BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008479
(564 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RD3|A Chain A, Crystal Structure Of Tena Homologue (Hp1287) From
Helicobacter Pylori
pdb|2RD3|D Chain D, Crystal Structure Of Tena Homologue (Hp1287) From
Helicobacter Pylori
Length = 223
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 22/209 (10%)
Query: 35 PFTVCLASGNLKLETFRHYIAQDFHFLKAFSQXXXXXXXXXXXXXXKLSISELRKGVLE- 93
PF + G L+ + FR YI QD+ FL +++ S + +L
Sbjct: 28 PFVQGIGRGTLERDKFRFYIIQDYLFLLEYAKVFALGVVKACDEAVMREFSNAIQDILNN 87
Query: 94 ELKMHDSFVKEWGTDLAKM--ATVNSATVKYTEFLLATASGKVEGVKGPGKLATPFEKTK 151
E+ +H+ +++E ++ A A YT ++LA EG KG K +
Sbjct: 88 EMSIHNHYIRELQITQKELQNACPTLANKSYTSYMLA------EGFKGSIK--------E 133
Query: 152 VAAYTLGAMSPCMRLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLD 211
VAA A+ C Y + + + NA E + Y WI YSS+ FQA N +LLD
Sbjct: 134 VAA----AVLSCGWSYLVIAQNLSQIPNALE-HAFYGHWIKGYSSKEFQACVNWNINLLD 188
Query: 212 KLSVSLTGEELDIIEKLYHQAMKLEVEFF 240
L+++ + +E++ +++++ + E F+
Sbjct: 189 SLTLASSKQEIEKLKEIFITTSEYEYLFW 217
>pdb|3IBX|A Chain A, Crystal Structure Of F47y Variant Of Tena (Hp1287) From
Helicobacter Pylori
pdb|3IBX|D Chain D, Crystal Structure Of F47y Variant Of Tena (Hp1287) From
Helicobacter Pylori
Length = 221
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 95/209 (45%), Gaps = 22/209 (10%)
Query: 35 PFTVCLASGNLKLETFRHYIAQDFHFLKAFSQXXXXXXXXXXXXXXKLSISELRKGVLE- 93
PF + G L+ + FR YI QD+ +L +++ S + +L
Sbjct: 26 PFVQGIGRGTLERDKFRFYIIQDYLYLLEYAKVFALGVVKACDEAVMREFSNAIQDILNN 85
Query: 94 ELKMHDSFVKEWGTDLAKM--ATVNSATVKYTEFLLATASGKVEGVKGPGKLATPFEKTK 151
E+ +H+ +++E ++ A A YT ++LA EG KG K +
Sbjct: 86 EMSIHNHYIRELQITQKELQNACPTLANKSYTSYMLA------EGFKGSIK--------E 131
Query: 152 VAAYTLGAMSPCMRLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLD 211
VAA A+ C Y + + + NA E + Y WI YSS+ FQA N +LLD
Sbjct: 132 VAA----AVLSCGWSYLVIAQNLSQIPNALE-HAFYGHWIKGYSSKEFQACVNWNINLLD 186
Query: 212 KLSVSLTGEELDIIEKLYHQAMKLEVEFF 240
L+++ + +E++ +++++ + E F+
Sbjct: 187 SLTLASSKQEIEKLKEIFITTSEYEYLFW 215
>pdb|2GM7|A Chain A, Tena HomologTHI-4 Thiaminase From Pyrobaculum Aerophilum
pdb|2GM7|B Chain B, Tena HomologTHI-4 Thiaminase From Pyrobaculum Aerophilum
pdb|2GM7|C Chain C, Tena HomologTHI-4 Thiaminase From Pyrobaculum Aerophilum
pdb|2GM7|D Chain D, Tena HomologTHI-4 Thiaminase From Pyrobaculum Aerophilum
pdb|2GM8|A Chain A, Tena HomologTHI-4 Thiaminase Complexed With Product
4-Amino-5- Hydroxymethyl-2-Methylpyrimidine
pdb|2GM8|B Chain B, Tena HomologTHI-4 Thiaminase Complexed With Product
4-Amino-5- Hydroxymethyl-2-Methylpyrimidine
pdb|2GM8|C Chain C, Tena HomologTHI-4 Thiaminase Complexed With Product
4-Amino-5- Hydroxymethyl-2-Methylpyrimidine
pdb|2GM8|D Chain D, Tena HomologTHI-4 Thiaminase Complexed With Product
4-Amino-5- Hydroxymethyl-2-Methylpyrimidine
Length = 221
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 88/211 (41%), Gaps = 27/211 (12%)
Query: 35 PFTVCLASGNLKLETFRHYIAQDFHFLKAFSQXXXXXXXXXXXXXXKLSISELRKG-VLE 93
PF L +G L +E F++Y+ QD+++L F++ + EL G V
Sbjct: 30 PFVAELYAGTLPMEKFKYYLLQDYNYLVNFAKALSLAASRAPSVDLMKTALELAYGTVTG 89
Query: 94 ELKMHDSFVKEWGTDL--AKMATVNSATVKYTEFLLATASGKVEGVKGPGKLATPFEKTK 151
E+ +++ +KE G L A A N V Y +L +T + +EG
Sbjct: 90 EMANYEALLKEVGLSLRDAAEAEPNRVNVSYMAYLKSTCA--LEGFYQ------------ 135
Query: 152 VAAYTLGAMSPCMRLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLD 211
+ A+ PC YA + + L N H Y KW Y S ++ + +LD
Sbjct: 136 ----CMAALLPCFWSYAEIAERHGGKLRENP-VHVYKKWASVYLSPEYRGLVERLRAVLD 190
Query: 212 KLSVSLTGEELDIIEKLYHQAMKLEVEFFCA 242
S L+ EEL + +A E+EF+ A
Sbjct: 191 --SSGLSAEEL---WPYFKEASLYELEFWQA 216
>pdb|3MVU|A Chain A, Crystal Structure Of A Tena Family Transcription Regulator
(Tm1040_3656) From Silicibacter Sp. Tm1040 At 1.80 A
Resolu
Length = 226
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 84/217 (38%), Gaps = 31/217 (14%)
Query: 33 YSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQXXXXXXXXXXXXXXKL-SISELRKGV 91
+ F L +G L E F HY+ QD+ FL FS+ L ++ + V
Sbjct: 26 HHAFVEGLKAGTLPREAFLHYLQQDYVFLIHFSRAWALAVVKSETHSEXLAAVGTVNALV 85
Query: 92 LEELKMHDSFVKEWG-TDLAKMATVNSA-TVKYTEFLLATASGKVEGVKGPGKLATPFEK 149
EE ++H + G + A AT A + YT F+L G G
Sbjct: 86 AEEXQLHIGICEASGISQEALFATRERAENLAYTRFVLEA------GYSG---------- 129
Query: 150 TKVAAYTLGAMSPCMRLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDL 209
L A++PC+ Y +GK L A + Y WID Y + +QA+ L
Sbjct: 130 --DLLDLLAALAPCVXGYGEIGKR----LTAEATSTLYGDWIDTYGGDDYQAACKAVGTL 183
Query: 210 LDKLSVSLTGEEL------DIIEKLYHQAMKLEVEFF 240
LD G E + + +H A +LEV F+
Sbjct: 184 LDDALERRLGAEFTSSPRWSRLCQTFHTATELEVGFW 220
>pdb|1YAF|A Chain A, Structure Of Tena From Bacillus Subtilis
pdb|1YAF|B Chain B, Structure Of Tena From Bacillus Subtilis
pdb|1YAF|C Chain C, Structure Of Tena From Bacillus Subtilis
pdb|1YAF|D Chain D, Structure Of Tena From Bacillus Subtilis
pdb|1YAK|A Chain A, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
pdb|1YAK|B Chain B, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
pdb|1YAK|C Chain C, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
pdb|1YAK|D Chain D, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
Length = 263
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 77/189 (40%), Gaps = 24/189 (12%)
Query: 35 PFTVCLASGNLKLETFRHYIAQDFHFLKAFSQXXXXXXXXXXXXXXKLSISELRKGVLE- 93
PF + G L ++ F++Y+ QD ++L F++ ++ +G E
Sbjct: 49 PFVQGIGDGTLPIDRFKYYVLQDSYYLTHFAKVQSFGAAYAKDLYTTGRMASHAQGTYEA 108
Query: 94 ELKMHDSFVK--EWGTDLAKMATVNSATVKYTEFLLATASGKVEGVKGPGKLATPFEKTK 151
E+ +H F + E + K + YT + + L+ F
Sbjct: 109 EMALHREFAELLEISEEERKAFKPSPTAYSYTSHMYRSV------------LSGNF---- 152
Query: 152 VAAYTLGAMSPCMRLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLD 211
A L A+ PC LY +G++ LL+ + G+ Y KWI Y + F+ + + D
Sbjct: 153 --AEILAALLPCYWLYYEVGEK---LLHCDPGHPIYQKWIGTYGGDWFRQQVEEQINRFD 207
Query: 212 KLSVSLTGE 220
+L+ + T E
Sbjct: 208 ELAENSTEE 216
>pdb|2QCX|A Chain A, Crystal Structure Of Bacillus Subtilis Tena Y112f Mutant
Complexed With Formyl Aminomethyl Pyrimidine
pdb|2QCX|B Chain B, Crystal Structure Of Bacillus Subtilis Tena Y112f Mutant
Complexed With Formyl Aminomethyl Pyrimidine
Length = 263
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 78/187 (41%), Gaps = 20/187 (10%)
Query: 35 PFTVCLASGNLKLETFRHYIAQDFHFLKAFSQXXXXXXXXXXXXXXKLSISELRKGVLE- 93
PF + G L ++ F++Y+ QD ++L F++ ++ +G E
Sbjct: 49 PFVQGIGDGTLPIDRFKYYVLQDSYYLTHFAKVQSFGAAYAKDLYTTGRMASHAQGTYEA 108
Query: 94 ELKMHDSFVKEWGTDLAKMATVNSATVKYTEFLLATASGKVEGVKGPGKLATPFEKTKVA 153
E+ +H F +L +++ K + + S V L+ F
Sbjct: 109 EMALHREFA-----ELLEISEEERKAFKPSPTAYSFTSHMYRSV-----LSGNF------ 152
Query: 154 AYTLGAMSPCMRLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKL 213
A L A+ PC LY +G++ LL+ + G+ Y KWI Y + F+ + + D+L
Sbjct: 153 AEILAALLPCYWLYYEVGEK---LLHCDPGHPIYQKWIGTYGGDWFRQQVEEQINRFDEL 209
Query: 214 SVSLTGE 220
+ + T E
Sbjct: 210 AENSTEE 216
>pdb|1TYH|A Chain A, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
pdb|1TYH|B Chain B, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
pdb|1TYH|D Chain D, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
pdb|1TYH|E Chain E, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
Length = 248
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 20/187 (10%)
Query: 35 PFTVCLASGNLKLETFRHYIAQDFHFLKAFSQXXXXXXXXXXXXXXKLSISELRKGVLE- 93
PF + G L ++ F++Y+ QD ++L F++ + +G E
Sbjct: 24 PFVQGIGDGTLPIDRFKYYVLQDSYYLTHFAKVQSFGAAYAKDLYTTGRXASHAQGTYEA 83
Query: 94 ELKMHDSFVKEWGTDLAKMATVNSATVKYTEFLLATASGKVEGVKGPGKLATPFEKTKVA 153
E +H F +L +++ K + + S V L+ F
Sbjct: 84 EXALHREFA-----ELLEISEEERKAFKPSPTAYSYTSHXYRSV-----LSGNF------ 127
Query: 154 AYTLGAMSPCMRLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKL 213
A L A+ PC LY +G++ LL+ + G+ Y KWI Y + F+ + + D+L
Sbjct: 128 AEILAALLPCYWLYYEVGEK---LLHCDPGHPIYQKWIGTYGGDWFRQQVEEQINRFDEL 184
Query: 214 SVSLTGE 220
+ + T E
Sbjct: 185 AENSTEE 191
>pdb|1TO9|A Chain A, Crystal Structure Of Thi-4 Protein From Bacillus Subtilis
Length = 260
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 20/187 (10%)
Query: 35 PFTVCLASGNLKLETFRHYIAQDFHFLKAFSQXXXXXXXXXXXXXXKLSISELRKGVLE- 93
PF + G L ++ F++Y+ QD ++L F++ + +G E
Sbjct: 46 PFVQGIGDGTLPIDRFKYYVLQDSYYLTHFAKVQSFGAAYAKDLYTTGRXASHAQGTYEA 105
Query: 94 ELKMHDSFVKEWGTDLAKMATVNSATVKYTEFLLATASGKVEGVKGPGKLATPFEKTKVA 153
E +H F +L +++ K + + S V L+ F
Sbjct: 106 EXALHREFA-----ELLEISEEERKAFKPSPTAYSYTSHXYRSV-----LSGNF------ 149
Query: 154 AYTLGAMSPCMRLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKL 213
A L A+ PC LY +G++ LL+ + G+ Y KWI Y + F+ + + D+L
Sbjct: 150 AEILAALLPCYWLYYEVGEK---LLHCDPGHPIYQKWIGTYGGDWFRQQVEEQINRFDEL 206
Query: 214 SVSLTGE 220
+ + T E
Sbjct: 207 AENSTEE 213
>pdb|1TO9|B Chain B, Crystal Structure Of Thi-4 Protein From Bacillus Subtilis
Length = 260
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 20/187 (10%)
Query: 35 PFTVCLASGNLKLETFRHYIAQDFHFLKAFSQXXXXXXXXXXXXXXKLSISELRKGVLE- 93
PF + G L ++ F++Y+ QD ++L F++ + +G E
Sbjct: 46 PFVQGIGDGTLPIDRFKYYVLQDSYYLTHFAKVQSFGAAYAKDLYTTGRXASHAQGTYEA 105
Query: 94 ELKMHDSFVKEWGTDLAKMATVNSATVKYTEFLLATASGKVEGVKGPGKLATPFEKTKVA 153
E +H F +L +++ K + + S V L+ F
Sbjct: 106 EXALHREFA-----ELLEISEEERKAFKPSPTAYSYTSHXYRSV-----LSGNF------ 149
Query: 154 AYTLGAMSPCMRLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKL 213
A L A+ PC LY +G++ LL+ + G+ Y KWI Y + F+ + + D+L
Sbjct: 150 AEILAALLPCYWLYYEVGEK---LLHXDPGHPIYQKWIGTYGGDWFRQQVEEQINRFDEL 206
Query: 214 SVSLTGE 220
+ + T E
Sbjct: 207 AENSTEE 213
>pdb|1UDD|A Chain A, Tena Homologue Protein From P.Horikoshii Ot3
pdb|1UDD|B Chain B, Tena Homologue Protein From P.Horikoshii Ot3
pdb|1UDD|C Chain C, Tena Homologue Protein From P.Horikoshii Ot3
pdb|1UDD|D Chain D, Tena Homologue Protein From P.Horikoshii Ot3
Length = 226
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 66/172 (38%), Gaps = 31/172 (18%)
Query: 35 PFTVCLASGNLKLETFRHYIAQDFHFLKAFSQXXXXXXXXXXXXXXKLSISELRKGVLEE 94
PF V L SG L LE F+ Y+ QDF++L ++ I R V E
Sbjct: 24 PFVVQLYSGTLPLEKFKFYVLQDFNYLVGLTRALAVISSKAEYPLMAELIELARDEVTVE 83
Query: 95 LKMHDSFVKEWGTDL-----AKMATVNSATVKYTEFLLATA--SGKVEGVKGPGKLATPF 147
++ + +KE L + VNSA Y +F+LATA +EG
Sbjct: 84 VENYVKLLKELDLTLEDAIKTEPTLVNSA---YMDFMLATAYKGNIIEG----------- 129
Query: 148 EKTKVAAYTLGAMSPCMRLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESF 199
L A+ PC YA + E+H + Y +W Y S +
Sbjct: 130 ---------LTALLPCFWSYAEIA-EYHKDKLRDNPIKIYREWGKVYLSNEY 171
>pdb|3RM5|A Chain A, Structure Of Trifunctional Thi20 From Yeast
pdb|3RM5|B Chain B, Structure Of Trifunctional Thi20 From Yeast
Length = 550
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/222 (19%), Positives = 83/222 (37%), Gaps = 45/222 (20%)
Query: 36 FTVCLASGNLKLETFRHYIAQDFHFLKAFSQXXXXXXXXXXXXXXKLSISELRKGVLEEL 95
F +A G L+ + F+ +I QD+ +L +++ + GV E+
Sbjct: 354 FVKKVADGTLERKKFQFFIEQDYAYLVDYARVHCIAGSKAPCLEDMEKELVIVGGVRTEM 413
Query: 96 KMHDSFVKEWGTDLAKMATVNSATVKYTEFLLATASGKVEGVKGPGKLATPFEKTKVAAY 155
H+ +KE V GVK P + AY
Sbjct: 414 GQHEKRLKE-----------------------------VFGVKDPDYFQKIKRGPALRAY 444
Query: 156 T---------------LGAMSPCMRLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQ 200
+ + +++PC+ Y + + A EG+ Y +W + Y+S ++
Sbjct: 445 SRYFNDVSRRGNWQELVASLTPCLMGYGEALTKMKGKVTAPEGSV-YHEWCETYASSWYR 503
Query: 201 ASALQNEDLLDKLSVSLTGEELDIIEKLYHQAMKLEVEFFCA 242
+ + E LL+ + + E+LD + +Y + +LE F+ A
Sbjct: 504 EAMDEGEKLLNHILETYPPEQLDTLVTIYAEVCELETNFWTA 545
>pdb|4FN6|A Chain A, Structural Characterization Of Thiaminase Type Ii Tena
From Staphylococcus Aureus
pdb|4FN6|B Chain B, Structural Characterization Of Thiaminase Type Ii Tena
From Staphylococcus Aureus
pdb|4FN6|C Chain C, Structural Characterization Of Thiaminase Type Ii Tena
From Staphylococcus Aureus
pdb|4FN6|D Chain D, Structural Characterization Of Thiaminase Type Ii Tena
From Staphylococcus Aureus
Length = 229
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 85/211 (40%), Gaps = 27/211 (12%)
Query: 36 FTVCLASGNLKLETFRHYIAQDFHFLKAFSQXXXXXX-XXXXXXXXKLSISELRKGVLEE 94
F + GN++ + RHY+ D +LK F+ K + ++ V E
Sbjct: 23 FIQKMLLGNIQADALRHYLQADAAYLKEFTNLYALLIPKMNSMNDVKFLVEQIEFMVEGE 82
Query: 95 LKMHD---SFVKEWGTDLAKMATVNSATVKYTEFLLATASGKVEGVKGPGKLATPFEKTK 151
+ HD V E ++ K + Y + + A + +
Sbjct: 83 VLAHDILAQIVGESYEEIIKTKVWPPSGDHYIKHMYFQAHSRENAI-------------- 128
Query: 152 VAAYTLGAMSPCMRLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQN--EDL 209
YT+ AM+P +YA L K + N KW D YS+E + N E L
Sbjct: 129 ---YTIAAMAPXPYIYAELAKRSQSDHKLNREKDT-AKWFDFYSTE---MDDIINVFESL 181
Query: 210 LDKLSVSLTGEELDIIEKLYHQAMKLEVEFF 240
++KL+ S++ +EL+ +++++ ++ E FF
Sbjct: 182 MNKLAESMSDKELEQVKQVFLESCIHERRFF 212
>pdb|3NO6|A Chain A, Crystal Structure Of A Putative Thiaminase Ii (Se1693)
From Staphylococcus Epidermidis Atcc 12228 At 1.65 A
Resolution
pdb|3NO6|B Chain B, Crystal Structure Of A Putative Thiaminase Ii (Se1693)
From Staphylococcus Epidermidis Atcc 12228 At 1.65 A
Resolution
pdb|3NO6|C Chain C, Crystal Structure Of A Putative Thiaminase Ii (Se1693)
From Staphylococcus Epidermidis Atcc 12228 At 1.65 A
Resolution
pdb|3NO6|D Chain D, Crystal Structure Of A Putative Thiaminase Ii (Se1693)
From Staphylococcus Epidermidis Atcc 12228 At 1.65 A
Resolution
Length = 248
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 153 AAYTLGAMSPCMRLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDK 212
AA+T+ A +PC +YA +GK N+ + +KW YS+E + + ++ L D+
Sbjct: 146 AAFTIAAXAPCPYVYAVIGKRAXEDPKLNKESVT-SKWFQFYSTEXDELVDVFDQ-LXDR 203
Query: 213 LSVSLTGEELDIIEKLYHQAMKLEVEFF 240
L+ + E I++ + Q+ E FF
Sbjct: 204 LTKHCSETEKKEIKENFLQSTIHERHFF 231
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 458 PIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSL 508
P +K + +KY ++ +GD V D L +AD+GI IG+ + +
Sbjct: 192 PHEKAEKVKEVQQKY------VTAMVGDGVNDAPALAQADVGIAIGAGTDV 236
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 477 KNLSVYIGDSVGDLLCLLEADIGIVIGSSSSL 508
K + ++GD + D L +AD+GI +GS S +
Sbjct: 204 KEVVAFVGDGINDAPALAQADLGIAVGSGSDV 235
>pdb|2F2G|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis
Thaliana At3g16990
pdb|2F2G|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis
Thaliana At3g16990
pdb|2Q4X|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g16990
pdb|2Q4X|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g16990
Length = 221
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 21 WIKFKRESVF--AMYSPFTVCLASGNLKLETFRHYIAQDFHFLKAF 64
WI K S++ A F V + G++ L +FR ++ QD+ F++ F
Sbjct: 10 WID-KHRSIYTAATRHAFVVSIRDGSVDLSSFRTWLGQDYLFVRRF 54
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 458 PIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSL 508
P +K + +KY ++ +GD V D L +AD+GI IG+ + +
Sbjct: 192 PHEKAEKVKEVQQKY------VTAMVGDGVNDAPALAQADVGIAIGAGTDV 236
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 445 SISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGS 504
SI E+IEK + + K +RK++ GD V D L +ADIGI +
Sbjct: 548 SIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIGIAVAD 607
Query: 505 SSSLRRVGSQFGVTFIPLYPGL 526
++ R S +T PGL
Sbjct: 608 ATDAARGASDIVLT----EPGL 625
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 477 KNLSVYIGDSVGDLLCLLEADIGIVIGSSSSL 508
K + ++GD + D L +AD+GI +GS S +
Sbjct: 224 KEVVAFVGDGINDAPALAQADLGIAVGSGSDV 255
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 477 KNLSVYIGDSVGDLLCLLEADIGIVIGSSSSL 508
K + ++GD + D L +AD+GI +GS S +
Sbjct: 224 KEVVAFVGDGINDAPALAQADLGIAVGSGSDV 255
>pdb|3P96|A Chain A, Crystal Structure Of Phosphoserine Phosphatase Serb From
Mycobacterium Avium, Native Form
Length = 415
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 435 VHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLL 494
V ANE + TG ++ + K A ++ G +V +GD D+ L
Sbjct: 298 VAANELEIVDGTLTGRVVGPIIDRAGKATALREFAQRAGVPMAQ-TVAVGDGANDIDMLA 356
Query: 495 EADIGIVIGSSSSLRRV 511
A +GI + +LR V
Sbjct: 357 AAGLGIAFNAKPALREV 373
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 477 KNLSVYIGDSVGDLLCLLEADIGIVIGSSSSL 508
K + ++GD + D L +AD+GI +GS S +
Sbjct: 596 KEVVAFVGDGINDAPALAQADLGIAVGSGSDV 627
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 477 KNLSVYIGDSVGDLLCLLEADIGIVIGSSSSL 508
K + ++GD + D L +AD+GI +GS S +
Sbjct: 518 KEVVAFVGDGINDAPALAQADLGIAVGSGSDV 549
>pdb|3N28|A Chain A, Crystal Structure Of Probable Phosphoserine Phosphatase
From Vibrio Cholerae, Unliganded Form
Length = 335
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 16/106 (15%)
Query: 448 TGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGI------- 500
TG+++ +V S K ++Y + N +V +GD DL+ + A +G+
Sbjct: 233 TGQVLGEVVSAQTKADILLTLAQQYDVEIHN-TVAVGDGANDLVMMAAAGLGVAYHAKPK 291
Query: 501 VIGSSSSLRRVGSQFGVTFIPLYPGLVKKQKEYTEGSSSNWKEKSG 546
V + + R GV I L LV +QK +WK K G
Sbjct: 292 VEAKAQTAVRFAGLGGVVCI-LSAALVAQQK-------LSWKSKEG 329
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 29.3 bits (64), Expect = 5.5, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 477 KNLSVYIGDSVGDLLCLLEADIGIVIGS 504
K + ++GD + D L +AD+GI +GS
Sbjct: 83 KEVVAFVGDGINDAPALAQADLGIAVGS 110
>pdb|3VB2|A Chain A, Crystal Structure Of The Reduced Form Of Marr From E.coli
pdb|3VB2|B Chain B, Crystal Structure Of The Reduced Form Of Marr From E.coli
Length = 144
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 145 TPFEKTKVAAYTLGAMSPCMRLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASAL 204
TP E KV + LGA++ + G L N N+ K ++ S Q+ L
Sbjct: 56 TPVELKKVLSVDLGALTRMLDRLVSKG-WVERLPNPNDKRGVLVKLTTGGAAISEQSHQL 114
Query: 205 QNEDLLDKLSVSLTGEELDIIEKLYHQAM 233
+DL +L+ +LT +E+ +E L + +
Sbjct: 115 VGQDLHQELTKNLTADEVATLEYLLKKVL 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,120,186
Number of Sequences: 62578
Number of extensions: 647135
Number of successful extensions: 1799
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1761
Number of HSP's gapped (non-prelim): 41
length of query: 564
length of database: 14,973,337
effective HSP length: 104
effective length of query: 460
effective length of database: 8,465,225
effective search space: 3894003500
effective search space used: 3894003500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)