCFSFL 125 (125)
T ss_dssp HHHTTSEE-EECTT-------------------------THHHHHHHHHHHTBSSCTTSSCCCC
T ss_pred HhHcCCce-EECHH-------------------------HHHHHHHHHHHhCCHHHHHHHHHhC
Confidence 99999999 68777 8999999999999999999998653
No 20
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.81 E-value=6.6e-20 Score=168.12 Aligned_cols=124 Identities=19% Similarity=0.244 Sum_probs=111.7
Q ss_pred CCCCCeEEEecCeeechhhHhhcccChhHHHhccccccccccceEEcCCCCHHHHHHHhhhHccCCccCCcccHHHHHHH
Q 008477 168 SFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDLVKI 247 (564)
Q Consensus 168 ~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~l~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~~~~~ll~~ 247 (564)
+.++||+|.++|+.|+|||.||+++|+||++||.+++.++....|.++++++++|+.+|+|+|||.+.++.+++.+++.+
T Consensus 32 ~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~~~~~~~~~ll~~ 111 (172)
T 3htm_A 32 SRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAA 111 (172)
T ss_dssp TCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTHHHHHHH
T ss_pred CCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Confidence 34579999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred HhHhcHH--------HHHHHHH--HHHHHHHHHHHcCcHHHHHHHHHHHhhcCC
Q 008477 248 CKVCKCE--------SLQRIIE--KELIHQKYAEYKALRDVDNSQKRFILQGSA 291 (564)
Q Consensus 248 a~~c~~~--------~L~~~l~--~~l~~~~~a~~~~~~~L~~~~~~~i~~~~~ 291 (564)
|+.++++ +|.+.++ |++.++.+|..+++..|.+.|.+||.+||.
T Consensus 112 A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~ 165 (172)
T 3htm_A 112 ADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHAT 165 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred HHHhCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 9655444 4444332 689999999999999999999999999997
No 21
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.80 E-value=7.6e-20 Score=178.95 Aligned_cols=137 Identities=18% Similarity=0.270 Sum_probs=109.5
Q ss_pred CCCCCCeEEEecCeeechhhHhhcccChhHHHhcccccc--ccccceEEcCCCCHHHHHHHhhhHccCCccCCcccHHHH
Q 008477 167 DSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWR--YRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDL 244 (564)
Q Consensus 167 ~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~l~~~~~~--e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~~~~~l 244 (564)
++.+|||+|.++|+.|+|||.||+++|+||++||.+++. ++....|.++++++++|+.+++|+|||.+.++.+++.++
T Consensus 28 ~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i~~~~v~~l 107 (256)
T 3hve_A 28 ESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDV 107 (256)
T ss_dssp --CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCCCC-CCHHHH
T ss_pred cCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCcccHhHHHHH
Confidence 456779999999999999999999999999999998887 667789999999999999999999999999999999999
Q ss_pred HHHHhHhc--------HHHHHHHHH--HHHHHHHHHHHcCcHHHHHHHHHHHhhcCC-C-CCCCccchhHH
Q 008477 245 VKICKVCK--------CESLQRIIE--KELIHQKYAEYKALRDVDNSQKRFILQGSA-L-PEEDRLPAALS 303 (564)
Q Consensus 245 l~~a~~c~--------~~~L~~~l~--~~l~~~~~a~~~~~~~L~~~~~~~i~~~~~-v-~~~~~l~~~l~ 303 (564)
+.+|+.++ .++|.+.++ ||+.++.+|+.+++..|.+.|.+||.+||. + ..++|+..+..
T Consensus 108 l~~A~~l~i~~l~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~ 178 (256)
T 3hve_A 108 VQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQ 178 (256)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTCCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSCHH
T ss_pred HHHHHHHChHHHHHHHHHHHHhhCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCCHH
Confidence 99995444 455554443 689999999999999999999999999998 4 55555444443
No 22
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.79 E-value=3.8e-19 Score=156.26 Aligned_cols=119 Identities=27% Similarity=0.371 Sum_probs=109.4
Q ss_pred CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC
Q 008477 15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE 94 (564)
Q Consensus 15 g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~ 94 (564)
|+|+ .+|..|+||| |+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus 1 G~d~-~~~~~g~t~L--------~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~ 71 (137)
T 3c5r_A 1 GIDP-FTNHRGETLL--------HIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71 (137)
T ss_dssp ---C-CCCTTCCCHH--------HHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred CCCC-CcCCCCCCHH--------HHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccC
Confidence 5677 7899999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 95 HTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 95 ~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
.|..|.| +|+|+. +.+++++|+++|++++..+ ..|.||+|+|+..+..
T Consensus 72 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~g~tpl~~A~~~~~~ 122 (137)
T 3c5r_A 72 TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN--IFGLRPVDYTDDESMK 122 (137)
T ss_dssp CCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCGGGGCCCHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC--CCCCCHHHHHhhccHH
Confidence 9999998 788888 8999999999999999877 8899999999986663
No 23
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.79 E-value=1.5e-19 Score=158.74 Aligned_cols=119 Identities=23% Similarity=0.165 Sum_probs=112.6
Q ss_pred CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC
Q 008477 15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE 94 (564)
Q Consensus 15 g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~ 94 (564)
++++|.+|..|.||| |+|+..|+.+++++|+++|++++.+|..|+||||+|+. |+.+++++|+++|++++.
T Consensus 2 ~~~~~~~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~ 72 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGL--------ATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNC 72 (136)
T ss_dssp CCCCSCCCCCCSCHH--------HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSC
T ss_pred CCCccCCCCCCccHH--------HHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCC
Confidence 578999999999999 99999999999999999999999999999999999999 999999999999999999
Q ss_pred ccCC-CCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 95 HTFD-GDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 95 ~d~~-g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
.|.. |.| +|+|+. +.+++++|+++|++++..+ ..|.||+|+|+..++.
T Consensus 73 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d--~~g~tpl~~A~~~~~~ 124 (136)
T 1d9s_A 73 ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCD--AWGRLPVDLAEEQGHR 124 (136)
T ss_dssp CBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCS--SSSSCHHHHHHHHTCH
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC--CCCCCHHHHHHHcCCH
Confidence 9999 887 788888 8999999999999998877 7899999999988774
No 24
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.79 E-value=1.4e-19 Score=154.37 Aligned_cols=98 Identities=19% Similarity=0.338 Sum_probs=88.1
Q ss_pred hhhhhcccccCCCCccEEEEeCCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHhH
Q 008477 329 SVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIE 408 (564)
Q Consensus 329 ~~~~~~~~~~~~~~~Dv~~~~~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~ 408 (564)
.++.+..++.++.+|||++.++|+.|+|||+||++||+||++||.+ + ...|.++++++++|+.+|+
T Consensus 18 l~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~--~------------~~~i~l~~~~~~~f~~~l~ 83 (116)
T 3fkc_A 18 LLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSV--A------------GQVVELSFIRAEIFAEILN 83 (116)
T ss_dssp HHHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTS--C------------CSEEEECSSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcC--C------------CCEEEeCCCCHHHHHHHHH
Confidence 3455666788899999999999999999999999999999999986 1 2589999999999999999
Q ss_pred hhccCCCCCCCCcccccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccChhhHHH
Q 008477 409 YMYTDGLKDIDPDQVCCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLLFPLKR 465 (564)
Q Consensus 409 ~iYt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l~~L~~ 465 (564)
|+|||.++.++.+ ++.+++.+|++|++++|++
T Consensus 84 ~~Ytg~~~~~~~~-------------------------~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 84 YIYSSKIVRVRSD-------------------------LLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp HHTTSCCCSCCHH-------------------------HHHHHHHHHHHHTCHHHHT
T ss_pred hhcCCCcCCCCHH-------------------------HHHHHHHHHHHhCccccCc
Confidence 9999999557776 9999999999999999975
No 25
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.78 E-value=9.9e-19 Score=159.51 Aligned_cols=128 Identities=24% Similarity=0.339 Sum_probs=119.0
Q ss_pred hhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 008477 7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML 85 (564)
Q Consensus 7 ~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~L 85 (564)
..+...++ |+++|.+|..|.||| |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus 28 ~~v~~Ll~~g~~~~~~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 99 (169)
T 2y1l_E 28 DEVRILMANGADVNAEDASGWTPL--------HLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVL 99 (169)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHH--------HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHH--------HHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 45556665 999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 86 LESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 86 l~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
+++|++++..|..|.| +|+|+. +.+++++|+++|++++..+ ..|.||+|+|+..++.
T Consensus 100 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~g~t~l~~A~~~~~~ 159 (169)
T 2y1l_E 100 LKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQD--KFGKTAFDISIDNGNE 159 (169)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHTTCH
T ss_pred HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC--CCCCCHHHHHHHhCCH
Confidence 9999999999999998 788888 8999999999999998877 8899999999988774
No 26
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.78 E-value=1.8e-19 Score=178.46 Aligned_cols=138 Identities=14% Similarity=0.260 Sum_probs=113.5
Q ss_pred CCCCCeEEEec---CeeechhhHhhcccChhHHHhccccccccccceEEcC------CCCHHHHHHHhhhHccCCccCCc
Q 008477 168 SFPPDVVFYVQ---GRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSRE------KLSYPALYGLIHFFYSDRLEIAV 238 (564)
Q Consensus 168 ~~~~Dv~~~v~---~~~~~~Hk~iL~a~S~~f~~l~~~~~~e~~~~~i~l~------~v~~~~~~~lL~ylYtg~~~i~~ 238 (564)
+.+|||+|.++ |+.|+|||.||+++|+||++||.++++|+....|.++ ++++++|+.+++|+|||.+.++.
T Consensus 30 ~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~ 109 (279)
T 3i3n_A 30 GLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVST 109 (279)
T ss_dssp TTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEEEET
T ss_pred CCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcccCH
Confidence 45679999998 9999999999999999999999999999998999998 89999999999999999999999
Q ss_pred ccHHHHHHHHhHhc--------HHHHHHHHH--HHHHHHHHHHHcCcHHHHHHHHHHHhhcCC-C-CCCCccchhHHHH
Q 008477 239 DDMEDLVKICKVCK--------CESLQRIIE--KELIHQKYAEYKALRDVDNSQKRFILQGSA-L-PEEDRLPAALSRI 305 (564)
Q Consensus 239 ~~~~~ll~~a~~c~--------~~~L~~~l~--~~l~~~~~a~~~~~~~L~~~~~~~i~~~~~-v-~~~~~l~~~l~~~ 305 (564)
+++.+++.+|+.++ .++|.+.++ ||+.++.+|+.+++..|.+.|.+||.+||. + ..++|+..+...+
T Consensus 110 ~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l 188 (279)
T 3i3n_A 110 GSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLPFHLI 188 (279)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGSCHHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcCCHHHH
Confidence 99999999994333 566666554 799999999999999999999999999998 5 7777766555444
No 27
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.78 E-value=9.2e-19 Score=159.93 Aligned_cols=110 Identities=25% Similarity=0.345 Sum_probs=97.7
Q ss_pred hhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 008477 7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML 85 (564)
Q Consensus 7 ~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~L 85 (564)
..+...++ |++++.+|..|+||| |+|+..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.+++++|
T Consensus 51 ~~~~~ll~~gad~~~~d~~g~TpL--------h~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~L 122 (169)
T 4gpm_A 51 EVVKLLISKGADVNAKDSDGRTPL--------HHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 122 (169)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHH--------HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhcccchhhhccCCCCHH--------HHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 44455555 999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCC
Q 008477 86 LESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPP 124 (564)
Q Consensus 86 l~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~ 124 (564)
+++|++++.+|..|.| +|+|+. +.+++++|+++|+++..
T Consensus 123 l~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 123 ISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred HHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence 9999999999999998 788887 89999999999998753
No 28
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.77 E-value=1.3e-18 Score=155.84 Aligned_cols=128 Identities=20% Similarity=0.268 Sum_probs=116.6
Q ss_pred hhhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 008477 6 QSTIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 6 ~~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
...+...++ |++++ .|..|.||| |+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++
T Consensus 15 ~~~v~~Ll~~g~~~~-~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 85 (153)
T 1awc_B 15 DDEVRILMANGAPFT-TDWLGTSPL--------HLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEV 85 (153)
T ss_dssp HHHHHHHHHHTCCCC-CCTTCCCHH--------HHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHcCCCCC-cCCCCCCHH--------HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHH
Confidence 344555565 77776 588999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 85 LLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 85 Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
|+++|++++..|..|.| +|+|+. +.+++++|+++|++++..+ ..|.||+|+|+..++.
T Consensus 86 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~g~t~l~~A~~~~~~ 146 (153)
T 1awc_B 86 LLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS--KFCKTAFDISIDNGNE 146 (153)
T ss_dssp HHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHTTCH
T ss_pred HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC--CCCCCHHHHHHHcCCH
Confidence 99999999999999998 788888 8999999999999998877 8899999999988774
No 29
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.77 E-value=1.2e-19 Score=155.07 Aligned_cols=93 Identities=19% Similarity=0.279 Sum_probs=83.7
Q ss_pred ccCCCCccEEEEeCCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHhHhhccCCCC
Q 008477 337 DHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLK 416 (564)
Q Consensus 337 ~~~~~~~Dv~~~~~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~ 416 (564)
+.++.+|||+|.++|++|+|||+||+++|+||++ .. ..|.++++++++|+.+|+|+|||++
T Consensus 25 r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~--~~----------------~~i~l~~v~~~~f~~ll~fiYtg~~- 85 (119)
T 3m5b_A 25 RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR--RG----------------QWALGEGISPSTFAQLLNFVYGESV- 85 (119)
T ss_dssp HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC--CE----------------EEECCSSCCHHHHHHHHHHHTTCCE-
T ss_pred HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc--CC----------------CEEEeCCCCHHHHHHHHHHHcCCCc-
Confidence 4568999999999999999999999999999974 11 4789999999999999999999999
Q ss_pred CCCCcccccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccChhhHHHHHHHHHHh
Q 008477 417 DIDPDQVCCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLLFPLKRAVADVLLL 473 (564)
Q Consensus 417 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l~~L~~~c~~~l~~ 473 (564)
.++.+ ++.+++.+|++|+++.|++.|++++..
T Consensus 86 ~i~~~-------------------------~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 86 ELQPG-------------------------ELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp EECGG-------------------------GHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred CcCHH-------------------------HHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 78877 999999999999999999999998754
No 30
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.77 E-value=1.4e-18 Score=157.86 Aligned_cols=129 Identities=22% Similarity=0.315 Sum_probs=119.6
Q ss_pred hhhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 008477 6 QSTIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 6 ~~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
...+...++ |.+++.+|..|.||| |+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++
T Consensus 16 ~~~v~~ll~~~~~~~~~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 87 (167)
T 3v31_A 16 MLYLATRIEQENVINHTDEEGFTPL--------MWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM 87 (167)
T ss_dssp HHHHHHHHHHSSCTTCCCTTSCCHH--------HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHcCCCcCCCCCCCCCHH--------HHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence 345566666 899999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 85 LLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 85 Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
|+++|++++..|..|.| +|+|+. +.+++++|+++|++++..+ ..|.||+|+|+..++.
T Consensus 88 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~g~t~l~~A~~~~~~ 148 (167)
T 3v31_A 88 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET--DSGYNSMDLAVALGYR 148 (167)
T ss_dssp HHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHHTCH
T ss_pred HHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC--CCCCCHHHHHHHcCcH
Confidence 99999999999999998 788888 8999999999999998877 8899999999998884
No 31
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.77 E-value=1.9e-18 Score=159.18 Aligned_cols=131 Identities=24% Similarity=0.223 Sum_probs=119.1
Q ss_pred hhHHhhcC--CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 008477 7 STIDAELD--EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 7 ~~l~~~~~--g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
..+...++ +.+++..|..|+||| |+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++
T Consensus 19 ~~v~~ll~~~~~~~~~~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 90 (179)
T 3f6q_A 19 VAVRLWLDNTENDLNQGDDHGFSPL--------HWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90 (179)
T ss_dssp HHHHHHHHCTTSCTTCCCTTSCCHH--------HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCcccccccCCCCCCHH--------HHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 34445554 678999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccchhh
Q 008477 85 LLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLE 147 (564)
Q Consensus 85 Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~~l~ 147 (564)
|+++|++++..|..|.| +|+|+. +.+++++|+++|++++..+ ..|.||+|+|+..++..+.
T Consensus 91 Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~g~tpl~~A~~~~~~~~~ 154 (179)
T 3f6q_A 91 LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN--KYGEMPVDKAKAPLRELLR 154 (179)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCC--TTSCCGGGGSCHHHHHHHH
T ss_pred HHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhc--cCCCCcHHHHHHHHHHHHH
Confidence 99999999999999998 788888 8999999999999998877 8899999999987775433
No 32
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=171.90 Aligned_cols=133 Identities=20% Similarity=0.260 Sum_probs=76.8
Q ss_pred hHHhhcC-CCCCCCCCCCCCCCCCC-------------------------CCChhHHHHHhcCCHHHHHHHHHcCCCccc
Q 008477 8 TIDAELD-EIDLDASDFSSSVPLKK-------------------------VPNGDVFEASRAGDVDRLRYILESGVNVNA 61 (564)
Q Consensus 8 ~l~~~~~-g~~v~~~d~~g~tpL~~-------------------------~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~ 61 (564)
.+...++ |+++|.+|.+|+|||+. .+.+++|+|+..++.++++.|++.|+++|.
T Consensus 68 ~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~ 147 (269)
T 4b93_B 68 RLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNK 147 (269)
T ss_dssp -------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC
T ss_pred HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCC
Confidence 3444455 88899999999999820 122233444444444444445555555555
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhc
Q 008477 62 RDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLG 138 (564)
Q Consensus 62 ~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A 138 (564)
+|..|+||||+|+..|+.+++++|+++|++++..+..|.| +|+|+. +.+++++|+++|++++..+ ..|.||||+|
T Consensus 148 ~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d--~~G~TpL~~A 225 (269)
T 4b93_B 148 KDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLN--KRQRTAVDCA 225 (269)
T ss_dssp CCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCC--TTSCCSGGGS
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcC--CCCCCHHHHH
Confidence 5666666666666666666666666666666666666665 555555 5666666666666666555 5566666666
Q ss_pred cccc
Q 008477 139 CGAN 142 (564)
Q Consensus 139 ~~~~ 142 (564)
++.+
T Consensus 226 ~~~~ 229 (269)
T 4b93_B 226 EQNS 229 (269)
T ss_dssp CTTC
T ss_pred HhCC
Confidence 5544
No 33
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.77 E-value=4.2e-18 Score=154.44 Aligned_cols=125 Identities=25% Similarity=0.281 Sum_probs=114.7
Q ss_pred hhHHhhcC--CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 008477 7 STIDAELD--EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 7 ~~l~~~~~--g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
..+...++ +.+++..+..|.||| |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus 22 ~~v~~ll~~~~~~~~~~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 93 (165)
T 3twr_A 22 ETVKKLCTVQSVNCRDIEGRQSTPL--------HFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAEL 93 (165)
T ss_dssp HHHHHHCCTTTTTCCCTTTTCCCHH--------HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCCCccccccCCCCHH--------HHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHH
Confidence 44555565 667888899999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhcccc
Q 008477 85 LLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGA 141 (564)
Q Consensus 85 Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~ 141 (564)
|+++|++++..|..|.| +|+|+. +.+++++|+++|++++..+ ..|.||+|+|+.+
T Consensus 94 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~g~t~l~~a~~~ 151 (165)
T 3twr_A 94 LVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN--RDGNTPLDLVKDG 151 (165)
T ss_dssp HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCTGGGSCTT
T ss_pred HHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC--CCCCChhHhHhcC
Confidence 99999999999999998 788888 8999999999999999877 8999999998873
No 34
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.77 E-value=2.7e-18 Score=156.86 Aligned_cols=129 Identities=21% Similarity=0.233 Sum_probs=118.4
Q ss_pred hhhHHhhcC-CCC-CCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHH
Q 008477 6 QSTIDAELD-EID-LDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAAR 83 (564)
Q Consensus 6 ~~~l~~~~~-g~~-v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~ 83 (564)
...+...++ |.+ ++.+|..|+||| |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus 15 ~~~v~~ll~~~~~~~~~~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 86 (172)
T 3v30_A 15 LDQLKEHLRKGDNLVNKPDERGFTPL--------IWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG 86 (172)
T ss_dssp HHHHHHHHTTCSGGGGCCCTTSCCHH--------HHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHcCcccccCCCCCCCCHH--------HHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHH
Confidence 345566666 555 899999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 84 MLLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 84 ~Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
+|+++|++++..|..|.| +|+|+. +.+++++|+++|++++..+ ..|.||+|+|+..++.
T Consensus 87 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~g~t~l~~A~~~~~~ 148 (172)
T 3v30_A 87 LLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEA--DSGYTPMDLAVALGYR 148 (172)
T ss_dssp HHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHHTCH
T ss_pred HHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC--CCCCCHHHHHHHhCcH
Confidence 999999999999999998 788888 8999999999999998877 7899999999998884
No 35
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.76 E-value=2.4e-18 Score=155.44 Aligned_cols=128 Identities=22% Similarity=0.187 Sum_probs=117.5
Q ss_pred hhhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 008477 6 QSTIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 6 ~~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
...+...++ |++++.+|..|+||| |+|+. |+.+++++|++.|++++.+|..|+||||+|+..|+.+++++
T Consensus 18 ~~~v~~Ll~~~~~~~~~~~~g~t~L--------~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 88 (162)
T 1ihb_A 18 LEQLTSLLQNNVNVNAQNGFGRTAL--------QVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQT 88 (162)
T ss_dssp HHHHHHHTTSCCCTTCCCTTSCCHH--------HHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhCCCCccccCccCccHH--------HHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 355666776 999999999999999 99999 99999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCC-CCCCccccccccchhccccccc
Q 008477 85 LLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARP-PPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 85 Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~-~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
|+++|++++..|..|.| +|+|+. +.+++++|+++|++. +..+ ..|.||+|+|+..++.
T Consensus 89 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--~~g~t~l~~A~~~~~~ 150 (162)
T 1ihb_A 89 LLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRN--HKGDTACDLARLYGRN 150 (162)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCC--TTSCCHHHHHHHTTCH
T ss_pred HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcC--CCCCcHHHHHHHcCCH
Confidence 99999999999999998 788888 899999999999974 6655 7899999999998874
No 36
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.76 E-value=1.9e-18 Score=160.95 Aligned_cols=128 Identities=22% Similarity=0.241 Sum_probs=107.0
Q ss_pred hhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 008477 7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML 85 (564)
Q Consensus 7 ~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~L 85 (564)
..+...++ |++++.+|..|.||| |+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|
T Consensus 49 ~~v~~Ll~~~~~~~~~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 120 (192)
T 2rfm_A 49 NAIDKLVENFDKLEDKDIEGSTAL--------IWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFL 120 (192)
T ss_dssp GGHHHHHHHHCCTTCCCTTSCCHH--------HHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhccccccccccCccHH--------HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Confidence 34444554 788888888888888 889988999999988888888888888889999999888899999988
Q ss_pred HhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 86 LESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 86 l~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
+++|++++..|..|.| +|+|+. +.+++++|+++|++++..+ ..|.||+|+|+..++.
T Consensus 121 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~g~t~l~~A~~~~~~ 180 (192)
T 2rfm_A 121 LEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARD--LTGLTAEASARIFGRQ 180 (192)
T ss_dssp HHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBC--TTSCBHHHHHHHTTCH
T ss_pred HHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC--CCCCCHHHHHHHhCcH
Confidence 8888888888888887 677777 7888888888888888766 7788999888887764
No 37
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.75 E-value=2.1e-18 Score=170.05 Aligned_cols=110 Identities=22% Similarity=0.268 Sum_probs=86.0
Q ss_pred CChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCccCCCCc-hHHHHc--hH
Q 008477 33 PNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NL 109 (564)
Q Consensus 33 ~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t-l~~aa~--~~ 109 (564)
+.++||+|+..|+.+++++|++.|++++.++..|.||+|+|+..++.+++++|+++|++++..|..|.| +|+|+. +.
T Consensus 86 G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~ 165 (269)
T 4b93_B 86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHH 165 (269)
T ss_dssp SCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCG
T ss_pred CCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence 456788888888888888888888888888878888888888888888888888888888888888876 677776 67
Q ss_pred HHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 110 KVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 110 ~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
+++++|+++|++++..+ ..|.||||+|+..++.
T Consensus 166 ~~v~~Ll~~gadvn~~~--~~g~t~Lh~A~~~g~~ 198 (269)
T 4b93_B 166 ELVALLLQHGASINASN--NKGNTALHEAVIEKHV 198 (269)
T ss_dssp GGHHHHHHTTCCTTCBC--TTSCBHHHHHHHTTCH
T ss_pred HHHHHHHHCCCCCCccc--cCCCcHHHHHHHcCCH
Confidence 77888888888777755 6788888888877764
No 38
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.74 E-value=4.5e-18 Score=171.33 Aligned_cols=124 Identities=20% Similarity=0.259 Sum_probs=108.0
Q ss_pred CCCCCeEEEecCeeechhhHhhcccChhHHHhccccccccccceEEcCCCCHHHHHHHhhhHccCCccCCcccHHHHHHH
Q 008477 168 SFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDLVKI 247 (564)
Q Consensus 168 ~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~l~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~~~~~ll~~ 247 (564)
+.++||+|.++|++|+|||.||++||+||++||.+++.|+...+|.++++++++|+.+|+|+|||.++++.+++.+++.+
T Consensus 172 ~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~ll~~ 251 (312)
T 3hqi_A 172 SRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAA 251 (312)
T ss_dssp TCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred CCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhcHHHHHHHHH----------HHHHHHHHHHHcCcHHHHHHHHHHHhhcCC
Q 008477 248 CKVCKCESLQRIIE----------KELIHQKYAEYKALRDVDNSQKRFILQGSA 291 (564)
Q Consensus 248 a~~c~~~~L~~~l~----------~~l~~~~~a~~~~~~~L~~~~~~~i~~~~~ 291 (564)
|+.++++.|...++ +++.++.+|+.+++..|.+.|.+||..||.
T Consensus 252 A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~ 305 (312)
T 3hqi_A 252 ADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHAT 305 (312)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred HHHhCHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 96655555554433 689999999999999999999999999986
No 39
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.74 E-value=8.6e-18 Score=150.79 Aligned_cols=125 Identities=21% Similarity=0.147 Sum_probs=113.7
Q ss_pred hHHhhcC--CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 008477 8 TIDAELD--EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML 85 (564)
Q Consensus 8 ~l~~~~~--g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~L 85 (564)
.+...++ +.+++..|..|.||| |+ +..|+.++++.|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus 17 ~v~~ll~~~~~~~~~~~~~g~t~L--------~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 87 (156)
T 1bd8_A 17 EVRRLLHRELVHPDALNRFGKTAL--------QV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVL 87 (156)
T ss_dssp HHHHHHHTTCCCTTCCCTTSCCHH--------HH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhCcCccccCCCCCcHH--------HH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence 3444443 568999999999999 99 999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 86 LESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 86 l~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
+++|++++..|..|.| +|+|+. +.+++++|+++ ++++..+ ..|.||+|+|+..++.
T Consensus 88 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~--~~g~t~l~~A~~~~~~ 146 (156)
T 1bd8_A 88 VEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRD--ARGLTPLELALQRGAQ 146 (156)
T ss_dssp HHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCC--TTSCCHHHHHHHSCCH
T ss_pred HHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcC--CCCCCHHHHHHHcCcH
Confidence 9999999999999998 788888 89999999998 8887766 7899999999988874
No 40
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.74 E-value=4.7e-18 Score=146.31 Aligned_cols=112 Identities=21% Similarity=0.141 Sum_probs=101.5
Q ss_pred CCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCccCCCCc
Q 008477 22 DFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR 101 (564)
Q Consensus 22 d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t 101 (564)
+..|.||| |+|+..|+.++++.|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++..|..|.|
T Consensus 4 ~~~~~~~l--------~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t 75 (123)
T 3aaa_C 4 GSMCDKEF--------MWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHIT 75 (123)
T ss_dssp ---CHHHH--------HHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCC
T ss_pred ccccchHH--------HHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCC
Confidence 45566777 9999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhcccccc
Q 008477 102 -CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR 143 (564)
Q Consensus 102 -l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~ 143 (564)
+|+|+. +.+++++|+++|++++..+ ..|.||+|+|+..+.
T Consensus 76 pL~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~g~t~l~~A~~~~~ 118 (123)
T 3aaa_C 76 PLLSAVYEGHVSCVKLLLSKGADKTVKG--PDGLTAFEATDNQAI 118 (123)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHCCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcC--CCCCCHHHHhCCHHH
Confidence 788888 8999999999999998877 889999999965443
No 41
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.73 E-value=9.3e-18 Score=141.44 Aligned_cols=87 Identities=22% Similarity=0.309 Sum_probs=72.6
Q ss_pred CCCCCCeEEEecC----eeechhhHhhcccChhHHHhccccccccccceEEcCCCCHHHHHHHhhhHccCCccCCcccHH
Q 008477 167 DSFPPDVVFYVQG----RPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDME 242 (564)
Q Consensus 167 ~~~~~Dv~~~v~~----~~~~~Hk~iL~a~S~~f~~l~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~~~~ 242 (564)
++.+|||+|.+++ +.|+|||.||+++|+||++||.++|.|+. ..|.++++++++|+.+|+|+|||.++++.+++.
T Consensus 5 ~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~~~~ 83 (109)
T 2vkp_A 5 NELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEADTVL 83 (109)
T ss_dssp CCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCTTTHH
T ss_pred CCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCHHHHH
Confidence 4677899999988 89999999999999999999999999988 899999999999999999999999999998888
Q ss_pred HHHHHHhHhcHH
Q 008477 243 DLVKICKVCKCE 254 (564)
Q Consensus 243 ~ll~~a~~c~~~ 254 (564)
+++.+|+.++++
T Consensus 84 ~ll~~A~~~~~~ 95 (109)
T 2vkp_A 84 ATLYAAKKYIVP 95 (109)
T ss_dssp HHHHHHHHTTCH
T ss_pred HHHHHHHHhCcH
Confidence 777777555333
No 42
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.73 E-value=2.6e-18 Score=152.73 Aligned_cols=112 Identities=21% Similarity=0.271 Sum_probs=84.6
Q ss_pred CCCCCeEEEecCeeechhhHhhcccChhHHHhccccccccccceEEcCCCCHHHHHHHhhhHccCCccCCcccHHHHHHH
Q 008477 168 SFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDLVKI 247 (564)
Q Consensus 168 ~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~l~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~~~~~ll~~ 247 (564)
+.++||+|.++|+.|+|||.||+++|+||++||.+++.++....|.++++++++|+.+++|+|||.++++.+++.+++.+
T Consensus 23 ~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~ 102 (145)
T 4eoz_A 23 SRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAA 102 (145)
T ss_dssp TCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTHHHHHHH
T ss_pred CCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCccCCcHHHHHHHHHH
Confidence 34579999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HhHhcHHHHHHHHH----------HHHHHHHHHHHcCcHHHH
Q 008477 248 CKVCKCESLQRIIE----------KELIHQKYAEYKALRDVD 279 (564)
Q Consensus 248 a~~c~~~~L~~~l~----------~~l~~~~~a~~~~~~~L~ 279 (564)
|+.++++.|.+.+. ||+.++.+|+.|++..|.
T Consensus 103 A~~~~~~~l~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~Lk 144 (145)
T 4eoz_A 103 ADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLK 144 (145)
T ss_dssp HHHTTCHHHHHHHHCC--------------------------
T ss_pred HHHhCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHhc
Confidence 97666555555433 688899999999887765
No 43
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.72 E-value=3.6e-18 Score=158.54 Aligned_cols=119 Identities=11% Similarity=0.102 Sum_probs=106.0
Q ss_pred CCCCCC-CCCCCCCCCCCChhHHHHHhcCCH----HHHHHHHHcCCCccccCCCCCcHHHHHHHcCC------HHHHHHH
Q 008477 17 DLDASD-FSSSVPLKKVPNGDVFEASRAGDV----DRLRYILESGVNVNARDQWDSVALYYACLAGH------LDAARML 85 (564)
Q Consensus 17 ~v~~~d-~~g~tpL~~~~~~~l~~Aa~~g~~----~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~------~~~v~~L 85 (564)
+++.++ ..|+||| |+|+..|+. +++++|+++|+++|.+|..|+||||+|+..|+ .+++++|
T Consensus 29 ~~~~~~~~~g~T~L--------h~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~L 100 (186)
T 3t8k_A 29 GYEDKESVLKSNIL--------YDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIF 100 (186)
T ss_dssp SSSCHHHHHTTTHH--------HHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CcccccccCCCCHH--------HHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHH
Confidence 355666 7899999 999999985 48999999999999999999999999999987 6789999
Q ss_pred HhCCCCCCCccCCCC-c-hHHHHc-------hHHHHHHHHh-ccCCCCCCCccccccccchhccccccch
Q 008477 86 LESGAICSEHTFDGD-R-CHYAAL-------NLKVRKLLKA-YEARPPPLGPLQAALRDTFLGCGANRQF 145 (564)
Q Consensus 86 l~~ga~~~~~d~~g~-t-l~~aa~-------~~~i~~lLl~-~~~~~~~~~~~~~g~t~lh~A~~~~~~~ 145 (564)
+++|++++.+|..|. | +|+|+. ..+++++|+. +|++++..+ ..|.||||+|++.++..
T Consensus 101 l~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d--~~G~TpL~~A~~~~~~~ 168 (186)
T 3t8k_A 101 LEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKD--KWGLTALEFVKRCQKPI 168 (186)
T ss_dssp HHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCC--TTSCCHHHHHHTTTCHH
T ss_pred HHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccC--CCCCCHHHHHHHcCCHH
Confidence 999999999999999 6 677776 2468999999 999999988 89999999999988853
No 44
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.72 E-value=2.1e-17 Score=158.45 Aligned_cols=130 Identities=15% Similarity=0.111 Sum_probs=117.0
Q ss_pred hhhHHhhcC--CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCc-----cccCCCCCcHHHHHHHcCC
Q 008477 6 QSTIDAELD--EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNV-----NARDQWDSVALYYACLAGH 78 (564)
Q Consensus 6 ~~~l~~~~~--g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~-----n~~d~~g~TpL~~A~~~g~ 78 (564)
...+...++ |++++.+|..|+||| |+|+..|+.+++++|++.|+++ +..|..|+||||+|+..|+
T Consensus 16 ~~~v~~Ll~~~g~~~~~~~~~g~t~L--------~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~ 87 (232)
T 2rfa_A 16 VQALSKLLKFEGCEVHQRGAMGETAL--------HIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQN 87 (232)
T ss_dssp HHHHHHHHTTTCSCTTCCCTTSCCHH--------HHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCcccCCCCCCCHH--------HHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCC
Confidence 345556664 899999999999999 9999999999999999999887 6778899999999999999
Q ss_pred HHHHHHHHhCCCCCCCccC-------------CCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccc
Q 008477 79 LDAARMLLESGAICSEHTF-------------DGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGAN 142 (564)
Q Consensus 79 ~~~v~~Ll~~ga~~~~~d~-------------~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~ 142 (564)
.+++++|+++|++++..+. .|.| +|+|+. +.+++++|+++|++++..+ ..|.||||+|+..+
T Consensus 88 ~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d--~~g~t~L~~A~~~~ 165 (232)
T 2rfa_A 88 VNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQD--SLGNTVLHILILQP 165 (232)
T ss_dssp HHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHTCS
T ss_pred HHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC--CCCCCHHHHHHHcC
Confidence 9999999999999998765 6777 888888 8999999999999999877 88999999999988
Q ss_pred cch
Q 008477 143 RQF 145 (564)
Q Consensus 143 ~~~ 145 (564)
+..
T Consensus 166 ~~~ 168 (232)
T 2rfa_A 166 NKT 168 (232)
T ss_dssp CHH
T ss_pred ChH
Confidence 753
No 45
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.72 E-value=6.7e-18 Score=148.14 Aligned_cols=113 Identities=27% Similarity=0.383 Sum_probs=104.1
Q ss_pred CCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCccCCCCc
Q 008477 22 DFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR 101 (564)
Q Consensus 22 d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t 101 (564)
...|.||| |+|+..|+.++++.|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++..|..|.|
T Consensus 11 ~~~~~t~l--------~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t 82 (136)
T 2jab_A 11 GSDLGKKL--------LEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFT 82 (136)
T ss_dssp -CHHHHHH--------HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred cccccHHH--------HHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCC
Confidence 34456667 9999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 102 -CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 102 -l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
+|+|+. +.+++++|+++|++++..+ ..|.||+|+|+..++.
T Consensus 83 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~g~tpl~~A~~~~~~ 126 (136)
T 2jab_A 83 PLHLAAFIGHLEIAEVLLKHGADVNAQD--KFGKTAFDISIGNGNE 126 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCcCcC--CCCCCHHHHHHHCCCH
Confidence 788888 8999999999999998877 8899999999988774
No 46
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.71 E-value=2.1e-17 Score=161.04 Aligned_cols=104 Identities=22% Similarity=0.148 Sum_probs=55.3
Q ss_pred HHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCccCCCCc-hHHHHc--hHHHHHH
Q 008477 38 FEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKVRKL 114 (564)
Q Consensus 38 ~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i~~l 114 (564)
|+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++..|..|.| +|+|+. +.+++++
T Consensus 129 ~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~ 208 (253)
T 1yyh_A 129 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 208 (253)
T ss_dssp HHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555555555554 444444 4555555
Q ss_pred HHhccCCCCCCCccccccccchhcccccc
Q 008477 115 LKAYEARPPPLGPLQAALRDTFLGCGANR 143 (564)
Q Consensus 115 Ll~~~~~~~~~~~~~~g~t~lh~A~~~~~ 143 (564)
|+++|++++..+ ..|.||+|+|++.++
T Consensus 209 Ll~~ga~~~~~d--~~g~tpl~~A~~~g~ 235 (253)
T 1yyh_A 209 LLDHFANRDITD--HMDRLPRDIAQERMH 235 (253)
T ss_dssp HHHTTCCTTCCC--TTCCCHHHHHHHTTC
T ss_pred HHHcCCCccccc--cCCCCHHHHHHHcCC
Confidence 555555555444 445555555555554
No 47
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.71 E-value=1.6e-17 Score=142.65 Aligned_cols=93 Identities=23% Similarity=0.420 Sum_probs=78.5
Q ss_pred CCCCCeEEEecCeeechhhHhhcccChhHHHhccccccccccceEEcCCCCHHHHHHHhhhHccCCccCCcccHHHHHHH
Q 008477 168 SFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDLVKI 247 (564)
Q Consensus 168 ~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~l~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~~~~~ll~~ 247 (564)
+.++||+|.++|+.|+|||.||+++|+||++||.++|.++....|.++++++++|+.+++|+|||.+.++.+++.+++.+
T Consensus 23 ~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~~~~~~~~ll~~ 102 (120)
T 2if5_A 23 GLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSA 102 (120)
T ss_dssp TCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCCCCCGGGHHHHHHH
T ss_pred CCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Confidence 45679999999999999999999999999999999999998899999999999999999999999999999998888888
Q ss_pred HhHhcHHHHHHHH
Q 008477 248 CKVCKCESLQRII 260 (564)
Q Consensus 248 a~~c~~~~L~~~l 260 (564)
|+.++++.|.+.+
T Consensus 103 A~~~~i~~L~~~C 115 (120)
T 2if5_A 103 ARLLEIPAVSHVC 115 (120)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHHhCCHHHHHHH
Confidence 8766555554443
No 48
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.71 E-value=1.1e-16 Score=154.11 Aligned_cols=128 Identities=21% Similarity=0.217 Sum_probs=87.0
Q ss_pred hhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCC------ccccCCCCCcHHHHHHHcCCH
Q 008477 7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVN------VNARDQWDSVALYYACLAGHL 79 (564)
Q Consensus 7 ~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~------~n~~d~~g~TpL~~A~~~g~~ 79 (564)
..+...++ |++++.+|..|.||| |+|+..|+.+++++|++.|++ ++..+..|+||||+|+..|+.
T Consensus 59 ~~v~~Ll~~g~~~~~~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~ 130 (236)
T 1ikn_D 59 EIAEALLGAGCDPELRDFRGNTPL--------HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYL 130 (236)
T ss_dssp HHHHCCCSCCCCSCCCCTTCCCHH--------HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCCCCCcCCCCCCHH--------HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCH
Confidence 34444444 666666666777777 777777777777777776654 455666677777777777777
Q ss_pred HHHHHHHhCCCCCCCccC-CCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 80 DAARMLLESGAICSEHTF-DGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 80 ~~v~~Ll~~ga~~~~~d~-~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
+++++|+++|++++..+. .|.| +|+|+. +.+++++|+++|++++..+ ..|.||+|+|+..++.
T Consensus 131 ~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~g~tpl~~A~~~~~~ 197 (236)
T 1ikn_D 131 GIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT--YQGYSPYQLTWGRPST 197 (236)
T ss_dssp HHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCC--TTCCCGGGGCTTSSCH
T ss_pred HHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccc--CCCCCHHHHHHccCch
Confidence 777777777777777665 6665 566666 6677777777777766655 6677777777766664
No 49
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.71 E-value=1e-17 Score=155.92 Aligned_cols=118 Identities=18% Similarity=0.172 Sum_probs=111.3
Q ss_pred CCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcc
Q 008477 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96 (564)
Q Consensus 17 ~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d 96 (564)
.+|.+|..|+||| |+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++..|
T Consensus 27 ~~n~~d~~g~t~L--------~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 98 (192)
T 2rfm_A 27 LRNYRDSYNRTPL--------MVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKD 98 (192)
T ss_dssp HHTCCCTTCCCHH--------HHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC
T ss_pred HHhCcCCCCCCHH--------HHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence 3678999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 97 FDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 97 ~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
..|.| +|+|+. +.+++++|+++|++++..+ ..|.||||+|+..++.
T Consensus 99 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~ 147 (192)
T 2rfm_A 99 FSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRN--LEGETPLIVASKYGRS 147 (192)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCC--TTCCCHHHHHHHHTCH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC--CCCCCHHHHHHHcCCH
Confidence 99998 788888 8999999999999998877 8899999999998874
No 50
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.71 E-value=1.9e-17 Score=148.87 Aligned_cols=110 Identities=18% Similarity=0.147 Sum_probs=46.8
Q ss_pred CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCc-HHHHHHHcCCHHHHHHHHhCCCCCC
Q 008477 15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSV-ALYYACLAGHLDAARMLLESGAICS 93 (564)
Q Consensus 15 g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~T-pL~~A~~~g~~~~v~~Ll~~ga~~~ 93 (564)
|+++|.+|..|+||| |+|+ .|+.+++++|+++|++++.+|..|+| |||+|+..|+.+++++|+++|++++
T Consensus 35 g~~~~~~~~~g~t~L--------~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~ 105 (156)
T 1bi7_B 35 GANPNAPNSYGRRPI--------QVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD 105 (156)
T ss_dssp TCCTTCCCSSSCCTT--------TSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSS
T ss_pred CCCCCCCCCCCCCHH--------HHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCc
Confidence 444444444555555 4443 44455555555545555544444444 5555555555555555554455555
Q ss_pred CccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccc
Q 008477 94 EHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDT 135 (564)
Q Consensus 94 ~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~l 135 (564)
..|..|.| +|+|+. +.+++++|+++|++++..+ ..|.||.
T Consensus 106 ~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~g~t~~ 148 (156)
T 1bi7_B 106 VRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSN--HARIDAA 148 (156)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred ccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccC--cCcCccc
Confidence 44444444 344444 4444455554444444433 3344443
No 51
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.71 E-value=5.7e-17 Score=154.34 Aligned_cols=169 Identities=14% Similarity=0.053 Sum_probs=125.5
Q ss_pred hHHhhcC-CCCCCCC-CCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 008477 8 TIDAELD-EIDLDAS-DFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML 85 (564)
Q Consensus 8 ~l~~~~~-g~~v~~~-d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~L 85 (564)
.+...++ |++++.. |..|.||| |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus 6 ~i~~Ll~~g~~~~~~~d~~g~t~L--------~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 77 (223)
T 2f8y_A 6 VISDFIYQGASLHNQTDRTGETAL--------HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQIL 77 (223)
T ss_dssp CEETTEETTCCTTCCCTTTCCCHH--------HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCCcccccCCCCCchH--------HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 3444555 8888765 88899999 999999999999999999999999999999999999999999999999
Q ss_pred HhCCC-CCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccchhhhhHHhhcccccccC
Q 008477 86 LESGA-ICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVVLGISGVTSN 161 (564)
Q Consensus 86 l~~ga-~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~~l~~~~~~~~~~~l~~~ 161 (564)
+++|+ +++..+..|.| +|+|+. +.+++++|+++|++++..+ ..|.||||.|+..++....+.....
T Consensus 78 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~-------- 147 (223)
T 2f8y_A 78 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD--DLGKSALHWAAAVNNVDAAVVLLKN-------- 147 (223)
T ss_dssp HHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBC--TTSCBHHHHHHHTTCHHHHHHHHHT--------
T ss_pred HHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcC--CCCCcHHHHHHHcCCHHHHHHHHHc--------
Confidence 98886 88888888887 777777 7889999999988888766 7789999999887774322222111
Q ss_pred CCCCCCCCCCCeEEEecCeeechhhHhhcccChhHHHhccc
Q 008477 162 GASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFET 202 (564)
Q Consensus 162 ~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~l~~~ 202 (564)
+ .|+...-....-+.|-++....-..++-++..
T Consensus 148 g--------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 180 (223)
T 2f8y_A 148 G--------ANKDMQNNREETPLFLAAREGSYETAKVLLDH 180 (223)
T ss_dssp T--------CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred C--------CCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence 1 01111112334567777666666666666543
No 52
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.71 E-value=4.1e-17 Score=156.21 Aligned_cols=128 Identities=27% Similarity=0.320 Sum_probs=102.9
Q ss_pred hhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 008477 7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML 85 (564)
Q Consensus 7 ~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~L 85 (564)
..+...++ |++++.+|..|+||| |+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|
T Consensus 54 ~~v~~Ll~~g~~~~~~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 125 (231)
T 3aji_A 54 EIVEFLLQLGVPVNDKDDAGWSPL--------HIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125 (231)
T ss_dssp HHHHHHHHTTCCSCCCCTTSCCHH--------HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcCCCCCCHH--------HHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 44555555 888888888888888 888888888888888888888888888888888888888888888888
Q ss_pred HhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 86 LESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 86 l~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
+++|++++..+..|.| +|+|+. +.+++++|+++|++++..+ ..|.||+|+|+..++.
T Consensus 126 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~ 185 (231)
T 3aji_A 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD--TEGNTPLHLACDEERV 185 (231)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC--TTSCCHHHHHHHTTCH
T ss_pred HHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccC--CCCCCHHHHHHHCCCH
Confidence 8888888888888876 677776 7788888888888877766 6788888888877774
No 53
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.71 E-value=4.3e-17 Score=156.09 Aligned_cols=128 Identities=22% Similarity=0.230 Sum_probs=113.5
Q ss_pred hhHHhhcC--CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 008477 7 STIDAELD--EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 7 ~~l~~~~~--g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
..+...++ +..++..|..|.||| |+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++
T Consensus 20 ~~v~~ll~~~~~~~~~~~~~g~t~L--------~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 91 (231)
T 3aji_A 20 DELKERILADKSLATRTDQDSRTAL--------HWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKA 91 (231)
T ss_dssp HHHHHHHHHCGGGGGCCCTTSCCHH--------HHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhchhhhhcCCCCCCCHH--------HHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHH
Confidence 34444444 344778899999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 85 LLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 85 Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
|+++|++++..|..|.| +|+|+. +.+++++|+++|++++..+ ..|.||+|.|+..++.
T Consensus 92 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~ 152 (231)
T 3aji_A 92 LLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD--HYDATAMHRAAAKGNL 152 (231)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHHTCH
T ss_pred HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC--CCCCcHHHHHHHcCCH
Confidence 99999999999999987 788887 8899999999999988866 7899999999988874
No 54
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.71 E-value=3.5e-17 Score=141.92 Aligned_cols=90 Identities=20% Similarity=0.294 Sum_probs=79.5
Q ss_pred CCCCCeEEEecCeeechhhHhhcccChhHHHhccccccccccceEEc-CCCCHHHHHHHhhhHccCCccCCcccHHHHHH
Q 008477 168 SFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSR-EKLSYPALYGLIHFFYSDRLEIAVDDMEDLVK 246 (564)
Q Consensus 168 ~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~l~~~~~~e~~~~~i~l-~~v~~~~~~~lL~ylYtg~~~i~~~~~~~ll~ 246 (564)
+.+|||+|.++|+.|+|||.||+++|+||++||.+++.+ ....|.+ +++++++|+.+|+|+|||.+.++.+++.+++.
T Consensus 27 ~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~ 105 (127)
T 1r29_A 27 DILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMA 105 (127)
T ss_dssp TCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTTTHHHHHH
T ss_pred CCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCCCCCHHHHHHHHHHHcCCCcCcCHHHHHHHHH
Confidence 456799999999999999999999999999999999988 7788999 99999999999999999999999998888888
Q ss_pred HHhHhcHHHHHH
Q 008477 247 ICKVCKCESLQR 258 (564)
Q Consensus 247 ~a~~c~~~~L~~ 258 (564)
+|+.++++.|.+
T Consensus 106 ~A~~~~i~~L~~ 117 (127)
T 1r29_A 106 TAMYLQMEHVVD 117 (127)
T ss_dssp HHHHTTCHHHHH
T ss_pred HHHHhCCHHHHH
Confidence 776664444333
No 55
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.71 E-value=7.2e-17 Score=154.09 Aligned_cols=113 Identities=18% Similarity=0.167 Sum_probs=56.5
Q ss_pred CCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcC--CCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCccCC
Q 008477 21 SDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESG--VNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFD 98 (564)
Q Consensus 21 ~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g--~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~ 98 (564)
.+..|.||| |+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|+++|++++..|..
T Consensus 68 ~~~~g~t~L--------~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 139 (228)
T 2dzn_A 68 PDDSGWTPF--------HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKF 139 (228)
T ss_dssp CCTTSCCHH--------HHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT
T ss_pred CCCCCCCHH--------HHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCC
Confidence 444555555 5555555555555555544 444445555555555555555555555555555555555555
Q ss_pred CCc-hHHHHc--hHHHHHHHHhcc-CCCCCCCccccccccchhcccccc
Q 008477 99 GDR-CHYAAL--NLKVRKLLKAYE-ARPPPLGPLQAALRDTFLGCGANR 143 (564)
Q Consensus 99 g~t-l~~aa~--~~~i~~lLl~~~-~~~~~~~~~~~g~t~lh~A~~~~~ 143 (564)
|.| +|+|+. +.+++++|+++| .+++..+ ..|.||||+|+..++
T Consensus 140 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d--~~g~t~L~~A~~~~~ 186 (228)
T 2dzn_A 140 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQD--KQGWTPLFHALAEGH 186 (228)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCC--TTSCCHHHHHHHTTC
T ss_pred CCCHHHHHHHcCCHHHHHHHHhcCcccccCcC--CCCCCHHHHHHHcCC
Confidence 544 444444 444555555554 4444433 445555555554444
No 56
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.70 E-value=5.8e-17 Score=151.67 Aligned_cols=127 Identities=17% Similarity=0.199 Sum_probs=99.2
Q ss_pred hhHHhhcC--CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 008477 7 STIDAELD--EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 7 ~~l~~~~~--g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
..+...+. +.++|..|..|.||| |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus 19 ~~v~~ll~~~~~~~~~~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 90 (201)
T 3hra_A 19 KKVKEILQDTTYQVDEVDTEGNTPL--------NIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAY 90 (201)
T ss_dssp HHHHHHHTCTTCCTTCCCTTSCCHH--------HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCCCCHH--------HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 34445554 447888888888888 88888888888888888888888888888888888888888888888
Q ss_pred HH-hCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhcc-CCCCCCCccccccccchhcccccc
Q 008477 85 LL-ESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYE-ARPPPLGPLQAALRDTFLGCGANR 143 (564)
Q Consensus 85 Ll-~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~-~~~~~~~~~~~g~t~lh~A~~~~~ 143 (564)
|+ ..+++++..+..|.| +|+|+. +.+++++|+++| .+++..+ ..|.||||.|+..+.
T Consensus 91 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--~~g~t~L~~A~~~~~ 152 (201)
T 3hra_A 91 MLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQN--DFGYTALIEAVGLRE 152 (201)
T ss_dssp HHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCC--TTSCCHHHHHHHSSC
T ss_pred HHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCC--CCCCCHHHHHHHhcc
Confidence 88 556788888888876 677777 778888888887 6777655 678888888886554
No 57
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.70 E-value=6.4e-17 Score=155.36 Aligned_cols=123 Identities=14% Similarity=0.038 Sum_probs=98.3
Q ss_pred CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC
Q 008477 15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE 94 (564)
Q Consensus 15 g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~ 94 (564)
|++++..+..+.+++ +.||+|+..|+.++++.|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus 8 ~~~~~~~~~~~~~~~-----t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~ 82 (229)
T 2vge_A 8 AGSPRKARRARLNPL-----VLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNS 82 (229)
T ss_dssp --CCCCCCCTTSCHH-----HHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred CCCCccccccccchh-----HHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 666665555444433 333999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhc--ccccc
Q 008477 95 HTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLG--CGANR 143 (564)
Q Consensus 95 ~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A--~~~~~ 143 (564)
.|..|.| +|+|+. +.+++++|+++|++++..+ ...|.||||+| +..++
T Consensus 83 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~-~~~g~tpL~~A~a~~~~~ 135 (229)
T 2vge_A 83 PDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT-LSDGATAFEKCDPYREGY 135 (229)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC-SSTTCCTGGGCCTTSTTH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc-CCCCCCHHHHHHHHhcCh
Confidence 9988887 788887 8889999999988887753 14788999998 66666
No 58
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.70 E-value=1.1e-16 Score=149.83 Aligned_cols=119 Identities=21% Similarity=0.212 Sum_probs=64.8
Q ss_pred CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHH-HcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCC
Q 008477 15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYIL-ESGVNVNARDQWDSVALYYACLAGHLDAARMLLESG-AIC 92 (564)
Q Consensus 15 g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll-~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g-a~~ 92 (564)
|++++.+|..|.||| |+|+..|+.+++++|+ ..+++++.+|..|.||||+|+..|+.+++++|+++| +++
T Consensus 62 g~~~~~~~~~g~t~l--------~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 133 (201)
T 3hra_A 62 GADINLQNSISDSPY--------LYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDI 133 (201)
T ss_dssp TCCTTCCCTTSCCHH--------HHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCT
T ss_pred CCCCCCCCCCCCCHH--------HHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence 555555555555555 5555555555555555 244455555555555555555555555555555555 555
Q ss_pred CCccCCCCc-hHHHHc--h-----HHHHHHHHhccCCCCCCCccccccccchhcccccc
Q 008477 93 SEHTFDGDR-CHYAAL--N-----LKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR 143 (564)
Q Consensus 93 ~~~d~~g~t-l~~aa~--~-----~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~ 143 (564)
+..|..|.| +|+|+. + .+++++|+++|++++..+ ..|.||+|+|+..++
T Consensus 134 ~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~--~~g~t~l~~A~~~~~ 190 (201)
T 3hra_A 134 DFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKD--NSGRTAMDYANQKGY 190 (201)
T ss_dssp TCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccC--CCCCCHHHHHHHcCC
Confidence 555555554 444443 2 455555555555555544 455555555555444
No 59
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.70 E-value=5.9e-17 Score=158.67 Aligned_cols=167 Identities=20% Similarity=0.234 Sum_probs=132.4
Q ss_pred hhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 008477 7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML 85 (564)
Q Consensus 7 ~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~L 85 (564)
..+...++ |+++|.+|..|.||| |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus 17 ~~v~~Ll~~g~~~~~~~~~g~t~L--------~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 88 (261)
T 2xai_A 17 LSLRNLISQGWAVNIITADHVSPL--------HEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL 88 (261)
T ss_dssp HHHHHHHHTTCCSSCCCTTCCCHH--------HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHH--------HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 45555665 899999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccchhhhhHHhhcccccccCC
Q 008477 86 LESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVVLGISGVTSNG 162 (564)
Q Consensus 86 l~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~~l~~~~~~~~~~~l~~~~ 162 (564)
+++|++++..+. |.| +|+|+. +.+++++|+++|++++..+ ..|.||||.|+..++....+.... .+
T Consensus 89 l~~g~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~--------~g 157 (261)
T 2xai_A 89 LQHGASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKI--SHLGTPLYLACENQQRACVKKLLE--------SG 157 (261)
T ss_dssp HHTTCCSSCSCT-TCCHHHHHHHTTCHHHHHHHHHTTCCTTCCB--TTTBCHHHHHHHTTCHHHHHHHHH--------HT
T ss_pred HHCCCCCCCCCC-CCCHHHHHHHcCcHHHHHHHHHcCCCCCcCC--CCCCCHHHHHHHhCCHHHHHHHHH--------cC
Confidence 999999986554 665 888888 8999999999999998866 889999999999887432222211 11
Q ss_pred CCCCCCCCCCeEEEecCeeechhhHhhcccChhHHHhcc
Q 008477 163 ASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFE 201 (564)
Q Consensus 163 ~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~l~~ 201 (564)
. |+.- -..+.-+.|.++...+.+..+-++.
T Consensus 158 ~--------~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~ 187 (261)
T 2xai_A 158 A--------DVNQ-GKGQDSPLHAVARTASEELACLLMD 187 (261)
T ss_dssp C--------CTTC-CBTTBCHHHHHHHHTCHHHHHHHHH
T ss_pred C--------CCCC-CCCCCChHHHHHHcCCHHHHHHHHH
Confidence 1 1110 1234457777776666555555554
No 60
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.70 E-value=8.7e-17 Score=160.30 Aligned_cols=133 Identities=18% Similarity=0.232 Sum_probs=115.5
Q ss_pred hhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCC---------------------
Q 008477 7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQ--------------------- 64 (564)
Q Consensus 7 ~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~--------------------- 64 (564)
..+...++ |+++|.+|..|+||| |+|+..|+.+++++|+++|++++..|.
T Consensus 87 ~~v~~Ll~~ga~~~~~~~~g~tpL--------~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l 158 (299)
T 1s70_B 87 DMVKFLVENGANINQPDNEGWIPL--------HAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158 (299)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHH--------HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCcHH--------HHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHH
Confidence 44555555 888888888888888 999999999999999999999876653
Q ss_pred ---------------------------------------CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCccCCCCc-hHH
Q 008477 65 ---------------------------------------WDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHY 104 (564)
Q Consensus 65 ---------------------------------------~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t-l~~ 104 (564)
.|.||||+|+..|+.+++++|+++|++++..|..|.| +|+
T Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~ 238 (299)
T 1s70_B 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHA 238 (299)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHH
T ss_pred HhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence 4678899999999999999999999999999999998 788
Q ss_pred HHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccchhhhh
Q 008477 105 AAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEA 149 (564)
Q Consensus 105 aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~~l~~~ 149 (564)
|+. +.+++++|+++|++++..+ ..|.||+|+|+++...++.+.
T Consensus 239 A~~~~~~~~v~~Ll~~gad~~~~d--~~g~t~l~~A~~~~~~~l~~l 283 (299)
T 1s70_B 239 AAHWGKEEACRILVENLCDMEAVN--KVGQTAFDVADEDILGYLEEL 283 (299)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCC--TTSCCTTTSCCSGGGHHHHHH
T ss_pred HHhcCCHHHHHHHHHcCCCCCCcC--CCCCCHHHHHHHHHHHHHHHH
Confidence 888 8999999999999999877 889999999998777655543
No 61
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.70 E-value=9.9e-17 Score=154.18 Aligned_cols=127 Identities=20% Similarity=0.296 Sum_probs=68.2
Q ss_pred hhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcC-CCccccCCCCCcHHHHHHHcCCHHHHHH
Q 008477 7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESG-VNVNARDQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 7 ~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g-~~~n~~d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
..+...++ |++++.++..|.||| |+|+..|+.+++++|++.| .+++..|..|+||||+|+..|+.+++++
T Consensus 58 ~~v~~Ll~~g~~~~~~~~~g~t~L--------~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 129 (237)
T 3b7b_A 58 EAVKYLIKAGALVDPKDAEGSTCL--------HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129 (237)
T ss_dssp HHHHHHHTTTCCCCCCCTTSCCHH--------HHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCCCcHH--------HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHH
Confidence 33444444 566666666666666 5555555555555555554 4555555555555555555555555555
Q ss_pred HHhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhcccccc
Q 008477 85 LLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR 143 (564)
Q Consensus 85 Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~ 143 (564)
|+++|++++..+..|.| +|+|+. +.+++++|+++|++++..+ ..|.||+|+|+..++
T Consensus 130 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~ 189 (237)
T 3b7b_A 130 LLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVN--IHGDSPLHIAARENR 189 (237)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCC--TTCCCHHHHHHHTTC
T ss_pred HHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcC--CCCCCHHHHHHHhCC
Confidence 55555555555555554 444444 4555555555555554444 445555555555444
No 62
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.70 E-value=6.6e-17 Score=161.19 Aligned_cols=128 Identities=23% Similarity=0.262 Sum_probs=110.9
Q ss_pred hhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 008477 7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML 85 (564)
Q Consensus 7 ~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~L 85 (564)
..+...++ |+++|..|..|.||| |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus 54 ~~v~~Ll~~g~~~~~~~~~g~t~L--------~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~L 125 (299)
T 1s70_B 54 EEVLRLLERGADINYANVDGLTAL--------HQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYL 125 (299)
T ss_dssp HHHHHHHHHCCCTTCBCTTCCBHH--------HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHcCCCCcccCCCCCCHH--------HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Confidence 45556666 999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCccCCCCc-------------------------------------------------------------hHH
Q 008477 86 LESGAICSEHTFDGDR-------------------------------------------------------------CHY 104 (564)
Q Consensus 86 l~~ga~~~~~d~~g~t-------------------------------------------------------------l~~ 104 (564)
+++|++++..|..|.| +|+
T Consensus 126 l~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~ 205 (299)
T 1s70_B 126 ISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHV 205 (299)
T ss_dssp HHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHH
T ss_pred HhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHH
Confidence 9999999987765543 455
Q ss_pred HHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 105 AAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 105 aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
|+. +.+++++|+++|++++..+ ..|.||||+|+..++.
T Consensus 206 A~~~g~~~~v~~Ll~~g~d~~~~d--~~g~tpL~~A~~~~~~ 245 (299)
T 1s70_B 206 AAAKGYTEVLKLLIQARYDVNIKD--YDGWTPLHAAAHWGKE 245 (299)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTCCC--TTCCCHHHHHHHTTCH
T ss_pred HHHCCcHHHHHHHHHcCCCCCCcC--CCCCcHHHHHHhcCCH
Confidence 555 6778888888888888766 7788888888887774
No 63
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.69 E-value=7e-17 Score=131.65 Aligned_cols=90 Identities=36% Similarity=0.521 Sum_probs=83.9
Q ss_pred CCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCccCCCCc-h
Q 008477 24 SSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-C 102 (564)
Q Consensus 24 ~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t-l 102 (564)
+|+||| |+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.| +
T Consensus 1 ~g~t~L--------~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l 72 (93)
T 1n0q_A 1 NGRTPL--------HLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 72 (93)
T ss_dssp --CCHH--------HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCCcHH--------HHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHH
Confidence 478888 9999999999999999999999999999999999999999999999999999999999999998 7
Q ss_pred HHHHc--hHHHHHHHHhccCC
Q 008477 103 HYAAL--NLKVRKLLKAYEAR 121 (564)
Q Consensus 103 ~~aa~--~~~i~~lLl~~~~~ 121 (564)
|+|+. +.+++++|+++|++
T Consensus 73 ~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 73 HLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHcCCC
Confidence 88887 89999999998864
No 64
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.69 E-value=5.5e-17 Score=158.08 Aligned_cols=119 Identities=18% Similarity=0.151 Sum_probs=61.3
Q ss_pred CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCC-CccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 008477 15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGV-NVNARDQWDSVALYYACLAGHLDAARMLLESGAICS 93 (564)
Q Consensus 15 g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~-~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~ 93 (564)
|++++.+|..|+||| |+|+..|+.+++++|++.|+ +++.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus 80 g~~~~~~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 151 (253)
T 1yyh_A 80 SADANIQDNMGRTPL--------HAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 151 (253)
T ss_dssp TCCTTCCCTTSCCHH--------HHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT
T ss_pred CCCCCCCCCCCCCHH--------HHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC
Confidence 444444444555555 55555555555555555443 445555555555555555555555555555555555
Q ss_pred CccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhcccccc
Q 008477 94 EHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR 143 (564)
Q Consensus 94 ~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~ 143 (564)
..|..|.| +|+|+. +.+++++|+++|++++..+ ..|.||||+|+..++
T Consensus 152 ~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~g~tpL~~A~~~~~ 202 (253)
T 1yyh_A 152 AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN--NREETPLFLAAREGS 202 (253)
T ss_dssp CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHHTC
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC--CCCCCHHHHHHHCCC
Confidence 55555554 444444 4555555555555555444 445555555555444
No 65
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.69 E-value=6.7e-17 Score=141.70 Aligned_cols=107 Identities=20% Similarity=0.148 Sum_probs=99.1
Q ss_pred hhhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCC-CCcHHHHHHHcCCHHHHH
Q 008477 6 QSTIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQW-DSVALYYACLAGHLDAAR 83 (564)
Q Consensus 6 ~~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~-g~TpL~~A~~~g~~~~v~ 83 (564)
...+...++ |++++.+|..|+||| |+|+. |+.+++++|+++|++++.+|.. |+||||+|+..|+.++++
T Consensus 25 ~~~v~~Ll~~g~~~~~~~~~g~t~L--------~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 95 (136)
T 1d9s_A 25 VETVRQLLEAGADPNALNRFGRRPI--------QVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLV 95 (136)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCTTT--------TTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHcCCCcCCcCCCCCCHH--------HHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHH
Confidence 345556666 999999999999999 99999 9999999999999999999999 999999999999999999
Q ss_pred HHHhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCC
Q 008477 84 MLLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEAR 121 (564)
Q Consensus 84 ~Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~ 121 (564)
+|+++|++++..|..|.| +|+|+. +.+++++|+++|++
T Consensus 96 ~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 96 VLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999999999998 788887 89999999999875
No 66
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.69 E-value=1.1e-16 Score=152.25 Aligned_cols=127 Identities=18% Similarity=0.152 Sum_probs=82.0
Q ss_pred hhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCC-CccccCCCCCcHHHHHHHcCCHHHHHH
Q 008477 7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGV-NVNARDQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 7 ~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~-~~n~~d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
..+...++ |++++.+|..|.||| |+|+..|+.+++++|++.|+ +++.++..|+||||+|+..|+.+++++
T Consensus 39 ~~v~~Ll~~g~~~~~~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 110 (223)
T 2f8y_A 39 DAAKRLLEASADANIQDNMGRTPL--------HAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLED 110 (223)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHH--------HHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCCCCCCHH--------HHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHH
Confidence 34444554 777777777777777 66666666666666666554 566666666666666666666666666
Q ss_pred HHhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhcccccc
Q 008477 85 LLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR 143 (564)
Q Consensus 85 Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~ 143 (564)
|+++|++++..|..|.| +|+|+. +.+++++|+++|++++..+ ..|.||+|+|+..++
T Consensus 111 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~ 170 (223)
T 2f8y_A 111 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN--NREETPLFLAAREGS 170 (223)
T ss_dssp HHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTCCCHHHHHHHHTC
T ss_pred HHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC--CCCcCHHHHHHHcCC
Confidence 66666666666666665 555555 5666666666666666544 556666666666555
No 67
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.69 E-value=5e-17 Score=156.45 Aligned_cols=121 Identities=19% Similarity=0.205 Sum_probs=110.6
Q ss_pred CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC---
Q 008477 15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAI--- 91 (564)
Q Consensus 15 g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~--- 91 (564)
|+++|.+|..|.||| |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 35 ~~~~~~~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~ 106 (236)
T 1ikn_D 35 LAFLNFQNNLQQTPL--------HLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 106 (236)
T ss_dssp CCCCCCCCTTCCCHH--------HHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSS
T ss_pred HHHhhccCCCCCCHH--------HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhH
Confidence 457999999999999 999999999999999999999999999999999999999999999999999986
Q ss_pred ---CCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccc-cccccchhccccccch
Q 008477 92 ---CSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQ-AALRDTFLGCGANRQF 145 (564)
Q Consensus 92 ---~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~-~g~t~lh~A~~~~~~~ 145 (564)
++..+..|.| +|+|+. +.+++++|+++|++++..+ . .|.||||+|+..++..
T Consensus 107 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~g~tpL~~A~~~~~~~ 165 (236)
T 1ikn_D 107 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE--PCNGRTALHLAVDLQNPD 165 (236)
T ss_dssp SCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC--TTTCCCHHHHHHHTTCHH
T ss_pred HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC--CCCCCCHHHHHHHcCCHH
Confidence 4667788887 788888 8999999999999998866 5 7999999999988753
No 68
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.69 E-value=1.1e-16 Score=154.03 Aligned_cols=104 Identities=18% Similarity=0.186 Sum_probs=51.6
Q ss_pred HHHHhcCCHHHHHHHHHcCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCccCCCCc-hHHHHc--hHHHHH
Q 008477 38 FEASRAGDVDRLRYILESGVNVNARD-QWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKVRK 113 (564)
Q Consensus 38 ~~Aa~~g~~~~v~~Ll~~g~~~n~~d-~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i~~ 113 (564)
|+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|+++|++++..|..|.| +|+|+. +.++++
T Consensus 121 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 200 (241)
T 1k1a_A 121 HVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVR 200 (241)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 55555555555555555555555444 44555555555555555555555555555555555544 444444 444555
Q ss_pred HHHhccCCCCCCCccccccccchhcccccc
Q 008477 114 LLKAYEARPPPLGPLQAALRDTFLGCGANR 143 (564)
Q Consensus 114 lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~ 143 (564)
+|+++|++++..+ ..|.||+|+|+..++
T Consensus 201 ~Ll~~ga~~~~~~--~~g~tpl~~A~~~~~ 228 (241)
T 1k1a_A 201 TLVRSGADSSLKN--CHNDTPLMVARSRRV 228 (241)
T ss_dssp HHHHTTCCTTCCC--TTSCCTTTTCSSHHH
T ss_pred HHHhcCCCCCCcC--CCCCCHHHHHHhcCc
Confidence 5555555444433 445555555544433
No 69
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.69 E-value=7.1e-17 Score=138.69 Aligned_cols=111 Identities=30% Similarity=0.415 Sum_probs=103.8
Q ss_pred CCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCccCCCCc-h
Q 008477 24 SSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-C 102 (564)
Q Consensus 24 ~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t-l 102 (564)
+|.||| |+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..|..|.| +
T Consensus 1 ~g~t~L--------~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l 72 (126)
T 1n0r_A 1 NGRTPL--------HLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 72 (126)
T ss_dssp CCCCHH--------HHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCccHH--------HHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHH
Confidence 478888 9999999999999999999999999999999999999999999999999999999999999998 7
Q ss_pred HHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 103 HYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 103 ~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
|+|+. +.+++++|+++|++++..+ ..|.||+|+|+..++.
T Consensus 73 ~~A~~~~~~~~~~~Ll~~g~~~~~~~--~~g~t~l~~A~~~~~~ 114 (126)
T 1n0r_A 73 HLAARNGHLEVVKLLLEAGADVNAKD--KNGRTPLHLAARNGHL 114 (126)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHcCCCCcccC--CCCCCHHHHHHHcCcH
Confidence 88887 8999999999999998876 7899999999987774
No 70
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.69 E-value=7.4e-17 Score=154.65 Aligned_cols=128 Identities=21% Similarity=0.260 Sum_probs=111.4
Q ss_pred hhHHhhcC-CCCC-----CCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCC-------------CCC
Q 008477 7 STIDAELD-EIDL-----DASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQ-------------WDS 67 (564)
Q Consensus 7 ~~l~~~~~-g~~v-----~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~-------------~g~ 67 (564)
..+...++ |+++ +..|..|.||| |+|+..|+.+++++|+++|++++..+. .|+
T Consensus 51 ~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~ 122 (232)
T 2rfa_A 51 EAAMVLMEAAPELVFEPMTSELYEGQTAL--------HIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122 (232)
T ss_dssp HHHHHHHHHCGGGGGCCCCSTTTTTCCHH--------HHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCS
T ss_pred HHHHHHHHcCchhccccccccCCCCcCHH--------HHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCC
Confidence 34444444 6655 77888999999 999999999999999999999998865 799
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCCCccCCCCc-hHHHHc--hHHHH----HHHHhccCCCC------CCCcccccccc
Q 008477 68 VALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKVR----KLLKAYEARPP------PLGPLQAALRD 134 (564)
Q Consensus 68 TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i~----~lLl~~~~~~~------~~~~~~~g~t~ 134 (564)
||||+|+..|+.+++++|+++|++++..|..|.| +|+|+. +.+++ ++|+++|++.. ..+ ..|.||
T Consensus 123 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~--~~g~tp 200 (232)
T 2rfa_A 123 HPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPN--NQGLTP 200 (232)
T ss_dssp SHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCC--TTSCCH
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCC--CCCCCH
Confidence 9999999999999999999999999999999998 788888 66665 99999999874 444 789999
Q ss_pred chhccccccc
Q 008477 135 TFLGCGANRQ 144 (564)
Q Consensus 135 lh~A~~~~~~ 144 (564)
+|+|+..++.
T Consensus 201 l~~A~~~g~~ 210 (232)
T 2rfa_A 201 FKLAGVEGNI 210 (232)
T ss_dssp HHHHHHHTCH
T ss_pred HHHHHHcCCH
Confidence 9999998884
No 71
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.69 E-value=6.7e-17 Score=159.38 Aligned_cols=119 Identities=23% Similarity=0.304 Sum_probs=98.6
Q ss_pred CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 008477 15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQ-WDSVALYYACLAGHLDAARMLLESGAICS 93 (564)
Q Consensus 15 g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~-~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~ 93 (564)
+++++.+|..|.||| |+|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.+++++|+++|++++
T Consensus 148 ~~~~~~~~~~g~t~L--------~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~ 219 (282)
T 1oy3_D 148 RLQLEAENYDGHTPL--------HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT 219 (282)
T ss_dssp GGGTTCCCTTSCCHH--------HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred hhcCCCcCCCCcCHH--------HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence 567899999999999 999999999999999999999999985 49999999999999999999999999999
Q ss_pred CccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhcccccc
Q 008477 94 EHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR 143 (564)
Q Consensus 94 ~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~ 143 (564)
.+|..|.| +|+|+. +.+++++|+++|++++..+ ..|.||++.|.....
T Consensus 220 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 220 ARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDG--GDKLSPCSSSGSDSD 270 (282)
T ss_dssp CCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-----------------
T ss_pred ccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCC--CcccccccccCCccc
Confidence 99999998 788888 8999999999999999877 899999999887554
No 72
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.69 E-value=4.2e-17 Score=156.63 Aligned_cols=126 Identities=15% Similarity=0.118 Sum_probs=112.9
Q ss_pred hhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 008477 7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML 85 (564)
Q Consensus 7 ~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~L 85 (564)
..+...++ |+++|.+|..|+||| |+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|
T Consensus 35 ~~v~~Ll~~g~~~~~~d~~g~tpL--------h~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~L 106 (229)
T 2vge_A 35 EVVQQAVKEMNDPSQPNEEGITAL--------HNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMAL 106 (229)
T ss_dssp HHHHHHHHHSSCTTCCCTTSCCHH--------HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhcCCCCCCCCCCCCCHH--------HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 45556666 999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCcc-CCCCc-hHHH--Hc--hHHHHHHHHhccCCCCCCCccccccccchhccccc
Q 008477 86 LESGAICSEHT-FDGDR-CHYA--AL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGAN 142 (564)
Q Consensus 86 l~~ga~~~~~d-~~g~t-l~~a--a~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~ 142 (564)
+++|++++..+ ..|.| +|+| +. +.+++++|+++|++++..+ ..|.|++|.++...
T Consensus 107 l~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~--~~~~~~l~~~~~~~ 167 (229)
T 2vge_A 107 VQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMN--SGAVYALWDYSAEF 167 (229)
T ss_dssp HTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSG--GGEEEESSCBCCSS
T ss_pred HHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCccccc--CCchHHHHHHhhcc
Confidence 99999999986 68887 7777 55 8999999999999988866 78889998665543
No 73
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.69 E-value=9.4e-17 Score=145.78 Aligned_cols=112 Identities=15% Similarity=0.121 Sum_probs=104.9
Q ss_pred CCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCccCCCCc-h
Q 008477 24 SSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-C 102 (564)
Q Consensus 24 ~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t-l 102 (564)
.|.||| |+|+..|+.++++.|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++..+..|.| +
T Consensus 2 ~~~t~L--------~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 73 (167)
T 3v31_A 2 ANSLSV--------HQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESAL 73 (167)
T ss_dssp TTCCCH--------HHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred CCcchH--------HHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence 578888 9999999999999999999999999999999999999999999999999999999999999987 7
Q ss_pred HHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccch
Q 008477 103 HYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQF 145 (564)
Q Consensus 103 ~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~~ 145 (564)
|+|+. +.+++++|+++|++++..+ ..|.||||.|+..++..
T Consensus 74 ~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~~ 116 (167)
T 3v31_A 74 SLACSKGYTDIVKMLLDCGVDVNEYD--WNGGTPLLYAVHGNHVK 116 (167)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCTTCCC--TTSCCHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCcCC--CCCCCHHHHHHHcCCHH
Confidence 88888 8999999999999998877 88999999999988743
No 74
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.69 E-value=7.4e-17 Score=159.07 Aligned_cols=129 Identities=16% Similarity=0.081 Sum_probs=115.0
Q ss_pred hhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCC---------------------------
Q 008477 7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVN--------------------------- 58 (564)
Q Consensus 7 ~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~--------------------------- 58 (564)
..+...++ |++++.+|..|+||| |+|+..|+.+++++|+++|++
T Consensus 59 ~~v~~Ll~~ga~~~~~~~~g~tpL--------~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (282)
T 1oy3_D 59 STVEKLYAAGAGVLVAERGGHTAL--------HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAV 130 (282)
T ss_dssp HHHHHHHHTTCCSSCCCTTSCCHH--------HHHTTTTCHHHHHHHSSSCCSSCCCC----------------------
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHH--------HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhh
Confidence 44555555 899999999999999 999999999999999998765
Q ss_pred --------------------ccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCccCC-CCc-hHHHHc--hHHHHHH
Q 008477 59 --------------------VNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFD-GDR-CHYAAL--NLKVRKL 114 (564)
Q Consensus 59 --------------------~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~-g~t-l~~aa~--~~~i~~l 114 (564)
++.+|..|+||||+|+..|+.+++++|+++|++++..+.. |.| +|+|+. +.+++++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~ 210 (282)
T 1oy3_D 131 DSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210 (282)
T ss_dssp -------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred ccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHH
Confidence 6778899999999999999999999999999999998854 887 788888 8999999
Q ss_pred HHhccCCCCCCCccccccccchhccccccch
Q 008477 115 LKAYEARPPPLGPLQAALRDTFLGCGANRQF 145 (564)
Q Consensus 115 Ll~~~~~~~~~~~~~~g~t~lh~A~~~~~~~ 145 (564)
|+++|++++..+ ..|.||||+|+..++..
T Consensus 211 Ll~~gad~~~~d--~~g~tpL~~A~~~~~~~ 239 (282)
T 1oy3_D 211 LLKAGADPTARM--YGGRTPLGSALLRPNPI 239 (282)
T ss_dssp HHHTTCCTTCCC--TTSCCHHHHHHTSSCHH
T ss_pred HHHcCCCCcccc--cCCCCHHHHHHHcCCcH
Confidence 999999999877 88999999999988853
No 75
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.68 E-value=2.3e-17 Score=148.35 Aligned_cols=116 Identities=23% Similarity=0.123 Sum_probs=104.0
Q ss_pred CCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCccC
Q 008477 18 LDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTF 97 (564)
Q Consensus 18 v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~ 97 (564)
.+..+..|.||| |+|+..|+.+++++|+++|++++.+|..|+||||+|+ .|+.+++++|+++|++++..|.
T Consensus 5 ~~~~~~~~~t~L--------~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~ 75 (156)
T 1bi7_B 5 AGSSMEPSADWL--------ATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADP 75 (156)
T ss_dssp -----CCSTTHH--------HHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCT
T ss_pred ccCCCccchHHH--------HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCC
Confidence 345678899999 9999999999999999999999999999999999985 8999999999999999999999
Q ss_pred CCCc--hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 98 DGDR--CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 98 ~g~t--l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
.|.| +|+|+. +.+++++|+++|++++..+ ..|.||||+|+..++.
T Consensus 76 ~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d--~~g~tpl~~A~~~~~~ 124 (156)
T 1bi7_B 76 ATLTRPVHDAAREGFLDTLVVLHRAGARLDVRD--AWGRLPVDLAEELGHR 124 (156)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCC--TTCCCHHHHHHHHTCH
T ss_pred CCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccC--CCCCCHHHHHHHhCHH
Confidence 9985 688887 8999999999999999877 7899999999988874
No 76
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.68 E-value=2.5e-17 Score=160.55 Aligned_cols=114 Identities=18% Similarity=0.157 Sum_probs=104.6
Q ss_pred CCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCC-------------CCcHHHHHHHcCCHHHHHHHHh
Q 008477 21 SDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQW-------------DSVALYYACLAGHLDAARMLLE 87 (564)
Q Consensus 21 ~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~-------------g~TpL~~A~~~g~~~~v~~Ll~ 87 (564)
+|..|.||| |+|+..|+.+++++|+++|++++.+|.. |+||||+|+..|+.+++++|++
T Consensus 86 ~d~~g~t~L--------~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 86 EFYQGHSAL--------HIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp TTTTTCCHH--------HHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccccCCCHH--------HHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 457899999 9999999999999999999999999876 9999999999999999999999
Q ss_pred ---CCCCCCCccCCCCc-hHHHHc----hHH-------HHHHHHhccCCC-------CCCCccccccccchhccccccc
Q 008477 88 ---SGAICSEHTFDGDR-CHYAAL----NLK-------VRKLLKAYEARP-------PPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 88 ---~ga~~~~~d~~g~t-l~~aa~----~~~-------i~~lLl~~~~~~-------~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
+|++++.+|..|.| +|+|+. +.+ ++++|+++|+++ +..+ ..|.||||+|+..++.
T Consensus 158 ~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d--~~g~tpL~~A~~~g~~ 234 (256)
T 2etb_A 158 NPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISN--HQGLTPLKLAAKEGKI 234 (256)
T ss_dssp CSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCC--TTSCCHHHHHHHTTCH
T ss_pred ccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccC--CCCCCHHHHHHHhCCH
Confidence 99999999999998 788885 455 999999999988 6656 7899999999998884
No 77
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.68 E-value=2.3e-16 Score=151.67 Aligned_cols=117 Identities=20% Similarity=0.292 Sum_probs=77.8
Q ss_pred CCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcc
Q 008477 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96 (564)
Q Consensus 17 ~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d 96 (564)
+++.+|..|.||| |+|+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++..+
T Consensus 3 ~~~~~~~~g~t~L--------~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 74 (237)
T 3b7b_A 3 NFKMEHQNKRSPL--------HAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKD 74 (237)
T ss_dssp CCCCSSCCSCCHH--------HHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCC
T ss_pred CcccccCCCCCHH--------HHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCC
Confidence 4556666677777 77777777777777777777776666667777777777777777777777777766666
Q ss_pred CCCCc-hHHHHc--hHHHHHHHHhcc-CCCCCCCccccccccchhcccccc
Q 008477 97 FDGDR-CHYAAL--NLKVRKLLKAYE-ARPPPLGPLQAALRDTFLGCGANR 143 (564)
Q Consensus 97 ~~g~t-l~~aa~--~~~i~~lLl~~~-~~~~~~~~~~~g~t~lh~A~~~~~ 143 (564)
..|.| +|+|+. +.+++++|++.+ .+++..+ ..|.||+|.|+..++
T Consensus 75 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~--~~g~t~L~~A~~~~~ 123 (237)
T 3b7b_A 75 AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD--DGGWTPMIWATEYKH 123 (237)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCC--TTSCCHHHHHHHTTC
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCC--CCCCCHHHHHHHcCC
Confidence 66665 555555 566666666665 4555444 556677777666655
No 78
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.68 E-value=1.5e-16 Score=139.38 Aligned_cols=106 Identities=25% Similarity=0.359 Sum_probs=97.7
Q ss_pred hhhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 008477 6 QSTIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 6 ~~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
...+...++ |+++|.+|..|+||| |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus 27 ~~~v~~Ll~~g~~~~~~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~ 98 (136)
T 2jab_A 27 DDEVRILMANGADVNAKDEYGLTPL--------YLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEV 98 (136)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHH--------HHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHH--------HHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHH
Confidence 345566666 999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhcc
Q 008477 85 LLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYE 119 (564)
Q Consensus 85 Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~ 119 (564)
|+++|++++..|..|.| +|+|+. +.+++++|+++|
T Consensus 99 Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 99 LLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999998 788887 899999999876
No 79
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.68 E-value=5.9e-17 Score=143.52 Aligned_cols=94 Identities=18% Similarity=0.313 Sum_probs=79.8
Q ss_pred CCCCCCeEEEecCeeechhhHhhcccChhHHHhccccccc--cccceEEcCCCCHHHHHHHhhhHccCCccCCcccHHHH
Q 008477 167 DSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRY--RNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDL 244 (564)
Q Consensus 167 ~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~l~~~~~~e--~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~~~~~l 244 (564)
++.+|||+|.++|+.|+|||.||++||+||++||.+++.+ +....|.++++++++|+.+|+|+|||.+.++.+++.++
T Consensus 44 ~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i~~~~v~~l 123 (144)
T 2ppi_A 44 ESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDV 123 (144)
T ss_dssp --CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCCCCCTTTHHHH
T ss_pred cCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 3567799999999999999999999999999999988865 56788999999999999999999999999999999988
Q ss_pred HHHHhHhcHHHHHHHH
Q 008477 245 VKICKVCKCESLQRII 260 (564)
Q Consensus 245 l~~a~~c~~~~L~~~l 260 (564)
+.+|+.++++.|.+.+
T Consensus 124 l~~A~~l~i~~L~~~C 139 (144)
T 2ppi_A 124 VQAADLLLLTDLKTLC 139 (144)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCcHHHHHHH
Confidence 8888777555554443
No 80
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.68 E-value=6.9e-17 Score=160.48 Aligned_cols=167 Identities=17% Similarity=0.089 Sum_probs=125.2
Q ss_pred hhhHHhhcCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 008477 6 QSTIDAELDEIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML 85 (564)
Q Consensus 6 ~~~l~~~~~g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~L 85 (564)
...+.+.+...++|.+|..|.||| |+|+..|+.+++++|+++|++++.+| |+||||+|+..|+.+++++|
T Consensus 12 ~~~v~~lL~~~~~~~~d~~g~t~L--------~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~L 81 (285)
T 3kea_A 12 SKQLKSFLSSKDTFKADVHGHSAS--------YYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKIL 81 (285)
T ss_dssp HHHHHHHHHSTTTTCCCTTSCCHH--------HHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHH
T ss_pred HHHHHHHHHhCCCCccCCCCCCHH--------HHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHH
Confidence 344555555457899999999999 99999999999999999999988874 89999999999999999999
Q ss_pred HhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccc-cccchhccccccchhhhhHHhhcccccccC
Q 008477 86 LESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAA-LRDTFLGCGANRQFLEEAEVVLGISGVTSN 161 (564)
Q Consensus 86 l~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g-~t~lh~A~~~~~~~l~~~~~~~~~~~l~~~ 161 (564)
+++|++++..|..|.| +|+|+. +.+++++|+++|++++..+ ..| .||||.|+..++....+... ..
T Consensus 82 l~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~--~~g~~t~L~~A~~~~~~~~v~~Ll--------~~ 151 (285)
T 3kea_A 82 LFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYG--KTGWKTSFYHAVMLNDVSIVSYFL--------SE 151 (285)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCS--SSGGGSHHHHHHHTTCHHHHHHHH--------TT
T ss_pred HHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccC--CCCCCCHHHHHHHcCCHHHHHHHH--------hC
Confidence 9999999999998887 788887 7889999999998887766 667 79999999888743333222 11
Q ss_pred CCCCCCCCCCCeEEEecCeeechhhHhhcccChhHHHhcc
Q 008477 162 GASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFE 201 (564)
Q Consensus 162 ~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~l~~ 201 (564)
+... .|. ..+.-+.|.++........+-++.
T Consensus 152 g~~~-----~~~----~~g~t~L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 152 IPST-----FDL----AILLSCIHITIKNGHVDMMILLLD 182 (285)
T ss_dssp SCTT-----CCC----STHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcc-----ccc----cCCccHHHHHHHcChHHHHHHHHH
Confidence 1110 011 134456777766666666666554
No 81
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.68 E-value=4.2e-17 Score=157.63 Aligned_cols=126 Identities=19% Similarity=0.149 Sum_probs=100.7
Q ss_pred hhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 008477 7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML 85 (564)
Q Consensus 7 ~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~L 85 (564)
..+...++ |++++.. ..|.||| |+|+..|+.++++.|++.|+++|.+|..|+||||+|+..|+.+++++|
T Consensus 19 ~~~~~ll~~g~~~~~~-~~~~t~L--------~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L 89 (239)
T 1ycs_B 19 KTGSERIAHGMRVKFN-PLPLALL--------LDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFL 89 (239)
T ss_dssp -------------------CHHHH--------HHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhccCCCcccC-chhhHHH--------HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 44455565 8888753 6678888 999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCcccccc-ccchhc--ccccc
Q 008477 86 LESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAAL-RDTFLG--CGANR 143 (564)
Q Consensus 86 l~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~-t~lh~A--~~~~~ 143 (564)
+++|++++..|..|.| +|+|+. +.+++++|+++|++++..+ ..|. ||+|+| +..++
T Consensus 90 l~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~~~~t~l~~a~~~~~g~ 151 (239)
T 1ycs_B 90 VQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT--YSDMQTAADKCEEMEEGY 151 (239)
T ss_dssp HHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--SSSCCCHHHHCCSSSTTC
T ss_pred HHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceec--CCCCcchHHHHHHhhhcc
Confidence 9999999999999998 888888 8999999999999998866 5555 999999 55555
No 82
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.67 E-value=4.4e-17 Score=159.16 Aligned_cols=119 Identities=16% Similarity=0.166 Sum_probs=107.5
Q ss_pred CCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccC--------------CCCCcHHHHHHHcCCHHH
Q 008477 16 IDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARD--------------QWDSVALYYACLAGHLDA 81 (564)
Q Consensus 16 ~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d--------------~~g~TpL~~A~~~g~~~~ 81 (564)
..++..|..|+||| |+|+..|+.+++++|+++|++++.++ ..|+||||+|+..|+.++
T Consensus 84 ~~~~~~d~~g~t~L--------~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~ 155 (260)
T 3jxi_A 84 SPFRDVYYRGQTAL--------HIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHI 155 (260)
T ss_dssp CCBCCSSEESBCHH--------HHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHH
T ss_pred ccccccccCCCCHH--------HHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHH
Confidence 44566777999999 99999999999999999999999998 689999999999999999
Q ss_pred HHHHHh---CCCCCCCccCCCCc-hHHHHc--h---------HHHHHHHHhccCCC-------CCCCccccccccchhcc
Q 008477 82 ARMLLE---SGAICSEHTFDGDR-CHYAAL--N---------LKVRKLLKAYEARP-------PPLGPLQAALRDTFLGC 139 (564)
Q Consensus 82 v~~Ll~---~ga~~~~~d~~g~t-l~~aa~--~---------~~i~~lLl~~~~~~-------~~~~~~~~g~t~lh~A~ 139 (564)
+++|++ +|++++.+|..|.| +|+|+. + .+++++|+++|+++ +..+ ..|.||||+|+
T Consensus 156 v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d--~~g~tpL~~A~ 233 (260)
T 3jxi_A 156 VHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLN--NDGLSPLMMAA 233 (260)
T ss_dssp HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCC--TTSCCHHHHHH
T ss_pred HHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhccc--CCCCCHHHHHH
Confidence 999999 99999999999998 889885 2 58999999999987 3445 78999999999
Q ss_pred ccccc
Q 008477 140 GANRQ 144 (564)
Q Consensus 140 ~~~~~ 144 (564)
..++.
T Consensus 234 ~~g~~ 238 (260)
T 3jxi_A 234 KTGKI 238 (260)
T ss_dssp HTTCH
T ss_pred HcCCH
Confidence 98884
No 83
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=158.39 Aligned_cols=118 Identities=17% Similarity=0.178 Sum_probs=87.6
Q ss_pred CCCCCCCCCCCCCCCCCChhHHHHH-----hcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 008477 17 DLDASDFSSSVPLKKVPNGDVFEAS-----RAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAI 91 (564)
Q Consensus 17 ~v~~~d~~g~tpL~~~~~~~l~~Aa-----~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~ 91 (564)
+++..|..|.||| |+|+ ..|+.++++.|++.|.+++..|..|+||||+|+..|+.+++++|+++|++
T Consensus 137 ~~~~~~~~g~tpL--------~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad 208 (276)
T 4hbd_A 137 KVDKQNRAGYSPI--------MLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEAD 208 (276)
T ss_dssp CTTCCCTTSCCHH--------HHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cCCCCCCCCCCHH--------HHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 4555555555555 5555 33445555555555555555566788888888899999999999999999
Q ss_pred CCCccCCCCc-hHHHHc--hHHHHHHHHh-ccCCCCCCCccccccccchhccccccc
Q 008477 92 CSEHTFDGDR-CHYAAL--NLKVRKLLKA-YEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 92 ~~~~d~~g~t-l~~aa~--~~~i~~lLl~-~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
++.+|..|.| +|+|+. +.+++++|++ .|++++..+ ..|.||+|+|+..++.
T Consensus 209 ~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d--~~g~TpL~~A~~~g~~ 263 (276)
T 4hbd_A 209 VNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTD--RDGSTALMVALDAGQS 263 (276)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCC--TTSCCHHHHHHHHTCH
T ss_pred CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcC--CCCCCHHHHHHHcCCH
Confidence 9988888887 788877 7888898888 788888866 7889999999887774
No 84
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.67 E-value=1.9e-16 Score=160.53 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=85.1
Q ss_pred CCCCCC-CCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCC---HHHHHHHHhCC-
Q 008477 15 EIDLDA-SDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGH---LDAARMLLESG- 89 (564)
Q Consensus 15 g~~v~~-~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~---~~~v~~Ll~~g- 89 (564)
|+++|. +|..|+||| |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+ .++++.|++.+
T Consensus 120 g~dvn~~~d~~g~TpL--------h~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~ 191 (327)
T 1sw6_A 120 QLNLNIPVDEHGNTPL--------HWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY 191 (327)
T ss_dssp CCCSCSCCSTTCCCHH--------HHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG
T ss_pred CCCcccccCCCCCcHH--------HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhh
Confidence 899999 899999999 99999999999999999999999999999999999999988 67777888776
Q ss_pred CCCCCccCCCCc-hHHHHc------hHHHHHHHHhc
Q 008477 90 AICSEHTFDGDR-CHYAAL------NLKVRKLLKAY 118 (564)
Q Consensus 90 a~~~~~d~~g~t-l~~aa~------~~~i~~lLl~~ 118 (564)
++++..|..|.| +|+|+. +.+++++|++.
T Consensus 192 ~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~ 227 (327)
T 1sw6_A 192 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI 227 (327)
T ss_dssp GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred ccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHH
Confidence 778888888887 777774 66777777765
No 85
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.67 E-value=5.8e-17 Score=161.03 Aligned_cols=126 Identities=15% Similarity=0.160 Sum_probs=112.5
Q ss_pred hhhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 008477 6 QSTIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 6 ~~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
...+...++ |++++..| |+||| |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus 44 ~~~v~~Ll~~g~~~~~~~--g~t~L--------~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~ 113 (285)
T 3kea_A 44 VRLVCTLLNAGALKNLLE--NEFPL--------HQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKL 113 (285)
T ss_dssp HHHHHHHHHTTGGGSCCT--TCCHH--------HHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCC--CCCHH--------HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence 345555665 89998884 89999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCccCCC-Cc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 85 LLESGAICSEHTFDG-DR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 85 Ll~~ga~~~~~d~~g-~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
|+++|++++..+..| .| +|+|+. +.+++++|+++|.+.... ..|.||||.|+..++.
T Consensus 114 Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~---~~g~t~L~~A~~~g~~ 174 (285)
T 3kea_A 114 FVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL---AILLSCIHITIKNGHV 174 (285)
T ss_dssp HHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC---STHHHHHHHHHHTTCH
T ss_pred HHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc---cCCccHHHHHHHcChH
Confidence 999999999999999 56 788888 899999999999876332 2799999999998884
No 86
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.67 E-value=9.5e-17 Score=160.72 Aligned_cols=122 Identities=16% Similarity=0.201 Sum_probs=103.6
Q ss_pred hhHHhhcC-CCCCCC------CCCCCCCCCCCCCChhHHHHHhc---CCHHHHHHHHHcCCCccccCCCCCcHHHHHHHc
Q 008477 7 STIDAELD-EIDLDA------SDFSSSVPLKKVPNGDVFEASRA---GDVDRLRYILESGVNVNARDQWDSVALYYACLA 76 (564)
Q Consensus 7 ~~l~~~~~-g~~v~~------~d~~g~tpL~~~~~~~l~~Aa~~---g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~ 76 (564)
..+...+. |++++. .+..|.||| |+|+.. |+.+++++|+++|+++|.+|..|+||||+|+..
T Consensus 165 ~~v~~ll~~g~d~~~~~~~~~~~~~g~t~L--------h~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~ 236 (301)
T 2b0o_E 165 LSVLEAFANGQDFGQPLPGPDAQAPEELVL--------HLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALY 236 (301)
T ss_dssp HHHHHHHHTTCCTTSCEECSSSCSCEECHH--------HHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHhcCCcccccCCCcccCCCCccHH--------HHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc
Confidence 34455555 899988 699999999 999997 899999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 77 GHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 77 g~~~~v~~Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
|+.+++++|+++|++++..|..|.| +|+|+. +.+++++|+++|++ .|.||||+|+..++.
T Consensus 237 g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 237 NQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG--------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp TCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--------TTSSCCC--------
T ss_pred CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--------CCCChhHHHHhcCCc
Confidence 9999999999999999999999998 788887 89999999998875 378999999987763
No 87
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.67 E-value=7.8e-17 Score=153.68 Aligned_cols=113 Identities=31% Similarity=0.338 Sum_probs=105.0
Q ss_pred CCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCccCCCC
Q 008477 22 DFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLES-GAICSEHTFDGD 100 (564)
Q Consensus 22 d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~ 100 (564)
+..|.||| |+|+..|+.++++.|++.|++++.+|..|+||||+|+..|+.+++++|+++ |++++..|..|.
T Consensus 70 ~~~g~t~L--------~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~ 141 (222)
T 3ehr_A 70 AESIDNPL--------HEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGD 141 (222)
T ss_dssp EEEESCHH--------HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSC
T ss_pred cccccccc--------ccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCC
Confidence 44567788 999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred c-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 101 R-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 101 t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
| +|+|+. +.+++++|+++|++++..+ ..|.||+|+|+..++.
T Consensus 142 tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~g~t~l~~A~~~~~~ 186 (222)
T 3ehr_A 142 TALHAAAWKGYADIVQLLLAKGARTDLRN--IEKKLAFDMATNAACA 186 (222)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCCSCCCC--TTSCCHHHHCCSHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCcccc--CCCCCHHHHhcchhHH
Confidence 8 788888 8999999999999999877 8899999999987763
No 88
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.66 E-value=2.3e-16 Score=150.56 Aligned_cols=129 Identities=16% Similarity=0.127 Sum_probs=104.4
Q ss_pred hhhHHhhcC-CCCC-CCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcC--CCccc-cCCCCCcHHHHHHHcCCHH
Q 008477 6 QSTIDAELD-EIDL-DASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESG--VNVNA-RDQWDSVALYYACLAGHLD 80 (564)
Q Consensus 6 ~~~l~~~~~-g~~v-~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g--~~~n~-~d~~g~TpL~~A~~~g~~~ 80 (564)
...+...++ |.++ +..|..|.||| |+|+..|+.+++++|++.| ++++. .|..|+||||+|+..|+.+
T Consensus 15 ~~~v~~Ll~~~~~~~~~~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~ 86 (228)
T 2dzn_A 15 FFKVQELLHSKPSLLLQKDQDGRIPL--------HWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLE 86 (228)
T ss_dssp HHHHHHHHHHCGGGTTCCCTTSCCHH--------HHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHH
T ss_pred HHHHHHHHhcCccccccCCCCCCCHH--------HHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHH
Confidence 344555555 5554 44888899999 9999999999999999988 55655 7788999999999999999
Q ss_pred HHHHHHhCC--CCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 81 AARMLLESG--AICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 81 ~v~~Ll~~g--a~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
++++|+++| ++++..+..|.| +|+|+. +.+++++|+++|++++..+ ..|.||||.|+..++.
T Consensus 87 ~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~ 153 (228)
T 2dzn_A 87 VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD--KFNQIPLHRAASVGSL 153 (228)
T ss_dssp HHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC--TTSCCHHHHHHHTTCH
T ss_pred HHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccC--CCCCCHHHHHHHcCCH
Confidence 999999888 888888888887 677777 7888899998888888766 7788999999887774
No 89
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.66 E-value=7.4e-17 Score=138.10 Aligned_cols=88 Identities=16% Similarity=0.184 Sum_probs=76.2
Q ss_pred CCCCCeEEEecCeeechhhHhhcccChhHHHhccccccccccceEEcCCCCHHHHHHHhhhHccCCccCCcccHHHHHHH
Q 008477 168 SFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDLVKI 247 (564)
Q Consensus 168 ~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~l~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~~~~~ll~~ 247 (564)
+.+|||+|.++|++|+|||.||+++|+||++||.+++ ...|.++++++++|+.+|+|+|||++.++.+++.+++.+
T Consensus 22 ~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~~~v~~ll~~ 97 (119)
T 3b84_A 22 GQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLA 97 (119)
T ss_dssp TCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEECGGGHHHHHHHHHHHHHSCCCCCTTTHHHHHHH
T ss_pred CCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Confidence 4567999999999999999999999999999998876 457888999999999999999999999999998888888
Q ss_pred HhHhcHHHHHHH
Q 008477 248 CKVCKCESLQRI 259 (564)
Q Consensus 248 a~~c~~~~L~~~ 259 (564)
|+.++++.|.+.
T Consensus 98 A~~~~i~~L~~~ 109 (119)
T 3b84_A 98 ARELRVPEAVEL 109 (119)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHHhCcHHHHHH
Confidence 866644444433
No 90
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.66 E-value=3.4e-17 Score=151.37 Aligned_cols=111 Identities=24% Similarity=0.204 Sum_probs=102.5
Q ss_pred CCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcc-CCCC
Q 008477 22 DFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT-FDGD 100 (564)
Q Consensus 22 d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~ 100 (564)
+..|.||| |+|+..|+.++++.|++ |+++|.+|..|+||||+|+..|+.+++++|+++|++++..+ ..|.
T Consensus 41 ~~~g~t~L--------~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~ 111 (183)
T 3deo_A 41 VSEYETPW--------WTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGL 111 (183)
T ss_dssp HHHHHHHH--------HHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSC
T ss_pred CCCCCCHH--------HHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCC
Confidence 44677888 99999999999999999 99999999999999999999999999999999999999888 8898
Q ss_pred c-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhcccccc
Q 008477 101 R-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR 143 (564)
Q Consensus 101 t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~ 143 (564)
| +|+|+. +.+++++|+++|++++..+ ..|.||+|+|++.++
T Consensus 112 tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d--~~g~tpl~~A~~~~~ 155 (183)
T 3deo_A 112 TALHMAAGYVRPEVVEALVELGADIEVED--ERGLTALELAREILK 155 (183)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHTCCTTCCC--TTSCCHHHHHHHHHH
T ss_pred CHHHHHHhcCcHHHHHHHHHcCCCCcCCC--CCCCCHHHHHHHhcc
Confidence 7 788888 8999999999999999877 889999999997655
No 91
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.66 E-value=6.3e-17 Score=157.77 Aligned_cols=125 Identities=15% Similarity=0.004 Sum_probs=110.7
Q ss_pred hHHhhcC-CCCCCC----CCCCCCCCCCCCCChhHHHHHhc---CCHHHHHHHHHcCCCcccc-----------CCCCCc
Q 008477 8 TIDAELD-EIDLDA----SDFSSSVPLKKVPNGDVFEASRA---GDVDRLRYILESGVNVNAR-----------DQWDSV 68 (564)
Q Consensus 8 ~l~~~~~-g~~v~~----~d~~g~tpL~~~~~~~l~~Aa~~---g~~~~v~~Ll~~g~~~n~~-----------d~~g~T 68 (564)
.+...++ |+++|. .|..|+||| |+|+.. |+.+++++|++.|++++.. |..|+|
T Consensus 21 ll~~l~~~g~~i~~~~~~~d~~g~t~L--------~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t 92 (256)
T 2etb_A 21 LLEYLRWNSKYLTDSAYTEGSTGKTCL--------MKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHS 92 (256)
T ss_dssp HHHHHHHHTCCTTSGGGSBTTTTBCHH--------HHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCC
T ss_pred HHHHHHHcCCCcccccccCCCCCCCHH--------HHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCC
Confidence 3344444 999998 899999999 999999 9999999999998877633 378999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCccCC-------------CCc-hHHHHc--hHHHHHHHHh---ccCCCCCCCccc
Q 008477 69 ALYYACLAGHLDAARMLLESGAICSEHTFD-------------GDR-CHYAAL--NLKVRKLLKA---YEARPPPLGPLQ 129 (564)
Q Consensus 69 pL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~-------------g~t-l~~aa~--~~~i~~lLl~---~~~~~~~~~~~~ 129 (564)
|||+|+..|+.+++++|+++|++++..+.. |.| +|+|+. +.+++++|++ +|++++..+ .
T Consensus 93 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d--~ 170 (256)
T 2etb_A 93 ALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATD--S 170 (256)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCC--T
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccC--C
Confidence 999999999999999999999999999886 877 888888 8999999999 999999877 8
Q ss_pred cccccchhccccc
Q 008477 130 AALRDTFLGCGAN 142 (564)
Q Consensus 130 ~g~t~lh~A~~~~ 142 (564)
.|.||||+|+..+
T Consensus 171 ~g~TpLh~A~~~~ 183 (256)
T 2etb_A 171 LGNTVLHALVMIA 183 (256)
T ss_dssp TSCCHHHHHHHHC
T ss_pred CCCCHHHHHHHcc
Confidence 8999999999833
No 92
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.66 E-value=3.8e-16 Score=152.92 Aligned_cols=126 Identities=17% Similarity=0.150 Sum_probs=103.5
Q ss_pred hhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 008477 7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML 85 (564)
Q Consensus 7 ~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~L 85 (564)
..+...++ |+++|.+|..|.||| |+|+..|+.+++++|+++|++++. +..|.||||+|+..|+.+++++|
T Consensus 50 ~~v~~Ll~~g~~~~~~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~L 120 (261)
T 2xai_A 50 SCVKILLKHGAQVNGVTADWHTPL--------FNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSL 120 (261)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHH--------HHHHHHTCHHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHH--------HHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHH
Confidence 44555555 899999999999999 888888888888888888888875 34588888888888888888888
Q ss_pred HhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 86 LESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 86 l~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
+++|++++..|..|.| +|+|+. +.+++++|+++|++++. + ..|.||||.|+..++.
T Consensus 121 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~--~~g~t~Lh~A~~~~~~ 179 (261)
T 2xai_A 121 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-G--KGQDSPLHAVARTASE 179 (261)
T ss_dssp HHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-C--BTTBCHHHHHHHHTCH
T ss_pred HHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-C--CCCCChHHHHHHcCCH
Confidence 8888888888888877 677777 78888888888888774 3 6788888888887774
No 93
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.66 E-value=2.5e-16 Score=156.41 Aligned_cols=124 Identities=21% Similarity=0.277 Sum_probs=74.7
Q ss_pred HHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 008477 9 IDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLE 87 (564)
Q Consensus 9 l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~ 87 (564)
+...++ |+++|.+|..|.||| |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++
T Consensus 75 v~~Ll~~g~~~~~~~~~g~t~L--------~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 146 (285)
T 3d9h_A 75 LRNLISQGWAVNIITADHVSPL--------HEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQ 146 (285)
T ss_dssp HHHHHHTTCCSCEECTTCCCHH--------HHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHCCCCCCCcCCCCCCHH--------HHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHH
Confidence 333443 566666666666666 66666666666666666666666666666666666666666666666666
Q ss_pred CCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhcccccc
Q 008477 88 SGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR 143 (564)
Q Consensus 88 ~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~ 143 (564)
+|++++..+. |.| +|+|+. +.+++++|+++|++++..+ ..|.||||+|+..++
T Consensus 147 ~g~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d--~~g~t~L~~A~~~~~ 202 (285)
T 3d9h_A 147 HGASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKI--SHLGTPLYLACENQQ 202 (285)
T ss_dssp TTCCSSCSCT-TSCHHHHHHHHTCHHHHHHHHHTTCCTTCCB--TTTBCHHHHHHHTTC
T ss_pred CCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC--CCCCCHHHHHHHcCc
Confidence 6666654433 444 555555 5566666666666655544 556666666666555
No 94
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.66 E-value=2.6e-16 Score=161.77 Aligned_cols=125 Identities=17% Similarity=0.198 Sum_probs=78.4
Q ss_pred hhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 008477 7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML 85 (564)
Q Consensus 7 ~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~L 85 (564)
..+...++ |+++|..|..|.||| |+|+..|+.+++++|+++|++++. ..|+||||+|+..|+.+++++|
T Consensus 34 ~~v~~Ll~~g~~~~~~d~~g~t~L--------~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~g~~~~v~~L 103 (364)
T 3ljn_A 34 DEVRRLIETGVSPTIQNRFGCTAL--------HLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMANKTDLVVAL 103 (364)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHH--------HHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCCccccCCCCCcHH--------HHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHcCCHHHHHHH
Confidence 44556665 999999999999999 888888888888888888775554 2455555555555555555555
Q ss_pred HhC----CCCCCC-----------------ccCCCCc-hHHHHc----hHHHHHHHHhccCCCCCCCccccccccchhcc
Q 008477 86 LES----GAICSE-----------------HTFDGDR-CHYAAL----NLKVRKLLKAYEARPPPLGPLQAALRDTFLGC 139 (564)
Q Consensus 86 l~~----ga~~~~-----------------~d~~g~t-l~~aa~----~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~ 139 (564)
+++ |++++. .|..|.| +|+|+. +.+++++|+++|++++..+ ..|.||||+|+
T Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d--~~g~t~L~~A~ 181 (364)
T 3ljn_A 104 VEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKD--KADETPLMRAM 181 (364)
T ss_dssp HHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCC--TTSCCHHHHHH
T ss_pred HHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccC--CCCCCHHHHHH
Confidence 555 444444 4444544 444444 2455555555555555444 44555555555
Q ss_pred cccc
Q 008477 140 GANR 143 (564)
Q Consensus 140 ~~~~ 143 (564)
..++
T Consensus 182 ~~g~ 185 (364)
T 3ljn_A 182 EFRN 185 (364)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 5544
No 95
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.65 E-value=3.4e-16 Score=164.92 Aligned_cols=125 Identities=20% Similarity=0.200 Sum_probs=91.4
Q ss_pred HHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 008477 9 IDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLE 87 (564)
Q Consensus 9 l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~ 87 (564)
+...++ |++++..|..|.||| |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++
T Consensus 261 v~~Ll~~~~~~~~~~~~g~t~L--------~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 332 (437)
T 1n11_A 261 VALLLSKQANGNLGNKSGLTPL--------HLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ 332 (437)
T ss_dssp HHHHHTTTCCTTCCCTTCCCHH--------HHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHH
T ss_pred HHHHHhcCCCCCCCCCCCCCHH--------HHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 333444 666666666666666 77777777777777777777777777777777777777777777777777
Q ss_pred CCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhcccccc
Q 008477 88 SGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR 143 (564)
Q Consensus 88 ~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~ 143 (564)
+|++++.+|..|.| +|+|+. +.+++++|+++|++++..+ ..|.||+++|.+.++
T Consensus 333 ~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~--~~g~t~l~~A~~~g~ 389 (437)
T 1n11_A 333 HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS--SDGTTPLAIAKRLGY 389 (437)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC--SSSCCHHHHHHHTTC
T ss_pred cCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCC--CCCCCHHHHHHHcCc
Confidence 77777777777776 666666 6777777777777777765 677777777777665
No 96
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.65 E-value=2.1e-16 Score=166.64 Aligned_cols=120 Identities=24% Similarity=0.246 Sum_probs=104.0
Q ss_pred CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC
Q 008477 15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE 94 (564)
Q Consensus 15 g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~ 94 (564)
|+++|..+..|+||| |+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.
T Consensus 4 g~~~~~~~~~g~t~L--------~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~ 75 (437)
T 1n11_A 4 GISGGGGGESGLTPL--------HVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75 (437)
T ss_dssp -----------CCHH--------HHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSC
T ss_pred CCCccccCCCCCCHH--------HHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC
Confidence 789999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 95 HTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 95 ~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
.+..|.| +|+|+. +.+++++|+++|++++..+ ..|.||||.|+..++.
T Consensus 76 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~--~~g~t~L~~A~~~g~~ 126 (437)
T 1n11_A 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT--TAGHTPLHIAAREGHV 126 (437)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCC--TTCCCHHHHHHHHTCH
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCC--CCCCcHHHHHHHcCCH
Confidence 9999998 788888 8999999999999998876 7899999999998884
No 97
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.65 E-value=6.2e-16 Score=140.82 Aligned_cols=108 Identities=27% Similarity=0.335 Sum_probs=101.2
Q ss_pred hhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCccCCCCc-hHHHHc--hHHH
Q 008477 35 GDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKV 111 (564)
Q Consensus 35 ~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i 111 (564)
+.|++|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..|..|.| +|+|+. +.++
T Consensus 16 ~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 95 (169)
T 2y1l_E 16 KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEI 95 (169)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred chHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHH
Confidence 3449999999999999999999999999999999999999999999999999999999999999998 788888 8999
Q ss_pred HHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 112 RKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 112 ~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
+++|+++|++++..+ ..|.||||.|+..++.
T Consensus 96 ~~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~ 126 (169)
T 2y1l_E 96 VEVLLKNGADVNAND--MEGHTPLHLAAMFGHL 126 (169)
T ss_dssp HHHHHHTTCCTTCCC--TTSCCHHHHHHHTTCH
T ss_pred HHHHHHcCCCCCCCC--CCCCCHHHHHHHcCCH
Confidence 999999999998877 7899999999998874
No 98
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.65 E-value=1.8e-16 Score=139.55 Aligned_cols=99 Identities=19% Similarity=0.364 Sum_probs=84.2
Q ss_pred CCCCCeEEEecCeeechhhHhhcccChhHHHhccccccccccceEEcC-CCCHHHHHHHhhhHccCCccCCcccHHHHHH
Q 008477 168 SFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSRE-KLSYPALYGLIHFFYSDRLEIAVDDMEDLVK 246 (564)
Q Consensus 168 ~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~l~~~~~~e~~~~~i~l~-~v~~~~~~~lL~ylYtg~~~i~~~~~~~ll~ 246 (564)
+.+|||+|.++|+.|+|||.||++||+||++||.+++.+. ..+.++ ++++++|+.+|+|+|||.+.++.+++.+++.
T Consensus 34 ~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~~~~v~~ll~ 111 (138)
T 2z8h_A 34 DVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCR 111 (138)
T ss_dssp TCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEECCTTSCHHHHHHHHHHHHHSCCCCCTTTHHHHHH
T ss_pred CCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEeCCCCCHHHHHHHHHHhcCCCcccCHHHHHHHHH
Confidence 4567999999999999999999999999999999988764 467774 8999999999999999999999998888777
Q ss_pred HHhHhcHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcC
Q 008477 247 ICKVCKCESLQRIIEKELIHQKYAEYKALRDVDNSQKRFILQGS 290 (564)
Q Consensus 247 ~a~~c~~~~L~~~l~~~l~~~~~a~~~~~~~L~~~~~~~i~~~~ 290 (564)
+|+.+ ++..|.+.|.+|+..++
T Consensus 112 ~A~~~----------------------~i~~L~~~C~~~l~~~l 133 (138)
T 2z8h_A 112 CVEFL----------------------SVHNIEESCFQFLKFKF 133 (138)
T ss_dssp HHHHH----------------------TCGGGHHHHHHHTTCCC
T ss_pred HHHHh----------------------CCHHHHHHHHHHHHHhc
Confidence 77555 45556777777776654
No 99
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.65 E-value=3.1e-16 Score=143.04 Aligned_cols=119 Identities=21% Similarity=0.174 Sum_probs=103.5
Q ss_pred hhhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 008477 6 QSTIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 6 ~~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
...+...++ |++++.+|..|.||| |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus 49 ~~~v~~Ll~~g~~~~~~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 120 (172)
T 3v30_A 49 IETVRFLLEWGADPHILAKERESAL--------SLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120 (172)
T ss_dssp HHHHHHHHHHTCCTTCCCTTCCCHH--------HHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCCchhhcccCCCHH--------HHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 355666666 999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCcccccccc
Q 008477 85 LLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRD 134 (564)
Q Consensus 85 Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~ 134 (564)
|+++|++++..|..|.| +|+|+. +.+++++|++++++....+ ..|.||
T Consensus 121 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~--~~~~~p 171 (172)
T 3v30_A 121 LLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSN--LVPADP 171 (172)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC---------
T ss_pred HHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhccc--CCCCCC
Confidence 99999999999999998 788887 8999999999998776655 444444
No 100
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.65 E-value=5.4e-16 Score=149.21 Aligned_cols=120 Identities=21% Similarity=0.168 Sum_probs=72.3
Q ss_pred CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC----
Q 008477 15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA---- 90 (564)
Q Consensus 15 g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga---- 90 (564)
|.+++.+|..|.||| |+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|++.|+
T Consensus 36 ~~~~~~~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~ 107 (241)
T 1k1a_A 36 GRELDIYNNLRQTPL--------HLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTL 107 (241)
T ss_dssp TCCSCCCCTTSCCHH--------HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSC
T ss_pred CCCCCcccccCCCHH--------HHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence 666666666777776 66666666666666666666666666666666666666666666666666655
Q ss_pred CCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhcccccc
Q 008477 91 ICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR 143 (564)
Q Consensus 91 ~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~ 143 (564)
+++..+..|.| +|+|+. +.+++++|+++|++++..+. ..|.||||.|+..++
T Consensus 108 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 108 DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDI-KSGRSPLIHAVENNS 162 (241)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TTCCCHHHHHHHTTC
T ss_pred cccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccc-cCCCcHHHHHHHcCC
Confidence 55555555555 455555 55566666666555544220 335566666655554
No 101
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.65 E-value=2.4e-16 Score=155.26 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=105.2
Q ss_pred CCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCC--------------CCCcHHHHHHHcCCHHHHHHH
Q 008477 20 ASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQ--------------WDSVALYYACLAGHLDAARML 85 (564)
Q Consensus 20 ~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~--------------~g~TpL~~A~~~g~~~~v~~L 85 (564)
..|..|.||| |+|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.+++++|
T Consensus 96 ~~d~~g~tpL--------~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 167 (273)
T 2pnn_A 96 DSYYKGQTAL--------HIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167 (273)
T ss_dssp STTTTTCCHH--------HHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHH
T ss_pred cccCCCCCHH--------HHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 3677999999 999999999999999999999999987 799999999999999999999
Q ss_pred Hh---CCCCCCCccCCCCc-hHHHHc--h---------HHHHHHHHhccCCCCC-------CCccccccccchhcccccc
Q 008477 86 LE---SGAICSEHTFDGDR-CHYAAL--N---------LKVRKLLKAYEARPPP-------LGPLQAALRDTFLGCGANR 143 (564)
Q Consensus 86 l~---~ga~~~~~d~~g~t-l~~aa~--~---------~~i~~lLl~~~~~~~~-------~~~~~~g~t~lh~A~~~~~ 143 (564)
++ +|++++.+|..|.| +|+|+. + .+++++|+++|++++. .+ ..|.||||+|+..++
T Consensus 168 l~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d--~~g~TpL~~A~~~g~ 245 (273)
T 2pnn_A 168 LQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITN--RKGLTPLALAASSGK 245 (273)
T ss_dssp HHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCC--TTSCCHHHHHHHTTC
T ss_pred HhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccC--CCCCCHHHHHHHhCh
Confidence 99 99999999999998 788887 3 6899999999998764 44 789999999999888
Q ss_pred c
Q 008477 144 Q 144 (564)
Q Consensus 144 ~ 144 (564)
.
T Consensus 246 ~ 246 (273)
T 2pnn_A 246 I 246 (273)
T ss_dssp H
T ss_pred H
Confidence 5
No 102
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.65 E-value=5.2e-16 Score=154.07 Aligned_cols=118 Identities=25% Similarity=0.234 Sum_probs=109.1
Q ss_pred CCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcc
Q 008477 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96 (564)
Q Consensus 17 ~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d 96 (564)
.++..|..|+||| |+|+..|+.++++.|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++..|
T Consensus 51 ~~~~~~~~g~t~L--------~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~ 122 (285)
T 3d9h_A 51 PLMGDAVSDWSPM--------HEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 122 (285)
T ss_dssp TTCSSSCCSCCHH--------HHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCC
T ss_pred cccCCCccCCCHH--------HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCC
Confidence 4677899999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccch
Q 008477 97 FDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQF 145 (564)
Q Consensus 97 ~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~~ 145 (564)
..|.| +|+|+. +.+++++|+++|++++..+ .|.||||.|+..++..
T Consensus 123 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~---~g~t~L~~A~~~g~~~ 171 (285)
T 3d9h_A 123 ADWHTPLFNACVSGSWDCVNLLLQHGASVQPES---DLASPIHEAARRGHVE 171 (285)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC---TTSCHHHHHHHHTCHH
T ss_pred CCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC---CCCCHHHHHHHcCCHH
Confidence 99998 788888 8999999999999887543 5999999999988843
No 103
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.65 E-value=2.6e-16 Score=134.08 Aligned_cols=88 Identities=17% Similarity=0.295 Sum_probs=74.5
Q ss_pred CCCCCeEEEecCeeechhhHhhcccChhHHHhccccccccccceEEcC--CCCHHHHHHHhhhHccCCccCCcccHHHHH
Q 008477 168 SFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSRE--KLSYPALYGLIHFFYSDRLEIAVDDMEDLV 245 (564)
Q Consensus 168 ~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~l~~~~~~e~~~~~i~l~--~v~~~~~~~lL~ylYtg~~~i~~~~~~~ll 245 (564)
+.+|||+|.++|+.|+|||.||+++|+||++||.++ ....+.++ ++++++|+.+++|+|||.+.++.+++.+++
T Consensus 20 ~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~~~~v~~ll 95 (116)
T 2vpk_A 20 GFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIH 95 (116)
T ss_dssp TCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHHHHHSCCCCCTTTHHHHH
T ss_pred CCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 456799999999999999999999999999999876 23456666 999999999999999999999999988888
Q ss_pred HHHhHhcHHHHHHH
Q 008477 246 KICKVCKCESLQRI 259 (564)
Q Consensus 246 ~~a~~c~~~~L~~~ 259 (564)
.+|+.++++.|.+.
T Consensus 96 ~~A~~~~i~~L~~~ 109 (116)
T 2vpk_A 96 QAADYLKVEEVVTK 109 (116)
T ss_dssp HHHHHTTCHHHHHH
T ss_pred HHHHHhCCHHHHHH
Confidence 88866644444433
No 104
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.64 E-value=1.8e-16 Score=138.83 Aligned_cols=98 Identities=19% Similarity=0.189 Sum_probs=78.7
Q ss_pred CCCCCeEEEecCeeechhhHhhcccChhHHHhccccccccccceEEcCCCCHHHHHHHhhhHccCCccCCcccHHHHHHH
Q 008477 168 SFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDLVKI 247 (564)
Q Consensus 168 ~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~l~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~~~~~ll~~ 247 (564)
+.+|||+|.++|++|+|||.||+++|+||++||.+++ ...|.++++++++|+.+|+|+|||++.++.+++.+++.+
T Consensus 23 ~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~~~~~~~f~~lL~fiYtg~~~i~~~~v~~ll~~ 98 (135)
T 2yy9_A 23 GQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLA 98 (135)
T ss_dssp TTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEECGGGHHHHHHHHHHHHHSCCCCCTTTHHHHHHH
T ss_pred CCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 4567999999999999999999999999999999876 456888999999999999999999999999988877777
Q ss_pred HhHhcHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcCC
Q 008477 248 CKVCKCESLQRIIEKELIHQKYAEYKALRDVDNSQKRFILQGSA 291 (564)
Q Consensus 248 a~~c~~~~L~~~l~~~l~~~~~a~~~~~~~L~~~~~~~i~~~~~ 291 (564)
|+.+ ++..|.+.|.+|+.+++.
T Consensus 99 A~~l----------------------~i~~L~~~C~~~l~~~l~ 120 (135)
T 2yy9_A 99 AKEL----------------------RVPEAVELCQSFQPQTSV 120 (135)
T ss_dssp HHHT----------------------TCHHHHHHHHHCCC----
T ss_pred HHHh----------------------CcHHHHHHHHHHHHHhcc
Confidence 7655 555566777777666543
No 105
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.64 E-value=3.4e-16 Score=134.42 Aligned_cols=89 Identities=22% Similarity=0.381 Sum_probs=76.5
Q ss_pred CCCCCeEEEecCeeechhhHhhcccChhHHHhccccccccccceEEcCCCCHHHHHHHhhhHccCCccCCcccHHHHHHH
Q 008477 168 SFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDLVKI 247 (564)
Q Consensus 168 ~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~l~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~~~~~ll~~ 247 (564)
+.+|||+|.++|+.|+|||.||+++|+||++||.++ ...+.++++++++|+.+++|+|||+++++.+++.+++.+
T Consensus 26 ~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~ 100 (121)
T 1buo_A 26 GTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYA 100 (121)
T ss_dssp TTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHHHSCCCCCGGGHHHHHHH
T ss_pred CCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeCCCCHHHHHHHHHhhcCCCcCCCHHHHHHHHHH
Confidence 456799999999999999999999999999999863 457889999999999999999999999999999888888
Q ss_pred HhHhcHHHHHHHHH
Q 008477 248 CKVCKCESLQRIIE 261 (564)
Q Consensus 248 a~~c~~~~L~~~l~ 261 (564)
|+.++++.|.+.+.
T Consensus 101 A~~~~i~~L~~~c~ 114 (121)
T 1buo_A 101 AEILEIEYLEEQCL 114 (121)
T ss_dssp HHHHTCHHHHHHHH
T ss_pred HHHHCCHHHHHHHH
Confidence 87665555444433
No 106
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.64 E-value=8.9e-16 Score=156.09 Aligned_cols=111 Identities=30% Similarity=0.356 Sum_probs=101.4
Q ss_pred hhHHhhcC--CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 008477 7 STIDAELD--EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 7 ~~l~~~~~--g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
..+...+. +.+++.+|..|.||| |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus 38 ~~v~~ll~~~~~~~~~~d~~g~t~L--------~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~ 109 (351)
T 3utm_A 38 EKLMALLTPLNVNCHASDGRKSTPL--------HLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTEL 109 (351)
T ss_dssp HHHHHHCCTTTTTCCCSSTTCCCHH--------HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCCCcccCCCCCCCHH--------HHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHH
Confidence 44555564 888999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCC
Q 008477 85 LLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPL 125 (564)
Q Consensus 85 Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~ 125 (564)
|+++|++++..|..|.| +|+|+. +.+++++|+++|++++..
T Consensus 110 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 153 (351)
T 3utm_A 110 LLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV 153 (351)
T ss_dssp HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence 99999999999999987 788888 899999999999887653
No 107
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.64 E-value=1.3e-16 Score=135.30 Aligned_cols=106 Identities=25% Similarity=0.359 Sum_probs=95.8
Q ss_pred CCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCccCCC
Q 008477 20 ASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99 (564)
Q Consensus 20 ~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g 99 (564)
.+|..|.||| |+|+..|+.++++.|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++..|..|
T Consensus 4 ~~d~~g~t~L--------~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g 75 (115)
T 2l6b_A 4 WGSKDGNTPL--------HNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDG 75 (115)
T ss_dssp CCSCSSCCHH--------HHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTC
T ss_pred ccCCCCCCHH--------HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCC
Confidence 4688999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccc
Q 008477 100 DR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDT 135 (564)
Q Consensus 100 ~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~l 135 (564)
.| +|+|+. +.+++++|+++|++++..+ ..|.+|-
T Consensus 76 ~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~--~~~~~~~ 112 (115)
T 2l6b_A 76 NTPEHLAKKNGHHEIVKLLDAKGADVNARS--WGSSHHH 112 (115)
T ss_dssp CCTTHHHHTTTCHHHHHHHHTTSSSHHHHS--CCCC---
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCCCCcCC--ccccccc
Confidence 97 788888 8999999999999987755 5555553
No 108
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.64 E-value=9.3e-16 Score=151.01 Aligned_cols=131 Identities=18% Similarity=0.198 Sum_probs=117.6
Q ss_pred hhhHHhhcC-CCCCCCC-CCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHH
Q 008477 6 QSTIDAELD-EIDLDAS-DFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAAR 83 (564)
Q Consensus 6 ~~~l~~~~~-g~~v~~~-d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~ 83 (564)
...+...++ |++++.. +..|+||| |+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++++
T Consensus 18 ~~~v~~Ll~~g~~~~~~~~~~g~t~L--------~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 89 (285)
T 1wdy_A 18 VDLVQQLLEGGANVNFQEEEGGWTPL--------HNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLK 89 (285)
T ss_dssp HHHHHHHHHTTCCTTCCCTTTCCCHH--------HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHcCCCcccccCCCCCcHH--------HHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHH
Confidence 355666666 8999987 88899999 9999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCc--------cccccccchhccccccc
Q 008477 84 MLLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGP--------LQAALRDTFLGCGANRQ 144 (564)
Q Consensus 84 ~Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~--------~~~g~t~lh~A~~~~~~ 144 (564)
+|+++|++++..|..|.| +|+|+. +.+++++|+++|++++.... ...|.||+|.|+..++.
T Consensus 90 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~ 161 (285)
T 1wdy_A 90 LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161 (285)
T ss_dssp HHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH
T ss_pred HHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCH
Confidence 999999999999999998 788887 89999999999998876521 25689999999998874
No 109
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.64 E-value=1.3e-15 Score=130.62 Aligned_cols=108 Identities=33% Similarity=0.483 Sum_probs=99.6
Q ss_pred hhhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 008477 6 QSTIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 6 ~~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
...+...++ |++++..|..|.||| |+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++
T Consensus 15 ~~~v~~Ll~~~~~~~~~~~~g~t~L--------~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 86 (126)
T 1n0r_A 15 LEVVKLLLEAGADVNAKDKNGRTPL--------HLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86 (126)
T ss_dssp HHHHHHHHHHTCCTTCCCTTSCCHH--------HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcCCCCCcHH--------HHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHH
Confidence 345555666 999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCC
Q 008477 85 LLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEAR 121 (564)
Q Consensus 85 Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~ 121 (564)
|+++|++++..|..|.| +|+|+. +.+++++|+++|++
T Consensus 87 Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 87 LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 99999999999999998 677777 89999999999875
No 110
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.63 E-value=4.4e-16 Score=150.43 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=101.7
Q ss_pred hhhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 008477 6 QSTIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 6 ~~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
...+...++ |+++|.+|..|.||| |+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++
T Consensus 50 ~~~v~~Ll~~g~~~~~~d~~g~t~L--------~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~ 121 (239)
T 1ycs_B 50 FDLVQRIIYEVDDPSLPNDEGITAL--------HNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKF 121 (239)
T ss_dssp HHHHHHHTSTTSSCCCCCTTSCCHH--------HHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHH--------HHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHH
Confidence 355666776 899999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCccCCCC-c-hHHH--Hc--hHHHHHHHHhccCCCCCCC
Q 008477 85 LLESGAICSEHTFDGD-R-CHYA--AL--NLKVRKLLKAYEARPPPLG 126 (564)
Q Consensus 85 Ll~~ga~~~~~d~~g~-t-l~~a--a~--~~~i~~lLl~~~~~~~~~~ 126 (564)
|+++|++++..+..|. | +|.| +. +.+++++|+.+|++.+..+
T Consensus 122 Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~ 169 (239)
T 1ycs_B 122 LVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMN 169 (239)
T ss_dssp HHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTG
T ss_pred HHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccc
Confidence 9999999999998876 7 6666 33 6899999999998887654
No 111
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.63 E-value=1.1e-15 Score=137.73 Aligned_cols=108 Identities=28% Similarity=0.347 Sum_probs=98.1
Q ss_pred hhhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 008477 6 QSTIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 6 ~~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
...+...++ |++++.+|..|.||| |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus 50 ~~~v~~Ll~~g~~~~~~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 121 (162)
T 1ihb_A 50 PEIARRLLLRGANPDLKDRTGFAVI--------HDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121 (162)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHH--------HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHH--------HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 345555665 999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCCC-CCCccCCCCc-hHHHHc--hHHHHHHHHhccCC
Q 008477 85 LLESGAI-CSEHTFDGDR-CHYAAL--NLKVRKLLKAYEAR 121 (564)
Q Consensus 85 Ll~~ga~-~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~ 121 (564)
|+++|++ ++..|..|.| +|+|+. +.+++++|+++|++
T Consensus 122 Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 122 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp HHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred HHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 9999998 6999999998 788887 89999999999874
No 112
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.63 E-value=1.6e-15 Score=154.23 Aligned_cols=117 Identities=23% Similarity=0.192 Sum_probs=106.2
Q ss_pred CCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHH-cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCccC
Q 008477 19 DASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILE-SGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTF 97 (564)
Q Consensus 19 ~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~-~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~ 97 (564)
+..+..|.||| |.|+..|+.+.++.|+. .+++++.+|..|+||||+|+..|+.+++++|+++|++++..|.
T Consensus 18 ~~~~~~~~~~L--------~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~ 89 (351)
T 3utm_A 18 VLTGEYKKDEL--------LEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDK 89 (351)
T ss_dssp HHHHHHHHHHH--------HHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred eeeccccchhH--------HHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC
Confidence 33455677888 99999999999999887 5899999999999999999999999999999999999999999
Q ss_pred CCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccch
Q 008477 98 DGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQF 145 (564)
Q Consensus 98 ~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~~ 145 (564)
.|.| +|+|+. +.+++++|+++|++++..+ ..|.||||.|+..++..
T Consensus 90 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~~ 138 (351)
T 3utm_A 90 GGLVPLHNACSYGHYEVTELLLKHGACVNAMD--LWQFTPLHEAASKNRVE 138 (351)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTCCCHHHHHHHTTCHH
T ss_pred CCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCC--CCCCCHHHHHHHcCCHH
Confidence 9998 788888 8999999999999998876 78999999999988843
No 113
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.63 E-value=1e-15 Score=138.54 Aligned_cols=107 Identities=25% Similarity=0.378 Sum_probs=97.1
Q ss_pred hhhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 008477 6 QSTIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 6 ~~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
...+...++ |++++.+|..|+||| |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus 55 ~~~v~~Ll~~g~~~~~~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 126 (165)
T 3twr_A 55 VSVVEYLLQHGADVHAKDKGGLVPL--------HNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL 126 (165)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHH--------HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCCCCCccCCCCCCHH--------HHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 355566666 999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCccCCCCc-hHHHHc-hHHHHHHHHhccC
Q 008477 85 LLESGAICSEHTFDGDR-CHYAAL-NLKVRKLLKAYEA 120 (564)
Q Consensus 85 Ll~~ga~~~~~d~~g~t-l~~aa~-~~~i~~lLl~~~~ 120 (564)
|+++|++++.+|..|.| +|+|+. +.+++++|++.|+
T Consensus 127 Ll~~ga~~~~~~~~g~t~l~~a~~~~~~i~~~L~~~gA 164 (165)
T 3twr_A 127 LLQHGADPTKKNRDGNTPLDLVKDGDTDIQDLLRGDAA 164 (165)
T ss_dssp HHHTTCCTTCCCTTSCCTGGGSCTTCHHHHHHHHTC--
T ss_pred HHHcCCCCcccCCCCCChhHhHhcCChHHHHHHhhccc
Confidence 99999999999999998 666655 8899999998875
No 114
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.63 E-value=2.9e-16 Score=161.42 Aligned_cols=114 Identities=14% Similarity=0.126 Sum_probs=108.8
Q ss_pred CCCCCCCCCCCCCChhHHHHHhcC--CHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-----CC
Q 008477 21 SDFSSSVPLKKVPNGDVFEASRAG--DVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAI-----CS 93 (564)
Q Consensus 21 ~d~~g~tpL~~~~~~~l~~Aa~~g--~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~-----~~ 93 (564)
.|..|.||| |+|+..| +.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++ ++
T Consensus 134 ~~~~g~t~L--------~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~ 205 (364)
T 3ljn_A 134 KHCKGQTAL--------HWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLD 205 (364)
T ss_dssp EEESCCCHH--------HHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTT
T ss_pred CCCCCCCHH--------HHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccc
Confidence 888999999 9999999 99999999999999999999999999999999999999999999999 99
Q ss_pred CccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 94 EHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 94 ~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
..|..|.| +|+|+. +.+++++|+++|++++..+ ..|.||||+|+..++.
T Consensus 206 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d--~~g~tpL~~A~~~g~~ 257 (364)
T 3ljn_A 206 YANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMED--NEHTVPLYLSVRAAMV 257 (364)
T ss_dssp CCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCC--TTSCCHHHHHHHTCCH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC--CCCCCHHHHHHHhChH
Confidence 99999998 899998 8999999999999999877 8899999999998874
No 115
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.63 E-value=1.4e-15 Score=130.69 Aligned_cols=102 Identities=25% Similarity=0.347 Sum_probs=90.4
Q ss_pred hhhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 008477 6 QSTIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 6 ~~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
...+...++ |++++.+|..|+||| |+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++
T Consensus 20 ~~~v~~ll~~~~~~~~~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~ 91 (123)
T 3aaa_C 20 LDEVKDYVAKGEDVNRTLEGGRKPL--------HYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKL 91 (123)
T ss_dssp HHHHHHHHHTTCCTTSCCTTSSCHH--------HHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHcCCCcCccCCCCCcHH--------HHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHH
Confidence 345556665 899999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCccCCCCchHHHHchHHHHHHH
Q 008477 85 LLESGAICSEHTFDGDRCHYAALNLKVRKLL 115 (564)
Q Consensus 85 Ll~~ga~~~~~d~~g~tl~~aa~~~~i~~lL 115 (564)
|+++|++++..|..|.|+...|...++.++|
T Consensus 92 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~ll 122 (123)
T 3aaa_C 92 LLSKGADKTVKGPDGLTAFEATDNQAIKALL 122 (123)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHCCCHHHHHHH
T ss_pred HHHcCCCCCCcCCCCCCHHHHhCCHHHHHHh
Confidence 9999999999999999855555655555544
No 116
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.63 E-value=3.4e-16 Score=154.16 Aligned_cols=120 Identities=19% Similarity=0.119 Sum_probs=106.0
Q ss_pred CCCCC----CCCCCCCCCCCCCCChhHHHHHhc---CCHHHHHHHHHcCCC-------ccc----cCCCCCcHHHHHHHc
Q 008477 15 EIDLD----ASDFSSSVPLKKVPNGDVFEASRA---GDVDRLRYILESGVN-------VNA----RDQWDSVALYYACLA 76 (564)
Q Consensus 15 g~~v~----~~d~~g~tpL~~~~~~~l~~Aa~~---g~~~~v~~Ll~~g~~-------~n~----~d~~g~TpL~~A~~~ 76 (564)
+++++ ..|..|+||| |+|+.. |+.+++++|++.|++ +|. +|..|+||||+|+..
T Consensus 40 ~~~~~~~~~~~~~~g~tpL--------~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~ 111 (273)
T 2pnn_A 40 KKRLTDSEFKDPETGKTCL--------LKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIER 111 (273)
T ss_dssp CCCTTSGGGSCTTTCCCHH--------HHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHT
T ss_pred ccccCCcccccCcCCCCHH--------HHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHc
Confidence 66666 4688999999 999987 999999999998865 233 567899999999999
Q ss_pred CCHHHHHHHHhCCCCCCCccC--------------CCCc-hHHHHc--hHHHHHHHHh---ccCCCCCCCccccccccch
Q 008477 77 GHLDAARMLLESGAICSEHTF--------------DGDR-CHYAAL--NLKVRKLLKA---YEARPPPLGPLQAALRDTF 136 (564)
Q Consensus 77 g~~~~v~~Ll~~ga~~~~~d~--------------~g~t-l~~aa~--~~~i~~lLl~---~~~~~~~~~~~~~g~t~lh 136 (564)
|+.+++++|+++|++++..+. .|.| +|+|+. +.+++++|++ +|++++..+ ..|.||||
T Consensus 112 g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d--~~g~tpLh 189 (273)
T 2pnn_A 112 RNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARD--SVGNTVLH 189 (273)
T ss_dssp TCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCC--TTSCCHHH
T ss_pred CCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeC--CCCCcHHH
Confidence 999999999999999999987 6877 888888 8999999999 899999877 88999999
Q ss_pred hccccccc
Q 008477 137 LGCGANRQ 144 (564)
Q Consensus 137 ~A~~~~~~ 144 (564)
+|+..++.
T Consensus 190 ~A~~~~~~ 197 (273)
T 2pnn_A 190 ALVEVADN 197 (273)
T ss_dssp HHHHHCCS
T ss_pred HHHHccCc
Confidence 99987763
No 117
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.63 E-value=3.9e-16 Score=154.29 Aligned_cols=158 Identities=13% Similarity=0.152 Sum_probs=128.3
Q ss_pred CCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCC-CccccCCCCCcHHHHHH-----HcCCHHHHHHHHhCCCC
Q 008477 18 LDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGV-NVNARDQWDSVALYYAC-----LAGHLDAARMLLESGAI 91 (564)
Q Consensus 18 v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~-~~n~~d~~g~TpL~~A~-----~~g~~~~v~~Ll~~ga~ 91 (564)
+|.+|..|+||| |+|+..|+.+++++|++.|+ +++..|..|+||||+|+ ..++.+++++|++.|++
T Consensus 104 ~n~~d~~g~T~L--------h~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~ 175 (276)
T 4hbd_A 104 VNIADSNGNTAL--------HYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNI 175 (276)
T ss_dssp HTCCCTTSCCHH--------HHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCT
T ss_pred CcCCCCCCCCHH--------HHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCC
Confidence 889999999999 99999999999999999998 99999999999999999 66889999999999999
Q ss_pred CCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccchhhhhHHhhcccccccCCCCCCCC
Q 008477 92 CSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVVLGISGVTSNGASNSDS 168 (564)
Q Consensus 92 ~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~ 168 (564)
++..+..|.| +|+|+. +.+++++|+++|++++..+ ..|.||||+|+..++....+... ..
T Consensus 176 ~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d--~~G~TpLh~A~~~g~~~iv~~Ll--------~~------- 238 (276)
T 4hbd_A 176 NAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQD--DDGSTALMCACEHGHKEIAGLLL--------AV------- 238 (276)
T ss_dssp TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHHTCHHHHHHHH--------TS-------
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCCCHHHHHHHCCCHHHHHHHH--------hc-------
Confidence 9999999988 788888 8999999999999999877 89999999999988853332221 10
Q ss_pred CCCCeEEEecCeeechhhHhhcccChhHHHhc
Q 008477 169 FPPDVVFYVQGRPIEAHRVILSARSVFFRRKF 200 (564)
Q Consensus 169 ~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~l~ 200 (564)
...|+...-..+.-+.|-++........+-++
T Consensus 239 ~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll 270 (276)
T 4hbd_A 239 PSCDISLTDRDGSTALMVALDAGQSEIASMLY 270 (276)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred CCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 01233333334556777776666555555544
No 118
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.62 E-value=3.1e-16 Score=153.09 Aligned_cols=119 Identities=16% Similarity=0.074 Sum_probs=105.2
Q ss_pred CCCCCCCC----CCCCCCCCCCCChhHHHHH---hcCCHHHHHHHHHcCCC-----------ccccCCCCCcHHHHHHHc
Q 008477 15 EIDLDASD----FSSSVPLKKVPNGDVFEAS---RAGDVDRLRYILESGVN-----------VNARDQWDSVALYYACLA 76 (564)
Q Consensus 15 g~~v~~~d----~~g~tpL~~~~~~~l~~Aa---~~g~~~~v~~Ll~~g~~-----------~n~~d~~g~TpL~~A~~~ 76 (564)
|++++..+ ..|.||| |+|+ ..|+.+++++|++.|++ ++..|..|+||||+|+..
T Consensus 32 ~~~~~~~~~~~~~~g~t~L--------~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~ 103 (260)
T 3jxi_A 32 KKRLTDEEFREPSTGKTCL--------PKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIER 103 (260)
T ss_dssp TCCTTSGGGSCTTTCCCHH--------HHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHT
T ss_pred CCCcchhhhhccCCCCcHH--------HHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHc
Confidence 78888665 7799999 9999 67999999999998744 445566899999999999
Q ss_pred CCHHHHHHHHhCCCCCCCcc--------------CCCCc-hHHHHc--hHHHHHHHHh---ccCCCCCCCccccccccch
Q 008477 77 GHLDAARMLLESGAICSEHT--------------FDGDR-CHYAAL--NLKVRKLLKA---YEARPPPLGPLQAALRDTF 136 (564)
Q Consensus 77 g~~~~v~~Ll~~ga~~~~~d--------------~~g~t-l~~aa~--~~~i~~lLl~---~~~~~~~~~~~~~g~t~lh 136 (564)
|+.+++++|+++|++++..+ ..|.| +|+|+. +.+++++|++ +|++++..+ ..|.||||
T Consensus 104 g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d--~~g~TpLh 181 (260)
T 3jxi_A 104 RCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQD--SRGNTVLH 181 (260)
T ss_dssp TCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCC--TTSCCHHH
T ss_pred CCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccC--CCCCcHHH
Confidence 99999999999999999998 57887 888888 8999999999 899998877 88999999
Q ss_pred hcccccc
Q 008477 137 LGCGANR 143 (564)
Q Consensus 137 ~A~~~~~ 143 (564)
+|+..++
T Consensus 182 ~A~~~~~ 188 (260)
T 3jxi_A 182 ALVAIAD 188 (260)
T ss_dssp HHHHHCC
T ss_pred HHHHhcc
Confidence 9997665
No 119
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.62 E-value=3e-16 Score=152.14 Aligned_cols=108 Identities=25% Similarity=0.219 Sum_probs=100.2
Q ss_pred CCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcc-CCCCc
Q 008477 23 FSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT-FDGDR 101 (564)
Q Consensus 23 ~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~t 101 (564)
..|.||| |+|+..|+.++++.|++ |+++|.+|..|+||||+|+..|+.+++++|+++|++++..+ ..|.|
T Consensus 43 ~~g~t~L--------~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t 113 (244)
T 3ui2_A 43 SEYETPW--------WTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLT 113 (244)
T ss_dssp HHHHHHH--------HHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCC
T ss_pred cCCCCHH--------HHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 4567788 99999999999999999 99999999999999999999999999999999999999888 77887
Q ss_pred -hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhcccc
Q 008477 102 -CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGA 141 (564)
Q Consensus 102 -l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~ 141 (564)
+|+|+. +.+++++|+++|++++..+ ..|.||+|+|+..
T Consensus 114 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~d--~~g~t~l~~A~~~ 154 (244)
T 3ui2_A 114 ALHMAAGYVRPEVVEALVELGADIEVED--ERGLTALELAREI 154 (244)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTCCCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCC--CCCCcHHHHHHHH
Confidence 888888 8999999999999999877 8899999999853
No 120
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.62 E-value=1.9e-15 Score=138.89 Aligned_cols=113 Identities=19% Similarity=0.265 Sum_probs=102.9
Q ss_pred hhhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 008477 6 QSTIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 6 ~~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
...+...++ |++++.+|..|.||| |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus 52 ~~~v~~Ll~~g~~~~~~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~ 123 (179)
T 3f6q_A 52 SAVVEMLIMRGARINVMNRGDDTPL--------HLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAED 123 (179)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHH--------HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHH--------HHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHH
Confidence 345555665 999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCC
Q 008477 85 LLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLG 126 (564)
Q Consensus 85 Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~ 126 (564)
|+++|++++..|..|.| +++|+. +.+++++|+++|++++...
T Consensus 124 Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~ 168 (179)
T 3f6q_A 124 LVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIP 168 (179)
T ss_dssp HHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBC
T ss_pred HHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCC
Confidence 99999999999999998 666666 7889999999999887643
No 121
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.62 E-value=5.2e-15 Score=141.84 Aligned_cols=128 Identities=20% Similarity=0.185 Sum_probs=113.2
Q ss_pred hhhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccC-CCCCcHHHHHHHcCCHHHHH
Q 008477 6 QSTIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARD-QWDSVALYYACLAGHLDAAR 83 (564)
Q Consensus 6 ~~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d-~~g~TpL~~A~~~g~~~~v~ 83 (564)
...+...++ |++++.++..|.||| |+|+..|+.+++++|++.|++++..+ ..|+||||+|+..|+.++++
T Consensus 22 ~~~~~~Ll~~g~~~~~~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~ 93 (240)
T 3eu9_A 22 YERCRELVEAGYDVRQPDKENVTLL--------HWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVV 93 (240)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHH--------HHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHcCCCcCCCCCCCCCHH--------HHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHH
Confidence 355666666 899999999999999 99999999999999999999987655 55999999999999999999
Q ss_pred HHHhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhcccccc
Q 008477 84 MLLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANR 143 (564)
Q Consensus 84 ~Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~ 143 (564)
+|++.|++++..+..|.| +|+|+. +.+++++|+++|++++..+ ..|.||+|.|+..++
T Consensus 94 ~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~--~~g~t~l~~a~~~~~ 154 (240)
T 3eu9_A 94 QLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD--QNGMTPLMWAAYRTH 154 (240)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHHCC
T ss_pred HHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccC--CCCCcHHHHHHHhCC
Confidence 999999999999999987 788887 8899999999999888866 789999999996665
No 122
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.62 E-value=5.6e-16 Score=131.85 Aligned_cols=85 Identities=21% Similarity=0.364 Sum_probs=77.0
Q ss_pred CCCCCeEEEecCeeechhhHhhcccChhHHHhccccccccccceEEcCCCCHHHHHHHhhhHccCCc-cCCcccHHHHHH
Q 008477 168 SFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRL-EIAVDDMEDLVK 246 (564)
Q Consensus 168 ~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~l~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~-~i~~~~~~~ll~ 246 (564)
+.+|||+|.++|+.|+|||.||+++|+||++||.++ ...|.++++++++|+.+++|+|||++ .++.+++.+++.
T Consensus 29 ~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~~~~~~~ll~ 103 (116)
T 3fkc_A 29 GLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIK 103 (116)
T ss_dssp TTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHTTSCCCSCCHHHHHHHHH
T ss_pred CCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHhhcCCCcCCCCHHHHHHHHH
Confidence 456799999999999999999999999999999865 45788899999999999999999999 799999999999
Q ss_pred HHhHhcHHHHH
Q 008477 247 ICKVCKCESLQ 257 (564)
Q Consensus 247 ~a~~c~~~~L~ 257 (564)
+|+.++++.|+
T Consensus 104 ~A~~l~i~~L~ 114 (116)
T 3fkc_A 104 SGQLLGVKFIA 114 (116)
T ss_dssp HHHHHTCHHHH
T ss_pred HHHHhCccccC
Confidence 99888666654
No 123
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.62 E-value=1.1e-16 Score=138.28 Aligned_cols=86 Identities=17% Similarity=0.364 Sum_probs=77.6
Q ss_pred CCCCCeEEEecCeeechhhHhhcccChhHHHhccccccccccceEEcCC-CCHHHHHHHhhhHccCCccCCcccHHHHHH
Q 008477 168 SFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREK-LSYPALYGLIHFFYSDRLEIAVDDMEDLVK 246 (564)
Q Consensus 168 ~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~l~~~~~~e~~~~~i~l~~-v~~~~~~~lL~ylYtg~~~i~~~~~~~ll~ 246 (564)
+.+|||+|.++|+.|+|||.||+++|+||++||.+.+.+ ...|.+++ +++++|+.+++|+|||++.++.+++.+++.
T Consensus 30 ~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~~~~~~f~~~l~~iYtg~~~~~~~~v~~ll~ 107 (125)
T 3ohu_A 30 DILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIR 107 (125)
T ss_dssp TCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCTTCCHHHHHHHHHHHTTSEEEECTTTHHHHHH
T ss_pred CCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCCCCCHHHHHHHHHhHcCCceEECHHHHHHHHH
Confidence 456799999999999999999999999999999998876 56788888 999999999999999999999999999999
Q ss_pred HHhHhcHHH
Q 008477 247 ICKVCKCES 255 (564)
Q Consensus 247 ~a~~c~~~~ 255 (564)
+|+.++++.
T Consensus 108 ~A~~l~i~~ 116 (125)
T 3ohu_A 108 CAEFLRMHN 116 (125)
T ss_dssp HHHHHTBSS
T ss_pred HHHHhCCHH
Confidence 997664443
No 124
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.61 E-value=3.2e-15 Score=147.16 Aligned_cols=128 Identities=21% Similarity=0.215 Sum_probs=116.1
Q ss_pred hhhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 008477 6 QSTIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 6 ~~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
...+...++ |++++.+|..|.||| |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus 52 ~~~v~~Ll~~g~~~~~~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 123 (285)
T 1wdy_A 52 EDIVELLLRHGADPVLRKKNGATPF--------LLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123 (285)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHH--------HHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCCCcccCCCCCCHH--------HHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHH
Confidence 345555665 999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCc----------cCCCCc-hHHHHc--hHHHHHHHHhc-cCCCCCCCccccccccchhcccccc
Q 008477 85 LLESGAICSEH----------TFDGDR-CHYAAL--NLKVRKLLKAY-EARPPPLGPLQAALRDTFLGCGANR 143 (564)
Q Consensus 85 Ll~~ga~~~~~----------d~~g~t-l~~aa~--~~~i~~lLl~~-~~~~~~~~~~~~g~t~lh~A~~~~~ 143 (564)
|+++|++++.. +..|.| +|+|+. +.+++++|++. |.+++..+ ..|.||+|.|+..++
T Consensus 124 Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~--~~g~t~l~~a~~~~~ 194 (285)
T 1wdy_A 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD--NMGRNALIHALLSSD 194 (285)
T ss_dssp HHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCC--TTSCCHHHHHHHCSC
T ss_pred HHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccC--CCCCCHHHHHHHccc
Confidence 99999999987 677877 788888 88999999987 99888876 789999999998777
No 125
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.61 E-value=4.4e-16 Score=133.28 Aligned_cols=88 Identities=18% Similarity=0.369 Sum_probs=74.6
Q ss_pred CCCCCeEEEecCeeechhhHhhcccChhHHHhccccccccccceEEcCCCCHHHHHHHhhhHccCCccCCcccHHHHHHH
Q 008477 168 SFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDLVKI 247 (564)
Q Consensus 168 ~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~l~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~~~~~ll~~ 247 (564)
+.+|||+|.++|+.|+|||.||+++|+||++||.++ ...+.++++++++|+.+++|+|||++.++.+++.+++.+
T Consensus 25 ~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~~~Ytg~~~i~~~~~~~ll~~ 99 (119)
T 2q81_A 25 GLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ-----KDVVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAV 99 (119)
T ss_dssp TCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC-----CSGGGGGGCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHH
T ss_pred CCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Confidence 456799999999999999999999999999999862 345677889999999999999999999999998888888
Q ss_pred HhHhcHHHHHHHH
Q 008477 248 CKVCKCESLQRII 260 (564)
Q Consensus 248 a~~c~~~~L~~~l 260 (564)
|+.++++.|.+.+
T Consensus 100 A~~l~i~~L~~~C 112 (119)
T 2q81_A 100 ATFLQMQDIITAC 112 (119)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHHhCCHHHHHHH
Confidence 8766454444433
No 126
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.60 E-value=9.2e-16 Score=130.95 Aligned_cols=86 Identities=19% Similarity=0.243 Sum_probs=75.5
Q ss_pred CCCCCCeEEEecCeeechhhHhhcccChhHHHhccccccccccceEEcCCCCHHHHHHHhhhHccCCccCCcccHHHHHH
Q 008477 167 DSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVDDMEDLVK 246 (564)
Q Consensus 167 ~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~l~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~~~~~ll~ 246 (564)
++.+|||+|.++|++|+|||.||+++|+||++ ....+.++++++++|+.+|+|+|||++.++.+++.+++.
T Consensus 27 ~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l~~v~~~~f~~ll~fiYtg~~~i~~~~v~~ll~ 97 (119)
T 3m5b_A 27 RPALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------RGQWALGEGISPSTFAQLLNFVYGESVELQPGELRPLQE 97 (119)
T ss_dssp TTTTCCEEEEETTEEEEECHHHHHTTCGGGCC---------CEEEECCSSCCHHHHHHHHHHHTTCCEEECGGGHHHHHH
T ss_pred cCCCcceEEEECCEEEeeEHHHHHHcCHHHhc---------CCCEEEeCCCCHHHHHHHHHHHcCCCcCcCHHHHHHHHH
Confidence 36788999999999999999999999999974 245788999999999999999999999999999999999
Q ss_pred HHhHhcHHHHHHHHH
Q 008477 247 ICKVCKCESLQRIIE 261 (564)
Q Consensus 247 ~a~~c~~~~L~~~l~ 261 (564)
+|+.++++.+.+.++
T Consensus 98 aA~~l~i~~l~~~C~ 112 (119)
T 3m5b_A 98 AARALGVQSLEEACW 112 (119)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHhCCHHHHHHHH
Confidence 998776666655544
No 127
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.60 E-value=1.6e-16 Score=137.00 Aligned_cols=88 Identities=20% Similarity=0.418 Sum_probs=74.8
Q ss_pred CCCCCeEEEecCeeechhhHhhcccChhHHHhccccccccccceEEc-CCCCHHHHHHHhhhHccCCccCCcccHHHHHH
Q 008477 168 SFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSR-EKLSYPALYGLIHFFYSDRLEIAVDDMEDLVK 246 (564)
Q Consensus 168 ~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~l~~~~~~e~~~~~i~l-~~v~~~~~~~lL~ylYtg~~~i~~~~~~~ll~ 246 (564)
+.+|||+|.++|+.|+|||.||+++|+||++||.+++.+. ..+.+ .++++++|+.+|+|+|||.+.++.+++.+++.
T Consensus 27 ~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~~~v~~~~f~~lL~~iYtg~~~i~~~~v~~ll~ 104 (124)
T 2ihc_A 27 DVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCK 104 (124)
T ss_dssp TCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECCTTSCHHHHHHHHHHHHHSEEEEETTTHHHHHH
T ss_pred CCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeecCCcCHHHHHHHHHHhcCCCcccCHHHHHHHHH
Confidence 4567999999999999999999999999999999988764 46777 58999999999999999999999999999999
Q ss_pred HHhHhcHHHHH
Q 008477 247 ICKVCKCESLQ 257 (564)
Q Consensus 247 ~a~~c~~~~L~ 257 (564)
+|+.++++.|.
T Consensus 105 ~A~~~~~~~L~ 115 (124)
T 2ihc_A 105 CVEFLSVHNIE 115 (124)
T ss_dssp HHHHHTBSSCC
T ss_pred HHHHHCCHHHH
Confidence 99666444433
No 128
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.60 E-value=1.6e-15 Score=162.71 Aligned_cols=118 Identities=17% Similarity=0.226 Sum_probs=98.2
Q ss_pred hhHHhhcC-CCCCCCC------CCCCCCCCCCCCChhHHHHHh---cCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHc
Q 008477 7 STIDAELD-EIDLDAS------DFSSSVPLKKVPNGDVFEASR---AGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76 (564)
Q Consensus 7 ~~l~~~~~-g~~v~~~------d~~g~tpL~~~~~~~l~~Aa~---~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~ 76 (564)
..+...++ |+++|.. |..|.||| |+|+. .|+.+++++|+++|+++|.+|..|+||||+|+..
T Consensus 146 ~~v~~ll~~g~~~n~~~~~~~~~~~g~t~L--------h~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~ 217 (497)
T 3lvq_E 146 LSVLEAFANGQDFGQPLPGPDAQAPEELVL--------HLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALY 217 (497)
T ss_dssp HHHHHHHHTTCCSSSCBCCSSSCCSCBCHH--------HHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHTTT
T ss_pred HHHHHHHhhcccccCCCCCcccccccchHH--------HHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHHHHHc
Confidence 44556665 8999987 89999999 99965 8999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccc
Q 008477 77 GHLDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCG 140 (564)
Q Consensus 77 g~~~~v~~Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~ 140 (564)
|+.+++++|+++||+++..|..|.| +|+|+. +.+++++|+++|++++. +|+|.++.
T Consensus 218 g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~--------~~~h~~~~ 276 (497)
T 3lvq_E 218 NQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA--------FPLHVDYS 276 (497)
T ss_dssp TCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC--------------------
T ss_pred CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC--------Ccceeecc
Confidence 9999999999999999999999998 788887 89999999999998754 56776553
No 129
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.59 E-value=4.9e-15 Score=132.62 Aligned_cols=104 Identities=20% Similarity=0.262 Sum_probs=95.6
Q ss_pred hhhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 008477 6 QSTIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 6 ~~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
...+...++ |++++.+|..|.||| |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus 48 ~~~v~~Ll~~g~~~~~~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 119 (156)
T 1bd8_A 48 TAIALELLKQGASPNVQDTSGTSPV--------HDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119 (156)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHH--------HHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHH--------HHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHH
Confidence 345555665 999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhc
Q 008477 85 LLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAY 118 (564)
Q Consensus 85 Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~ 118 (564)
|+++ ++++..|..|.| +|+|+. +.+++++|+++
T Consensus 120 Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 120 LAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred HHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 9999 999999999998 788887 89999999864
No 130
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.59 E-value=5.1e-15 Score=132.29 Aligned_cols=102 Identities=24% Similarity=0.290 Sum_probs=94.0
Q ss_pred hhhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 008477 6 QSTIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 6 ~~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
...+...++ |++++.+|..|+||| |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus 47 ~~~v~~Ll~~g~~~~~~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 118 (153)
T 1awc_B 47 FSTTEVLLRAGVSRDARTKVDRTPL--------HMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVEL 118 (153)
T ss_dssp HHHHHHHHTTTCCTTCCCTTCCCHH--------HHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHH--------HHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 345566666 999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCccCCCCc-hHHHHc--hHHHHHHH
Q 008477 85 LLESGAICSEHTFDGDR-CHYAAL--NLKVRKLL 115 (564)
Q Consensus 85 Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lL 115 (564)
|+++|++++..|..|.| +|+|+. +.+++++|
T Consensus 119 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 119 LIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 99999999999999998 677777 78888876
No 131
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.58 E-value=1.6e-15 Score=132.86 Aligned_cols=104 Identities=23% Similarity=0.276 Sum_probs=89.7
Q ss_pred hhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 008477 7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML 85 (564)
Q Consensus 7 ~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~L 85 (564)
..+...++ |++++.+|..|+||| |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus 24 ~~~~~Ll~~g~~~~~~~~~g~t~L--------~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 95 (137)
T 3c5r_A 24 PSVEYLLQNGSDPNVKDHAGWTPL--------HEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLL 95 (137)
T ss_dssp HHHHHHHHTTCCSCCCCTTSCCHH--------HHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCCCCcCCCCCCCHH--------HHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 44555565 999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhc
Q 008477 86 LESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAY 118 (564)
Q Consensus 86 l~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~ 118 (564)
+++|++++..|..|.| +|+|+. ..+++.+|.+.
T Consensus 96 l~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~ 131 (137)
T 3c5r_A 96 LSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN 131 (137)
T ss_dssp HHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred HHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence 9999999999999998 566655 44555544443
No 132
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.58 E-value=5.7e-15 Score=146.01 Aligned_cols=106 Identities=18% Similarity=0.250 Sum_probs=95.4
Q ss_pred HHhhcC-CCC------CCCCCCCCCCCCCCCCChhHHHHHhc---CCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCC
Q 008477 9 IDAELD-EID------LDASDFSSSVPLKKVPNGDVFEASRA---GDVDRLRYILESGVNVNARDQWDSVALYYACLAGH 78 (564)
Q Consensus 9 l~~~~~-g~~------v~~~d~~g~tpL~~~~~~~l~~Aa~~---g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~ 78 (564)
+...+. |++ ++..|..|.||| |+|+.. |+.+++++|+++|+++|.+|..|+||||+|+..|+
T Consensus 146 ~~~ll~~g~~~~~~~~l~~~~~~g~t~L--------h~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~ 217 (278)
T 1dcq_A 146 LLQAYADGVDLTEKIPLANGHEPDETAL--------HLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN 217 (278)
T ss_dssp HHHHHHTTCCTTSBCCCSSCSSTTCBHH--------HHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHHhhcchhhhccccccccCCCCcc--------hHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCC
Confidence 333443 666 556689999999 999999 89999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCC
Q 008477 79 LDAARMLLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARP 122 (564)
Q Consensus 79 ~~~v~~Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~ 122 (564)
.+++++|+++|++++.+|..|.| +|+|+. +.+++++|+++|++.
T Consensus 218 ~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 218 AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 99999999999999999999998 788887 899999999998754
No 133
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.58 E-value=5.4e-15 Score=141.73 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=87.7
Q ss_pred hhHHhhcC-CCCCCCCC-CCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 008477 7 STIDAELD-EIDLDASD-FSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 7 ~~l~~~~~-g~~v~~~d-~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
..+...++ |.+++..+ ..|.||| |+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++
T Consensus 56 ~~v~~Ll~~~~~~~~~~~~~~~t~L--------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 127 (240)
T 3eu9_A 56 DLVKYYISKGAIVDQLGGDLNSTPL--------HWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAY 127 (240)
T ss_dssp HHHHHHHHTTCCTTCCBTTTTBCHH--------HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCcchhhcCCcCCChh--------HHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHH
Confidence 44444454 66665443 3477777 77777777777777777777777777777777777777777777777
Q ss_pred HHhCCCCCCCccCCCCc-hHHHHc---hHHHHHHHHhccCCCCCCCccc-cccccchhccccccc
Q 008477 85 LLESGAICSEHTFDGDR-CHYAAL---NLKVRKLLKAYEARPPPLGPLQ-AALRDTFLGCGANRQ 144 (564)
Q Consensus 85 Ll~~ga~~~~~d~~g~t-l~~aa~---~~~i~~lLl~~~~~~~~~~~~~-~g~t~lh~A~~~~~~ 144 (564)
|+++|++++..+..|.| +|+|+. ..+++++|+..|++++..+ . .|.||||.|+..++.
T Consensus 128 Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~--~~~g~t~L~~A~~~~~~ 190 (240)
T 3eu9_A 128 LIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGD--KYHKNTALHWAVLAGNT 190 (240)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCC--TTTCCCHHHHHHHHTCH
T ss_pred HHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhh--ccCCCcHHHHHHHcCCH
Confidence 77777777777777766 566664 3566777777777666544 3 566777777776663
No 134
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.58 E-value=3.6e-15 Score=153.95 Aligned_cols=120 Identities=18% Similarity=0.180 Sum_probs=107.2
Q ss_pred CCCCCCCCCCCCCCCCCCChhHHHHHhcC---CHHHHHHHHHcCCCccc--------cCCCCCcHHHHHHHcCCHHHHHH
Q 008477 16 IDLDASDFSSSVPLKKVPNGDVFEASRAG---DVDRLRYILESGVNVNA--------RDQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 16 ~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g---~~~~v~~Ll~~g~~~n~--------~d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
++++..|..|.||| |+|+..| +.+++++|++.|++++. .|..|+||||+|+..|+.+++++
T Consensus 226 ~~~~~~d~~g~t~L--------~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~ 297 (373)
T 2fo1_E 226 GDIEELDRNGMTAL--------MIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKY 297 (373)
T ss_dssp HTTSCCCTTSCCHH--------HHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHH
T ss_pred cChhhcCCCCCCHH--------HHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHH
Confidence 56666777777777 9999988 89999999999999886 57799999999999999999999
Q ss_pred HHhCC-CCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccch
Q 008477 85 LLESG-AICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQF 145 (564)
Q Consensus 85 Ll~~g-a~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~~ 145 (564)
|+++| ++++..|..|.| +|+|+. +.+++++|+++|++++..+ ..|.||+|+|+..++..
T Consensus 298 Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d--~~g~t~l~~A~~~g~~~ 360 (373)
T 2fo1_E 298 LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVD--ATDHTARQLAQANNHHN 360 (373)
T ss_dssp HHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCC--SSSCCHHHHHHHTTCHH
T ss_pred HHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCC--CCCCCHHHHHHHcCCHH
Confidence 99876 999999999998 788888 8999999999999999877 88999999999988843
No 135
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.57 E-value=1.4e-15 Score=132.17 Aligned_cols=82 Identities=24% Similarity=0.401 Sum_probs=73.7
Q ss_pred CCCCCeEEEecCeeechhhHhhcccChhHHHhccccccccccceEEcC-CCCHHHHHHHhhhHccCCccCCcccHHHHHH
Q 008477 168 SFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSRE-KLSYPALYGLIHFFYSDRLEIAVDDMEDLVK 246 (564)
Q Consensus 168 ~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~l~~~~~~e~~~~~i~l~-~v~~~~~~~lL~ylYtg~~~i~~~~~~~ll~ 246 (564)
+.+|||+|.++|+.|+|||.||+++|+||++||.++ ....|.++ ++++++|+.+++|+|||++.++.+++.+++.
T Consensus 31 ~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~~~~~~~ll~ 106 (129)
T 3ga1_A 31 GLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMY 106 (129)
T ss_dssp TCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEECCTTCCHHHHHHHHHHHHHSEEECCTTTHHHHHH
T ss_pred CCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEECCCCCHHHHHHHHHHHhCCccccCHHHHHHHHH
Confidence 456799999999999999999999999999999876 55678996 9999999999999999999999999999888
Q ss_pred HHhHhcH
Q 008477 247 ICKVCKC 253 (564)
Q Consensus 247 ~a~~c~~ 253 (564)
+|+.+++
T Consensus 107 ~A~~~~i 113 (129)
T 3ga1_A 107 TAGFLQI 113 (129)
T ss_dssp HHHHTTB
T ss_pred HHHHhCC
Confidence 8866533
No 136
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.57 E-value=4e-15 Score=153.64 Aligned_cols=165 Identities=15% Similarity=0.044 Sum_probs=132.8
Q ss_pred CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC---CC
Q 008477 15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESG---AI 91 (564)
Q Consensus 15 g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g---a~ 91 (564)
|+++|.+|..|.||| |+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++| ++
T Consensus 156 ga~vn~~d~~g~TpL--------~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~ 227 (373)
T 2fo1_E 156 GADVNAMDCDENTPL--------MLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD 227 (373)
T ss_dssp CCCTTCCCTTSCCHH--------HHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHT
T ss_pred CCCCcCCCCCCCCHH--------HHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccC
Confidence 999999999999999 9999999999999999999999999999999999999999999999999998 89
Q ss_pred CCCccCCCCc-hHHHHc-----hHHHHHHHHhccCCCCCCC------ccccccccchhccccccchhhhhHHhhcccccc
Q 008477 92 CSEHTFDGDR-CHYAAL-----NLKVRKLLKAYEARPPPLG------PLQAALRDTFLGCGANRQFLEEAEVVLGISGVT 159 (564)
Q Consensus 92 ~~~~d~~g~t-l~~aa~-----~~~i~~lLl~~~~~~~~~~------~~~~g~t~lh~A~~~~~~~l~~~~~~~~~~~l~ 159 (564)
++..|..|.| +|+|+. +.+++++|+++|++++... ....|.||||.|+..++..+.+......-.
T Consensus 228 ~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~--- 304 (373)
T 2fo1_E 228 IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS--- 304 (373)
T ss_dssp TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCC---
T ss_pred hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCC---
Confidence 9999999998 788886 5789999999999887532 124789999999998885333332211101
Q ss_pred cCCCCCCCCCCCCeEEEecCeeechhhHhhcccChhHHHhccc
Q 008477 160 SNGASNSDSFPPDVVFYVQGRPIEAHRVILSARSVFFRRKFET 202 (564)
Q Consensus 160 ~~~~~~~~~~~~Dv~~~v~~~~~~~Hk~iL~a~S~~f~~l~~~ 202 (564)
|+...-..+.-+.|.++....-..++-++..
T Consensus 305 ------------~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 335 (373)
T 2fo1_E 305 ------------NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 335 (373)
T ss_dssp ------------CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred ------------CccCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 2222222345678888877777777777654
No 137
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.57 E-value=3.1e-15 Score=142.48 Aligned_cols=112 Identities=20% Similarity=0.236 Sum_probs=91.4
Q ss_pred hhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHc-CCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 008477 7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILES-GVNVNARDQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 7 ~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~-g~~~n~~d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
..+...++ |+++|.+|..|+||| |+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++
T Consensus 87 ~~v~~Ll~~g~~~~~~~~~g~t~L--------~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~ 158 (222)
T 3ehr_A 87 SWLRECLDNRVGVNGLDKAGSTAL--------YWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQL 158 (222)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHH--------HHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhCCCCccccCCCCCCHH--------HHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence 45556665 999999999999999 999999999999999998 99999999999999999999999999999
Q ss_pred HHhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCC
Q 008477 85 LLESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLG 126 (564)
Q Consensus 85 Ll~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~ 126 (564)
|+++|++++..|..|.| +|+|+. +.++++.|+..++.....+
T Consensus 159 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~ 203 (222)
T 3ehr_A 159 LLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSN 203 (222)
T ss_dssp HHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------------
T ss_pred HHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccc
Confidence 99999999999999998 677766 7788888888888776544
No 138
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.57 E-value=2.3e-14 Score=145.47 Aligned_cols=121 Identities=25% Similarity=0.288 Sum_probs=106.9
Q ss_pred CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCcccc----------CCCCCcHHHHHHHcCCHHHHHH
Q 008477 15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNAR----------DQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 15 g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~----------d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
+++++..|..|.||+ |+|+..|+.++++.|+++|++++.. +..|.||||+|+..|+.+++++
T Consensus 115 ~~~~~~~d~~g~t~l--------~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~ 186 (337)
T 4g8k_A 115 GADVNECDFYGFTAF--------MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI 186 (337)
T ss_dssp TCCTTCBCTTCCBHH--------HHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHH
T ss_pred cchhhhhccCCCCHH--------HHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHH
Confidence 778888889999999 9999999999999999999998754 4568999999999999999999
Q ss_pred HHh-CCCCCCCccCCCCc-hHHHHc------hHHHHHHHHhccCCCCCCCccccccccchhccccccch
Q 008477 85 LLE-SGAICSEHTFDGDR-CHYAAL------NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQF 145 (564)
Q Consensus 85 Ll~-~ga~~~~~d~~g~t-l~~aa~------~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~~ 145 (564)
|++ .|++++..|..|.+ +|.++. ...++++|+++|++++..+ ..|.||||.|+..++..
T Consensus 187 LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d--~~g~t~L~~a~~~~~~~ 253 (337)
T 4g8k_A 187 LLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG--ERGKTPLILAVEKKHLG 253 (337)
T ss_dssp HHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCC--GGGCCHHHHHHHTTCHH
T ss_pred HHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcC--CCCCCHHHHHHHhhhhH
Confidence 995 69999999999997 666655 2568899999999999877 88999999999988753
No 139
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.55 E-value=1.1e-14 Score=149.39 Aligned_cols=114 Identities=20% Similarity=0.179 Sum_probs=81.9
Q ss_pred CCCCCCCCCCCCCChhHHHHHhc-CCHHHHHHHHHcCCCccccC--CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCccC
Q 008477 21 SDFSSSVPLKKVPNGDVFEASRA-GDVDRLRYILESGVNVNARD--QWDSVALYYACLAGHLDAARMLLESGAICSEHTF 97 (564)
Q Consensus 21 ~d~~g~tpL~~~~~~~l~~Aa~~-g~~~~v~~Ll~~g~~~n~~d--~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~ 97 (564)
.+..+.||| |+|+.. |+.++++.|++.|+++|..+ ..|+||||+|+..|+.+++++|+++|++++..|.
T Consensus 195 ~~~~~~t~L--------~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~ 266 (368)
T 3jue_A 195 GSLHPGALL--------FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS 266 (368)
T ss_dssp --CCHHHHH--------HHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred ccCCCCcHH--------HHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCC
Confidence 334556677 777777 77777777777777777776 6777777777777777777777777777777777
Q ss_pred CCCc-hHHHHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 98 DGDR-CHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 98 ~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
.|.| +|+|+. +.+++++|+.+|++++..+ ..|.||||+|+..++.
T Consensus 267 ~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d--~~G~TpL~~A~~~g~~ 314 (368)
T 3jue_A 267 AGRGPLHHATILGHTGLACLFLKRGADLGARD--SEGRDPLTIAMETANA 314 (368)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHTTCH
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcC--CCCCCHHHHHHHCCCH
Confidence 7776 666666 6777777777777777655 6677777777776663
No 140
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.55 E-value=1.9e-14 Score=132.75 Aligned_cols=114 Identities=21% Similarity=0.186 Sum_probs=97.9
Q ss_pred hhhHHhhcCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccC-CCCCcHHHHHHHcCCHHHHHH
Q 008477 6 QSTIDAELDEIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARD-QWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 6 ~~~l~~~~~g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d-~~g~TpL~~A~~~g~~~~v~~ 84 (564)
...+...++|+++|.+|..|+||| |+|+..|+.+++++|+++|+++|.+| ..|+||||+|+..|+.+++++
T Consensus 57 ~~~v~~Ll~~~~~~~~d~~g~t~L--------~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~ 128 (183)
T 3deo_A 57 EQALSQLLEDRDVDAVDENGRTAL--------LFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128 (183)
T ss_dssp HHHHHHHTTTSCTTCCCTTSCCHH--------HHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCCCCCCHH--------HHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHH
Confidence 345666677999999999999999 99999999999999999999999998 899999999999999999999
Q ss_pred HHhCCCCCCCccCCCCc-hHHHHchHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 85 LLESGAICSEHTFDGDR-CHYAALNLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 85 Ll~~ga~~~~~d~~g~t-l~~aa~~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
|+++|++++.+|..|.| +|+|+..... ..+.++++.|+..++.
T Consensus 129 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~ 172 (183)
T 3deo_A 129 LVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLE 172 (183)
T ss_dssp HHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHH
T ss_pred HHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHH
Confidence 99999999999999998 6777541111 2346778888776664
No 141
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.54 E-value=2.8e-15 Score=138.98 Aligned_cols=108 Identities=12% Similarity=0.081 Sum_probs=94.6
Q ss_pred hHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCC------HHHHHHHHHcCCCccccCCCCC-cHHHHHHHcC--
Q 008477 8 TIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGD------VDRLRYILESGVNVNARDQWDS-VALYYACLAG-- 77 (564)
Q Consensus 8 ~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~------~~~v~~Ll~~g~~~n~~d~~g~-TpL~~A~~~g-- 77 (564)
++.-.++ |+++|.+|..|+||| |+|+..|+ .+++++|+++|+++|.+|..|+ ||||+|+..+
T Consensus 57 iv~~Ll~~Gadvn~~d~~g~TpL--------h~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~ 128 (186)
T 3t8k_A 57 ISMFLINKGADIKSRTKEGTTLF--------FPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVD 128 (186)
T ss_dssp HHHHHHHTTCCSSCCCTTCCCTH--------HHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSC
T ss_pred HHHHHHHCCCCCCCCCCCCCcHH--------HHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCC
Confidence 4555566 999999999999999 99999987 6889999999999999999999 9999999954
Q ss_pred ---CHHHHHHHHh-CCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCC
Q 008477 78 ---HLDAARMLLE-SGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPP 123 (564)
Q Consensus 78 ---~~~~v~~Ll~-~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~ 123 (564)
+.+++++|++ +|++++.+|..|.| +|+|+. +.+++++|.++..+.+
T Consensus 129 ~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~ 181 (186)
T 3t8k_A 129 ENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181 (186)
T ss_dssp HHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 4579999999 99999999999998 788887 8899999987654433
No 142
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.54 E-value=9.1e-15 Score=149.98 Aligned_cols=114 Identities=21% Similarity=0.219 Sum_probs=88.8
Q ss_pred CCCCC--CCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCc
Q 008477 18 LDASD--FSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEH 95 (564)
Q Consensus 18 v~~~d--~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~ 95 (564)
+|..+ ..|.||| |+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++..
T Consensus 226 vn~~~~~~~g~TpL--------h~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~ 297 (368)
T 3jue_A 226 VNWVNGGQDNATPL--------IQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGAR 297 (368)
T ss_dssp TTCCCTTTTCCCHH--------HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred CCccccccCCCCHH--------HHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCc
Confidence 45566 7899999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCC-ccccccccchhcc
Q 008477 96 TFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLG-PLQAALRDTFLGC 139 (564)
Q Consensus 96 d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~-~~~~g~t~lh~A~ 139 (564)
|..|.| +|+|+. +.+++++|+..+....... ....+.|+++++.
T Consensus 298 d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~ 345 (368)
T 3jue_A 298 DSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFR 345 (368)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHH
Confidence 999998 788887 8999999998875433211 1245667776544
No 143
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.54 E-value=2.5e-14 Score=138.52 Aligned_cols=114 Identities=19% Similarity=0.154 Sum_probs=100.5
Q ss_pred hhhHHhhcCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccC-CCCCcHHHHHHHcCCHHHHHH
Q 008477 6 QSTIDAELDEIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARD-QWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 6 ~~~l~~~~~g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d-~~g~TpL~~A~~~g~~~~v~~ 84 (564)
...+...++|+++|.+|..|+||| |+|+..|+.+++++|+++|+++|.+| ..|+||||+|+..|+.+++++
T Consensus 58 ~~~v~~Ll~~~~~~~~d~~g~t~L--------~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~ 129 (244)
T 3ui2_A 58 EQALSQLLEDRDVDAVDENGRTAL--------LFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 129 (244)
T ss_dssp HHHHHHTTTTCCTTCBCTTSCBHH--------HHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCCCCCCHH--------HHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 455666777999999999999999 99999999999999999999999998 889999999999999999999
Q ss_pred HHhCCCCCCCccCCCCc-hHHHHchHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 85 LLESGAICSEHTFDGDR-CHYAALNLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 85 Ll~~ga~~~~~d~~g~t-l~~aa~~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
|+++|++++..|..|.| +|+|+.. .. ...+.||+|+|+..++.
T Consensus 130 Ll~~ga~~~~~d~~g~t~l~~A~~~-------~~----------~~~~~~~l~~a~~~g~~ 173 (244)
T 3ui2_A 130 LVELGADIEVEDERGLTALELAREI-------LK----------TTPKGNPMQFGRRIGLE 173 (244)
T ss_dssp HHHTTCCTTCCCTTCCCHHHHHHHH-------HT----------TCCCSSHHHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCCcHHHHHHHH-------Hh----------ccCCCCHHHHHHHcChH
Confidence 99999999999999998 6777531 10 03478999999998884
No 144
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.53 E-value=2e-14 Score=154.11 Aligned_cols=108 Identities=18% Similarity=0.187 Sum_probs=101.3
Q ss_pred hhHHHHHhcCCHHHHHHHHHcCCCcccc------CCCCCcHHHHHHH---cCCHHHHHHHHhCCCCCCCccCCCCc-hHH
Q 008477 35 GDVFEASRAGDVDRLRYILESGVNVNAR------DQWDSVALYYACL---AGHLDAARMLLESGAICSEHTFDGDR-CHY 104 (564)
Q Consensus 35 ~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~------d~~g~TpL~~A~~---~g~~~~v~~Ll~~ga~~~~~d~~g~t-l~~ 104 (564)
..||.|+..|+.+.++.|++.|+++|.+ |..|+||||+|+. .|+.+++++|+++|+++|.+|..|.| +|+
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~ 213 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 213 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHH
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence 4579999999999999999999999987 8899999999976 89999999999999999999999998 899
Q ss_pred HHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 105 AAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 105 aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
|+. +.+++++|+++|++++..+ ..|.||||+|+..++.
T Consensus 214 A~~~g~~~~v~~Ll~~ga~~~~~d--~~g~tpl~~A~~~~~~ 253 (497)
T 3lvq_E 214 AALYNQPDCLKLLLKGRALVGTVN--EAGETALDIARKKHHK 253 (497)
T ss_dssp HTTTTCHHHHHHHHHTCCCCSCCC--TTCCCHHHHHHHTTCH
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcC--CCCCCHHHHHHHcCCH
Confidence 988 8999999999999999987 8999999999998885
No 145
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.52 E-value=1.8e-14 Score=121.25 Aligned_cols=90 Identities=29% Similarity=0.387 Sum_probs=80.0
Q ss_pred CCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCccC
Q 008477 18 LDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTF 97 (564)
Q Consensus 18 v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~ 97 (564)
....|.+|.||| |+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++..|.
T Consensus 17 ~~~~~~~g~t~L--------~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 88 (110)
T 2zgd_A 17 GSHMGSDLGKKL--------LEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK 88 (110)
T ss_dssp -----CCHHHHH--------HHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred ccccCCccchHH--------HHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccc
Confidence 445677888888 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCc-hHHHHc--hHHHHHHH
Q 008477 98 DGDR-CHYAAL--NLKVRKLL 115 (564)
Q Consensus 98 ~g~t-l~~aa~--~~~i~~lL 115 (564)
.|.| +|+|+. +.+++++|
T Consensus 89 ~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 89 FGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp TSCCHHHHHHHHTCHHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHh
Confidence 9998 788887 77888776
No 146
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.51 E-value=5.5e-14 Score=138.95 Aligned_cols=108 Identities=20% Similarity=0.193 Sum_probs=99.6
Q ss_pred hhHHHHHhcCCHHHHHHHHHcCCCcc------ccCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCCccCCCCc-hHH
Q 008477 35 GDVFEASRAGDVDRLRYILESGVNVN------ARDQWDSVALYYACLA---GHLDAARMLLESGAICSEHTFDGDR-CHY 104 (564)
Q Consensus 35 ~~l~~Aa~~g~~~~v~~Ll~~g~~~n------~~d~~g~TpL~~A~~~---g~~~~v~~Ll~~ga~~~~~d~~g~t-l~~ 104 (564)
.+|+.|+..|+.+.++.+++.|++++ ..|..|+||||+|+.. |+.+++++|+++|++++.+|..|.| +|+
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~ 211 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY 211 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHH
Confidence 45699999999999999999999954 4588999999999999 8999999999999999999999998 899
Q ss_pred HHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 105 AAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 105 aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
|+. +.+++++|+++|++++..+ ..|.||||+|+..++.
T Consensus 212 A~~~g~~~~v~~Ll~~gad~~~~d--~~g~tpL~~A~~~~~~ 251 (278)
T 1dcq_A 212 CCLTDNAECLKLLLRGKASIEIAN--ESGETPLDIAKRLKHE 251 (278)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHTTCH
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcc--CCCCCHHHHHHHcCCH
Confidence 988 8999999999999999977 8899999999998884
No 147
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.50 E-value=9.2e-14 Score=141.03 Aligned_cols=129 Identities=18% Similarity=0.202 Sum_probs=83.7
Q ss_pred hHHhhcC-CCCCCCCCC-CCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 008477 8 TIDAELD-EIDLDASDF-SSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML 85 (564)
Q Consensus 8 ~l~~~~~-g~~v~~~d~-~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~L 85 (564)
.+...++ |+++|.++. .|+||| |+|+..|+.+++++|+++|++++.++..+.+|++.++..+...++..+
T Consensus 40 ~V~~LL~~Gadvn~~~~~~g~TpL--------h~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (337)
T 4g8k_A 40 LVQQLLEGGANVNFQEEEGGWTPL--------HNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLF 111 (337)
T ss_dssp HHHHHHHHTCCTTCCCTTTCCCHH--------HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHCCCCCCccCCCCCcCHH--------HHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHh
Confidence 3444444 666665543 356666 666666666666666666666666666666666666666666666666
Q ss_pred HhCCCCCCCccCCCCc-hHHHHc--hHHHHHHHHhccCCCCCCCc--------cccccccchhccccccc
Q 008477 86 LESGAICSEHTFDGDR-CHYAAL--NLKVRKLLKAYEARPPPLGP--------LQAALRDTFLGCGANRQ 144 (564)
Q Consensus 86 l~~ga~~~~~d~~g~t-l~~aa~--~~~i~~lLl~~~~~~~~~~~--------~~~g~t~lh~A~~~~~~ 144 (564)
+..+++++..|..|.| +|+|+. +.+++++|+.+|++++.... ...|.||||.|+..++.
T Consensus 112 ~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~ 181 (337)
T 4g8k_A 112 LSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 181 (337)
T ss_dssp HTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCH
T ss_pred hhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCH
Confidence 6666666777777777 677776 77888888888877654321 13477888888887774
No 148
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.50 E-value=4.6e-14 Score=141.16 Aligned_cols=108 Identities=18% Similarity=0.189 Sum_probs=100.6
Q ss_pred hhHHHHHhcCCHHHHHHHHHcCCCccc------cCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCCccCCCCc-hHH
Q 008477 35 GDVFEASRAGDVDRLRYILESGVNVNA------RDQWDSVALYYACLA---GHLDAARMLLESGAICSEHTFDGDR-CHY 104 (564)
Q Consensus 35 ~~l~~Aa~~g~~~~v~~Ll~~g~~~n~------~d~~g~TpL~~A~~~---g~~~~v~~Ll~~ga~~~~~d~~g~t-l~~ 104 (564)
.+|+.|+..|+.+.++.|++.|++++. .+..|+||||+|+.. |+.+++++|+++|++++..|..|.| +|+
T Consensus 153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~ 232 (301)
T 2b0o_E 153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 232 (301)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHH
T ss_pred HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 446999999999999999999999998 689999999999997 8999999999999999999999998 888
Q ss_pred HHc--hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 105 AAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 105 aa~--~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
|+. +.+++++|+++|++++..+ ..|.||||+|+..++.
T Consensus 233 A~~~g~~~~v~~Ll~~gad~~~~d--~~G~TpL~~A~~~~~~ 272 (301)
T 2b0o_E 233 AALYNQPDCLKLLLKGRALVGTVN--EAGETALDIARKKHHK 272 (301)
T ss_dssp HHHTTCHHHHHHHHHTTCCCSCCC--TTSCCHHHHHHHHTCH
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcC--CCCCCHHHHHHHcCCH
Confidence 888 8999999999999999877 8899999999998874
No 149
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.49 E-value=7.3e-14 Score=113.51 Aligned_cols=78 Identities=33% Similarity=0.562 Sum_probs=72.6
Q ss_pred hhhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 008477 6 QSTIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 6 ~~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
...+...++ |+++|.+|..|+||| |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus 15 ~~~v~~Ll~~g~~~n~~d~~g~t~L--------~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~ 86 (93)
T 1n0q_A 15 LEVVKLLLEAGADVNAKDKNGRTPL--------HLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86 (93)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHH--------HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCCCcccCCCCCCHH--------HHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHH
Confidence 345555665 999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCCC
Q 008477 85 LLESGAI 91 (564)
Q Consensus 85 Ll~~ga~ 91 (564)
|+++||+
T Consensus 87 Ll~~ga~ 93 (93)
T 1n0q_A 87 LLEAGAY 93 (93)
T ss_dssp HHHTTCC
T ss_pred HHHcCCC
Confidence 9999985
No 150
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.46 E-value=8.3e-14 Score=117.88 Aligned_cols=89 Identities=21% Similarity=0.340 Sum_probs=81.9
Q ss_pred hhhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 008477 6 QSTIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARM 84 (564)
Q Consensus 6 ~~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~ 84 (564)
...+...++ |++++.+|..|.||| |+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++
T Consensus 22 ~~~~~~Ll~~g~~~~~~d~~g~t~L--------~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~ 93 (115)
T 2l6b_A 22 AEEVKKLLSKGADVNARSKDGNTPL--------HLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKL 93 (115)
T ss_dssp HHHHHHHTTTTCCSSCCCSSSCCTT--------HHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHH--------HHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHH
Confidence 345666676 999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCccCCCCch
Q 008477 85 LLESGAICSEHTFDGDRC 102 (564)
Q Consensus 85 Ll~~ga~~~~~d~~g~tl 102 (564)
|+++|++++..+..|.++
T Consensus 94 Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 94 LDAKGADVNARSWGSSHH 111 (115)
T ss_dssp HHTTSSSHHHHSCCCC--
T ss_pred HHHcCCCCCcCCcccccc
Confidence 999999999999988764
No 151
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.37 E-value=2.2e-13 Score=137.83 Aligned_cols=128 Identities=12% Similarity=-0.058 Sum_probs=99.5
Q ss_pred hhcC-CCCCCCCCCCCCCCCCC--------------CCChhH-----------------------HHHHhcCCHHHHHHH
Q 008477 11 AELD-EIDLDASDFSSSVPLKK--------------VPNGDV-----------------------FEASRAGDVDRLRYI 52 (564)
Q Consensus 11 ~~~~-g~~v~~~d~~g~tpL~~--------------~~~~~l-----------------------~~Aa~~g~~~~v~~L 52 (564)
..++ |++++.+|..|.|+++. .....+ |.|+..+..++++.|
T Consensus 37 ~ll~~ga~i~~~~~~g~~~~~g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l 116 (327)
T 1sw6_A 37 DFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAF 116 (327)
T ss_dssp STTTSSCCCEECBCCCCCCCHHHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHC
T ss_pred HHhhCCcccccCCCCCCcccCchhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHH
Confidence 3445 88999999999998741 011112 444555556777788
Q ss_pred HHcCCCccc-cCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCccCCCCc-hHHHHc--h---HHHHHHHHhcc-CCCCC
Q 008477 53 LESGVNVNA-RDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAAL--N---LKVRKLLKAYE-ARPPP 124 (564)
Q Consensus 53 l~~g~~~n~-~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t-l~~aa~--~---~~i~~lLl~~~-~~~~~ 124 (564)
++.|+++|. +|..|+||||+|+..|+.+++++|+++|++++.+|..|.| +|+|+. + .+++..|++++ .+++.
T Consensus 117 ~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~ 196 (327)
T 1sw6_A 117 PNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL 196 (327)
T ss_dssp TTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGE
T ss_pred HhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccC
Confidence 888899999 8999999999999999999999999999999999999998 788888 3 36667777765 55666
Q ss_pred CCccccccccchhccc
Q 008477 125 LGPLQAALRDTFLGCG 140 (564)
Q Consensus 125 ~~~~~~g~t~lh~A~~ 140 (564)
.+ ..|.||||+|+.
T Consensus 197 ~d--~~g~tpLh~A~~ 210 (327)
T 1sw6_A 197 ED--SMNRTILHHIII 210 (327)
T ss_dssp EC--TTCCCHHHHHHH
T ss_pred CC--CCCCCHHHHHHH
Confidence 55 789999999997
No 152
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.33 E-value=4.6e-12 Score=113.57 Aligned_cols=135 Identities=13% Similarity=0.116 Sum_probs=92.1
Q ss_pred EEEEe-CCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHhHhhccCCCCCCCCccc
Q 008477 345 VCVRV-DKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQV 423 (564)
Q Consensus 345 v~~~~-~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~l~~~~~ 423 (564)
|+++. +|+.|.+||.+ ++.|+||++||.+. ++.+ ++....|.+++|+..+++.|++|+|++.-...+...
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~-~~~~------e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~- 73 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDL-GMDD------EGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPED- 73 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSS-CSS------------CEECTTSCHHHHHHHHHHHHHTTTCCC-----
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhc-CCcc------cccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCccc-
Confidence 66765 89999999999 89999999999851 2320 233468999999999999999999999841111100
Q ss_pred ccCccchhhhcCCCCCC-----CCCchHHHHHHHHHhcccChhhHHHHHHHHHHhhccccChHHHHHHHHHHHh
Q 008477 424 CCNSVTWLVALGSNLPN-----FVPFDEQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDM 492 (564)
Q Consensus 424 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~~~~n~~~~l~~A~~ 492 (564)
++.. -......+. ...+.+++++|+.+|+++++.+|.++|++++...|...+++.+..++.+..-
T Consensus 74 --~~~~--~~~~~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~I~~d 143 (159)
T 2ast_A 74 --DENK--EKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKND 143 (159)
T ss_dssp -----------CCCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTTCCCC
T ss_pred --cccc--ccchhhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCC
Confidence 0000 000000000 1234669999999999999999999999999999976677766666655433
No 153
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.27 E-value=2.4e-13 Score=139.89 Aligned_cols=104 Identities=16% Similarity=0.048 Sum_probs=47.1
Q ss_pred HHHHhcCCHHHHHHHHHcCCCc---cccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC---CCccCCCCchHHHHc--hH
Q 008477 38 FEASRAGDVDRLRYILESGVNV---NARDQWDSVALYYACLAGHLDAARMLLESGAIC---SEHTFDGDRCHYAAL--NL 109 (564)
Q Consensus 38 ~~Aa~~g~~~~v~~Ll~~g~~~---n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~---~~~d~~g~tl~~aa~--~~ 109 (564)
|+|+..|+.+++++|++.|+.. +..+..|.||||+|+..|+.+++++|+++|+++ +..+.+..++|+||. +.
T Consensus 97 h~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~~TpLh~Aa~~G~~ 176 (376)
T 2aja_A 97 FVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHL 176 (376)
T ss_dssp HHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCCCCHHHHHHHCCCH
Confidence 5555555555555555555421 122234455555555555555555555555431 111111112455554 45
Q ss_pred HHHHHHHhccCCCCC--CCccccccccchhcc-cccc
Q 008477 110 KVRKLLKAYEARPPP--LGPLQAALRDTFLGC-GANR 143 (564)
Q Consensus 110 ~i~~lLl~~~~~~~~--~~~~~~g~t~lh~A~-~~~~ 143 (564)
+++++|+++|+++.. .+ ..|.||||.|+ ..++
T Consensus 177 eiv~~Ll~~ga~~~~~~~d--~~g~TpL~~Aa~~~G~ 211 (376)
T 2aja_A 177 HVLNRLCELAPTEATAMIQ--AENYYAFRWAAVGRGH 211 (376)
T ss_dssp HHHHHHHHSCGGGHHHHHH--HHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHcCCccchhccC--CCCCCHHHHHHHHCCC
Confidence 555555555544332 22 34555555555 5444
No 154
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.23 E-value=3.5e-13 Score=138.65 Aligned_cols=99 Identities=15% Similarity=0.046 Sum_probs=86.2
Q ss_pred hHHHHHhcCCHHHHHHHHHcCCCc---cccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC--ccCCCCc-hHHHH-c-
Q 008477 36 DVFEASRAGDVDRLRYILESGVNV---NARDQWDSVALYYACLAGHLDAARMLLESGAICSE--HTFDGDR-CHYAA-L- 107 (564)
Q Consensus 36 ~l~~Aa~~g~~~~v~~Ll~~g~~~---n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~--~d~~g~t-l~~aa-~- 107 (564)
+||+||..|+.+++++|+++|+++ +..+.+ +||||+|+..|+.+++++|+++|++++. .|..|.| +|+|+ .
T Consensus 131 pL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~ 209 (376)
T 2aja_A 131 AFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR 209 (376)
T ss_dssp HHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHC
Confidence 449999999999999999999862 333333 9999999999999999999999999887 8888887 89999 7
Q ss_pred -hHHHHHHHHhccCCCCCCCccccccccchhccccccc
Q 008477 108 -NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQ 144 (564)
Q Consensus 108 -~~~i~~lLl~~~~~~~~~~~~~~g~t~lh~A~~~~~~ 144 (564)
+.+++++|++.|. .|.||+|.|+..++.
T Consensus 210 G~~eiv~~Ll~~ga---------~~~taL~~Aa~~g~~ 238 (376)
T 2aja_A 210 GHHNVINFLLDCPV---------MLAYAEIHEFEYGEK 238 (376)
T ss_dssp CCHHHHHHHTTSHH---------HHHHHHHCTTTTTTT
T ss_pred CCHHHHHHHHhCCC---------ccchHHHHHHHCCCH
Confidence 8999999998663 389999999999884
No 155
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.17 E-value=5.2e-11 Score=99.82 Aligned_cols=71 Identities=28% Similarity=0.454 Sum_probs=65.8
Q ss_pred hhHHhhcC-CCCCCCCCCCCCCCCCCCCChhHHHHHhcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 008477 7 STIDAELD-EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML 85 (564)
Q Consensus 7 ~~l~~~~~-g~~v~~~d~~g~tpL~~~~~~~l~~Aa~~g~~~~v~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~L 85 (564)
..+...++ |+++|.+|..|.||| |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus 38 ~~v~~Ll~~g~~i~~~d~~g~tpL--------h~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 38 DEVRILMANGADVAAKDKNGSTPL--------HLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHH--------HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHcCCCCCccCCCCCCHH--------HHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence 44555555 999999999999999 999999999999999999999999999999999999999999999876
No 156
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.05 E-value=4e-10 Score=91.91 Aligned_cols=85 Identities=22% Similarity=0.139 Sum_probs=62.4
Q ss_pred EEEEe-CCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHhHhhc-----c---CCC
Q 008477 345 VCVRV-DKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMY-----T---DGL 415 (564)
Q Consensus 345 v~~~~-~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iY-----t---~~~ 415 (564)
|+++. ||..|.+||.+ ++.|+||++||.+..++.|+ ....|.+++|++.+++.+++|+| + +.+
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~-------~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i 75 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAEN-------ETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEI 75 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC---------------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCC
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCcccc-------CCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCC
Confidence 45554 79999999999 99999999999853344443 34789999999999999999999 5 444
Q ss_pred CCCCCcccccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccCh
Q 008477 416 KDIDPDQVCCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLL 460 (564)
Q Consensus 416 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l 460 (564)
++.. .+.+++++|+.+|++++.
T Consensus 76 ~~~~-----------------------i~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 76 PEFP-----------------------IAPEIALELLMAANFLDC 97 (97)
T ss_dssp CCCC-----------------------CCGGGHHHHHHHHHHHTC
T ss_pred CcCc-----------------------CCHHHHHHHHHHHhhhCC
Confidence 2111 123499999999999863
No 157
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=98.98 E-value=1.4e-09 Score=95.18 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=87.2
Q ss_pred EEEEe-CCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHhHhhccCCCCCCCCccc
Q 008477 345 VCVRV-DKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQV 423 (564)
Q Consensus 345 v~~~~-~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~l~~~~~ 423 (564)
|++.. +|+.|.+|+.+ +..|.+|++||... + ...|.+++|+..+++.+++|+|...-........
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~--------~-----~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~ 69 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDL--------G-----MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDD 69 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHT--------C-----CSSEECTTCCHHHHHHHHHHHHHHTTCC------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhc--------C-----CCceecCCcCHHHHHHHHHHHHHhccCCCccccc
Confidence 66666 88999999998 79999999999751 1 2479999999999999999999987411111000
Q ss_pred ccCccchhhhcCCCCCC-----CCCchHHHHHHHHHhcccChhhHHHHHHHHHHhhccccChHHHHHHHH
Q 008477 424 CCNSVTWLVALGSNLPN-----FVPFDEQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLI 488 (564)
Q Consensus 424 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~~~~n~~~~l~ 488 (564)
.... ......+. ...+.+++++|+.+|+++++.+|.++|++++...|...+++....++.
T Consensus 70 ~~~~-----~~~~~i~~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeiR~~f~ 134 (141)
T 1fs1_B 70 ENKE-----KRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN 134 (141)
T ss_dssp ----------------HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHTC
T ss_pred cccc-----cchhhhhHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 0000 00000000 123466999999999999999999999999999996556555444443
No 158
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.85 E-value=8.2e-10 Score=98.79 Aligned_cols=131 Identities=13% Similarity=0.108 Sum_probs=63.3
Q ss_pred EEEEe-CCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHhHhhccCCCCCCCCccc
Q 008477 345 VCVRV-DKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQV 423 (564)
Q Consensus 345 v~~~~-~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~l~~~~~ 423 (564)
|++.. +|..|.+|+.+ +..|++|++||.. . . ....|.+++|+..+++.|++|+|...-.....+.
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~--~-------~---~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~- 71 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVED--D-------C---VDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAE- 71 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC------------------------CCTTSCHHHHHHHHHC--------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHc--c-------C---CCCceeCCcCcHHHHHHHHHHHHHcccCCCcccc-
Confidence 55654 79999999998 7899999999975 1 1 1247999999999999999999998741110000
Q ss_pred ccCccchhhhcCCCCCCC-----CCchHHHHHHHHHhcccChhhHHHHHHHHHHhhccccChHHHHHHHHHHHh
Q 008477 424 CCNSVTWLVALGSNLPNF-----VPFDEQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDM 492 (564)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~~~~n~~~~l~~A~~ 492 (564)
.... .-......+.. ..+.+++++|+.+|+++++.+|.++|++++...|...+++.+..++.++.-
T Consensus 72 --~~~~-~~~~~~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd 142 (160)
T 2p1m_A 72 --AVEG-AATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKND 142 (160)
T ss_dssp --------------------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCC
T ss_pred --cccc-cccccchhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCC
Confidence 0000 00000000000 123458999999999999999999999999999966677777666655443
No 159
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=98.83 E-value=6.1e-09 Score=84.81 Aligned_cols=78 Identities=12% Similarity=0.126 Sum_probs=63.7
Q ss_pred eEEEe-cCeeechhhHhhcccChhHHHhccc--cccccccceEEcCCCCHHHHHHHhhhHc-----c---CCcc---CCc
Q 008477 173 VVFYV-QGRPIEAHRVILSARSVFFRRKFET--DWRYRNEIRFSREKLSYPALYGLIHFFY-----S---DRLE---IAV 238 (564)
Q Consensus 173 v~~~v-~~~~~~~Hk~iL~a~S~~f~~l~~~--~~~e~~~~~i~l~~v~~~~~~~lL~ylY-----t---g~~~---i~~ 238 (564)
|+++. +|+.|.+||.+ ++.|++|+.||.+ .+.|.....|+++++++.+++.+++|+| + ++++ ++.
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~ 82 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 82 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCG
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCH
Confidence 55665 78999999999 9999999999986 6677778899999999999999999999 5 6676 899
Q ss_pred ccHHHHHHHHhHh
Q 008477 239 DDMEDLVKICKVC 251 (564)
Q Consensus 239 ~~~~~ll~~a~~c 251 (564)
+++.+|+.+|++.
T Consensus 83 ~~l~eLl~AAnyL 95 (97)
T 4ajy_C 83 EIALELLMAANFL 95 (97)
T ss_dssp GGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 9999999999765
No 160
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=98.69 E-value=3.1e-08 Score=88.56 Aligned_cols=60 Identities=13% Similarity=0.169 Sum_probs=50.1
Q ss_pred eEEEe-cCeeechhhHhhcccChhHHHhccc-ccc-ccccceEEcCCCCHHHHHHHhhhHccCC
Q 008477 173 VVFYV-QGRPIEAHRVILSARSVFFRRKFET-DWR-YRNEIRFSREKLSYPALYGLIHFFYSDR 233 (564)
Q Consensus 173 v~~~v-~~~~~~~Hk~iL~a~S~~f~~l~~~-~~~-e~~~~~i~l~~v~~~~~~~lL~ylYtg~ 233 (564)
|+++. +|+.|.+|+.+ ++.|++|+.||.+ ++. ++....|+++++++.+++.+++|+|++.
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~ 65 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHK 65 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcC
Confidence 67765 79999999999 8999999999987 666 5666789999999999999999999977
No 161
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.33 E-value=2.9e-06 Score=76.22 Aligned_cols=134 Identities=17% Similarity=0.153 Sum_probs=88.1
Q ss_pred cEEEEe-CCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHhHhhccCCCCCCCCcc
Q 008477 344 DVCVRV-DKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQ 422 (564)
Q Consensus 344 Dv~~~~-~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~l~~~~ 422 (564)
-|+++. +|..|.+++.+ +..|.+++.|+... + .+ +..++....|.|++|+..+++.|++|+|...-...+...
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~-~-~~---~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~ 81 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDM-G-DD---DDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDED 81 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC----------------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC--
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhc-C-cc---cccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCcccc
Confidence 466665 88999999998 68899999999741 1 00 000122368999999999999999999987652111100
Q ss_pred cccCccchhhhcCCCCCC-----CCCchHHHHHHHHHhcccChhhHHHHHHHHHHhhccccChHHHHHHHHH
Q 008477 423 VCCNSVTWLVALGSNLPN-----FVPFDEQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLIL 489 (564)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~~~~n~~~~l~~ 489 (564)
..+. ......+. ...+.+.+++|+.+|+++++.+|.++|++.+...|...+++....++.+
T Consensus 82 --~~~~----~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I 147 (169)
T 3v7d_A 82 --DDDS----RKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNI 147 (169)
T ss_dssp ------------CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTC
T ss_pred --cccc----cccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCC
Confidence 0000 00000010 1134579999999999999999999999999988865566655555543
No 162
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.25 E-value=1.4e-06 Score=70.37 Aligned_cols=93 Identities=22% Similarity=0.125 Sum_probs=63.4
Q ss_pred EEEEe-CCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHhHhhccCCCCCCCCccc
Q 008477 345 VCVRV-DKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQV 423 (564)
Q Consensus 345 v~~~~-~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~l~~~~~ 423 (564)
|+++. +|..|.+++.+ +..|.++++|+.....+.|+ ....|.+++|+..+++.+++|+|...-.....+
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~-------~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~-- 72 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAEN-------ETNEVNFREIPSHVLSKVCMYFTYKVRYTNSST-- 72 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC---------------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCS--
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccc-------cCCceeCCCCCHHHHHHHHHHHHHccccCCCcc--
Confidence 45555 89999999997 79999999999752122332 336899999999999999999998652000000
Q ss_pred ccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccCh
Q 008477 424 CCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLL 460 (564)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l 460 (564)
..+....+.+.+++|+.+|+++++
T Consensus 73 -------------~i~~w~vd~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 73 -------------EIPEFPIAPEIALELLMAANFLDC 96 (96)
T ss_dssp -------------CCCCCCCCTTTHHHHHHHHHHHTC
T ss_pred -------------cCCCcccCHHHHHHHHHHHHHhCc
Confidence 011112234599999999999875
No 163
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.17 E-value=3.3e-06 Score=68.62 Aligned_cols=93 Identities=22% Similarity=0.209 Sum_probs=67.0
Q ss_pred EEEEe-CCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHhHhhccCCCCCCCCccc
Q 008477 345 VCVRV-DKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQV 423 (564)
Q Consensus 345 v~~~~-~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~l~~~~~ 423 (564)
|+++. +|..|.+++.+ +..|.++++|+.. ++ | +....|.+++|+..+++.+++|+|...-...+..
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~--~~-e-------~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~-- 72 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEG--PF-R-------ESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSE-- 72 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHS--ST-T-------TCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCS--
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhc--cc-c-------cCCCceecCCcCHHHHHHHHHHHHHhcccCCCcc--
Confidence 66665 89999999997 7999999999986 33 2 2235899999999999999999998652000000
Q ss_pred ccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccCh
Q 008477 424 CCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLL 460 (564)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l 460 (564)
.....+....+.+.+++|+.+|+++++
T Consensus 73 ----------~~~~i~~w~vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 73 ----------DDDEIPEFEIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp ----------SCSSCCCCCCCHHHHHHHHHHHHHHCC
T ss_pred ----------ccccCCCccCCHHHHHHHHHHHHHhCc
Confidence 001111223456799999999999875
No 164
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=98.17 E-value=1.3e-05 Score=66.11 Aligned_cols=99 Identities=18% Similarity=0.176 Sum_probs=76.2
Q ss_pred cEEEEeCCeEEecchhhhhccc-HHHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHhHhhccCCCCCCCCcc
Q 008477 344 DVCVRVDKKIFRCHQVVLASRS-EYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQ 422 (564)
Q Consensus 344 Dv~~~~~~~~~~~Hk~iL~arS-~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~l~~~~ 422 (564)
-|++.|+|+.|...+..|+... .+|.+||.+...+... .+....+-+ |-++..|+.||+|+.+|.+ .++.+-
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~-----~d~~~~~fi-DRdp~~F~~IL~~lr~g~l-~~p~~~ 79 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSD-----KDETGAYLI-DRDPTYFGPVLNYLRHGKL-VINKDL 79 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGG-----BCTTSCEEE-CSCHHHHHHHHHHHHHSCC-CCCTTS
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcC-----CCCCceEEe-cCChHHHHHHHHHhCCCee-CCCCCC
Confidence 4678899999999999998765 4789999762222211 112346666 7899999999999999998 455541
Q ss_pred cccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccChhhHHHHHHHHHHh
Q 008477 423 VCCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLLFPLKRAVADVLLL 473 (564)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l~~L~~~c~~~l~~ 473 (564)
....+++-|++|+|+.|+..|++.|.+
T Consensus 80 ------------------------~~~~l~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 80 ------------------------AEEGVLEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp ------------------------CHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------------------------CHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 347889999999999999999988754
No 165
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=97.97 E-value=1.3e-05 Score=69.65 Aligned_cols=112 Identities=13% Similarity=0.022 Sum_probs=74.4
Q ss_pred eEEEe-cCeeechhhHhhcccChhHHHhccccccccccceEEcCCCCHHHHHHHhhhHccCCccC-Cccc-H---HHHHH
Q 008477 173 VVFYV-QGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEI-AVDD-M---EDLVK 246 (564)
Q Consensus 173 v~~~v-~~~~~~~Hk~iL~a~S~~f~~l~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i-~~~~-~---~~ll~ 246 (564)
|+++. +|+.|.+|+.+ +..|++++.|+.+.- ...|++++|+..+++.+++|+|...-.- .... . ..--.
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~----~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~ 78 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG----MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDD 78 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC----CSSEECTTCCHHHHHHHHHHHHHHTTCC---------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC----CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhh
Confidence 66776 88999999998 899999999997531 4479999999999999999999865221 1100 0 00000
Q ss_pred HHhHhcHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcC
Q 008477 247 ICKVCKCESLQRIIEKELIHQKYAEYKALRDVDNSQKRFILQGS 290 (564)
Q Consensus 247 ~a~~c~~~~L~~~l~~~l~~~~~a~~~~~~~L~~~~~~~i~~~~ 290 (564)
+.+. ..+|+.-.-+..+++...|...+...|...|.+++....
T Consensus 79 i~~w-D~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~i 121 (141)
T 1fs1_B 79 IPVW-DQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMI 121 (141)
T ss_dssp --HH-HHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hhHH-HHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 0011 122332112256777778888888888888888886543
No 166
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=97.71 E-value=4.4e-05 Score=63.30 Aligned_cols=94 Identities=21% Similarity=0.114 Sum_probs=64.4
Q ss_pred cEEEEe-CCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHhHhhccCCCCCCCCcc
Q 008477 344 DVCVRV-DKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQ 422 (564)
Q Consensus 344 Dv~~~~-~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~l~~~~ 422 (564)
-|+++. +|..|.+++.+ +..|..++.|+.....+.|. ....|.|++|+..+++.+++|+|...-..-...
T Consensus 18 ~v~L~SsDG~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~-------~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~- 88 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAEN-------ETNEVNFREIPSHVLSKVCMYFTYKVRYTNSST- 88 (112)
T ss_dssp EEEEECTTSCEEEEEHHH-HHTSHHHHHHSSCC---------------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSS-
T ss_pred EEEEEcCCCCEEEECHHH-HHHhHHHHHHHHhcCCcccc-------cCCceeCCCCCHHHHHHHHHHHHHhhhccCCcC-
Confidence 356663 89999999995 68999999999752223332 235899999999999999999987652000000
Q ss_pred cccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccCh
Q 008477 423 VCCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLL 460 (564)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l 460 (564)
..+.+..+.+.+++|+.+|+++++
T Consensus 89 --------------~i~~w~vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 89 --------------EIPEFPIAPEIALELLMAANFLDC 112 (112)
T ss_dssp --------------CCCCCCCCHHHHHHHHHHHHHHTC
T ss_pred --------------CCCCcccCHHHHHHHHHHHHHhCc
Confidence 111223456799999999999875
No 167
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=97.60 E-value=1.9e-05 Score=70.32 Aligned_cols=114 Identities=10% Similarity=0.051 Sum_probs=49.4
Q ss_pred CeEEEe-cCeeechhhHhhcccChhHHHhccccccccccceEEcCCCCHHHHHHHhhhHccCCccCC-cccH-----HHH
Q 008477 172 DVVFYV-QGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIA-VDDM-----EDL 244 (564)
Q Consensus 172 Dv~~~v-~~~~~~~Hk~iL~a~S~~f~~l~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~-~~~~-----~~l 244 (564)
-|+++. +|..|.+|+.+ +..|++|+.||.+.. ....|++++|+..+++.+++|+|+..-.-. .+.- ..-
T Consensus 5 ~v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~ 80 (160)
T 2p1m_A 5 KIVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC---VDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSD 80 (160)
T ss_dssp ---CCC---------CHH-HHTCTTTC---------------CCTTSCHHHHHHHHHC----------------------
T ss_pred EEEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC---CCCceeCCcCcHHHHHHHHHHHHHcccCCCccccccccccccc
Confidence 366665 79999999998 889999999997642 234799999999999999999998763210 0000 000
Q ss_pred HHHHhHhcHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcC
Q 008477 245 VKICKVCKCESLQRIIEKELIHQKYAEYKALRDVDNSQKRFILQGS 290 (564)
Q Consensus 245 l~~a~~c~~~~L~~~l~~~l~~~~~a~~~~~~~L~~~~~~~i~~~~ 290 (564)
-.+.+ ...+|+.-.-+..+.++..|...+...|...|.+++....
T Consensus 81 ~~i~~-wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~i 125 (160)
T 2p1m_A 81 DDLKA-WDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMI 125 (160)
T ss_dssp ---------------------CHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred chhhH-HHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 00001 1133343222356778888899999999999999987654
No 168
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=97.54 E-value=0.00014 Score=58.97 Aligned_cols=78 Identities=13% Similarity=0.126 Sum_probs=62.3
Q ss_pred CeEEEe-cCeeechhhHhhcccChhHHHhccccccccccceEEcCCCCHHHHHHHhhhHccCC--------------ccC
Q 008477 172 DVVFYV-QGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDR--------------LEI 236 (564)
Q Consensus 172 Dv~~~v-~~~~~~~Hk~iL~a~S~~f~~l~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~--------------~~i 236 (564)
-|+++. +|..|.+++.+ +..|.+++.|+..++ +.....|++++++..+++.+++|+|.-. ..+
T Consensus 5 ~v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~v 82 (99)
T 1hv2_A 5 FVTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEI 82 (99)
T ss_dssp EEEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCC
T ss_pred EEEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCccC
Confidence 367776 89999999997 899999999998755 4445689999999999999999998632 245
Q ss_pred CcccHHHHHHHHhHh
Q 008477 237 AVDDMEDLVKICKVC 251 (564)
Q Consensus 237 ~~~~~~~ll~~a~~c 251 (564)
+.+.+-+|+.+|++.
T Consensus 83 d~~~lfeLi~AAnyL 97 (99)
T 1hv2_A 83 PTEMSLELLLAADYL 97 (99)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 666777777777554
No 169
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=97.52 E-value=0.00013 Score=58.81 Aligned_cols=78 Identities=12% Similarity=0.100 Sum_probs=59.9
Q ss_pred eEEEe-cCeeechhhHhhcccChhHHHhccc--cccccccceEEcCCCCHHHHHHHhhhHccCC-----------ccCCc
Q 008477 173 VVFYV-QGRPIEAHRVILSARSVFFRRKFET--DWRYRNEIRFSREKLSYPALYGLIHFFYSDR-----------LEIAV 238 (564)
Q Consensus 173 v~~~v-~~~~~~~Hk~iL~a~S~~f~~l~~~--~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~-----------~~i~~ 238 (564)
|+++. +|..|.+++.+ +..|.+++.|+.. .+.|.....|++++++..+++.+++|+|.-. ..++.
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd~ 81 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 81 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCCT
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccCH
Confidence 55665 88999999997 8999999999974 2345556789999999999999999998632 35677
Q ss_pred ccHHHHHHHHhHh
Q 008477 239 DDMEDLVKICKVC 251 (564)
Q Consensus 239 ~~~~~ll~~a~~c 251 (564)
+.+-+|+.+|++.
T Consensus 82 ~~l~eLi~AAnyL 94 (96)
T 2fnj_C 82 EIALELLMAANFL 94 (96)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7888888888654
No 170
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=97.12 E-value=0.0016 Score=59.20 Aligned_cols=100 Identities=18% Similarity=0.176 Sum_probs=74.7
Q ss_pred cEEEEeCCeEEecchhhhhccc-HHHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHhHhhccCCCCCCCCcc
Q 008477 344 DVCVRVDKKIFRCHQVVLASRS-EYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQ 422 (564)
Q Consensus 344 Dv~~~~~~~~~~~Hk~iL~arS-~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~l~~~~ 422 (564)
-|+|-|+|+.|...+..|...- .+|..||.+...+... .+....+.| |-++..|+.||+|+.+|.+ .++.+-
T Consensus 13 ~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~-----~De~geyFI-DRDP~~F~~ILnyLRtG~L-~lP~~~ 85 (202)
T 3drx_A 13 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSD-----KDETGAYLI-DRDPTYFGPVLNYLRHGKL-VINKDL 85 (202)
T ss_dssp EEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC---------BCTTCCEEE-CSCSTTHHHHHHHHHHSCC-CCCTTS
T ss_pred EEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcc-----cCCCccEEe-cCChHHHHHHHHHhcCCcc-CCCCCC
Confidence 3567899999999999997543 3788898752122111 112346666 6789999999999999999 465541
Q ss_pred cccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccChhhHHHHHHHHHHhh
Q 008477 423 VCCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLLFPLKRAVADVLLLH 474 (564)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l~~L~~~c~~~l~~~ 474 (564)
....++.-|++|+|+.|.+.|++.|.+.
T Consensus 86 ------------------------~~~~l~eEA~FygL~~Lv~~l~~~i~er 113 (202)
T 3drx_A 86 ------------------------AEEGVLEEAEFYNITSLIKLVKDKIRER 113 (202)
T ss_dssp ------------------------CHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------------------CHHHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 3467999999999999999999988654
No 171
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=97.00 E-value=0.0035 Score=51.36 Aligned_cols=67 Identities=16% Similarity=0.118 Sum_probs=51.7
Q ss_pred CeEEEecCeeechhhHhhcccC-hhHHHhcccccc----ccccceEEcCCCCHHHHHHHhhhHccCCccCCcc
Q 008477 172 DVVFYVQGRPIEAHRVILSARS-VFFRRKFETDWR----YRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVD 239 (564)
Q Consensus 172 Dv~~~v~~~~~~~Hk~iL~a~S-~~f~~l~~~~~~----e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~ 239 (564)
-|++.|||+.|...+..|+... .+|..||.+.+. .....++-+ +-++..|..+|.|+.+|.+.++.+
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~p~~ 78 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKD 78 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCCCTT
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCCCCC
Confidence 4778899999999999998765 468888875421 112344555 689999999999999999877654
No 172
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=96.64 E-value=0.0025 Score=52.62 Aligned_cols=79 Identities=11% Similarity=0.088 Sum_probs=58.4
Q ss_pred CeEEEe-cCeeechhhHhhcccChhHHHhccc--cccccccceEEcCCCCHHHHHHHhhhHccCC-----------ccCC
Q 008477 172 DVVFYV-QGRPIEAHRVILSARSVFFRRKFET--DWRYRNEIRFSREKLSYPALYGLIHFFYSDR-----------LEIA 237 (564)
Q Consensus 172 Dv~~~v-~~~~~~~Hk~iL~a~S~~f~~l~~~--~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~-----------~~i~ 237 (564)
-|+++. +|..|.+.+. .+..|..++.|+.. .+.+.....|++++|+..+++.+++|++.-. ..++
T Consensus 18 ~v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd 96 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKRE-HALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA 96 (112)
T ss_dssp EEEEECTTSCEEEEEHH-HHHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCC
T ss_pred EEEEEcCCCCEEEECHH-HHHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccC
Confidence 466774 8899999999 47899999999974 3345445689999999999999999997522 3466
Q ss_pred cccHHHHHHHHhHh
Q 008477 238 VDDMEDLVKICKVC 251 (564)
Q Consensus 238 ~~~~~~ll~~a~~c 251 (564)
.+.+.+|+.+|++.
T Consensus 97 ~~~lfeLi~AAnyL 110 (112)
T 1vcb_B 97 PEIALELLMAANFL 110 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 67778888887654
No 173
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=96.31 E-value=0.012 Score=52.40 Aligned_cols=115 Identities=16% Similarity=0.166 Sum_probs=69.7
Q ss_pred CeEEEe-cCeeechhhHhhcccChhHHHhcccccc----ccccceEEcCCCCHHHHHHHhhhHccCCcc-CCcccHHHHH
Q 008477 172 DVVFYV-QGRPIEAHRVILSARSVFFRRKFETDWR----YRNEIRFSREKLSYPALYGLIHFFYSDRLE-IAVDDMEDLV 245 (564)
Q Consensus 172 Dv~~~v-~~~~~~~Hk~iL~a~S~~f~~l~~~~~~----e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~-i~~~~~~~ll 245 (564)
-|+++. +|..|.+++.+ +..|..++.|+..... +.....|++++|+..+++.+++|++.-.-. .+..+-.. -
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~-~ 85 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDD-S 85 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC-------
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCccccccc-c
Confidence 566765 78999999997 7789999999974322 123367999999999999999999864321 11100000 0
Q ss_pred HHH---hHhcHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHhh
Q 008477 246 KIC---KVCKCESLQRIIEKELIHQKYAEYKALRDVDNSQKRFILQ 288 (564)
Q Consensus 246 ~~a---~~c~~~~L~~~l~~~l~~~~~a~~~~~~~L~~~~~~~i~~ 288 (564)
... .....+|+.-.-+..+.+...|...+...|...+.+.+..
T Consensus 86 ~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~ 131 (169)
T 3v7d_A 86 RKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAE 131 (169)
T ss_dssp --CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 000 0000222321112456677777888888888877777654
No 174
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.61 E-value=0.015 Score=47.34 Aligned_cols=45 Identities=16% Similarity=0.013 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHhhcCC-C-CCCCccchhHHHH
Q 008477 261 EKELIHQKYAEYKALRDVDNSQKRFILQGSA-L-PEEDRLPAALSRI 305 (564)
Q Consensus 261 ~~~l~~~~~a~~~~~~~L~~~~~~~i~~~~~-v-~~~~~l~~~l~~~ 305 (564)
+||++++.+|+.|+++.|.+.|.+||.+||. | ..++|+..+...+
T Consensus 11 ~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L 57 (105)
T 2eqx_A 11 GNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLL 57 (105)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHH
Confidence 4899999999999999999999999999998 6 7777766555444
No 175
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=94.48 E-value=0.14 Score=42.80 Aligned_cols=96 Identities=13% Similarity=0.049 Sum_probs=66.2
Q ss_pred cEEEEeCCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHhHhhccCCCCCCCCccc
Q 008477 344 DVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQV 423 (564)
Q Consensus 344 Dv~~~~~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~l~~~~~ 423 (564)
-|++-|||+.|..-+..|...- .+||..+..+ .........+-| |=++..|+.||+|+-+|.+ .++.+.
T Consensus 14 ~V~LNVGG~~F~t~~~TL~~~p---~S~L~~~~~~-----~~~~~~~g~~Fi-DRdp~~F~~ILnflR~G~l-~~p~~~- 82 (124)
T 1s1g_A 14 LIVLNVSGRRFQTWRTTLERYP---DTLLGSTEKE-----FFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKL-HYPRYE- 82 (124)
T ss_dssp EEEEEETTEEEEEEHHHHTTST---TSSTTSSGGG-----GTBCSSSCSEEE-CSCHHHHHHHHHHHHHSCB-CCCTTS-
T ss_pred EEEEEeCCEEEEEeHHHHhcCC---CceecccCCc-----ccccCCCCcEEE-cCChHHHHHHHHHHhcCCC-CCCCCc-
Confidence 4778899999999999996432 2344321111 011233456777 5699999999999999999 465541
Q ss_pred ccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccChhhHH--HHHHHHHHh
Q 008477 424 CCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLLFPLK--RAVADVLLL 473 (564)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l~~L~--~~c~~~l~~ 473 (564)
.+..+++-|++|+|+.+. .-|.....+
T Consensus 83 -----------------------~~~~l~~Ea~fy~i~~l~l~~cC~~~~~~ 111 (124)
T 1s1g_A 83 -----------------------CISAYDDELAFYGILPEIIGDCCYEEYKD 111 (124)
T ss_dssp -----------------------CHHHHHHHHHHTTCCGGGBCHHHHHHHHH
T ss_pred -----------------------CHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 478899999999999873 445444443
No 176
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=94.33 E-value=0.032 Score=46.15 Aligned_cols=87 Identities=14% Similarity=0.074 Sum_probs=62.3
Q ss_pred cEEEEeCCeEEecchhhhhcccH-HHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHhHhhccCCCCCCCCcc
Q 008477 344 DVCVRVDKKIFRCHQVVLASRSE-YFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQ 422 (564)
Q Consensus 344 Dv~~~~~~~~~~~Hk~iL~arS~-~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~l~~~~ 422 (564)
-|++-|||+.|...+..|...-. .+.+|+.+...+. .....+-+ |=++..|+.||+|+.+|.+ .++.+-
T Consensus 6 ~V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~--------~~~g~~Fi-DRdp~~F~~ILnylR~G~l-~~p~~~ 75 (115)
T 3kvt_A 6 RVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYD--------PVLNEYFF-DRHPGVFAQIINYYRSGKL-HYPTDV 75 (115)
T ss_dssp EEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEE--------TTTTEEEE-CSCTTTHHHHHHHHHHSCB-CCCSSS
T ss_pred EEEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCC--------CCCCcEEE-ecChHHHHHHHHHhcCCCC-CCCCcc
Confidence 37788999999999999975432 3444554310111 12346666 6789999999999999999 465541
Q ss_pred cccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccChhhHH
Q 008477 423 VCCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLLFPLK 464 (564)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l~~L~ 464 (564)
....+++-|++|+|+...
T Consensus 76 ------------------------~~~~~~~Ea~fy~i~~~~ 93 (115)
T 3kvt_A 76 ------------------------CGPLFEEELEFWGLDSNQ 93 (115)
T ss_dssp ------------------------CHHHHHHHHHHHTCCGGG
T ss_pred ------------------------cHHHHHHHHHHhCCChHH
Confidence 457899999999998864
No 177
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.76 E-value=0.011 Score=48.32 Aligned_cols=72 Identities=10% Similarity=-0.067 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHHHhhcchhhcchh-hHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHH------HHHHHHhcCCCCCCCCc
Q 008477 479 SPAELCHWLILSDMYAAIVCSSLS-ILLVFLFSIFYGVLKQI-CLTLGKLLINLWVV------DHIFLRLLSPTSQNPSS 550 (564)
Q Consensus 479 ~~~n~~~~l~~A~~~~~~~c~~l~-~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 550 (564)
+++||+.++.+|+.|+ |..+. .+..|+..+|.++.+.. ...+..+.+...+. ..+|..++.|-.++|..
T Consensus 9 ~~~NCl~i~~~A~~~~---~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL~sdv~~E~~vf~av~~Wv~~d~~~ 85 (105)
T 2eqx_A 9 QVGNCLQVMWLADRHS---DPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIISDGVPCSQNPTEAIEAWINFNKEE 85 (105)
T ss_dssp CTTTHHHHHHHHHHTT---CHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHHHTCEETTSCHHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHH
Confidence 7788888888888888 76666 66666766666655421 12222222222221 13556666666666655
Q ss_pred ccc
Q 008477 551 KFK 553 (564)
Q Consensus 551 ~~~ 553 (564)
|.+
T Consensus 86 R~~ 88 (105)
T 2eqx_A 86 REA 88 (105)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 178
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=93.39 E-value=0.16 Score=46.13 Aligned_cols=67 Identities=16% Similarity=0.118 Sum_probs=49.8
Q ss_pred CeEEEecCeeechhhHhhcccC-hhHHHhccccc--c--ccccceEEcCCCCHHHHHHHhhhHccCCccCCcc
Q 008477 172 DVVFYVQGRPIEAHRVILSARS-VFFRRKFETDW--R--YRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVD 239 (564)
Q Consensus 172 Dv~~~v~~~~~~~Hk~iL~a~S-~~f~~l~~~~~--~--e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~ 239 (564)
=|++.|||..|...+..|.... .+|..||.+.. . .....++-+ +-++..|..+|.|+-+|.+.++.+
T Consensus 13 ~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~lP~~ 84 (202)
T 3drx_A 13 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKD 84 (202)
T ss_dssp EEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCCCCTT
T ss_pred EEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccCCCCC
Confidence 4678899999999999997653 47888887542 1 112334555 578999999999999999987654
No 179
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=93.35 E-value=0.071 Score=42.80 Aligned_cols=86 Identities=12% Similarity=0.092 Sum_probs=59.1
Q ss_pred EEEEeCCeEEecchhhhhcccH-HHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHhHhhcc-CCCCCCCCcc
Q 008477 345 VCVRVDKKIFRCHQVVLASRSE-YFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYT-DGLKDIDPDQ 422 (564)
Q Consensus 345 v~~~~~~~~~~~Hk~iL~arS~-~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt-~~~~~l~~~~ 422 (564)
|++-|+|+.|...+..|...-. .+.+|+.....+. .....+-+ |=++..|+.||+|+-+ |++ .++.+-
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~--------~~~~eyFi-DRdp~~F~~ILnflR~~G~l-~~p~~~ 72 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYD--------PLRNEYFF-DRNRPSFDAILYFYQSGGRL-RRPVNV 72 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEE--------TTTTEEEE-CSCSTTHHHHHHHHHTTSCC-CCCTTS
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccC--------CCceeEEE-cCChHHHHHHHHHHhcCCcc-cCCCCC
Confidence 6788999999999999954311 1222232100111 12346666 6689999999999998 888 455541
Q ss_pred cccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccChhhHH
Q 008477 423 VCCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLLFPLK 464 (564)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l~~L~ 464 (564)
.+..+++-|++|+|+.+.
T Consensus 73 ------------------------~~~~~~~Ea~fy~i~~~~ 90 (100)
T 1t1d_A 73 ------------------------PLDVFSEEIKFYELGENA 90 (100)
T ss_dssp ------------------------CHHHHHHHHHHTTCCHHH
T ss_pred ------------------------CHHHHHHHHHHcCCCHHH
Confidence 467899999999998865
No 180
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=92.23 E-value=0.19 Score=42.92 Aligned_cols=87 Identities=14% Similarity=0.090 Sum_probs=62.1
Q ss_pred ccEEEEeCCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHhHhhccCCCCCCCCcc
Q 008477 343 ADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQ 422 (564)
Q Consensus 343 ~Dv~~~~~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~l~~~~ 422 (564)
.-|++-|+|+.|...+..|...- .+||..+..+ .........+-| |=++..|+.||+|+-+|.+ .++.+-
T Consensus 35 ~~V~LNVGG~~F~T~~~TL~~~P---~S~L~~~~~~-----~~~~~~~g~yFi-DRdp~~F~~ILnflR~G~l-~~p~~~ 104 (140)
T 2nz0_B 35 ELIVLNVSGRRFQTWRTTLERYP---DTLLGSTEKE-----FFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKL-HYPRYE 104 (140)
T ss_dssp CEEEEEETTEEEEEEHHHHHTCT---TSTTTSGGGG-----GSEETTTTEEEE-CSCHHHHHHHHHHHHHSSB-CCCTTS
T ss_pred CEEEEEECCEEEEeeHHHHhcCC---CeeecccCCc-----ccccCCCCeEEE-eCCcHHHHHHHHHHhcCCc-CCCCCc
Confidence 34678899999999999996432 3455431111 011123456777 6699999999999999999 465541
Q ss_pred cccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccChhhH
Q 008477 423 VCCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLLFPL 463 (564)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l~~L 463 (564)
.+..+++-|++|+|+.+
T Consensus 105 ------------------------~~~~l~eEa~fy~i~~l 121 (140)
T 2nz0_B 105 ------------------------CISAYDDELAFYGILPE 121 (140)
T ss_dssp ------------------------CHHHHHHHHHHHTCCGG
T ss_pred ------------------------CHHHHHHHHHHcCCChH
Confidence 47889999999999987
No 181
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=90.00 E-value=0.23 Score=40.24 Aligned_cols=85 Identities=13% Similarity=0.119 Sum_probs=59.8
Q ss_pred EEEEeCCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHhHhhccCCCCCCCCcccc
Q 008477 345 VCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQVC 424 (564)
Q Consensus 345 v~~~~~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt~~~~~l~~~~~~ 424 (564)
|++-|+|+.|...+..|...- .+||.....+. ........+-+ |=++..|+.||+|+-+|.+ .++.+-
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p---~s~L~~~~~~~-----~~~~~~~~~Fi-DRdp~~F~~ILnflR~g~l-~~p~~~-- 69 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYP---DTLLGSSERDF-----FYHPETQQYFF-DRDPDIFRHILNFYRTGKL-HYPRHE-- 69 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSC---SSSTTSGGGGG-----GEEGGGTEEEE-CSCTTTHHHHHHHHHHSCB-CCCTTS--
T ss_pred EEEEECCEEEEEeHHHHhcCC---CccccccCCcc-----cccCCCCcEEE-eCCcHHHHHHHHHHhcCCC-CCCCCc--
Confidence 678899999999999996532 23443210110 01122346666 5689999999999999998 455541
Q ss_pred cCccchhhhcCCCCCCCCCchHHHHHHHHHhcccChhhH
Q 008477 425 CNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLLFPL 463 (564)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l~~L 463 (564)
.+..+++-|++|+|+.+
T Consensus 70 ----------------------~~~~l~~Ea~fy~i~~l 86 (105)
T 1nn7_A 70 ----------------------CISAYDEELAFFGLIPE 86 (105)
T ss_dssp ----------------------CHHHHHHHHHHHTCCSC
T ss_pred ----------------------CHHHHHHHHHHcCCCHH
Confidence 46789999999999987
No 182
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=87.96 E-value=0.47 Score=39.03 Aligned_cols=79 Identities=14% Similarity=0.035 Sum_probs=53.6
Q ss_pred CeEEEecCeeechhhHhhcccC-hhHHHhccccc-cccccceEEcCCCCHHHHHHHhhhHccCCccCCcc-cHHHHHHHH
Q 008477 172 DVVFYVQGRPIEAHRVILSARS-VFFRRKFETDW-RYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVD-DMEDLVKIC 248 (564)
Q Consensus 172 Dv~~~v~~~~~~~Hk~iL~a~S-~~f~~l~~~~~-~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~-~~~~ll~~a 248 (564)
=|++.|||..|...+..|.... ..+..|+.+.. ......++-+ +-++..|..+|.|+-+|.+.++.+ ....+++-|
T Consensus 6 ~V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~~p~~~~~~~~~~Ea 84 (115)
T 3kvt_A 6 RVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEEL 84 (115)
T ss_dssp EEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHH
T ss_pred EEEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCCCCCcccHHHHHHHH
Confidence 3778899999999998887653 34556665321 1123445555 578999999999999999977654 344555545
Q ss_pred hHh
Q 008477 249 KVC 251 (564)
Q Consensus 249 ~~c 251 (564)
+++
T Consensus 85 ~fy 87 (115)
T 3kvt_A 85 EFW 87 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 433
No 183
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=82.88 E-value=1.3 Score=36.86 Aligned_cols=77 Identities=10% Similarity=0.117 Sum_probs=51.1
Q ss_pred CeEEEecCeeechhhHhhcccChhHHHhccc--c--ccccccceEEcCCCCHHHHHHHhhhHccCCccCCcc-cHHHHHH
Q 008477 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFET--D--WRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVD-DMEDLVK 246 (564)
Q Consensus 172 Dv~~~v~~~~~~~Hk~iL~a~S~~f~~l~~~--~--~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~-~~~~ll~ 246 (564)
-|++.|||+.|..-+..|...-. .+|.. . .......++-+ +=++..|+.+|.|+-+|.+.++.+ .+..+++
T Consensus 14 ~V~LNVGG~~F~t~~~TL~~~p~---S~L~~~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~l~~ 89 (124)
T 1s1g_A 14 LIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISAYDD 89 (124)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTT---SSTTSSGGGGTBCSSSCSEEE-CSCHHHHHHHHHHHHHSCBCCCTTSCHHHHHH
T ss_pred EEEEEeCCEEEEEeHHHHhcCCC---ceecccCCcccccCCCCcEEE-cCChHHHHHHHHHHhcCCCCCCCCcCHHHHHH
Confidence 47788999999999988865422 12221 1 11122344555 569999999999999999877654 3555666
Q ss_pred HHhHhc
Q 008477 247 ICKVCK 252 (564)
Q Consensus 247 ~a~~c~ 252 (564)
-|++++
T Consensus 90 Ea~fy~ 95 (124)
T 1s1g_A 90 ELAFYG 95 (124)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 665443
No 184
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=81.55 E-value=1.7 Score=37.01 Aligned_cols=76 Identities=11% Similarity=0.121 Sum_probs=50.3
Q ss_pred CeEEEecCeeechhhHhhcccChhHHHhcccc----ccccccceEEcCCCCHHHHHHHhhhHccCCccCCcc-cHHHHHH
Q 008477 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETD----WRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVD-DMEDLVK 246 (564)
Q Consensus 172 Dv~~~v~~~~~~~Hk~iL~a~S~~f~~l~~~~----~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~-~~~~ll~ 246 (564)
-|++.|||..|...+..|...-. .+|... .......++-+ +=++..|+.+|+|+-+|.+.++.+ .+..+.+
T Consensus 36 ~V~LNVGG~~F~T~~~TL~~~P~---S~L~~~~~~~~~~~~~g~yFi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~l~e 111 (140)
T 2nz0_B 36 LIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISAYDD 111 (140)
T ss_dssp EEEEEETTEEEEEEHHHHHTCTT---STTTSGGGGGSEETTTTEEEE-CSCHHHHHHHHHHHHHSSBCCCTTSCHHHHHH
T ss_pred EEEEEECCEEEEeeHHHHhcCCC---eeecccCCcccccCCCCeEEE-eCCcHHHHHHHHHHhcCCcCCCCCcCHHHHHH
Confidence 57788999999999988865422 222221 11122345555 579999999999999999877654 3455555
Q ss_pred HHhHh
Q 008477 247 ICKVC 251 (564)
Q Consensus 247 ~a~~c 251 (564)
-|+++
T Consensus 112 Ea~fy 116 (140)
T 2nz0_B 112 ELAFY 116 (140)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 55444
No 185
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=79.85 E-value=1.5 Score=34.99 Aligned_cols=78 Identities=17% Similarity=0.209 Sum_probs=49.8
Q ss_pred eEEEecCeeechhhHhhcccC-hhHHHhccc-cccccccceEEcCCCCHHHHHHHhhhHcc-CCccCCcc-cHHHHHHHH
Q 008477 173 VVFYVQGRPIEAHRVILSARS-VFFRRKFET-DWRYRNEIRFSREKLSYPALYGLIHFFYS-DRLEIAVD-DMEDLVKIC 248 (564)
Q Consensus 173 v~~~v~~~~~~~Hk~iL~a~S-~~f~~l~~~-~~~e~~~~~i~l~~v~~~~~~~lL~ylYt-g~~~i~~~-~~~~ll~~a 248 (564)
|++.|+|..|...+..|...- ..+.+|+.. ........++-+ +-++..|+.+|.|+-+ |.+.++.+ .+..+.+-|
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi-DRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~Ea 81 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEI 81 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE-cCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHHH
Confidence 678899999999888885432 223333322 111123345555 6789999999999999 89876554 344444445
Q ss_pred hHh
Q 008477 249 KVC 251 (564)
Q Consensus 249 ~~c 251 (564)
+++
T Consensus 82 ~fy 84 (100)
T 1t1d_A 82 KFY 84 (100)
T ss_dssp HHT
T ss_pred HHc
Confidence 444
No 186
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=78.48 E-value=2.5 Score=33.93 Aligned_cols=78 Identities=8% Similarity=0.080 Sum_probs=49.5
Q ss_pred eEEEecCeeechhhHhhcccCh-hHHHhccccccccccceEEcCCCCHHHHHHHhhhHccCCccCCcc-cHHHHHHHHhH
Q 008477 173 VVFYVQGRPIEAHRVILSARSV-FFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYSDRLEIAVD-DMEDLVKICKV 250 (564)
Q Consensus 173 v~~~v~~~~~~~Hk~iL~a~S~-~f~~l~~~~~~e~~~~~i~l~~v~~~~~~~lL~ylYtg~~~i~~~-~~~~ll~~a~~ 250 (564)
|++.|||+.|...+..|..... .+...-..........++-+ +=++..|+.+|.|+-+|.+.++.+ .+..+.+-|++
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~~Fi-DRdp~~F~~ILnflR~g~l~~p~~~~~~~l~~Ea~f 80 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPDTLLGSSERDFFYHPETQQYFF-DRDPDIFRHILNFYRTGKLHYPRHECISAYDEELAF 80 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCSSSTTSGGGGGGEEGGGTEEEE-CSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCCccccccCCcccccCCCCcEEE-eCCcHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH
Confidence 6789999999998888865432 12211000011122345555 569999999999999999877654 34555555544
Q ss_pred h
Q 008477 251 C 251 (564)
Q Consensus 251 c 251 (564)
+
T Consensus 81 y 81 (105)
T 1nn7_A 81 F 81 (105)
T ss_dssp H
T ss_pred c
Confidence 4
No 187
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=51.84 E-value=14 Score=38.70 Aligned_cols=88 Identities=13% Similarity=0.030 Sum_probs=57.8
Q ss_pred cEEEEeCCeEEecchhhhhcccHHHHHHhcCCccccccCCCCCCCCCCcEEcCCCCHHHHHHHhHhhcc-CCCCCCCCcc
Q 008477 344 DVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYT-DGLKDIDPDQ 422 (564)
Q Consensus 344 Dv~~~~~~~~~~~Hk~iL~arS~~F~~~~~~~~~~~e~~~~~~~~~~~~i~l~~v~~~~~~~~l~~iYt-~~~~~l~~~~ 422 (564)
-|++-|+|+.|...+..|..- =.+++.. .+... ..-.....++-+ |=++..|+.+|+|+.+ |++ ..+.+-
T Consensus 53 ~v~lNVgG~~f~t~~~tL~~~---p~s~l~~--~~~~~--~~~~~~~~~~f~-DR~~~~F~~IL~~~r~~g~l-~~p~~~ 123 (514)
T 2r9r_B 53 RVVINISGLRFETQLKTLAQF---PETLLGD--PKKRM--RYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRL-RRPVNV 123 (514)
T ss_dssp EEEEEETTEEEEEEHHHHTTS---TTSTTTC--HHHHG--GGEETTTTEEEE-CSCHHHHHHHHHHHHHTSCC-CCCTTS
T ss_pred EEEEEeCCEEEEecHHHHhcC---CCCcccc--cccCC--cccCCCCCCEEE-cCChHHHHHHHHHHhcCCcc-ccCCcc
Confidence 366789999999999998532 1233321 01000 000112346666 6799999999999999 988 455441
Q ss_pred cccCccchhhhcCCCCCCCCCchHHHHHHHHHhcccChhhHH
Q 008477 423 VCCNSVTWLVALGSNLPNFVPFDEQAEEMFDAASRYLLFPLK 464 (564)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~l~~L~ 464 (564)
....+.+-|++|+++.+.
T Consensus 124 ------------------------~~~~~~~E~~f~~i~~~~ 141 (514)
T 2r9r_B 124 ------------------------PLDIFSEEIRFYELGEEA 141 (514)
T ss_dssp ------------------------CHHHHHHHHHHTTCCHHH
T ss_pred ------------------------cHHHHHHHHHhcCCCHHH
Confidence 345778889999998764
No 188
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=24.82 E-value=55 Score=20.61 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=15.0
Q ss_pred hhHHHHHhcCCHHHHHHHHH
Q 008477 35 GDVFEASRAGDVDRLRYILE 54 (564)
Q Consensus 35 ~~l~~Aa~~g~~~~v~~Ll~ 54 (564)
.++..||..|+++.++.|-.
T Consensus 15 QqiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 15 KQMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHH
Confidence 34577888899998887743
Done!