Query 008479
Match_columns 564
No_of_seqs 328 out of 2191
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 12:41:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008479.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008479hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0819 TenA Putative transcri 100.0 4.5E-47 9.7E-52 366.6 24.9 210 14-243 1-214 (218)
2 PRK14713 multifunctional hydro 100.0 1.6E-42 3.4E-47 381.9 26.2 214 10-247 314-528 (530)
3 PRK09517 multifunctional thiam 100.0 1.6E-41 3.4E-46 386.8 25.5 216 6-247 536-752 (755)
4 PTZ00347 phosphomethylpyrimidi 100.0 3.5E-41 7.5E-46 369.8 26.6 234 10-273 7-242 (504)
5 PF03070 TENA_THI-4: TENA/THI- 100.0 1E-40 2.3E-45 325.6 18.8 203 21-243 1-207 (210)
6 TIGR01544 HAD-SF-IE haloacid d 100.0 4.1E-28 9E-33 242.6 17.3 228 261-520 20-262 (277)
7 COG4359 Uncharacterized conser 99.9 4.7E-25 1E-29 201.2 15.2 205 262-533 2-214 (220)
8 KOG2598 Phosphomethylpyrimidin 99.9 2.7E-24 5.9E-29 218.6 20.7 208 13-243 308-519 (523)
9 COG0560 SerB Phosphoserine pho 99.9 2.1E-24 4.5E-29 210.4 16.0 199 261-519 3-202 (212)
10 TIGR03333 salvage_mtnX 2-hydro 99.9 7.7E-23 1.7E-27 200.4 18.7 193 265-524 1-200 (214)
11 PRK09552 mtnX 2-hydroxy-3-keto 99.9 5.5E-22 1.2E-26 195.1 19.1 196 262-524 2-204 (219)
12 PRK11133 serB phosphoserine ph 99.9 4.6E-22 1E-26 205.4 16.7 192 261-512 108-299 (322)
13 PF05822 UMPH-1: Pyrimidine 5' 99.9 2.4E-22 5.1E-27 196.4 11.8 200 307-520 15-230 (246)
14 PF06888 Put_Phosphatase: Puta 99.9 1.9E-21 4.1E-26 190.7 17.1 130 372-505 56-198 (234)
15 KOG3128 Uncharacterized conser 99.9 3.5E-22 7.6E-27 190.9 9.7 228 261-520 36-279 (298)
16 TIGR01488 HAD-SF-IB Haloacid D 99.8 1.7E-20 3.6E-25 177.5 13.4 121 369-496 53-177 (177)
17 TIGR01545 YfhB_g-proteo haloac 99.8 1.6E-19 3.4E-24 176.3 18.2 132 368-510 67-208 (210)
18 KOG1615 Phosphoserine phosphat 99.8 2.6E-20 5.6E-25 171.9 11.2 176 262-498 15-194 (227)
19 TIGR00338 serB phosphoserine p 99.8 1.4E-19 3E-24 177.6 16.2 137 370-513 68-204 (219)
20 TIGR02137 HSK-PSP phosphoserin 99.8 1.6E-19 3.4E-24 175.2 14.8 130 372-516 53-183 (203)
21 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.8 4.6E-19 9.9E-24 171.6 16.9 133 368-507 61-201 (202)
22 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.8 2.1E-17 4.6E-22 159.4 18.3 133 373-513 66-199 (201)
23 TIGR01489 DKMTPPase-SF 2,3-dik 99.8 2E-17 4.3E-22 157.8 17.2 122 372-503 57-186 (188)
24 KOG3120 Predicted haloacid deh 99.7 1.5E-17 3.2E-22 156.7 13.3 185 261-503 11-209 (256)
25 PRK11590 hypothetical protein; 99.7 3.5E-17 7.6E-22 160.0 16.6 129 371-510 71-209 (211)
26 PLN02954 phosphoserine phospha 99.7 8.9E-17 1.9E-21 158.2 17.1 181 261-502 10-194 (224)
27 PRK13582 thrH phosphoserine ph 99.6 1.5E-14 3.3E-19 140.3 16.2 121 372-507 53-174 (205)
28 PF12710 HAD: haloacid dehalog 99.6 3.4E-15 7.3E-20 142.9 9.0 100 387-494 85-192 (192)
29 PLN02177 glycerol-3-phosphate 99.4 4.8E-12 1E-16 137.7 16.4 123 368-505 84-216 (497)
30 PRK08238 hypothetical protein; 99.2 3.2E-10 6.9E-15 123.4 14.0 116 385-523 70-185 (479)
31 PRK13222 phosphoglycolate phos 99.1 1.1E-08 2.4E-13 100.4 19.6 101 385-502 91-192 (226)
32 cd01427 HAD_like Haloacid deha 99.0 2.1E-09 4.5E-14 95.6 10.1 111 383-498 20-134 (139)
33 PRK13288 pyrophosphatase PpaX; 99.0 1.6E-08 3.5E-13 98.8 16.1 97 385-500 80-178 (214)
34 PRK10826 2-deoxyglucose-6-phos 99.0 1.5E-08 3.3E-13 99.6 15.4 103 384-503 89-191 (222)
35 TIGR01428 HAD_type_II 2-haloal 99.0 6.5E-08 1.4E-12 93.3 19.4 106 379-503 84-192 (198)
36 TIGR01449 PGP_bact 2-phosphogl 99.0 2.2E-08 4.7E-13 97.5 16.2 98 385-501 83-182 (213)
37 TIGR03351 PhnX-like phosphonat 98.9 2.6E-08 5.6E-13 97.7 15.5 98 385-500 85-186 (220)
38 TIGR01454 AHBA_synth_RP 3-amin 98.9 5.8E-08 1.3E-12 94.2 16.2 99 384-501 72-172 (205)
39 PLN03243 haloacid dehalogenase 98.9 5.1E-08 1.1E-12 98.5 15.6 97 385-500 107-205 (260)
40 PRK13225 phosphoglycolate phos 98.9 4.1E-08 8.8E-13 99.9 15.0 96 384-499 139-234 (273)
41 PRK13226 phosphoglycolate phos 98.8 1.4E-07 3.1E-12 93.4 17.8 98 385-501 93-192 (229)
42 PLN02575 haloacid dehalogenase 98.8 9E-08 2E-12 100.8 15.9 98 385-501 214-313 (381)
43 TIGR01422 phosphonatase phosph 98.8 9E-08 1.9E-12 96.1 15.2 101 384-499 96-196 (253)
44 TIGR02253 CTE7 HAD superfamily 98.8 1.5E-07 3.1E-12 92.3 15.3 100 385-503 92-195 (221)
45 PRK13223 phosphoglycolate phos 98.8 2.3E-07 5.1E-12 94.3 16.9 98 385-499 99-196 (272)
46 PRK13478 phosphonoacetaldehyde 98.8 3.4E-07 7.4E-12 92.8 17.5 101 384-499 98-198 (267)
47 PLN02770 haloacid dehalogenase 98.7 1.6E-07 3.5E-12 94.1 14.5 98 385-501 106-205 (248)
48 PRK11587 putative phosphatase; 98.7 3.8E-07 8.3E-12 89.5 16.7 101 384-503 80-182 (218)
49 TIGR02009 PGMB-YQAB-SF beta-ph 98.7 3.6E-07 7.7E-12 86.8 15.5 95 385-500 86-182 (185)
50 TIGR02252 DREG-2 REG-2-like, H 98.7 1.2E-06 2.5E-11 84.8 19.1 94 386-499 104-200 (203)
51 PF13419 HAD_2: Haloacid dehal 98.7 5E-07 1.1E-11 84.0 14.6 97 384-499 74-172 (176)
52 PRK09449 dUMP phosphatase; Pro 98.7 4.3E-07 9.4E-12 89.2 14.8 99 385-502 93-195 (224)
53 PRK14988 GMP/IMP nucleotidase; 98.7 6.4E-07 1.4E-11 88.5 15.8 99 383-500 89-189 (224)
54 TIGR01549 HAD-SF-IA-v1 haloaci 98.6 4.1E-07 8.8E-12 83.9 12.9 91 385-497 62-154 (154)
55 TIGR01990 bPGM beta-phosphoglu 98.6 7.4E-07 1.6E-11 84.6 14.1 96 385-499 85-180 (185)
56 PRK05157 pyrroloquinoline quin 98.6 7.4E-06 1.6E-10 80.9 20.9 204 10-245 8-229 (246)
57 PLN02940 riboflavin kinase 98.6 6.3E-07 1.4E-11 95.6 14.6 99 384-501 90-191 (382)
58 PRK09456 ?-D-glucose-1-phospha 98.6 1.8E-06 3.8E-11 83.5 16.3 109 386-513 83-195 (199)
59 COG0546 Gph Predicted phosphat 98.6 1.6E-06 3.5E-11 85.3 15.6 94 386-498 88-183 (220)
60 PLN02779 haloacid dehalogenase 98.5 7.8E-06 1.7E-10 83.8 20.0 103 386-503 143-245 (286)
61 TIGR02111 PQQ_syn_pqqC coenzym 98.5 8.1E-06 1.8E-10 79.9 18.6 185 31-246 19-223 (239)
62 COG5424 Pyrroloquinoline quino 98.5 1.4E-05 2.9E-10 77.3 19.8 186 31-243 24-225 (242)
63 PRK06698 bifunctional 5'-methy 98.5 2.1E-06 4.5E-11 94.0 15.0 96 385-500 328-423 (459)
64 TIGR01497 kdpB K+-transporting 98.5 5.4E-07 1.2E-11 101.6 10.1 109 387-527 446-554 (675)
65 TIGR02254 YjjG/YfnB HAD superf 98.4 8.9E-06 1.9E-10 79.6 17.0 98 385-502 95-197 (224)
66 TIGR01548 HAD-SF-IA-hyp1 haloa 98.4 6E-06 1.3E-10 79.6 15.5 91 388-496 107-197 (197)
67 PRK10563 6-phosphogluconate ph 98.4 6.2E-06 1.3E-10 80.9 15.8 99 385-502 86-184 (221)
68 PHA02597 30.2 hypothetical pro 98.4 4.3E-06 9.3E-11 80.6 13.9 101 384-503 71-173 (197)
69 TIGR01993 Pyr-5-nucltdase pyri 98.4 8E-06 1.7E-10 77.8 14.7 98 385-500 82-181 (184)
70 PLN02499 glycerol-3-phosphate 98.4 5.1E-06 1.1E-10 89.4 14.4 118 368-502 70-196 (498)
71 TIGR01509 HAD-SF-IA-v3 haloaci 98.4 9.6E-06 2.1E-10 76.6 14.8 92 386-499 84-179 (183)
72 PRK01122 potassium-transportin 98.4 1.4E-06 3E-11 98.6 10.3 94 387-508 445-538 (679)
73 TIGR01511 ATPase-IB1_Cu copper 98.4 1.6E-06 3.4E-11 97.2 10.5 95 385-508 403-497 (562)
74 TIGR01672 AphA HAD superfamily 98.4 5.2E-06 1.1E-10 82.4 13.0 90 386-498 113-205 (237)
75 PRK10725 fructose-1-P/6-phosph 98.4 6.4E-06 1.4E-10 78.5 13.1 94 385-499 86-181 (188)
76 PRK14010 potassium-transportin 98.3 2.2E-06 4.8E-11 96.8 9.9 109 387-527 441-549 (673)
77 TIGR02247 HAD-1A3-hyp Epoxide 98.2 1.5E-05 3.2E-10 77.6 13.0 104 385-509 92-202 (211)
78 PF00702 Hydrolase: haloacid d 98.2 2E-06 4.4E-11 83.2 6.8 89 385-497 125-215 (215)
79 COG2217 ZntA Cation transport 98.2 3.3E-06 7.2E-11 95.6 9.2 93 386-506 536-628 (713)
80 COG4030 Uncharacterized protei 98.2 1.3E-05 2.7E-10 76.8 11.4 120 372-498 67-227 (315)
81 PLN02919 haloacid dehalogenase 98.2 3.4E-05 7.3E-10 92.2 17.5 94 387-499 161-257 (1057)
82 TIGR01524 ATPase-IIIB_Mg magne 98.2 6.9E-06 1.5E-10 96.3 10.3 111 386-506 514-631 (867)
83 TIGR01670 YrbI-phosphatas 3-de 98.2 8E-06 1.7E-10 75.8 8.7 85 395-505 36-120 (154)
84 TIGR01512 ATPase-IB2_Cd heavy 98.1 6E-06 1.3E-10 92.0 9.1 91 385-503 360-451 (536)
85 PRK11009 aphA acid phosphatase 98.1 2.6E-05 5.5E-10 77.5 11.5 90 386-498 113-205 (237)
86 PRK15122 magnesium-transportin 98.1 1.1E-05 2.5E-10 94.8 9.9 113 386-508 549-668 (903)
87 PLN02811 hydrolase 98.1 4.3E-05 9.4E-10 75.1 12.5 102 384-502 75-182 (220)
88 PRK10517 magnesium-transportin 98.1 1.4E-05 3.1E-10 93.9 10.3 111 386-506 549-666 (902)
89 PRK11033 zntA zinc/cadmium/mer 98.1 1.2E-05 2.6E-10 92.9 9.3 93 385-507 566-658 (741)
90 TIGR01647 ATPase-IIIA_H plasma 98.0 1.2E-05 2.7E-10 92.9 9.2 110 386-506 441-563 (755)
91 TIGR02726 phenyl_P_delta pheny 98.0 1.8E-05 4E-10 74.5 8.3 90 397-512 44-134 (169)
92 PRK10748 flavin mononucleotide 98.0 0.00026 5.7E-09 70.5 16.4 91 385-500 111-204 (238)
93 TIGR01523 ATPase-IID_K-Na pota 98.0 1.8E-05 4E-10 94.4 9.3 109 386-503 645-771 (1053)
94 TIGR01525 ATPase-IB_hvy heavy 98.0 2.6E-05 5.5E-10 87.5 10.0 98 385-509 382-479 (556)
95 TIGR01517 ATPase-IIB_Ca plasma 98.0 2.9E-05 6.3E-10 92.1 10.7 108 386-503 578-694 (941)
96 PRK09484 3-deoxy-D-manno-octul 97.9 3.3E-05 7.2E-10 73.8 8.8 85 396-506 57-141 (183)
97 PRK10671 copA copper exporting 97.9 3.1E-05 6.8E-10 90.8 9.8 93 386-506 649-741 (834)
98 TIGR01522 ATPase-IIA2_Ca golgi 97.9 2.9E-05 6.2E-10 91.5 9.1 107 387-503 528-643 (884)
99 COG0637 Predicted phosphatase/ 97.9 0.00018 3.8E-09 70.9 13.2 100 383-502 82-184 (221)
100 TIGR01533 lipo_e_P4 5'-nucleot 97.9 0.00034 7.5E-09 70.6 15.3 116 385-524 116-234 (266)
101 TIGR00213 GmhB_yaeD D,D-heptos 97.9 8E-05 1.7E-09 70.6 10.0 109 385-500 24-146 (176)
102 KOG0207 Cation transport ATPas 97.8 6.6E-05 1.4E-09 84.8 10.1 93 386-506 722-814 (951)
103 TIGR01662 HAD-SF-IIIA HAD-supe 97.8 0.00019 4.1E-09 64.5 10.5 96 387-502 25-130 (132)
104 COG4087 Soluble P-type ATPase 97.8 7.9E-05 1.7E-09 65.6 7.0 90 387-503 30-119 (152)
105 PRK05446 imidazole glycerol-ph 97.7 0.00013 2.9E-09 76.5 9.8 104 384-502 27-147 (354)
106 TIGR01116 ATPase-IIA1_Ca sarco 97.7 0.00012 2.5E-09 86.8 10.3 109 386-506 536-659 (917)
107 smart00775 LNS2 LNS2 domain. T 97.7 0.00024 5.2E-09 66.2 10.3 103 389-498 29-140 (157)
108 TIGR01656 Histidinol-ppas hist 97.7 0.00019 4.1E-09 66.0 9.3 104 386-502 26-144 (147)
109 TIGR01493 HAD-SF-IA-v2 Haloaci 97.7 0.00014 3E-09 68.5 8.6 89 383-495 86-174 (175)
110 PRK10530 pyridoxal phosphate ( 97.7 0.00016 3.5E-09 73.0 8.8 54 457-511 196-250 (272)
111 PRK10513 sugar phosphate phosp 97.6 5.8E-05 1.2E-09 76.4 4.9 56 456-512 192-248 (270)
112 TIGR01261 hisB_Nterm histidino 97.6 0.00025 5.4E-09 66.4 8.6 104 386-503 28-147 (161)
113 PRK10976 putative hydrolase; P 97.6 6.7E-05 1.5E-09 75.8 5.0 57 455-512 185-242 (266)
114 PRK12702 mannosyl-3-phosphogly 97.5 0.00057 1.2E-08 69.3 10.7 126 369-504 119-253 (302)
115 COG0474 MgtA Cation transport 97.5 0.00019 4.2E-09 84.7 8.3 109 386-504 546-665 (917)
116 TIGR01106 ATPase-IIC_X-K sodiu 97.5 0.0002 4.4E-09 85.4 8.4 109 386-503 567-709 (997)
117 PRK15126 thiamin pyrimidine py 97.5 0.00011 2.3E-09 74.6 5.2 78 456-536 184-264 (272)
118 COG0561 Cof Predicted hydrolas 97.5 0.00015 3.3E-09 73.1 5.8 58 455-513 184-242 (264)
119 PF08282 Hydrolase_3: haloacid 97.5 0.00015 3.2E-09 71.5 5.6 57 456-513 182-239 (254)
120 KOG0202 Ca2+ transporting ATPa 97.5 0.0004 8.7E-09 78.0 9.3 107 386-506 583-707 (972)
121 PRK08942 D,D-heptose 1,7-bisph 97.5 0.00064 1.4E-08 64.6 9.3 103 386-501 28-144 (181)
122 TIGR01494 ATPase_P-type ATPase 97.5 0.00031 6.8E-09 77.7 8.3 87 386-503 346-432 (499)
123 TIGR01657 P-ATPase-V P-type AT 97.4 0.00046 1E-08 82.9 9.1 112 385-505 654-829 (1054)
124 TIGR01482 SPP-subfamily Sucros 97.3 0.0002 4.3E-09 70.2 4.4 55 457-512 146-201 (225)
125 TIGR01487 SPP-like sucrose-pho 97.3 0.00023 5.1E-09 69.5 4.4 56 456-512 143-199 (215)
126 PRK01158 phosphoglycolate phos 97.3 0.00026 5.7E-09 69.7 4.8 56 456-512 153-209 (230)
127 COG1011 Predicted hydrolase (H 97.3 0.014 3E-07 57.1 16.7 99 385-505 97-201 (229)
128 PLN02887 hydrolase family prot 97.3 0.00027 5.8E-09 79.0 4.8 57 455-512 502-559 (580)
129 smart00577 CPDc catalytic doma 97.3 0.0003 6.6E-09 64.8 4.5 93 385-497 43-135 (148)
130 TIGR01691 enolase-ppase 2,3-di 97.2 0.0016 3.4E-08 64.2 9.3 100 385-501 93-193 (220)
131 PRK06769 hypothetical protein; 97.2 0.002 4.3E-08 61.0 9.1 101 386-502 27-136 (173)
132 CHL00168 pbsA heme oxygenase; 97.2 0.094 2E-06 52.1 21.1 195 15-243 4-207 (238)
133 PRK03669 mannosyl-3-phosphogly 97.2 0.00038 8.2E-09 70.7 4.4 47 456-503 183-232 (271)
134 TIGR01664 DNA-3'-Pase DNA 3'-p 97.1 0.0022 4.8E-08 60.3 9.1 93 388-499 43-157 (166)
135 TIGR02471 sucr_syn_bact_C sucr 97.1 0.00053 1.2E-08 68.0 5.0 58 456-514 155-213 (236)
136 PF08235 LNS2: LNS2 (Lipin/Ned 97.1 0.002 4.2E-08 59.7 8.1 106 387-498 27-140 (157)
137 TIGR01685 MDP-1 magnesium-depe 97.1 0.0017 3.7E-08 61.5 7.9 110 384-503 42-156 (174)
138 TIGR01486 HAD-SF-IIB-MPGP mann 97.1 0.00058 1.3E-08 68.7 4.5 49 457-505 173-222 (256)
139 TIGR01668 YqeG_hyp_ppase HAD s 97.0 0.0035 7.7E-08 59.1 9.5 94 385-503 41-136 (170)
140 TIGR02463 MPGP_rel mannosyl-3- 97.0 0.0008 1.7E-08 65.9 5.0 45 457-502 176-220 (221)
141 COG2216 KdpB High-affinity K+ 96.9 0.0017 3.8E-08 69.4 6.9 109 387-527 447-555 (681)
142 KOG3085 Predicted hydrolase (H 96.9 0.016 3.4E-07 57.4 13.2 101 385-505 111-215 (237)
143 TIGR00099 Cof-subfamily Cof su 96.9 0.001 2.2E-08 66.8 4.5 56 456-512 184-240 (256)
144 TIGR01681 HAD-SF-IIIC HAD-supe 96.8 0.0034 7.3E-08 56.3 7.1 93 387-494 29-125 (128)
145 PLN02382 probable sucrose-phos 96.8 0.0016 3.5E-08 70.2 5.7 57 456-513 171-232 (413)
146 TIGR01652 ATPase-Plipid phosph 96.8 0.0044 9.5E-08 74.7 10.0 112 386-505 630-796 (1057)
147 PRK00192 mannosyl-3-phosphogly 96.8 0.0014 3E-08 66.6 4.7 51 457-509 188-240 (273)
148 PLN03190 aminophospholipid tra 96.8 0.0041 8.9E-08 75.2 9.2 46 456-505 854-899 (1178)
149 PF05116 S6PP: Sucrose-6F-phos 96.7 0.0032 7E-08 63.1 6.9 75 420-505 135-209 (247)
150 TIGR02461 osmo_MPG_phos mannos 96.7 0.0016 3.5E-08 64.4 4.6 47 457-503 178-225 (225)
151 TIGR01485 SPP_plant-cyano sucr 96.7 0.0067 1.4E-07 60.7 9.2 56 457-513 164-221 (249)
152 cd00232 HemeO Heme oxygenase c 96.7 0.33 7.3E-06 46.8 20.1 187 15-237 1-196 (203)
153 PHA02530 pseT polynucleotide k 96.5 0.0061 1.3E-07 62.7 7.5 106 386-502 186-294 (300)
154 COG1778 Low specificity phosph 96.5 0.0062 1.3E-07 55.7 6.3 95 387-509 37-132 (170)
155 PF06941 NT5C: 5' nucleotidase 96.5 0.025 5.5E-07 54.2 10.9 29 384-415 70-98 (191)
156 KOG0204 Calcium transporting A 96.4 0.013 2.8E-07 66.4 9.0 125 386-524 646-782 (1034)
157 TIGR01484 HAD-SF-IIB HAD-super 96.1 0.0052 1.1E-07 59.3 3.7 46 456-502 159-204 (204)
158 PF11019 DUF2608: Protein of u 96.0 0.08 1.7E-06 53.3 12.0 113 379-496 73-197 (252)
159 COG0241 HisB Histidinol phosph 96.0 0.052 1.1E-06 51.5 9.8 104 386-503 30-149 (181)
160 PRK14502 bifunctional mannosyl 95.9 0.0086 1.9E-07 67.4 5.0 48 457-505 610-659 (694)
161 PRK10187 trehalose-6-phosphate 95.8 0.0084 1.8E-07 60.8 4.0 49 457-506 171-223 (266)
162 TIGR01686 FkbH FkbH-like domai 95.7 0.063 1.4E-06 55.9 10.1 104 388-513 32-140 (320)
163 PF03767 Acid_phosphat_B: HAD 95.5 0.066 1.4E-06 53.1 8.9 91 387-492 115-207 (229)
164 PTZ00174 phosphomannomutase; P 95.4 0.02 4.3E-07 57.3 4.8 55 456-515 184-244 (247)
165 PF12981 DUF3865: Domain of Un 95.2 0.19 4.1E-06 48.3 10.5 202 16-242 4-225 (231)
166 KOG0210 P-type ATPase [Inorgan 95.1 0.046 1E-06 60.6 6.8 99 386-505 710-809 (1051)
167 KOG2914 Predicted haloacid-hal 94.9 0.99 2.1E-05 44.4 14.8 107 382-505 87-197 (222)
168 KOG3109 Haloacid dehalogenase- 94.8 0.98 2.1E-05 43.9 14.1 113 375-503 82-205 (244)
169 TIGR01459 HAD-SF-IIA-hyp4 HAD- 94.8 0.17 3.7E-06 50.4 9.6 87 385-495 22-113 (242)
170 TIGR01663 PNK-3'Pase polynucle 94.6 0.22 4.8E-06 55.3 10.8 116 388-523 198-329 (526)
171 TIGR01675 plant-AP plant acid 94.4 0.57 1.2E-05 46.3 12.0 90 385-492 118-211 (229)
172 TIGR02251 HIF-SF_euk Dullard-l 94.4 0.021 4.6E-07 53.4 1.9 94 385-498 40-133 (162)
173 COG2503 Predicted secreted aci 94.3 0.24 5.1E-06 48.8 8.8 114 385-524 120-238 (274)
174 PLN02423 phosphomannomutase 94.2 0.064 1.4E-06 53.7 5.1 54 455-514 184-242 (245)
175 PF01126 Heme_oxygenase: Heme 93.6 4.6 0.0001 38.9 16.6 107 14-131 1-112 (205)
176 KOG0203 Na+/K+ ATPase, alpha s 93.0 0.16 3.4E-06 57.9 5.8 111 387-506 590-735 (1019)
177 TIGR00685 T6PP trehalose-phosp 92.7 0.14 3E-06 51.1 4.5 39 457-496 164-202 (244)
178 COG5398 Heme oxygenase [Inorga 92.2 12 0.00025 36.3 16.7 175 32-240 19-201 (238)
179 KOG0209 P-type ATPase [Inorgan 92.1 0.5 1.1E-05 53.8 8.2 112 385-505 673-834 (1160)
180 COG3700 AphA Acid phosphatase 91.7 0.8 1.7E-05 43.0 7.7 88 392-502 119-210 (237)
181 KOG0206 P-type ATPase [General 91.7 0.13 2.8E-06 61.4 3.2 45 458-506 779-823 (1151)
182 PF12689 Acid_PPase: Acid Phos 91.5 1.5 3.2E-05 41.4 9.6 105 381-498 39-145 (169)
183 PLN02580 trehalose-phosphatase 91.4 0.25 5.3E-06 52.6 4.8 47 457-503 298-351 (384)
184 TIGR01680 Veg_Stor_Prot vegeta 91.1 2.5 5.5E-05 42.8 11.3 91 385-491 143-236 (275)
185 PF13242 Hydrolase_like: HAD-h 91.0 0.51 1.1E-05 37.8 5.2 42 462-504 7-50 (75)
186 PRK14501 putative bifunctional 89.5 0.3 6.5E-06 56.8 3.7 48 456-506 653-703 (726)
187 COG2179 Predicted hydrolase of 89.1 3.8 8.1E-05 38.3 9.7 88 385-498 44-132 (175)
188 TIGR01684 viral_ppase viral ph 87.7 1.1 2.4E-05 45.7 6.0 51 385-439 143-196 (301)
189 TIGR02244 HAD-IG-Ncltidse HAD 86.8 3.2 6.9E-05 43.6 8.9 110 385-503 182-323 (343)
190 PHA03398 viral phosphatase sup 85.8 1.6 3.5E-05 44.6 5.9 51 385-439 145-198 (303)
191 TIGR01459 HAD-SF-IIA-hyp4 HAD- 84.1 1.4 3.1E-05 43.8 4.7 38 462-499 198-236 (242)
192 KOG0208 Cation transport ATPas 83.8 0.85 1.8E-05 53.0 3.2 44 457-505 837-880 (1140)
193 PLN02205 alpha,alpha-trehalose 82.9 1.1 2.5E-05 52.7 3.9 40 457-497 759-801 (854)
194 PF09949 DUF2183: Uncharacteri 82.7 4.7 0.0001 34.5 6.6 76 408-491 1-79 (100)
195 COG3769 Predicted hydrolase (H 81.0 1.4 3E-05 42.9 3.0 43 461-503 192-235 (274)
196 PLN02645 phosphoglycolate phos 80.1 8.3 0.00018 39.9 8.8 86 388-498 45-132 (311)
197 PLN02588 glycerol-3-phosphate 79.6 11 0.00024 41.4 9.7 124 368-504 108-239 (525)
198 TIGR02245 HAD_IIID1 HAD-superf 79.2 8.1 0.00017 37.3 7.7 40 386-430 44-83 (195)
199 PTZ00445 p36-lilke protein; Pr 78.0 14 0.0003 36.1 8.8 111 387-503 75-205 (219)
200 TIGR01458 HAD-SF-IIA-hyp3 HAD- 75.7 2.4 5.1E-05 42.7 3.1 43 460-503 180-224 (257)
201 PF08645 PNK3P: Polynucleotide 75.5 7.1 0.00015 36.3 6.0 85 388-489 30-130 (159)
202 TIGR00685 T6PP trehalose-phosp 72.7 2.5 5.4E-05 42.1 2.4 15 262-276 2-16 (244)
203 KOG2116 Protein involved in pl 72.2 2 4.4E-05 47.9 1.6 23 262-284 529-551 (738)
204 PLN03017 trehalose-phosphatase 72.0 4.5 9.7E-05 42.9 4.2 47 457-503 280-333 (366)
205 KOG0205 Plasma membrane H+-tra 71.4 8.1 0.00017 43.4 6.0 109 387-505 492-612 (942)
206 COG5083 SMP2 Uncharacterized p 68.8 3.7 8E-05 43.8 2.6 26 262-287 374-399 (580)
207 PRK14502 bifunctional mannosyl 68.3 27 0.00059 40.0 9.5 17 262-278 415-431 (694)
208 PF03031 NIF: NLI interacting 68.1 5.3 0.00011 36.7 3.4 40 385-429 34-73 (159)
209 PF13344 Hydrolase_6: Haloacid 67.5 12 0.00025 32.0 5.1 42 387-431 14-57 (101)
210 PLN02151 trehalose-phosphatase 66.9 6.6 0.00014 41.5 4.1 47 457-503 266-319 (354)
211 TIGR02250 FCP1_euk FCP1-like p 63.4 8.4 0.00018 35.7 3.7 41 385-430 56-96 (156)
212 PRK10444 UMP phosphatase; Prov 63.4 12 0.00025 37.5 5.0 46 457-503 172-219 (248)
213 PRK10187 trehalose-6-phosphate 62.0 5.8 0.00013 40.1 2.6 15 262-276 13-27 (266)
214 PLN02580 trehalose-phosphatase 61.5 4.2 9.1E-05 43.4 1.5 16 261-276 117-132 (384)
215 COG1877 OtsB Trehalose-6-phosp 58.8 5.1 0.00011 40.6 1.5 40 457-497 179-218 (266)
216 PRK09484 3-deoxy-D-manno-octul 58.2 5.2 0.00011 38.0 1.4 17 261-277 19-35 (183)
217 PLN02151 trehalose-phosphatase 57.5 5.6 0.00012 42.0 1.6 16 261-276 96-111 (354)
218 COG2099 CobK Precorrin-6x redu 57.4 34 0.00074 34.3 6.9 77 455-561 48-124 (257)
219 PLN03017 trehalose-phosphatase 57.1 5.8 0.00012 42.1 1.6 15 261-275 109-123 (366)
220 TIGR01457 HAD-SF-IIA-hyp2 HAD- 55.5 20 0.00043 35.8 5.1 42 460-502 179-222 (249)
221 TIGR01460 HAD-SF-IIA Haloacid 55.2 17 0.00037 35.9 4.6 41 458-499 187-229 (236)
222 COG4229 Predicted enolase-phos 54.7 63 0.0014 30.8 7.7 96 385-498 101-198 (229)
223 PLN02423 phosphomannomutase 54.4 7.3 0.00016 38.8 1.8 18 261-278 5-22 (245)
224 COG1458 Predicted DNA-binding 53.1 10 0.00023 36.1 2.4 41 483-523 158-200 (221)
225 PLN02645 phosphoglycolate phos 52.2 20 0.00043 37.1 4.7 41 461-502 232-274 (311)
226 TIGR01485 SPP_plant-cyano sucr 52.0 7.5 0.00016 38.6 1.4 14 263-276 1-14 (249)
227 COG4850 Uncharacterized conser 51.7 45 0.00098 34.6 6.8 98 385-494 194-295 (373)
228 TIGR02468 sucrsPsyn_pln sucros 51.5 33 0.00071 41.4 6.7 76 418-503 923-1001(1050)
229 PF09419 PGP_phosphatase: Mito 51.2 88 0.0019 29.4 8.3 98 387-503 59-164 (168)
230 PF05116 S6PP: Sucrose-6F-phos 51.0 7.7 0.00017 38.8 1.3 13 263-275 2-14 (247)
231 PRK14501 putative bifunctional 50.6 27 0.00058 40.7 5.9 17 261-277 490-506 (726)
232 PF14518 Haem_oxygenas_2: Iron 49.5 64 0.0014 27.3 6.7 63 96-176 20-90 (106)
233 PRK07878 molybdopterin biosynt 48.8 2.3E+02 0.005 30.4 12.3 136 374-520 15-161 (392)
234 TIGR01452 PGP_euk phosphoglyco 48.1 23 0.00051 35.9 4.3 40 462-502 205-246 (279)
235 PF00899 ThiF: ThiF family; I 47.7 1.5E+02 0.0032 26.3 9.1 112 407-522 3-123 (135)
236 PRK08762 molybdopterin biosynt 47.0 2.3E+02 0.005 30.1 11.9 111 407-521 136-255 (376)
237 PF02358 Trehalose_PPase: Treh 46.6 15 0.00032 36.3 2.5 48 457-504 162-217 (235)
238 PRK05690 molybdopterin biosynt 46.3 3.1E+02 0.0067 27.2 12.5 138 374-521 5-152 (245)
239 PF00702 Hydrolase: haloacid d 46.2 9.1 0.0002 36.4 1.0 14 265-278 3-16 (215)
240 PLN03063 alpha,alpha-trehalose 45.8 19 0.00041 42.4 3.6 41 456-496 674-720 (797)
241 PRK15174 Vi polysaccharide exp 45.5 1.3E+02 0.0028 34.7 10.3 119 393-524 468-592 (656)
242 TIGR02471 sucr_syn_bact_C sucr 45.0 8.5 0.00018 37.8 0.5 14 265-278 1-14 (236)
243 TIGR01689 EcbF-BcbF capsule bi 44.5 54 0.0012 29.3 5.5 50 387-439 24-87 (126)
244 TIGR01689 EcbF-BcbF capsule bi 44.3 11 0.00025 33.6 1.2 13 265-277 3-15 (126)
245 PLN02205 alpha,alpha-trehalose 41.4 55 0.0012 38.9 6.5 17 262-278 595-611 (854)
246 TIGR01664 DNA-3'-Pase DNA 3'-p 40.7 20 0.00044 33.4 2.4 23 255-277 5-27 (166)
247 PLN03064 alpha,alpha-trehalose 40.5 20 0.00044 42.7 2.8 40 456-495 764-809 (934)
248 TIGR01681 HAD-SF-IIIC HAD-supe 40.0 14 0.0003 32.8 1.1 14 265-278 2-15 (128)
249 COG4996 Predicted phosphatase 39.9 57 0.0012 29.4 4.8 44 383-430 37-80 (164)
250 PRK15052 D-tagatose-1,6-bispho 37.5 71 0.0015 34.3 6.0 85 393-489 2-91 (421)
251 TIGR01487 SPP-like sucrose-pho 37.3 63 0.0014 31.1 5.3 50 388-441 19-68 (215)
252 PF05761 5_nucleotid: 5' nucle 37.0 18 0.0004 39.5 1.6 52 372-427 167-219 (448)
253 TIGR02726 phenyl_P_delta pheny 36.5 20 0.00043 33.7 1.6 16 262-277 6-21 (169)
254 PF08745 UPF0278: UPF0278 fami 36.2 18 0.00038 34.9 1.1 41 483-523 151-193 (205)
255 PF08645 PNK3P: Polynucleotide 35.7 19 0.00041 33.5 1.2 13 265-277 2-14 (159)
256 TIGR01656 Histidinol-ppas hist 35.6 19 0.00042 32.6 1.3 13 265-277 2-14 (147)
257 TIGR01662 HAD-SF-IIIA HAD-supe 35.6 19 0.00042 31.6 1.3 12 265-276 2-13 (132)
258 PTZ00174 phosphomannomutase; P 35.4 20 0.00043 35.6 1.5 16 263-278 5-20 (247)
259 KOG4175 Tryptophan synthase al 35.1 3.6E+02 0.0077 26.3 9.5 132 390-524 3-156 (268)
260 PLN02382 probable sucrose-phos 34.7 25 0.00053 38.1 2.1 16 262-277 8-23 (413)
261 TIGR00099 Cof-subfamily Cof su 34.4 84 0.0018 31.0 5.8 49 388-440 17-65 (256)
262 PRK00192 mannosyl-3-phosphogly 33.8 88 0.0019 31.4 5.9 47 390-440 24-70 (273)
263 cd01483 E1_enzyme_family Super 33.4 3.4E+02 0.0075 24.0 9.6 99 421-523 14-121 (143)
264 TIGR02463 MPGP_rel mannosyl-3- 33.2 98 0.0021 29.7 6.0 45 392-440 21-66 (221)
265 TIGR03875 RNA_lig_partner RNA 33.0 35 0.00076 32.9 2.6 39 483-521 154-194 (206)
266 COG0678 AHP1 Peroxiredoxin [Po 32.5 1.1E+02 0.0024 28.3 5.5 39 389-431 58-97 (165)
267 TIGR01457 HAD-SF-IIA-hyp2 HAD- 32.1 79 0.0017 31.4 5.2 39 390-431 20-60 (249)
268 PRK15458 tagatose 6-phosphate 32.0 1.1E+02 0.0025 32.9 6.4 84 394-489 6-94 (426)
269 PF03332 PMM: Eukaryotic phosp 30.9 28 0.00061 34.1 1.6 53 457-513 159-216 (220)
270 TIGR02810 agaZ_gatZ D-tagatose 30.6 1.1E+02 0.0025 32.8 6.1 75 407-489 11-90 (420)
271 PRK05600 thiamine biosynthesis 30.4 6.2E+02 0.013 26.9 11.8 138 373-520 13-160 (370)
272 PF08013 Tagatose_6_P_K: Tagat 30.2 75 0.0016 34.2 4.7 85 392-488 4-93 (424)
273 TIGR01670 YrbI-phosphatas 3-de 30.0 26 0.00057 32.1 1.2 14 264-277 2-15 (154)
274 PRK04358 hypothetical protein; 29.9 39 0.00084 32.9 2.3 40 483-522 158-199 (217)
275 TIGR02461 osmo_MPG_phos mannos 28.3 1.2E+02 0.0026 29.7 5.6 48 391-442 19-66 (225)
276 TIGR01458 HAD-SF-IIA-hyp3 HAD- 28.1 1.1E+02 0.0024 30.5 5.5 41 388-431 22-64 (257)
277 TIGR01684 viral_ppase viral ph 28.0 33 0.00071 35.3 1.6 17 261-277 124-140 (301)
278 PRK07411 hypothetical protein; 27.0 8E+02 0.017 26.2 12.9 136 374-520 11-157 (390)
279 COG1778 Low specificity phosph 27.0 34 0.00074 31.8 1.3 15 263-277 8-22 (170)
280 cd04724 Tryptophan_synthase_al 26.4 3E+02 0.0064 27.3 8.1 103 391-515 117-225 (242)
281 PF12683 DUF3798: Protein of u 26.2 85 0.0018 31.8 4.0 78 462-546 76-199 (275)
282 PF02571 CbiJ: Precorrin-6x re 26.1 45 0.00097 33.5 2.2 56 492-561 69-125 (249)
283 PRK08942 D,D-heptose 1,7-bisph 26.1 37 0.00081 31.8 1.5 16 262-277 2-17 (181)
284 COG0561 Cof Predicted hydrolas 25.9 4E+02 0.0087 26.2 9.1 48 389-440 22-69 (264)
285 COG0794 GutQ Predicted sugar p 25.8 1.3E+02 0.0027 29.3 5.0 48 477-524 65-121 (202)
286 COG5663 Uncharacterized conser 25.7 24 0.00053 33.1 0.2 19 262-280 5-23 (194)
287 PF05974 DUF892: Domain of unk 25.7 5.3E+02 0.012 23.7 9.5 76 51-128 6-82 (159)
288 PRK15116 sulfur acceptor prote 25.1 6.9E+02 0.015 25.3 10.5 109 407-520 31-150 (268)
289 PRK10444 UMP phosphatase; Prov 25.0 1.3E+02 0.0028 30.1 5.2 41 387-430 17-59 (248)
290 PHA03398 viral phosphatase sup 25.0 35 0.00077 35.1 1.2 16 262-277 127-142 (303)
291 PRK01158 phosphoglycolate phos 24.6 1.5E+02 0.0033 28.4 5.7 47 390-440 23-69 (230)
292 KOG0323 TFIIF-interacting CTD 24.2 1E+02 0.0022 35.2 4.7 52 385-442 199-250 (635)
293 TIGR02355 moeB molybdopterin s 24.1 5.6E+02 0.012 25.3 9.6 110 407-521 25-144 (240)
294 PRK05597 molybdopterin biosynt 24.1 8.6E+02 0.019 25.6 12.2 108 407-520 29-147 (355)
295 PF08282 Hydrolase_3: haloacid 23.9 1.5E+02 0.0032 28.4 5.4 51 388-442 16-66 (254)
296 PRK08057 cobalt-precorrin-6x r 23.0 63 0.0014 32.4 2.5 56 492-561 68-124 (248)
297 TIGR01486 HAD-SF-IIB-MPGP mann 22.4 1.9E+02 0.0041 28.6 5.9 46 392-441 21-66 (256)
298 PF00875 DNA_photolyase: DNA p 22.2 1E+02 0.0023 28.2 3.8 43 391-439 54-96 (165)
299 PF00290 Trp_syntA: Tryptophan 22.1 8.2E+02 0.018 24.7 10.6 146 359-516 58-237 (259)
300 PRK15126 thiamin pyrimidine py 21.4 1.9E+02 0.0041 28.8 5.8 47 391-441 23-69 (272)
301 cd03769 SR_IS607_transposase_l 21.3 1.8E+02 0.0039 25.9 5.0 39 388-430 47-91 (134)
302 PRK10513 sugar phosphate phosp 21.1 4.8E+02 0.01 25.7 8.6 45 392-440 25-72 (270)
303 TIGR00213 GmhB_yaeD D,D-heptos 21.1 52 0.0011 30.7 1.5 13 264-276 2-14 (176)
304 PRK13689 hypothetical protein; 20.9 2.6E+02 0.0057 22.5 5.0 44 192-235 5-67 (75)
305 PF14336 DUF4392: Domain of un 20.7 3E+02 0.0065 28.3 7.0 38 390-430 63-100 (291)
306 TIGR01452 PGP_euk phosphoglyco 20.7 1.7E+02 0.0036 29.6 5.2 40 388-430 19-60 (279)
307 PRK10530 pyridoxal phosphate ( 20.6 2E+02 0.0044 28.4 5.7 45 393-441 26-70 (272)
308 PRK03669 mannosyl-3-phosphogly 20.2 2.1E+02 0.0045 28.6 5.7 44 393-440 30-74 (271)
309 PLN02591 tryptophan synthase 20.1 8.8E+02 0.019 24.3 10.3 26 478-504 189-219 (250)
No 1
>COG0819 TenA Putative transcription activator [Transcription]
Probab=100.00 E-value=4.5e-47 Score=366.63 Aligned_cols=210 Identities=30% Similarity=0.466 Sum_probs=195.5
Q ss_pred chHHHHHHHHhHHhHHHhhcChHHHHhhcCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-
Q 008479 14 EGLARRLWIKFKRESVFAMYSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQAYELAEECADDDDAKLSISELRKGVL- 92 (564)
Q Consensus 14 ~~~~~~lw~~~~~~~~~~~~hpFv~~la~GtL~~~~f~~Yl~QD~~YL~~~~r~~~~~~~~a~~~~~~~~l~~~~~~i~- 92 (564)
+.|++.||+..++.|...++||||++|++||||+++|++||+|||+||.+|+|+++++++|+++.+.+..+...+..+.
T Consensus 1 ~~f~~~L~~~~~~~W~~~~~H~FV~~L~~GtL~~~~F~~YL~QDy~YL~~~~ra~~~~~~ka~~~~~~~~~~~~~~~~~~ 80 (218)
T COG0819 1 MMFSEELIRAAQPIWQKYIEHPFVQELADGTLPREKFQFYLVQDYLYLVNFARALALLASKAPDLELMEELAKIIQFLVE 80 (218)
T ss_pred CchHHHHHHHhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999999999999888888877766
Q ss_pred HHHHHHHHHHHHhCCCcc--cccCCChhHHHHHHHHHHHhc-CCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHH
Q 008479 93 EELKMHDSFVKEWGTDLA--KMATVNSATVKYTEFLLATAS-GKVEGVKGPGKLATPFEKTKVAAYTLGAMSPCMRLYAF 169 (564)
Q Consensus 93 ~E~~~h~~~~~~~gi~~~--~~~~~~pa~~~Y~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~a~~l~Al~pC~~~Y~~ 169 (564)
.|+.+|+++++++||+.+ ...+++|+|.+||+||++++. |+ ++++++||+||+|+|++
T Consensus 81 ~E~~~h~~~~~~lgis~~~~~~~~~~~~~~aYt~ym~~~~~~g~-------------------~~~~~aAl~PC~~~Y~e 141 (218)
T COG0819 81 GEMELHERLAEELGISLDELLKTEPSPANKAYTRYLLDTAYSGS-------------------FAELLAALLPCLWGYAE 141 (218)
T ss_pred HHHHHHHHHHHHhCCCHHHHHhcCCCchHHHHHHHHHHHHhcCC-------------------HHHHHHHHHHHHHHHHH
Confidence 599999999999999974 257899999999999999996 54 36899999999999999
Q ss_pred HHHHHHhhccCCCCcccccccccccCChhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhhccC
Q 008479 170 LGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKLSVSLTGEELDIIEKLYHQAMKLEVEFFCAQ 243 (564)
Q Consensus 170 i~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~F~~~~~lE~~Fw~~a 243 (564)
||+++..... ..++++|++||++|+|++|.+.|.+++++||+++...+++++++|.++|.+++++|.+||+++
T Consensus 142 ig~~~~~~~~-~~~~~~Y~~Wi~~Y~s~ef~~~v~~~~~~ld~~~~~~~~~~~~~l~~iF~~ss~~E~~Fwd~a 214 (218)
T COG0819 142 IGKRLKAKPR-ASPNPPYQEWIDTYASEEFQEAVEELEALLDSLAENSSEEELEKLKQIFLTASRFELAFWDMA 214 (218)
T ss_pred HHHHHHhccc-cCCCCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988653 347899999999999999999999999999999999999999999999999999999999998
No 2
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=100.00 E-value=1.6e-42 Score=381.89 Aligned_cols=214 Identities=27% Similarity=0.435 Sum_probs=194.0
Q ss_pred CCCcchHHHHHHHHhHHhHHHhhcChHHHHhhcCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 008479 10 SPEEEGLARRLWIKFKRESVFAMYSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQAYELAEECADDDDAKLSISELRK 89 (564)
Q Consensus 10 ~~~~~~~~~~lw~~~~~~~~~~~~hpFv~~la~GtL~~~~f~~Yl~QD~~YL~~~~r~~~~~~~~a~~~~~~~~l~~~~~ 89 (564)
+.++++|+++||+...+.|..+++||||++|++||||.++|++||+||++||.+|+|+++++++|+++.+++.++...+.
T Consensus 314 ~~~~~~fs~~L~~~~~~~w~~~~~HpFv~~L~~GtL~~~~F~~Yl~QD~~yL~~~~r~~a~~~aka~~~e~~~~~~~~~~ 393 (530)
T PRK14713 314 VGPAGPFTAALWQASGPIREAIEDLPFVRALADGTLPEEAFEFYLAQDALYLNGYSRALARLAALAPDPAEQVFWAQSAQ 393 (530)
T ss_pred CCCCccHHHHHHHhhHHHHHHHHcChHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34667899999999999999999999999999999999999999999999999999999999999999999988877766
Q ss_pred HH-HHHHHHHHHHHHHhCCCcccccCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHH
Q 008479 90 GV-LEELKMHDSFVKEWGTDLAKMATVNSATVKYTEFLLATASGKVEGVKGPGKLATPFEKTKVAAYTLGAMSPCMRLYA 168 (564)
Q Consensus 90 ~i-~~E~~~h~~~~~~~gi~~~~~~~~~pa~~~Y~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~l~Al~pC~~~Y~ 168 (564)
.+ .+|+++|+.++++||++ .+++|+|++|++||++++..+. ++++++||+||+|+|.
T Consensus 394 ~~~~~E~~~h~~~~~~~~~~----~~~~p~~~aY~~~l~~~a~~~~------------------~~~~l~AllPC~~~Y~ 451 (530)
T PRK14713 394 ACLEVESELHRSWLGDRDAD----TAPSPVTLAYTDFLLARAAGGS------------------YAVGAAAVLPCFWLYA 451 (530)
T ss_pred HHHHHHHHHHHHHHHHhCcc----CCCChHHHHHHHHHHHHHhcCC------------------HHHHHHHHHhHHHHHH
Confidence 55 57999999999999873 6789999999999999986332 3689999999999999
Q ss_pred HHHHHHHhhccCCCCcccccccccccCChhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 008479 169 FLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKLSVSLTGEELDIIEKLYHQAMKLEVEFFCAQPLAQ 247 (564)
Q Consensus 169 ~i~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~F~~~~~lE~~Fw~~a~~~~ 247 (564)
+||+++..... ..++++|++||++|++++|.+.|.++++++|++++.++++++++|+++|+++|+||++|||++ +++
T Consensus 452 ~ig~~l~~~~~-~~~~~~Y~~WI~~Y~~~~f~~~v~~~~~~ld~~~~~~s~~~~~~~~~~F~~a~~~E~~Fwd~A-~~~ 528 (530)
T PRK14713 452 EVGAELHARAG-NPDDHPYAEWLQTYADPEFAAATRRAIAFVDRAFRAASPAERAAMARAFLTACRYELEFFDQA-RRR 528 (530)
T ss_pred HHHHHHHhhcc-CCCCChHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHH-hcc
Confidence 99999875311 235789999999999999999999999999999999999999999999999999999999999 554
No 3
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=1.6e-41 Score=386.82 Aligned_cols=216 Identities=24% Similarity=0.349 Sum_probs=194.5
Q ss_pred CCCCCCCcchHHHHHHHHhHHhHHHhhcChHHHHhhcCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 008479 6 PKSPSPEEEGLARRLWIKFKRESVFAMYSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQAYELAEECADDDDAKLSIS 85 (564)
Q Consensus 6 ~~~~~~~~~~~~~~lw~~~~~~~~~~~~hpFv~~la~GtL~~~~f~~Yl~QD~~YL~~~~r~~~~~~~~a~~~~~~~~l~ 85 (564)
++....++.+|+++||+...+.|...++||||++|++||||.++|++||+|||+||.+|+|+++++++|++|.+++.++.
T Consensus 536 ~~~~~~~~~~f~~~L~~~~~~~w~~~~~HPFv~~L~~GtL~~e~F~~YL~QD~~YL~~yar~~a~~~aka~~~~~~~~~~ 615 (755)
T PRK09517 536 PAPRIEPAGPFTRALWEASGDIIAEINDSDFIRMLGDGTLRRPEFDFYIDQDAQYLRQYSRALARLSSIAPDSHAQVEWA 615 (755)
T ss_pred cccccCCCCChHHHHHHHhHHHHHHHhcChHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 34445566789999999999999999999999999999999999999999999999999999999999999988877777
Q ss_pred HHHH-HHHHHHHHHHHHHHHhCCCcccccCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHH
Q 008479 86 ELRK-GVLEELKMHDSFVKEWGTDLAKMATVNSATVKYTEFLLATASGKVEGVKGPGKLATPFEKTKVAAYTLGAMSPCM 164 (564)
Q Consensus 86 ~~~~-~i~~E~~~h~~~~~~~gi~~~~~~~~~pa~~~Y~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~l~Al~pC~ 164 (564)
..+. .+.+|+++|+++++.+|+ +.+++|+|.+|++||++++..+. ++++++||+||+
T Consensus 616 ~~~~~~~~~E~~~h~~~~~~~~~----~~~~~p~~~aYt~~l~~~a~~g~------------------~~~~laAllPC~ 673 (755)
T PRK09517 616 QSAAECIVVEAELHRSYLSGKEA----PSAPSPVTMAYTDFLIARTYTED------------------YVVGVAAVLPCY 673 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCc----CCCCChHHHHHHHHHHHHHhcCC------------------HHHHHHHHHHHH
Confidence 6655 456799999999999986 35789999999999999986332 368999999999
Q ss_pred HHHHHHHHHHHhhccCCCCcccccccccccCChhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhhccCC
Q 008479 165 RLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKLSVSLTGEELDIIEKLYHQAMKLEVEFFCAQP 244 (564)
Q Consensus 165 ~~Y~~i~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~F~~~~~lE~~Fw~~a~ 244 (564)
|+|.+||+++.+.. .++++|++||++|++++|.++|.++++++|++++.++++++++|+++|+++|+||++||||+
T Consensus 674 w~Y~~ig~~l~~~~---~~~~~Y~~WI~~Y~~~~f~~~v~~~~~~ld~~~~~~s~~~~~~l~~~F~~a~~lE~~Fwd~A- 749 (755)
T PRK09517 674 WLYAEIGLMLAEQN---HDEHPYKDWLNTYSGEEFIAGTRAAIARVEKALENAGPEQRVDAARAFLSASVHEREFFDQA- 749 (755)
T ss_pred HHHHHHHHHHHhcc---CCCchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 99999999997632 25679999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 008479 245 LAQ 247 (564)
Q Consensus 245 ~~~ 247 (564)
+++
T Consensus 750 ~~~ 752 (755)
T PRK09517 750 TRH 752 (755)
T ss_pred Hhc
Confidence 554
No 4
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=3.5e-41 Score=369.80 Aligned_cols=234 Identities=30% Similarity=0.483 Sum_probs=196.6
Q ss_pred CCCcchHHHHHHHHhHHhHHHhhcChHHHHhhcCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 008479 10 SPEEEGLARRLWIKFKRESVFAMYSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQAYELAEECADDDDAKLSISELRK 89 (564)
Q Consensus 10 ~~~~~~~~~~lw~~~~~~~~~~~~hpFv~~la~GtL~~~~f~~Yl~QD~~YL~~~~r~~~~~~~~a~~~~~~~~l~~~~~ 89 (564)
+|++++|+++||++.++.|..+++||||++|++||||+++|++||+||++||.+|+|+++++++|+++.+++.++...+.
T Consensus 7 ~~~~~~fs~~L~~~~~~~~~~~~~HpFv~~l~~GtL~~~~F~~Yl~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~~~~ 86 (504)
T PTZ00347 7 EPVFGGLSEALWKENQDLAMMSLHLPFVQGLGDGTLDQNAFRTYIAQDTLYLNGYIRILSYCITKSDVTATGGGLLELLK 86 (504)
T ss_pred CCCCCCHHHHHHHhHHHHHHHHhCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999998888887776
Q ss_pred HHH-HHHHHHHHHHHHhCCCcccccCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHH
Q 008479 90 GVL-EELKMHDSFVKEWGTDLAKMATVNSATVKYTEFLLATASGKVEGVKGPGKLATPFEKTKVAAYTLGAMSPCMRLYA 168 (564)
Q Consensus 90 ~i~-~E~~~h~~~~~~~gi~~~~~~~~~pa~~~Y~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~l~Al~pC~~~Y~ 168 (564)
.+. +|..+|++++.. ....+++|+|++|++||++++..+.++ ++++++||+||+|+|.
T Consensus 87 ~~~~~e~~~h~~~~~~-----~~~~~~~p~~~aY~~~l~~~a~~g~~~----------------~~~~l~Al~pC~~~Y~ 145 (504)
T PTZ00347 87 GVLEELKNCHHHYIDN-----PDAAGPEAACRKYVDFLLASGNADTLG----------------PSVVIAAVIPCARLYA 145 (504)
T ss_pred HHHHHHHHHHHHHHhh-----hhccCCCHHHHHHHHHHHHHHhcCCcc----------------hHHHHHHHHHHHHHHH
Confidence 654 577899999632 134678999999999999999643321 2689999999999999
Q ss_pred HHHHHHHhhccCCCCcccccccccccCChhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 008479 169 FLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKLSVSLTGEELDIIEKLYHQAMKLEVEFFCAQPLAQP 248 (564)
Q Consensus 169 ~i~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~F~~~~~lE~~Fw~~a~~~~~ 248 (564)
+||+++..... ..++|+|++||++|++++|.+.+.++++++|+++. ++++++++++|+++|++|++||+++ +++.
T Consensus 146 ~ig~~l~~~~~-~~~~~~y~~Wi~~y~~~~f~~~~~~~~~~ld~~~~---~~~~~~~~~~F~~~~~~E~~Fw~~A-y~~~ 220 (504)
T PTZ00347 146 WVGQELTNEVE-LTESHPFRRWLLSYSDEPINTSVEQLESLLDKYIR---PGEFSEVAQAYRRAMELEYDFFDSF-GYCL 220 (504)
T ss_pred HHHHHHHhccC-CCCCChHHHHHHhcCCHHHHHHHHHHHHHHHHHhc---hhhHHHHHHHHHHHHHHHHHHhHhH-Hhhh
Confidence 99999876322 12578999999999999999999999999999974 4788899999999999999999999 6554
Q ss_pred cccccccCCCCCC-CCeEEeeccccc
Q 008479 249 TVVPLIKGHNPAG-DRLIIFSDFDLT 273 (564)
Q Consensus 249 ~~~p~~~~~~~~~-~~~lii~DFD~T 273 (564)
-||... |.. +..+.|.=.|-+
T Consensus 221 -~w~~~~---~~~~~~vLtIag~D~s 242 (504)
T PTZ00347 221 -GRPVEN---PMKIPTVLTVSGSDSG 242 (504)
T ss_pred -cccccC---CCCCCeEEEEeCcCCC
Confidence 377533 322 344555555544
No 5
>PF03070 TENA_THI-4: TENA/THI-4/PQQC family; InterPro: IPR004305 Proteins containing this domain are found in all the three major phyla of life: archaebacteria, eubacteria, and eukaryotes. In Bacillus subtilis, TENA is one of a number of proteins that enhance the expression of extracellular enzymes, such as alkaline protease, neutral protease and levansucrase []. The THI-4 protein, which is involved in thiamine biosynthesis, also contains this domain. The C-terminal part of these proteins consistently show significant sequence similarity to TENA proteins. This similarity was first noted with the Neurospora crassa THI-4 []. The exact molecular function of this domain is uncertain.; PDB: 2RD3_D 3RM5_B 1UDD_D 1Z72_B 3HML_A 3HLX_A 3HNH_A 3DDE_B 3OQL_A 2A6B_A ....
Probab=100.00 E-value=1e-40 Score=325.63 Aligned_cols=203 Identities=35% Similarity=0.556 Sum_probs=183.7
Q ss_pred HHHhHHhHHHhhcChHHHHhhcCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHH
Q 008479 21 WIKFKRESVFAMYSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQAYELAEECADDDDAK-LSISELRKGVLEELKMHD 99 (564)
Q Consensus 21 w~~~~~~~~~~~~hpFv~~la~GtL~~~~f~~Yl~QD~~YL~~~~r~~~~~~~~a~~~~~~-~~l~~~~~~i~~E~~~h~ 99 (564)
|++..+.|..+++||||++|++||||.++|++||+||++||.+|+|+++.+++++++.+.+ .++..+...+.+|+++|.
T Consensus 1 ~~~~~~~w~~~~~HPFv~~l~~GtL~~~~f~~Yl~QD~~yl~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 80 (210)
T PF03070_consen 1 HQKAEPIWEAILNHPFVQELADGTLPKEAFRYYLIQDYHYLKHFARALALLASKAPDPEEQRELLSRLIQEIEEELELHE 80 (210)
T ss_dssp SHHTHHHHHHHHTSHHHHHHHTTESEHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHCCHHHHHHhCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777799999999999999999999999999999999999999999999999987 555566667778999999
Q ss_pred HHHHHhCCCccc--ccCCChhHHHHHHHHHHHhc-CCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008479 100 SFVKEWGTDLAK--MATVNSATVKYTEFLLATAS-GKVEGVKGPGKLATPFEKTKVAAYTLGAMSPCMRLYAFLGKEFHA 176 (564)
Q Consensus 100 ~~~~~~gi~~~~--~~~~~pa~~~Y~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~a~~l~Al~pC~~~Y~~i~~~~~~ 176 (564)
.+++.+|++.++ ..+|+|+|++|++||++++. ++ ++++++||+||+|+|.++|+++..
T Consensus 81 ~~~~~~gi~~~~~~~~~~~p~~~~y~~~l~~~a~~~~-------------------~~~~l~al~pc~~~Y~~~~~~~~~ 141 (210)
T PF03070_consen 81 DFAEELGISREDLENIEPSPATRAYTDFLLSLAQTGS-------------------LAEGLAALLPCEWIYAEIGKRLAE 141 (210)
T ss_dssp HHHHHTTSHHHHHHHSTC-HHHHHHHHHHHHHHHHSS-------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHhhhhhhHHHHHHHHHHHHhccCC-------------------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999874 67899999999999999985 54 368999999999999999999987
Q ss_pred hccCCCCcccccccccccCChhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhhccC
Q 008479 177 LLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKLSVSLTGEELDIIEKLYHQAMKLEVEFFCAQ 243 (564)
Q Consensus 177 ~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~F~~~~~lE~~Fw~~a 243 (564)
... ..++++|++||+.|++++|.+.+.++.+++|+++...+++++++|+++|+++|++|++|||++
T Consensus 142 ~~~-~~~~~~y~~wi~~y~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~E~~Fwd~a 207 (210)
T PF03070_consen 142 KLR-APEDNPYQEWIDMYASEEFEAFVEWLEELLDELAAEASDEERERLEEIFRRSCELEYDFWDAA 207 (210)
T ss_dssp HCS-TTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc-CCCCccHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 643 347889999999999999999999999999999988889999999999999999999999998
No 6
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.96 E-value=4.1e-28 Score=242.55 Aligned_cols=228 Identities=18% Similarity=0.279 Sum_probs=183.8
Q ss_pred CCCeEEeeccccceecccchHHHHHHHHHhCCCCCCCCCcccccccCcccccccHhHHHHHHHHHHHHHHhhcCCCcccc
Q 008479 261 GDRLIIFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEEYEQCIESFMPSEKVE 340 (564)
Q Consensus 261 ~~~~lii~DFD~TiT~~DT~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~y~~~~~~~~~~~~p~~~~~ 340 (564)
+++++||+|||.|||+.-+ .++++.. +||++....+.+++.|.++..+++++|+|+|.++
T Consensus 20 ~~~lqvisDFD~Tlt~~~~--------~~g~~~~------------s~~~~~~~~~~~~~~~~~~~~~l~~~Y~PiE~d~ 79 (277)
T TIGR01544 20 AAKLQIISDFDYTLSRFSY--------EDGKRCP------------TCHGIFDNCKLLTDECRKKLLQLKEKYYPIEVDP 79 (277)
T ss_pred hhheEEeeccCccceeeec--------CCCCCCc------------chHhHHhhCCCCCHHHHHHHHHHHhhccceecCC
Confidence 4899999999999998632 1223332 4677777788899999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCHHHHHHHhh--cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCH
Q 008479 341 NFNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAGE--RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCG 418 (564)
Q Consensus 341 ~~~~~~~~~~l~~l~e~e~~s~~rv~~~~~f~Gi~~~~i~~~~~--~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~ 418 (564)
.++.+++.++ |.|||+++++.+.+. +++++++.++++ ++.++||+.+|++.|+++| +|++|+|+|+ .
T Consensus 80 ~~~~~eK~~~---m~eWw~k~~~l~~~~----~~~~e~i~~~v~~~~l~l~pG~~efl~~L~~~G---Ipv~IvS~G~-~ 148 (277)
T TIGR01544 80 VLTVEEKYPY---MVEWWTKSHGLLVQQ----AFPKAKIKEIVAESDVMLKDGYENFFDKLQQHS---IPVFIFSAGI-G 148 (277)
T ss_pred CCChHHhhhH---HHHHHHHHHHHHhcC----CCCHHHHHHHHhhcCCccCcCHHHHHHHHHHCC---CcEEEEeCCc-H
Confidence 9999999997 569999999999874 569999999997 8999999999999999999 9999999999 8
Q ss_pred HHHHHHHhhcCC--CceeEEeeceeec-CccccccccccCCCCCchHHHHHH-HHHHhC-CCCCccEEEEcCCccchhhh
Q 008479 419 DLIRASFSSAGL--NALNVHANEFSFK-ESISTGEIIEKVESPIDKVQAFNN-TLEKYG-TDRKNLSVYIGDSVGDLLCL 493 (564)
Q Consensus 419 ~~I~~~l~~~g~--~~~~I~aN~l~~~-~g~~tG~~~~~~~~g~~K~~~l~~-l~~~~~-~~~~~~viyiGDs~~Dl~~l 493 (564)
.+|+.+|++.|+ .++.|+||+|.|+ +|+++| +.++.+...+|.+.+.+ ..+..+ ...+.++|++|||.||+.|+
T Consensus 149 ~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG-~~~P~i~~~~K~~~v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma 227 (277)
T TIGR01544 149 NVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKG-FKGPLIHTFNKNHDVALRNTEYFNQLKDRSNIILLGDSQGDLRMA 227 (277)
T ss_pred HHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeC-CCCCcccccccHHHHHHHHHHHhCccCCcceEEEECcChhhhhHh
Confidence 999999999887 5679999999996 689999 56677777899876654 333332 12357899999999999997
Q ss_pred hhcC-------ccEEEc-CChhHHHHHHhhCCcee
Q 008479 494 LEAD-------IGIVIG-SSSSLRRVGSQFGVTFI 520 (564)
Q Consensus 494 ~~Ad-------~giv~~-~~~~L~~~~~~~gi~~~ 520 (564)
.-.. ||++-. ....|.+|.+.+.|-++
T Consensus 228 ~g~~~~~~~l~igfln~~~e~~l~~y~~~~Divl~ 262 (277)
T TIGR01544 228 DGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLV 262 (277)
T ss_pred cCCCcccceEEEEecccCHHHHHHHHHHhCCEEEE
Confidence 6641 122221 11457777777776444
No 7
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=99.93 E-value=4.7e-25 Score=201.21 Aligned_cols=205 Identities=19% Similarity=0.249 Sum_probs=150.2
Q ss_pred CCeEEeeccccceecccchHHHHHHHHHhCCCCCCCCCcccccccCcccccccHhHHHHHHHHHHHHHHhhcCCCccccC
Q 008479 262 DRLIIFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEEYEQCIESFMPSEKVEN 341 (564)
Q Consensus 262 ~~~lii~DFD~TiT~~DT~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~y~~~~~~~~~~~~p~~~~~~ 341 (564)
++.+|++|||||||.+|+...|..-. ...+|..+.+.++.+.
T Consensus 2 kk~vi~sDFDGTITl~Ds~~~itdtf-----------------------~~~e~k~l~~~vls~t--------------- 43 (220)
T COG4359 2 KKPVIFSDFDGTITLNDSNDYITDTF-----------------------GPGEWKALKDGVLSKT--------------- 43 (220)
T ss_pred CceEEEecCCCceEecchhHHHHhcc-----------------------CchHHHHHHHHHhhCc---------------
Confidence 57799999999999999998877633 3457776655443332
Q ss_pred CCHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCHHHHHHHhh-cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHH
Q 008479 342 FNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAGE-RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDL 420 (564)
Q Consensus 342 ~~~~~~~~~l~~l~e~e~~s~~rv~~~~~f~Gi~~~~i~~~~~-~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~ 420 (564)
++..+-. .+|..+ -+.+.+++.+.+. ++.++|||++|++++++++ +|++|||+|. ..|
T Consensus 44 iS~rd~~--------------g~mf~~---i~~s~~Eile~llk~i~Idp~fKef~e~ike~d---i~fiVvSsGm-~~f 102 (220)
T COG4359 44 ISFRDGF--------------GRMFGS---IHSSLEEILEFLLKDIKIDPGFKEFVEWIKEHD---IPFIVVSSGM-DPF 102 (220)
T ss_pred eeHHHHH--------------HHHHHh---cCCCHHHHHHHHHhhcccCccHHHHHHHHHHcC---CCEEEEeCCC-chH
Confidence 2222211 133221 1346777777655 6999999999999999999 9999999998 899
Q ss_pred HHHHHhhcC----CCceeEEeeceeecC-ccccccccccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhh
Q 008479 421 IRASFSSAG----LNALNVHANEFSFKE-SISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLE 495 (564)
Q Consensus 421 I~~~l~~~g----~~~~~I~aN~l~~~~-g~~tG~~~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~ 495 (564)
|+++++..+ +..++|++|+..+.. |-..-...+....|.||...++++.+. +..++|+|||++|+.+++.
T Consensus 103 I~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK~~vI~~l~e~-----~e~~fy~GDsvsDlsaakl 177 (220)
T COG4359 103 IYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDKSSVIHELSEP-----NESIFYCGDSVSDLSAAKL 177 (220)
T ss_pred HHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCcchhHHHhhcC-----CceEEEecCCcccccHhhh
Confidence 999998764 444566666666642 211101123467899999999999874 4679999999999999999
Q ss_pred cCccEEEcCChhHHHHHHhhCCceeecCc--hhHHhHHhh
Q 008479 496 ADIGIVIGSSSSLRRVGSQFGVTFIPLYP--GLVKKQKEY 533 (564)
Q Consensus 496 Ad~giv~~~~~~L~~~~~~~gi~~~p~~~--~~~~~~~~~ 533 (564)
+| ++| ++..|..+|++++++|++|.+ .+++.++.+
T Consensus 178 sD--llF-AK~~L~nyc~eqn~~f~~fe~F~eIlk~iekv 214 (220)
T COG4359 178 SD--LLF-AKDDLLNYCREQNLNFLEFETFYEILKEIEKV 214 (220)
T ss_pred hh--hHh-hHHHHHHHHHHcCCCCcccccHHHHHHHHHHH
Confidence 99 566 466899999999999999986 555544443
No 8
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=99.92 E-value=2.7e-24 Score=218.63 Aligned_cols=208 Identities=20% Similarity=0.322 Sum_probs=186.6
Q ss_pred cchHHHHHHHH--hHHhHHHhhcChHHHHhhcCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 008479 13 EEGLARRLWIK--FKRESVFAMYSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQAYELAEECADDDDAKLSISELRKG 90 (564)
Q Consensus 13 ~~~~~~~lw~~--~~~~~~~~~~hpFv~~la~GtL~~~~f~~Yl~QD~~YL~~~~r~~~~~~~~a~~~~~~~~l~~~~~~ 90 (564)
.+.|...|... ..+.|...++|+|+.+++.|||+...|..|+.|||+||-+|+|+++....+.+..++++.-......
T Consensus 308 ~g~f~~yl~~hpkv~p~W~s~inh~fv~~~~~Gtl~~~~fq~~l~qdy~ylIn~ara~~v~g~ks~~i~~ie~~~~iv~~ 387 (523)
T KOG2598|consen 308 PGSFFNYLINHPKVKPKWDSYINHEFVKQLADGTLERKKFQDYLEQDYLYLINYARAHGVAGSKSPTIEDIEKEAVIVQH 387 (523)
T ss_pred cHHHHHHHhhCcccChhHHHHhhHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCcHHHHHHHhHHHHH
Confidence 36788888764 3678888899999999999999999999999999999999999999999999999988777777778
Q ss_pred HHHHHHHHHHHHHHhCCCccc--ccCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHH
Q 008479 91 VLEELKMHDSFVKEWGTDLAK--MATVNSATVKYTEFLLATASGKVEGVKGPGKLATPFEKTKVAAYTLGAMSPCMRLYA 168 (564)
Q Consensus 91 i~~E~~~h~~~~~~~gi~~~~--~~~~~pa~~~Y~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~l~Al~pC~~~Y~ 168 (564)
+.+|+..|.++++.+|++..+ ..+++|++++|.+|+..+++++. | .++..|+.| |.
T Consensus 388 v~~e~~~h~~l~e~~Gv~~~d~~~~~~~pa~~Aysry~~d~~~~g~------------~------~~l~~a~~p----y~ 445 (523)
T KOG2598|consen 388 VREELVQHVRLREEYGVSDPDYLSCKKGPALRAYSRYINDTGRRGN------------W------QELVIALNP----YV 445 (523)
T ss_pred HHhhccchHHHHHHhCCCchhhhhcCccHHHHHHHHHhhhhhcccC------------h------hhhhhhhch----hh
Confidence 889999999999999999874 44569999999999999997443 2 467999999 88
Q ss_pred HHHHHHHhhccCCCCcccccccccccCChhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhhccC
Q 008479 169 FLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKLSVSLTGEELDIIEKLYHQAMKLEVEFFCAQ 243 (564)
Q Consensus 169 ~i~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~F~~~~~lE~~Fw~~a 243 (564)
.+..++..... +.++.+|.+|+++|++.++...++...+.++...+.+++++.+.+..+|.++|++|..||+.+
T Consensus 446 ~~l~~lk~~~~-as~g~vy~~w~e~~~~~~~~~ai~~g~~~l~~i~~~~~pe~~~~l~~i~~~~~~~Et~fw~t~ 519 (523)
T KOG2598|consen 446 FALDKLKDEIT-ASEGSVYVEWVETYSSSWYTSAIDEGERLLEHIVETLSPEKLQTLVTIFARVTEFETLFWTTA 519 (523)
T ss_pred HHHHHHHhhcc-cCCCCceeehhhhccchhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 88888877653 557899999999999999999999999999999999999999999999999999999999988
No 9
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.92 E-value=2.1e-24 Score=210.45 Aligned_cols=199 Identities=22% Similarity=0.207 Sum_probs=166.2
Q ss_pred CCCeEEeeccccceecccchHHHHHHHHHhCCCCCCCCCcccccccCcccccccHhHHHHHHHHHHHHHHhhcCCCcccc
Q 008479 261 GDRLIIFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEEYEQCIESFMPSEKVE 340 (564)
Q Consensus 261 ~~~~lii~DFD~TiT~~DT~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~y~~~~~~~~~~~~p~~~~~ 340 (564)
+.+.+++||||+|||...+++.+++... .......++...+..
T Consensus 3 ~~~~L~vFD~D~TLi~~~~~~~~~~~~g----------------------~~~~v~~~t~~~~~~--------------- 45 (212)
T COG0560 3 RMKKLAVFDLDGTLINAELIDELARGAG----------------------VGEEVLAITERAMRG--------------- 45 (212)
T ss_pred CccceEEEecccchhhHHHHHHHHHHhC----------------------CHHHHHHHHHHHhcc---------------
Confidence 4678999999999999888888877552 222333333322222
Q ss_pred CCCHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCHHHHHHHhhc-CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHH
Q 008479 341 NFNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAGER-LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGD 419 (564)
Q Consensus 341 ~~~~~~~~~~l~~l~e~e~~s~~rv~~~~~f~Gi~~~~i~~~~~~-i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~ 419 (564)
+.+|.+.+. .++ .+++|++.+.+.+..++ +.++||+.+++++++++| +.++|||+|+ ..
T Consensus 46 ------~~~~~~~~~-------~~v---~~l~g~~~~~v~~~~~~~~~l~~ga~elv~~lk~~G---~~v~iiSgg~-~~ 105 (212)
T COG0560 46 ------ELDFEESLR-------LRV---ALLKGLPVEVLEEVREEFLRLTPGAEELVAALKAAG---AKVVIISGGF-TF 105 (212)
T ss_pred ------cccHHHHHH-------HHH---HHhCCCCHHHHHHHHHhcCcCCccHHHHHHHHHHCC---CEEEEEcCCh-HH
Confidence 112222222 344 67899999999999999 999999999999999999 9999999999 79
Q ss_pred HHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCcc
Q 008479 420 LIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG 499 (564)
Q Consensus 420 ~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g 499 (564)
+++++.+..|+ ..++||.+..++|++||.+.++++.+.+|..+++++..+.+.+ ...+++||||.||++|+..||.|
T Consensus 106 lv~~ia~~lg~--d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~~~g~~-~~~~~a~gDs~nDlpml~~ag~~ 182 (212)
T COG0560 106 LVEPIAERLGI--DYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAAELGIP-LEETVAYGDSANDLPMLEAAGLP 182 (212)
T ss_pred HHHHHHHHhCC--chheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHHHcCCC-HHHeEEEcCchhhHHHHHhCCCC
Confidence 99999999886 7899999999988999999999999999999999999988764 47899999999999999999999
Q ss_pred EEEcCChhHHHHHHhhCCce
Q 008479 500 IVIGSSSSLRRVGSQFGVTF 519 (564)
Q Consensus 500 iv~~~~~~L~~~~~~~gi~~ 519 (564)
+++++++.|.+.++..+++.
T Consensus 183 ia~n~~~~l~~~a~~~~~~~ 202 (212)
T COG0560 183 IAVNPKPKLRALADVRIWPI 202 (212)
T ss_pred eEeCcCHHHHHHHHHhcChh
Confidence 99999999999999999865
No 10
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.90 E-value=7.7e-23 Score=200.43 Aligned_cols=193 Identities=18% Similarity=0.188 Sum_probs=141.8
Q ss_pred EEeeccccceecccchHHHHHHHHHhCCCCCCCCCcccccccCcccccccHhHHHHHHHHHHHHHHhhcCCCccccCCCH
Q 008479 265 IIFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEEYEQCIESFMPSEKVENFNY 344 (564)
Q Consensus 265 lii~DFD~TiT~~DT~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~y~~~~~~~~~~~~p~~~~~~~~~ 344 (564)
+|+||||||||..||+..+++.. ..+.|..+...++.+ ++++
T Consensus 1 ~~~fDFDgTit~~d~~~~~~~~~-----------------------~~~~~~~~~~~~~~g---------------~~~~ 42 (214)
T TIGR03333 1 FIICDFDGTITNNDNIISIMKQF-----------------------APPEWEALKDGVLSK---------------TLSI 42 (214)
T ss_pred CEEeccCCCCCcchhHHHHHHHh-----------------------CcHHHHHHHHHHHcC---------------CccH
Confidence 48999999999999988777632 335676665544332 1233
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhccCCCHHHHHHHh-hcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHH
Q 008479 345 ETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAG-ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRA 423 (564)
Q Consensus 345 ~~~~~~l~~l~e~e~~s~~rv~~~~~f~Gi~~~~i~~~~-~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~ 423 (564)
.+... ++. ..++.-..+++.+++ +.++++||+.++++.++++| ++++|+|+|. ..+|++
T Consensus 43 ~e~~~--------------~~~--~~~~~~~~~~~~~~~~~~~~l~pg~~e~l~~l~~~g---~~~~IvS~~~-~~~i~~ 102 (214)
T TIGR03333 43 QEGVG--------------RMF--GLLPSSLKEEITSFVLETAEIREGFREFVAFINEHG---IPFYVISGGM-DFFVYP 102 (214)
T ss_pred HHHHH--------------HHH--hhCCCchHHHHHHHHHhcCcccccHHHHHHHHHHCC---CeEEEECCCc-HHHHHH
Confidence 32211 111 222222345777754 46899999999999999998 9999999997 899999
Q ss_pred HHhhcCCCceeEEeeceeecCccccccccc------cCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcC
Q 008479 424 SFSSAGLNALNVHANEFSFKESISTGEIIE------KVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEAD 497 (564)
Q Consensus 424 ~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~------~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad 497 (564)
+++.++. ...|+||++.++++..++.... ...||.||..+++++... +.+++|||||.||++++..||
T Consensus 103 il~~~~~-~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~~l~~~~~~-----~~~~i~iGDg~~D~~~a~~Ad 176 (214)
T TIGR03333 103 LLEGIVE-KDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPSLIRKLSEP-----NDYHIVIGDSVTDVEAAKQSD 176 (214)
T ss_pred HHHhhCC-cccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHHHHHHHhhc-----CCcEEEEeCCHHHHHHHHhCC
Confidence 9987643 3679999999986654443321 123489999999987742 467999999999999999999
Q ss_pred ccEEEcCChhHHHHHHhhCCceeecCc
Q 008479 498 IGIVIGSSSSLRRVGSQFGVTFIPLYP 524 (564)
Q Consensus 498 ~giv~~~~~~L~~~~~~~gi~~~p~~~ 524 (564)
+ +++ ++.|..+|++.|+++.|+.+
T Consensus 177 ~--~~a-r~~l~~~~~~~~~~~~~~~~ 200 (214)
T TIGR03333 177 L--CFA-RDYLLNECEELGLNHAPFQD 200 (214)
T ss_pred e--eEe-hHHHHHHHHHcCCCccCcCC
Confidence 4 554 44789999999999999975
No 11
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.89 E-value=5.5e-22 Score=195.06 Aligned_cols=196 Identities=19% Similarity=0.197 Sum_probs=142.6
Q ss_pred CCeEEeeccccceecccchHHHHHHHHHhCCCCCCCCCcccccccCcccccccHhHHHHHHHHHHHHHHhhcCCCccccC
Q 008479 262 DRLIIFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEEYEQCIESFMPSEKVEN 341 (564)
Q Consensus 262 ~~~lii~DFD~TiT~~DT~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~y~~~~~~~~~~~~p~~~~~~ 341 (564)
++.+|+||||||||..|+...+++-. ..+.|..+.+.|+++-
T Consensus 2 ~~~~vifDfDgTi~~~d~~~~~~~~~-----------------------~~~~~~~i~~~~~~g~--------------- 43 (219)
T PRK09552 2 MSIQIFCDFDGTITNNDNIIAIMKKF-----------------------APPEWEELKDDILSQE--------------- 43 (219)
T ss_pred CCcEEEEcCCCCCCcchhhHHHHHHh-----------------------CHHHHHHHHHHHHhCC---------------
Confidence 35699999999999999976544421 1245666666554431
Q ss_pred CCHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCHHHHHHHh-hcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHH
Q 008479 342 FNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAG-ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDL 420 (564)
Q Consensus 342 ~~~~~~~~~l~~l~e~e~~s~~rv~~~~~f~Gi~~~~i~~~~-~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~ 420 (564)
+++.+- +. ++. ..+.+...+++.+.. +++.++||+.++++.++++| +++.|+|+|+ ..+
T Consensus 44 ~~~~~~------~~--------~~~--~~l~~~~~~~~~~~~~~~~~l~pG~~e~l~~l~~~g---~~~~IvS~~~-~~~ 103 (219)
T PRK09552 44 LSIQEG------VG--------QMF--QLLPSNLKEEIIQFLLETAEIREGFHEFVQFVKENN---IPFYVVSGGM-DFF 103 (219)
T ss_pred cCHHHH------HH--------HHH--HhCCCCchHHHHHHHHhCCCcCcCHHHHHHHHHHcC---CeEEEECCCc-HHH
Confidence 222221 11 111 224444557777754 57899999999999999999 9999999998 899
Q ss_pred HHHHHhhcCCCceeEEeeceeecCcccccccccc------CCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhh
Q 008479 421 IRASFSSAGLNALNVHANEFSFKESISTGEIIEK------VESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLL 494 (564)
Q Consensus 421 I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~------~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~ 494 (564)
|+++|++. +....|+||.+.++++..+.....+ ..+|.+|..+++++... +.++||||||.+|+++++
T Consensus 104 i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~~l~~~~~~-----~~~~i~iGDs~~Di~aa~ 177 (219)
T PRK09552 104 VYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPSLIRKLSDT-----NDFHIVIGDSITDLEAAK 177 (219)
T ss_pred HHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHHHHHHhccC-----CCCEEEEeCCHHHHHHHH
Confidence 99999987 6556799999998765433222211 12567899988876532 468999999999999999
Q ss_pred hcCccEEEcCChhHHHHHHhhCCceeecCc
Q 008479 495 EADIGIVIGSSSSLRRVGSQFGVTFIPLYP 524 (564)
Q Consensus 495 ~Ad~giv~~~~~~L~~~~~~~gi~~~p~~~ 524 (564)
.||+ +++ +..|.++|+++|++++|+.+
T Consensus 178 ~Ag~--~~a-~~~l~~~~~~~~~~~~~~~~ 204 (219)
T PRK09552 178 QADK--VFA-RDFLITKCEELGIPYTPFET 204 (219)
T ss_pred HCCc--cee-HHHHHHHHHHcCCCccccCC
Confidence 9995 444 44788999999999999975
No 12
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.88 E-value=4.6e-22 Score=205.45 Aligned_cols=192 Identities=19% Similarity=0.202 Sum_probs=156.0
Q ss_pred CCCeEEeeccccceecccchHHHHHHHHHhCCCCCCCCCcccccccCcccccccHhHHHHHHHHHHHHHHhhcCCCcccc
Q 008479 261 GDRLIIFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEEYEQCIESFMPSEKVE 340 (564)
Q Consensus 261 ~~~~lii~DFD~TiT~~DT~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~y~~~~~~~~~~~~p~~~~~ 340 (564)
+.+.+++||||||++..++++.+++.. + ....+..+++.++.+
T Consensus 108 ~~~~LvvfDmDGTLI~~e~i~eia~~~-----g-----------------~~~~v~~it~~~m~G--------------- 150 (322)
T PRK11133 108 RTPGLLVMDMDSTAIQIECIDEIAKLA-----G-----------------TGEEVAEVTERAMRG--------------- 150 (322)
T ss_pred cCCCEEEEECCCCCcchHHHHHHHHHh-----C-----------------CchHHHHHHHHHHcC---------------
Confidence 457799999999999999999988855 1 334555555544332
Q ss_pred CCCHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHH
Q 008479 341 NFNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDL 420 (564)
Q Consensus 341 ~~~~~~~~~~l~~l~e~e~~s~~rv~~~~~f~Gi~~~~i~~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~ 420 (564)
+++|.+++. .++ ..++|.+.+.+.+..+.++++||+.++++.++++| +++.|+|+|+ ..+
T Consensus 151 ------eldf~esl~-------~rv---~~l~g~~~~il~~v~~~l~l~pGa~elL~~Lk~~G---~~~aIvSgg~-~~~ 210 (322)
T PRK11133 151 ------ELDFEASLR-------QRV---ATLKGADANILQQVRENLPLMPGLTELVLKLQALG---WKVAIASGGF-TYF 210 (322)
T ss_pred ------CcCHHHHHH-------HHH---HHhCCCCHHHHHHHHHhCCCChhHHHHHHHHHHcC---CEEEEEECCc-chh
Confidence 122222222 244 35688887777777788999999999999999999 9999999998 788
Q ss_pred HHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccE
Q 008479 421 IRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGI 500 (564)
Q Consensus 421 I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gi 500 (564)
++.++++.|+ ..+++|.+.+.+|+.||.+.+.+..+..|.+.++++.+..+. ...++|+||||.||++|+..||+||
T Consensus 211 ~~~l~~~Lgl--d~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~~lgi-~~~qtIaVGDg~NDl~m~~~AGlgi 287 (322)
T PRK11133 211 ADYLRDKLRL--DAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQEYEI-PLAQTVAIGDGANDLPMIKAAGLGI 287 (322)
T ss_pred HHHHHHHcCC--CeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHHHcCC-ChhhEEEEECCHHHHHHHHHCCCeE
Confidence 9998888776 688999999999999998887777888999999999988776 3578999999999999999999999
Q ss_pred EEcCChhHHHHH
Q 008479 501 VIGSSSSLRRVG 512 (564)
Q Consensus 501 v~~~~~~L~~~~ 512 (564)
++++++.+++.+
T Consensus 288 A~nAkp~Vk~~A 299 (322)
T PRK11133 288 AYHAKPKVNEQA 299 (322)
T ss_pred EeCCCHHHHhhC
Confidence 999999888655
No 13
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=99.88 E-value=2.4e-22 Score=196.36 Aligned_cols=200 Identities=21% Similarity=0.369 Sum_probs=144.9
Q ss_pred CcccccccHhHHHHHHHHHHHHHHhhcCCCccccCCCHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCHHHHHHHhh--
Q 008479 307 SSGELRNTWGLLSKQYTEEYEQCIESFMPSEKVENFNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAGE-- 384 (564)
Q Consensus 307 ~~~~~~~~w~~~~~~y~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~l~e~e~~s~~rv~~~~~f~Gi~~~~i~~~~~-- 384 (564)
+||++....+.+++.|.++..+++++|+|+|.++.++.+++.++ |.|||+++|+.+++. |+++++|.++++
T Consensus 15 sshgil~~~~~~~~~~~~k~~~L~~kY~PIE~dp~~s~eEK~p~---M~EWw~kah~llv~~----~l~k~~i~~~V~~s 87 (246)
T PF05822_consen 15 SSHGILENSKLLPEEYRKKLKELFEKYYPIEIDPTMSIEEKIPH---MEEWWTKAHELLVEQ----GLTKSEIEEAVKES 87 (246)
T ss_dssp -HHHHHHTSTTS-HHHHHHHHHHHHHHHHHHT-SSS-HHHHHHH---HHHHHHHHHHHHHHH----T-BGGGHHHHHHCS
T ss_pred ChHHHHhcCCcCCHHHHHHHHHHHhhccccccCCCCCHHHHHHH---HHHHHHHHHHHHHhc----CcCHHHHHHHHHhc
Confidence 46667777788999999999999999999999999999999986 669999999999985 569999999987
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcC--CCceeEEeeceeecC-ccccccccccCCCCCch
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAG--LNALNVHANEFSFKE-SISTGEIIEKVESPIDK 461 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g--~~~~~I~aN~l~~~~-g~~tG~~~~~~~~g~~K 461 (564)
++.||+|+.+||+.|++++ +|++|+|+|. +++|+.+|++.+ .++++|+||.|.||+ |..+| |.+++....+|
T Consensus 88 ~i~LRdg~~~~f~~L~~~~---IP~lIFSAGl-gdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~g-F~~~lIH~~NK 162 (246)
T PF05822_consen 88 DIMLRDGVEEFFDKLEEHN---IPLLIFSAGL-GDVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVG-FKGPLIHTFNK 162 (246)
T ss_dssp ---B-BTHHHHHHHHHCTT-----EEEEEEEE-HHHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEE-E-SS---TT-H
T ss_pred chhhhcCHHHHHHHHHhcC---CCEEEEeCCc-HHHHHHHHHHcCCCCCCeEEEeeeEEECCcceEee-cCCCceEEeeC
Confidence 6899999999999999998 9999999999 999999999887 368999999999974 77777 66677777788
Q ss_pred HH-HHH--HHHHHhCCCCCccEEEEcCCccchhhhhhc-Cc------cEEEcCC-hhHHHHHHhhCCcee
Q 008479 462 VQ-AFN--NTLEKYGTDRKNLSVYIGDSVGDLLCLLEA-DI------GIVIGSS-SSLRRVGSQFGVTFI 520 (564)
Q Consensus 462 ~~-~l~--~l~~~~~~~~~~~viyiGDs~~Dl~~l~~A-d~------giv~~~~-~~L~~~~~~~gi~~~ 520 (564)
.. .++ .+.+. ...+.+++..|||.+|+.|..-. +. |++-..- ..|.+|.+.+.|-++
T Consensus 163 n~~~l~~~~~~~~--~~~R~NvlLlGDslgD~~Ma~G~~~~~~~lkIGFLn~~ve~~l~~Y~~~yDIVlv 230 (246)
T PF05822_consen 163 NESALEDSPYFKQ--LKKRTNVLLLGDSLGDLHMADGVPDEENVLKIGFLNDKVEENLEKYLEAYDIVLV 230 (246)
T ss_dssp HHHHHTTHHHHHC--TTT--EEEEEESSSGGGGTTTT-S--SEEEEEEEE-SSHHHHHHHHHCCSSEEEE
T ss_pred CcccccCchHHHH--hccCCcEEEecCccCChHhhcCCCccccEEEEEecccCHHHHHHHHHhcCCEEEE
Confidence 75 332 12222 22467899999999999998766 33 3222221 357788877776443
No 14
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.87 E-value=1.9e-21 Score=190.75 Aligned_cols=130 Identities=18% Similarity=0.259 Sum_probs=103.5
Q ss_pred cCCCHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCce--eEEeeceeecC-cccc
Q 008479 372 KGINLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNAL--NVHANEFSFKE-SIST 448 (564)
Q Consensus 372 ~Gi~~~~i~~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~--~I~aN~l~~~~-g~~t 448 (564)
.|++.++|.+..+.+++.|||.++++.+.++. .+.+++|||++. ..||+.+|+++|+... +|++|...|++ |...
T Consensus 56 ~gvt~~~I~~~l~~ip~~pgm~~~l~~l~~~~-~~~~~~IiSDaN-s~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~ 133 (234)
T PF06888_consen 56 QGVTPEDIRDALRSIPIDPGMKELLRFLAKNQ-RGFDLIIISDAN-SFFIETILEHHGLRDCFSEIFTNPACFDADGRLR 133 (234)
T ss_pred cCCCHHHHHHHHHcCCCCccHHHHHHHHHhcC-CCceEEEEeCCc-HhHHHHHHHhCCCccccceEEeCCceecCCceEE
Confidence 48899999999999999999999999996521 239999999997 8999999999998644 89999999975 5322
Q ss_pred -cccc---cc-CCCCCchHHHHHHHHHHhCC--CCCccEEEEcCCccchhhhhh---cCccEEEcCC
Q 008479 449 -GEII---EK-VESPIDKVQAFNNTLEKYGT--DRKNLSVYIGDSVGDLLCLLE---ADIGIVIGSS 505 (564)
Q Consensus 449 -G~~~---~~-~~~g~~K~~~l~~l~~~~~~--~~~~~viyiGDs~~Dl~~l~~---Ad~giv~~~~ 505 (564)
..+. ++ +..++||..+|++++..... ..+.++||||||.||+|+++. .| +|+..+
T Consensus 134 v~pyh~h~C~~C~~NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~~L~~~D--~v~~R~ 198 (234)
T PF06888_consen 134 VRPYHSHGCSLCPPNMCKGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCPALRLRPRD--VVFPRK 198 (234)
T ss_pred EeCccCCCCCcCCCccchHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCcccccCCCC--EEecCC
Confidence 2222 32 33458999999999986411 135899999999999999986 77 677544
No 15
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.87 E-value=3.5e-22 Score=190.93 Aligned_cols=228 Identities=16% Similarity=0.250 Sum_probs=171.8
Q ss_pred CCCeEEeeccccceecccchHHHHHHHHHhCCCCCCCCCcccccccCcccccc-cHhHHHHHHHHHHHHHHhhcCCCccc
Q 008479 261 GDRLIIFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRN-TWGLLSKQYTEEYEQCIESFMPSEKV 339 (564)
Q Consensus 261 ~~~~lii~DFD~TiT~~DT~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~w~~~~~~y~~~~~~~~~~~~p~~~~ 339 (564)
..++++|+|||.|||++-|- .+++++++++ +-+ ....+...|.+++.+++.+|+|+|.+
T Consensus 36 a~~~~vIsdfd~TLSrfa~~--------~G~r~pS~~~------------Vfd~~~~~~~~e~~~k~~~LyhkY~PIEid 95 (298)
T KOG3128|consen 36 AGKLQVISDFDYTLSRFATE--------QGKRCPSCFG------------VFDDNVKRLKPECRAKFVALYHKYYPIEID 95 (298)
T ss_pred ccceeEeecCchhHHHHHHh--------hcCcCCcccc------------chhhhhhcCCHHHHHHHHHHHhhccCcccC
Confidence 57999999999999975221 2455554444 444 67778889999999999999999999
Q ss_pred cCCCHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCHHHHHHHhh--cCCCCccHHHHHHHHHHcCCCCCcEEEEccccC
Q 008479 340 ENFNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAGE--RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWC 417 (564)
Q Consensus 340 ~~~~~~~~~~~l~~l~e~e~~s~~rv~~~~~f~Gi~~~~i~~~~~--~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s 417 (564)
+.++++++.++ |.|||.+||+.+++ .|+++++|++.+. ++.||+|+.+|+..|++++ +|+.|+|+|+
T Consensus 96 P~ltieEKvp~---MeeWW~kSH~Lliq----~~f~k~~I~~~Va~s~i~lReg~~~ff~~L~~~~---IP~~iFSAGi- 164 (298)
T KOG3128|consen 96 PVLTIEEKVPH---MEEWWTKSHELLIQ----GGFSKNAIDDIVAESNIALREGYEEFFEALQAHE---IPLLIFSAGI- 164 (298)
T ss_pred CCCChhhhchH---HHHHHhcccceeec----CCcCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC---CceEEEecch-
Confidence 99999999997 55999999999987 4679999999987 6899999999999999999 9999999999
Q ss_pred HHHHHHHHhhcC--CCceeEEeeceeec-CccccccccccCCCCCchHH-HHHHHHHHh-CCCCCccEEEEcCCccchhh
Q 008479 418 GDLIRASFSSAG--LNALNVHANEFSFK-ESISTGEIIEKVESPIDKVQ-AFNNTLEKY-GTDRKNLSVYIGDSVGDLLC 492 (564)
Q Consensus 418 ~~~I~~~l~~~g--~~~~~I~aN~l~~~-~g~~tG~~~~~~~~g~~K~~-~l~~l~~~~-~~~~~~~viyiGDs~~Dl~~ 492 (564)
.+.|+.++++.. .++.+++||-+.|+ +|...| |..++....||.. .++...... ....+.++|+.|||.+|+.|
T Consensus 165 gdiiEev~~q~~~~~pn~k~vSN~~~F~edg~l~g-F~~~Lihtfnkn~~v~~~~s~yf~~~~~~~nVillGdsigdl~m 243 (298)
T KOG3128|consen 165 GDIIEEVTRQKLVLHPNVKFVSNYMDFDEDGNLCG-FSQPLIHTFNKNSSVLQNESEYFHQLAGRVNVILLGDSIGDLHM 243 (298)
T ss_pred HHHHHHHHHHHhccCccHHhhhhhhhhcccchhhh-hhHHHHHHHccchHHHHhhhHHHhhccCCceEEEeccccccchh
Confidence 999999998753 35789999999998 454444 3334444444432 222211111 11235789999999999999
Q ss_pred hhhc-Cc------cEEEc-CChhHHHHHHhhCCcee
Q 008479 493 LLEA-DI------GIVIG-SSSSLRRVGSQFGVTFI 520 (564)
Q Consensus 493 l~~A-d~------giv~~-~~~~L~~~~~~~gi~~~ 520 (564)
...+ ++ |+... -...+.+|.+.+.|-.+
T Consensus 244 a~gv~~~~~iLkig~l~d~vee~~~~ymd~ydIvL~ 279 (298)
T KOG3128|consen 244 ADGVPRVGHILKIGYLNDSVEEALEKYMDSYDIVLV 279 (298)
T ss_pred hcCCcccccceeeecccchHHHHHHHHHhhcceEEe
Confidence 8874 22 32222 11467888888887544
No 16
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.84 E-value=1.7e-20 Score=177.52 Aligned_cols=121 Identities=21% Similarity=0.249 Sum_probs=102.0
Q ss_pred hhccCCCHHHHHH-H-hhcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeec-Cc
Q 008479 369 GVLKGINLEDIKK-A-GERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFK-ES 445 (564)
Q Consensus 369 ~~f~Gi~~~~i~~-~-~~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~-~g 445 (564)
..+++...+++.+ + .+.+.++||+.++++.++++| ++++|+|+|. ..+|+++++++|+ ..+++|.+.++ +|
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g---~~~~ivS~~~-~~~i~~~~~~~g~--~~~~~~~~~~~~~g 126 (177)
T TIGR01488 53 ALLHRSRSEEVAKEFLARQVALRPGARELISWLKERG---IDTVIVSGGF-DFFVEPVAEKLGI--DDVFANRLEFDDNG 126 (177)
T ss_pred HHhCCCCHHHHHHHHHHhcCCcCcCHHHHHHHHHHCC---CEEEEECCCc-HHHHHHHHHHcCC--chheeeeEEECCCC
Confidence 4567777666665 5 457889999999999999998 9999999998 8999999999886 47999999996 67
Q ss_pred cccccccc-cCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhc
Q 008479 446 ISTGEIIE-KVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEA 496 (564)
Q Consensus 446 ~~tG~~~~-~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~A 496 (564)
..+|++.+ .++.+.+|...++++....+.+ +.+++|||||.||++|++.|
T Consensus 127 ~~~g~~~~~~~~~~~~K~~~l~~~~~~~~~~-~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 127 LLTGPIEGQVNPEGECKGKVLKELLEESKIT-LKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred EEeCccCCcccCCcchHHHHHHHHHHHhCCC-HHHEEEEeCCHHHHHHHhcC
Confidence 88887765 5677899999999988776542 46899999999999999865
No 17
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=99.83 E-value=1.6e-19 Score=176.31 Aligned_cols=132 Identities=12% Similarity=0.098 Sum_probs=109.6
Q ss_pred hhhccCCCHHHHHHHhh--------cCCCCccHHHHHH-HHHHcCCCCCcEEEEccccCHHHHHHHHhhcCC-CceeEEe
Q 008479 368 SGVLKGINLEDIKKAGE--------RLSLQDGCTTFFQ-KVVKNENLNANVHVLSYCWCGDLIRASFSSAGL-NALNVHA 437 (564)
Q Consensus 368 ~~~f~Gi~~~~i~~~~~--------~i~lr~G~~efl~-~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~-~~~~I~a 437 (564)
..+|+|++.+++.+.++ ...++||+.+.++ .++++| ++++|||++. ..+++++++..++ ..++++|
T Consensus 67 ~~~~~g~~~~~l~~~~~~f~~~~~~~~~l~pga~e~L~~~l~~~G---~~v~IvSas~-~~~~~~ia~~~~~~~~~~~i~ 142 (210)
T TIGR01545 67 WACTFGHREAHLQDLEADFVAAFRDKVTAFPLVAERLRQYLESSD---ADIWLITGSP-QPLVEAVYFDSNFIHRLNLIA 142 (210)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhCC---CEEEEEcCCc-HHHHHHHHHhccccccCcEEE
Confidence 46789999988877543 3468999999996 566678 9999999997 8899999877543 4478999
Q ss_pred eceeecCccccccccccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCChhHHH
Q 008479 438 NEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLRR 510 (564)
Q Consensus 438 N~l~~~~g~~tG~~~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~~~L~~ 510 (564)
+++++.+| |.+.+.+|.|..|+++++++... .....+++|||.||++||..||.++++++++.|++
T Consensus 143 t~le~~~g---g~~~g~~c~g~~Kv~rl~~~~~~----~~~~~~aYsDS~~D~pmL~~a~~~~~Vnp~~~L~~ 208 (210)
T TIGR01545 143 SQIERGNG---GWVLPLRCLGHEKVAQLEQKIGS----PLKLYSGYSDSKQDNPLLAFCEHRWRVSKRGELQQ 208 (210)
T ss_pred EEeEEeCC---ceEcCccCCChHHHHHHHHHhCC----ChhheEEecCCcccHHHHHhCCCcEEECcchHhcc
Confidence 99998655 66777899999999999998842 23567899999999999999999999999988874
No 18
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.83 E-value=2.6e-20 Score=171.91 Aligned_cols=176 Identities=18% Similarity=0.197 Sum_probs=143.9
Q ss_pred CCeEEeeccccceecccchHHHHHHHHHhCCCCCCCCCcccccccCcccccccHhHHHHHHHHHHHHHHhhcCCCccccC
Q 008479 262 DRLIIFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEEYEQCIESFMPSEKVEN 341 (564)
Q Consensus 262 ~~~lii~DFD~TiT~~DT~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~y~~~~~~~~~~~~p~~~~~~ 341 (564)
++-+++||.|+|++..+-|+.|+.... ....-..++.
T Consensus 15 ~~~aVcFDvDSTvi~eEgIdelA~~~G----------------------~~~~Va~~T~--------------------- 51 (227)
T KOG1615|consen 15 SADAVCFDVDSTVIQEEGIDELAAYCG----------------------VGEAVAEVTR--------------------- 51 (227)
T ss_pred hcCeEEEecCcchhHHhhHHHHHHHhC----------------------chHHHHHHHH---------------------
Confidence 455899999999999999999998763 2223333332
Q ss_pred CCHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCHHHHHHHh--hcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHH
Q 008479 342 FNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAG--ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGD 419 (564)
Q Consensus 342 ~~~~~~~~~l~~l~e~e~~s~~rv~~~~~f~Gi~~~~i~~~~--~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~ 419 (564)
..|.+..+|.++|. .|+ .+|++ +..++.+.+ ++..|.||.+||+..|+++| ..++++|+|| ..
T Consensus 52 rAMng~~~F~eaL~-------~Rl---~llqp-~~~qv~~~v~~~k~~lT~Gi~eLv~~L~~~~---~~v~liSGGF-~~ 116 (227)
T KOG1615|consen 52 RAMNGEADFQEALA-------ARL---SLLQP-LQVQVEQFVIKQKPTLTPGIRELVSRLHARG---TQVYLISGGF-RQ 116 (227)
T ss_pred HHhCCCCcHHHHHH-------HHH---HHhcc-cHHHHHHHHhcCCCccCCCHHHHHHHHHHcC---CeEEEEcCCh-HH
Confidence 25677778888887 466 68888 566666654 37899999999999999999 9999999999 99
Q ss_pred HHHHHHhhcCCCceeEEeeceeec-Cccccc-cccccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcC
Q 008479 420 LIRASFSSAGLNALNVHANEFSFK-ESISTG-EIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEAD 497 (564)
Q Consensus 420 ~I~~~l~~~g~~~~~I~aN~l~~~-~g~~tG-~~~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad 497 (564)
+|.++..+.|++...|+||.|.|+ +|.++| ....+...+.+|..+++.+++.. ....+++||||.||++|+..||
T Consensus 117 ~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~~lrk~~---~~~~~~mvGDGatDlea~~pa~ 193 (227)
T KOG1615|consen 117 LIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIALLRKNY---NYKTIVMVGDGATDLEAMPPAD 193 (227)
T ss_pred HHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHHHHHHhCC---ChheeEEecCCccccccCCchh
Confidence 999999999998888999999997 578877 55567778889999999988743 2467889999999999999987
Q ss_pred c
Q 008479 498 I 498 (564)
Q Consensus 498 ~ 498 (564)
.
T Consensus 194 a 194 (227)
T KOG1615|consen 194 A 194 (227)
T ss_pred h
Confidence 5
No 19
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.82 E-value=1.4e-19 Score=177.61 Aligned_cols=137 Identities=23% Similarity=0.303 Sum_probs=117.7
Q ss_pred hccCCCHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccc
Q 008479 370 VLKGINLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTG 449 (564)
Q Consensus 370 ~f~Gi~~~~i~~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG 449 (564)
.|.+.+.+.+.+..+.+.++||+.++++.++++| ++++|||+|+ ..+++.+++..|+ ..+++|.+.+++|.++|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g---~~~~IvS~~~-~~~~~~~l~~~~i--~~~~~~~~~~~~~~~~~ 141 (219)
T TIGR00338 68 LLKGLPVELLKEVRENLPLTEGAEELVKTLKEKG---YKVAVISGGF-DLFAEHVKDKLGL--DAAFANRLEVEDGKLTG 141 (219)
T ss_pred HhCCCCHHHHHHHHhcCCcCCCHHHHHHHHHHCC---CEEEEECCCc-HHHHHHHHHHcCC--CceEeeEEEEECCEEEE
Confidence 4567788888888888999999999999999988 9999999998 8999999998887 46899999999888888
Q ss_pred cccccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCChhHHHHHH
Q 008479 450 EIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLRRVGS 513 (564)
Q Consensus 450 ~~~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~~~L~~~~~ 513 (564)
...++...+.+|...++.++...+. .+.+++|||||.+|+.++..|++++++++++.+++.+.
T Consensus 142 ~~~~~~~~~~~k~~~~~~~~~~~~~-~~~~~i~iGDs~~Di~aa~~ag~~i~~~~~~~~~~~a~ 204 (219)
T TIGR00338 142 LVEGPIVDASYKGKTLLILLRKEGI-SPENTVAVGDGANDLSMIKAAGLGIAFNAKPKLQQKAD 204 (219)
T ss_pred EecCcccCCcccHHHHHHHHHHcCC-CHHHEEEEECCHHHHHHHHhCCCeEEeCCCHHHHHhch
Confidence 7766555667799999988887765 35789999999999999999999999988877776553
No 20
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.82 E-value=1.6e-19 Score=175.25 Aligned_cols=130 Identities=20% Similarity=0.236 Sum_probs=113.1
Q ss_pred cCCCHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecC-cccccc
Q 008479 372 KGINLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKE-SISTGE 450 (564)
Q Consensus 372 ~Gi~~~~i~~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~-g~~tG~ 450 (564)
.|++.+++.+..+.++++||+.++++.++++ .+++|||+|+ ..++++++++.|+ .+++||++.+++ |.+||.
T Consensus 53 ~g~~~~~i~~~~~~i~l~pga~ell~~lk~~----~~~~IVS~~~-~~~~~~il~~lgi--~~~~an~l~~~~~g~~tG~ 125 (203)
T TIGR02137 53 HGLKLGDIQEVIATLKPLEGAVEFVDWLRER----FQVVILSDTF-YEFSQPLMRQLGF--PTLLCHKLEIDDSDRVVGY 125 (203)
T ss_pred CCCCHHHHHHHHHhCCCCccHHHHHHHHHhC----CeEEEEeCCh-HHHHHHHHHHcCC--chhhceeeEEecCCeeECe
Confidence 4999999999999999999999999999985 4899999999 8999999999887 479999999988 888886
Q ss_pred ccccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCChhHHHHHHhhC
Q 008479 451 IIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLRRVGSQFG 516 (564)
Q Consensus 451 ~~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~~~L~~~~~~~g 516 (564)
.. ..+.+|..+++.+.. . +.++++||||.||++|+..||+||++++++.+++.+.++-
T Consensus 126 ~~---~~~~~K~~~l~~l~~-~----~~~~v~vGDs~nDl~ml~~Ag~~ia~~ak~~~~~~~~~~~ 183 (203)
T TIGR02137 126 QL---RQKDPKRQSVIAFKS-L----YYRVIAAGDSYNDTTMLSEAHAGILFHAPENVIREFPQFP 183 (203)
T ss_pred ee---cCcchHHHHHHHHHh-h----CCCEEEEeCCHHHHHHHHhCCCCEEecCCHHHHHhCCCCC
Confidence 33 345689999998853 2 2479999999999999999999999999999998875543
No 21
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.81 E-value=4.6e-19 Score=171.63 Aligned_cols=133 Identities=20% Similarity=0.161 Sum_probs=115.8
Q ss_pred hhhccCCCHHHHHHHhhc-------CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeece
Q 008479 368 SGVLKGINLEDIKKAGER-------LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEF 440 (564)
Q Consensus 368 ~~~f~Gi~~~~i~~~~~~-------i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l 440 (564)
...|+|++.+++.+.++. ..++||+.++++.++++| .+++|+|++. ..+++.+++..|+ .++++|++
T Consensus 61 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g---~~v~ivS~s~-~~~v~~~~~~lg~--~~~~~~~l 134 (202)
T TIGR01490 61 LDALAGLLEEDVRAIVEEFVNQKIESILYPEARDLIRWHKAEG---HTIVLVSASL-TILVKPLARILGI--DNAIGTRL 134 (202)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHCC---CEEEEEeCCc-HHHHHHHHHHcCC--cceEecce
Confidence 457899999999887653 468999999999999988 9999999998 8999999998776 56899999
Q ss_pred ee-cCccccccccccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCChh
Q 008479 441 SF-KESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSS 507 (564)
Q Consensus 441 ~~-~~g~~tG~~~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~~~ 507 (564)
.+ ++|.+||++.++.+.|..|...+++++++.+.+ .+.+++||||.+|++|+..|+.++++.+++.
T Consensus 135 ~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~~~~~~~-~~~~~~~gDs~~D~~~~~~a~~~~~v~~~~~ 201 (202)
T TIGR01490 135 EESEDGIYTGNIDGNNCKGEGKVHALAELLAEEQID-LKDSYAYGDSISDLPLLSLVGHPYVVNPDKK 201 (202)
T ss_pred EEcCCCEEeCCccCCCCCChHHHHHHHHHHHHcCCC-HHHcEeeeCCcccHHHHHhCCCcEEeCCCCC
Confidence 98 678999998877788999999999998876652 4689999999999999999999999987653
No 22
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.76 E-value=2.1e-17 Score=159.45 Aligned_cols=133 Identities=19% Similarity=0.160 Sum_probs=108.4
Q ss_pred CCCHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecC-ccccccc
Q 008479 373 GINLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKE-SISTGEI 451 (564)
Q Consensus 373 Gi~~~~i~~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~-g~~tG~~ 451 (564)
....+++.+..+++.++||+.++++.++++| ++++|||+|+ ..+++.+++.+|+ ..+++|.+.+++ |..++..
T Consensus 66 ~~~~~~~~~~~~~~~~~~g~~e~l~~l~~~g---~~~~IvS~~~-~~~~~~~l~~~g~--~~~~~~~~~~~~~g~~~p~~ 139 (201)
T TIGR01491 66 RLRREEVEEIFKEISLRDYAEELVRWLKEKG---LKTAIVSGGI-MCLAKKVAEKLNP--DYVYSNELVFDEKGFIQPDG 139 (201)
T ss_pred CCCHHHHHHHHHhCCCCccHHHHHHHHHHCC---CEEEEEeCCc-HHHHHHHHHHhCC--CeEEEEEEEEcCCCeEecce
Confidence 3467778887788999999999999999999 9999999998 8999999999886 578999988864 5555431
Q ss_pred cccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCChhHHHHHH
Q 008479 452 IEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLRRVGS 513 (564)
Q Consensus 452 ~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~~~L~~~~~ 513 (564)
. ......+|...++++.+..+.+ +.+++|||||.+|++|+..||+++++++++.|+++++
T Consensus 140 ~-~~~~~~~k~~~~~~~~~~~~~~-~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~~~~~~a~ 199 (201)
T TIGR01491 140 I-VRVTFDNKGEAVERLKRELNPS-LTETVAVGDSKNDLPMFEVADISISLGDEGHADYLAK 199 (201)
T ss_pred e-eEEccccHHHHHHHHHHHhCCC-HHHEEEEcCCHhHHHHHHhcCCeEEECCCccchhhcc
Confidence 1 1123456888888888776653 4789999999999999999999999998888887765
No 23
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.76 E-value=2e-17 Score=157.79 Aligned_cols=122 Identities=17% Similarity=0.182 Sum_probs=100.3
Q ss_pred cCCCHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCc--eeEEeeceeecC-cccc
Q 008479 372 KGINLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKE-SIST 448 (564)
Q Consensus 372 ~Gi~~~~i~~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~-g~~t 448 (564)
.+++.+++.+...+++++||+.++++.++++| ++++|+|++. ..+++.++++.++.. ..|++|++.+++ |..+
T Consensus 57 ~~~~~~~~~~~~~~~~l~~g~~~ll~~l~~~g---~~~~i~S~~~-~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~ 132 (188)
T TIGR01489 57 SGLKEDEILEVLKSAPIDPGFKEFIAFIKEHG---IDFIVISDGN-DFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHI 132 (188)
T ss_pred cCCCHHHHHHHHHhCCCCccHHHHHHHHHHcC---CcEEEEeCCc-HHHHHHHHHHcCChhheeEEeccCceECCCCcEE
Confidence 35678888888888999999999999999988 9999999986 899999999888753 379999999975 5655
Q ss_pred ccccc-----cCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEc
Q 008479 449 GEIIE-----KVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG 503 (564)
Q Consensus 449 G~~~~-----~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~ 503 (564)
+.... ....|.+|..++++++... +.+++|||||.+|+++++.|| ++++
T Consensus 133 ~~~~~~~~~~~~~~g~~K~~~~~~~~~~~----~~~~i~iGD~~~D~~aa~~~d--~~~a 186 (188)
T TIGR01489 133 VWPHHCHGCCSCPCGCCKGKVIHKLSEPK----YQHIIYIGDGVTDVCPAKLSD--VVFA 186 (188)
T ss_pred EecCCCCccCcCCCCCCHHHHHHHHHhhc----CceEEEECCCcchhchHhcCC--cccc
Confidence 53322 3456789999999887642 468999999999999999998 5664
No 24
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.74 E-value=1.5e-17 Score=156.67 Aligned_cols=185 Identities=17% Similarity=0.206 Sum_probs=133.0
Q ss_pred CCCeEEeeccccceecccchHHHHHHHHHhCCCCCCCCCcccccccCcccccccHhHHHHHHHHHHHHHHhhcCCCcccc
Q 008479 261 GDRLIIFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEEYEQCIESFMPSEKVE 340 (564)
Q Consensus 261 ~~~~lii~DFD~TiT~~DT~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~y~~~~~~~~~~~~p~~~~~ 340 (564)
..+++++||||.||.+.||...+.+... . ......+.++|.+
T Consensus 11 ~~ril~~FDFD~TIid~dSD~wVv~~lp----~------------------~~l~~qL~~t~p~---------------- 52 (256)
T KOG3120|consen 11 SPRILLVFDFDRTIIDQDSDNWVVDELP----T------------------TDLFNQLRDTYPK---------------- 52 (256)
T ss_pred CCcEEEEEecCceeecCCcchHHHHhcc----c------------------chhHHHHHHhccc----------------
Confidence 3789999999999999999888887551 1 1112223232221
Q ss_pred CCCHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHH
Q 008479 341 NFNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDL 420 (564)
Q Consensus 341 ~~~~~~~~~~l~~l~e~e~~s~~rv~~~~~f~Gi~~~~i~~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~ 420 (564)
.+|+....||.++--=+|++.++|++..+.+++.||+.++++.+++.|. .+++|||+.- ..|
T Consensus 53 ---------------~~Wne~M~rv~k~Lheqgv~~~~ik~~~r~iP~~Pgmv~lik~~ak~g~--~eliIVSDaN-sfF 114 (256)
T KOG3120|consen 53 ---------------GFWNELMDRVFKELHEQGVRIAEIKQVLRSIPIVPGMVRLIKSAAKLGC--FELIIVSDAN-SFF 114 (256)
T ss_pred ---------------chHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCccHHHHHHHHHhCCC--ceEEEEecCc-hhH
Confidence 1233333344432222688999999999999999999999999999882 5999999996 799
Q ss_pred HHHHHhhcCCCc--eeEEeeceeecC-cccc--cc---ccc-cCCCCCchHHHHHHHHHHhCC--CCCccEEEEcCCccc
Q 008479 421 IRASFSSAGLNA--LNVHANEFSFKE-SIST--GE---IIE-KVESPIDKVQAFNNTLEKYGT--DRKNLSVYIGDSVGD 489 (564)
Q Consensus 421 I~~~l~~~g~~~--~~I~aN~l~~~~-g~~t--G~---~~~-~~~~g~~K~~~l~~l~~~~~~--~~~~~viyiGDs~~D 489 (564)
|+.+|+++|+.. ..|++|...++. |.+. +. -++ .+..++||..+|.++....-. ..++++||+|||.||
T Consensus 115 Ie~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPsNmCKg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD 194 (256)
T KOG3120|consen 115 IEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPSNMCKGLVLDELVASQLKDGVRYERLIYVGDGAND 194 (256)
T ss_pred HHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCchhhhhhHHHHHHHHHHhhcCCceeeEEEEcCCCCC
Confidence 999999998642 379999999985 5321 11 122 356678999999998754311 124689999999999
Q ss_pred hhhhhh---cCccEEEc
Q 008479 490 LLCLLE---ADIGIVIG 503 (564)
Q Consensus 490 l~~l~~---Ad~giv~~ 503 (564)
+|+.+. .| +++.
T Consensus 195 ~CP~l~Lr~~D--~amp 209 (256)
T KOG3120|consen 195 FCPVLRLRACD--VAMP 209 (256)
T ss_pred cCcchhcccCc--eecc
Confidence 999776 45 5554
No 25
>PRK11590 hypothetical protein; Provisional
Probab=99.74 E-value=3.5e-17 Score=160.05 Aligned_cols=129 Identities=12% Similarity=0.057 Sum_probs=105.9
Q ss_pred ccCCCHHHHHHHhh--------cCCCCccHHHHHH-HHHHcCCCCCcEEEEccccCHHHHHHHHhhcCC-CceeEEeece
Q 008479 371 LKGINLEDIKKAGE--------RLSLQDGCTTFFQ-KVVKNENLNANVHVLSYCWCGDLIRASFSSAGL-NALNVHANEF 440 (564)
Q Consensus 371 f~Gi~~~~i~~~~~--------~i~lr~G~~efl~-~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~-~~~~I~aN~l 440 (564)
+.|++.+++.+..+ .+.+.||+.+.++ .++++| ++++|+|++. ..+++++++..|+ ..++++|+++
T Consensus 71 ~~g~~~~~~~~~~~~f~~~~~~~~~~~pga~e~L~~~l~~~G---~~l~IvSas~-~~~~~~il~~l~~~~~~~~i~t~l 146 (211)
T PRK11590 71 TFGHSEARLQALEADFVRWFRDNVTAFPVVQERLTTYLLSSD---ADVWLITGSP-QPLVEQVYFDTPWLPRVNLIASQM 146 (211)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHhCcCCccHHHHHHHHHHhCC---CEEEEEeCCc-HHHHHHHHHHccccccCceEEEEE
Confidence 34667666655432 2577999999995 566677 9999999997 8999999998773 2468999999
Q ss_pred eecCccccccccccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCChhHHH
Q 008479 441 SFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLRR 510 (564)
Q Consensus 441 ~~~~g~~tG~~~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~~~L~~ 510 (564)
++ .+||++.+.+|.|..|++++++++.. .....++||||.||++||..|+.++++++++.|++
T Consensus 147 ~~---~~tg~~~g~~c~g~~K~~~l~~~~~~----~~~~~~aY~Ds~~D~pmL~~a~~~~~vnp~~~l~~ 209 (211)
T PRK11590 147 QR---RYGGWVLTLRCLGHEKVAQLERKIGT----PLRLYSGYSDSKQDNPLLYFCQHRWRVTPRGELQQ 209 (211)
T ss_pred EE---EEccEECCccCCChHHHHHHHHHhCC----CcceEEEecCCcccHHHHHhCCCCEEECccHHhhc
Confidence 87 58899999999999999999998842 23567899999999999999999999999988874
No 26
>PLN02954 phosphoserine phosphatase
Probab=99.73 E-value=8.9e-17 Score=158.22 Aligned_cols=181 Identities=19% Similarity=0.194 Sum_probs=127.2
Q ss_pred CCCeEEeeccccceecccchHHHHHHHHHhCCCCCCCCCcccccccCcccccccHhHHHHHHHHHHHHHHhhcCCCcccc
Q 008479 261 GDRLIIFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEEYEQCIESFMPSEKVE 340 (564)
Q Consensus 261 ~~~~lii~DFD~TiT~~DT~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~y~~~~~~~~~~~~p~~~~~ 340 (564)
+...+|+||||||||+.|++..+++.. + ..+.|..+.+.|+.+.
T Consensus 10 ~~~k~viFDfDGTL~~~~~~~~~~~~~-----g-----------------~~~~~~~~~~~~~~g~-------------- 53 (224)
T PLN02954 10 RSADAVCFDVDSTVCVDEGIDELAEFC-----G-----------------AGEAVAEWTAKAMGGS-------------- 53 (224)
T ss_pred ccCCEEEEeCCCcccchHHHHHHHHHc-----C-----------------ChHHHHHHHHHHHCCC--------------
Confidence 345688899999999999987777633 1 3345666555443321
Q ss_pred CCCHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCHHHHHHHhhc--CCCCccHHHHHHHHHHcCCCCCcEEEEccccCH
Q 008479 341 NFNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAGER--LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCG 418 (564)
Q Consensus 341 ~~~~~~~~~~l~~l~e~e~~s~~rv~~~~~f~Gi~~~~i~~~~~~--i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~ 418 (564)
+++++.... ++ +.++ .+.+++.+..+. ..++||+.++++.++++| ++++|+|+|. .
T Consensus 54 -~~~~~~~~~-------------~~---~~~~-~~~~~~~~~~~~~~~~l~pg~~e~l~~l~~~g---~~~~IvS~~~-~ 111 (224)
T PLN02954 54 -VPFEEALAA-------------RL---SLFK-PSLSQVEEFLEKRPPRLSPGIPELVKKLRARG---TDVYLVSGGF-R 111 (224)
T ss_pred -CCHHHHHHH-------------HH---HHcC-CCHHHHHHHHHHccCCCCccHHHHHHHHHHCC---CEEEEECCCc-H
Confidence 223221111 11 1112 245666666553 568999999999999998 9999999998 8
Q ss_pred HHHHHHHhhcCCCceeEEeeceeec-Cccccccccc-cCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhc
Q 008479 419 DLIRASFSSAGLNALNVHANEFSFK-ESISTGEIIE-KVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEA 496 (564)
Q Consensus 419 ~~I~~~l~~~g~~~~~I~aN~l~~~-~g~~tG~~~~-~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~A 496 (564)
.+++.+++.+|++..++++|.+.++ +|..+|.... ..+.+.+|...++++....+. .+++|||||.+|+++...+
T Consensus 112 ~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~~~~~~~~---~~~i~iGDs~~Di~aa~~~ 188 (224)
T PLN02954 112 QMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQHIKKKHGY---KTMVMIGDGATDLEARKPG 188 (224)
T ss_pred HHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHHHHHHcCC---CceEEEeCCHHHHHhhhcC
Confidence 9999999999886557999999986 4666664321 223456799999988876542 5799999999999998885
Q ss_pred CccEEE
Q 008479 497 DIGIVI 502 (564)
Q Consensus 497 d~giv~ 502 (564)
+..+++
T Consensus 189 ~~~~~~ 194 (224)
T PLN02954 189 GADLFI 194 (224)
T ss_pred CCCEEE
Confidence 554444
No 27
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.61 E-value=1.5e-14 Score=140.30 Aligned_cols=121 Identities=23% Similarity=0.281 Sum_probs=98.4
Q ss_pred cCCCHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecC-cccccc
Q 008479 372 KGINLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKE-SISTGE 450 (564)
Q Consensus 372 ~Gi~~~~i~~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~-g~~tG~ 450 (564)
.|++.+++....+.+.+.||+.++++.++++ ++++|+|++. ..+++.+++++|+ ..+++|.+.+++ +..+|.
T Consensus 53 ~~~~~~~i~~~~~~~~~~pg~~e~L~~L~~~----~~~~IvS~~~-~~~~~~~l~~~gl--~~~f~~~~~~~~~~~i~~~ 125 (205)
T PRK13582 53 HGLGLADIQEVIATLDPLPGAVEFLDWLRER----FQVVILSDTF-YEFAGPLMRQLGW--PTLFCHSLEVDEDGMITGY 125 (205)
T ss_pred cCCCHHHHHHHHHhCCCCCCHHHHHHHHHhc----CCEEEEeCCc-HHHHHHHHHHcCC--chhhcceEEECCCCeEECc
Confidence 3678999999999999999999999999864 6899999998 8999999999887 468899998864 555553
Q ss_pred ccccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCChh
Q 008479 451 IIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSS 507 (564)
Q Consensus 451 ~~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~~~ 507 (564)
- ...+.+|...++++... +..++|||||.+|++++..|++|++++++..
T Consensus 126 ~---~~~p~~k~~~l~~~~~~-----~~~~v~iGDs~~D~~~~~aa~~~v~~~~~~~ 174 (205)
T PRK13582 126 D---LRQPDGKRQAVKALKSL-----GYRVIAAGDSYNDTTMLGEADAGILFRPPAN 174 (205)
T ss_pred c---ccccchHHHHHHHHHHh-----CCeEEEEeCCHHHHHHHHhCCCCEEECCCHH
Confidence 2 12346788888766542 3689999999999999999999998876543
No 28
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=99.59 E-value=3.4e-15 Score=142.85 Aligned_cols=100 Identities=25% Similarity=0.319 Sum_probs=78.6
Q ss_pred CCCccHH----HHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecC--ccccccccccCCCCCc
Q 008479 387 SLQDGCT----TFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKE--SISTGEIIEKVESPID 460 (564)
Q Consensus 387 ~lr~G~~----efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~--g~~tG~~~~~~~~g~~ 460 (564)
.++||+. ++++.++++| ++++|||+|. ..+|+++++..|++...|+||++ +++ +..+|++.+..+ + +
T Consensus 85 ~~~~~~~~~~~e~i~~~~~~~---~~v~IvS~~~-~~~i~~~~~~~~i~~~~v~~~~~-~~~~~~~~~~~~~~~~~-~-~ 157 (192)
T PF12710_consen 85 KLFPGFIPDAMELIRELKDNG---IKVVIVSGSP-DEIIEPIAERLGIDDDNVIGNEL-FDNGGGIFTGRITGSNC-G-G 157 (192)
T ss_dssp HHCTTCHTTHHHHHHHHHHTT---SEEEEEEEEE-HHHHHHHHHHTTSSEGGEEEEEE-ECTTCCEEEEEEEEEEE-S-H
T ss_pred ccCcCchhhHHHHHHHHHHCC---CEEEEECCCc-HHHHHHHHHHcCCCceEEEEEee-eecccceeeeeECCCCC-C-c
Confidence 3455555 9999999988 9999999997 99999999999988778999999 754 345666655432 3 7
Q ss_pred hHHHHHHHH--HHhCCCCCccEEEEcCCccchhhhh
Q 008479 461 KVQAFNNTL--EKYGTDRKNLSVYIGDSVGDLLCLL 494 (564)
Q Consensus 461 K~~~l~~l~--~~~~~~~~~~viyiGDs~~Dl~~l~ 494 (564)
|..+++++. ...+. ...+++|||||.||++|++
T Consensus 158 K~~~l~~~~~~~~~~~-~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 158 KAEALKELYIRDEEDI-DPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp HHHHHHHHHHHHHHTH-TCCEEEEEESSGGGHHHHH
T ss_pred HHHHHHHHHHHhhcCC-CCCeEEEEECCHHHHHHhC
Confidence 999999992 11111 3578999999999999985
No 29
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=99.40 E-value=4.8e-12 Score=137.74 Aligned_cols=123 Identities=14% Similarity=0.103 Sum_probs=95.9
Q ss_pred hhhccCCCHHHHHHHhh----c---CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhh-cCCCceeEEeec
Q 008479 368 SGVLKGINLEDIKKAGE----R---LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSS-AGLNALNVHANE 439 (564)
Q Consensus 368 ~~~f~Gi~~~~i~~~~~----~---i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~-~g~~~~~I~aN~ 439 (564)
...|+|++.+++.+.++ + -.+++...+.+ +++| ..+|||++. ..+++++++. .|+ ..|+|++
T Consensus 84 ~~~f~G~~~~el~~~~r~~l~~f~~~~l~~~a~~~~---~~~g----~~vvVSASp-~~~Vepfa~~~LGi--d~VIgTe 153 (497)
T PLN02177 84 FIAFAGLKIRDIELVSRSVLPKFYAEDVHPETWRVF---NSFG----KRYIITASP-RIMVEPFVKTFLGA--DKVLGTE 153 (497)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHH---HhCC----CEEEEECCc-HHHHHHHHHHcCCC--CEEEecc
Confidence 34589999999977763 1 23666655544 4556 359999998 8899999976 565 6799999
Q ss_pred eee-cCcccccccccc-CCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCC
Q 008479 440 FSF-KESISTGEIIEK-VESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS 505 (564)
Q Consensus 440 l~~-~~g~~tG~~~~~-~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~ 505 (564)
++. .+|.+||.+.+. +|.|..|.+++++... .+ ...++||||.||++||..||.++++..+
T Consensus 154 Lev~~~G~~TG~i~g~~~c~Ge~Kv~rl~~~~g---~~--~~~~aYgDS~sD~plL~~a~e~y~V~~~ 216 (497)
T PLN02177 154 LEVSKSGRATGFMKKPGVLVGDHKRDAVLKEFG---DA--LPDLGLGDRETDHDFMSICKEGYMVPRT 216 (497)
T ss_pred cEECcCCEEeeeecCCCCCccHHHHHHHHHHhC---CC--CceEEEECCccHHHHHHhCCccEEeCCC
Confidence 999 489999999877 5789999999985443 11 1238999999999999999999999763
No 30
>PRK08238 hypothetical protein; Validated
Probab=99.16 E-value=3.2e-10 Score=123.37 Aligned_cols=116 Identities=18% Similarity=0.163 Sum_probs=94.4
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQA 464 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~ 464 (564)
.++++||+.++++.++++| .+++|+|++. ..+++.++++.|+ ...|+|.+.. .++.+..|...
T Consensus 70 ~lp~~pga~e~L~~lk~~G---~~v~LaTas~-~~~a~~i~~~lGl-Fd~Vigsd~~------------~~~kg~~K~~~ 132 (479)
T PRK08238 70 TLPYNEEVLDYLRAERAAG---RKLVLATASD-ERLAQAVAAHLGL-FDGVFASDGT------------TNLKGAAKAAA 132 (479)
T ss_pred hCCCChhHHHHHHHHHHCC---CEEEEEeCCC-HHHHHHHHHHcCC-CCEEEeCCCc------------cccCCchHHHH
Confidence 4579999999999999999 9999999997 8999999998875 3455655421 13445568877
Q ss_pred HHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCChhHHHHHHhhCCceeecC
Q 008479 465 FNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLRRVGSQFGVTFIPLY 523 (564)
Q Consensus 465 l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~~~L~~~~~~~gi~~~p~~ 523 (564)
+.+.... ..++|+|||.+|++++..|+.++++++++.|++.+++.||+..-+.
T Consensus 133 l~~~l~~------~~~~yvGDS~~Dlp~~~~A~~av~Vn~~~~l~~~a~~~~~~~~~~~ 185 (479)
T PRK08238 133 LVEAFGE------RGFDYAGNSAADLPVWAAARRAIVVGASPGVARAARALGPVERVFP 185 (479)
T ss_pred HHHHhCc------cCeeEecCCHHHHHHHHhCCCeEEECCCHHHHHHHHHcCCcceecC
Confidence 7765532 3478999999999999999999999999999999999999877664
No 31
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.07 E-value=1.1e-08 Score=100.38 Aligned_cols=101 Identities=13% Similarity=0.163 Sum_probs=73.4
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQA 464 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~ 464 (564)
...+.||+.++++.++++| +++.|+|++. ...++.+++++|+... + + .+.++. ....+.-|...
T Consensus 91 ~~~~~~g~~~~l~~l~~~g---~~~~i~S~~~-~~~~~~~l~~~~l~~~--f------~-~~~~~~---~~~~~kp~~~~ 154 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAG---YPLAVVTNKP-TPFVAPLLEALGIADY--F------S-VVIGGD---SLPNKKPDPAP 154 (226)
T ss_pred cCccCCCHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHcCCccC--c------c-EEEcCC---CCCCCCcChHH
Confidence 4779999999999999988 9999999997 7889999988876321 1 0 111111 01111224566
Q ss_pred HHHHHHHhCCCCCccEEEEcCCccchhhhhhcCc-cEEE
Q 008479 465 FNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI-GIVI 502 (564)
Q Consensus 465 l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~-giv~ 502 (564)
++..++..+. .+.++++||||.+|+.++..+|+ .|.+
T Consensus 155 ~~~~~~~~~~-~~~~~i~igD~~~Di~~a~~~g~~~i~v 192 (226)
T PRK13222 155 LLLACEKLGL-DPEEMLFVGDSRNDIQAARAAGCPSVGV 192 (226)
T ss_pred HHHHHHHcCC-ChhheEEECCCHHHHHHHHHCCCcEEEE
Confidence 7777777665 35789999999999999999998 4444
No 32
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.00 E-value=2.1e-09 Score=95.57 Aligned_cols=111 Identities=14% Similarity=0.041 Sum_probs=77.5
Q ss_pred hhcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCC--CceeEEeeceeecC-ccccccc-cccCCCC
Q 008479 383 GERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGL--NALNVHANEFSFKE-SISTGEI-IEKVESP 458 (564)
Q Consensus 383 ~~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~--~~~~I~aN~l~~~~-g~~tG~~-~~~~~~g 458 (564)
.....++||+.++++.++++| .+++|+|+++ ...++.+++..++ ....+++....... +...+.. ...+..+
T Consensus 20 ~~~~~~~~~~~~~l~~l~~~g---~~i~ivS~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (139)
T cd01427 20 IEELELYPGVKEALKELKEKG---IKLALATNKS-RREVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIG 95 (139)
T ss_pred cccCCcCcCHHHHHHHHHHCC---CeEEEEeCch-HHHHHHHHHHcCCchhhhheeccchhhhhcccccccccccccccC
Confidence 345788999999999999998 9999999998 8999999998775 22344544432211 1111111 1234444
Q ss_pred CchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCc
Q 008479 459 IDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI 498 (564)
Q Consensus 459 ~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~ 498 (564)
..|...++.+....+.. ...+++||||.+|+.++..++.
T Consensus 96 ~~~~~~~~~~~~~~~~~-~~~~~~igD~~~d~~~~~~~g~ 134 (139)
T cd01427 96 KPNPDKLLAALKLLGVD-PEEVLMVGDSLNDIEMAKAAGG 134 (139)
T ss_pred CCCHHHHHHHHHHcCCC-hhhEEEeCCCHHHHHHHHHcCC
Confidence 56667777777665542 5789999999999999999764
No 33
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.97 E-value=1.6e-08 Score=98.80 Aligned_cols=97 Identities=15% Similarity=0.190 Sum_probs=72.6
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCce--eEEeeceeecCccccccccccCCCCCchH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNAL--NVHANEFSFKESISTGEIIEKVESPIDKV 462 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~--~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 462 (564)
.+.+.||+.++++.++++| +++.|+|++. ...++..++..|+... .|++-+ - ...+-.|.
T Consensus 80 ~~~~~~g~~~~l~~L~~~g---~~~~i~S~~~-~~~~~~~l~~~gl~~~f~~i~~~~-----------~---~~~~Kp~p 141 (214)
T PRK13288 80 LVTEYETVYETLKTLKKQG---YKLGIVTTKM-RDTVEMGLKLTGLDEFFDVVITLD-----------D---VEHAKPDP 141 (214)
T ss_pred hcccCcCHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHcCChhceeEEEecC-----------c---CCCCCCCc
Confidence 4678999999999999998 9999999997 7889999998886321 122111 0 01122355
Q ss_pred HHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccE
Q 008479 463 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGI 500 (564)
Q Consensus 463 ~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gi 500 (564)
..+++.+...+. .+.+++|||||.+|+.+...|++..
T Consensus 142 ~~~~~~~~~~~~-~~~~~~~iGDs~~Di~aa~~aG~~~ 178 (214)
T PRK13288 142 EPVLKALELLGA-KPEEALMVGDNHHDILAGKNAGTKT 178 (214)
T ss_pred HHHHHHHHHcCC-CHHHEEEECCCHHHHHHHHHCCCeE
Confidence 677777776665 3578999999999999999999843
No 34
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=98.96 E-value=1.5e-08 Score=99.64 Aligned_cols=103 Identities=15% Similarity=0.126 Sum_probs=75.6
Q ss_pred hcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHH
Q 008479 384 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQ 463 (564)
Q Consensus 384 ~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~ 463 (564)
....+.||..++++.++++| ++++|+|++- ...++.+++..++. ..+..-+ ++. ....+-.+..
T Consensus 89 ~~~~~~~g~~~~l~~l~~~g---~~~~i~S~~~-~~~~~~~l~~~~l~--~~f~~~~-------~~~---~~~~~Kp~~~ 152 (222)
T PRK10826 89 ETRPLLPGVREALALCKAQG---LKIGLASASP-LHMLEAVLTMFDLR--DYFDALA-------SAE---KLPYSKPHPE 152 (222)
T ss_pred cCCCCCCCHHHHHHHHHHCC---CeEEEEeCCc-HHHHHHHHHhCcch--hcccEEE-------Ecc---cCCCCCCCHH
Confidence 35789999999999999999 9999999985 88899999887753 2222111 111 0111223456
Q ss_pred HHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEc
Q 008479 464 AFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG 503 (564)
Q Consensus 464 ~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~ 503 (564)
.++..++..+. .+.++++||||.+|+.++..||+..+..
T Consensus 153 ~~~~~~~~~~~-~~~~~~~igDs~~Di~aA~~aG~~~i~v 191 (222)
T PRK10826 153 VYLNCAAKLGV-DPLTCVALEDSFNGMIAAKAARMRSIVV 191 (222)
T ss_pred HHHHHHHHcCC-CHHHeEEEcCChhhHHHHHHcCCEEEEe
Confidence 77778877766 3578999999999999999999954443
No 35
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=98.96 E-value=6.5e-08 Score=93.29 Aligned_cols=106 Identities=14% Similarity=0.134 Sum_probs=76.1
Q ss_pred HHHHhhcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCc--eeEEeeceeecCccccccccccCC
Q 008479 379 IKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVE 456 (564)
Q Consensus 379 i~~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~ 456 (564)
+.+....+.+.||..++++.++++| ++++|+|.+. ...++..++..|+.. ..|++.+ . .|.
T Consensus 84 ~~~~~~~~~~~~~~~~~L~~L~~~g---~~~~i~Sn~~-~~~~~~~l~~~gl~~~fd~i~~s~-----~--~~~------ 146 (198)
T TIGR01428 84 LAEAYLRLPPHPDVPAGLRALKERG---YRLAILSNGS-PAMLKSLVKHAGLDDPFDAVLSAD-----A--VRA------ 146 (198)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHCCChhhhheeEehh-----h--cCC------
Confidence 3333456889999999999999998 9999999986 888999998877531 1233221 0 111
Q ss_pred CCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCcc-EEEc
Q 008479 457 SPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG-IVIG 503 (564)
Q Consensus 457 ~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g-iv~~ 503 (564)
.--+...++..+...+.. +.++++|||+.+|+.++..+|+. |.+.
T Consensus 147 -~KP~~~~~~~~~~~~~~~-p~~~~~vgD~~~Di~~A~~~G~~~i~v~ 192 (198)
T TIGR01428 147 -YKPAPQVYQLALEALGVP-PDEVLFVASNPWDLGGAKKFGFKTAWVN 192 (198)
T ss_pred -CCCCHHHHHHHHHHhCCC-hhhEEEEeCCHHHHHHHHHCCCcEEEec
Confidence 111345667777666653 57899999999999999999984 4443
No 36
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=98.96 E-value=2.2e-08 Score=97.51 Aligned_cols=98 Identities=16% Similarity=0.145 Sum_probs=72.9
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCce--eEEeeceeecCccccccccccCCCCCchH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNAL--NVHANEFSFKESISTGEIIEKVESPIDKV 462 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~--~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 462 (564)
...+.||+.++++.++++| +++.|+|++. ...++.++++.|+... .+++.+ ....+-.+.
T Consensus 83 ~~~~~~g~~~~L~~l~~~g---~~~~i~S~~~-~~~~~~~l~~~~l~~~f~~~~~~~--------------~~~~~Kp~p 144 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKG---LRLGLVTNKP-TPLARPLLELLGLAKYFSVLIGGD--------------SLAQRKPHP 144 (213)
T ss_pred cCccCCCHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHcCcHhhCcEEEecC--------------CCCCCCCCh
Confidence 4789999999999999988 9999999985 7889999998875311 111111 011112245
Q ss_pred HHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEE
Q 008479 463 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIV 501 (564)
Q Consensus 463 ~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv 501 (564)
..+...++..+.. +.+++|||||.+|+.++..|++.++
T Consensus 145 ~~~~~~~~~~~~~-~~~~~~igDs~~d~~aa~~aG~~~i 182 (213)
T TIGR01449 145 DPLLLAAERLGVA-PQQMVYVGDSRVDIQAARAAGCPSV 182 (213)
T ss_pred HHHHHHHHHcCCC-hhHeEEeCCCHHHHHHHHHCCCeEE
Confidence 6777777777653 5789999999999999999998544
No 37
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=98.92 E-value=2.6e-08 Score=97.68 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=73.7
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCC----ceeEEeeceeecCccccccccccCCCCCc
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLN----ALNVHANEFSFKESISTGEIIEKVESPID 460 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~----~~~I~aN~l~~~~g~~tG~~~~~~~~g~~ 460 (564)
...+.||+.++++.++++| +++.|+|++. ...++..|+..|+. ...++|.. .. ..+--
T Consensus 85 ~~~l~~G~~~~L~~L~~~g---~~~~ivT~~~-~~~~~~~l~~~~l~~~~~f~~i~~~~-----~~---------~~~KP 146 (220)
T TIGR03351 85 PPVALPGAEEAFRSLRSSG---IKVALTTGFD-RDTAERLLEKLGWTVGDDVDAVVCPS-----DV---------AAGRP 146 (220)
T ss_pred CCccCCCHHHHHHHHHHCC---CEEEEEeCCc-hHHHHHHHHHhhhhhhccCCEEEcCC-----cC---------CCCCC
Confidence 4689999999999999998 9999999886 88999999987753 11222221 11 01112
Q ss_pred hHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccE
Q 008479 461 KVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGI 500 (564)
Q Consensus 461 K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gi 500 (564)
+...+...+++.+...+.+++||||+.+|+.+...||+.+
T Consensus 147 ~p~~~~~a~~~~~~~~~~~~~~igD~~~Di~aa~~aG~~~ 186 (220)
T TIGR03351 147 APDLILRAMELTGVQDVQSVAVAGDTPNDLEAGINAGAGA 186 (220)
T ss_pred CHHHHHHHHHHcCCCChhHeEEeCCCHHHHHHHHHCCCCe
Confidence 4567777777766532478999999999999999999976
No 38
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=98.88 E-value=5.8e-08 Score=94.21 Aligned_cols=99 Identities=18% Similarity=0.221 Sum_probs=74.2
Q ss_pred hcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCc--eeEEeeceeecCccccccccccCCCCCch
Q 008479 384 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDK 461 (564)
Q Consensus 384 ~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K 461 (564)
..+.+.||+.+++++++++| ++++|+|++. ...++..++..|+.. ..+++.+ . ...+--|
T Consensus 72 ~~~~~~~g~~~~L~~L~~~g---~~~~i~Sn~~-~~~~~~~l~~~~l~~~f~~i~~~~----------~----~~~~KP~ 133 (205)
T TIGR01454 72 GEVEVFPGVPELLAELRADG---VGTAIATGKS-GPRARSLLEALGLLPLFDHVIGSD----------E----VPRPKPA 133 (205)
T ss_pred cccccCCCHHHHHHHHHHCC---CeEEEEeCCc-hHHHHHHHHHcCChhheeeEEecC----------c----CCCCCCC
Confidence 46899999999999999998 9999999985 788999998887632 1122110 0 1112235
Q ss_pred HHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEE
Q 008479 462 VQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIV 501 (564)
Q Consensus 462 ~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv 501 (564)
...+.+.+++.+.+ +.+++|||||.+|+.+++.+++.++
T Consensus 134 ~~~~~~~~~~~~~~-~~~~l~igD~~~Di~aA~~~Gi~~i 172 (205)
T TIGR01454 134 PDIVREALRLLDVP-PEDAVMVGDAVTDLASARAAGTATV 172 (205)
T ss_pred hHHHHHHHHHcCCC-hhheEEEcCCHHHHHHHHHcCCeEE
Confidence 67777777777653 5789999999999999999998544
No 39
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=98.87 E-value=5.1e-08 Score=98.47 Aligned_cols=97 Identities=19% Similarity=0.193 Sum_probs=71.6
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCc--eeEEeeceeecCccccccccccCCCCCchH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKV 462 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 462 (564)
...+.||+.++++.++++| +++.|+|.+- ...++.++++.|+.. ..|++.+ .+..+--+.
T Consensus 107 ~~~l~pg~~e~L~~L~~~g---~~l~I~Tn~~-~~~~~~~l~~~gl~~~Fd~ii~~~--------------d~~~~KP~P 168 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHE---IPIAVASTRP-RRYLERAIEAVGMEGFFSVVLAAE--------------DVYRGKPDP 168 (260)
T ss_pred CcccCCCHHHHHHHHHHCC---CEEEEEeCcC-HHHHHHHHHHcCCHhhCcEEEecc--------------cCCCCCCCH
Confidence 4678999999999999998 9999999984 888999999887632 1222211 011112234
Q ss_pred HHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccE
Q 008479 463 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGI 500 (564)
Q Consensus 463 ~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gi 500 (564)
..+...+...+. .+.+++|||||.+|+.+...|++.+
T Consensus 169 e~~~~a~~~l~~-~p~~~l~IgDs~~Di~aA~~aG~~~ 205 (260)
T PLN03243 169 EMFMYAAERLGF-IPERCIVFGNSNSSVEAAHDGCMKC 205 (260)
T ss_pred HHHHHHHHHhCC-ChHHeEEEcCCHHHHHHHHHcCCEE
Confidence 566666666665 3578999999999999999999843
No 40
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=98.87 E-value=4.1e-08 Score=99.86 Aligned_cols=96 Identities=21% Similarity=0.302 Sum_probs=72.5
Q ss_pred hcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHH
Q 008479 384 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQ 463 (564)
Q Consensus 384 ~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~ 463 (564)
..+.+.||+.++++.++++| +++.|+|.+. ...++.++++.|+... + .. +.++... ..|..
T Consensus 139 ~~~~l~pg~~e~L~~L~~~g---i~laIvSn~~-~~~~~~~L~~~gl~~~--F----~~---vi~~~~~------~~k~~ 199 (273)
T PRK13225 139 PALQLFPGVADLLAQLRSRS---LCLGILSSNS-RQNIEAFLQRQGLRSL--F----SV---VQAGTPI------LSKRR 199 (273)
T ss_pred ccCCcCCCHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHcCChhh--e----EE---EEecCCC------CCCHH
Confidence 45788999999999999998 9999999996 8999999999886321 1 11 1112110 12556
Q ss_pred HHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCcc
Q 008479 464 AFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG 499 (564)
Q Consensus 464 ~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g 499 (564)
.+..++...+.. +.+++|||||.+|+.+...|++.
T Consensus 200 ~~~~~l~~~~~~-p~~~l~IGDs~~Di~aA~~AG~~ 234 (273)
T PRK13225 200 ALSQLVAREGWQ-PAAVMYVGDETRDVEAARQVGLI 234 (273)
T ss_pred HHHHHHHHhCcC-hhHEEEECCCHHHHHHHHHCCCe
Confidence 777777766553 47899999999999999999983
No 41
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=98.85 E-value=1.4e-07 Score=93.38 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=71.5
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCce--eEEeeceeecCccccccccccCCCCCchH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNAL--NVHANEFSFKESISTGEIIEKVESPIDKV 462 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~--~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 462 (564)
...+.||+.++++.++++| +++.|+|.+- ..+++.++++.|+... .|++.+ . .+ .+-.+.
T Consensus 93 ~~~~~pg~~~~L~~L~~~g---~~l~i~Tn~~-~~~~~~~l~~~~l~~~f~~i~~~~-----~--~~-------~~KP~p 154 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAG---CVWGIVTNKP-EYLARLILPQLGWEQRCAVLIGGD-----T--LA-------ERKPHP 154 (229)
T ss_pred cCeeCCCHHHHHHHHHHCC---CeEEEECCCC-HHHHHHHHHHcCchhcccEEEecC-----c--CC-------CCCCCH
Confidence 5789999999999999998 9999999884 7888888888775321 111111 0 01 112244
Q ss_pred HHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEE
Q 008479 463 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIV 501 (564)
Q Consensus 463 ~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv 501 (564)
..+...++..+. .+.++++||||.+|+.+...|++..+
T Consensus 155 ~~~~~~~~~l~~-~p~~~l~IGDs~~Di~aA~~aG~~~i 192 (229)
T PRK13226 155 LPLLVAAERIGV-APTDCVYVGDDERDILAARAAGMPSV 192 (229)
T ss_pred HHHHHHHHHhCC-ChhhEEEeCCCHHHHHHHHHCCCcEE
Confidence 667777777665 35889999999999999999998533
No 42
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=98.82 E-value=9e-08 Score=100.80 Aligned_cols=98 Identities=14% Similarity=0.141 Sum_probs=72.6
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCc--eeEEeeceeecCccccccccccCCCCCchH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKV 462 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 462 (564)
...+.||+.++++.|+++| +++.|+|.+- ...++.++++.|+.. ..|++-+ . ...+--+.
T Consensus 214 ~~~l~pGa~ElL~~Lk~~G---iklaIaSn~~-~~~~~~~L~~lgL~~yFd~Iv~sd-----d---------v~~~KP~P 275 (381)
T PLN02575 214 IYRLRTGSQEFVNVLMNYK---IPMALVSTRP-RKTLENAIGSIGIRGFFSVIVAAE-----D---------VYRGKPDP 275 (381)
T ss_pred CCCcCcCHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHcCCHHHceEEEecC-----c---------CCCCCCCH
Confidence 4678999999999999998 9999999986 889999999888632 1222211 0 00112244
Q ss_pred HHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEE
Q 008479 463 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIV 501 (564)
Q Consensus 463 ~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv 501 (564)
..+.......+. .+.++++||||.+|+.++..|++.++
T Consensus 276 eifl~A~~~lgl-~Peecl~IGDS~~DIeAAk~AGm~~I 313 (381)
T PLN02575 276 EMFIYAAQLLNF-IPERCIVFGNSNQTVEAAHDARMKCV 313 (381)
T ss_pred HHHHHHHHHcCC-CcccEEEEcCCHHHHHHHHHcCCEEE
Confidence 566666666665 35789999999999999999999433
No 43
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=98.81 E-value=9e-08 Score=96.12 Aligned_cols=101 Identities=14% Similarity=0.038 Sum_probs=70.8
Q ss_pred hcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHH
Q 008479 384 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQ 463 (564)
Q Consensus 384 ~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~ 463 (564)
+...+.||+.++++.++++| +++.|+|++- ...++.++++.|+... + .+.+.++. ....+--+..
T Consensus 96 ~~~~~~pg~~e~L~~L~~~g---~~l~IvT~~~-~~~~~~~l~~~gl~~~--f------~d~ii~~~---~~~~~KP~p~ 160 (253)
T TIGR01422 96 EYSSPIPGVIEVIAYLRARG---IKIGSTTGYT-REMMDVVAPEAALQGY--R------PDYNVTTD---DVPAGRPAPW 160 (253)
T ss_pred hcCccCCCHHHHHHHHHHCC---CeEEEECCCc-HHHHHHHHHHHHhcCC--C------CceEEccc---cCCCCCCCHH
Confidence 35789999999999999998 9999999985 8899999988775321 0 01111111 0001112345
Q ss_pred HHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCcc
Q 008479 464 AFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG 499 (564)
Q Consensus 464 ~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g 499 (564)
.+...+...+...+.+++|||||.+|+.+...|++.
T Consensus 161 ~~~~a~~~l~~~~~~~~l~IGDs~~Di~aA~~aGi~ 196 (253)
T TIGR01422 161 MALKNAIELGVYDVAACVKVGDTVPDIEEGRNAGMW 196 (253)
T ss_pred HHHHHHHHcCCCCchheEEECCcHHHHHHHHHCCCe
Confidence 566666666542257899999999999999999984
No 44
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=98.78 E-value=1.5e-07 Score=92.30 Aligned_cols=100 Identities=14% Similarity=0.189 Sum_probs=72.2
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCc--eeEEeeceeecCccccccccccCCCCCchH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKV 462 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 462 (564)
.+.+.||+.++++.++++| +++.|+|.+. ...++..+++.|+.. ..|++.+ ..| .+-.+.
T Consensus 92 ~~~~~~g~~~~L~~L~~~g---~~~~i~Tn~~-~~~~~~~l~~~~l~~~f~~i~~~~-------~~~-------~~KP~~ 153 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESG---YRLGIITDGL-PVKQWEKLERLGVRDFFDAVITSE-------EEG-------VEKPHP 153 (221)
T ss_pred hCCCCCCHHHHHHHHHHCC---CEEEEEeCCc-hHHHHHHHHhCChHHhccEEEEec-------cCC-------CCCCCH
Confidence 5789999999999999998 9999999996 677888888877532 1122211 011 111234
Q ss_pred HHHHHHHHHhCCCCCccEEEEcCCc-cchhhhhhcCc-cEEEc
Q 008479 463 QAFNNTLEKYGTDRKNLSVYIGDSV-GDLLCLLEADI-GIVIG 503 (564)
Q Consensus 463 ~~l~~l~~~~~~~~~~~viyiGDs~-~Dl~~l~~Ad~-giv~~ 503 (564)
..++..++..+.+ +.++++||||. +|+.+...+++ .|.+.
T Consensus 154 ~~~~~~~~~~~~~-~~~~~~igDs~~~di~~A~~aG~~~i~~~ 195 (221)
T TIGR02253 154 KIFYAALKRLGVK-PEEAVMVGDRLDKDIKGAKNLGMKTVWIN 195 (221)
T ss_pred HHHHHHHHHcCCC-hhhEEEECCChHHHHHHHHHCCCEEEEEC
Confidence 5667777776653 47899999998 99999999998 44443
No 45
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=98.77 E-value=2.3e-07 Score=94.33 Aligned_cols=98 Identities=13% Similarity=0.169 Sum_probs=70.8
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQA 464 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~ 464 (564)
...+.||+.++++.++++| ++++|+|++- ...++.++.+.++... + + .+.++.- ...+-.+...
T Consensus 99 ~~~~~~g~~e~L~~Lk~~g---~~l~ivTn~~-~~~~~~~l~~~~i~~~--f-~------~i~~~d~---~~~~Kp~p~~ 162 (272)
T PRK13223 99 LTVVYPGVRDTLKWLKKQG---VEMALITNKP-ERFVAPLLDQMKIGRY--F-R------WIIGGDT---LPQKKPDPAA 162 (272)
T ss_pred CCccCCCHHHHHHHHHHCC---CeEEEEECCc-HHHHHHHHHHcCcHhh--C-e------EEEecCC---CCCCCCCcHH
Confidence 4678999999999999988 9999999885 7889999988775321 0 0 1111110 1112234466
Q ss_pred HHHHHHHhCCCCCccEEEEcCCccchhhhhhcCcc
Q 008479 465 FNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG 499 (564)
Q Consensus 465 l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g 499 (564)
++.++...+.+ +.++++|||+.+|+.++..+++.
T Consensus 163 ~~~~~~~~g~~-~~~~l~IGD~~~Di~aA~~aGi~ 196 (272)
T PRK13223 163 LLFVMKMAGVP-PSQSLFVGDSRSDVLAAKAAGVQ 196 (272)
T ss_pred HHHHHHHhCCC-hhHEEEECCCHHHHHHHHHCCCe
Confidence 77777776653 57899999999999999999983
No 46
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=98.76 E-value=3.4e-07 Score=92.77 Aligned_cols=101 Identities=10% Similarity=0.015 Sum_probs=70.5
Q ss_pred hcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHH
Q 008479 384 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQ 463 (564)
Q Consensus 384 ~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~ 463 (564)
+.+.+.||+.++++.++++| +++.|+|++. ...++.+++..++... + + +.+.++. ....+--+..
T Consensus 98 ~~~~~~pg~~elL~~L~~~g---~~l~I~T~~~-~~~~~~~l~~~~l~~~--~-----~-d~i~~~~---~~~~~KP~p~ 162 (267)
T PRK13478 98 DYATPIPGVLEVIAALRARG---IKIGSTTGYT-REMMDVVVPLAAAQGY--R-----P-DHVVTTD---DVPAGRPYPW 162 (267)
T ss_pred hcCCCCCCHHHHHHHHHHCC---CEEEEEcCCc-HHHHHHHHHHHhhcCC--C-----c-eEEEcCC---cCCCCCCChH
Confidence 35788999999999999998 9999999886 7888888887654211 0 0 1111111 0011112345
Q ss_pred HHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCcc
Q 008479 464 AFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG 499 (564)
Q Consensus 464 ~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g 499 (564)
.+...+...+......++|||||.+|+.+...|++.
T Consensus 163 ~~~~a~~~l~~~~~~e~l~IGDs~~Di~aA~~aG~~ 198 (267)
T PRK13478 163 MALKNAIELGVYDVAACVKVDDTVPGIEEGLNAGMW 198 (267)
T ss_pred HHHHHHHHcCCCCCcceEEEcCcHHHHHHHHHCCCE
Confidence 667777766653346899999999999999999983
No 47
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=98.74 E-value=1.6e-07 Score=94.12 Aligned_cols=98 Identities=15% Similarity=0.114 Sum_probs=72.1
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCc--eeEEeeceeecCccccccccccCCCCCchH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKV 462 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 462 (564)
.+.+.||+.++++.++++| +++.|+|.+. ...++..+++.|+.. ..|++.+- . ..+--+.
T Consensus 106 ~~~l~pgv~e~L~~L~~~g---~~l~I~Tn~~-~~~~~~~l~~~gl~~~Fd~iv~~~~-----~---------~~~KP~p 167 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRG---LKRAAVTNAP-RENAELMISLLGLSDFFQAVIIGSE-----C---------EHAKPHP 167 (248)
T ss_pred cCCcCccHHHHHHHHHHcC---CeEEEEeCCC-HHHHHHHHHHcCChhhCcEEEecCc-----C---------CCCCCCh
Confidence 5789999999999999998 9999999996 899999999888632 12222220 0 0111233
Q ss_pred HHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEE
Q 008479 463 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIV 501 (564)
Q Consensus 463 ~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv 501 (564)
..+...++..+. .+.+++||||+.+|+.+...|++.++
T Consensus 168 ~~~~~a~~~~~~-~~~~~l~vgDs~~Di~aA~~aGi~~i 205 (248)
T PLN02770 168 DPYLKALEVLKV-SKDHTFVFEDSVSGIKAGVAAGMPVV 205 (248)
T ss_pred HHHHHHHHHhCC-ChhHEEEEcCCHHHHHHHHHCCCEEE
Confidence 556666666655 35789999999999999999998433
No 48
>PRK11587 putative phosphatase; Provisional
Probab=98.74 E-value=3.8e-07 Score=89.50 Aligned_cols=101 Identities=17% Similarity=0.149 Sum_probs=69.4
Q ss_pred hcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCce-eEEeeceeecCccccccccccCCCCCchH
Q 008479 384 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNAL-NVHANEFSFKESISTGEIIEKVESPIDKV 462 (564)
Q Consensus 384 ~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~-~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 462 (564)
..+.+.||+.++++.++++| +++.|+|.+- ...++..+...++... .|++.+ .+ ...--+.
T Consensus 80 ~~~~~~pg~~e~L~~L~~~g---~~~~ivTn~~-~~~~~~~l~~~~l~~~~~i~~~~----------~~----~~~KP~p 141 (218)
T PRK11587 80 EGITALPGAIALLNHLNKLG---IPWAIVTSGS-VPVASARHKAAGLPAPEVFVTAE----------RV----KRGKPEP 141 (218)
T ss_pred cCceeCcCHHHHHHHHHHcC---CcEEEEcCCC-chHHHHHHHhcCCCCccEEEEHH----------Hh----cCCCCCc
Confidence 46789999999999999999 9999999985 5666777776665321 122211 00 0011123
Q ss_pred HHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCcc-EEEc
Q 008479 463 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG-IVIG 503 (564)
Q Consensus 463 ~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g-iv~~ 503 (564)
..+.......+. .+.+++|||||.+|+.+...|++. |.+.
T Consensus 142 ~~~~~~~~~~g~-~p~~~l~igDs~~di~aA~~aG~~~i~v~ 182 (218)
T PRK11587 142 DAYLLGAQLLGL-APQECVVVEDAPAGVLSGLAAGCHVIAVN 182 (218)
T ss_pred HHHHHHHHHcCC-CcccEEEEecchhhhHHHHHCCCEEEEEC
Confidence 455555555555 358899999999999999999984 4443
No 49
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=98.72 E-value=3.6e-07 Score=86.79 Aligned_cols=95 Identities=15% Similarity=0.129 Sum_probs=67.1
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCc--eeEEeeceeecCccccccccccCCCCCchH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKV 462 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 462 (564)
.+.+.||+.++++.++++| +++.|+|++ ..++.+++..|+.. ..+++.. ..+ ....+.
T Consensus 86 ~~~~~~g~~~~l~~l~~~g---~~i~i~S~~---~~~~~~l~~~~l~~~f~~v~~~~-------~~~-------~~kp~~ 145 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKKG---IAVGLGSSS---KNADRILAKLGLTDYFDAIVDAD-------EVK-------EGKPHP 145 (185)
T ss_pred CCCCCcCHHHHHHHHHHcC---CeEEEEeCc---hhHHHHHHHcChHHHCCEeeehh-------hCC-------CCCCCh
Confidence 4789999999999999988 999999986 45788888877531 1222211 000 111233
Q ss_pred HHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccE
Q 008479 463 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGI 500 (564)
Q Consensus 463 ~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gi 500 (564)
..+...++..+. .+.++++||||.+|+.+...+++..
T Consensus 146 ~~~~~~~~~~~~-~~~~~v~IgD~~~di~aA~~~G~~~ 182 (185)
T TIGR02009 146 ETFLLAAELLGV-SPNECVVFEDALAGVQAARAAGMFA 182 (185)
T ss_pred HHHHHHHHHcCC-CHHHeEEEeCcHhhHHHHHHCCCeE
Confidence 455566666555 3578999999999999999999753
No 50
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=98.72 E-value=1.2e-06 Score=84.83 Aligned_cols=94 Identities=18% Similarity=0.194 Sum_probs=65.0
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCc--eeEEeeceeecCccccccccccCCCCCchHH
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKVQ 463 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~ 463 (564)
..+.||+.++++.++++| +++.|+|.+- .. ++..++..|+.. ..|++.. .+| .+--+..
T Consensus 104 ~~~~~g~~~~l~~L~~~g---~~~~i~Sn~~-~~-~~~~l~~~~l~~~fd~i~~s~-------~~~-------~~KP~~~ 164 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERG---LILGVISNFD-SR-LRGLLEALGLLEYFDFVVTSY-------EVG-------AEKPDPK 164 (203)
T ss_pred ceeCcCHHHHHHHHHHCC---CEEEEEeCCc-hh-HHHHHHHCCcHHhcceEEeec-------ccC-------CCCCCHH
Confidence 468899999999999988 9999999763 43 577888776521 1222211 011 1111335
Q ss_pred HHHHHHHHhCCCCCccEEEEcCCc-cchhhhhhcCcc
Q 008479 464 AFNNTLEKYGTDRKNLSVYIGDSV-GDLLCLLEADIG 499 (564)
Q Consensus 464 ~l~~l~~~~~~~~~~~viyiGDs~-~Dl~~l~~Ad~g 499 (564)
.++..+...+. .+.++++||||. +|+.+...+|+.
T Consensus 165 ~~~~~~~~~~~-~~~~~~~IgD~~~~Di~~A~~aG~~ 200 (203)
T TIGR02252 165 IFQEALERAGI-SPEEALHIGDSLRNDYQGARAAGWR 200 (203)
T ss_pred HHHHHHHHcCC-ChhHEEEECCCchHHHHHHHHcCCe
Confidence 66666666665 358899999997 899999999863
No 51
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=98.67 E-value=5e-07 Score=84.04 Aligned_cols=97 Identities=21% Similarity=0.293 Sum_probs=74.1
Q ss_pred hcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCC--ceeEEeeceeecCccccccccccCCCCCch
Q 008479 384 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLN--ALNVHANEFSFKESISTGEIIEKVESPIDK 461 (564)
Q Consensus 384 ~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~--~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K 461 (564)
....+.||..++++.++++| ++++|+|.+- ...++..++.+|+. ...|++.. .....-.+
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~---~~~~i~Sn~~-~~~~~~~l~~~~~~~~f~~i~~~~--------------~~~~~Kp~ 135 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKG---IPLVIVSNGS-RERIERVLERLGLDDYFDEIISSD--------------DVGSRKPD 135 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTT---SEEEEEESSE-HHHHHHHHHHTTHGGGCSEEEEGG--------------GSSSSTTS
T ss_pred hccchhhhhhhhhhhccccc---ceeEEeecCC-cccccccccccccccccccccccc--------------hhhhhhhH
Confidence 47899999999999999888 9999999884 89999999988753 11222221 01111234
Q ss_pred HHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCcc
Q 008479 462 VQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG 499 (564)
Q Consensus 462 ~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g 499 (564)
...++..++..+. .+.++++|||+..|+.+...+|+.
T Consensus 136 ~~~~~~~~~~~~~-~p~~~~~vgD~~~d~~~A~~~G~~ 172 (176)
T PF13419_consen 136 PDAYRRALEKLGI-PPEEILFVGDSPSDVEAAKEAGIK 172 (176)
T ss_dssp HHHHHHHHHHHTS-SGGGEEEEESSHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHcCC-CcceEEEEeCCHHHHHHHHHcCCe
Confidence 5778888877776 358999999999999999999974
No 52
>PRK09449 dUMP phosphatase; Provisional
Probab=98.67 E-value=4.3e-07 Score=89.24 Aligned_cols=99 Identities=17% Similarity=0.314 Sum_probs=70.2
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCc--eeEEeeceeecCccccccccccCCCCCchH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKV 462 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 462 (564)
.+.+.||+.++++.++ ++ +++.|+|.+. ...++..+++.|+.. ..|++-+ ..| ..--+.
T Consensus 93 ~~~~~~g~~~~L~~L~-~~---~~~~i~Tn~~-~~~~~~~l~~~~l~~~fd~v~~~~-------~~~-------~~KP~p 153 (224)
T PRK09449 93 ICTPLPGAVELLNALR-GK---VKMGIITNGF-TELQQVRLERTGLRDYFDLLVISE-------QVG-------VAKPDV 153 (224)
T ss_pred cCccCccHHHHHHHHH-hC---CeEEEEeCCc-HHHHHHHHHhCChHHHcCEEEEEC-------ccC-------CCCCCH
Confidence 4779999999999999 56 8999999997 788888898877531 1122111 011 111234
Q ss_pred HHHHHHHHHhCCCCCccEEEEcCCc-cchhhhhhcCcc-EEE
Q 008479 463 QAFNNTLEKYGTDRKNLSVYIGDSV-GDLLCLLEADIG-IVI 502 (564)
Q Consensus 463 ~~l~~l~~~~~~~~~~~viyiGDs~-~Dl~~l~~Ad~g-iv~ 502 (564)
..+...++..+......+++||||. +|+.+...|++. |.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~vgD~~~~Di~~A~~aG~~~i~~ 195 (224)
T PRK09449 154 AIFDYALEQMGNPDRSRVLMVGDNLHSDILGGINAGIDTCWL 195 (224)
T ss_pred HHHHHHHHHcCCCCcccEEEEcCCcHHHHHHHHHCCCcEEEE
Confidence 6677777766643336899999998 799999999984 444
No 53
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=98.67 E-value=6.4e-07 Score=88.48 Aligned_cols=99 Identities=17% Similarity=0.237 Sum_probs=73.0
Q ss_pred hhcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCc--eeEEeeceeecCccccccccccCCCCCc
Q 008479 383 GERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPID 460 (564)
Q Consensus 383 ~~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~ 460 (564)
...+.+.||+.++++.++++| +++.|+|.+- ...++..+++.|+.. ..|++.+- .| .+--
T Consensus 89 ~~~~~~~~g~~e~L~~Lk~~g---~~~~i~Tn~~-~~~~~~~l~~~~l~~~fd~iv~s~~-------~~-------~~KP 150 (224)
T PRK14988 89 GPRAVLREDTVPFLEALKASG---KRRILLTNAH-PHNLAVKLEHTGLDAHLDLLLSTHT-------FG-------YPKE 150 (224)
T ss_pred hccCCcCCCHHHHHHHHHhCC---CeEEEEeCcC-HHHHHHHHHHCCcHHHCCEEEEeee-------CC-------CCCC
Confidence 356889999999999999998 9999999984 888988888877521 12333220 01 1111
Q ss_pred hHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccE
Q 008479 461 KVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGI 500 (564)
Q Consensus 461 K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gi 500 (564)
+...+....+..+. .+.+++|||||.+|+.+...||+..
T Consensus 151 ~p~~~~~~~~~~~~-~p~~~l~igDs~~di~aA~~aG~~~ 189 (224)
T PRK14988 151 DQRLWQAVAEHTGL-KAERTLFIDDSEPILDAAAQFGIRY 189 (224)
T ss_pred CHHHHHHHHHHcCC-ChHHEEEEcCCHHHHHHHHHcCCeE
Confidence 34666666666665 3578999999999999999999953
No 54
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=98.65 E-value=4.1e-07 Score=83.93 Aligned_cols=91 Identities=12% Similarity=0.144 Sum_probs=65.1
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCc--eeEEeeceeecCccccccccccCCCCCchH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKV 462 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 462 (564)
.....||..++++.++++| +++.|+|.+. ...+...++.+ +.. ..|++.+ . .. +-.+.
T Consensus 62 ~~~~~~g~~e~l~~L~~~g---~~~~i~T~~~-~~~~~~~~~~~-l~~~f~~i~~~~-----~---------~~-~Kp~~ 121 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAG---IKLGIISNGS-LRAQKLLLRKH-LGDYFDLILGSD-----E---------FG-AKPEP 121 (154)
T ss_pred hheeccCHHHHHHHHHHCc---CeEEEEeCCc-hHHHHHHHHHH-HHhcCcEEEecC-----C---------CC-CCcCH
Confidence 4556699999999999988 9999999997 77888887764 211 1122211 1 11 12245
Q ss_pred HHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcC
Q 008479 463 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEAD 497 (564)
Q Consensus 463 ~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad 497 (564)
..+...+.+.+.+ + ++++|||+.+|+.+.+.|+
T Consensus 122 ~~~~~~~~~~~~~-~-~~l~iGDs~~Di~aa~~aG 154 (154)
T TIGR01549 122 EIFLAALESLGLP-P-EVLHVGDNLNDIEGARNAG 154 (154)
T ss_pred HHHHHHHHHcCCC-C-CEEEEeCCHHHHHHHHHcc
Confidence 7777777777663 4 8999999999999998875
No 55
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=98.61 E-value=7.4e-07 Score=84.61 Aligned_cols=96 Identities=14% Similarity=0.152 Sum_probs=65.4
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQA 464 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~ 464 (564)
...+.||+.++++.++++| +++.|+|.+.. .+..++..|+... + . .+.++. .....--+...
T Consensus 85 ~~~~~pg~~~~L~~L~~~g---~~~~i~s~~~~---~~~~l~~~~l~~~--f----~---~~~~~~---~~~~~kp~p~~ 146 (185)
T TIGR01990 85 PADVLPGIKNLLDDLKKNN---IKIALASASKN---APTVLEKLGLIDY--F----D---AIVDPA---EIKKGKPDPEI 146 (185)
T ss_pred CcccCccHHHHHHHHHHCC---CeEEEEeCCcc---HHHHHHhcCcHhh--C----c---EEEehh---hcCCCCCChHH
Confidence 3578999999999999998 99999998753 3456777665211 1 0 111111 00111224566
Q ss_pred HHHHHHHhCCCCCccEEEEcCCccchhhhhhcCcc
Q 008479 465 FNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG 499 (564)
Q Consensus 465 l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g 499 (564)
++..++..+. .+.++++|||+.+|+.+...+++.
T Consensus 147 ~~~~~~~~~~-~~~~~v~vgD~~~di~aA~~aG~~ 180 (185)
T TIGR01990 147 FLAAAEGLGV-SPSECIGIEDAQAGIEAIKAAGMF 180 (185)
T ss_pred HHHHHHHcCC-CHHHeEEEecCHHHHHHHHHcCCE
Confidence 6667766655 357899999999999999999984
No 56
>PRK05157 pyrroloquinoline quinone biosynthesis protein PqqC; Provisional
Probab=98.60 E-value=7.4e-06 Score=80.86 Aligned_cols=204 Identities=12% Similarity=0.047 Sum_probs=137.9
Q ss_pred CCCcchHHHHHHHHhHHhHHHhhcChHHHHhhcCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 008479 10 SPEEEGLARRLWIKFKRESVFAMYSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQAYELAEECADDDDAKLSISELRK 89 (564)
Q Consensus 10 ~~~~~~~~~~lw~~~~~~~~~~~~hpFv~~la~GtL~~~~f~~Yl~QD~~YL~~~~r~~~~~~~~a~~~~~~~~l~~~~~ 89 (564)
+-....|.+.|-... -...++|||-+.+.+|+|+++.++-|..|=|+|-..+.+..+-++++++|.+.+..+.+.+
T Consensus 8 ~~s~~eF~~~L~~~~---~~yh~~HPF~~~~~~Gklt~~qlq~wa~nrYyyq~~~P~kdaaI~S~c~D~e~Rr~w~~ri- 83 (246)
T PRK05157 8 LLSPEEFEAALRAIG---ARYHIHHPFHRLLHEGKLTREQIQAWVANRFYYQINIPLKDAAILSNCPDRETRREWRQRI- 83 (246)
T ss_pred CCCHHHHHHHHHHHH---HhhcccChHHHHHHcCCCCHHHHHHHHHHhchhhccchHHHHHHHHcCCCHHHHHHHHHHH-
Confidence 334556777765543 2233589999999999999999999999999999999999999999999998866543332
Q ss_pred HHHHH--------HHHHHHHHHHhCCCccc--cc-CCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCchhhhhhHHHHHH
Q 008479 90 GVLEE--------LKMHDSFVKEWGTDLAK--MA-TVNSATVKYTEFLLATASGKVEGVKGPGKLATPFEKTKVAAYTLG 158 (564)
Q Consensus 90 ~i~~E--------~~~h~~~~~~~gi~~~~--~~-~~~pa~~~Y~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~l~ 158 (564)
+.+| .++...+.+.+|++.++ +. ...|+|+..++-....+.... |. ++++
T Consensus 84 -~d~dG~~~~~ghie~Wlrf~ealGl~re~v~s~~~~lP~tr~aVday~~~~r~~~------------~~------eava 144 (246)
T PRK05157 84 -LDHDGDGGGEGGIERWLRLGEAVGLDRDYVLSLRGVLPGVRFAVDAYVNFARRAP------------WL------EAVA 144 (246)
T ss_pred -HHhcCCCCCCCcHHHHHHHHHHcCCCHHHHhccccCChHHHHHHHHHHHHHccCC------------HH------HHHH
Confidence 2222 57888999999999873 33 378999999999888885332 33 5677
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcccccccccccCChhHHHH-------HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 008479 159 AMSPCMRLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQAS-------ALQNEDLLDKLSVSLTGEELDIIEKLYHQ 231 (564)
Q Consensus 159 Al~pC~~~Y~~i~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~-------v~~l~~~ld~~~~~~~~~~~~~~~~~F~~ 231 (564)
|++. +.-=-.|.+...... ..+..|++.=+=.-|... +..-.+++-+.+ .++++++++.++-+.
T Consensus 145 s~lt-E~~~P~I~~~ri~gl------~~~Y~~~~~e~l~yF~~h~~~a~~Dvehal~~~l~~~--~t~e~q~~al~al~~ 215 (246)
T PRK05157 145 SSLT-ELFAPQIHQERLAGW------PEHYPWIDPEGLAYFRSRLTQAPRDVEHGLAYVLDHA--TTREQQERALEALQF 215 (246)
T ss_pred HHHH-HHhhhHHHHHHHHHH------HHHCCCCCHHHHHHHHHHhhccchhHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Confidence 7766 443334433222111 112246552111112211 122222333332 377899999999999
Q ss_pred HHHHHHHhhccCCC
Q 008479 232 AMKLEVEFFCAQPL 245 (564)
Q Consensus 232 ~~~lE~~Fw~~a~~ 245 (564)
.|..=+.|+|+...
T Consensus 216 k~d~Lw~~LDai~~ 229 (246)
T PRK05157 216 KLDVLWSMLDALYM 229 (246)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998743
No 57
>PLN02940 riboflavin kinase
Probab=98.60 E-value=6.3e-07 Score=95.55 Aligned_cols=99 Identities=13% Similarity=0.170 Sum_probs=71.4
Q ss_pred hcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHh-hcCCCc--eeEEeeceeecCccccccccccCCCCCc
Q 008479 384 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFS-SAGLNA--LNVHANEFSFKESISTGEIIEKVESPID 460 (564)
Q Consensus 384 ~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~-~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~ 460 (564)
+++.+.||+.++++.++++| +++.|+|.+. ...++..+. ..|+.. ..|+|-+ .+..+--
T Consensus 90 ~~~~l~pGv~elL~~Lk~~g---~~l~IvTn~~-~~~~~~~l~~~~gl~~~Fd~ii~~d--------------~v~~~KP 151 (382)
T PLN02940 90 CNIKALPGANRLIKHLKSHG---VPMALASNSP-RANIEAKISCHQGWKESFSVIVGGD--------------EVEKGKP 151 (382)
T ss_pred ccCCCCcCHHHHHHHHHHCC---CcEEEEeCCc-HHHHHHHHHhccChHhhCCEEEehh--------------hcCCCCC
Confidence 46789999999999999998 9999999986 778888776 455421 1222211 0111122
Q ss_pred hHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEE
Q 008479 461 KVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIV 501 (564)
Q Consensus 461 K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv 501 (564)
+.+.+...++..+.. +.++++||||.+|+.++..|++.++
T Consensus 152 ~p~~~~~a~~~lgv~-p~~~l~VGDs~~Di~aA~~aGi~~I 191 (382)
T PLN02940 152 SPDIFLEAAKRLNVE-PSNCLVIEDSLPGVMAGKAAGMEVI 191 (382)
T ss_pred CHHHHHHHHHHcCCC-hhHEEEEeCCHHHHHHHHHcCCEEE
Confidence 456677777776653 5789999999999999999999533
No 58
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=98.59 E-value=1.8e-06 Score=83.52 Aligned_cols=109 Identities=12% Similarity=0.113 Sum_probs=73.0
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhc-CCCc--eeEEeeceeecCccccccccccCCCCCchH
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSA-GLNA--LNVHANEFSFKESISTGEIIEKVESPIDKV 462 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~-g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 462 (564)
..+.||+.++++.++++| ++++|+|.+. ...+..++... ++.. ..|++.. .+...--+.
T Consensus 83 ~~~~~g~~e~L~~l~~~g---~~~~i~Sn~~-~~~~~~~~~~~~~l~~~fd~v~~s~--------------~~~~~KP~p 144 (199)
T PRK09456 83 VALRPEVIAIMHKLREQG---HRVVVLSNTN-RLHTTFWPEEYPEVRAAADHIYLSQ--------------DLGMRKPEA 144 (199)
T ss_pred hccCHHHHHHHHHHHhCC---CcEEEEcCCc-hhhHHHHHhhchhHHHhcCEEEEec--------------ccCCCCCCH
Confidence 468999999999999998 9999999885 55555544332 2210 1111111 011112245
Q ss_pred HHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCc-cEEEcCChhHHHHHH
Q 008479 463 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI-GIVIGSSSSLRRVGS 513 (564)
Q Consensus 463 ~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~-giv~~~~~~L~~~~~ 513 (564)
..++..++..+. .+.+++||||+..|+.+.+.+|+ .|.+.+...+.++.+
T Consensus 145 ~~~~~~~~~~~~-~p~~~l~vgD~~~di~aA~~aG~~~i~~~~~~~~~~~l~ 195 (199)
T PRK09456 145 RIYQHVLQAEGF-SAADAVFFDDNADNIEAANALGITSILVTDKQTIPDYFA 195 (199)
T ss_pred HHHHHHHHHcCC-ChhHeEEeCCCHHHHHHHHHcCCEEEEecCCccHHHHHH
Confidence 667777777665 35889999999999999999999 555655556665543
No 59
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=98.57 E-value=1.6e-06 Score=85.33 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=70.4
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCce--eEEeeceeecCccccccccccCCCCCchHH
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNAL--NVHANEFSFKESISTGEIIEKVESPIDKVQ 463 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~--~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~ 463 (564)
..+-||..+.+..++++| +++.|+|..- ...++.+|+++|+... .+++ .++ ....+ -...
T Consensus 88 ~~~~~gv~e~L~~L~~~g---~~l~i~T~k~-~~~~~~~l~~~gl~~~F~~i~g----~~~----~~~~K------P~P~ 149 (220)
T COG0546 88 SRLFPGVKELLAALKSAG---YKLGIVTNKP-ERELDILLKALGLADYFDVIVG----GDD----VPPPK------PDPE 149 (220)
T ss_pred CccCCCHHHHHHHHHhCC---CeEEEEeCCc-HHHHHHHHHHhCCccccceEEc----CCC----CCCCC------cCHH
Confidence 579999999999999999 9999999885 8899999999886422 1222 000 00001 1335
Q ss_pred HHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCc
Q 008479 464 AFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI 498 (564)
Q Consensus 464 ~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~ 498 (564)
.+...+...+.+ +.++++||||.+|+.|.+.|++
T Consensus 150 ~l~~~~~~~~~~-~~~~l~VGDs~~Di~aA~~Ag~ 183 (220)
T COG0546 150 PLLLLLEKLGLD-PEEALMVGDSLNDILAAKAAGV 183 (220)
T ss_pred HHHHHHHHhCCC-hhheEEECCCHHHHHHHHHcCC
Confidence 566677777765 4689999999999999999996
No 60
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=98.53 E-value=7.8e-06 Score=83.79 Aligned_cols=103 Identities=18% Similarity=0.201 Sum_probs=70.5
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHHH
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAF 465 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l 465 (564)
+.+.||+.++++.++++| +++.|+|.+. ...+..+++..+.. . +.+.+.+ .++. .+...-.+...+
T Consensus 143 ~~l~pGv~elL~~L~~~g---~~l~IvTn~~-~~~~~~~l~~~~~~--~-~~~~~~~----v~~~---~~~~~KP~p~~~ 208 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAG---IKVAVCSTSN-EKAVSKIVNTLLGP--E-RAQGLDV----FAGD---DVPKKKPDPDIY 208 (286)
T ss_pred CCchhhHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHhccc--c-ccCceEE----Eecc---ccCCCCCCHHHH
Confidence 689999999999999998 9999999885 88888888754210 0 1111111 0111 011112234567
Q ss_pred HHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEc
Q 008479 466 NNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG 503 (564)
Q Consensus 466 ~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~ 503 (564)
...+...+.+ +.++++||||.+|+.+...+|+.++..
T Consensus 209 ~~a~~~~~~~-p~~~l~IGDs~~Di~aA~~aG~~~i~v 245 (286)
T PLN02779 209 NLAAETLGVD-PSRCVVVEDSVIGLQAAKAAGMRCIVT 245 (286)
T ss_pred HHHHHHhCcC-hHHEEEEeCCHHhHHHHHHcCCEEEEE
Confidence 7777766653 578999999999999999999865443
No 61
>TIGR02111 PQQ_syn_pqqC coenzyme PQQ biosynthesis protein C. This model describes the coenzyme PQQ (pyrrolo-quinoline-quinone) biosynthesis protein PqqC.In contrast to the broader model pfam05312, this model does not include related proteins likely to be functionally distinct from PqqC, such as homologs found in the Chlamydias.
Probab=98.53 E-value=8.1e-06 Score=79.87 Aligned_cols=185 Identities=13% Similarity=0.078 Sum_probs=127.5
Q ss_pred hhcChHHHHhhcCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-H--------HHHHHHH
Q 008479 31 AMYSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQAYELAEECADDDDAKLSISELRKGVLE-E--------LKMHDSF 101 (564)
Q Consensus 31 ~~~hpFv~~la~GtL~~~~f~~Yl~QD~~YL~~~~r~~~~~~~~a~~~~~~~~l~~~~~~i~~-E--------~~~h~~~ 101 (564)
..+|||-+.+.+|.|+++.++.|..|=|+|-..+.+..+-+.++++|.+.++.+... +.+ + .++...+
T Consensus 19 h~~HPF~~~~~~GkLt~~ql~~wa~nrYyyq~~iP~kdAAi~s~c~D~e~Rr~wl~r---i~DhdG~~~~~ggie~Wlrf 95 (239)
T TIGR02111 19 HDLHPFHALLHDGKLTRDQVQAWVLNRYYYQANIPLKDAAILARCPDPQLRRIWRQR---ILDHDGDHEEDGGIERWLRL 95 (239)
T ss_pred cccCcHHHHHhcCCCCHHHHHHHHHHhhhhhhcccHHHHHHHHcCCCHHHHHHHHHH---HHHhcCCCCCCCcHHHHHHH
Confidence 468999999999999999999999999999999999999999999999987665333 332 2 5788889
Q ss_pred HHHhCCCccc---ccCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008479 102 VKEWGTDLAK---MATVNSATVKYTEFLLATASGKVEGVKGPGKLATPFEKTKVAAYTLGAMSPCMRLYAFLGKEFHALL 178 (564)
Q Consensus 102 ~~~~gi~~~~---~~~~~pa~~~Y~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~l~Al~pC~~~Y~~i~~~~~~~~ 178 (564)
.+..|++.+. .....|+|+..++-....+... || .++++|++. +.-=-.|.+.-....
T Consensus 96 aealGl~re~v~s~~~~lP~trfaVday~~f~r~~------------~~------~eavasslT-E~f~P~I~~~ri~gl 156 (239)
T TIGR02111 96 AEAVGLDREYVLSTRGVLPGTRFAVDAYVHFVREK------------SL------LEAIASSLT-ELFAPQIHSERVAGM 156 (239)
T ss_pred HHHhCCCHHHHhcccCCCHHHHHHHHHHHHHHhcC------------CH------HHHHHHHHH-HHHhHHHHHHHHHhH
Confidence 9999999873 3334899998888777777532 23 367777666 544444433222111
Q ss_pred cCCCCcccccccccccCChhHHHHHH-------HHHHH-HHHHhccCCHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 008479 179 NANEGNHPYTKWIDNYSSESFQASAL-------QNEDL-LDKLSVSLTGEELDIIEKLYHQAMKLEVEFFCAQPLA 246 (564)
Q Consensus 179 ~~~~~~~~y~~Wi~~y~s~~f~~~v~-------~l~~~-ld~~~~~~~~~~~~~~~~~F~~~~~lE~~Fw~~a~~~ 246 (564)
..+..|++.=+=.-|..... ...++ ++.. .++++++++.++-+..|..=+.|+|+....
T Consensus 157 ------~~~Y~~~~~e~l~yF~~r~~qa~rd~e~~l~~~l~~~---~t~e~Q~~~l~al~fk~dvLw~~LDal~~a 223 (239)
T TIGR02111 157 ------LQHYDFIDDAALAYFRKRLTQAPRDVEFGLDYVLDHA---TTREKQEAALEALTFKCDVLWAQLDALYFA 223 (239)
T ss_pred ------HHHCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11234665321111222111 11121 3333 367889999999999999999999987443
No 62
>COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism]
Probab=98.52 E-value=1.4e-05 Score=77.31 Aligned_cols=186 Identities=15% Similarity=0.138 Sum_probs=131.9
Q ss_pred hhcChHHHHhhcCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HHH---HHHHHHHHHHH
Q 008479 31 AMYSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQAYELAEECADDDDAKLSISELRKG---VLE---ELKMHDSFVKE 104 (564)
Q Consensus 31 ~~~hpFv~~la~GtL~~~~f~~Yl~QD~~YL~~~~r~~~~~~~~a~~~~~~~~l~~~~~~---i~~---E~~~h~~~~~~ 104 (564)
-..|||.+.+.+|.|+++.++-|++.-++|+++|.+.++...++++|++......+.+.. ..+ =+++-..+...
T Consensus 24 ~~~HpF~~~m~~g~lt~~ql~~yvi~~~~~~k~~p~~lSail~rcdd~~~r~~~leni~de~~g~~e~~hidlwlr~aeA 103 (242)
T COG5424 24 DLPHPFYVAMQEGELTKEQLQGYVINRYYYQKNFPLYLSAILARCDDDDVRREWLENIMDEDNGYNEPNHIDLWLRLAEA 103 (242)
T ss_pred cCCCHHHHHHHccCCCHHHHHHHHHhhhHHHHhhhHHHHHHHhcCCcHhHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 378999999999999999999999999999999999999999999999876544333221 111 24566678888
Q ss_pred hCCCccc--ccCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 008479 105 WGTDLAK--MATVNSATVKYTEFLLATASGKVEGVKGPGKLATPFEKTKVAAYTLGAMSPCMRLYAFLGKEFHALLNANE 182 (564)
Q Consensus 105 ~gi~~~~--~~~~~pa~~~Y~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~l~Al~pC~~~Y~~i~~~~~~~~~~~~ 182 (564)
+|++.++ +.+|+|+++.=++.....+..+. .++++++++.-+..=-.|. .... .
T Consensus 104 lGvs~eei~s~eplp~~~~av~~~~~~a~~~s------------------~~~~~aslyt~El~apri~---~~ki---~ 159 (242)
T COG5424 104 LGVSREEILSHEPLPSTRFAVDTWVRFATEKS------------------WLEGAASLYTYELVAPRIS---VEKI---S 159 (242)
T ss_pred cCCCHHHHhhcCCCHHHHHHHHHHHHHhcchh------------------HHHHHHHHHHHHhhccHHH---HHHc---c
Confidence 9999873 45599999999999998886543 3466777765443322322 2211 1
Q ss_pred CcccccccccccCC--------hhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhhccC
Q 008479 183 GNHPYTKWIDNYSS--------ESFQASALQNEDLLDKLSVSLTGEELDIIEKLYHQAMKLEVEFFCAQ 243 (564)
Q Consensus 183 ~~~~y~~Wi~~y~s--------~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~F~~~~~lE~~Fw~~a 243 (564)
.-+.|..|++ +.. +.-...+....+++.+++. +.|..+++..+-.+++..=+.|.|+.
T Consensus 160 gl~~~~~~~~-~a~~~yf~~h~eaD~~Ha~Ealkiv~~~~~--t~E~~~~~~~~~~~~~D~lw~fLda~ 225 (242)
T COG5424 160 GLPYFNGFSD-AAAYAYFREHLEADVRHAEEALKIVLELAG--TRELQDQVLDALQKSLDVLWLFLDAR 225 (242)
T ss_pred CchhhcCcch-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334555554 111 1224455566667766653 45677888999999999999999976
No 63
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=98.48 E-value=2.1e-06 Score=93.98 Aligned_cols=96 Identities=18% Similarity=0.233 Sum_probs=68.9
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQA 464 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~ 464 (564)
...+.||+.+++++++++| +++.|+|.+- ...++..++.+|+.. .+.. +.++.-. .+..|...
T Consensus 328 ~~~l~pG~~e~L~~Lk~~g---~~l~IvS~~~-~~~~~~~l~~~~l~~--~f~~-------i~~~d~v----~~~~kP~~ 390 (459)
T PRK06698 328 KGALYPNVKEIFTYIKENN---CSIYIASNGL-TEYLRAIVSYYDLDQ--WVTE-------TFSIEQI----NSLNKSDL 390 (459)
T ss_pred CCCcCCCHHHHHHHHHHCC---CeEEEEeCCc-hHHHHHHHHHCCcHh--hcce-------eEecCCC----CCCCCcHH
Confidence 4688999999999999988 9999999995 899999999887531 1111 1111100 01124455
Q ss_pred HHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccE
Q 008479 465 FNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGI 500 (564)
Q Consensus 465 l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gi 500 (564)
+...++..+ ...+++||||.+|+.+...|++..
T Consensus 391 ~~~al~~l~---~~~~v~VGDs~~Di~aAk~AG~~~ 423 (459)
T PRK06698 391 VKSILNKYD---IKEAAVVGDRLSDINAAKDNGLIA 423 (459)
T ss_pred HHHHHHhcC---cceEEEEeCCHHHHHHHHHCCCeE
Confidence 555555443 367999999999999999999843
No 64
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=98.47 E-value=5.4e-07 Score=101.61 Aligned_cols=109 Identities=18% Similarity=0.255 Sum_probs=85.9
Q ss_pred CCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHHHH
Q 008479 387 SLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFN 466 (564)
Q Consensus 387 ~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~ 466 (564)
++|||..+.++.|++.| ++++++|+.- ....+.+.++.|++ +++++ +++.+|.+.++
T Consensus 446 ~~Rp~a~eaI~~l~~~G---i~v~miTGD~-~~ta~~iA~~lGI~--~v~a~-----------------~~PedK~~~v~ 502 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMG---IKTIMITGDN-RLTAAAIAAEAGVD--DFIAE-----------------ATPEDKIALIR 502 (675)
T ss_pred cchhHHHHHHHHHHHCC---CEEEEEcCCC-HHHHHHHHHHcCCC--EEEcC-----------------CCHHHHHHHHH
Confidence 89999999999999999 9999999986 88899999988863 33331 35678999999
Q ss_pred HHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCChhHHHHHHhhCCceeecCchhH
Q 008479 467 NTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLRRVGSQFGVTFIPLYPGLV 527 (564)
Q Consensus 467 ~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~~~L~~~~~~~gi~~~p~~~~~~ 527 (564)
++.+. +..+.++|||.||.++|..||+||++++...+++-+. .++-+.+++.
T Consensus 503 ~lq~~-----g~~VamvGDG~NDapAL~~AdvGiAm~~gt~~akeaa----divLldd~~s 554 (675)
T TIGR01497 503 QEQAE-----GKLVAMTGDGTNDAPALAQADVGVAMNSGTQAAKEAA----NMVDLDSDPT 554 (675)
T ss_pred HHHHc-----CCeEEEECCCcchHHHHHhCCEeEEeCCCCHHHHHhC----CEEECCCCHH
Confidence 98763 3568899999999999999999999986554443222 5555555443
No 65
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=98.44 E-value=8.9e-06 Score=79.56 Aligned_cols=98 Identities=17% Similarity=0.236 Sum_probs=69.6
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCc--eeEEeeceeecCccccccccccCCCCCchH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKV 462 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 462 (564)
...+.||+.++++.++++ ++++|+|.++ ...++..++..++.. ..|++.. + .| ..-.+.
T Consensus 95 ~~~~~~g~~~~L~~l~~~----~~~~i~Sn~~-~~~~~~~l~~~~l~~~fd~i~~~~----~---~~-------~~KP~~ 155 (224)
T TIGR02254 95 GHQLLPGAFELMENLQQK----FRLYIVTNGV-RETQYKRLRKSGLFPFFDDIFVSE----D---AG-------IQKPDK 155 (224)
T ss_pred cCeeCccHHHHHHHHHhc----CcEEEEeCCc-hHHHHHHHHHCCcHhhcCEEEEcC----c---cC-------CCCCCH
Confidence 468999999999999874 6999999997 788999998887632 1222211 0 01 111244
Q ss_pred HHHHHHHHHh-CCCCCccEEEEcCCc-cchhhhhhcCcc-EEE
Q 008479 463 QAFNNTLEKY-GTDRKNLSVYIGDSV-GDLLCLLEADIG-IVI 502 (564)
Q Consensus 463 ~~l~~l~~~~-~~~~~~~viyiGDs~-~Dl~~l~~Ad~g-iv~ 502 (564)
..+...++.. +. .+.++++||||. +|+.+...+++. |.+
T Consensus 156 ~~~~~~~~~~~~~-~~~~~v~igD~~~~di~~A~~~G~~~i~~ 197 (224)
T TIGR02254 156 EIFNYALERMPKF-SKEEVLMIGDSLTADIKGGQNAGLDTCWM 197 (224)
T ss_pred HHHHHHHHHhcCC-CchheEEECCCcHHHHHHHHHCCCcEEEE
Confidence 5666666665 54 357899999998 799999999984 444
No 66
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=98.44 E-value=6e-06 Score=79.61 Aligned_cols=91 Identities=10% Similarity=0.108 Sum_probs=62.2
Q ss_pred CCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHHHHH
Q 008479 388 LQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNN 467 (564)
Q Consensus 388 lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~ 467 (564)
..++..++++.++++| +++.|+|++. ...++.+|+..|+.. .+..-+..++ . .. --+...+..
T Consensus 107 ~~~~~~~~L~~l~~~g---~~~~i~T~~~-~~~~~~~l~~~gl~~--~f~~~~~~~~-~---------~~-KP~p~~~~~ 169 (197)
T TIGR01548 107 TLLTPKGLLRELHRAP---KGMAVVTGRP-RKDAAKFLTTHGLEI--LFPVQIWMED-C---------PP-KPNPEPLIL 169 (197)
T ss_pred cccCHHHHHHHHHHcC---CcEEEECCCC-HHHHHHHHHHcCchh--hCCEEEeecC-C---------CC-CcCHHHHHH
Confidence 4456699999999888 9999999996 889999999988632 2211111111 0 00 124455666
Q ss_pred HHHHhCCCCCccEEEEcCCccchhhhhhc
Q 008479 468 TLEKYGTDRKNLSVYIGDSVGDLLCLLEA 496 (564)
Q Consensus 468 l~~~~~~~~~~~viyiGDs~~Dl~~l~~A 496 (564)
.++..+.. +.++++|||+.+|+.+...|
T Consensus 170 ~~~~~~~~-~~~~i~vGD~~~Di~aA~~a 197 (197)
T TIGR01548 170 AAKALGVE-ACHAAMVGDTVDDIITGRKA 197 (197)
T ss_pred HHHHhCcC-cccEEEEeCCHHHHHHHHhC
Confidence 66665553 47899999999999988754
No 67
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=98.44 E-value=6.2e-06 Score=80.90 Aligned_cols=99 Identities=12% Similarity=0.171 Sum_probs=69.4
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQA 464 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~ 464 (564)
.+.+.||+.++++.+ + +++.|+|.+- ...++..|+..|+... |++.+.++. .....--+...
T Consensus 86 ~~~~~~gv~~~L~~L---~---~~~~ivTn~~-~~~~~~~l~~~~l~~~--------F~~~v~~~~---~~~~~KP~p~~ 147 (221)
T PRK10563 86 ELEPIAGANALLESI---T---VPMCVVSNGP-VSKMQHSLGKTGMLHY--------FPDKLFSGY---DIQRWKPDPAL 147 (221)
T ss_pred cCCcCCCHHHHHHHc---C---CCEEEEeCCc-HHHHHHHHHhcChHHh--------CcceEeeHH---hcCCCCCChHH
Confidence 578899999999988 3 7999999985 7889999988775311 111111111 00011124567
Q ss_pred HHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEE
Q 008479 465 FNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVI 502 (564)
Q Consensus 465 l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~ 502 (564)
+...++..+.. +..+++|||+.+|+.+...||+.++.
T Consensus 148 ~~~a~~~~~~~-p~~~l~igDs~~di~aA~~aG~~~i~ 184 (221)
T PRK10563 148 MFHAAEAMNVN-VENCILVDDSSAGAQSGIAAGMEVFY 184 (221)
T ss_pred HHHHHHHcCCC-HHHeEEEeCcHhhHHHHHHCCCEEEE
Confidence 77777777653 57899999999999999999996543
No 68
>PHA02597 30.2 hypothetical protein; Provisional
Probab=98.42 E-value=4.3e-06 Score=80.56 Aligned_cols=101 Identities=17% Similarity=0.183 Sum_probs=61.4
Q ss_pred hcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHH
Q 008479 384 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQ 463 (564)
Q Consensus 384 ~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~ 463 (564)
+...+.||+.++++.+++++ +.+++|.+- ...-...+...++. ..+-. .| +.+.++.. ...|..
T Consensus 71 ~~~~~~pG~~e~L~~L~~~~----~~~i~Tn~~-~~~~~~~~~~~~l~--~~f~~--~f-~~i~~~~~------~~~kp~ 134 (197)
T PHA02597 71 RYLSAYDDALDVINKLKEDY----DFVAVTALG-DSIDALLNRQFNLN--ALFPG--AF-SEVLMCGH------DESKEK 134 (197)
T ss_pred HhccCCCCHHHHHHHHHhcC----CEEEEeCCc-cchhHHHHhhCCHH--HhCCC--cc-cEEEEecc------CcccHH
Confidence 35679999999999998754 677777653 33222234444431 10000 01 11111111 112566
Q ss_pred HHHHHHHHhCCCCCccEEEEcCCccchhhhhhc--CccEEEc
Q 008479 464 AFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEA--DIGIVIG 503 (564)
Q Consensus 464 ~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~A--d~giv~~ 503 (564)
.+...+...+ +..++|||||.+|+.+...| |+.++..
T Consensus 135 ~~~~a~~~~~---~~~~v~vgDs~~di~aA~~a~~Gi~~i~~ 173 (197)
T PHA02597 135 LFIKAKEKYG---DRVVCFVDDLAHNLDAAHEALSQLPVIHM 173 (197)
T ss_pred HHHHHHHHhC---CCcEEEeCCCHHHHHHHHHHHcCCcEEEe
Confidence 7777777665 35789999999999999999 9864443
No 69
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=98.39 E-value=8e-06 Score=77.76 Aligned_cols=98 Identities=10% Similarity=0.166 Sum_probs=67.4
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCc--eeEEeeceeecCccccccccccCCCCCchH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKV 462 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 462 (564)
.+.+.||..++++.++ .+++|+|.+. ...+...++..|+.. ..|++-+- .|. .....--+.
T Consensus 82 ~~~~~~g~~~~L~~L~------~~~~i~Tn~~-~~~~~~~l~~~gl~~~fd~i~~~~~-------~~~---~~~~~KP~p 144 (184)
T TIGR01993 82 KLKPDPELRNLLLRLP------GRKIIFTNGD-RAHARRALNRLGIEDCFDGIFCFDT-------ANP---DYLLPKPSP 144 (184)
T ss_pred hCCCCHHHHHHHHhCC------CCEEEEeCCC-HHHHHHHHHHcCcHhhhCeEEEeec-------ccC---ccCCCCCCH
Confidence 4678899999999886 3689999996 889999999887632 12222210 010 000011244
Q ss_pred HHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccE
Q 008479 463 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGI 500 (564)
Q Consensus 463 ~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gi 500 (564)
..+...++..+. .+.++++|||+..|+.+...+|+..
T Consensus 145 ~~~~~~~~~~~~-~~~~~l~vgD~~~di~aA~~~G~~~ 181 (184)
T TIGR01993 145 QAYEKALREAGV-DPERAIFFDDSARNIAAAKALGMKT 181 (184)
T ss_pred HHHHHHHHHhCC-CccceEEEeCCHHHHHHHHHcCCEE
Confidence 667777776665 3578999999999999999999743
No 70
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=98.38 E-value=5.1e-06 Score=89.38 Aligned_cols=118 Identities=9% Similarity=0.023 Sum_probs=87.3
Q ss_pred hhhccCCCHHHHHHHhhcC-------CCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhh-cCCCceeEEeec
Q 008479 368 SGVLKGINLEDIKKAGERL-------SLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSS-AGLNALNVHANE 439 (564)
Q Consensus 368 ~~~f~Gi~~~~i~~~~~~i-------~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~-~g~~~~~I~aN~ 439 (564)
.-.|+|++.+++++.++.+ -+++. .++..++.| .++|||++. ..+++++++. .|. ..|++++
T Consensus 70 ~v~f~Gl~~~die~vaRavlpkf~~~dv~~e---~~~~~~~~g----~~vVVTAsP-rvmVEpFake~LG~--D~VvGTE 139 (498)
T PLN02499 70 FVATAGVHESEIESVARAVLPKFYMDDVDME---AWKVFSSCD----KRVVVTRMP-RVMVERFAKEHLRA--DEVIGSE 139 (498)
T ss_pred HHHhCCCCHHHHHHHHHHHhhHHHHhhCCHH---HHHHHHcCC----eEEEEeCCH-HHHHHHHHHHhcCC--ceEEeee
Confidence 5678999999998876632 23343 445555544 899999998 8999999998 554 6788999
Q ss_pred eeecC-ccccccccccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEE
Q 008479 440 FSFKE-SISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVI 502 (564)
Q Consensus 440 l~~~~-g~~tG~~~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~ 502 (564)
+++.+ |.+||.+.+.+| +..|.++++++..+ ....+-+||+.+|-..+..+. ++.+
T Consensus 140 L~v~~~G~~TG~~~G~n~-~ek~~~rl~~~~g~-----~~~~vg~~~~~~~~~f~~~ck-~~~~ 196 (498)
T PLN02499 140 LVVNRFGFATGFIRGTDV-DQSVANRVANLFVD-----ERPQLGLGRISASSSFLSLCK-EQIH 196 (498)
T ss_pred EEEeeccEEEEEEecCcc-HHHHHHHHHHHhCc-----cCceecccCCcccchhhhhCc-eEEe
Confidence 99985 999999887655 44447787776642 134678999999988887775 4554
No 71
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=98.37 E-value=9.6e-06 Score=76.56 Aligned_cols=92 Identities=15% Similarity=0.146 Sum_probs=65.2
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCc--eeEEeeceeecCccccccccccCCCCCch--
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDK-- 461 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K-- 461 (564)
+.+.||+.++++.++++| +++.|+|.+. ... ...+.+.|+.. ..|++. . . .+..|
T Consensus 84 ~~~~~g~~~~l~~l~~~g---~~~~i~Tn~~-~~~-~~~~~~~~l~~~f~~i~~~-----------~---~--~~~~KP~ 142 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARG---KKLALLTNSP-RDH-AVLVQELGLRDLFDVVIFS-----------G---D--VGRGKPD 142 (183)
T ss_pred CccCcCHHHHHHHHHHCC---CeEEEEeCCc-hHH-HHHHHhcCCHHHCCEEEEc-----------C---C--CCCCCCC
Confidence 789999999999999988 9999999997 555 55554455421 112211 0 0 11223
Q ss_pred HHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCcc
Q 008479 462 VQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG 499 (564)
Q Consensus 462 ~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g 499 (564)
...++..++..+.. +.++++|||+..|+.+.+.+++.
T Consensus 143 ~~~~~~~~~~~~~~-~~~~~~vgD~~~di~aA~~~G~~ 179 (183)
T TIGR01509 143 PDIYLLALKKLGLK-PEECLFVDDSPAGIEAAKAAGMH 179 (183)
T ss_pred HHHHHHHHHHcCCC-cceEEEEcCCHHHHHHHHHcCCE
Confidence 45666667666653 58899999999999999999973
No 72
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=98.37 E-value=1.4e-06 Score=98.58 Aligned_cols=94 Identities=20% Similarity=0.265 Sum_probs=78.0
Q ss_pred CCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHHHH
Q 008479 387 SLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFN 466 (564)
Q Consensus 387 ~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~ 466 (564)
++|||.++.++.|++.| +.++++||.- ..-.+.+.++.|++ +++|+ +++.+|.++++
T Consensus 445 ~~R~~~~eai~~Lr~~G---I~vvMiTGDn-~~TA~aIA~elGId--~v~A~-----------------~~PedK~~iV~ 501 (679)
T PRK01122 445 IVKPGIKERFAELRKMG---IKTVMITGDN-PLTAAAIAAEAGVD--DFLAE-----------------ATPEDKLALIR 501 (679)
T ss_pred cCchhHHHHHHHHHHCC---CeEEEECCCC-HHHHHHHHHHcCCc--EEEcc-----------------CCHHHHHHHHH
Confidence 78999999999999999 9999999985 78888888888863 22221 35668999999
Q ss_pred HHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCChhH
Q 008479 467 NTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSL 508 (564)
Q Consensus 467 ~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~~~L 508 (564)
++.+. +..|.++|||.||-++|..||+||+++..+.+
T Consensus 502 ~lQ~~-----G~~VaMtGDGvNDAPALa~ADVGIAMgsGTdv 538 (679)
T PRK01122 502 QEQAE-----GRLVAMTGDGTNDAPALAQADVGVAMNSGTQA 538 (679)
T ss_pred HHHHc-----CCeEEEECCCcchHHHHHhCCEeEEeCCCCHH
Confidence 98863 35678999999999999999999999965433
No 73
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=98.36 E-value=1.6e-06 Score=97.17 Aligned_cols=95 Identities=24% Similarity=0.326 Sum_probs=78.2
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQA 464 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~ 464 (564)
..++|||+.++++.++++| ++++|+|++. ...++.++++.|++ ++++- .+.+|.+.
T Consensus 403 ~d~l~~~a~e~i~~Lk~~G---i~v~ilSgd~-~~~a~~ia~~lgi~---~~~~~-----------------~p~~K~~~ 458 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRG---IEPVMLTGDN-RKTAKAVAKELGIN---VRAEV-----------------LPDDKAAL 458 (562)
T ss_pred cccccHHHHHHHHHHHHcC---CeEEEEcCCC-HHHHHHHHHHcCCc---EEccC-----------------ChHHHHHH
Confidence 3579999999999999998 9999999996 89999999998863 33221 23479999
Q ss_pred HHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCChhH
Q 008479 465 FNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSL 508 (564)
Q Consensus 465 l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~~~L 508 (564)
++++..+ +.+++|||||.||.+++..||+||.++..+.+
T Consensus 459 v~~l~~~-----~~~v~~VGDg~nD~~al~~A~vgia~g~g~~~ 497 (562)
T TIGR01511 459 IKELQEK-----GRVVAMVGDGINDAPALAQADVGIAIGAGTDV 497 (562)
T ss_pred HHHHHHc-----CCEEEEEeCCCccHHHHhhCCEEEEeCCcCHH
Confidence 8888752 46899999999999999999999999855433
No 74
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=98.36 E-value=5.2e-06 Score=82.42 Aligned_cols=90 Identities=13% Similarity=0.135 Sum_probs=59.4
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEcccc---CHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchH
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCW---CGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKV 462 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~---s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 462 (564)
....+++.+|+++++++| ++++|||+.. ....++.+++.+|++.. + ...+ +|.-..+ .-.+|.
T Consensus 113 s~p~~~a~elL~~l~~~G---~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~--f--~~i~-----~~d~~~~--~Kp~~~ 178 (237)
T TIGR01672 113 SIPKEVARQLIDMHQRRG---DAIFFVTGRTPGKTDTVSKTLAKNFHIPAM--N--PVIF-----AGDKPGQ--YQYTKT 178 (237)
T ss_pred CcchhHHHHHHHHHHHCC---CEEEEEeCCCCCcCHHHHHHHHHHhCCchh--e--eEEE-----CCCCCCC--CCCCHH
Confidence 345556999999999999 9999999862 15688888888887432 1 1222 2211110 001243
Q ss_pred HHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCc
Q 008479 463 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI 498 (564)
Q Consensus 463 ~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~ 498 (564)
.+ +.+. ..++||||+.+|+.+...|++
T Consensus 179 ~~----l~~~-----~i~i~vGDs~~DI~aAk~AGi 205 (237)
T TIGR01672 179 QW----IQDK-----NIRIHYGDSDNDITAAKEAGA 205 (237)
T ss_pred HH----HHhC-----CCeEEEeCCHHHHHHHHHCCC
Confidence 32 2322 247999999999999999998
No 75
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=98.35 E-value=6.4e-06 Score=78.48 Aligned_cols=94 Identities=13% Similarity=0.034 Sum_probs=66.4
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCc--eeEEeeceeecCccccccccccCCCCCchH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKV 462 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 462 (564)
.+.+.|| .+++..+++ + +++.|+|++. ...++..|++.|+.. ..|++-+ .....--+.
T Consensus 86 ~~~~~~~-~e~L~~L~~-~---~~l~I~T~~~-~~~~~~~l~~~~l~~~fd~i~~~~--------------~~~~~KP~p 145 (188)
T PRK10725 86 SVEPLPL-IEVVKAWHG-R---RPMAVGTGSE-SAIAEALLAHLGLRRYFDAVVAAD--------------DVQHHKPAP 145 (188)
T ss_pred cCCCccH-HHHHHHHHh-C---CCEEEEcCCc-hHHHHHHHHhCCcHhHceEEEehh--------------hccCCCCCh
Confidence 4566676 689999875 3 6899999997 788999999887632 1222211 001112345
Q ss_pred HHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCcc
Q 008479 463 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG 499 (564)
Q Consensus 463 ~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g 499 (564)
..+.......+.. +.+++||||+.+|+.+...||+.
T Consensus 146 ~~~~~~~~~~~~~-~~~~l~igDs~~di~aA~~aG~~ 181 (188)
T PRK10725 146 DTFLRCAQLMGVQ-PTQCVVFEDADFGIQAARAAGMD 181 (188)
T ss_pred HHHHHHHHHcCCC-HHHeEEEeccHhhHHHHHHCCCE
Confidence 6777777776653 57899999999999999999984
No 76
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=98.30 E-value=2.2e-06 Score=96.83 Aligned_cols=109 Identities=18% Similarity=0.222 Sum_probs=84.3
Q ss_pred CCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHHHH
Q 008479 387 SLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFN 466 (564)
Q Consensus 387 ~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~ 466 (564)
++|||.++.++.|++.| +.++++||-- ..-.+.+.++.|++ ++++ .+++.+|.++++
T Consensus 441 p~R~~a~e~I~~Lr~~G---I~vvMiTGDn-~~TA~aIA~elGI~--~v~A-----------------~~~PedK~~iV~ 497 (673)
T PRK14010 441 VIKDGLVERFRELREMG---IETVMCTGDN-ELTAATIAKEAGVD--RFVA-----------------ECKPEDKINVIR 497 (673)
T ss_pred CCcHHHHHHHHHHHHCC---CeEEEECCCC-HHHHHHHHHHcCCc--eEEc-----------------CCCHHHHHHHHH
Confidence 89999999999999999 9999999984 78888888888863 2222 135678999999
Q ss_pred HHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCChhHHHHHHhhCCceeecCchhH
Q 008479 467 NTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLRRVGSQFGVTFIPLYPGLV 527 (564)
Q Consensus 467 ~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~~~L~~~~~~~gi~~~p~~~~~~ 527 (564)
++.+. +..+.++|||.||-++|..||+||+++....++ ++-. .++-+.+++.
T Consensus 498 ~lQ~~-----G~~VaMtGDGvNDAPALa~ADVGIAMgsGTdvA---keAA-DiVLldd~ls 549 (673)
T PRK14010 498 EEQAK-----GHIVAMTGDGTNDAPALAEANVGLAMNSGTMSA---KEAA-NLIDLDSNPT 549 (673)
T ss_pred HHHhC-----CCEEEEECCChhhHHHHHhCCEEEEeCCCCHHH---HHhC-CEEEcCCCHH
Confidence 98763 356779999999999999999999998554333 2222 5555555443
No 77
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=98.24 E-value=1.5e-05 Score=77.59 Aligned_cols=104 Identities=12% Similarity=0.095 Sum_probs=65.8
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHH--HHHHHHhhcCCC--ceeEEeeceeecCccccccccccCCCCCc
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGD--LIRASFSSAGLN--ALNVHANEFSFKESISTGEIIEKVESPID 460 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~--~I~~~l~~~g~~--~~~I~aN~l~~~~g~~tG~~~~~~~~g~~ 460 (564)
.+.+.||+.++++.++++| +++.|+|.++... .+. .+...++. ...|++.. ..+..
T Consensus 92 ~~~~~~~~~~~L~~L~~~g---~~l~i~Sn~~~~~~~~~~-~~~~~~l~~~fd~v~~s~----------------~~~~~ 151 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKG---FKTACITNNFPTDHSAEE-ALLPGDIMALFDAVVESC----------------LEGLR 151 (211)
T ss_pred ccccChhHHHHHHHHHHCC---CeEEEEeCCCCccchhhh-HhhhhhhHhhCCEEEEee----------------ecCCC
Confidence 5789999999999999988 9999999876221 111 12122220 01222111 01112
Q ss_pred h--HHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCc-cEEEcCChhHH
Q 008479 461 K--VQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI-GIVIGSSSSLR 509 (564)
Q Consensus 461 K--~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~-giv~~~~~~L~ 509 (564)
| ...+...++..+. .+.++++|||+..|+.+...+|+ .|.+.....+.
T Consensus 152 KP~p~~~~~~~~~~g~-~~~~~l~i~D~~~di~aA~~aG~~~i~v~~~~~~~ 202 (211)
T TIGR02247 152 KPDPRIYQLMLERLGV-APEECVFLDDLGSNLKPAAALGITTIKVSDEEQAI 202 (211)
T ss_pred CCCHHHHHHHHHHcCC-CHHHeEEEcCCHHHHHHHHHcCCEEEEECCHHHHH
Confidence 3 3456666666655 35789999999999999999999 45555444443
No 78
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=98.23 E-value=2e-06 Score=83.23 Aligned_cols=89 Identities=20% Similarity=0.191 Sum_probs=69.0
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCch--H
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDK--V 462 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K--~ 462 (564)
..++|||..++++.|++.| +++.|+|+.- ......+++..|+....|+++.. ..+..| .
T Consensus 125 ~d~~~~~~~~~l~~L~~~G---i~~~i~TGD~-~~~a~~~~~~lgi~~~~v~a~~~---------------~kP~~k~~~ 185 (215)
T PF00702_consen 125 RDPLRPGAKEALQELKEAG---IKVAILTGDN-ESTASAIAKQLGIFDSIVFARVI---------------GKPEPKIFL 185 (215)
T ss_dssp EEEBHTTHHHHHHHHHHTT---EEEEEEESSE-HHHHHHHHHHTTSCSEEEEESHE---------------TTTHHHHHH
T ss_pred cCcchhhhhhhhhhhhccC---cceeeeeccc-ccccccccccccccccccccccc---------------ccccchhHH
Confidence 4589999999999999999 9999999885 78889999998874444555543 233456 5
Q ss_pred HHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcC
Q 008479 463 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEAD 497 (564)
Q Consensus 463 ~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad 497 (564)
++++++. . .+..+++||||.||..|+..||
T Consensus 186 ~~i~~l~----~-~~~~v~~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 186 RIIKELQ----V-KPGEVAMVGDGVNDAPALKAAG 215 (215)
T ss_dssp HHHHHHT----C-TGGGEEEEESSGGHHHHHHHSS
T ss_pred HHHHHHh----c-CCCEEEEEccCHHHHHHHHhCc
Confidence 5555543 2 1358999999999999999987
No 79
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.23 E-value=3.3e-06 Score=95.65 Aligned_cols=93 Identities=22% Similarity=0.227 Sum_probs=78.4
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHHH
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAF 465 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l 465 (564)
=++||+..+.++.|++.| ++++++|+-- ..-.+.+.++.|+ .+++++ ..+.+|.+.+
T Consensus 536 D~~R~~a~~aI~~L~~~G---i~~~mLTGDn-~~~A~~iA~~lGI--d~v~Ae-----------------llPedK~~~V 592 (713)
T COG2217 536 DELRPDAKEAIAALKALG---IKVVMLTGDN-RRTAEAIAKELGI--DEVRAE-----------------LLPEDKAEIV 592 (713)
T ss_pred CCCChhHHHHHHHHHHCC---CeEEEEcCCC-HHHHHHHHHHcCh--Hhhecc-----------------CCcHHHHHHH
Confidence 489999999999999999 9999999984 8889999988886 333332 2455899999
Q ss_pred HHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCCh
Q 008479 466 NNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSS 506 (564)
Q Consensus 466 ~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~~ 506 (564)
+++.++ +.++.+||||.||-++|..||+||+|+..+
T Consensus 593 ~~l~~~-----g~~VamVGDGINDAPALA~AdVGiAmG~Gt 628 (713)
T COG2217 593 RELQAE-----GRKVAMVGDGINDAPALAAADVGIAMGSGT 628 (713)
T ss_pred HHHHhc-----CCEEEEEeCCchhHHHHhhcCeeEeecCCc
Confidence 999853 467899999999999999999999999753
No 80
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.21 E-value=1.3e-05 Score=76.84 Aligned_cols=120 Identities=22% Similarity=0.287 Sum_probs=93.5
Q ss_pred cCCCHHHHHHHhhc-CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCc-c---
Q 008479 372 KGINLEDIKKAGER-LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKES-I--- 446 (564)
Q Consensus 372 ~Gi~~~~i~~~~~~-i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g-~--- 446 (564)
.|++.+++.++.+. ..|-||+.+.++.+.++ ++-+|+|-++ ..+++.+.+..|++--+++|.++.+|+- +
T Consensus 67 hGVt~~dlrr~sE~sa~lvPgA~etm~~l~~~----~tp~v~STSY-~qy~~r~a~~ig~Prg~~~~Te~~lD~~~~Pee 141 (315)
T COG4030 67 HGVTNRDLRRISELSAKLVPGAEETMATLQER----WTPVVISTSY-TQYLRRTASMIGVPRGELHGTEVDLDSIAVPEE 141 (315)
T ss_pred hcCcHHHHHHHHHhhcccCCChHHHHHHHhcc----CCceEEeccH-HHHHHHHHHhcCCCccccccccccCccccCChH
Confidence 78999999999885 89999999999999876 6888999999 8899999988888777899999988731 0
Q ss_pred --------------cccc------------cc----c------cCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccch
Q 008479 447 --------------STGE------------II----E------KVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDL 490 (564)
Q Consensus 447 --------------~tG~------------~~----~------~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl 490 (564)
..|+ +. + +...|..|.++++.+....+. +..+++||||.||.
T Consensus 142 eR~E~L~~~~~~~~~~geelfe~lDe~F~rLip~E~gki~~~vk~VGgg~ka~i~e~~~ele~~--d~sa~~VGDSItDv 219 (315)
T COG4030 142 EREELLSIIDVIASLSGEELFEKLDELFSRLIPSEVGKIVESVKAVGGGEKAKIMEGYCELEGI--DFSAVVVGDSITDV 219 (315)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHhhcCHHHHHHHHHhhhhccCcchhHHHHHHHhhcCC--CcceeEecCcccch
Confidence 1121 11 1 234566788888887765544 23478999999999
Q ss_pred hhhhhcCc
Q 008479 491 LCLLEADI 498 (564)
Q Consensus 491 ~~l~~Ad~ 498 (564)
.|++.+.-
T Consensus 220 ~ml~~~rg 227 (315)
T COG4030 220 KMLEAARG 227 (315)
T ss_pred HHHHHhhc
Confidence 99999743
No 81
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.20 E-value=3.4e-05 Score=92.23 Aligned_cols=94 Identities=16% Similarity=0.119 Sum_probs=69.5
Q ss_pred CCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCC---ceeEEeeceeecCccccccccccCCCCCchHH
Q 008479 387 SLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLN---ALNVHANEFSFKESISTGEIIEKVESPIDKVQ 463 (564)
Q Consensus 387 ~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~---~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~ 463 (564)
.+.||+.++++.|+++| +++.|+|.+. ...++..|++.|+. ...|++.+ . ...+--+.+
T Consensus 161 ~~~pG~~elL~~Lk~~G---~~l~IvSn~~-~~~~~~~L~~~gl~~~~Fd~iv~~~-----~---------~~~~KP~Pe 222 (1057)
T PLN02919 161 IGFPGALELITQCKNKG---LKVAVASSAD-RIKVDANLAAAGLPLSMFDAIVSAD-----A---------FENLKPAPD 222 (1057)
T ss_pred ccCccHHHHHHHHHhCC---CeEEEEeCCc-HHHHHHHHHHcCCChhHCCEEEECc-----c---------cccCCCCHH
Confidence 47899999999999999 9999999986 78899999887763 11222211 0 001112346
Q ss_pred HHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCcc
Q 008479 464 AFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG 499 (564)
Q Consensus 464 ~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g 499 (564)
.+...++..+. .+.++++|||+.+|+.+...|++-
T Consensus 223 ~~~~a~~~lgv-~p~e~v~IgDs~~Di~AA~~aGm~ 257 (1057)
T PLN02919 223 IFLAAAKILGV-PTSECVVIEDALAGVQAARAAGMR 257 (1057)
T ss_pred HHHHHHHHcCc-CcccEEEEcCCHHHHHHHHHcCCE
Confidence 66666766665 357899999999999999999994
No 82
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=98.16 E-value=6.9e-06 Score=96.34 Aligned_cols=111 Identities=17% Similarity=0.218 Sum_probs=80.3
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEee-ceee-cCccccc-----cccccCCCC
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHAN-EFSF-KESISTG-----EIIEKVESP 458 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN-~l~~-~~g~~tG-----~~~~~~~~g 458 (564)
=++||+..+.++.|++.| +.+.++||.- ..-...+.++.|+...++++. ++.- ++..+.. .+-. -+++
T Consensus 514 Dp~R~~~~~aI~~l~~aG---I~vvmiTGD~-~~tA~aIA~~lGI~~~~v~~g~~l~~~~~~el~~~~~~~~vfA-r~~P 588 (867)
T TIGR01524 514 DPPKESTKEAIAALFKNG---INVKVLTGDN-EIVTARICQEVGIDANDFLLGADIEELSDEELARELRKYHIFA-RLTP 588 (867)
T ss_pred CCCchhHHHHHHHHHHCC---CEEEEEcCCC-HHHHHHHHHHcCCCCCCeeecHhhhhCCHHHHHHHhhhCeEEE-ECCH
Confidence 489999999999999999 9999999984 778888888888743233322 1110 0000000 0111 2467
Q ss_pred CchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCCh
Q 008479 459 IDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSS 506 (564)
Q Consensus 459 ~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~~ 506 (564)
.+|.++++.+.+. +..|.++|||.||.++|+.||+||+++..+
T Consensus 589 e~K~~iV~~lq~~-----G~vVam~GDGvNDapALk~AdVGIAmg~gt 631 (867)
T TIGR01524 589 MQKSRIIGLLKKA-----GHTVGFLGDGINDAPALRKADVGISVDTAA 631 (867)
T ss_pred HHHHHHHHHHHhC-----CCEEEEECCCcccHHHHHhCCEEEEeCCcc
Confidence 8999999998763 356779999999999999999999998544
No 83
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=98.16 E-value=8e-06 Score=75.85 Aligned_cols=85 Identities=19% Similarity=0.322 Sum_probs=68.5
Q ss_pred HHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHHHHHHHHHhCC
Q 008479 395 FFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGT 474 (564)
Q Consensus 395 fl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~l~~~~~~ 474 (564)
.++.|+++| +.+.|+|++. ...++.+++++|+. .++. | ...|...+++++...+.
T Consensus 36 ~i~~Lk~~G---~~i~IvTn~~-~~~~~~~l~~~gi~--~~~~-----------~--------~~~k~~~~~~~~~~~~~ 90 (154)
T TIGR01670 36 GIRCALKSG---IEVAIITGRK-AKLVEDRCKTLGIT--HLYQ-----------G--------QSNKLIAFSDILEKLAL 90 (154)
T ss_pred HHHHHHHCC---CEEEEEECCC-CHHHHHHHHHcCCC--EEEe-----------c--------ccchHHHHHHHHHHcCC
Confidence 688889888 9999999997 67889999988863 2221 1 02488888988887765
Q ss_pred CCCccEEEEcCCccchhhhhhcCccEEEcCC
Q 008479 475 DRKNLSVYIGDSVGDLLCLLEADIGIVIGSS 505 (564)
Q Consensus 475 ~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~ 505 (564)
+ +..++|||||.+|+.|+..+++++.+++.
T Consensus 91 ~-~~~~~~vGDs~~D~~~~~~ag~~~~v~~~ 120 (154)
T TIGR01670 91 A-PENVAYIGDDLIDWPVMEKVGLSVAVADA 120 (154)
T ss_pred C-HHHEEEECCCHHHHHHHHHCCCeEecCCc
Confidence 3 47899999999999999999999988744
No 84
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=98.15 E-value=6e-06 Score=92.02 Aligned_cols=91 Identities=22% Similarity=0.275 Sum_probs=75.9
Q ss_pred cCCCCccHHHHHHHHHHcCCCCC-cEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNA-NVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQ 463 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~-~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~ 463 (564)
.-.+|||..+.++.++++| + ++.|+|+.. ....+.++++.|++ +++++ ..+.+|..
T Consensus 360 ~d~l~~~~~e~i~~L~~~G---i~~v~vvTgd~-~~~a~~i~~~lgi~--~~f~~-----------------~~p~~K~~ 416 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALG---IEKVVMLTGDR-RAVAERVARELGID--EVHAE-----------------LLPEDKLE 416 (536)
T ss_pred eccchHHHHHHHHHHHHcC---CCcEEEEcCCC-HHHHHHHHHHcCCh--hhhhc-----------------cCcHHHHH
Confidence 4589999999999999999 9 999999986 89999999998863 22211 12357999
Q ss_pred HHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEc
Q 008479 464 AFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG 503 (564)
Q Consensus 464 ~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~ 503 (564)
.++++..+ +.+++|||||.||.+++..||+|+.++
T Consensus 417 ~i~~l~~~-----~~~v~~vGDg~nD~~al~~A~vgia~g 451 (536)
T TIGR01512 417 IVKELREK-----YGPVAMVGDGINDAPALAAADVGIAMG 451 (536)
T ss_pred HHHHHHhc-----CCEEEEEeCCHHHHHHHHhCCEEEEeC
Confidence 98888753 368999999999999999999999998
No 85
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=98.10 E-value=2.6e-05 Score=77.50 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=60.9
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEccc---cCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchH
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYC---WCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKV 462 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g---~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 462 (564)
..+.||+.++++.++++| +++++||+- -....++.+++.+|++..+.+ .+. ++|.-. .-.+|.
T Consensus 113 a~p~~Ga~elL~~L~~~G---~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f--~vi-----l~gd~~----~K~~K~ 178 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRG---DSIYFITGRTATKTETVSKTLADDFHIPADNMN--PVI-----FAGDKP----GQYTKT 178 (237)
T ss_pred CcchHHHHHHHHHHHHCC---CeEEEEeCCCCcccHHHHHHHHHHcCCCcccce--eEE-----EcCCCC----CCCCHH
Confidence 567888999999999999 999999982 125677777776787423221 112 222211 113455
Q ss_pred HHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCc
Q 008479 463 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI 498 (564)
Q Consensus 463 ~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~ 498 (564)
..++ +. ..++||||+.+|+.+...|++
T Consensus 179 ~~l~----~~-----~i~I~IGDs~~Di~aA~~AGi 205 (237)
T PRK11009 179 QWLK----KK-----NIRIFYGDSDNDITAAREAGA 205 (237)
T ss_pred HHHH----hc-----CCeEEEcCCHHHHHHHHHcCC
Confidence 4433 22 248999999999999999998
No 86
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=98.07 E-value=1.1e-05 Score=94.80 Aligned_cols=113 Identities=16% Similarity=0.220 Sum_probs=80.3
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEe-eceee-cCccccc-----cccccCCCC
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHA-NEFSF-KESISTG-----EIIEKVESP 458 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~a-N~l~~-~~g~~tG-----~~~~~~~~g 458 (564)
=++||+..+.++.|++.| +.+++|||-- ..-...+.++.|+....+++ .++.. ++..+.. .+-. -+++
T Consensus 549 Dp~R~~a~~aI~~l~~aG---I~v~miTGD~-~~tA~aIA~~lGI~~~~vi~G~el~~~~~~el~~~v~~~~VfA-r~sP 623 (903)
T PRK15122 549 DPPKESAAPAIAALRENG---VAVKVLTGDN-PIVTAKICREVGLEPGEPLLGTEIEAMDDAALAREVEERTVFA-KLTP 623 (903)
T ss_pred CccHHHHHHHHHHHHHCC---CeEEEECCCC-HHHHHHHHHHcCCCCCCccchHhhhhCCHHHHHHHhhhCCEEE-EeCH
Confidence 389999999999999999 9999999984 77888888888874222221 11110 0000000 0111 2466
Q ss_pred CchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCChhH
Q 008479 459 IDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSL 508 (564)
Q Consensus 459 ~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~~~L 508 (564)
.+|.++++.+.+. +..|.++|||.||.++|..||+||+++..+.+
T Consensus 624 e~K~~iV~~Lq~~-----G~vVamtGDGvNDaPALk~ADVGIAmg~gtdv 668 (903)
T PRK15122 624 LQKSRVLKALQAN-----GHTVGFLGDGINDAPALRDADVGISVDSGADI 668 (903)
T ss_pred HHHHHHHHHHHhC-----CCEEEEECCCchhHHHHHhCCEEEEeCcccHH
Confidence 7999999998863 35677999999999999999999999854433
No 87
>PLN02811 hydrolase
Probab=98.07 E-value=4.3e-05 Score=75.06 Aligned_cols=102 Identities=9% Similarity=0.113 Sum_probs=63.0
Q ss_pred hcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHH-HHhhcCCCc--eeEEeeceeecCccccccccccCCCCCc
Q 008479 384 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRA-SFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPID 460 (564)
Q Consensus 384 ~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~-~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~ 460 (564)
....+.||+.++++.++++| +++.|+|++. ...+.. .++..++.. ..++|.+ + . .+..+--
T Consensus 75 ~~~~l~~gv~e~l~~L~~~g---~~~~i~S~~~-~~~~~~~~~~~~~l~~~f~~i~~~~----~-~-------~~~~~KP 138 (220)
T PLN02811 75 PTSDLMPGAERLVRHLHAKG---IPIAIATGSH-KRHFDLKTQRHGELFSLMHHVVTGD----D-P-------EVKQGKP 138 (220)
T ss_pred hhCCCCccHHHHHHHHHHCC---CcEEEEeCCc-hhhHHHHHcccHHHHhhCCEEEECC----h-h-------hccCCCC
Confidence 35788999999999999988 9999999886 433332 322222211 1222211 0 0 0001111
Q ss_pred hHHHHHHHHHHhC---CCCCccEEEEcCCccchhhhhhcCccEEE
Q 008479 461 KVQAFNNTLEKYG---TDRKNLSVYIGDSVGDLLCLLEADIGIVI 502 (564)
Q Consensus 461 K~~~l~~l~~~~~---~~~~~~viyiGDs~~Dl~~l~~Ad~giv~ 502 (564)
+...+...+...+ . .+..++||||+..|+.+.+.|++..+.
T Consensus 139 ~p~~~~~a~~~~~~~~~-~~~~~v~IgDs~~di~aA~~aG~~~i~ 182 (220)
T PLN02811 139 APDIFLAAARRFEDGPV-DPGKVLVFEDAPSGVEAAKNAGMSVVM 182 (220)
T ss_pred CcHHHHHHHHHhCCCCC-CccceEEEeccHhhHHHHHHCCCeEEE
Confidence 2345555555443 3 357899999999999999999995433
No 88
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=98.06 E-value=1.4e-05 Score=93.92 Aligned_cols=111 Identities=15% Similarity=0.193 Sum_probs=80.6
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEee-ceee-cCcccc-----ccccccCCCC
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHAN-EFSF-KESIST-----GEIIEKVESP 458 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN-~l~~-~~g~~t-----G~~~~~~~~g 458 (564)
=++||+..+.++.|++.| +.++++||-- ..-...+.++.|+....+++. ++.- ++.... -.+-. -+++
T Consensus 549 Dp~R~~a~~aI~~l~~aG---I~v~miTGD~-~~tA~~IA~~lGI~~~~v~~G~el~~l~~~el~~~~~~~~VfA-r~sP 623 (902)
T PRK10517 549 DPPKETTAPALKALKASG---VTVKILTGDS-ELVAAKVCHEVGLDAGEVLIGSDIETLSDDELANLAERTTLFA-RLTP 623 (902)
T ss_pred CcchhhHHHHHHHHHHCC---CEEEEEcCCC-HHHHHHHHHHcCCCccCceeHHHHHhCCHHHHHHHHhhCcEEE-EcCH
Confidence 489999999999999999 9999999984 788888888888753333321 1110 000000 00111 2467
Q ss_pred CchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCCh
Q 008479 459 IDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSS 506 (564)
Q Consensus 459 ~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~~ 506 (564)
.+|.++++.+.+. +..|.++|||.||.++|+.|||||.++...
T Consensus 624 e~K~~IV~~Lq~~-----G~vVam~GDGvNDaPALk~ADVGIAmg~gt 666 (902)
T PRK10517 624 MHKERIVTLLKRE-----GHVVGFMGDGINDAPALRAADIGISVDGAV 666 (902)
T ss_pred HHHHHHHHHHHHC-----CCEEEEECCCcchHHHHHhCCEEEEeCCcC
Confidence 7999999998863 356779999999999999999999998543
No 89
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=98.05 E-value=1.2e-05 Score=92.86 Aligned_cols=93 Identities=20% Similarity=0.223 Sum_probs=76.7
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQA 464 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~ 464 (564)
.-++|||..+.++.++++| ++++++|+.- ....+.+.++.|+. ++++ ....+|...
T Consensus 566 ~d~~r~~a~~~i~~L~~~g---i~~~llTGd~-~~~a~~ia~~lgi~---~~~~-----------------~~p~~K~~~ 621 (741)
T PRK11033 566 QDTLRADARQAISELKALG---IKGVMLTGDN-PRAAAAIAGELGID---FRAG-----------------LLPEDKVKA 621 (741)
T ss_pred ecCCchhHHHHHHHHHHCC---CEEEEEcCCC-HHHHHHHHHHcCCC---eecC-----------------CCHHHHHHH
Confidence 3489999999999999999 9999999985 88899999998863 2211 234589999
Q ss_pred HHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCChh
Q 008479 465 FNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSS 507 (564)
Q Consensus 465 l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~~~ 507 (564)
++++.+ ...+.+||||.||.++|..||+||.++..+.
T Consensus 622 v~~l~~------~~~v~mvGDgiNDapAl~~A~vgia~g~~~~ 658 (741)
T PRK11033 622 VTELNQ------HAPLAMVGDGINDAPAMKAASIGIAMGSGTD 658 (741)
T ss_pred HHHHhc------CCCEEEEECCHHhHHHHHhCCeeEEecCCCH
Confidence 998764 2479999999999999999999999985543
No 90
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=98.04 E-value=1.2e-05 Score=92.94 Aligned_cols=110 Identities=16% Similarity=0.163 Sum_probs=79.8
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEE-eeceeecCc--ccc-cc---------cc
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVH-ANEFSFKES--IST-GE---------II 452 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~-aN~l~~~~g--~~t-G~---------~~ 452 (564)
=++||+..+.++.|++.| +.++++||.- ....+.+.++.|+... ++ ++++.-.+. ..+ .+ +-
T Consensus 441 Dp~R~~a~~aI~~l~~aG---I~v~miTGD~-~~tA~~IA~~lGI~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vf 515 (755)
T TIGR01647 441 DPPRHDTKETIERARHLG---VEVKMVTGDH-LAIAKETARRLGLGTN-IYTADVLLKGDNRDDLPSGELGEMVEDADGF 515 (755)
T ss_pred CCChhhHHHHHHHHHHCC---CeEEEECCCC-HHHHHHHHHHcCCCCC-CcCHHHhcCCcchhhCCHHHHHHHHHhCCEE
Confidence 389999999999999999 9999999984 7888899999887432 22 122110000 000 00 11
Q ss_pred ccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCCh
Q 008479 453 EKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSS 506 (564)
Q Consensus 453 ~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~~ 506 (564)
. -.++.+|.++++.+.+. +..|.++|||.||.++|..||+||+++..+
T Consensus 516 A-r~~Pe~K~~iV~~lq~~-----G~~VamvGDGvNDapAL~~AdVGIAm~~gt 563 (755)
T TIGR01647 516 A-EVFPEHKYEIVEILQKR-----GHLVGMTGDGVNDAPALKKADVGIAVAGAT 563 (755)
T ss_pred E-ecCHHHHHHHHHHHHhc-----CCEEEEEcCCcccHHHHHhCCeeEEecCCc
Confidence 1 24567999999998763 356889999999999999999999998543
No 91
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=98.02 E-value=1.8e-05 Score=74.54 Aligned_cols=90 Identities=14% Similarity=0.282 Sum_probs=68.6
Q ss_pred HHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHHHHHHHHHhCCCC
Q 008479 397 QKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDR 476 (564)
Q Consensus 397 ~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~l~~~~~~~~ 476 (564)
+.++++| +++.|+|.+- ...++..++++|+. .++. +. ..|...++.+++..+. .
T Consensus 44 ~~L~~~G---i~laIiT~k~-~~~~~~~l~~lgi~--~~f~-------~~------------kpkp~~~~~~~~~l~~-~ 97 (169)
T TIGR02726 44 IVLQLCG---IDVAIITSKK-SGAVRHRAEELKIK--RFHE-------GI------------KKKTEPYAQMLEEMNI-S 97 (169)
T ss_pred HHHHHCC---CEEEEEECCC-cHHHHHHHHHCCCc--EEEe-------cC------------CCCHHHHHHHHHHcCc-C
Confidence 4456667 9999999996 78999999998863 2221 10 2477788888887765 3
Q ss_pred CccEEEEcCCccchhhhhhcCccEEEcC-ChhHHHHH
Q 008479 477 KNLSVYIGDSVGDLLCLLEADIGIVIGS-SSSLRRVG 512 (564)
Q Consensus 477 ~~~viyiGDs~~Dl~~l~~Ad~giv~~~-~~~L~~~~ 512 (564)
+.+++||||+.||+.|+..|++++++.+ .+.+++.+
T Consensus 98 ~~ev~~iGD~~nDi~~~~~ag~~~am~nA~~~lk~~A 134 (169)
T TIGR02726 98 DAEVCYVGDDLVDLSMMKRVGLAVAVGDAVADVKEAA 134 (169)
T ss_pred HHHEEEECCCHHHHHHHHHCCCeEECcCchHHHHHhC
Confidence 4789999999999999999999999973 45565554
No 92
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=97.99 E-value=0.00026 Score=70.47 Aligned_cols=91 Identities=11% Similarity=0.085 Sum_probs=59.9
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCc--eeEEeeceeecCccccccccccCCCCCchH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKV 462 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 462 (564)
.+.+.||..++++.+++ + +++.|+|.|- .. ++..|+.. ..|++.. .+ ...--+.
T Consensus 111 ~~~~~~gv~~~L~~L~~-~---~~l~i~Tn~~-~~-----~~~~gl~~~fd~i~~~~----------~~----~~~KP~p 166 (238)
T PRK10748 111 RIDVPQATHDTLKQLAK-K---WPLVAITNGN-AQ-----PELFGLGDYFEFVLRAG----------PH----GRSKPFS 166 (238)
T ss_pred cCCCCccHHHHHHHHHc-C---CCEEEEECCC-ch-----HHHCCcHHhhceeEecc----------cC----CcCCCcH
Confidence 57888999999999985 4 7899999874 33 23444321 1122111 11 0111245
Q ss_pred HHHHHHHHHhCCCCCccEEEEcCC-ccchhhhhhcCccE
Q 008479 463 QAFNNTLEKYGTDRKNLSVYIGDS-VGDLLCLLEADIGI 500 (564)
Q Consensus 463 ~~l~~l~~~~~~~~~~~viyiGDs-~~Dl~~l~~Ad~gi 500 (564)
..+...++..+. .+.++++|||+ ..|+.+...+|+..
T Consensus 167 ~~~~~a~~~~~~-~~~~~~~VGD~~~~Di~~A~~aG~~~ 204 (238)
T PRK10748 167 DMYHLAAEKLNV-PIGEILHVGDDLTTDVAGAIRCGMQA 204 (238)
T ss_pred HHHHHHHHHcCC-ChhHEEEEcCCcHHHHHHHHHCCCeE
Confidence 666666666655 35789999999 59999999999843
No 93
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=97.98 E-value=1.8e-05 Score=94.36 Aligned_cols=109 Identities=21% Similarity=0.257 Sum_probs=79.1
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceee-cCcccccccc------------
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSF-KESISTGEII------------ 452 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~-~~g~~tG~~~------------ 452 (564)
=++||+..+.++.|++.| +.+.+|||.- ..-...+.++.|+.....+.+.-.. ++.+.||.-.
T Consensus 645 Dp~r~~v~~aI~~l~~aG---Ikv~MiTGD~-~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~ 720 (1053)
T TIGR01523 645 DPPRNESAGAVEKCHQAG---INVHMLTGDF-PETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLK 720 (1053)
T ss_pred cCCchhHHHHHHHHHHCC---CEEEEECCCC-HHHHHHHHHHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHh
Confidence 489999999999999999 9999999985 7888888888887322111111000 0112333110
Q ss_pred -----ccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEc
Q 008479 453 -----EKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG 503 (564)
Q Consensus 453 -----~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~ 503 (564)
-.-+++.+|.++++.+.+. +..+.++|||.||.+||+.||+||+++
T Consensus 721 ~~~~V~ar~sP~~K~~iV~~lq~~-----g~~Vam~GDGvNDapaLk~AdVGIAmg 771 (1053)
T TIGR01523 721 ALCLVIARCAPQTKVKMIEALHRR-----KAFCAMTGDGVNDSPSLKMANVGIAMG 771 (1053)
T ss_pred hcCeEEEecCHHHHHHHHHHHHhc-----CCeeEEeCCCcchHHHHHhCCccEecC
Confidence 0124567999999988763 356789999999999999999999997
No 94
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=97.98 E-value=2.6e-05 Score=87.45 Aligned_cols=98 Identities=22% Similarity=0.323 Sum_probs=77.4
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQA 464 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~ 464 (564)
.-.++||+.+.++.++++| .+++.|+|+.- ....+.++++.|++ +++++ +.+.+|...
T Consensus 382 ~d~~~~g~~e~l~~L~~~g--~i~v~ivTgd~-~~~a~~i~~~lgi~--~~f~~-----------------~~p~~K~~~ 439 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRAG--GIKLVMLTGDN-RSAAEAVAAELGID--EVHAE-----------------LLPEDKLAI 439 (556)
T ss_pred cccchHhHHHHHHHHHHcC--CCeEEEEeCCC-HHHHHHHHHHhCCC--eeecc-----------------CCHHHHHHH
Confidence 4689999999999998753 17899999986 88999999998862 23322 123478888
Q ss_pred HHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCChhHH
Q 008479 465 FNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLR 509 (564)
Q Consensus 465 l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~~~L~ 509 (564)
++++... +.+++|+|||.||.+++..||+|+.++..+.+.
T Consensus 440 v~~l~~~-----~~~v~~vGDg~nD~~al~~A~vgia~g~~~~~~ 479 (556)
T TIGR01525 440 VKELQEE-----GGVVAMVGDGINDAPALAAADVGIAMGAGSDVA 479 (556)
T ss_pred HHHHHHc-----CCEEEEEECChhHHHHHhhCCEeEEeCCCCHHH
Confidence 8887752 358999999999999999999999998544443
No 95
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=97.97 E-value=2.9e-05 Score=92.10 Aligned_cols=108 Identities=19% Similarity=0.184 Sum_probs=77.6
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCce--eEE-eeceeec-Ccccc-----ccccccCC
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNAL--NVH-ANEFSFK-ESIST-----GEIIEKVE 456 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~--~I~-aN~l~~~-~g~~t-----G~~~~~~~ 456 (564)
=++||+..+.++.|++.| ++++++||-- ..-...+.++.|+... .++ .+++..- +.... -.+-. -+
T Consensus 578 Dplr~~~~~aI~~l~~aG---I~v~miTGD~-~~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfa-r~ 652 (941)
T TIGR01517 578 DPLRPGVREAVQECQRAG---ITVRMVTGDN-IDTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLA-RS 652 (941)
T ss_pred CCCchhHHHHHHHHHHCC---CEEEEECCCC-hHHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEE-EC
Confidence 389999999999999999 9999999984 7778888888886321 111 1111100 00000 00111 24
Q ss_pred CCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEc
Q 008479 457 SPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG 503 (564)
Q Consensus 457 ~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~ 503 (564)
++.+|.++++.+.+. +..|.++|||.||.++|+.|||||+++
T Consensus 653 sPe~K~~iV~~lq~~-----g~vVam~GDGvNDapALk~AdVGIAmg 694 (941)
T TIGR01517 653 SPLDKQLLVLMLKDM-----GEVVAVTGDGTNDAPALKLADVGFSMG 694 (941)
T ss_pred CHHHHHHHHHHHHHC-----CCEEEEECCCCchHHHHHhCCcceecC
Confidence 667999999998763 356789999999999999999999998
No 96
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=97.95 E-value=3.3e-05 Score=73.81 Aligned_cols=85 Identities=18% Similarity=0.356 Sum_probs=65.5
Q ss_pred HHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHHHHHHHHHhCCC
Q 008479 396 FQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTD 475 (564)
Q Consensus 396 l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~l~~~~~~~ 475 (564)
++.++++| +++.|+|+.. ...++.++++.|+. .++. | +..|...++++++..+..
T Consensus 57 i~~L~~~G---i~v~I~T~~~-~~~v~~~l~~lgl~--~~f~-----------g--------~~~k~~~l~~~~~~~gl~ 111 (183)
T PRK09484 57 IRCLLTSG---IEVAIITGRK-SKLVEDRMTTLGIT--HLYQ-----------G--------QSNKLIAFSDLLEKLAIA 111 (183)
T ss_pred HHHHHHCC---CEEEEEeCCC-cHHHHHHHHHcCCc--eeec-----------C--------CCcHHHHHHHHHHHhCCC
Confidence 34455677 9999999986 78899999987752 2221 1 235888999998887763
Q ss_pred CCccEEEEcCCccchhhhhhcCccEEEcCCh
Q 008479 476 RKNLSVYIGDSVGDLLCLLEADIGIVIGSSS 506 (564)
Q Consensus 476 ~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~~ 506 (564)
+..++|||||.+|+.|+..|++++++++..
T Consensus 112 -~~ev~~VGDs~~D~~~a~~aG~~~~v~~~~ 141 (183)
T PRK09484 112 -PEQVAYIGDDLIDWPVMEKVGLSVAVADAH 141 (183)
T ss_pred -HHHEEEECCCHHHHHHHHHCCCeEecCChh
Confidence 578999999999999999999998776443
No 97
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.92 E-value=3.1e-05 Score=90.81 Aligned_cols=93 Identities=24% Similarity=0.291 Sum_probs=75.9
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHHH
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAF 465 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l 465 (564)
-++|||..+.++.+++.| +++.++|+.- ....+.++++.|++ +++++ ....+|.+.+
T Consensus 649 d~~r~~a~~~i~~L~~~g---i~v~~~Tgd~-~~~a~~ia~~lgi~--~~~~~-----------------~~p~~K~~~i 705 (834)
T PRK10671 649 DPLRSDSVAALQRLHKAG---YRLVMLTGDN-PTTANAIAKEAGID--EVIAG-----------------VLPDGKAEAI 705 (834)
T ss_pred CcchhhHHHHHHHHHHCC---CeEEEEcCCC-HHHHHHHHHHcCCC--EEEeC-----------------CCHHHHHHHH
Confidence 478999999999999998 9999999985 88889999988863 33321 1133699999
Q ss_pred HHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCCh
Q 008479 466 NNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSS 506 (564)
Q Consensus 466 ~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~~ 506 (564)
+++... +.++++||||.||.+|+..||+||.+++.+
T Consensus 706 ~~l~~~-----~~~v~~vGDg~nD~~al~~Agvgia~g~g~ 741 (834)
T PRK10671 706 KRLQSQ-----GRQVAMVGDGINDAPALAQADVGIAMGGGS 741 (834)
T ss_pred HHHhhc-----CCEEEEEeCCHHHHHHHHhCCeeEEecCCC
Confidence 988652 467999999999999999999999998553
No 98
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=97.91 E-value=2.9e-05 Score=91.55 Aligned_cols=107 Identities=14% Similarity=0.223 Sum_probs=76.6
Q ss_pred CCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCce--eE-Eeeceee-cCcccc---c--cccccCCC
Q 008479 387 SLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNAL--NV-HANEFSF-KESIST---G--EIIEKVES 457 (564)
Q Consensus 387 ~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~--~I-~aN~l~~-~~g~~t---G--~~~~~~~~ 457 (564)
++|||..+.++.|++.| +++.++|+.- ..-...+.++.|+... .+ -..++.- ++.... . .+-. -++
T Consensus 528 p~r~~~~~~i~~l~~~G---i~v~miTGD~-~~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfa-r~~ 602 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGG---VRIIMITGDS-QETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFA-RAS 602 (884)
T ss_pred cchhHHHHHHHHHHHCC---CeEEEECCCC-HHHHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEE-ECC
Confidence 88999999999999999 9999999985 7888888888886321 11 1111110 000000 0 0111 145
Q ss_pred CCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEc
Q 008479 458 PIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG 503 (564)
Q Consensus 458 g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~ 503 (564)
..+|.++++.+... +..+.++|||.||.++++.||+||.++
T Consensus 603 P~~K~~iv~~lq~~-----g~~v~mvGDGvND~pAl~~AdVGia~g 643 (884)
T TIGR01522 603 PEHKMKIVKALQKR-----GDVVAMTGDGVNDAPALKLADIGVAMG 643 (884)
T ss_pred HHHHHHHHHHHHHC-----CCEEEEECCCcccHHHHHhCCeeEecC
Confidence 67899999887753 367889999999999999999999997
No 99
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=97.90 E-value=0.00018 Score=70.95 Aligned_cols=100 Identities=17% Similarity=0.157 Sum_probs=68.4
Q ss_pred hhcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCce--e-EEeeceeecCccccccccccCCCCC
Q 008479 383 GERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNAL--N-VHANEFSFKESISTGEIIEKVESPI 459 (564)
Q Consensus 383 ~~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~--~-I~aN~l~~~~g~~tG~~~~~~~~g~ 459 (564)
...+.+.||..+++..++++| +++.+.|++- ...++.+|...|+... . |.+.+ ...|+..+.
T Consensus 82 ~~~~~~~pGv~~~l~~L~~~~---i~~avaS~s~-~~~~~~~L~~~gl~~~f~~~v~~~d------v~~~KP~Pd----- 146 (221)
T COG0637 82 LEGLKPIPGVVELLEQLKARG---IPLAVASSSP-RRAAERVLARLGLLDYFDVIVTADD------VARGKPAPD----- 146 (221)
T ss_pred hcCCCCCccHHHHHHHHHhcC---CcEEEecCCh-HHHHHHHHHHccChhhcchhccHHH------HhcCCCCCH-----
Confidence 457899999999999999998 9999999985 7789999988775211 1 11111 111211111
Q ss_pred chHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEE
Q 008479 460 DKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVI 502 (564)
Q Consensus 460 ~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~ 502 (564)
-+|.. .+..+. .+.++|.|.||.+.+.+.+.|+.-++.
T Consensus 147 ---~yL~A-a~~Lgv-~P~~CvviEDs~~Gi~Aa~aAGm~vv~ 184 (221)
T COG0637 147 ---IYLLA-AERLGV-DPEECVVVEDSPAGIQAAKAAGMRVVG 184 (221)
T ss_pred ---HHHHH-HHHcCC-ChHHeEEEecchhHHHHHHHCCCEEEE
Confidence 22222 233333 358999999999999999999985444
No 100
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=97.89 E-value=0.00034 Score=70.62 Aligned_cols=116 Identities=14% Similarity=0.151 Sum_probs=74.2
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEcccc--CHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCW--CGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKV 462 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~--s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 462 (564)
...+-||+.+|++.++++| ++++|||..- +.......|+.+|++.. .-..+.+.+ ....|.
T Consensus 116 ~a~~ipGA~e~L~~L~~~G---~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~--~~d~lllr~------------~~~~K~ 178 (266)
T TIGR01533 116 QAKPVAGALDFLNYANSKG---VKIFYVSNRSEKEKAATLKNLKRFGFPQA--DEEHLLLKK------------DKSSKE 178 (266)
T ss_pred CCCcCccHHHHHHHHHHCC---CeEEEEeCCCcchHHHHHHHHHHcCcCCC--CcceEEeCC------------CCCCcH
Confidence 5678899999999999999 9999999864 13445567777786421 001111111 123577
Q ss_pred HHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEc-CChhHHHHHHhhCCceeecCc
Q 008479 463 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG-SSSSLRRVGSQFGVTFIPLYP 524 (564)
Q Consensus 463 ~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~-~~~~L~~~~~~~gi~~~p~~~ 524 (564)
.+++.+.+.+ .-+++|||..+|+......+ .--. .+..+.+...++|-+|+-|.+
T Consensus 179 ~rr~~I~~~y-----~Ivl~vGD~~~Df~~~~~~~--~~~~~r~~~v~~~~~~fG~~~i~lPN 234 (266)
T TIGR01533 179 SRRQKVQKDY-----EIVLLFGDNLLDFDDFFYKD--KESQDRQALVLQNQEKFGKKFIILPN 234 (266)
T ss_pred HHHHHHHhcC-----CEEEEECCCHHHhhhhhccC--cchHHHHHHHHHHHHHhCCCeEEecC
Confidence 7777665532 34789999999996433322 1100 123467777899999987654
No 101
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=97.88 E-value=8e-05 Score=70.62 Aligned_cols=109 Identities=11% Similarity=0.095 Sum_probs=70.7
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccC--------------HHHHHHHHhhcCCCceeEEeeceeecCcccccc
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWC--------------GDLIRASFSSAGLNALNVHANEFSFKESISTGE 450 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s--------------~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~ 450 (564)
++.+.||+.++++.++++| +++.|+|.+-. ..++..++.+.++....++.......+ .+.
T Consensus 24 ~~~~~pgv~e~L~~Lk~~G---~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~---~~~ 97 (176)
T TIGR00213 24 NFEFIDGVIDALRELKKMG---YALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVDLDGIYYCPHHPEG---VEE 97 (176)
T ss_pred HeEECCCHHHHHHHHHHCC---CEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCCccEEEECCCCCcc---ccc
Confidence 3568899999999999999 99999997631 134555666655542233221111110 112
Q ss_pred ccccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccE
Q 008479 451 IIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGI 500 (564)
Q Consensus 451 ~~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gi 500 (564)
+......+--+...+...+++.+.+ ..++++|||+.+|+.+...|++..
T Consensus 98 ~~~~~~~~KP~p~~~~~a~~~~~~~-~~~~v~VGDs~~Di~aA~~aG~~~ 146 (176)
T TIGR00213 98 FRQVCDCRKPKPGMLLQARKELHID-MAQSYMVGDKLEDMQAGVAAKVKT 146 (176)
T ss_pred ccCCCCCCCCCHHHHHHHHHHcCcC-hhhEEEEcCCHHHHHHHHHCCCcE
Confidence 2112222233567777777776653 578999999999999999999854
No 102
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.85 E-value=6.6e-05 Score=84.84 Aligned_cols=93 Identities=22% Similarity=0.258 Sum_probs=77.6
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHHH
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAF 465 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l 465 (564)
=++||+....+..|++.| ++++++|+-- +.-.+.+.++.|+ ..|+|+- .+.+|.+.+
T Consensus 722 D~vr~~a~~av~~Lk~~G---i~v~mLTGDn-~~aA~svA~~VGi--~~V~aev-----------------~P~~K~~~I 778 (951)
T KOG0207|consen 722 DQVRPDAALAVAELKSMG---IKVVMLTGDN-DAAARSVAQQVGI--DNVYAEV-----------------LPEQKAEKI 778 (951)
T ss_pred cccchhHHHHHHHHHhcC---ceEEEEcCCC-HHHHHHHHHhhCc--ceEEecc-----------------CchhhHHHH
Confidence 389999999999999999 9999999864 6678888888774 4555543 345799999
Q ss_pred HHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCCh
Q 008479 466 NNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSS 506 (564)
Q Consensus 466 ~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~~ 506 (564)
+++.++ ...+.++|||.||-++|..||+||+++..+
T Consensus 779 k~lq~~-----~~~VaMVGDGINDaPALA~AdVGIaig~gs 814 (951)
T KOG0207|consen 779 KEIQKN-----GGPVAMVGDGINDAPALAQADVGIAIGAGS 814 (951)
T ss_pred HHHHhc-----CCcEEEEeCCCCccHHHHhhccceeecccc
Confidence 999874 357899999999999999999999998774
No 103
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=97.79 E-value=0.00019 Score=64.45 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=68.8
Q ss_pred CCCccHHHHHHHHHHcCCCCCcEEEEccccC-------HHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCC
Q 008479 387 SLQDGCTTFFQKVVKNENLNANVHVLSYCWC-------GDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPI 459 (564)
Q Consensus 387 ~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s-------~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~ 459 (564)
.+.||+.++++.++++| ++++|+|.+.. ...++.+++..++....++ .++. ..-
T Consensus 25 ~~~~~v~~~l~~L~~~g---~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~------~~K 85 (132)
T TIGR01662 25 ILYPEVPDALAELKEAG---YKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVLY----------ACPH------CRK 85 (132)
T ss_pred eeCCCHHHHHHHHHHCC---CEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEEE----------ECCC------CCC
Confidence 57899999999999988 99999998741 4678888888776321111 1110 111
Q ss_pred chHHHHHHHHHHhC-CCCCccEEEEcC-CccchhhhhhcCc-cEEE
Q 008479 460 DKVQAFNNTLEKYG-TDRKNLSVYIGD-SVGDLLCLLEADI-GIVI 502 (564)
Q Consensus 460 ~K~~~l~~l~~~~~-~~~~~~viyiGD-s~~Dl~~l~~Ad~-giv~ 502 (564)
.|...+..++...+ . .+.+++|||| +.+|+.++..+++ .|.+
T Consensus 86 P~~~~~~~~~~~~~~~-~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~ 130 (132)
T TIGR01662 86 PKPGMFLEALKRFNEI-DPEESVYVGDQDLTDLQAAKRAGLAFILV 130 (132)
T ss_pred CChHHHHHHHHHcCCC-ChhheEEEcCCCcccHHHHHHCCCeEEEe
Confidence 25567777777763 5 4578999999 7999999999998 4443
No 104
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=97.76 E-value=7.9e-05 Score=65.62 Aligned_cols=90 Identities=21% Similarity=0.241 Sum_probs=64.6
Q ss_pred CCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHHHH
Q 008479 387 SLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFN 466 (564)
Q Consensus 387 ~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~ 466 (564)
.+.+...+.++.+... ++++|-|+.- .-++...++-.|++...|++ | .....|.++++
T Consensus 30 klf~ev~e~iqeL~d~----V~i~IASgDr-~gsl~~lae~~gi~~~rv~a-----------~------a~~e~K~~ii~ 87 (152)
T COG4087 30 KLFSEVSETIQELHDM----VDIYIASGDR-KGSLVQLAEFVGIPVERVFA-----------G------ADPEMKAKIIR 87 (152)
T ss_pred EEcHhhHHHHHHHHHh----heEEEecCCc-chHHHHHHHHcCCceeeeec-----------c------cCHHHHHHHHH
Confidence 4566667888888764 7899999874 55676666655543222211 1 12246888999
Q ss_pred HHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEc
Q 008479 467 NTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG 503 (564)
Q Consensus 467 ~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~ 503 (564)
++.++ ++++++||||.||.++|..||+||+.-
T Consensus 88 eLkk~-----~~k~vmVGnGaND~laLr~ADlGI~ti 119 (152)
T COG4087 88 ELKKR-----YEKVVMVGNGANDILALREADLGICTI 119 (152)
T ss_pred HhcCC-----CcEEEEecCCcchHHHhhhcccceEEe
Confidence 88863 578999999999999999999997764
No 105
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=97.74 E-value=0.00013 Score=76.52 Aligned_cols=104 Identities=16% Similarity=0.171 Sum_probs=69.8
Q ss_pred hcCCCCccHHHHHHHHHHcCCCCCcEEEEcc----ccCHHHHHHH-----------HhhcCCCceeEEeeceeecCcccc
Q 008479 384 ERLSLQDGCTTFFQKVVKNENLNANVHVLSY----CWCGDLIRAS-----------FSSAGLNALNVHANEFSFKESIST 448 (564)
Q Consensus 384 ~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~----g~s~~~I~~~-----------l~~~g~~~~~I~aN~l~~~~g~~t 448 (564)
+.+.+.||+.++++.|+++| ++++|+|. |+ +.+++.. ++..++.. +...+ .
T Consensus 27 ~~~~l~pGV~e~L~~Lk~~G---~kL~IvTNq~g~G~-~~~~~~~l~~~~~~i~~iL~~~gl~f-----d~i~i-----~ 92 (354)
T PRK05446 27 DKLAFEPGVIPALLKLQKAG---YKLVMVTNQDGLGT-DSFPQEDFDPPHNLMMQIFESQGIKF-----DEVLI-----C 92 (354)
T ss_pred ccceECcCHHHHHHHHHhCC---CeEEEEECCccccC-ccccHHHHhhHHHHHHHHHHHcCCce-----eeEEE-----e
Confidence 34789999999999999988 99999998 44 3444444 44444321 11111 1
Q ss_pred ccc-cccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCcc-EEE
Q 008479 449 GEI-IEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG-IVI 502 (564)
Q Consensus 449 G~~-~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g-iv~ 502 (564)
... ...+.+.-.|...+..++...+. .+.+++||||+.+|+.+...+++. |.+
T Consensus 93 ~~~~sd~~~~rKP~p~~l~~a~~~l~v-~~~~svmIGDs~sDi~aAk~aGi~~I~v 147 (354)
T PRK05446 93 PHFPEDNCSCRKPKTGLVEEYLAEGAI-DLANSYVIGDRETDVQLAENMGIKGIRY 147 (354)
T ss_pred CCcCcccCCCCCCCHHHHHHHHHHcCC-CcccEEEEcCCHHHHHHHHHCCCeEEEE
Confidence 111 01222345567788877776554 357899999999999999999994 444
No 106
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=97.73 E-value=0.00012 Score=86.80 Aligned_cols=109 Identities=20% Similarity=0.197 Sum_probs=75.4
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCc--eeEEeeceeecCcc---cc--------c--c
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESI---ST--------G--E 450 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~---~t--------G--~ 450 (564)
=++|||..+.++.|++.| +++.++|+.- ..-...+.++.|+.. ..+... .+.+.. .. . .
T Consensus 536 Dplr~~v~e~I~~l~~aG---I~v~miTGD~-~~tA~~ia~~~gi~~~~~~v~~~--~~~g~~l~~~~~~~~~~~~~~~~ 609 (917)
T TIGR01116 536 DPPRPEVADAIEKCRTAG---IRVIMITGDN-KETAEAICRRIGIFSPDEDVTFK--SFTGREFDEMGPAKQRAACRSAV 609 (917)
T ss_pred CCCchhHHHHHHHHHHCC---CEEEEecCCC-HHHHHHHHHHcCCCCCCccccce--eeeHHHHhhCCHHHHHHhhhcCe
Confidence 389999999999999999 9999999874 778888888887632 111110 011000 00 0 0
Q ss_pred ccccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCCh
Q 008479 451 IIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSS 506 (564)
Q Consensus 451 ~~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~~ 506 (564)
+-. -++..+|.++++.+... +..+.++|||.||.+|++.||+||.++...
T Consensus 610 v~a-r~~P~~K~~iV~~lq~~-----g~~va~iGDG~ND~~alk~AdVGia~g~g~ 659 (917)
T TIGR01116 610 LFS-RVEPSHKSELVELLQEQ-----GEIVAMTGDGVNDAPALKKADIGIAMGSGT 659 (917)
T ss_pred EEE-ecCHHHHHHHHHHHHhc-----CCeEEEecCCcchHHHHHhCCeeEECCCCc
Confidence 001 13456898888876642 356778999999999999999999998543
No 107
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=97.73 E-value=0.00024 Score=66.22 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=61.4
Q ss_pred CccHHHHHHHHHHcCCCCCcEEEEcccc--CHHHHHHHHhh-----cCCCceeEEeece-eecCccccccccccCCCCCc
Q 008479 389 QDGCTTFFQKVVKNENLNANVHVLSYCW--CGDLIRASFSS-----AGLNALNVHANEF-SFKESISTGEIIEKVESPID 460 (564)
Q Consensus 389 r~G~~efl~~l~~~g~~~~~~~IvS~g~--s~~~I~~~l~~-----~g~~~~~I~aN~l-~~~~g~~tG~~~~~~~~g~~ 460 (564)
.||..++++.++++| ++++++|+-- .....+.+|.. ++++...++++.- .+.+ .++++..+. ...=
T Consensus 29 ~~~~~~a~~~l~~~G---~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~~~g~~~~~--~~~e~i~~~-~~~~ 102 (157)
T smart00775 29 HPGVAKLYRDIQNNG---YKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLLSPDRLFAA--LHREVISKK-PEVF 102 (157)
T ss_pred CHHHHHHHHHHHHcC---CeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEEcCCcchhh--hhcccccCC-HHHH
Confidence 588889999999999 9999999842 12233567766 3454345554431 1100 122221110 0112
Q ss_pred hHHHHHHHHHHhCCCCCccEE-EEcCCccchhhhhhcCc
Q 008479 461 KVQAFNNTLEKYGTDRKNLSV-YIGDSVGDLLCLLEADI 498 (564)
Q Consensus 461 K~~~l~~l~~~~~~~~~~~vi-yiGDs~~Dl~~l~~Ad~ 498 (564)
|...++++...... .....+ .+||..+|..+-..+++
T Consensus 103 K~~~l~~i~~~~~~-~~~~f~~~~gn~~~D~~~y~~~gi 140 (157)
T smart00775 103 KIACLRDIKSLFPP-QGNPFYAGFGNRITDVISYSAVGI 140 (157)
T ss_pred HHHHHHHHHHhcCC-CCCCEEEEeCCCchhHHHHHHcCC
Confidence 77788887764321 112344 48899999999999987
No 108
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=97.71 E-value=0.00019 Score=65.98 Aligned_cols=104 Identities=14% Similarity=0.152 Sum_probs=69.9
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEccccC--------------HHHHHHHHhhcCCCceeEEeeceeecCccccccc
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWC--------------GDLIRASFSSAGLNALNVHANEFSFKESISTGEI 451 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s--------------~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~ 451 (564)
+.+.||+.++++.++++| ++++|+|.+-. ...+...+++.|+.....+. ....+...
T Consensus 26 ~~~~~g~~~~l~~Lk~~g---~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~~~~~~ 96 (147)
T TIGR01656 26 WQLRPGAVPALLTLRAAG---YTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLF------CPHHPADN 96 (147)
T ss_pred eEEcCChHHHHHHHHHCC---CEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEE------CCCCCCCC
Confidence 357899999999999999 99999998631 14567777777753111111 11000000
Q ss_pred cccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCc-cEEE
Q 008479 452 IEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI-GIVI 502 (564)
Q Consensus 452 ~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~-giv~ 502 (564)
....--|...++..++..+. .+.+++||||+..|+.++..+++ .|.+
T Consensus 97 ---~~~~KP~~~~~~~~~~~~~~-~~~e~i~IGDs~~Di~~A~~~Gi~~v~i 144 (147)
T TIGR01656 97 ---CSCRKPKPGLILEALKRLGV-DASRSLVVGDRLRDLQAARNAGLAAVLL 144 (147)
T ss_pred ---CCCCCCCHHHHHHHHHHcCC-ChHHEEEEcCCHHHHHHHHHCCCCEEEe
Confidence 01112366778888877765 35789999999999999999998 4444
No 109
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=97.71 E-value=0.00014 Score=68.49 Aligned_cols=89 Identities=13% Similarity=0.078 Sum_probs=58.0
Q ss_pred hhcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchH
Q 008479 383 GERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKV 462 (564)
Q Consensus 383 ~~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 462 (564)
...+.+.||..++++. +.|+|.+- ..+++..+++.|+... |+ .+.++.- ...+--..
T Consensus 86 ~~~~~~~~g~~~~L~~----------~~i~Tn~~-~~~~~~~l~~~~l~~~--------fd-~v~~~~~---~~~~KP~p 142 (175)
T TIGR01493 86 YKNLPPWPDSAAALAR----------VAILSNAS-HWAFDQFAQQAGLPWY--------FD-RAFSVDT---VRAYKPDP 142 (175)
T ss_pred HhcCCCCCchHHHHHH----------HhhhhCCC-HHHHHHHHHHCCCHHH--------Hh-hhccHhh---cCCCCCCH
Confidence 4467899999999982 67999884 8899999988775311 11 1111110 00111124
Q ss_pred HHHHHHHHHhCCCCCccEEEEcCCccchhhhhh
Q 008479 463 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLE 495 (564)
Q Consensus 463 ~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~ 495 (564)
..+....+..+. .+..+++||||..|+.+...
T Consensus 143 ~~f~~~~~~~~~-~p~~~l~vgD~~~Di~~A~~ 174 (175)
T TIGR01493 143 VVYELVFDTVGL-PPDRVLMVAAHQWDLIGARK 174 (175)
T ss_pred HHHHHHHHHHCC-CHHHeEeEecChhhHHHHhc
Confidence 555666666555 35789999999999988765
No 110
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=97.66 E-value=0.00016 Score=73.04 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=44.1
Q ss_pred CCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcC-ChhHHHH
Q 008479 457 SPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGS-SSSLRRV 511 (564)
Q Consensus 457 ~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~-~~~L~~~ 511 (564)
.+.+|...++.+++..+.+ .+++++||||.||++|+..|++||+++. .+.+++.
T Consensus 196 ~~~~K~~~l~~l~~~~gi~-~~e~i~~GD~~NDi~m~~~ag~~vamgna~~~lk~~ 250 (272)
T PRK10530 196 KGNSKGKRLTQWVEAQGWS-MKNVVAFGDNFNDISMLEAAGLGVAMGNADDAVKAR 250 (272)
T ss_pred CCCChHHHHHHHHHHcCCC-HHHeEEeCCChhhHHHHHhcCceEEecCchHHHHHh
Confidence 4556999999999888763 4789999999999999999999999973 3445433
No 111
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=97.62 E-value=5.8e-05 Score=76.39 Aligned_cols=56 Identities=21% Similarity=0.391 Sum_probs=48.7
Q ss_pred CCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEc-CChhHHHHH
Q 008479 456 ESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG-SSSSLRRVG 512 (564)
Q Consensus 456 ~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~-~~~~L~~~~ 512 (564)
..|.+|...|+.+++..+.+ .++++++|||.||++|+..|++||+++ +.+.+++.|
T Consensus 192 ~~gvsKg~al~~l~~~~gi~-~~~v~afGD~~NDi~Ml~~ag~~vAm~NA~~~vK~~A 248 (270)
T PRK10513 192 DKRVNKGTGVKSLAEHLGIK-PEEVMAIGDQENDIAMIEYAGVGVAMGNAIPSVKEVA 248 (270)
T ss_pred CCCCChHHHHHHHHHHhCCC-HHHEEEECCchhhHHHHHhCCceEEecCccHHHHHhc
Confidence 45678999999999988874 478999999999999999999999998 456777776
No 112
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.61 E-value=0.00025 Score=66.39 Aligned_cols=104 Identities=21% Similarity=0.208 Sum_probs=71.1
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEcccc--------------CHHHHHHHHhhcCCCceeEE-eeceeecCcccccc
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCW--------------CGDLIRASFSSAGLNALNVH-ANEFSFKESISTGE 450 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~--------------s~~~I~~~l~~~g~~~~~I~-aN~l~~~~g~~tG~ 450 (564)
+.+-||..++++.++++| ++++|+|..- ....+..++.++|+....++ |-... .+.
T Consensus 28 ~~~~pgv~e~L~~L~~~g---~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~fd~ii~~~~~~------~~~ 98 (161)
T TIGR01261 28 LRFEKGVIPALLKLKKAG---YKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGIIFDDVLICPHFP------DDN 98 (161)
T ss_pred eeECCCHHHHHHHHHHCC---CeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCceeEEEECCCCC------CCC
Confidence 578899999999999998 9999999741 14577888888886421222 20000 001
Q ss_pred ccccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCc-cEEEc
Q 008479 451 IIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI-GIVIG 503 (564)
Q Consensus 451 ~~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~-giv~~ 503 (564)
....--|...+....+..+. .+++++||||+.+|+.++..+++ ++.+.
T Consensus 99 ----~~~~KP~~~~~~~~~~~~~~-~~~e~l~IGD~~~Di~~A~~aGi~~i~~~ 147 (161)
T TIGR01261 99 ----CDCRKPKIKLLEPYLKKNLI-DKARSYVIGDRETDMQLAENLGIRGIQYD 147 (161)
T ss_pred ----CCCCCCCHHHHHHHHHHcCC-CHHHeEEEeCCHHHHHHHHHCCCeEEEEC
Confidence 11112355677777776655 34789999999999999999999 44443
No 113
>PRK10976 putative hydrolase; Provisional
Probab=97.60 E-value=6.7e-05 Score=75.78 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=49.1
Q ss_pred CCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEc-CChhHHHHH
Q 008479 455 VESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG-SSSSLRRVG 512 (564)
Q Consensus 455 ~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~-~~~~L~~~~ 512 (564)
...+.+|...|+.+.+..+.+ .++++++|||.||++|+..|++||+++ +.+.+++.|
T Consensus 185 ~~~gvsKg~al~~l~~~lgi~-~~~viafGD~~NDi~Ml~~ag~~vAm~NA~~~vK~~A 242 (266)
T PRK10976 185 MAGGVSKGHALEAVAKKLGYS-LKDCIAFGDGMNDAEMLSMAGKGCIMGNAHQRLKDLL 242 (266)
T ss_pred EcCCCChHHHHHHHHHHcCCC-HHHeEEEcCCcccHHHHHHcCCCeeecCCcHHHHHhC
Confidence 345678999999999988874 478999999999999999999999998 556777766
No 114
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.54 E-value=0.00057 Score=69.33 Aligned_cols=126 Identities=17% Similarity=0.125 Sum_probs=73.7
Q ss_pred hhccCCCHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCce--eEEeeceeecCc-
Q 008479 369 GVLKGINLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNAL--NVHANEFSFKES- 445 (564)
Q Consensus 369 ~~f~Gi~~~~i~~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~--~I~aN~l~~~~g- 445 (564)
.-|..++.++|.++-. |. .+--+..+++. ..-| ++.+++ ..-.+..+.+.|+..+ .-+.+-+.|.++
T Consensus 119 ~gF~d~t~~ei~~~TG---L~---~~~A~~A~~Re-~SEp-~~w~~~--~~~~~~~~~~~g~~~~~GgRf~H~l~~~~~~ 188 (302)
T PRK12702 119 IGFGDWTASELAAATG---IP---LEEAERAQKRE-YSEI-FSYSGD--PARLREAFAQQEANLTQHLLRLHQLHFSDLP 188 (302)
T ss_pred eehhhCCHHHHHHHhC---cC---HHHHHHHHhcc-CCcc-eEecCC--HHHHHHHHHHcCCeEEecCceEEeccccccc
Confidence 3455567777776521 11 11122223332 2233 445654 2333777777775322 012233333332
Q ss_pred --cccccccccCCC---CCchHHHHHHHHHHhCCC-CCccEEEEcCCccchhhhhhcCccEEEcC
Q 008479 446 --ISTGEIIEKVES---PIDKVQAFNNTLEKYGTD-RKNLSVYIGDSVGDLLCLLEADIGIVIGS 504 (564)
Q Consensus 446 --~~tG~~~~~~~~---g~~K~~~l~~l~~~~~~~-~~~~viyiGDs~~Dl~~l~~Ad~giv~~~ 504 (564)
..||-+.+.... +.+|.+.++.++..+... ..-.+|.+|||.||++||+.+|++|+|..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~dKg~A~~~L~~~y~~~~~~~~tiaLGDspND~~mLe~~D~~vvi~~ 253 (302)
T PRK12702 189 QWYLTGWMQPTLAAEPNSLPGEQAVQLLLDCYQRHLGPIKALGIGCSPPDLAFLRWSEQKVVLPS 253 (302)
T ss_pred ccccccccccccccccCCCCHHHHHHHHHHHHHhccCCceEEEecCChhhHHHHHhCCeeEEecC
Confidence 356665555555 789999988887765431 23478999999999999999999999953
No 115
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.53 E-value=0.00019 Score=84.69 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=77.5
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCcee---EE--eeceeec-Cccccc-----ccccc
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALN---VH--ANEFSFK-ESISTG-----EIIEK 454 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~---I~--aN~l~~~-~g~~tG-----~~~~~ 454 (564)
-++||+.++.++.|++.| +.+.+++|-- ..-...+.++.|+.... ++ ..++..- +..+.. .+-.+
T Consensus 546 Dppr~~v~~aI~~l~~AG---I~v~MiTGD~-~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfAR 621 (917)
T COG0474 546 DPPREDVKEAIEELREAG---IKVWMITGDH-VETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFAR 621 (917)
T ss_pred CCCCccHHHHHHHHHHCC---CcEEEECCCC-HHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEE
Confidence 489999999999999999 9999999974 77777888887753221 11 1111110 000000 01112
Q ss_pred CCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcC
Q 008479 455 VESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGS 504 (564)
Q Consensus 455 ~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~ 504 (564)
+++..|.++++.+.+. +..+-+.|||.||.+||+.|||||.++.
T Consensus 622 -vsP~qK~~IV~~lq~~-----g~vVamtGDGvNDapALk~ADVGIamg~ 665 (917)
T COG0474 622 -VSPEQKARIVEALQKS-----GHVVAMTGDGVNDAPALKAADVGIAMGG 665 (917)
T ss_pred -cCHHHHHHHHHHHHhC-----CCEEEEeCCCchhHHHHHhcCccEEecc
Confidence 4667999999998874 3566799999999999999999998885
No 116
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=97.52 E-value=0.0002 Score=85.41 Aligned_cols=109 Identities=19% Similarity=0.163 Sum_probs=74.9
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCc--eeE---Ee----------eceeecCcccccc
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNV---HA----------NEFSFKESISTGE 450 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I---~a----------N~l~~~~g~~tG~ 450 (564)
=++||+..+.++.+++.| ++++++||-- ..-+..+.++.|+-. ... +. |.-....-+.+|.
T Consensus 567 Dplr~~v~~aI~~l~~~G---i~v~~~TGd~-~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~ 642 (997)
T TIGR01106 567 DPPRAAVPDAVGKCRSAG---IKVIMVTGDH-PITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGS 642 (997)
T ss_pred CCChHHHHHHHHHHHHCC---CeEEEECCCC-HHHHHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhH
Confidence 489999999999999999 9999999874 777888888877521 000 00 0000000012221
Q ss_pred c---------c---c-------cCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEc
Q 008479 451 I---------I---E-------KVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG 503 (564)
Q Consensus 451 ~---------~---~-------~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~ 503 (564)
- . . --.+..+|.++++.+.+. +..+.++|||.||.+||+.||+||+++
T Consensus 643 ~l~~l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~-----g~vv~~~GDG~ND~paLk~AdVGiamg 709 (997)
T TIGR01106 643 DLKDMTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQ-----GAIVAVTGDGVNDSPALKKADIGVAMG 709 (997)
T ss_pred HhhhCCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHC-----CCEEEEECCCcccHHHHhhCCcceecC
Confidence 1 0 0 012456899999988752 356779999999999999999999997
No 117
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=97.52 E-value=0.00011 Score=74.65 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=58.3
Q ss_pred CCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEc-CChhHHHHHHhhCCceee--cCchhHHhHHh
Q 008479 456 ESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG-SSSSLRRVGSQFGVTFIP--LYPGLVKKQKE 532 (564)
Q Consensus 456 ~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~-~~~~L~~~~~~~gi~~~p--~~~~~~~~~~~ 532 (564)
..+.+|...|+.+.+..+++ .++++++|||.||++|+..|++||+++ +.+.+++.|... .+.+ =.+|+...+++
T Consensus 184 ~~g~sKg~al~~l~~~~gi~-~~~v~afGD~~NDi~Ml~~ag~~vAm~Na~~~vK~~A~~~--~v~~~n~edGva~~l~~ 260 (272)
T PRK15126 184 PVGCNKGAALAVLSQHLGLS-LADCMAFGDAMNDREMLGSVGRGFIMGNAMPQLRAELPHL--PVIGHCRNQAVSHYLTH 260 (272)
T ss_pred cCCCChHHHHHHHHHHhCCC-HHHeEEecCCHHHHHHHHHcCCceeccCChHHHHHhCCCC--eecCCCcchHHHHHHHH
Confidence 35668999999999988874 478999999999999999999999998 446777666321 1222 22466666766
Q ss_pred hhcC
Q 008479 533 YTEG 536 (564)
Q Consensus 533 ~~~~ 536 (564)
+...
T Consensus 261 ~~~~ 264 (272)
T PRK15126 261 WLDY 264 (272)
T ss_pred HhcC
Confidence 6543
No 118
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=97.49 E-value=0.00015 Score=73.15 Aligned_cols=58 Identities=21% Similarity=0.336 Sum_probs=49.4
Q ss_pred CCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEc-CChhHHHHHH
Q 008479 455 VESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG-SSSSLRRVGS 513 (564)
Q Consensus 455 ~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~-~~~~L~~~~~ 513 (564)
...|.+|...++.+.+..+.+ ..+++++|||.||++|+..|+.||+++ +.+.+++++.
T Consensus 184 ~~~g~~K~~al~~l~~~lgi~-~~~v~afGD~~ND~~Ml~~ag~gvam~Na~~~~k~~A~ 242 (264)
T COG0561 184 TPKGVSKGYALQRLAKLLGIK-LEEVIAFGDSTNDIEMLEVAGLGVAMGNADEELKELAD 242 (264)
T ss_pred ecCCCchHHHHHHHHHHhCCC-HHHeEEeCCccccHHHHHhcCeeeeccCCCHHHHhhCC
Confidence 345778999999999988874 478999999999999999999999998 4467777765
No 119
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=97.48 E-value=0.00015 Score=71.49 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=47.6
Q ss_pred CCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEc-CChhHHHHHH
Q 008479 456 ESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG-SSSSLRRVGS 513 (564)
Q Consensus 456 ~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~-~~~~L~~~~~ 513 (564)
..+.+|...++.+++..+.+ ..+++++|||.||++|+..+|+||+++ +.+.++++|.
T Consensus 182 ~~~vsK~~ai~~l~~~~~i~-~~~~~~~GD~~ND~~Ml~~~~~~~am~na~~~~k~~a~ 239 (254)
T PF08282_consen 182 PKGVSKGSAIKYLLEYLGIS-PEDIIAFGDSENDIEMLELAGYSVAMGNATPELKKAAD 239 (254)
T ss_dssp ETTSSHHHHHHHHHHHHTTS-GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSS
T ss_pred eCCCCHHHHHHHHhhhcccc-cceeEEeecccccHhHHhhcCeEEEEcCCCHHHHHhCC
Confidence 35678999999999888774 479999999999999999999999998 4466776663
No 120
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=97.48 E-value=0.0004 Score=77.98 Aligned_cols=107 Identities=18% Similarity=0.208 Sum_probs=80.5
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCcccccc-ccc-----------
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGE-IIE----------- 453 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~-~~~----------- 453 (564)
=+.||+..+-++.|++.| +.+++|+|-. ..-...+.++.| ++++.-.+.+-.+||+ |+.
T Consensus 583 DPPR~ev~~ai~~c~~aG---IrV~mITGD~-~~TA~AI~r~iG-----i~~~~ed~~~~~~TG~efD~ls~~~~~~~~~ 653 (972)
T KOG0202|consen 583 DPPRPEVADAIELCRQAG---IRVIMITGDN-KETAEAIAREIG-----IFSEDEDVSSMALTGSEFDDLSDEELDDAVR 653 (972)
T ss_pred CCCchhHHHHHHHHHHcC---CEEEEEcCCC-HHHHHHHHHHhC-----CCcCCccccccccchhhhhcCCHHHHHHHhh
Confidence 489999999999999999 9999999985 777788877766 3444444444445552 220
Q ss_pred -----cCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEc-CCh
Q 008479 454 -----KVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG-SSS 506 (564)
Q Consensus 454 -----~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~-~~~ 506 (564)
--+.+..|.++++.+.+. ++-+-+-|||+||-++|+.|||||++| ..+
T Consensus 654 ~~~vFaR~~P~HK~kIVeaLq~~-----geivAMTGDGVNDApALK~AdIGIAMG~~GT 707 (972)
T KOG0202|consen 654 RVLVFARAEPQHKLKIVEALQSR-----GEVVAMTGDGVNDAPALKKADIGIAMGISGT 707 (972)
T ss_pred cceEEEecCchhHHHHHHHHHhc-----CCEEEecCCCccchhhhhhcccceeecCCcc
Confidence 023456899999988763 244557999999999999999999999 443
No 121
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=97.45 E-value=0.00064 Score=64.65 Aligned_cols=103 Identities=15% Similarity=0.059 Sum_probs=64.0
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEcccc-------C-------HHHHHHHHhhcCCCceeEEeeceeecCccccccc
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCW-------C-------GDLIRASFSSAGLNALNVHANEFSFKESISTGEI 451 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~-------s-------~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~ 451 (564)
+.+.||+.+++++++++| +++.|+|.+- . .+.+...+++.|+....++.... ..+.
T Consensus 28 ~~~~pgv~e~L~~Lk~~g---~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~f~~i~~~~~------~~~~- 97 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAG---YRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGGRLDGIYYCPH------HPED- 97 (181)
T ss_pred eEECCCHHHHHHHHHHCC---CEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCccceEEECCC------CCCC-
Confidence 467899999999999998 9999999752 1 13344556555532111111000 0000
Q ss_pred cccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEE
Q 008479 452 IEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIV 501 (564)
Q Consensus 452 ~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv 501 (564)
.....--+...+...+...+. .+.++++|||+.+|+.+...+++.++
T Consensus 98 --~~~~~KP~p~~~~~~~~~l~~-~~~~~~~VgDs~~Di~~A~~aG~~~i 144 (181)
T PRK08942 98 --GCDCRKPKPGMLLSIAERLNI-DLAGSPMVGDSLRDLQAAAAAGVTPV 144 (181)
T ss_pred --CCcCCCCCHHHHHHHHHHcCC-ChhhEEEEeCCHHHHHHHHHCCCeEE
Confidence 001111234566666666655 35789999999999999999998433
No 122
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=97.45 E-value=0.00031 Score=77.70 Aligned_cols=87 Identities=22% Similarity=0.242 Sum_probs=71.8
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHHH
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAF 465 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l 465 (564)
-++||+..+.++.+++.| +.++++|+.- ......+.++.|+ + ....+.+|.+.+
T Consensus 346 d~lr~~~~~~i~~l~~~g---i~~~~ltGD~-~~~a~~ia~~lgi-----~-----------------~~~~p~~K~~~v 399 (499)
T TIGR01494 346 DPLRDDAKETISELREAG---IRVIMLTGDN-VLTAKAIAKELGI-----F-----------------ARVTPEEKAALV 399 (499)
T ss_pred CCCchhHHHHHHHHHHCC---CeEEEEcCCC-HHHHHHHHHHcCc-----e-----------------eccCHHHHHHHH
Confidence 489999999999999988 8999999985 7777777776553 1 114566899999
Q ss_pred HHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEc
Q 008479 466 NNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG 503 (564)
Q Consensus 466 ~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~ 503 (564)
+++... +..+.++|||.||.+++..||+||+++
T Consensus 400 ~~l~~~-----g~~v~~vGDg~nD~~al~~Advgia~~ 432 (499)
T TIGR01494 400 EALQKK-----GRVVAMTGDGVNDAPALKKADVGIAMG 432 (499)
T ss_pred HHHHHC-----CCEEEEECCChhhHHHHHhCCCccccc
Confidence 988642 357899999999999999999999997
No 123
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=97.38 E-value=0.00046 Score=82.94 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=77.7
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCC--ceeEEee-----------ceeec---C----
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLN--ALNVHAN-----------EFSFK---E---- 444 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~--~~~I~aN-----------~l~~~---~---- 444 (564)
.-++||+..+.++.|++.| +.++++||.- ..-...+.++.|+- ...++.- .+.+. +
T Consensus 654 ~d~lr~~~~~~I~~l~~ag---i~v~miTGD~-~~TA~~iA~~~gii~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1054)
T TIGR01657 654 ENPLKPDTKEVIKELKRAS---IRTVMITGDN-PLTAVHVARECGIVNPSNTLILAEAEPPESGKPNQIKFEVIDSIPFA 729 (1054)
T ss_pred ecCCCccHHHHHHHHHHCC---CeEEEECCCC-HHHHHHHHHHcCCCCCCceEEEeecccccCCCCceEEEEecCccccc
Confidence 3489999999999999999 9999999984 77777888888862 1122210 11000 0
Q ss_pred ------------------------cccccccc---------------c-----cCCCCCchHHHHHHHHHHhCCCCCccE
Q 008479 445 ------------------------SISTGEII---------------E-----KVESPIDKVQAFNNTLEKYGTDRKNLS 480 (564)
Q Consensus 445 ------------------------g~~tG~~~---------------~-----~~~~g~~K~~~l~~l~~~~~~~~~~~v 480 (564)
-..||... . --+++.+|.++++.+.+. +..|
T Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~~~itG~~l~~l~~~~~~~l~~~~~~~~VfAR~sP~qK~~iV~~lq~~-----g~~V 804 (1054)
T TIGR01657 730 STQVEIPYPLGQDSVEDLLASRYHLAMSGKAFAVLQAHSPELLLRLLSHTTVFARMAPDQKETLVELLQKL-----DYTV 804 (1054)
T ss_pred cccccccCcccccchhhhcccceEEEEEcHHHHHHHHhhHHHHHHHHhcCeEEEecCHHHHHHHHHHHHhC-----CCeE
Confidence 01223110 0 024567888888887752 3567
Q ss_pred EEEcCCccchhhhhhcCccEEEcCC
Q 008479 481 VYIGDSVGDLLCLLEADIGIVIGSS 505 (564)
Q Consensus 481 iyiGDs~~Dl~~l~~Ad~giv~~~~ 505 (564)
-++|||.||.++|+.||+||.++..
T Consensus 805 ~m~GDG~ND~~ALK~AdVGIam~~~ 829 (1054)
T TIGR01657 805 GMCGDGANDCGALKQADVGISLSEA 829 (1054)
T ss_pred EEEeCChHHHHHHHhcCcceeeccc
Confidence 7999999999999999999999843
No 124
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=97.34 E-value=0.0002 Score=70.22 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=46.3
Q ss_pred CCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEc-CChhHHHHH
Q 008479 457 SPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG-SSSSLRRVG 512 (564)
Q Consensus 457 ~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~-~~~~L~~~~ 512 (564)
.+.+|...++.+++..+.+ ..++++||||.||+.|+..+++|++++ +.+.+++.+
T Consensus 146 ~~~~K~~~i~~l~~~~~i~-~~~~i~~GD~~NDi~m~~~ag~~vam~Na~~~~k~~A 201 (225)
T TIGR01482 146 QGVNKGVAVKKLKEKLGIK-PGETLVCGDSENDIDLFEVPGFGVAVANAQPELKEWA 201 (225)
T ss_pred CCCCHHHHHHHHHHHhCCC-HHHEEEECCCHhhHHHHHhcCceEEcCChhHHHHHhc
Confidence 4568999999999888764 478999999999999999999999998 445666555
No 125
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=97.30 E-value=0.00023 Score=69.50 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=46.7
Q ss_pred CCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEc-CChhHHHHH
Q 008479 456 ESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG-SSSSLRRVG 512 (564)
Q Consensus 456 ~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~-~~~~L~~~~ 512 (564)
..+.+|...++.+++..+.+ ..++++||||.||++|+..|++|++++ +.+.+++.|
T Consensus 143 ~~~~~K~~~i~~l~~~~~i~-~~~~i~iGDs~ND~~ml~~ag~~vam~na~~~~k~~A 199 (215)
T TIGR01487 143 KKGVDKGVGVEKLKELLGIK-PEEVAAIGDSENDIDLFRVVGFKVAVANADDQLKEIA 199 (215)
T ss_pred cCCCChHHHHHHHHHHhCCC-HHHEEEECCCHHHHHHHHhCCCeEEcCCccHHHHHhC
Confidence 35678999999999887764 367999999999999999999999998 445677665
No 126
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=97.29 E-value=0.00026 Score=69.66 Aligned_cols=56 Identities=23% Similarity=0.341 Sum_probs=47.0
Q ss_pred CCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEc-CChhHHHHH
Q 008479 456 ESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG-SSSSLRRVG 512 (564)
Q Consensus 456 ~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~-~~~~L~~~~ 512 (564)
..+.+|...++.+++..+.+ ..+++++|||.||++|+..|++|++++ +.+.+++.|
T Consensus 153 ~~~~~Kg~al~~l~~~~~i~-~~~~i~~GD~~NDi~m~~~ag~~vam~Na~~~vk~~a 209 (230)
T PRK01158 153 SPGVNKGTGLKKLAELMGID-PEEVAAIGDSENDLEMFEVAGFGVAVANADEELKEAA 209 (230)
T ss_pred eCCCChHHHHHHHHHHhCCC-HHHEEEECCchhhHHHHHhcCceEEecCccHHHHHhc
Confidence 34567999999999887763 478999999999999999999999997 456677655
No 127
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.27 E-value=0.014 Score=57.14 Aligned_cols=99 Identities=18% Similarity=0.201 Sum_probs=69.3
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCc--eeEEeeceeecCccccccccccCCCCCch-
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDK- 461 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K- 461 (564)
.++..|+..++++.++++ .+++|+|.|. .......+++.|+.. ..|++.+ ..|..|
T Consensus 97 ~~~~~~~~~~~L~~l~~~----~~l~ilTNg~-~~~~~~~l~~~gl~~~Fd~v~~s~----------------~~g~~KP 155 (229)
T COG1011 97 LLPDYPEALEALKELGKK----YKLGILTNGA-RPHQERKLRQLGLLDYFDAVFISE----------------DVGVAKP 155 (229)
T ss_pred hCccChhHHHHHHHHHhh----ccEEEEeCCC-hHHHHHHHHHcCChhhhheEEEec----------------ccccCCC
Confidence 378899999999998865 6899999986 788889998887521 1122111 111223
Q ss_pred -HHHHHHHHHHhCCCCCccEEEEcCCccch-hhhhhcCc-cEEEcCC
Q 008479 462 -VQAFNNTLEKYGTDRKNLSVYIGDSVGDL-LCLLEADI-GIVIGSS 505 (564)
Q Consensus 462 -~~~l~~l~~~~~~~~~~~viyiGDs~~Dl-~~l~~Ad~-giv~~~~ 505 (564)
.++++..++..+.+ +.++++||||.... .....+|. +|.+...
T Consensus 156 ~~~~f~~~~~~~g~~-p~~~l~VgD~~~~di~gA~~~G~~~vwi~~~ 201 (229)
T COG1011 156 DPEIFEYALEKLGVP-PEEALFVGDSLENDILGARALGMKTVWINRG 201 (229)
T ss_pred CcHHHHHHHHHcCCC-cceEEEECCChhhhhHHHHhcCcEEEEECCC
Confidence 25666667766653 57899999987555 99999998 6677533
No 128
>PLN02887 hydrolase family protein
Probab=97.26 E-value=0.00027 Score=78.97 Aligned_cols=57 Identities=21% Similarity=0.305 Sum_probs=49.2
Q ss_pred CCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEc-CChhHHHHH
Q 008479 455 VESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG-SSSSLRRVG 512 (564)
Q Consensus 455 ~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~-~~~~L~~~~ 512 (564)
...|.+|...|+.+++..+++ .+++++||||.||++|+..|++||+|+ +.+.+++.|
T Consensus 502 ~p~gvSKG~ALk~L~e~lGI~-~eeviAFGDs~NDIeMLe~AG~gVAMgNA~eeVK~~A 559 (580)
T PLN02887 502 VPPGTSKGNGVKMLLNHLGVS-PDEIMAIGDGENDIEMLQLASLGVALSNGAEKTKAVA 559 (580)
T ss_pred ecCCCCHHHHHHHHHHHcCCC-HHHEEEEecchhhHHHHHHCCCEEEeCCCCHHHHHhC
Confidence 345678999999999988874 478999999999999999999999998 556777766
No 129
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=97.26 E-value=0.0003 Score=64.76 Aligned_cols=93 Identities=12% Similarity=0.067 Sum_probs=60.4
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQA 464 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~ 464 (564)
.+.+|||+.+|+++++ ++ +++.|+|.+- ..+++.+++..++.. .+-..+...+... ..|..+
T Consensus 43 ~v~l~pG~~e~L~~L~-~~---~~l~I~Ts~~-~~~~~~il~~l~~~~--~~f~~i~~~~d~~-----------~~KP~~ 104 (148)
T smart00577 43 YVKKRPGVDEFLKRAS-EL---FELVVFTAGL-RMYADPVLDLLDPKK--YFGYRRLFRDECV-----------FVKGKY 104 (148)
T ss_pred EEEECCCHHHHHHHHH-hc---cEEEEEeCCc-HHHHHHHHHHhCcCC--CEeeeEEECcccc-----------ccCCeE
Confidence 4688999999999998 46 8999999995 899999998876521 0111111111110 012112
Q ss_pred HHHHHHHhCCCCCccEEEEcCCccchhhhhhcC
Q 008479 465 FNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEAD 497 (564)
Q Consensus 465 l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad 497 (564)
++. ++..+. .+.++|+||||.+|+.+...++
T Consensus 105 ~k~-l~~l~~-~p~~~i~i~Ds~~~~~aa~~ng 135 (148)
T smart00577 105 VKD-LSLLGR-DLSNVIIIDDSPDSWPFHPENL 135 (148)
T ss_pred eec-HHHcCC-ChhcEEEEECCHHHhhcCccCE
Confidence 222 222233 3578999999999999887776
No 130
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=97.22 E-value=0.0016 Score=64.21 Aligned_cols=100 Identities=11% Similarity=0.105 Sum_probs=69.2
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCc-eeEEeeceeecCccccccccccCCCCCchHH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA-LNVHANEFSFKESISTGEIIEKVESPIDKVQ 463 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~-~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~ 463 (564)
...+.||+.++++.++++| ++++|+|.+ +....+.++++.+... ...+..- |+. . .| .-.+..
T Consensus 93 ~~~lypgv~e~L~~Lk~~G---~~l~I~Sn~-s~~~~~~~~~~~~~~~L~~~f~~~--fd~-~-~g--------~KP~p~ 156 (220)
T TIGR01691 93 TSHLYPDVPPALEAWLQLG---LRLAVYSSG-SVPAQKLLFGHSDAGNLTPYFSGY--FDT-T-VG--------LKTEAQ 156 (220)
T ss_pred ccCcCcCHHHHHHHHHHCC---CEEEEEeCC-CHHHHHHHHhhccccchhhhcceE--EEe-C-cc--------cCCCHH
Confidence 4679999999999999999 999999988 4777777776532101 1111111 110 0 11 122456
Q ss_pred HHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEE
Q 008479 464 AFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIV 501 (564)
Q Consensus 464 ~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv 501 (564)
.+..+++..+.+ +.+++||||+..|+.++..||+..+
T Consensus 157 ~y~~i~~~lgv~-p~e~lfVgDs~~Di~AA~~AG~~ti 193 (220)
T TIGR01691 157 SYVKIAGQLGSP-PREILFLSDIINELDAARKAGLHTG 193 (220)
T ss_pred HHHHHHHHhCcC-hhHEEEEeCCHHHHHHHHHcCCEEE
Confidence 677777776653 5789999999999999999999433
No 131
>PRK06769 hypothetical protein; Validated
Probab=97.17 E-value=0.002 Score=61.00 Aligned_cols=101 Identities=16% Similarity=0.171 Sum_probs=63.4
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHH--------HHHHHHhhcCCCceeEEeeceeecCccccccccccCCC
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGD--------LIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVES 457 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~--------~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~ 457 (564)
+.+.||..+++++++++| +++.|+|.+- .. -+...++..|+. .++. ....++. ....
T Consensus 27 ~~~~pgv~e~L~~Lk~~G---~~l~I~Tn~~-~~~~~~~~~~~~~~~l~~~g~~--~~~~------~~~~~~~---~~~~ 91 (173)
T PRK06769 27 FTLFPFTKASLQKLKANH---IKIFSFTNQP-GIADGIATIADFVQELKGFGFD--DIYL------CPHKHGD---GCEC 91 (173)
T ss_pred eEECCCHHHHHHHHHHCC---CEEEEEECCc-hhcCCcCCHHHHHHHHHhCCcC--EEEE------CcCCCCC---CCCC
Confidence 457899999999999998 9999999753 21 122224554542 2211 0000010 0001
Q ss_pred CCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCc-cEEE
Q 008479 458 PIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI-GIVI 502 (564)
Q Consensus 458 g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~-giv~ 502 (564)
.--+...+...++..+. .+.+++||||+.+|+.+...|++ +|.+
T Consensus 92 ~KP~p~~~~~~~~~l~~-~p~~~i~IGD~~~Di~aA~~aGi~~i~v 136 (173)
T PRK06769 92 RKPSTGMLLQAAEKHGL-DLTQCAVIGDRWTDIVAAAKVNATTILV 136 (173)
T ss_pred CCCCHHHHHHHHHHcCC-CHHHeEEEcCCHHHHHHHHHCCCeEEEE
Confidence 11244666677766654 35789999999999999999998 4444
No 132
>CHL00168 pbsA heme oxygenase; Provisional
Probab=97.16 E-value=0.094 Score=52.12 Aligned_cols=195 Identities=17% Similarity=0.174 Sum_probs=115.4
Q ss_pred hHHHHHHHHhHHhHHHhhcChHHHHhhcCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHH
Q 008479 15 GLARRLWIKFKRESVFAMYSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQAYELAEECADDDDAKL-SISELRKGVLE 93 (564)
Q Consensus 15 ~~~~~lw~~~~~~~~~~~~hpFv~~la~GtL~~~~f~~Yl~QD~~YL~~~~r~~~~~~~~a~~~~~~~-~l~~~~~~i~~ 93 (564)
+|+.+|-......-..+-+.+|++.+-.|.++.+.++.+|.|=|+.-...-.+..... +++-... .+-+ +.+
T Consensus 4 ~ls~~Lr~~T~~~H~~aE~~~f~k~ll~g~~~~~~Y~~ll~~ly~vY~aLE~~l~~~~---~~~~~~~~~~pe----L~R 76 (238)
T CHL00168 4 NLATQLREGTTKSHSMAENVSFVKSFLGGVIDKKSYRKLVANLYFVYSAIEEEIEKNK---EHPLIKPIYFQE----LNR 76 (238)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHcc---CCcccccccchh----hhh
Confidence 6888887776655556678999999999999999999999997776655555444332 1111000 0000 111
Q ss_pred HHHHHHHHHHHhCCCcccccCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCchhhhhhHHHHHHHHHH-HHHHH-HH--
Q 008479 94 ELKMHDSFVKEWGTDLAKMATVNSATVKYTEFLLATASGKVEGVKGPGKLATPFEKTKVAAYTLGAMSP-CMRLY-AF-- 169 (564)
Q Consensus 94 E~~~h~~~~~~~gi~~~~~~~~~pa~~~Y~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~l~Al~p-C~~~Y-~~-- 169 (564)
--.+-.++.--.|-+..+..+|+|+++.|++.+..++.++. . ++.+ |+-.| ..
T Consensus 77 ~~aLe~DL~~l~G~~w~~~~~p~pa~~~Yv~rI~~~~~~~P--------------------~---~LvAH~YvrYLGdls 133 (238)
T CHL00168 77 KESLEKDLNYYYGDDWKSIIEPSPATKIYVDRIHKISAKKP--------------------E---LLIAHAYTRYLGDLS 133 (238)
T ss_pred hHHHHHHHHHHcCCCccccCCCChHHHHHHHHHHHHhhcCh--------------------H---HHHHHHHHHHHHhcc
Confidence 01111122222354444567899999999999999986432 2 3334 55666 22
Q ss_pred ----HHHHHHhhccCCCCcccccccccccCChhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhhccC
Q 008479 170 ----LGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKLSVSLTGEELDIIEKLYHQAMKLEVEFFCAQ 243 (564)
Q Consensus 170 ----i~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~F~~~~~lE~~Fw~~a 243 (564)
|.+.+.+..+.. + ..--.+.+++.-++-...-..+.+.+|++ .+++++++++.+-=..+-.+-...+.+-
T Consensus 134 GGQiI~k~l~r~~gl~-~-~~G~~Fy~F~~i~~~~~fk~~yr~~Ld~l--~l~e~e~~~iI~EA~~AF~lN~~vf~eL 207 (238)
T CHL00168 134 GGQILKKIAQRAMNLS-D-SGGLAFYDFDNIEDDQEFKQIYKAALDNL--PLSDDQIQNIIAEANIAFNLNMKMFQEL 207 (238)
T ss_pred ccHHHHHHHHHHhCCC-C-CcCccccCCCCcCcHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223233322211 1 11112223333234567778889999976 4788888887777777777666666654
No 133
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.16 E-value=0.00038 Score=70.70 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=41.9
Q ss_pred CCCCchHHHHHHHHHHhCC---CCCccEEEEcCCccchhhhhhcCccEEEc
Q 008479 456 ESPIDKVQAFNNTLEKYGT---DRKNLSVYIGDSVGDLLCLLEADIGIVIG 503 (564)
Q Consensus 456 ~~g~~K~~~l~~l~~~~~~---~~~~~viyiGDs~~Dl~~l~~Ad~giv~~ 503 (564)
..+.+|...++.+++..+. + ..+++++|||.||++|+..|++||+|+
T Consensus 183 ~~g~sKg~al~~l~~~lgi~~~~-~~~viafGDs~NDi~Ml~~ag~gvAM~ 232 (271)
T PRK03669 183 DASAGKDQAANWLIATYQQLSGT-RPTTLGLGDGPNDAPLLDVMDYAVVVK 232 (271)
T ss_pred cCCCCHHHHHHHHHHHHHhhcCC-CceEEEEcCCHHHHHHHHhCCEEEEec
Confidence 3577899999999988876 4 478999999999999999999999998
No 134
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=97.15 E-value=0.0022 Score=60.29 Aligned_cols=93 Identities=14% Similarity=0.173 Sum_probs=63.9
Q ss_pred CCccHHHHHHHHHHcCCCCCcEEEEccccCH------------HHHHHHHhhcCCCceeEEeeceeecCccccccccccC
Q 008479 388 LQDGCTTFFQKVVKNENLNANVHVLSYCWCG------------DLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKV 455 (564)
Q Consensus 388 lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~------------~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~ 455 (564)
+-||..++++.++++| +++.|+|.+- . ..++.+++++|+....+++.. + +.
T Consensus 43 ~~pgv~e~L~~Lk~~G---~~l~I~TN~~-~~~~~~~~~~~~~~~i~~~l~~~gl~~~~ii~~~-----~---~~----- 105 (166)
T TIGR01664 43 LYPEIPAKLQELDDEG---YKIVIFTNQS-GIGRGKLSAESFKNKIEAFLEKLKVPIQVLAATH-----A---GL----- 105 (166)
T ss_pred ecCCHHHHHHHHHHCC---CEEEEEeCCc-ccccCcccHHHHHHHHHHHHHHcCCCEEEEEecC-----C---CC-----
Confidence 5689999999999999 9999999863 3 247788888886432222211 0 00
Q ss_pred CCCCchHHHHHHHHHHhC--CCCCccEEEEcCCc--------cchhhhhhcCcc
Q 008479 456 ESPIDKVQAFNNTLEKYG--TDRKNLSVYIGDSV--------GDLLCLLEADIG 499 (564)
Q Consensus 456 ~~g~~K~~~l~~l~~~~~--~~~~~~viyiGDs~--------~Dl~~l~~Ad~g 499 (564)
..--+...++...+..+ . ...+++||||+. +|+.+...|++.
T Consensus 106 -~~KP~p~~~~~~~~~~~~~~-~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~ 157 (166)
T TIGR01664 106 -YRKPMTGMWEYLQSQYNSPI-KMTRSFYVGDAAGRKLDFSDADIKFAKNLGLE 157 (166)
T ss_pred -CCCCccHHHHHHHHHcCCCC-CchhcEEEECCCCCCCCCchhHHHHHHHCCCC
Confidence 11123456666666665 3 347899999996 699999999864
No 135
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=97.13 E-value=0.00053 Score=68.04 Aligned_cols=58 Identities=22% Similarity=0.233 Sum_probs=48.4
Q ss_pred CCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEc-CChhHHHHHHh
Q 008479 456 ESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG-SSSSLRRVGSQ 514 (564)
Q Consensus 456 ~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~-~~~~L~~~~~~ 514 (564)
..+.+|...++.+++..+.+ ...++++|||.||+.|+..+++||+++ +.+.+++.+..
T Consensus 155 ~~~~~K~~al~~l~~~~g~~-~~~~i~~GD~~nD~~ml~~~~~~iav~na~~~~k~~a~~ 213 (236)
T TIGR02471 155 PLRASKGLALRYLSYRWGLP-LEQILVAGDSGNDEEMLRGLTLGVVVGNHDPELEGLRHQ 213 (236)
T ss_pred eCCCChHHHHHHHHHHhCCC-HHHEEEEcCCccHHHHHcCCCcEEEEcCCcHHHHHhhcC
Confidence 35678999999999888763 468999999999999999999999997 44677777653
No 136
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=97.11 E-value=0.002 Score=59.67 Aligned_cols=106 Identities=15% Similarity=0.169 Sum_probs=67.0
Q ss_pred CCCccHHHHHHHHHHcCCCCCcEEEEcc---ccCHHHHHHHHhhc-----CCCceeEEeeceeecCccccccccccCCCC
Q 008479 387 SLQDGCTTFFQKVVKNENLNANVHVLSY---CWCGDLIRASFSSA-----GLNALNVHANEFSFKESISTGEIIEKVESP 458 (564)
Q Consensus 387 ~lr~G~~efl~~l~~~g~~~~~~~IvS~---g~s~~~I~~~l~~~-----g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g 458 (564)
..++|..++++.+.++| ..++=+|+ +. ....+.+|..+ +++.-.++.+.-..-. -++.+...+ ..-
T Consensus 27 ~~h~g~~~l~~~i~~~G---Y~ilYlTaRp~~q-a~~Tr~~L~~~~q~~~~lP~Gpv~~sP~~l~~-al~rEvi~~-~p~ 100 (157)
T PF08235_consen 27 WTHPGAAELYRKIADNG---YKILYLTARPIGQ-ANRTRSWLAQHQQQGHNLPDGPVLLSPDSLFS-ALHREVISK-DPE 100 (157)
T ss_pred hhhhcHHHHHHHHHHCC---eEEEEECcCcHHH-HHHHHHHHHHHHhCCccCCCCCEEECCcchhh-hhhcccccc-ChH
Confidence 35678888999999999 88888887 33 56677777766 5665566666311110 011122111 012
Q ss_pred CchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCc
Q 008479 459 IDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI 498 (564)
Q Consensus 459 ~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~ 498 (564)
.-|...|+.++.........-...+|...+|..+-..+++
T Consensus 101 ~fK~~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGi 140 (157)
T PF08235_consen 101 EFKIACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGI 140 (157)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCC
Confidence 3588899988875321111223359999999999999987
No 137
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.10 E-value=0.0017 Score=61.47 Aligned_cols=110 Identities=6% Similarity=-0.016 Sum_probs=67.2
Q ss_pred hcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCce-eEEeeceeecCccccccccccCCCCCchH
Q 008479 384 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNAL-NVHANEFSFKESISTGEIIEKVESPIDKV 462 (564)
Q Consensus 384 ~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~-~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 462 (564)
..+.+.||+.++++.|+++| +++.|+|.+=....++.+|...++... .-+.+.-.| +.+.++. . .+..|.
T Consensus 42 ~~~~l~pGv~elL~~Lk~~G---~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~F-d~iv~~~---~--~~~~kp 112 (174)
T TIGR01685 42 TEVTLIKEVRDVLQTLKDAG---TYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLF-DDRIEIY---K--PNKAKQ 112 (174)
T ss_pred CEEEEcccHHHHHHHHHHCC---CEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhc-eeeeecc---C--CchHHH
Confidence 36789999999999999998 999999976226788888887775200 000000001 1111111 0 011121
Q ss_pred --HHHHHHHHHh--CCCCCccEEEEcCCccchhhhhhcCccEEEc
Q 008479 463 --QAFNNTLEKY--GTDRKNLSVYIGDSVGDLLCLLEADIGIVIG 503 (564)
Q Consensus 463 --~~l~~l~~~~--~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~ 503 (564)
..++.+.... +. .+.+++|||||..|+.+...|++.++..
T Consensus 113 ~~~i~~~~~~~~~~gl-~p~e~l~VgDs~~di~aA~~aGi~~i~v 156 (174)
T TIGR01685 113 LEMILQKVNKVDPSVL-KPAQILFFDDRTDNVREVWGYGVTSCYC 156 (174)
T ss_pred HHHHHHHhhhcccCCC-CHHHeEEEcChhHhHHHHHHhCCEEEEc
Confidence 1223222211 22 3578999999999999999999855444
No 138
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=97.05 E-value=0.00058 Score=68.68 Aligned_cols=49 Identities=29% Similarity=0.260 Sum_probs=41.7
Q ss_pred CCCchHHHHHHHHHHhCCC-CCccEEEEcCCccchhhhhhcCccEEEcCC
Q 008479 457 SPIDKVQAFNNTLEKYGTD-RKNLSVYIGDSVGDLLCLLEADIGIVIGSS 505 (564)
Q Consensus 457 ~g~~K~~~l~~l~~~~~~~-~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~ 505 (564)
.+..|...++.+++..+.+ ....++++|||.||++|+..|++||+|++.
T Consensus 173 ~~~~Kg~ai~~l~~~~~i~~~~~~~~a~GD~~ND~~Ml~~ag~~vam~Na 222 (256)
T TIGR01486 173 AGSDKGKAANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVDLAVVVPGP 222 (256)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCceEEEEcCCHhhHHHHHHCCEEEEeCCC
Confidence 4568999999998887653 147899999999999999999999999855
No 139
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.04 E-value=0.0035 Score=59.08 Aligned_cols=94 Identities=12% Similarity=0.090 Sum_probs=67.3
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQA 464 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~ 464 (564)
...+.||+.++++.++++| .+++|+|.+-....++.+++..|+. .+ .+. .-.+...
T Consensus 41 ~~~~~pgv~e~L~~Lk~~g---~~l~I~Sn~~~~~~~~~~~~~~gl~---~~-----------~~~-------~KP~p~~ 96 (170)
T TIGR01668 41 HNEAYPALRDWIEELKAAG---RKLLIVSNNAGEQRAKAVEKALGIP---VL-----------PHA-------VKPPGCA 96 (170)
T ss_pred CCCcChhHHHHHHHHHHcC---CEEEEEeCCchHHHHHHHHHHcCCE---EE-----------cCC-------CCCChHH
Confidence 3578899999999999998 9999999873246677776665531 11 010 1123456
Q ss_pred HHHHHHHhCCCCCccEEEEcCCc-cchhhhhhcCc-cEEEc
Q 008479 465 FNNTLEKYGTDRKNLSVYIGDSV-GDLLCLLEADI-GIVIG 503 (564)
Q Consensus 465 l~~l~~~~~~~~~~~viyiGDs~-~Dl~~l~~Ad~-giv~~ 503 (564)
+...++..+.. +.++++|||+. +|+.+...+++ .|.+.
T Consensus 97 ~~~~l~~~~~~-~~~~l~IGDs~~~Di~aA~~aGi~~i~v~ 136 (170)
T TIGR01668 97 FRRAHPEMGLT-SEQVAVVGDRLFTDVMGGNRNGSYTILVE 136 (170)
T ss_pred HHHHHHHcCCC-HHHEEEECCcchHHHHHHHHcCCeEEEEc
Confidence 66677666553 57899999998 79999999999 55553
No 140
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=97.01 E-value=0.0008 Score=65.94 Aligned_cols=45 Identities=29% Similarity=0.271 Sum_probs=39.7
Q ss_pred CCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEE
Q 008479 457 SPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVI 502 (564)
Q Consensus 457 ~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~ 502 (564)
.+..|...++.+++..+.+ +.+++++|||.||++|+..|++||++
T Consensus 176 ~~~~Kg~al~~l~~~lgi~-~~~vi~~GD~~NDi~ml~~ag~~va~ 220 (221)
T TIGR02463 176 ASSSKGKAANWLKATYNQP-DVKTLGLGDGPNDLPLLEVADYAVVI 220 (221)
T ss_pred CCCCHHHHHHHHHHHhCCC-CCcEEEECCCHHHHHHHHhCCceEEe
Confidence 4556999999999888764 57899999999999999999999886
No 141
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=96.95 E-value=0.0017 Score=69.37 Aligned_cols=109 Identities=18% Similarity=0.245 Sum_probs=72.2
Q ss_pred CCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHHHH
Q 008479 387 SLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFN 466 (564)
Q Consensus 387 ~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~ 466 (564)
.+.||.+|-|..+|+-| ++.+.+++.- .--...+..+.|++ .|.. .++..+|...++
T Consensus 447 ivK~Gi~ERf~elR~Mg---IkTvM~TGDN-~~TAa~IA~EAGVD------------------dfiA-eatPEdK~~~I~ 503 (681)
T COG2216 447 IVKPGIKERFAELRKMG---IKTVMITGDN-PLTAAAIAAEAGVD------------------DFIA-EATPEDKLALIR 503 (681)
T ss_pred hcchhHHHHHHHHHhcC---CeEEEEeCCC-HHHHHHHHHHhCch------------------hhhh-cCChHHHHHHHH
Confidence 56778888888888777 7887777653 33233333444431 1221 256779999999
Q ss_pred HHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCChhHHHHHHhhCCceeecCchhH
Q 008479 467 NTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLRRVGSQFGVTFIPLYPGLV 527 (564)
Q Consensus 467 ~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~~~L~~~~~~~gi~~~p~~~~~~ 527 (564)
+...+ +..+-+.|||.||-++|..||+|+++.....-+ ++- -+.+.+.++..
T Consensus 504 ~eQ~~-----grlVAMtGDGTNDAPALAqAdVg~AMNsGTqAA---kEA-aNMVDLDS~PT 555 (681)
T COG2216 504 QEQAE-----GRLVAMTGDGTNDAPALAQADVGVAMNSGTQAA---KEA-ANMVDLDSNPT 555 (681)
T ss_pred HHHhc-----CcEEEEcCCCCCcchhhhhcchhhhhccccHHH---HHh-hcccccCCCcc
Confidence 87763 345668999999999999999999998664322 222 25566665443
No 142
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.94 E-value=0.016 Score=57.36 Aligned_cols=101 Identities=24% Similarity=0.327 Sum_probs=68.4
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCch--H
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDK--V 462 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K--~ 462 (564)
...+-+|+.++++.+|+.| ..+.|+| |+ ++-.+.++...|+. ..||--+. .+.-|..| .
T Consensus 111 ~~~~~~~~~~~lq~lR~~g---~~l~iis-N~-d~r~~~~l~~~~l~--------~~fD~vv~------S~e~g~~KPDp 171 (237)
T KOG3085|consen 111 AWKYLDGMQELLQKLRKKG---TILGIIS-NF-DDRLRLLLLPLGLS--------AYFDFVVE------SCEVGLEKPDP 171 (237)
T ss_pred CceeccHHHHHHHHHHhCC---eEEEEec-CC-cHHHHHHhhccCHH--------Hhhhhhhh------hhhhccCCCCh
Confidence 4567788889999999998 7888888 55 77788777766642 11221111 11223334 2
Q ss_pred HHHHHHHHHhCCCCCccEEEEcCC-ccchhhhhhcCc-cEEEcCC
Q 008479 463 QAFNNTLEKYGTDRKNLSVYIGDS-VGDLLCLLEADI-GIVIGSS 505 (564)
Q Consensus 463 ~~l~~l~~~~~~~~~~~viyiGDs-~~Dl~~l~~Ad~-giv~~~~ 505 (564)
++++-.++..+. .+..+++|||+ .||+..++.+|. ++++.++
T Consensus 172 ~If~~al~~l~v-~Pee~vhIgD~l~nD~~gA~~~G~~ailv~~~ 215 (237)
T KOG3085|consen 172 RIFQLALERLGV-KPEECVHIGDLLENDYEGARNLGWHAILVDNS 215 (237)
T ss_pred HHHHHHHHHhCC-ChHHeEEecCccccccHhHHHcCCEEEEEccc
Confidence 555555665555 36899999997 588999999998 7777644
No 143
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=96.89 E-value=0.001 Score=66.82 Aligned_cols=56 Identities=21% Similarity=0.363 Sum_probs=45.9
Q ss_pred CCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcC-ChhHHHHH
Q 008479 456 ESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGS-SSSLRRVG 512 (564)
Q Consensus 456 ~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~-~~~L~~~~ 512 (564)
..+.+|...++.+++..+.+ ..+++++|||.||++|+..+++|+++++ .+.+++.|
T Consensus 184 ~~~~~K~~~i~~~~~~~~~~-~~~~~~~GD~~nD~~m~~~~~~~~a~~na~~~~k~~a 240 (256)
T TIGR00099 184 AKGVSKGSALQSLAEALGIS-LEDVIAFGDGMNDIEMLEAAGYGVAMGNADEELKALA 240 (256)
T ss_pred CCCCChHHHHHHHHHHcCCC-HHHEEEeCCcHHhHHHHHhCCceeEecCchHHHHHhC
Confidence 35678999999999887763 4789999999999999999999999973 34555444
No 144
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=96.84 E-value=0.0034 Score=56.33 Aligned_cols=93 Identities=12% Similarity=-0.007 Sum_probs=63.6
Q ss_pred CCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeE--EeeceeecCccccccccccCCCCCchHHH
Q 008479 387 SLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNV--HANEFSFKESISTGEIIEKVESPIDKVQA 464 (564)
Q Consensus 387 ~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I--~aN~l~~~~g~~tG~~~~~~~~g~~K~~~ 464 (564)
.+.||+.++++.++++| +++.|+|.+....++..+++..+. ...+ +..-+ +.+.++. ...|.+.
T Consensus 29 ~~~~gv~e~L~~Lk~~g---~~l~i~Sn~~~~~~~~~~l~~~~~-~~~i~~l~~~f---~~~~~~~-------~~pkp~~ 94 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNG---FLLALASYNDDPHVAYELLKIFED-FGIIFPLAEYF---DPLTIGY-------WLPKSPR 94 (128)
T ss_pred HHHHHHHHHHHHHHHCC---eEEEEEeCCCCHHHHHHHHHhccc-cccchhhHhhh---hhhhhcC-------CCcHHHH
Confidence 67899999999999999 999999998558888888876541 0000 11111 1111111 1136777
Q ss_pred HHHHHHHhC--CCCCccEEEEcCCccchhhhh
Q 008479 465 FNNTLEKYG--TDRKNLSVYIGDSVGDLLCLL 494 (564)
Q Consensus 465 l~~l~~~~~--~~~~~~viyiGDs~~Dl~~l~ 494 (564)
+...++..+ . .+.+++||||+..|+....
T Consensus 95 ~~~a~~~lg~~~-~p~~~l~igDs~~n~~~~~ 125 (128)
T TIGR01681 95 LVEIALKLNGVL-KPKSILFVDDRPDNNEEVD 125 (128)
T ss_pred HHHHHHHhcCCC-CcceEEEECCCHhHHHHHH
Confidence 777777776 5 3589999999999987654
No 145
>PLN02382 probable sucrose-phosphatase
Probab=96.82 E-value=0.0016 Score=70.16 Aligned_cols=57 Identities=23% Similarity=0.223 Sum_probs=46.8
Q ss_pred CCCCchHHHHHHHHHHh---CCCCCccEEEEcCCccchhhhhhcC-ccEEEc-CChhHHHHHH
Q 008479 456 ESPIDKVQAFNNTLEKY---GTDRKNLSVYIGDSVGDLLCLLEAD-IGIVIG-SSSSLRRVGS 513 (564)
Q Consensus 456 ~~g~~K~~~l~~l~~~~---~~~~~~~viyiGDs~~Dl~~l~~Ad-~giv~~-~~~~L~~~~~ 513 (564)
..+.+|...++.+++.. +.+ ..+++++|||.||++|+..++ +||+|+ +.+.+++.+.
T Consensus 171 p~g~sKg~Al~~L~~~~~~~gi~-~~~~iafGDs~NDleMl~~ag~~gvam~NA~~elk~~a~ 232 (413)
T PLN02382 171 PQGAGKGQALAYLLKKLKAEGKA-PVNTLVCGDSGNDAELFSVPDVYGVMVSNAQEELLQWYA 232 (413)
T ss_pred eCCCCHHHHHHHHHHHhhhcCCC-hhcEEEEeCCHHHHHHHhcCCCCEEEEcCCcHHHHHHHH
Confidence 35678999999999887 553 478999999999999999999 699998 4467776653
No 146
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=96.82 E-value=0.0044 Score=74.75 Aligned_cols=112 Identities=19% Similarity=0.159 Sum_probs=73.3
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCC--ceeE---Eeec---------------------
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLN--ALNV---HANE--------------------- 439 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~--~~~I---~aN~--------------------- 439 (564)
=++|||..+.++.|++.| +++.++||-- .+-...+..+.|+- +..+ -.+.
T Consensus 630 D~lq~~v~etI~~L~~AG---Ikv~mlTGD~-~~TA~~IA~~~~ii~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~ 705 (1057)
T TIGR01652 630 DKLQEGVPETIELLRQAG---IKIWVLTGDK-VETAINIGYSCRLLSRNMEQIVITSESLDATRSVEAAIKFGLEGTSEE 705 (1057)
T ss_pred hhhhhccHHHHHHHHHCC---CeEEEEcCCc-HHHHHHHHHHhCCCCCCCeEEEEecCchhhhHHHHHHHHHHHHHHHHh
Confidence 389999999999999999 9999999863 56666666665541 1111 1110
Q ss_pred -----------eeecCcc----cccc----c----------cccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccch
Q 008479 440 -----------FSFKESI----STGE----I----------IEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDL 490 (564)
Q Consensus 440 -----------l~~~~g~----~tG~----~----------~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl 490 (564)
+..++.. .... + ..--+++.+|.++++.+++.. +..+.++|||.||.
T Consensus 706 ~~~~~~~~~~~lvi~G~~l~~~l~~~~~~~f~~l~~~~~~vV~aR~sP~qK~~IV~~lk~~~----~~~vl~iGDG~ND~ 781 (1057)
T TIGR01652 706 FNNLGDSGNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVSPSQKADVVRLVKKST----GKTTLAIGDGANDV 781 (1057)
T ss_pred hhhhccCCceEEEEccHHHHHHHhhHHHHHHHHHHhhCCEEEEeCCCHHHHHHHHHHHHhcC----CCeEEEEeCCCccH
Confidence 1111110 0000 0 001234578988888776531 35678999999999
Q ss_pred hhhhhcCccEEEcCC
Q 008479 491 LCLLEADIGIVIGSS 505 (564)
Q Consensus 491 ~~l~~Ad~giv~~~~ 505 (564)
+|++.|||||.+..+
T Consensus 782 ~mlk~AdVGIgi~g~ 796 (1057)
T TIGR01652 782 SMIQEADVGVGISGK 796 (1057)
T ss_pred HHHhhcCeeeEecCh
Confidence 999999999988544
No 147
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.78 E-value=0.0014 Score=66.60 Aligned_cols=51 Identities=29% Similarity=0.310 Sum_probs=42.8
Q ss_pred CCCchHHHHHHHHHHhCCCCC-ccEEEEcCCccchhhhhhcCccEEEcC-ChhHH
Q 008479 457 SPIDKVQAFNNTLEKYGTDRK-NLSVYIGDSVGDLLCLLEADIGIVIGS-SSSLR 509 (564)
Q Consensus 457 ~g~~K~~~l~~l~~~~~~~~~-~~viyiGDs~~Dl~~l~~Ad~giv~~~-~~~L~ 509 (564)
.+ .|...++.+.+..+. .. ..+++||||.||++|+..|++|+++++ .+.++
T Consensus 188 ~~-~Kg~al~~l~~~~~i-~~~~~v~~~GDs~NDi~m~~~ag~~vam~NA~~~~k 240 (273)
T PRK00192 188 GG-DKGKAVRWLKELYRR-QDGVETIALGDSPNDLPMLEAADIAVVVPGPDGPNP 240 (273)
T ss_pred CC-CHHHHHHHHHHHHhc-cCCceEEEEcCChhhHHHHHhCCeeEEeCCCCCCCc
Confidence 45 799999999887776 36 899999999999999999999999984 34444
No 148
>PLN03190 aminophospholipid translocase; Provisional
Probab=96.78 E-value=0.0041 Score=75.15 Aligned_cols=46 Identities=22% Similarity=0.401 Sum_probs=35.6
Q ss_pred CCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCC
Q 008479 456 ESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS 505 (564)
Q Consensus 456 ~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~ 505 (564)
+++..|.++++.+++.. +..+.+||||.||.+|++.|||||.+..+
T Consensus 854 ~sP~QKa~IV~~vk~~~----~~vtlaIGDGaNDv~mIq~AdVGIGIsG~ 899 (1178)
T PLN03190 854 VAPLQKAGIVALVKNRT----SDMTLAIGDGANDVSMIQMADVGVGISGQ 899 (1178)
T ss_pred CCHHHHHHHHHHHHhcC----CcEEEEECCCcchHHHHHhcCeeeeecCc
Confidence 34568888887666531 24578999999999999999999987544
No 149
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=96.75 E-value=0.0032 Score=63.13 Aligned_cols=75 Identities=27% Similarity=0.363 Sum_probs=50.0
Q ss_pred HHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCcc
Q 008479 420 LIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG 499 (564)
Q Consensus 420 ~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g 499 (564)
-|+..|+..|+...-|++|. +...-++.+.+|..+++-++...+.+ ..+++.+|||-||++||..+..|
T Consensus 135 ~i~~~l~~~~l~~~~i~s~~----------~~ldilP~~a~K~~Al~~L~~~~~~~-~~~vl~aGDSgND~~mL~~~~~~ 203 (247)
T PF05116_consen 135 EIRARLRQRGLRVNVIYSNG----------RDLDILPKGASKGAALRYLMERWGIP-PEQVLVAGDSGNDLEMLEGGDHG 203 (247)
T ss_dssp HHHHHHHCCTCEEEEEECTC----------CEEEEEETT-SHHHHHHHHHHHHT---GGGEEEEESSGGGHHHHCCSSEE
T ss_pred HHHHHHHHcCCCeeEEEccc----------eeEEEccCCCCHHHHHHHHHHHhCCC-HHHEEEEeCCCCcHHHHcCcCCE
Confidence 46666777775322233332 11111234556999999999988763 47899999999999999888889
Q ss_pred EEEcCC
Q 008479 500 IVIGSS 505 (564)
Q Consensus 500 iv~~~~ 505 (564)
|++++.
T Consensus 204 vvV~Na 209 (247)
T PF05116_consen 204 VVVGNA 209 (247)
T ss_dssp EE-TTS
T ss_pred EEEcCC
Confidence 999844
No 150
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=96.75 E-value=0.0016 Score=64.35 Aligned_cols=47 Identities=28% Similarity=0.333 Sum_probs=39.4
Q ss_pred CCCchHHHHHHHHHHhCCC-CCccEEEEcCCccchhhhhhcCccEEEc
Q 008479 457 SPIDKVQAFNNTLEKYGTD-RKNLSVYIGDSVGDLLCLLEADIGIVIG 503 (564)
Q Consensus 457 ~g~~K~~~l~~l~~~~~~~-~~~~viyiGDs~~Dl~~l~~Ad~giv~~ 503 (564)
.+.+|...++.++...+.. ....++++|||.||++|++.||+||+++
T Consensus 178 ~~~sK~~al~~l~~~~~~~~~~~~~i~~GD~~nD~~ml~~ag~~v~v~ 225 (225)
T TIGR02461 178 GGSDKGKAIKRLLDLYKLRPGAIESVGLGDSENDFPMFEVVDLAFLVG 225 (225)
T ss_pred CCCCHHHHHHHHHHHhccccCcccEEEEcCCHHHHHHHHhCCCcEecC
Confidence 3778999999988776542 2357999999999999999999999885
No 151
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=96.74 E-value=0.0067 Score=60.74 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=45.7
Q ss_pred CCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhh-cCccEEEc-CChhHHHHHH
Q 008479 457 SPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLE-ADIGIVIG-SSSSLRRVGS 513 (564)
Q Consensus 457 ~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~-Ad~giv~~-~~~~L~~~~~ 513 (564)
.+.+|...++.+++..+.+ ..+++++|||.||+.|+.. ++.||+++ +.+.+++.+.
T Consensus 164 ~~~~K~~al~~l~~~~~i~-~~~~i~~GD~~ND~~ml~~~~~~~va~~na~~~~k~~~~ 221 (249)
T TIGR01485 164 QGSGKGQALQYLLQKLAME-PSQTLVCGDSGNDIELFEIGSVRGVIVSNAQEELLQWYD 221 (249)
T ss_pred CCCChHHHHHHHHHHcCCC-ccCEEEEECChhHHHHHHccCCcEEEECCCHHHHHHHHH
Confidence 5668999999999887763 5789999999999999998 66799997 4456776654
No 152
>cd00232 HemeO Heme oxygenase catalyzes the rate limiting step in the degradation of heme to bilirubin, it is essential for recycling of iron from heme. Heme is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide. This family includes bacterial HO, as well as the mammalian isoforms HO-1, and HO-2. Heme oxygenases play key roles in heme homeostasis, oxidative stress response, photosynthetic pigment formation in cyanobacteria, cellular signaling in mammals, and iron acquisition from host heme by bacterial pathogens.
Probab=96.65 E-value=0.33 Score=46.85 Aligned_cols=187 Identities=16% Similarity=0.050 Sum_probs=109.9
Q ss_pred hHHHHHHHHhHHhHHHhhcChHHHHhhcCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHH
Q 008479 15 GLARRLWIKFKRESVFAMYSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQAYELAEECAD----DDDAKLSISELRKG 90 (564)
Q Consensus 15 ~~~~~lw~~~~~~~~~~~~hpFv~~la~GtL~~~~f~~Yl~QD~~YL~~~~r~~~~~~~~a~----~~~~~~~l~~~~~~ 90 (564)
+|+.+|-......-...=+|||++.|..|+++.+.++.||.+-+.+....-+.+........ ..+...... .
T Consensus 1 ~~~~~Lr~~T~~~H~~~e~~~~~~~l~~~~~s~~~Y~~~L~~~~~~~~~lE~~l~~~~~~~~~~~~~~~~~~r~~----~ 76 (203)
T cd00232 1 SLSEELRAATRQLHEEAENLVFMKDLLKGFLSREGYARFLANLYLVYRALEALLEASKDNPYLAPLYLPELERAA----A 76 (203)
T ss_pred CHHHHHHHHHHHHHHHHHchHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccCccccchH----H
Confidence 35666666555444445579999999999999999999999999999888887776543211 111111110 1
Q ss_pred HHHHHHHHHHHHHHhCCCcc-cccCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHH--
Q 008479 91 VLEELKMHDSFVKEWGTDLA-KMATVNSATVKYTEFLLATASGKVEGVKGPGKLATPFEKTKVAAYTLGAMSPCMRLY-- 167 (564)
Q Consensus 91 i~~E~~~h~~~~~~~gi~~~-~~~~~~pa~~~Y~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~l~Al~pC~~~Y-- 167 (564)
+..- ++.+|.+.. ....|.+++ .|.+++...+..+ ++.++++++.-+-.=
T Consensus 77 L~~D-------L~~lg~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------------------~~~~lg~~YV~egs~l~ 129 (203)
T cd00232 77 LEKD-------LAYLGGSDWRVREPPLPAA-AYAARLREIAEEN-------------------PALLLGHAYVRYGADLS 129 (203)
T ss_pred HHHH-------HHHHhCCCccccCCCChHH-HHHHHHHHHHhcC-------------------HHHHHHHHHHHHHHHhc
Confidence 1111 234555543 234456677 9999888776543 245667666655321
Q ss_pred --HHHHHHHHhhccCCCCcccccccccccCChhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH
Q 008479 168 --AFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKLSVSLTGEELDIIEKLYHQAMKLEV 237 (564)
Q Consensus 168 --~~i~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~F~~~~~lE~ 237 (564)
..|.+.+.+..+. + ..=-.+...|..++-...-..+.+.+|.+ ..++++.+++.+-=..+-++=.
T Consensus 130 GG~~i~~~l~~~~~~--~-~~~~~f~~~~g~~~~~~~w~~f~~~l~~~--~~~~~~~~~~i~~A~~~F~~~~ 196 (203)
T cd00232 130 GGQVLAKIAQRALLL--E-GKGLAFYAFHGIADRGLFKREFREALDAL--PLDEEERQRVVAEARAAFRLNG 196 (203)
T ss_pred ccHHHHHHHHHHhCC--C-CccCccccCCCcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 2233334433221 1 12233555665345666677788888886 3577777776655555544433
No 153
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.55 E-value=0.0061 Score=62.68 Aligned_cols=106 Identities=4% Similarity=-0.160 Sum_probs=66.8
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCc---eeEEeeceeecCccccccccccCCCCCchH
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA---LNVHANEFSFKESISTGEIIEKVESPIDKV 462 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~---~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 462 (564)
..+.||+.++++.++++| ++++|+|+.- ....+.+++.+++.. ..|++-. .+..+......+-.+.
T Consensus 186 ~~~~~~~~~~l~~l~~~g---~~i~i~T~r~-~~~~~~~l~~l~~~~~~f~~i~~~~-------~~~~~~~~~~~~kp~p 254 (300)
T PHA02530 186 DKPNPMVVELVKMYKAAG---YEIIVVSGRD-GVCEEDTVEWLRQTDIWFDDLIGRP-------PDMHFQREQGDKRPDD 254 (300)
T ss_pred CCCChhHHHHHHHHHhCC---CEEEEEeCCC-hhhHHHHHHHHHHcCCchhhhhCCc-------chhhhcccCCCCCCcH
Confidence 467899999999999998 9999999985 788888887765421 0111111 0000111111111223
Q ss_pred HHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEE
Q 008479 463 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVI 502 (564)
Q Consensus 463 ~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~ 502 (564)
..+...+...+...+..++||||+.+|+.+...+++.++-
T Consensus 255 ~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~ 294 (300)
T PHA02530 255 VVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLECWQ 294 (300)
T ss_pred HHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCeEEE
Confidence 3444444433332347899999999999999999986443
No 154
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=96.52 E-value=0.0062 Score=55.70 Aligned_cols=95 Identities=21% Similarity=0.369 Sum_probs=68.7
Q ss_pred CCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHHHH
Q 008479 387 SLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFN 466 (564)
Q Consensus 387 ~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~ 466 (564)
..|+|+ =++.+.+.| +.+.|+|+-= ..+++.-++..|+..+ +.| ..+|...++
T Consensus 37 nv~DG~--Gik~l~~~G---i~vAIITGr~-s~ive~Ra~~LGI~~~-------------~qG--------~~dK~~a~~ 89 (170)
T COG1778 37 NVRDGH--GIKLLLKSG---IKVAIITGRD-SPIVEKRAKDLGIKHL-------------YQG--------ISDKLAAFE 89 (170)
T ss_pred eccCcH--HHHHHHHcC---CeEEEEeCCC-CHHHHHHHHHcCCcee-------------eec--------hHhHHHHHH
Confidence 345553 123344456 9999999875 5778888888886321 233 236999999
Q ss_pred HHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCC-hhHH
Q 008479 467 NTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS-SSLR 509 (564)
Q Consensus 467 ~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~-~~L~ 509 (564)
+++.+.+.. ++++.||||-.+|++++..+++++...+. +-++
T Consensus 90 ~L~~~~~l~-~e~~ayiGDD~~Dlpvm~~vGls~a~~dAh~~v~ 132 (170)
T COG1778 90 ELLKKLNLD-PEEVAYVGDDLVDLPVMEKVGLSVAVADAHPLLK 132 (170)
T ss_pred HHHHHhCCC-HHHhhhhcCccccHHHHHHcCCcccccccCHHHH
Confidence 999998874 68999999999999999999987776533 3444
No 155
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=96.48 E-value=0.025 Score=54.24 Aligned_cols=29 Identities=10% Similarity=0.185 Sum_probs=20.6
Q ss_pred hcCCCCccHHHHHHHHHHcCCCCCcEEEEccc
Q 008479 384 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYC 415 (564)
Q Consensus 384 ~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g 415 (564)
.+++.-||+.|.++.+.+.| ...++|++.
T Consensus 70 ~~l~p~~gA~e~l~~L~~~g---~~~~~Itar 98 (191)
T PF06941_consen 70 SNLPPIPGAVEALKKLRDKG---HEIVIITAR 98 (191)
T ss_dssp TT--B-TTHHHHHHHHHTST---TEEEEEEE-
T ss_pred cCCCccHHHHHHHHHHHHcC---CcEEEEEec
Confidence 45788899999999999887 667777654
No 156
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=96.37 E-value=0.013 Score=66.36 Aligned_cols=125 Identities=20% Similarity=0.197 Sum_probs=79.8
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCC--ceeEEeec-eeecC---c---cccccccc-cC
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLN--ALNVHANE-FSFKE---S---ISTGEIIE-KV 455 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~--~~~I~aN~-l~~~~---g---~~tG~~~~-~~ 455 (564)
=+.|||.++-++.|++.| +.+-.|++.- -.-.+++..+.|+- .....|=+ -+|.+ . ..-+++.- --
T Consensus 646 DPvRPgV~~AV~~Cq~AG---ItVRMVTGDN-I~TAkAIA~eCGILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlAR 721 (1034)
T KOG0204|consen 646 DPVRPGVPEAVQLCQRAG---ITVRMVTGDN-INTAKAIARECGILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLAR 721 (1034)
T ss_pred CCCCCCcHHHHHHHHHcC---cEEEEEeCCc-HHHHHHHHHHcccccCCCccceecchhhhhcCHHHHHhhhhhheeeec
Confidence 489999999999999999 9999999864 55667777777751 11101100 01110 0 00111110 02
Q ss_pred CCCCchHHHHHHHHHHhCCCCCccEE-EEcCCccchhhhhhcCccEEEc-CChhHHHHHHhhCCceeecCc
Q 008479 456 ESPIDKVQAFNNTLEKYGTDRKNLSV-YIGDSVGDLLCLLEADIGIVIG-SSSSLRRVGSQFGVTFIPLYP 524 (564)
Q Consensus 456 ~~g~~K~~~l~~l~~~~~~~~~~~vi-yiGDs~~Dl~~l~~Ad~giv~~-~~~~L~~~~~~~gi~~~p~~~ 524 (564)
.++.||...++.+++. .+++ .-|||.||-++|+.||||+++| +....+ ++.. .++-+++
T Consensus 722 SSP~DK~lLVk~L~~~------g~VVAVTGDGTNDaPALkeADVGlAMGIaGTeVA---KEaS-DIIi~DD 782 (1034)
T KOG0204|consen 722 SSPNDKHLLVKGLIKQ------GEVVAVTGDGTNDAPALKEADVGLAMGIAGTEVA---KEAS-DIIILDD 782 (1034)
T ss_pred CCCchHHHHHHHHHhc------CcEEEEecCCCCCchhhhhcccchhccccchhhh---hhhC-CeEEEcC
Confidence 3568999988888852 3455 6899999999999999999998 444332 3332 4555544
No 157
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=96.07 E-value=0.0052 Score=59.32 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=39.5
Q ss_pred CCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEE
Q 008479 456 ESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVI 502 (564)
Q Consensus 456 ~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~ 502 (564)
..+.+|...++.+++..+.+ ...++++|||.||+.|+..++++|++
T Consensus 159 p~~~~K~~~~~~~~~~~~~~-~~~~~~~GD~~nD~~~~~~~~~~vam 204 (204)
T TIGR01484 159 PAGVDKGSALQALLKELNGK-RDEILAFGDSGNDEEMFEVAGLAVAV 204 (204)
T ss_pred cCCCChHHHHHHHHHHhCCC-HHHEEEEcCCHHHHHHHHHcCCceEC
Confidence 35778999999999887653 47899999999999999999998875
No 158
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=96.01 E-value=0.08 Score=53.25 Aligned_cols=113 Identities=12% Similarity=0.108 Sum_probs=73.1
Q ss_pred HHHHhhcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhh---cCCCceeE-Eeeceee-----cCccccc
Q 008479 379 IKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSS---AGLNALNV-HANEFSF-----KESISTG 449 (564)
Q Consensus 379 i~~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~---~g~~~~~I-~aN~l~~-----~~g~~tG 449 (564)
+.+......+.+.+.++++.++.+| ++++.+|..+ ..+....+++ .|++...- +.++..+ .+.....
T Consensus 73 i~~~~~~~lie~~~~~~i~~lq~~~---~~v~alT~~~-~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~ 148 (252)
T PF11019_consen 73 IFELRKMELIESDVPNIINSLQNKG---IPVIALTARG-PNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRA 148 (252)
T ss_pred HHhhcceEEcchhHHHHHHHHHHCC---CcEEEEcCCC-hhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCC
Confidence 4445556678889999999999998 9999999986 6667666544 45432111 1111111 1100000
Q ss_pred c-c-ccc-CCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhc
Q 008479 450 E-I-IEK-VESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEA 496 (564)
Q Consensus 450 ~-~-~~~-~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~A 496 (564)
. + .|- .++|.+|...|..++...+. .++++|||-|+.-.+..+..|
T Consensus 149 ~~~~~GIlft~~~~KG~~L~~fL~~~~~-~pk~IIfIDD~~~nl~sv~~a 197 (252)
T PF11019_consen 149 PSFYDGILFTGGQDKGEVLKYFLDKINQ-SPKKIIFIDDNKENLKSVEKA 197 (252)
T ss_pred ceeecCeEEeCCCccHHHHHHHHHHcCC-CCCeEEEEeCCHHHHHHHHHH
Confidence 0 0 011 34678999999999988765 468999999999888766553
No 159
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=95.99 E-value=0.052 Score=51.53 Aligned_cols=104 Identities=16% Similarity=0.202 Sum_probs=67.9
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEcc--cc-C-----------HHHHHHHHhhcCCCceeEEeeceeecCccccccc
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSY--CW-C-----------GDLIRASFSSAGLNALNVHANEFSFKESISTGEI 451 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~--g~-s-----------~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~ 451 (564)
..+.||..+-+..+++.| ..++|||. |. . ...+...|++.|.....|+ +.+..
T Consensus 30 ~~~~~g~i~al~~l~~~g---y~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~----------~Cph~ 96 (181)
T COG0241 30 FQFIPGVIPALLKLQRAG---YKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVKIDGIL----------YCPHH 96 (181)
T ss_pred hccCccHHHHHHHHHhCC---CeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCccceEE----------ECCCC
Confidence 578899999999999888 99999996 11 0 1224444555553212211 11111
Q ss_pred c-ccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCc-cEEEc
Q 008479 452 I-EKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI-GIVIG 503 (564)
Q Consensus 452 ~-~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~-giv~~ 503 (564)
. ..+.|---|.-.+.+++++++.+ ..++++|||..+|+.+...+++ |+.+.
T Consensus 97 p~~~c~cRKP~~gm~~~~~~~~~iD-~~~s~~VGD~~~Dlq~a~n~gi~~~~~~ 149 (181)
T COG0241 97 PEDNCDCRKPKPGMLLSALKEYNID-LSRSYVVGDRLTDLQAAENAGIKGVLVL 149 (181)
T ss_pred CCCCCcccCCChHHHHHHHHHhCCC-ccceEEecCcHHHHHHHHHCCCCceEEE
Confidence 1 11333344667888888887764 4789999999999999999998 55543
No 160
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=95.94 E-value=0.0086 Score=67.39 Aligned_cols=48 Identities=23% Similarity=0.137 Sum_probs=40.5
Q ss_pred CCCchHHHHHHHHHHhCCCCCccEEEE--cCCccchhhhhhcCccEEEcCC
Q 008479 457 SPIDKVQAFNNTLEKYGTDRKNLSVYI--GDSVGDLLCLLEADIGIVIGSS 505 (564)
Q Consensus 457 ~g~~K~~~l~~l~~~~~~~~~~~viyi--GDs~~Dl~~l~~Ad~giv~~~~ 505 (564)
.+.+|...++.+++..+... ..++.+ |||.||+.||..||+||+++..
T Consensus 610 ~gvdKG~AL~~L~e~~gI~~-~eViafalGDs~NDisMLe~Ag~gVAM~~~ 659 (694)
T PRK14502 610 GGNDKGKAIKILNELFRLNF-GNIHTFGLGDSENDYSMLETVDSPILVQRP 659 (694)
T ss_pred CCCCHHHHHHHHHHHhCCCc-cceEEEEcCCcHhhHHHHHhCCceEEEcCC
Confidence 47799999999998876543 556666 9999999999999999999744
No 161
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=95.82 E-value=0.0084 Score=60.83 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=41.9
Q ss_pred CCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhc----CccEEEcCCh
Q 008479 457 SPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEA----DIGIVIGSSS 506 (564)
Q Consensus 457 ~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~A----d~giv~~~~~ 506 (564)
.+.+|...++++++..+.. ...++|+||+.||..|+..+ ++||.++...
T Consensus 171 ~g~~Kg~al~~ll~~~~~~-~~~v~~~GD~~nD~~mf~~~~~~~g~~vavg~a~ 223 (266)
T PRK10187 171 RGTNKGEAIAAFMQEAPFA-GRTPVFVGDDLTDEAGFAVVNRLGGISVKVGTGA 223 (266)
T ss_pred CCCCHHHHHHHHHHhcCCC-CCeEEEEcCCccHHHHHHHHHhcCCeEEEECCCC
Confidence 4678999999999987653 46899999999999999999 8899998553
No 162
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=95.70 E-value=0.063 Score=55.94 Aligned_cols=104 Identities=11% Similarity=-0.016 Sum_probs=72.9
Q ss_pred CCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhh----cCCCceeEEeeceeecCccccccccccCCCCCchHH
Q 008479 388 LQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSS----AGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQ 463 (564)
Q Consensus 388 lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~----~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~ 463 (564)
+.+|+.++++.++++| +.+.|+|.+- ...+..+|++ .++. ..+.. + ......|..
T Consensus 32 ~~~~~~e~L~~L~~~G---i~lai~S~n~-~~~a~~~l~~~~~~~~~~------~~f~~---~--------~~~~~pk~~ 90 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQG---FLLALASKND-EDDAKKVFERRKDFILQA------EDFDA---R--------SINWGPKSE 90 (320)
T ss_pred cHHHHHHHHHHHHhCC---CEEEEEcCCC-HHHHHHHHHhCccccCcH------HHeeE---E--------EEecCchHH
Confidence 3789999999999999 9999999996 7889999987 3321 11111 0 001125888
Q ss_pred HHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEc-CChhHHHHHH
Q 008479 464 AFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG-SSSSLRRVGS 513 (564)
Q Consensus 464 ~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~-~~~~L~~~~~ 513 (564)
.+++++++.+.+ .+.++||||+..|+.....+...+-+. ....+.+.+.
T Consensus 91 ~i~~~~~~l~i~-~~~~vfidD~~~d~~~~~~~lp~~~~~~~~~~~~~~l~ 140 (320)
T TIGR01686 91 SLRKIAKKLNLG-TDSFLFIDDNPAERANVKITLPVKTLLCDPAELAAILL 140 (320)
T ss_pred HHHHHHHHhCCC-cCcEEEECCCHHHHHHHHHHCCCCccCCChHHHHHHhc
Confidence 899988887763 578999999999999998876443332 2334444443
No 163
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=95.51 E-value=0.066 Score=53.08 Aligned_cols=91 Identities=12% Similarity=0.126 Sum_probs=54.4
Q ss_pred CCCccHHHHHHHHHHcCCCCCcEEEEcccc--CHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHH
Q 008479 387 SLQDGCTTFFQKVVKNENLNANVHVLSYCW--CGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQA 464 (564)
Q Consensus 387 ~lr~G~~efl~~l~~~g~~~~~~~IvS~g~--s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~ 464 (564)
+.-||..+|++.++++| +.+++||+=- ....-..-|.+.|+... +.+.+... +... ......-|..+
T Consensus 115 ~aip~a~~l~~~~~~~G---~~V~~iT~R~~~~r~~T~~nL~~~G~~~~----~~l~lr~~---~~~~-~~~~~~yK~~~ 183 (229)
T PF03767_consen 115 PAIPGALELYNYARSRG---VKVFFITGRPESQREATEKNLKKAGFPGW----DHLILRPD---KDPS-KKSAVEYKSER 183 (229)
T ss_dssp EEETTHHHHHHHHHHTT---EEEEEEEEEETTCHHHHHHHHHHHTTSTB----SCGEEEEE---SSTS-S------SHHH
T ss_pred cccHHHHHHHHHHHHCC---CeEEEEecCCchhHHHHHHHHHHcCCCcc----chhccccc---cccc-cccccccchHH
Confidence 66788999999999999 9999999732 14445555666675321 12222110 0000 11123348877
Q ss_pred HHHHHHHhCCCCCccEEEEcCCccchhh
Q 008479 465 FNNTLEKYGTDRKNLSVYIGDSVGDLLC 492 (564)
Q Consensus 465 l~~l~~~~~~~~~~~viyiGDs~~Dl~~ 492 (564)
.+.+.++ ++.-+.+|||..+|+.-
T Consensus 184 r~~i~~~----Gy~Ii~~iGD~~~D~~~ 207 (229)
T PF03767_consen 184 RKEIEKK----GYRIIANIGDQLSDFSG 207 (229)
T ss_dssp HHHHHHT----TEEEEEEEESSGGGCHC
T ss_pred HHHHHHc----CCcEEEEeCCCHHHhhc
Confidence 7777663 12345589999999988
No 164
>PTZ00174 phosphomannomutase; Provisional
Probab=95.38 E-value=0.02 Score=57.35 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=42.4
Q ss_pred CCCCchHHHHHHHHHHhCCCCCccEEEEcC----CccchhhhhhcCc-cEEEc-CChhHHHHHHhh
Q 008479 456 ESPIDKVQAFNNTLEKYGTDRKNLSVYIGD----SVGDLLCLLEADI-GIVIG-SSSSLRRVGSQF 515 (564)
Q Consensus 456 ~~g~~K~~~l~~l~~~~~~~~~~~viyiGD----s~~Dl~~l~~Ad~-giv~~-~~~~L~~~~~~~ 515 (564)
..|.+|...|+.+.+. .++++++|| |.||++|+..|.. |+.++ +.+.++.+|+-+
T Consensus 184 ~~gvsKg~al~~L~~~-----~~eviafGD~~~~~~NDieMl~~~~~~g~~v~n~~~~~~~~~~~~ 244 (247)
T PTZ00174 184 PKGWDKTYCLRHLEND-----FKEIHFFGDKTFEGGNDYEIYNDPRTIGHSVKNPEDTIKILKELF 244 (247)
T ss_pred eCCCcHHHHHHHHHhh-----hhhEEEEcccCCCCCCcHhhhhcCCCceEEeCCHHHHHHHHHHHh
Confidence 4567899999999876 368999999 8999999997643 66666 456777666543
No 165
>PF12981 DUF3865: Domain of Unknown Function with PDB structure (DUF3865); InterPro: IPR024477 This entry represents a family of proteins of unknown function. The Nostoc punctiforme protein (D0VWS1 from SWISSPROT) has been structurally characterised and adopts a heme oxygenase-like fold similar to that of the Chlamydia trachomatis death domain-binding CADD protein. The proposed active sites of the Nostoc and Chlamydia sequences are identical, suggesting similar functions.; PDB: 3B5P_A 3B5O_A.
Probab=95.24 E-value=0.19 Score=48.32 Aligned_cols=202 Identities=15% Similarity=0.121 Sum_probs=107.2
Q ss_pred HHHHHHHHhHHhH-HHh-hcChHHHHhhcCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 008479 16 LARRLWIKFKRES-VFA-MYSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQAYELAEECADDDDAKLSISELRKGVLE 93 (564)
Q Consensus 16 ~~~~lw~~~~~~~-~~~-~~hpFv~~la~GtL~~~~f~~Yl~QD~~YL~~~~r~~~~~~~~a~~~~~~~~l~~~~~~i~~ 93 (564)
|+..+.+....+. .++ .++||++.|.+-++.. ...||.|=..|-++-.-.+..|+.++...-.=.+..++..++.+
T Consensus 4 ~s~~~~~~l~~d~~~fs~nn~~~~~~i~t~S~~~--~~~vi~~ys~F~~~~~~~l~~A~~~~~~~~~~~V~~El~~Ni~E 81 (231)
T PF12981_consen 4 FSTQLNQWLTMDHYQFSINNNPFLSHISTASFSQ--KELVIKQYSVFPKYNCGMLQRAAYCIRGFCWPGVAQELQRNINE 81 (231)
T ss_dssp HHHHHHHHHHHH-GGG-TTT-CCHHGCCC--HHH--HHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhhhcCCHHHHHhhhhhHHH--HHHHHHHHhHhhHHHHHHHHHHHHHHhhcCCcHHHHHHHHhHHH
Confidence 4455554443332 233 6899999887766554 44555554446666555555555554322222355667778888
Q ss_pred HHH----------HHHHHHHH-hCCCcccccCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCchhhhhhHHHHHHHHHH
Q 008479 94 ELK----------MHDSFVKE-WGTDLAKMATVNSATVKYTEFLLATASGKVEGVKGPGKLATPFEKTKVAAYTLGAMSP 162 (564)
Q Consensus 94 E~~----------~h~~~~~~-~gi~~~~~~~~~pa~~~Y~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~l~Al~p 162 (564)
|.. ++..-+.. +|.+.. ...|+++|+...+=+.....-+. -++++|++.
T Consensus 82 E~G~~~gk~sHy~~~~~~l~~~~~~~v~-~~~Ps~aT~~fl~sv~~L~t~~~-------------------s~vlGa~YA 141 (231)
T PF12981_consen 82 EMGEGCGKISHYVVFRKALHTYFGFDVN-NRMPSVATTHFLDSVLALFTWDS-------------------SEVLGACYA 141 (231)
T ss_dssp HTTTTTTT--HHHHHHHHHHHHHS---T-T----HHHHHHHHHHHHHCTS-H-------------------HHHHHHHHH
T ss_pred hcCCCCCCcchHHHHHHHHHHHhCCccc-ccCCcHHHHHHHHHHHHHhCCCH-------------------HHHHHHHHH
Confidence 876 55554444 887665 46799999999888888764322 255666655
Q ss_pred HH-------HHHHHHHHHHHhhccCCCCcccccccccccCChhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 008479 163 CM-------RLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKLSVSLTGEELDIIEKLYHQAMKL 235 (564)
Q Consensus 163 C~-------~~Y~~i~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~F~~~~~l 235 (564)
-+ -+-.+|..+++...+..-+...- ++.+.+-++-=.+..+.+.+.++.... +++++...++=|..++..
T Consensus 142 tE~~AIpEl~ll~ei~~~la~rk~~~~~~s~l-~F~d~HlDg~E~~H~d~L~~~l~~~i~--~e~q~~~f~~Gf~~mI~~ 218 (231)
T PF12981_consen 142 TEAAAIPELQLLYEIVNELAQRKGLHNSWSQL-DFYDWHLDGTEQEHKDGLRQFLASYID--TEEQMPLFKDGFLAMIDI 218 (231)
T ss_dssp HHHHHHHHHHHHHHHHTTT---HHHHH-------HHHHHCS----HHHHHHHHHHHTT----GGG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCcchhhh-HHHHHhcchHHHHHHHHHHHHHHHHcC--cchhHHHHHHHHHHHHHH
Confidence 44 22333333333211100011111 344445556667888899999998753 344688889999999999
Q ss_pred HHHhhcc
Q 008479 236 EVEFFCA 242 (564)
Q Consensus 236 E~~Fw~~ 242 (564)
=..||.+
T Consensus 219 m~~wW~~ 225 (231)
T PF12981_consen 219 MEDWWKE 225 (231)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8899975
No 166
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=95.10 E-value=0.046 Score=60.62 Aligned_cols=99 Identities=14% Similarity=0.124 Sum_probs=61.3
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHH-HHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHH
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGD-LIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQA 464 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~-~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~ 464 (564)
+.=|.++..-++.++.++ .-..|++|. |-. .|+..-.+. +++.|- .+ .+.+--|++..|.++
T Consensus 710 v~sr~dah~eL~~lR~k~---~~aLvi~G~-Sl~~cl~yye~Ef----~el~~~--------~~-aVv~CRctPtQKA~v 772 (1051)
T KOG0210|consen 710 VTSRGDAHNELNNLRRKT---DCALVIDGE-SLEFCLKYYEDEF----IELVCE--------LP-AVVCCRCTPTQKAQV 772 (1051)
T ss_pred cCCchHHHHHHHHhhcCC---CcEEEEcCc-hHHHHHHHHHHHH----HHHHHh--------cC-cEEEEecChhHHHHH
Confidence 455677777777887765 567777763 222 222111110 111110 00 111113677889999
Q ss_pred HHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCC
Q 008479 465 FNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS 505 (564)
Q Consensus 465 l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~ 505 (564)
.+-+.+.. +.++.+||||-||..|+..||+||-+-++
T Consensus 773 ~~llq~~t----~krvc~IGDGGNDVsMIq~A~~GiGI~gk 809 (1051)
T KOG0210|consen 773 VRLLQKKT----GKRVCAIGDGGNDVSMIQAADVGIGIVGK 809 (1051)
T ss_pred HHHHHHhh----CceEEEEcCCCccchheeecccceeeecc
Confidence 88777654 36899999999999999999998877544
No 167
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=94.86 E-value=0.99 Score=44.44 Aligned_cols=107 Identities=10% Similarity=0.057 Sum_probs=65.1
Q ss_pred HhhcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcC-C-Cc-eeEEe-eceeecCccccccccccCCC
Q 008479 382 AGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAG-L-NA-LNVHA-NEFSFKESISTGEIIEKVES 457 (564)
Q Consensus 382 ~~~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g-~-~~-~~I~a-N~l~~~~g~~tG~~~~~~~~ 457 (564)
......+.||..++++.++.+| +|+.+.|..- ..-.+..++.++ + .. .++++ ..-++ ..
T Consensus 87 ~~~~~~~~PGa~kLv~~L~~~g---ip~alat~s~-~~~~~~k~~~~~~~~~~f~~~v~~d~~~v-------------~~ 149 (222)
T KOG2914|consen 87 LFMNSILMPGAEKLVNHLKNNG---IPVALATSST-SASFELKISRHEDIFKNFSHVVLGDDPEV-------------KN 149 (222)
T ss_pred hccccccCCcHHHHHHHHHhCC---CCeeEEecCC-cccHHHHHHHhhHHHHhcCCCeecCCccc-------------cC
Confidence 3447889999999999999999 9999999874 344444444443 1 00 01111 11111 11
Q ss_pred CCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCC
Q 008479 458 PIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS 505 (564)
Q Consensus 458 g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~ 505 (564)
|-.....+-.-.+..+...+++++.+.||.+=+.+.+.|+.-+++-++
T Consensus 150 gKP~Pdi~l~A~~~l~~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~ 197 (222)
T KOG2914|consen 150 GKPDPDIYLKAAKRLGVPPPSKCLVFEDSPVGVQAAKAAGMQVVGVAT 197 (222)
T ss_pred CCCCchHHHHHHHhcCCCCccceEEECCCHHHHHHHHhcCCeEEEecC
Confidence 111212222222333332237899999999999999999987666555
No 168
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=94.83 E-value=0.98 Score=43.90 Aligned_cols=113 Identities=11% Similarity=0.180 Sum_probs=75.3
Q ss_pred CHHHHHHHhh------cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCce--eEEeeceeecCcc
Q 008479 375 NLEDIKKAGE------RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNAL--NVHANEFSFKESI 446 (564)
Q Consensus 375 ~~~~i~~~~~------~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~--~I~aN~l~~~~g~ 446 (564)
+.++..+++. .+..++-.++++-.++.++ ..|++.+. ..=...+|...|+... .|+|
T Consensus 82 d~deY~~~V~~~LPlq~LkPD~~LRnlLL~l~~r~-----k~~FTNa~-k~HA~r~Lk~LGieDcFegii~--------- 146 (244)
T KOG3109|consen 82 DADEYHRFVHGRLPLQDLKPDPVLRNLLLSLKKRR-----KWIFTNAY-KVHAIRILKKLGIEDCFEGIIC--------- 146 (244)
T ss_pred CHHHHHHHhhccCcHhhcCCCHHHHHHHHhCcccc-----EEEecCCc-HHHHHHHHHHhChHHhccceeE---------
Confidence 4677777654 4455555789998888653 78999887 6666667888886321 2222
Q ss_pred ccccccccCCCCCchH--HHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCc-cEEEc
Q 008479 447 STGEIIEKVESPIDKV--QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI-GIVIG 503 (564)
Q Consensus 447 ~tG~~~~~~~~g~~K~--~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~-giv~~ 503 (564)
.+...+.-.+-.||. ..++......+++++.+++++-||.+-+...+..|. +++++
T Consensus 147 -~e~~np~~~~~vcKP~~~afE~a~k~agi~~p~~t~FfDDS~~NI~~ak~vGl~tvlv~ 205 (244)
T KOG3109|consen 147 -FETLNPIEKTVVCKPSEEAFEKAMKVAGIDSPRNTYFFDDSERNIQTAKEVGLKTVLVG 205 (244)
T ss_pred -eeccCCCCCceeecCCHHHHHHHHHHhCCCCcCceEEEcCchhhHHHHHhccceeEEEE
Confidence 222221112223453 566777777777778999999999999999999998 45555
No 169
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=94.79 E-value=0.17 Score=50.40 Aligned_cols=87 Identities=17% Similarity=0.261 Sum_probs=56.5
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHH--HHHhhcCCCc---eeEEeeceeecCccccccccccCCCCC
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIR--ASFSSAGLNA---LNVHANEFSFKESISTGEIIEKVESPI 459 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~--~~l~~~g~~~---~~I~aN~l~~~~g~~tG~~~~~~~~g~ 459 (564)
...+.||+.+++++++++| ++++|+|.+- ....+ ..|++.|++. ..|+++. .
T Consensus 22 ~~~~~pga~e~L~~L~~~G---~~~~ivTN~~-~~~~~~~~~L~~~gl~~~~~~~Ii~s~----------~--------- 78 (242)
T TIGR01459 22 GNHTYPGAVQNLNKIIAQG---KPVYFVSNSP-RNIFSLHKTLKSLGINADLPEMIISSG----------E--------- 78 (242)
T ss_pred CCccCccHHHHHHHHHHCC---CEEEEEeCCC-CChHHHHHHHHHCCCCccccceEEccH----------H---------
Confidence 3567899999999999999 9999999874 55544 6778777642 1122211 0
Q ss_pred chHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhh
Q 008479 460 DKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLE 495 (564)
Q Consensus 460 ~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~ 495 (564)
.-...+....++.+. .+..++++||+..|+..+..
T Consensus 79 ~~~~~l~~~~~~~~~-~~~~~~~vGd~~~d~~~~~~ 113 (242)
T TIGR01459 79 IAVQMILESKKRFDI-RNGIIYLLGHLENDIINLMQ 113 (242)
T ss_pred HHHHHHHhhhhhccC-CCceEEEeCCcccchhhhcC
Confidence 011344444433322 23679999999999877644
No 170
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=94.64 E-value=0.22 Score=55.25 Aligned_cols=116 Identities=12% Similarity=0.068 Sum_probs=72.3
Q ss_pred CCccHHHHHHHHHHcCCCCCcEEEEccccC-----------HHHHHHHHhhcCCCceeEEeeceeecCccccccccccCC
Q 008479 388 LQDGCTTFFQKVVKNENLNANVHVLSYCWC-----------GDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVE 456 (564)
Q Consensus 388 lr~G~~efl~~l~~~g~~~~~~~IvS~g~s-----------~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~ 456 (564)
+.||+.+.|+.++++| +.++|+|.--. ...+..+++++|++..-++|-+ + +.
T Consensus 198 l~pgV~e~L~~L~~~G---y~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgipfdviia~~----~----~~------ 260 (526)
T TIGR01663 198 IFPEIPEKLKELEADG---FKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVPFQVFIAIG----A----GF------ 260 (526)
T ss_pred cccCHHHHHHHHHHCC---CEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCceEEEEeCC----C----CC------
Confidence 5689999999999999 99999997320 1357888888887533233321 0 00
Q ss_pred CCCchHHHHHHHHHHhC----CCCCccEEEEcCCccchhhhhhcCccEEEc-CChhHHHHHHhhCCceeecC
Q 008479 457 SPIDKVQAFNNTLEKYG----TDRKNLSVYIGDSVGDLLCLLEADIGIVIG-SSSSLRRVGSQFGVTFIPLY 523 (564)
Q Consensus 457 ~g~~K~~~l~~l~~~~~----~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~-~~~~L~~~~~~~gi~~~p~~ 523 (564)
+.--+...+..++...+ . ...+++||||+.+|+.+...|+.. -. -+.+=+.+|..-||+|..-.
T Consensus 261 ~RKP~pGm~~~a~~~~~~~~~I-d~~~S~~VGDaagr~~~g~~ag~~--~~D~s~~D~~FA~n~gi~F~tPe 329 (526)
T TIGR01663 261 YRKPLTGMWDHLKEEANDGTEI-QEDDCFFVGDAAGRPANGKAAGKK--KKDFSCADRLFAANLGIPFATPE 329 (526)
T ss_pred CCCCCHHHHHHHHHhcCcccCC-CHHHeEEeCCcccchHHHHhcCCC--cCCCChhhHHHHHHcCCcccChH
Confidence 11112344555555442 2 247899999999999887766520 00 01233567788888887443
No 171
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=94.42 E-value=0.57 Score=46.30 Aligned_cols=90 Identities=17% Similarity=0.217 Sum_probs=56.7
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEcccc--CHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCC-Cch
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCW--CGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESP-IDK 461 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~--s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g-~~K 461 (564)
..+.-||..+|++.++++| +.++++|+=. ........|.+.|++.. .+|...+. +. ...+. .-|
T Consensus 118 ~apaip~al~l~~~l~~~G---~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~----~~LiLR~~---~d---~~~~~~~yK 184 (229)
T TIGR01675 118 AAPALPEGLKLYQKIIELG---IKIFLLSGRWEELRNATLDNLINAGFTGW----KHLILRGL---ED---SNKTVVTYK 184 (229)
T ss_pred CCCCCHHHHHHHHHHHHCC---CEEEEEcCCChHHHHHHHHHHHHcCCCCc----CeeeecCC---CC---CCchHhHHH
Confidence 4578899999999999999 9999999853 12336667777776421 22333210 00 00011 127
Q ss_pred HHHHHHHHHHhCCCCCccEE-EEcCCccchhh
Q 008479 462 VQAFNNTLEKYGTDRKNLSV-YIGDSVGDLLC 492 (564)
Q Consensus 462 ~~~l~~l~~~~~~~~~~~vi-yiGDs~~Dl~~ 492 (564)
..+.+++.++ +.+|+ .|||-.+|+.-
T Consensus 185 s~~R~~l~~~-----GYrIv~~iGDq~sDl~G 211 (229)
T TIGR01675 185 SEVRKSLMEE-----GYRIWGNIGDQWSDLLG 211 (229)
T ss_pred HHHHHHHHhC-----CceEEEEECCChHHhcC
Confidence 7776666652 34555 79999999954
No 172
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=94.41 E-value=0.021 Score=53.38 Aligned_cols=94 Identities=11% Similarity=0.073 Sum_probs=58.4
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQA 464 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~ 464 (564)
-+..|||+.+|++.+.++ .+++|.|++- ..+++.++...+... .++...+--++...+. .+ .
T Consensus 40 ~v~~RPgl~eFL~~l~~~----yei~I~Ts~~-~~yA~~il~~ldp~~-~~f~~~l~r~~~~~~~----------~~--~ 101 (162)
T TIGR02251 40 YVFKRPHVDEFLERVSKW----YELVIFTASL-EEYADPVLDILDRGG-KVISRRLYRESCVFTN----------GK--Y 101 (162)
T ss_pred EEEECCCHHHHHHHHHhc----CEEEEEcCCc-HHHHHHHHHHHCcCC-CEEeEEEEccccEEeC----------CC--E
Confidence 478999999999999864 7899999995 999999998866421 1222221111111100 01 1
Q ss_pred HHHHHHHhCCCCCccEEEEcCCccchhhhhhcCc
Q 008479 465 FNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI 498 (564)
Q Consensus 465 l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~ 498 (564)
++.+. ..+. ...++|+|||+..|..+-..+++
T Consensus 102 ~K~L~-~l~~-~~~~vIiVDD~~~~~~~~~~NgI 133 (162)
T TIGR02251 102 VKDLS-LVGK-DLSKVIIIDNSPYSYSLQPDNAI 133 (162)
T ss_pred EeEch-hcCC-ChhhEEEEeCChhhhccCccCEe
Confidence 11111 1111 23689999999998876666654
No 173
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=94.33 E-value=0.24 Score=48.76 Aligned_cols=114 Identities=16% Similarity=0.182 Sum_probs=70.0
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHH-HH---HHHhhcCCCceeEEeeceeecCccccccccccCCCCCc
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDL-IR---ASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPID 460 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~-I~---~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~ 460 (564)
....-||+.||+++..++| ..++-||.- ..+- .. .-|.+.|++.+ .=-.+.+. .....
T Consensus 120 ~sk~vpGA~eFl~Yvn~~G---g~ifyiSNR-~~~~~~~~T~~nLk~~g~~~~--~~~~~llk------------k~~k~ 181 (274)
T COG2503 120 KSKAVPGAVEFLNYVNSNG---GKIFYISNR-DQENEKDGTIENLKSEGLPQV--LESHLLLK------------KDKKS 181 (274)
T ss_pred ccccCccHHHHHHHHHhcC---cEEEEEecc-chhcccchhHHHHHHcCcccc--cccceEEe------------eCCCc
Confidence 3466799999999999999 899999963 2222 11 12334454321 00011111 12234
Q ss_pred hHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEc-CChhHHHHHHhhCCceeecCc
Q 008479 461 KVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG-SSSSLRRVGSQFGVTFIPLYP 524 (564)
Q Consensus 461 K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~-~~~~L~~~~~~~gi~~~p~~~ 524 (564)
|..+.+.+.+. ...|.+|||...|+.-....+- -. ...-+.+..+.||-.|+-+..
T Consensus 182 Ke~R~~~v~k~-----~~iVm~vGDNl~DF~d~~~k~~---~~eR~Alv~~~~~~FGk~~Ii~pN 238 (274)
T COG2503 182 KEVRRQAVEKD-----YKIVMLVGDNLDDFGDNAYKKA---EAERRALVKQNQKKFGKKFIILPN 238 (274)
T ss_pred HHHHHHHHhhc-----cceeeEecCchhhhcchhhhhh---hHHHHHHHHHHHHHhCceEEEecC
Confidence 66666665552 3567799999999977666551 11 123578888999988886653
No 174
>PLN02423 phosphomannomutase
Probab=94.23 E-value=0.064 Score=53.67 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=43.5
Q ss_pred CCCCCchHHHHHHHHHHhCCCCCccEEEEcC----CccchhhhhhcCc-cEEEcCChhHHHHHHh
Q 008479 455 VESPIDKVQAFNNTLEKYGTDRKNLSVYIGD----SVGDLLCLLEADI-GIVIGSSSSLRRVGSQ 514 (564)
Q Consensus 455 ~~~g~~K~~~l~~l~~~~~~~~~~~viyiGD----s~~Dl~~l~~Ad~-giv~~~~~~L~~~~~~ 514 (564)
...|.+|...|+.+. ..+.++++|| +.||++|+...++ |+.+.+.+.+.+.|.+
T Consensus 184 ~~~gvnKg~al~~L~------~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~~~~~~~~~~~ 242 (245)
T PLN02423 184 FPQGWDKTYCLQFLE------DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVTSPDDTREQCTA 242 (245)
T ss_pred eeCCCCHHHHHHHhc------CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeCCHHHHHHHHHH
Confidence 345778999999998 1478999999 8999999998776 8888766666666654
No 175
>PF01126 Heme_oxygenase: Heme oxygenase; InterPro: IPR016053 Haem oxygenase (1.14.99.3 from EC) (HO) [] is the microsomal enzyme that, in animals, carries out the oxidation of haem, it cleaves the haem ring at the alpha-methene bridge to form biliverdin and carbon monoxide []. Biliverdin is subsequently converted to bilirubin by biliverdin reductase. In mammals there are three isozymes of haem oxygenase: HO-1 to HO-3. The first two isozymes differ in their tissue expression and their inducibility: HO-1 is highly inducible by its substrate haem and by various non-haem substances, while HO-2 is non-inducible. It has been suggested [] that HO-2 could be implicated in the production of carbon monoxide in the brain where it is said to act as a neurotransmitter. In the genome of the chloroplast of red algae as well as in cyanobacteria, there is a haem oxygenase (gene pbsA) that is the key enzyme in the synthesis of the chromophoric part of the photosynthetic antennae []. A haem oxygenase is also present in the bacteria Corynebacterium diphtheriae (gene hmuO), where it is involved in the acquisition of iron from the host haem []. There is, in the central section of these enzymes, a well-conserved region centred on a histidine residue.; GO: 0004392 heme oxygenase (decyclizing) activity, 0006788 heme oxidation, 0055114 oxidation-reduction process; PDB: 1J77_A 1P3U_A 1P3V_A 1P3T_A 1WNW_B 1WNX_B 1IW1_B 1WNV_C 1V8X_A 1WZG_B ....
Probab=93.59 E-value=4.6 Score=38.90 Aligned_cols=107 Identities=18% Similarity=0.176 Sum_probs=68.8
Q ss_pred chHHHHHHHHhHHhHHHhhcChHHHHhhcCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHH
Q 008479 14 EGLARRLWIKFKRESVFAMYSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQAYELAEECA-----DDDDAKLSISELR 88 (564)
Q Consensus 14 ~~~~~~lw~~~~~~~~~~~~hpFv~~la~GtL~~~~f~~Yl~QD~~YL~~~~r~~~~~~~~a-----~~~~~~~~l~~~~ 88 (564)
|+|+++|-......-...-+++|++.+..|.++.+.+..||.+=|.+....-..+....+.. ..+ ......
T Consensus 1 ~~l~~~Lr~~T~~~H~~~e~~~~~~~l~~~~~~~~~Y~~~L~~~~~~y~~lE~~l~~~~~~~~~~~~~~~-~l~R~~--- 76 (205)
T PF01126_consen 1 MSLSQRLREATRDLHERLEKSPFMKDLFAGDLSRDDYARFLQAFYHVYRALEAALDRNRDDPALAPLYFP-ELRRSA--- 76 (205)
T ss_dssp -SHHHHHHHHTHHHHHHHHTSHHHHHHHTTSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTTGGGS-G-HHHTHH---
T ss_pred CcHHHHHHHHHHHHHHHHHcchhHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccCc-chhHHH---
Confidence 57888888877665566668999999999999999999999998888877666655442211 111 111111
Q ss_pred HHHHHHHHHHHHHHHHhCCCcccccCCChhHHHHHHHHHHHhc
Q 008479 89 KGVLEELKMHDSFVKEWGTDLAKMATVNSATVKYTEFLLATAS 131 (564)
Q Consensus 89 ~~i~~E~~~h~~~~~~~gi~~~~~~~~~pa~~~Y~~~l~~~a~ 131 (564)
.+..-+.. -.|-+..+..++.|++..|..++...+.
T Consensus 77 -~L~~DL~~------l~~~~~~~~~~~~~a~~~~~~~i~~~~~ 112 (205)
T PF01126_consen 77 -ALEADLAA------LGGPDWRDDIEPSPATQAYVPHIRELAE 112 (205)
T ss_dssp -HHHHHHHH------HHCTTHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHH------hhCCCcccccCCChhHHHHHHHHHHHHc
Confidence 11111111 1121222345678999999999988874
No 176
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=92.98 E-value=0.16 Score=57.87 Aligned_cols=111 Identities=17% Similarity=0.208 Sum_probs=61.3
Q ss_pred CCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEe-eceeecC-----cccccccccc-----C
Q 008479 387 SLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHA-NEFSFKE-----SISTGEIIEK-----V 455 (564)
Q Consensus 387 ~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~a-N~l~~~~-----g~~tG~~~~~-----~ 455 (564)
+.|+...+-+..|+..| ++++.|++-- .---+++..+-|+ ++ +.-.+++ +...-.++++ +
T Consensus 590 PPR~~vP~Av~~CrsAG---IkvimVTgdh-piTAkAiA~~vgI-----i~~~~et~e~~a~r~~~~v~~vn~~~a~a~V 660 (1019)
T KOG0203|consen 590 PPRAAVPDAVGKCRSAG---IKVIMVTGDH-PITAKAIAKSVGI-----ISEGSETVEDIAKRLNIPVEQVNSRDAKAAV 660 (1019)
T ss_pred CCcccCchhhhhhhhhC---ceEEEEecCc-cchhhhhhhheee-----ecCCchhhhhhHHhcCCcccccCccccceEE
Confidence 78888899999999999 9999999753 3333444444331 11 0000100 0000000000 1
Q ss_pred CCCCch----HHHHHHHHHHhC-C------------------CCCccEEEEcCCccchhhhhhcCccEEEc-CCh
Q 008479 456 ESPIDK----VQAFNNTLEKYG-T------------------DRKNLSVYIGDSVGDLLCLLEADIGIVIG-SSS 506 (564)
Q Consensus 456 ~~g~~K----~~~l~~l~~~~~-~------------------~~~~~viyiGDs~~Dl~~l~~Ad~giv~~-~~~ 506 (564)
.+|.++ .+-+.+++..+. + ..+.-|-..|||+||-++|+.|||||++| +.+
T Consensus 661 ihG~eL~~~~~~qld~il~nh~eIVFARTSPqQKLiIVe~cQr~GaiVaVTGDGVNDsPALKKADIGVAMGiaGS 735 (1019)
T KOG0203|consen 661 IHGSELPDMSSEQLDELLQNHQEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGS 735 (1019)
T ss_pred EecccccccCHHHHHHHHHhCCceEEEecCccceEEeEhhhhhcCcEEEEeCCCcCCChhhcccccceeeccccc
Confidence 223222 233444443322 0 01233447899999999999999999997 444
No 177
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=92.70 E-value=0.14 Score=51.13 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=33.8
Q ss_pred CCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhc
Q 008479 457 SPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEA 496 (564)
Q Consensus 457 ~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~A 496 (564)
.+.+|...++.+++..+.. ...++|+||+.||..|+..+
T Consensus 164 ~~~~Kg~a~~~~~~~~~~~-~~~~i~iGD~~~D~~~~~~~ 202 (244)
T TIGR00685 164 RFVNKGEIVKRLLWHQPGS-GISPVYLGDDITDEDAFRVV 202 (244)
T ss_pred CCCCHHHHHHHHHHhcccC-CCceEEEcCCCcHHHHHHHH
Confidence 4678999999999877653 46899999999999999998
No 178
>COG5398 Heme oxygenase [Inorganic ion transport and metabolism]
Probab=92.24 E-value=12 Score=36.29 Aligned_cols=175 Identities=18% Similarity=0.225 Sum_probs=98.3
Q ss_pred hcChHHHHhhcCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcc
Q 008479 32 MYSPFTVCLASGNLKLETFRHYIAQDFHFLKAFSQAYELAEECADDDDAKLSISELRK-GVLEELKMHDSFVKEWGTDLA 110 (564)
Q Consensus 32 ~~hpFv~~la~GtL~~~~f~~Yl~QD~~YL~~~~r~~~~~~~~a~~~~~~~~l~~~~~-~i~~E~~~h~~~~~~~gi~~~ 110 (564)
-+..|+..+-.|-++.+.|+..+.|=+.+..++-++..... +++ .+..+.. .+.+--.+-+.+...+|-+..
T Consensus 19 Env~fmkcfLkg~V~~e~f~kl~~n~yf~ysaleaa~~~~~---d~~----~l~~i~fp~lnr~~tle~dl~~yyg~nwr 91 (238)
T COG5398 19 ENVGFMKCFLKGVVERESFRKLLANLYFVYSALEAATQIHK---DNP----ILSSIYFPELNRKATLEKDLLYYYGNNWR 91 (238)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHhc---cCc----hhhhccchhhhhHHHhhcCHHHHhcccHH
Confidence 34569999999999999999999999988887776544322 221 1111100 111112233344555664555
Q ss_pred cccCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHH------HHHHHHHhh-ccCCCC
Q 008479 111 KMATVNSATVKYTEFLLATASGKVEGVKGPGKLATPFEKTKVAAYTLGAMSPCMRLYA------FLGKEFHAL-LNANEG 183 (564)
Q Consensus 111 ~~~~~~pa~~~Y~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~l~Al~pC~~~Y~------~i~~~~~~~-~~~~~~ 183 (564)
+.+.++|++.+|++++...+.... +.|+ .-|+.-|. .+-++++.. ......
T Consensus 92 e~I~~sp~t~~yv~rv~~iaa~ap--------------------~lLI--ah~ytRyLGdlsggq~l~ki~q~~~~L~~~ 149 (238)
T COG5398 92 ENIQPSPATIAYVDRVRYIAATAP--------------------ELLI--AHNYTRYLGDLSGGQILKKIAQSALELSEG 149 (238)
T ss_pred HhcCcChhHHHHHHHHHHHHhcCc--------------------chhH--HHHHHHHHhcCCCcHHHHHHHHHHhccccc
Confidence 678999999999999999885321 1122 23433331 122333321 111112
Q ss_pred cccccccccccCChhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhh
Q 008479 184 NHPYTKWIDNYSSESFQASALQNEDLLDKLSVSLTGEELDIIEKLYHQAMKLEVEFF 240 (564)
Q Consensus 184 ~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~F~~~~~lE~~Fw 240 (564)
+.-+.++=+. ++=..+-..+++.+|++ ++++++..++.+--.-+..+-.+.+
T Consensus 150 gtaFy~F~dl---~dek~fK~~YR~~ld~l--~ldeAt~~rIvdeAn~aF~~N~~~~ 201 (238)
T COG5398 150 GTAFYEFEDL---GDEKAFKDEYRQNLDSL--ELDEATKLRIVDEANDAFDFNMQMF 201 (238)
T ss_pred cceeeeHhhc---chhhhHHHHHHHHhhcc--cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333332 24455666788888865 4788887777665444444333333
No 179
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=92.11 E-value=0.5 Score=53.84 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=65.3
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCC-c-eeE-------Eeeceeec--Ccc-------
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLN-A-LNV-------HANEFSFK--ESI------- 446 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~-~-~~I-------~aN~l~~~--~g~------- 446 (564)
..+++|..++.++.+...+ +.++.|+|.- .--.-++.++.|+- . ..| --|...+. ||.
T Consensus 673 ~CPlK~Ds~~~I~el~~SS---H~vvMITGDn-pLTAchVak~v~iv~k~~~vl~~~~~~~~~~~~w~s~d~t~~lp~~p 748 (1160)
T KOG0209|consen 673 SCPLKPDSKKTIKELNNSS---HRVVMITGDN-PLTACHVAKEVGIVEKPTLVLDLPEEGDGNQLEWVSVDGTIVLPLKP 748 (1160)
T ss_pred eCCCCccHHHHHHHHhccC---ceEEEEeCCC-ccchheehheeeeeccCceeeccCccCCCceeeEecCCCceeecCCC
Confidence 6899999999999999766 9999999863 33333444433320 0 000 11223321 111
Q ss_pred --------------cccccccc------------------CCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhh
Q 008479 447 --------------STGEIIEK------------------VESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLL 494 (564)
Q Consensus 447 --------------~tG~~~~~------------------~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~ 494 (564)
.||.-... -.....|..++..+++ .+..+.+.|||.||..+|+
T Consensus 749 ~~~~~~l~~~~dlcitG~~l~~l~~~~~l~~l~~hv~VfARvaP~QKE~ii~tlK~-----~Gy~TLMCGDGTNDVGALK 823 (1160)
T KOG0209|consen 749 GKKKTLLAETHDLCITGSALDHLQATDQLRRLIPHVWVFARVAPKQKEFIITTLKK-----LGYVTLMCGDGTNDVGALK 823 (1160)
T ss_pred CccchhhhhhhhhhcchhHHHHHhhhHHHHHhhhheeEEEeeChhhHHHHHHHHHh-----cCeEEEEecCCCcchhhhh
Confidence 11110000 0112234444444443 2467899999999999999
Q ss_pred hcCccEEEcCC
Q 008479 495 EADIGIVIGSS 505 (564)
Q Consensus 495 ~Ad~giv~~~~ 505 (564)
+|++||++-++
T Consensus 824 ~AhVGVALL~~ 834 (1160)
T KOG0209|consen 824 QAHVGVALLNN 834 (1160)
T ss_pred hcccceehhcC
Confidence 99999998644
No 180
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=91.70 E-value=0.8 Score=42.99 Aligned_cols=88 Identities=18% Similarity=0.212 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcCCCCCcEEEEccccC--HHHHHHHHhh-cCCCceeEEeeceeecCccccccccccCCCCCchHHHHHHH
Q 008479 392 CTTFFQKVVKNENLNANVHVLSYCWC--GDLIRASFSS-AGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNT 468 (564)
Q Consensus 392 ~~efl~~l~~~g~~~~~~~IvS~g~s--~~~I~~~l~~-~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~l 468 (564)
+..+++.++++| ..++.|++--- -+-+...|.+ +.+.++ |.+. ++|.- +-..-.+|...+++
T Consensus 119 A~qLI~MHq~RG---D~i~FvTGRt~gk~d~vsk~Lak~F~i~~m----~pv~-----f~Gdk--~k~~qy~Kt~~i~~- 183 (237)
T COG3700 119 ARQLIDMHQRRG---DAIYFVTGRTPGKTDTVSKTLAKNFHITNM----NPVI-----FAGDK--PKPGQYTKTQWIQD- 183 (237)
T ss_pred HHHHHHHHHhcC---CeEEEEecCCCCcccccchhHHhhcccCCC----ccee-----eccCC--CCcccccccHHHHh-
Confidence 356889999999 88999987310 1122222322 111111 2222 33321 11234567766553
Q ss_pred HHHhCCCCCccEEEEcCCccchhhhhhcCc-cEEE
Q 008479 469 LEKYGTDRKNLSVYIGDSVGDLLCLLEADI-GIVI 502 (564)
Q Consensus 469 ~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~-giv~ 502 (564)
...-|.+|||-+|+.+.+.|++ ||-+
T Consensus 184 --------~~~~IhYGDSD~Di~AAkeaG~RgIRi 210 (237)
T COG3700 184 --------KNIRIHYGDSDNDITAAKEAGARGIRI 210 (237)
T ss_pred --------cCceEEecCCchhhhHHHhcCccceeE
Confidence 1346899999999999999997 6544
No 181
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=91.68 E-value=0.13 Score=61.41 Aligned_cols=45 Identities=24% Similarity=0.406 Sum_probs=35.4
Q ss_pred CCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCCh
Q 008479 458 PIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSS 506 (564)
Q Consensus 458 g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~~ 506 (564)
+..|..+.+-.++. .+..+.+||||.||..|+..||+||.|...+
T Consensus 779 PlQKA~Vv~lVk~~----~~~~TLAIGDGANDVsMIQ~AhVGVGIsG~E 823 (1151)
T KOG0206|consen 779 PLQKALVVKLVKKG----LKAVTLAIGDGANDVSMIQEAHVGVGISGQE 823 (1151)
T ss_pred HHHHHHHHHHHHhc----CCceEEEeeCCCccchheeeCCcCeeeccch
Confidence 35777777766432 2467889999999999999999999997654
No 182
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=91.49 E-value=1.5 Score=41.35 Aligned_cols=105 Identities=14% Similarity=0.125 Sum_probs=62.0
Q ss_pred HHhhcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecC-ccc-cccccccCCCC
Q 008479 381 KAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKE-SIS-TGEIIEKVESP 458 (564)
Q Consensus 381 ~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~-g~~-tG~~~~~~~~g 458 (564)
+.++.+.|.|+..+.++.++++| +++.|-|-.+..+..+.+|+..++. ..++ ++. ...|...-+..
T Consensus 39 ~~g~~v~lypdv~~iL~~L~~~g---v~lavASRt~~P~~A~~~L~~l~i~---------~~~~~~~~~~~~F~~~eI~~ 106 (169)
T PF12689_consen 39 SRGEEVSLYPDVPEILQELKERG---VKLAVASRTDEPDWARELLKLLEID---------DADGDGVPLIEYFDYLEIYP 106 (169)
T ss_dssp TT--EE---TTHHHHHHHHHHCT-----EEEEE--S-HHHHHHHHHHTT-C-------------------CCECEEEESS
T ss_pred CCCCEEEeCcCHHHHHHHHHHCC---CEEEEEECCCChHHHHHHHHhcCCC---------ccccccccchhhcchhheec
Confidence 44668999999999999999999 9999999777788999999987764 0000 110 01111111122
Q ss_pred CchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCc
Q 008479 459 IDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI 498 (564)
Q Consensus 459 ~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~ 498 (564)
.+|...++++.+..++ .+..++++=|-..-......-||
T Consensus 107 gsK~~Hf~~i~~~tgI-~y~eMlFFDDe~~N~~~v~~lGV 145 (169)
T PF12689_consen 107 GSKTTHFRRIHRKTGI-PYEEMLFFDDESRNIEVVSKLGV 145 (169)
T ss_dssp S-HHHHHHHHHHHH----GGGEEEEES-HHHHHHHHTTT-
T ss_pred CchHHHHHHHHHhcCC-ChhHEEEecCchhcceeeEecCc
Confidence 3899999999998877 46889999998887777666554
No 183
>PLN02580 trehalose-phosphatase
Probab=91.42 E-value=0.25 Score=52.59 Aligned_cols=47 Identities=26% Similarity=0.304 Sum_probs=37.5
Q ss_pred CCCchHHHHHHHHHHhCCCCCcc--EEEEcCCccchhhhhh-----cCccEEEc
Q 008479 457 SPIDKVQAFNNTLEKYGTDRKNL--SVYIGDSVGDLLCLLE-----ADIGIVIG 503 (564)
Q Consensus 457 ~g~~K~~~l~~l~~~~~~~~~~~--viyiGDs~~Dl~~l~~-----Ad~giv~~ 503 (564)
.+.+|...++.+++..+....+. .+||||+.||..|+.. +++||.++
T Consensus 298 ~g~~KG~Av~~Ll~~~g~~~~d~~~pi~iGDD~TDedmF~~L~~~~~G~~I~Vg 351 (384)
T PLN02580 298 IDWNKGKAVEFLLESLGLSNCDDVLPIYIGDDRTDEDAFKVLREGNRGYGILVS 351 (384)
T ss_pred CCCCHHHHHHHHHHhcCCCcccceeEEEECCCchHHHHHHhhhccCCceEEEEe
Confidence 46799999999998876533222 4899999999999996 47788886
No 184
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=91.14 E-value=2.5 Score=42.77 Aligned_cols=91 Identities=18% Similarity=0.139 Sum_probs=53.3
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEcccc--CHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCW--CGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKV 462 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~--s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 462 (564)
..+.-||+.+|++.++++| +.+++||+=- ....-...|.+.|++.- .+|...+. +.- .+.....-|.
T Consensus 143 ~ApAlp~al~ly~~l~~~G---~kIf~VSgR~e~~r~aT~~NL~kaGy~~~----~~LiLR~~---~D~-~~~~av~yKs 211 (275)
T TIGR01680 143 EAPALPETLKNYNKLVSLG---FKIIFLSGRLKDKQAVTEANLKKAGYHTW----EKLILKDP---QDN-SAENAVEYKT 211 (275)
T ss_pred cCCCChHHHHHHHHHHHCC---CEEEEEeCCchhHHHHHHHHHHHcCCCCc----ceeeecCC---CCC-ccchhHHHHH
Confidence 4566789999999999999 9999999842 13444555666776421 22333211 000 0001112355
Q ss_pred HHHHHHHHHhCCCCCccEE-EEcCCccchh
Q 008479 463 QAFNNTLEKYGTDRKNLSV-YIGDSVGDLL 491 (564)
Q Consensus 463 ~~l~~l~~~~~~~~~~~vi-yiGDs~~Dl~ 491 (564)
...+++.++ +.+++ .|||-.+|+.
T Consensus 212 ~~R~~li~e-----GYrIv~~iGDq~sDl~ 236 (275)
T TIGR01680 212 AARAKLIQE-----GYNIVGIIGDQWNDLK 236 (275)
T ss_pred HHHHHHHHc-----CceEEEEECCCHHhcc
Confidence 555555542 34555 7999999994
No 185
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=90.96 E-value=0.51 Score=37.78 Aligned_cols=42 Identities=26% Similarity=0.384 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCCCCCccEEEEcCC-ccchhhhhhcCc-cEEEcC
Q 008479 462 VQAFNNTLEKYGTDRKNLSVYIGDS-VGDLLCLLEADI-GIVIGS 504 (564)
Q Consensus 462 ~~~l~~l~~~~~~~~~~~viyiGDs-~~Dl~~l~~Ad~-giv~~~ 504 (564)
...+...++..+.+ ..++++|||+ .+|+.+...+++ +|.+..
T Consensus 7 p~~~~~a~~~~~~~-~~~~~~VGD~~~~Di~~a~~~G~~~ilV~t 50 (75)
T PF13242_consen 7 PGMLEQALKRLGVD-PSRCVMVGDSLETDIEAAKAAGIDTILVLT 50 (75)
T ss_dssp HHHHHHHHHHHTSG-GGGEEEEESSTTTHHHHHHHTTSEEEEESS
T ss_pred HHHHHHHHHHcCCC-HHHEEEEcCCcHhHHHHHHHcCCcEEEECC
Confidence 34566666666543 5789999999 999999999999 666653
No 186
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=89.50 E-value=0.3 Score=56.77 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=38.6
Q ss_pred CCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhc---CccEEEcCCh
Q 008479 456 ESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEA---DIGIVIGSSS 506 (564)
Q Consensus 456 ~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~A---d~giv~~~~~ 506 (564)
..+.+|...++.+++.. ..+.++++||+.||..|+..+ +++|.++.++
T Consensus 653 p~~vnKG~al~~ll~~~---~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG~~~ 703 (726)
T PRK14501 653 PAGVNKGRAVRRLLEAG---PYDFVLAIGDDTTDEDMFRALPETAITVKVGPGE 703 (726)
T ss_pred ECCCCHHHHHHHHHhcC---CCCEEEEECCCCChHHHHHhcccCceEEEECCCC
Confidence 34668999999998732 347899999999999999986 5688888654
No 187
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=89.08 E-value=3.8 Score=38.32 Aligned_cols=88 Identities=15% Similarity=0.191 Sum_probs=61.6
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHH
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQA 464 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~ 464 (564)
+-...|...+.+..+++.| +.++|||.+ +..-+..++++.|++.+ +.-++ +. ...
T Consensus 44 ~~~~tpe~~~W~~e~k~~g---i~v~vvSNn-~e~RV~~~~~~l~v~fi--------~~A~K-------P~------~~~ 98 (175)
T COG2179 44 NPDATPELRAWLAELKEAG---IKVVVVSNN-KESRVARAAEKLGVPFI--------YRAKK-------PF------GRA 98 (175)
T ss_pred CCCCCHHHHHHHHHHHhcC---CEEEEEeCC-CHHHHHhhhhhcCCcee--------ecccC-------cc------HHH
Confidence 3466777888888888888 999999987 58888888888775311 11111 11 134
Q ss_pred HHHHHHHhCCCCCccEEEEcCCc-cchhhhhhcCc
Q 008479 465 FNNTLEKYGTDRKNLSVYIGDSV-GDLLCLLEADI 498 (564)
Q Consensus 465 l~~l~~~~~~~~~~~viyiGDs~-~Dl~~l~~Ad~ 498 (564)
+++-+++.+.+ .++++.|||.. ||+..-..+++
T Consensus 99 fr~Al~~m~l~-~~~vvmVGDqL~TDVlggnr~G~ 132 (175)
T COG2179 99 FRRALKEMNLP-PEEVVMVGDQLFTDVLGGNRAGM 132 (175)
T ss_pred HHHHHHHcCCC-hhHEEEEcchhhhhhhcccccCc
Confidence 45555555553 58999999995 89998888887
No 188
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=87.72 E-value=1.1 Score=45.74 Aligned_cols=51 Identities=12% Similarity=0.074 Sum_probs=41.8
Q ss_pred cCCCC-ccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCc--eeEEeec
Q 008479 385 RLSLQ-DGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANE 439 (564)
Q Consensus 385 ~i~lr-~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~ 439 (564)
++++| ||..++++.++++| +++.|+|.|- .+.+...|+..|+.. ..|+||.
T Consensus 143 ~v~irdPgV~EaL~~LkekG---ikLaIaTS~~-Re~v~~~L~~lGLd~YFdvIIs~G 196 (301)
T TIGR01684 143 PVRIRDPRIYDSLTELKKRG---CILVLWSYGD-RDHVVESMRKVKLDRYFDIIISGG 196 (301)
T ss_pred ccccCCHHHHHHHHHHHHCC---CEEEEEECCC-HHHHHHHHHHcCCCcccCEEEECC
Confidence 46788 99999999999999 9999999985 888999999988753 2344444
No 189
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=86.80 E-value=3.2 Score=43.63 Aligned_cols=110 Identities=23% Similarity=0.229 Sum_probs=67.3
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhc-C-------CCc--eeEE--eeceee-cCcc-----
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSA-G-------LNA--LNVH--ANEFSF-KESI----- 446 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~-g-------~~~--~~I~--aN~l~~-~~g~----- 446 (564)
-+...||..++++.++++| .++.|+|.+- .++++.++... | +.. ..|+ |+...| .++.
T Consensus 182 yv~~~pgl~elL~~Lr~~G---~klfLvTNS~-~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v 257 (343)
T TIGR02244 182 YVLRDPKLPLFLSKLKEHG---KKLFLLTNSD-YDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQV 257 (343)
T ss_pred HhccchhHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEE
Confidence 4677999999999999998 9999999985 88999988874 4 211 2233 333333 1111
Q ss_pred --cccccc---------ccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCC-ccchhhhh-hcCc-cEEEc
Q 008479 447 --STGEII---------EKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDS-VGDLLCLL-EADI-GIVIG 503 (564)
Q Consensus 447 --~tG~~~---------~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs-~~Dl~~l~-~Ad~-giv~~ 503 (564)
.+|... +.+.+| +-...+.+++. . .+.+++||||. .+|+.... .++. .+.|.
T Consensus 258 ~~~~g~~~~~~~~~l~~g~vY~g-Gn~~~~~~~l~---~-~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~ 323 (343)
T TIGR02244 258 DVETGSLKWGEVDGLEPGKVYSG-GSLKQFHELLK---W-RGKEVLYFGDHIYGDLLRSKKKRGWRTAAII 323 (343)
T ss_pred eCCCCcccCCccccccCCCeEeC-CCHHHHHHHHC---C-CCCcEEEECCcchHHHHhhHHhcCcEEEEEc
Confidence 122211 111111 22234444443 2 24789999997 48888887 6776 44454
No 190
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=85.75 E-value=1.6 Score=44.64 Aligned_cols=51 Identities=8% Similarity=0.072 Sum_probs=41.8
Q ss_pred cCCCC-ccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCce--eEEeec
Q 008479 385 RLSLQ-DGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNAL--NVHANE 439 (564)
Q Consensus 385 ~i~lr-~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~--~I~aN~ 439 (564)
++++| ||..++++.++++| +++.|+|.|- .+.++..|+..|+... .|+|+.
T Consensus 145 ~v~irdp~V~EtL~eLkekG---ikLaIvTNg~-Re~v~~~Le~lgL~~yFDvII~~g 198 (303)
T PHA03398 145 PVRIRDPFVYDSLDELKERG---CVLVLWSYGN-REHVVHSLKETKLEGYFDIIICGG 198 (303)
T ss_pred ccccCChhHHHHHHHHHHCC---CEEEEEcCCC-hHHHHHHHHHcCCCccccEEEECC
Confidence 46788 99999999999999 9999999884 8889999999887532 355554
No 191
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=84.14 E-value=1.4 Score=43.75 Aligned_cols=38 Identities=26% Similarity=0.326 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCCCccEEEEcCC-ccchhhhhhcCcc
Q 008479 462 VQAFNNTLEKYGTDRKNLSVYIGDS-VGDLLCLLEADIG 499 (564)
Q Consensus 462 ~~~l~~l~~~~~~~~~~~viyiGDs-~~Dl~~l~~Ad~g 499 (564)
...++..++..+.....++++|||+ .+|+.+...+++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~~G~~ 236 (242)
T TIGR01459 198 PAIFHKALKECSNIPKNRMLMVGDSFYTDILGANRLGID 236 (242)
T ss_pred HHHHHHHHHHcCCCCcccEEEECCCcHHHHHHHHHCCCe
Confidence 4566666666543234589999999 6999999999984
No 192
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=83.85 E-value=0.85 Score=53.00 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=35.6
Q ss_pred CCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCC
Q 008479 457 SPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS 505 (564)
Q Consensus 457 ~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~ 505 (564)
...+|.+.+.++.+ .+..+-+.|||.||--+|+.||+||.+...
T Consensus 837 sP~qK~~Lie~lQk-----l~y~VgfCGDGANDCgALKaAdvGISLSea 880 (1140)
T KOG0208|consen 837 SPDQKAELIEALQK-----LGYKVGFCGDGANDCGALKAADVGISLSEA 880 (1140)
T ss_pred CchhHHHHHHHHHh-----cCcEEEecCCCcchhhhhhhcccCcchhhh
Confidence 45678877777665 246788999999999999999999998633
No 193
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=82.91 E-value=1.1 Score=52.72 Aligned_cols=40 Identities=18% Similarity=0.117 Sum_probs=32.0
Q ss_pred CCCchHHHHHHHHHH---hCCCCCccEEEEcCCccchhhhhhcC
Q 008479 457 SPIDKVQAFNNTLEK---YGTDRKNLSVYIGDSVGDLLCLLEAD 497 (564)
Q Consensus 457 ~g~~K~~~l~~l~~~---~~~~~~~~viyiGDs~~Dl~~l~~Ad 497 (564)
.+.+|...++.+++. .+. ..+.++++||+.||..|+..++
T Consensus 759 ~gvnKG~Al~~Ll~~~~~~g~-~~d~vl~~GDD~nDedMF~~~~ 801 (854)
T PLN02205 759 QGVSKGLVAKRLLSIMQERGM-LPDFVLCIGDDRSDEDMFEVIT 801 (854)
T ss_pred CCCCHHHHHHHHHHHHHhcCC-CcccEEEEcCCccHHHHHHHhh
Confidence 467899999998753 232 2468999999999999999875
No 194
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=82.75 E-value=4.7 Score=34.54 Aligned_cols=76 Identities=17% Similarity=0.219 Sum_probs=46.5
Q ss_pred cEEEEccc-c-CHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHHHHHHHHHhCCCCCccEEEEcC
Q 008479 408 NVHVLSYC-W-CGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGD 485 (564)
Q Consensus 408 ~~~IvS~g-~-s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGD 485 (564)
|++=||.+ | --++++..+..+|++.-.++-.++ ++..++-+.. ....-|...+++++.... ..+.|.|||
T Consensus 1 pf~YvS~SPwnly~~l~~Fl~~~~~P~G~~~Lr~~---~~~~~~~~~~--~~~~~K~~~i~~i~~~fP---~~kfiLIGD 72 (100)
T PF09949_consen 1 PFFYVSNSPWNLYPFLRDFLRRNGFPAGPLLLRDY---GPSLSGLFKS--GAEEHKRDNIERILRDFP---ERKFILIGD 72 (100)
T ss_pred CEEEEcCCHHHHHHHHHHHHHhcCCCCCceEcccC---CccccccccC--CchhHHHHHHHHHHHHCC---CCcEEEEee
Confidence 46667774 1 146677778777877666665555 2222222211 111469999999998652 468999999
Q ss_pred Cc-cchh
Q 008479 486 SV-GDLL 491 (564)
Q Consensus 486 s~-~Dl~ 491 (564)
|- .|.+
T Consensus 73 sgq~Dpe 79 (100)
T PF09949_consen 73 SGQHDPE 79 (100)
T ss_pred CCCcCHH
Confidence 74 4543
No 195
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=80.96 E-value=1.4 Score=42.92 Aligned_cols=43 Identities=28% Similarity=0.224 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHhCCCCCcc-EEEEcCCccchhhhhhcCccEEEc
Q 008479 461 KVQAFNNTLEKYGTDRKNL-SVYIGDSVGDLLCLLEADIGIVIG 503 (564)
Q Consensus 461 K~~~l~~l~~~~~~~~~~~-viyiGDs~~Dl~~l~~Ad~giv~~ 503 (564)
|.++.+-+++.+..-.+.+ ++.+|||.||++|+...|..++++
T Consensus 192 Kg~Aa~~ll~~y~rl~~~r~t~~~GDg~nD~Pl~ev~d~AfiV~ 235 (274)
T COG3769 192 KGQAANWLLETYRRLGGARTTLGLGDGPNDAPLLEVMDYAFIVK 235 (274)
T ss_pred ccHHHHHHHHHHHhcCceeEEEecCCCCCcccHHHhhhhheeec
Confidence 5554444443332212345 778999999999999999888875
No 196
>PLN02645 phosphoglycolate phosphatase
Probab=80.05 E-value=8.3 Score=39.92 Aligned_cols=86 Identities=21% Similarity=0.153 Sum_probs=49.1
Q ss_pred CCccHHHHHHHHHHcCCCCCcEEEEcccc--CHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHHH
Q 008479 388 LQDGCTTFFQKVVKNENLNANVHVLSYCW--CGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAF 465 (564)
Q Consensus 388 lr~G~~efl~~l~~~g~~~~~~~IvS~g~--s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l 465 (564)
+-||..++++.++++| .+++++|.+- +..-+..-|++.|++. .. +.+++.. ..+
T Consensus 45 ~~~ga~e~l~~lr~~g---~~~~~~TN~~~~~~~~~~~~l~~lGi~~--------~~-~~I~ts~------------~~~ 100 (311)
T PLN02645 45 LIEGVPETLDMLRSMG---KKLVFVTNNSTKSRAQYGKKFESLGLNV--------TE-EEIFSSS------------FAA 100 (311)
T ss_pred cCcCHHHHHHHHHHCC---CEEEEEeCCCCCCHHHHHHHHHHCCCCC--------Ch-hhEeehH------------HHH
Confidence 4599999999999999 9999999863 1222333345666421 00 1121110 122
Q ss_pred HHHHHHhCCCCCccEEEEcCCccchhhhhhcCc
Q 008479 466 NNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI 498 (564)
Q Consensus 466 ~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~ 498 (564)
..++...+.. ....+|++++.+|...+..+++
T Consensus 101 ~~~l~~~~~~-~~~~V~viG~~~~~~~l~~~Gi 132 (311)
T PLN02645 101 AAYLKSINFP-KDKKVYVIGEEGILEELELAGF 132 (311)
T ss_pred HHHHHhhccC-CCCEEEEEcCHHHHHHHHHCCC
Confidence 2333322211 1235788888888888877765
No 197
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=79.58 E-value=11 Score=41.40 Aligned_cols=124 Identities=11% Similarity=0.003 Sum_probs=77.8
Q ss_pred hhhccCCCHHHHHHHhhcCC---CCcc-HHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeec
Q 008479 368 SGVLKGINLEDIKKAGERLS---LQDG-CTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFK 443 (564)
Q Consensus 368 ~~~f~Gi~~~~i~~~~~~i~---lr~G-~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~ 443 (564)
.--|.|+..++++ .++.+. +-++ -.|-++-.+.-+ ..++||..- ..++++.++.+ +..+.|+..|++..
T Consensus 108 ~v~f~Gl~~~~~~-v~ravLPkf~~~dv~~e~~~v~~~~~----~~~vv~~~P-rvMve~Flkey-l~~d~V~g~El~~~ 180 (525)
T PLN02588 108 MLSFFGVKKESFR-AGKAVLPKYFLEDVGLEMFQVLKRGG----KRVGVSDLP-QVMIDVFLRDY-LEIEVVVGRDMKMV 180 (525)
T ss_pred HHhhcCCcHHHhh-hHHhhccHHHHhhcCHHHHHHHhhcC----cEEEEecCC-HHHHHHHHHHh-cCcceEeeeeEEEe
Confidence 4557899888766 444221 1111 133333333323 567778765 89999999876 45578999999998
Q ss_pred CccccccccccCCCCCchHHHHHH-HHHHhCCCCCccEEEEcCC---ccchhhhhhcCccEEEcC
Q 008479 444 ESISTGEIIEKVESPIDKVQAFNN-TLEKYGTDRKNLSVYIGDS---VGDLLCLLEADIGIVIGS 504 (564)
Q Consensus 444 ~g~~tG~~~~~~~~g~~K~~~l~~-l~~~~~~~~~~~viyiGDs---~~Dl~~l~~Ad~giv~~~ 504 (564)
.|.+||-+. +.+|.....+ +..+. .......+-+||+ .+|...+..+.-++++.+
T Consensus 181 ~g~~tG~~~-----~~~~~~~~~~~~~~~~-~~~~~~~vG~~~~~~~~~~~~f~~~CkE~y~v~~ 239 (525)
T PLN02588 181 GGYYLGIME-----DKKKHELAFDKVVQEE-RLNSGRLIGITSFNSPSHRSLFSQFCQEIYFVRN 239 (525)
T ss_pred eeEEEEEEc-----ccchHHHHHHHHhccc-CcccccceeecccCcccccchhHHhCcceEEeCh
Confidence 888998544 4456655444 33211 1112347889998 788887766665666643
No 198
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=79.17 E-value=8.1 Score=37.30 Aligned_cols=40 Identities=10% Similarity=0.123 Sum_probs=34.4
Q ss_pred CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCC
Q 008479 386 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGL 430 (564)
Q Consensus 386 i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~ 430 (564)
+..|||+.+|++.+.++ .+++|.|++- ..+++.++...++
T Consensus 44 ~~kRP~l~eFL~~~~~~----feIvVwTAa~-~~ya~~~l~~l~~ 83 (195)
T TIGR02245 44 ELMRPYLHEFLTSAYED----YDIVIWSATS-MKWIEIKMTELGV 83 (195)
T ss_pred EEeCCCHHHHHHHHHhC----CEEEEEecCC-HHHHHHHHHHhcc
Confidence 45899999999999985 8999999994 8899999887653
No 199
>PTZ00445 p36-lilke protein; Provisional
Probab=78.03 E-value=14 Score=36.10 Aligned_cols=111 Identities=11% Similarity=0.184 Sum_probs=71.7
Q ss_pred CCCccHHHHHHHHHHcCCCCCcEEEEccccC--------------HHHHHHHHhhcCCC--ceeEEeecee-ecCc-ccc
Q 008479 387 SLQDGCTTFFQKVVKNENLNANVHVLSYCWC--------------GDLIRASFSSAGLN--ALNVHANEFS-FKES-IST 448 (564)
Q Consensus 387 ~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s--------------~~~I~~~l~~~g~~--~~~I~aN~l~-~~~g-~~t 448 (564)
.++|.|..++..+++.| ++++||+-+=- +++|+..|+..+.+ ...|+|=-.. +++. .|.
T Consensus 75 ~~tpefk~~~~~l~~~~---I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~ 151 (219)
T PTZ00445 75 SVTPDFKILGKRLKNSN---IKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYR 151 (219)
T ss_pred cCCHHHHHHHHHHHHCC---CeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhh
Confidence 46788899999999888 99999875310 23788888754432 2234432222 1111 111
Q ss_pred c-cccccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCc-cEEEc
Q 008479 449 G-EIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI-GIVIG 503 (564)
Q Consensus 449 G-~~~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~-giv~~ 503 (564)
. .+.+ +....|.-.|++++++.+.. ++.+++|=|+..-+..+...|+ ++.+.
T Consensus 152 ~~gl~K--Pdp~iK~yHle~ll~~~gl~-peE~LFIDD~~~NVeaA~~lGi~ai~f~ 205 (219)
T PTZ00445 152 PLGLDA--PMPLDKSYHLKQVCSDFNVN-PDEILFIDDDMNNCKNALKEGYIALHVT 205 (219)
T ss_pred hhcccC--CCccchHHHHHHHHHHcCCC-HHHeEeecCCHHHHHHHHHCCCEEEEcC
Confidence 1 0111 12334666779999888874 6899999999999999999998 66654
No 200
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=75.74 E-value=2.4 Score=42.71 Aligned_cols=43 Identities=23% Similarity=0.323 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHhCCCCCccEEEEcCCc-cchhhhhhcCc-cEEEc
Q 008479 460 DKVQAFNNTLEKYGTDRKNLSVYIGDSV-GDLLCLLEADI-GIVIG 503 (564)
Q Consensus 460 ~K~~~l~~l~~~~~~~~~~~viyiGDs~-~Dl~~l~~Ad~-giv~~ 503 (564)
-+...++..++..+. .+.++++|||+. +|+.+...+++ .+.+.
T Consensus 180 P~p~~~~~~~~~~~~-~~~~~~~vGD~~~~Di~~a~~~G~~~i~v~ 224 (257)
T TIGR01458 180 PSKTFFLEALRATGC-EPEEAVMIGDDCRDDVGGAQDCGMRGIQVR 224 (257)
T ss_pred CCHHHHHHHHHHhCC-ChhhEEEECCCcHHHHHHHHHcCCeEEEEC
Confidence 345677777766654 357899999996 99999999998 45553
No 201
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=75.49 E-value=7.1 Score=36.28 Aligned_cols=85 Identities=15% Similarity=0.246 Sum_probs=45.5
Q ss_pred CCccHHHHHHHHHHcCCCCCcEEEEcc--ccCH-----------HHHHHHHhhcCCCceeEEeeceeecCcccccccccc
Q 008479 388 LQDGCTTFFQKVVKNENLNANVHVLSY--CWCG-----------DLIRASFSSAGLNALNVHANEFSFKESISTGEIIEK 454 (564)
Q Consensus 388 lr~G~~efl~~l~~~g~~~~~~~IvS~--g~s~-----------~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~ 454 (564)
+.|+..+.|+.+.+.| ..++|||- |.+. .-|+.+++..+++ +.+++-.-. ..+.++
T Consensus 30 ~~~~v~~~L~~l~~~G---y~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip-~~~~~a~~~-------d~~RKP 98 (159)
T PF08645_consen 30 FPPGVPEALRELHKKG---YKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIP-IQVYAAPHK-------DPCRKP 98 (159)
T ss_dssp C-TTHHHHHHHHHHTT---EEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS--EEEEECGCS-------STTSTT
T ss_pred cchhHHHHHHHHHhcC---CeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCc-eEEEecCCC-------CCCCCC
Confidence 4556788888999988 99999994 3322 3455666666654 333322210 111111
Q ss_pred CCCCCchHHHHHHHHHHhCC---CCCccEEEEcCCccc
Q 008479 455 VESPIDKVQAFNNTLEKYGT---DRKNLSVYIGDSVGD 489 (564)
Q Consensus 455 ~~~g~~K~~~l~~l~~~~~~---~~~~~viyiGDs~~D 489 (564)
+.-.+..+....+. -...+++||||..+|
T Consensus 99 ------~~GM~~~~~~~~~~~~~id~~~Sf~VGDaagr 130 (159)
T PF08645_consen 99 ------NPGMWEFALKDYNDGVEIDLANSFYVGDAAGR 130 (159)
T ss_dssp ------SSHHHHHHCCCTSTT--S-CCC-EEEESSCHC
T ss_pred ------chhHHHHHHHhccccccccccceEEEeccCCC
Confidence 11233444433322 023689999998777
No 202
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=72.72 E-value=2.5 Score=42.11 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=13.4
Q ss_pred CCeEEeeccccceec
Q 008479 262 DRLIIFSDFDLTCTI 276 (564)
Q Consensus 262 ~~~lii~DFD~TiT~ 276 (564)
++.++++||||||+.
T Consensus 2 ~~~~l~lD~DGTL~~ 16 (244)
T TIGR00685 2 RKRAFFFDYDGTLSE 16 (244)
T ss_pred CcEEEEEecCccccC
Confidence 578999999999986
No 203
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=72.17 E-value=2 Score=47.92 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=19.5
Q ss_pred CCeEEeeccccceecccchHHHH
Q 008479 262 DRLIIFSDFDLTCTIVDSSAILA 284 (564)
Q Consensus 262 ~~~lii~DFD~TiT~~DT~~~l~ 284 (564)
.-.+||+|.|||||+.|+++.+.
T Consensus 529 n~kIVISDIDGTITKSDvLGh~l 551 (738)
T KOG2116|consen 529 NDKIVISDIDGTITKSDVLGHVL 551 (738)
T ss_pred CCcEEEecCCCceEhhhhhhhhh
Confidence 56689999999999999877654
No 204
>PLN03017 trehalose-phosphatase
Probab=72.03 E-value=4.5 Score=42.87 Aligned_cols=47 Identities=30% Similarity=0.373 Sum_probs=35.9
Q ss_pred CCCchHHHHHHHHHHhCCCC--CccEEEEcCCccchhhhhhc-----CccEEEc
Q 008479 457 SPIDKVQAFNNTLEKYGTDR--KNLSVYIGDSVGDLLCLLEA-----DIGIVIG 503 (564)
Q Consensus 457 ~g~~K~~~l~~l~~~~~~~~--~~~viyiGDs~~Dl~~l~~A-----d~giv~~ 503 (564)
.+.+|..+++.+++..+... ....+|+||-.||-.++... ++||.++
T Consensus 280 ~~~dKG~Av~~LL~~l~~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~gI~VG 333 (366)
T PLN03017 280 IEWDKGKALEFLLESLGFGNTNNVFPVYIGDDRTDEDAFKMLRDRGEGFGILVS 333 (366)
T ss_pred CCCCHHHHHHHHHHhcccccCCCceEEEeCCCCccHHHHHHHhhcCCceEEEEC
Confidence 36799999999998654321 23589999999999998865 4577776
No 205
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=71.37 E-value=8.1 Score=43.44 Aligned_cols=109 Identities=19% Similarity=0.224 Sum_probs=64.1
Q ss_pred CCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEe-eceeec--Cccccc----cccc-----c
Q 008479 387 SLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHA-NEFSFK--ESISTG----EIIE-----K 454 (564)
Q Consensus 387 ~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~a-N~l~~~--~g~~tG----~~~~-----~ 454 (564)
+.|..-.+.+.+...-| ..+-++++.= -.+-.+.-++.|.. ..++- ..+.-. |+...| ++.. -
T Consensus 492 pprhdsa~tirral~lG---v~Vkmitgdq-laI~keTgrrlgmg-tnmypss~llG~~~~~~~~~~~v~elie~adgfA 566 (942)
T KOG0205|consen 492 PPRHDSAETIRRALNLG---VNVKMITGDQ-LAIAKETGRRLGMG-TNMYPSSALLGLGKDGSMPGSPVDELIEKADGFA 566 (942)
T ss_pred CCccchHHHHHHHHhcc---ceeeeecchH-HHHHHhhhhhhccc-cCcCCchhhccCCCCCCCCCCcHHHHhhhccCcc
Confidence 34667777777777667 8899999753 44444444454432 11221 111111 111001 0000 1
Q ss_pred CCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCC
Q 008479 455 VESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS 505 (564)
Q Consensus 455 ~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~ 505 (564)
......|..+++.+.++. ..+-..|||.||-++++.||+||.+.+.
T Consensus 567 gVfpehKy~iV~~Lq~r~-----hi~gmtgdgvndapaLKkAdigiava~a 612 (942)
T KOG0205|consen 567 GVFPEHKYEIVKILQERK-----HIVGMTGDGVNDAPALKKADIGIAVADA 612 (942)
T ss_pred ccCHHHHHHHHHHHhhcC-----ceecccCCCcccchhhcccccceeeccc
Confidence 223457999988887631 2344799999999999999999999755
No 206
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=68.85 E-value=3.7 Score=43.81 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=21.2
Q ss_pred CCeEEeeccccceecccchHHHHHHH
Q 008479 262 DRLIIFSDFDLTCTIVDSSAILAEIA 287 (564)
Q Consensus 262 ~~~lii~DFD~TiT~~DT~~~l~~~~ 287 (564)
.+.+||+|.|||||+.|...-+.+..
T Consensus 374 n~kiVVsDiDGTITkSD~~Ghv~~mi 399 (580)
T COG5083 374 NKKIVVSDIDGTITKSDALGHVKQMI 399 (580)
T ss_pred CCcEEEEecCCcEEehhhHHHHHHHh
Confidence 56799999999999999886665544
No 207
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=68.32 E-value=27 Score=40.01 Aligned_cols=17 Identities=24% Similarity=0.157 Sum_probs=14.1
Q ss_pred CCeEEeeccccceeccc
Q 008479 262 DRLIIFSDFDLTCTIVD 278 (564)
Q Consensus 262 ~~~lii~DFD~TiT~~D 278 (564)
.+.+|++|+||||+..|
T Consensus 415 ~~KLIfsDLDGTLLd~d 431 (694)
T PRK14502 415 FKKIVYTDLDGTLLNPL 431 (694)
T ss_pred eeeEEEEECcCCCcCCC
Confidence 46699999999999753
No 208
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=68.12 E-value=5.3 Score=36.67 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=32.1
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcC
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAG 429 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g 429 (564)
.+.+|||+.+|++++.+. ..++|.|.+ +..+++.++....
T Consensus 34 ~v~~RP~l~~FL~~l~~~----~ev~i~T~~-~~~ya~~v~~~ld 73 (159)
T PF03031_consen 34 YVKLRPGLDEFLEELSKH----YEVVIWTSA-SEEYAEPVLDALD 73 (159)
T ss_dssp EEEE-TTHHHHHHHHHHH----CEEEEE-SS--HHHHHHHHHHHT
T ss_pred eEeeCchHHHHHHHHHHh----ceEEEEEee-hhhhhhHHHHhhh
Confidence 467899999999999765 799999999 4899999988754
No 209
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=67.48 E-value=12 Score=31.96 Aligned_cols=42 Identities=10% Similarity=0.088 Sum_probs=30.2
Q ss_pred CCCccHHHHHHHHHHcCCCCCcEEEEccc--cCHHHHHHHHhhcCCC
Q 008479 387 SLQDGCTTFFQKVVKNENLNANVHVLSYC--WCGDLIRASFSSAGLN 431 (564)
Q Consensus 387 ~lr~G~~efl~~l~~~g~~~~~~~IvS~g--~s~~~I~~~l~~~g~~ 431 (564)
.+-||+.++++.++++| .++++||.+ .+..-+...|+..|++
T Consensus 14 ~~ipga~e~l~~L~~~g---~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 14 EPIPGAVEALDALRERG---KPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp EE-TTHHHHHHHHHHTT---SEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred CcCcCHHHHHHHHHHcC---CCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 46799999999999999 999999976 3333344445777763
No 210
>PLN02151 trehalose-phosphatase
Probab=66.92 E-value=6.6 Score=41.45 Aligned_cols=47 Identities=28% Similarity=0.375 Sum_probs=35.1
Q ss_pred CCCchHHHHHHHHHHhCCCC--CccEEEEcCCccchhhhhhc-----CccEEEc
Q 008479 457 SPIDKVQAFNNTLEKYGTDR--KNLSVYIGDSVGDLLCLLEA-----DIGIVIG 503 (564)
Q Consensus 457 ~g~~K~~~l~~l~~~~~~~~--~~~viyiGDs~~Dl~~l~~A-----d~giv~~ 503 (564)
.+.+|...++.+++..+... +..++|+||-.||-.|+... |+||.++
T Consensus 266 ~~~dKG~Av~~Ll~~~~~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~gI~Vg 319 (354)
T PLN02151 266 IKWDKGKALEFLLESLGYANCTDVFPIYIGDDRTDEDAFKILRDKKQGLGILVS 319 (354)
T ss_pred CCCCHHHHHHHHHHhcccccCCCCeEEEEcCCCcHHHHHHHHhhcCCCccEEec
Confidence 36799999999998654321 12489999999999998753 5566665
No 211
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=63.39 E-value=8.4 Score=35.70 Aligned_cols=41 Identities=15% Similarity=0.031 Sum_probs=35.8
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCC
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGL 430 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~ 430 (564)
.+.+|||+.+|++.+.++ .+++|+|.+- ..+...+++..+.
T Consensus 56 ~v~~rPgv~efL~~l~~~----yel~I~T~~~-~~yA~~vl~~ldp 96 (156)
T TIGR02250 56 LTKLRPFLHEFLKEASKL----YEMHVYTMGT-RAYAQAIAKLIDP 96 (156)
T ss_pred EEEECCCHHHHHHHHHhh----cEEEEEeCCc-HHHHHHHHHHhCc
Confidence 578999999999999853 7999999995 9999999988664
No 212
>PRK10444 UMP phosphatase; Provisional
Probab=63.39 E-value=12 Score=37.55 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=34.5
Q ss_pred CCCchHHHHHHHHHHhCCCCCccEEEEcCCc-cchhhhhhcCc-cEEEc
Q 008479 457 SPIDKVQAFNNTLEKYGTDRKNLSVYIGDSV-GDLLCLLEADI-GIVIG 503 (564)
Q Consensus 457 ~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~-~Dl~~l~~Ad~-giv~~ 503 (564)
.|--+...++..++..+. ...++++|||+. +|+.+...+++ .+.+.
T Consensus 172 ~gKP~~~~~~~~~~~~~~-~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~ 219 (248)
T PRK10444 172 VGKPSPWIIRAALNKMQA-HSEETVIVGDNLRTDILAGFQAGLETILVL 219 (248)
T ss_pred cCCCCHHHHHHHHHHcCC-CcccEEEECCCcHHHHHHHHHcCCCEEEEC
Confidence 344456777777776654 357899999997 99999999998 44443
No 213
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=61.97 E-value=5.8 Score=40.13 Aligned_cols=15 Identities=27% Similarity=0.169 Sum_probs=13.5
Q ss_pred CCeEEeeccccceec
Q 008479 262 DRLIIFSDFDLTCTI 276 (564)
Q Consensus 262 ~~~lii~DFD~TiT~ 276 (564)
.+.+|++||||||+.
T Consensus 13 ~~~li~~D~DGTLl~ 27 (266)
T PRK10187 13 ANYAWFFDLDGTLAE 27 (266)
T ss_pred CCEEEEEecCCCCCC
Confidence 468999999999997
No 214
>PLN02580 trehalose-phosphatase
Probab=61.51 E-value=4.2 Score=43.38 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=14.0
Q ss_pred CCCeEEeeccccceec
Q 008479 261 GDRLIIFSDFDLTCTI 276 (564)
Q Consensus 261 ~~~~lii~DFD~TiT~ 276 (564)
.+++++++||||||+.
T Consensus 117 ~k~~~LfLDyDGTLaP 132 (384)
T PLN02580 117 GKKIALFLDYDGTLSP 132 (384)
T ss_pred cCCeEEEEecCCccCC
Confidence 3688999999999985
No 215
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=58.81 E-value=5.1 Score=40.58 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=31.1
Q ss_pred CCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcC
Q 008479 457 SPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEAD 497 (564)
Q Consensus 457 ~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad 497 (564)
.+..|...++.+++....+ +..+++.||-.||=.++....
T Consensus 179 ~~~~KG~a~~~i~~~~~~~-~~~~~~aGDD~TDE~~F~~v~ 218 (266)
T COG1877 179 PGVSKGAAIKYIMDELPFD-GRFPIFAGDDLTDEDAFAAVN 218 (266)
T ss_pred CCcchHHHHHHHHhcCCCC-CCcceecCCCCccHHHHHhhc
Confidence 3445999999888765432 246889999999999998876
No 216
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=58.15 E-value=5.2 Score=37.96 Aligned_cols=17 Identities=12% Similarity=0.046 Sum_probs=14.3
Q ss_pred CCCeEEeeccccceecc
Q 008479 261 GDRLIIFSDFDLTCTIV 277 (564)
Q Consensus 261 ~~~~lii~DFD~TiT~~ 277 (564)
+...+|++|+|||||..
T Consensus 19 ~~ikli~~D~Dgtl~~~ 35 (183)
T PRK09484 19 ENIRLLICDVDGVFSDG 35 (183)
T ss_pred hCceEEEEcCCeeeecC
Confidence 35679999999999974
No 217
>PLN02151 trehalose-phosphatase
Probab=57.47 E-value=5.6 Score=41.97 Aligned_cols=16 Identities=31% Similarity=0.665 Sum_probs=14.0
Q ss_pred CCCeEEeeccccceec
Q 008479 261 GDRLIIFSDFDLTCTI 276 (564)
Q Consensus 261 ~~~~lii~DFD~TiT~ 276 (564)
.+++++++||||||+.
T Consensus 96 ~~~~ll~lDyDGTL~P 111 (354)
T PLN02151 96 GKQIVMFLDYDGTLSP 111 (354)
T ss_pred CCceEEEEecCccCCC
Confidence 4689999999999993
No 218
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=57.36 E-value=34 Score=34.28 Aligned_cols=77 Identities=14% Similarity=0.161 Sum_probs=54.1
Q ss_pred CCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCccEEEcCChhHHHHHHhhCCceeecCchhHHhHHhhh
Q 008479 455 VESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLRRVGSQFGVTFIPLYPGLVKKQKEYT 534 (564)
Q Consensus 455 ~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~giv~~~~~~L~~~~~~~gi~~~p~~~~~~~~~~~~~ 534 (564)
..+|..-.+-|.+++.+.+. ..+-.|.++++..-+.+..+.|++.||+|+.|.
T Consensus 48 ~~~G~l~~e~l~~~l~e~~i----------------~llIDATHPyAa~iS~Na~~aake~gipy~r~e----------- 100 (257)
T COG2099 48 RVGGFLGAEGLAAFLREEGI----------------DLLIDATHPYAARISQNAARAAKETGIPYLRLE----------- 100 (257)
T ss_pred eecCcCCHHHHHHHHHHcCC----------------CEEEECCChHHHHHHHHHHHHHHHhCCcEEEEE-----------
Confidence 33444444566777765432 233456667666666789999999999999996
Q ss_pred cCCCCccccccCeEEEeCCHHHHHHhH
Q 008479 535 EGSSSNWKEKSGILYTVSSWAEVHAFI 561 (564)
Q Consensus 535 ~~~~~~~~~~~~~ly~~~~W~~i~~~~ 561 (564)
.+.|...+...+.|++|.|....+
T Consensus 101 ---RP~~~~~gd~~~~V~d~~ea~~~~ 124 (257)
T COG2099 101 ---RPPWAPNGDNWIEVADIEEAAEAA 124 (257)
T ss_pred ---CCccccCCCceEEecCHHHHHHHH
Confidence 456666655899999999987654
No 219
>PLN03017 trehalose-phosphatase
Probab=57.07 E-value=5.8 Score=42.05 Aligned_cols=15 Identities=33% Similarity=0.767 Sum_probs=13.6
Q ss_pred CCCeEEeecccccee
Q 008479 261 GDRLIIFSDFDLTCT 275 (564)
Q Consensus 261 ~~~~lii~DFD~TiT 275 (564)
.++++|++||||||+
T Consensus 109 ~k~~llflD~DGTL~ 123 (366)
T PLN03017 109 GKQIVMFLDYDGTLS 123 (366)
T ss_pred CCCeEEEEecCCcCc
Confidence 367999999999999
No 220
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=55.45 E-value=20 Score=35.81 Aligned_cols=42 Identities=19% Similarity=0.429 Sum_probs=32.6
Q ss_pred chHHHHHHHHHHhCCCCCccEEEEcCCc-cchhhhhhcCc-cEEE
Q 008479 460 DKVQAFNNTLEKYGTDRKNLSVYIGDSV-GDLLCLLEADI-GIVI 502 (564)
Q Consensus 460 ~K~~~l~~l~~~~~~~~~~~viyiGDs~-~Dl~~l~~Ad~-giv~ 502 (564)
-+...++..++..+. .+.++++|||+. +|+.+...+++ .+.+
T Consensus 179 P~~~~~~~~~~~~~~-~~~~~~~VGD~~~~Di~~a~~~G~~~v~v 222 (249)
T TIGR01457 179 PNAIIMEKAVEHLGT-EREETLMVGDNYLTDIRAGIDAGIDTLLV 222 (249)
T ss_pred ChHHHHHHHHHHcCC-CcccEEEECCCchhhHHHHHHcCCcEEEE
Confidence 345777777777665 357899999996 99999999998 4444
No 221
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=55.15 E-value=17 Score=35.89 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=30.3
Q ss_pred CCchHHHHHHHHHHhCCCCCccE-EEEcCCc-cchhhhhhcCcc
Q 008479 458 PIDKVQAFNNTLEKYGTDRKNLS-VYIGDSV-GDLLCLLEADIG 499 (564)
Q Consensus 458 g~~K~~~l~~l~~~~~~~~~~~v-iyiGDs~-~Dl~~l~~Ad~g 499 (564)
+--+...++...+..+... .++ ++|||+. +|+.+...+++.
T Consensus 187 ~KP~~~~~~~~~~~~~~~~-~~~~~~IGD~~~~Di~~A~~~G~~ 229 (236)
T TIGR01460 187 GKPSPAIYRAALNLLQARP-ERRDVMVGDNLRTDILGAKNAGFD 229 (236)
T ss_pred cCCCHHHHHHHHHHhCCCC-ccceEEECCCcHHHHHHHHHCCCc
Confidence 3345677777777665433 455 9999998 899999999974
No 222
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=54.70 E-value=63 Score=30.84 Aligned_cols=96 Identities=13% Similarity=0.129 Sum_probs=60.0
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchH--
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKV-- 462 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~-- 462 (564)
+-++-|.+.+++++-++.| .+++|-|.| |-.-=+-++++ ..+-++ ++.+.|.|+..+ ..|.
T Consensus 101 kahlypDav~~ik~wk~~g---~~vyiYSSG-SV~AQkL~Fgh-------s~agdL---~~lfsGyfDtti---G~KrE~ 163 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALG---MRVYIYSSG-SVKAQKLFFGH-------SDAGDL---NSLFSGYFDTTI---GKKRES 163 (229)
T ss_pred ccccCHhHHHHHHHHHHcC---CcEEEEcCC-CchhHHHhhcc-------cccccH---Hhhhcceeeccc---cccccc
Confidence 4688899999999988888 999999998 32211111111 111111 134556665321 1122
Q ss_pred HHHHHHHHHhCCCCCccEEEEcCCccchhhhhhcCc
Q 008479 463 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI 498 (564)
Q Consensus 463 ~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~ 498 (564)
.--.++....+. .+..++++.|-...|.++..+++
T Consensus 164 ~SY~kIa~~iGl-~p~eilFLSDn~~EL~AA~~vGl 198 (229)
T COG4229 164 QSYAKIAGDIGL-PPAEILFLSDNPEELKAAAGVGL 198 (229)
T ss_pred hhHHHHHHhcCC-CchheEEecCCHHHHHHHHhcch
Confidence 223445555554 35789999999999999999887
No 223
>PLN02423 phosphomannomutase
Probab=54.43 E-value=7.3 Score=38.85 Aligned_cols=18 Identities=28% Similarity=0.134 Sum_probs=14.4
Q ss_pred CCCeEEeeccccceeccc
Q 008479 261 GDRLIIFSDFDLTCTIVD 278 (564)
Q Consensus 261 ~~~~lii~DFD~TiT~~D 278 (564)
+.+.++++|+|||+...+
T Consensus 5 ~~~~i~~~D~DGTLl~~~ 22 (245)
T PLN02423 5 KPGVIALFDVDGTLTAPR 22 (245)
T ss_pred ccceEEEEeccCCCcCCC
Confidence 457788899999999653
No 224
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=53.14 E-value=10 Score=36.11 Aligned_cols=41 Identities=32% Similarity=0.451 Sum_probs=34.7
Q ss_pred EcCCccchhhhhhcCc--cEEEcCChhHHHHHHhhCCceeecC
Q 008479 483 IGDSVGDLLCLLEADI--GIVIGSSSSLRRVGSQFGVTFIPLY 523 (564)
Q Consensus 483 iGDs~~Dl~~l~~Ad~--giv~~~~~~L~~~~~~~gi~~~p~~ 523 (564)
+=||.-|+..|+.|-- |.++.++.-+.+++++.|+.|++-.
T Consensus 158 iLDSapDlDvLLLAkELdaavVssD~Gir~WAe~LGlrfv~a~ 200 (221)
T COG1458 158 ILDSAPDLDVLLLAKELDAAVVSSDEGIRTWAEKLGLRFVDAF 200 (221)
T ss_pred cccccchhHHHHHHHHhCceEEecchhHHHHHHHhCCeeeCHh
Confidence 4499999999998733 6777778889999999999999765
No 225
>PLN02645 phosphoglycolate phosphatase
Probab=52.18 E-value=20 Score=37.09 Aligned_cols=41 Identities=17% Similarity=0.322 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHhCCCCCccEEEEcCCc-cchhhhhhcCc-cEEE
Q 008479 461 KVQAFNNTLEKYGTDRKNLSVYIGDSV-GDLLCLLEADI-GIVI 502 (564)
Q Consensus 461 K~~~l~~l~~~~~~~~~~~viyiGDs~-~Dl~~l~~Ad~-giv~ 502 (564)
+...++..++..+. ...++++|||+. +|+.+...+++ .|.+
T Consensus 232 ~p~~~~~a~~~~~~-~~~~~~~VGD~~~~Di~~A~~aG~~~ilV 274 (311)
T PLN02645 232 STFMMDYLANKFGI-EKSQICMVGDRLDTDILFGQNGGCKTLLV 274 (311)
T ss_pred hHHHHHHHHHHcCC-CcccEEEEcCCcHHHHHHHHHcCCCEEEE
Confidence 34566766666554 357899999997 99999999998 4444
No 226
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=52.02 E-value=7.5 Score=38.63 Aligned_cols=14 Identities=43% Similarity=0.529 Sum_probs=12.7
Q ss_pred CeEEeeccccceec
Q 008479 263 RLIIFSDFDLTCTI 276 (564)
Q Consensus 263 ~~lii~DFD~TiT~ 276 (564)
+++|++|+|||+..
T Consensus 1 ~~li~tDlDGTLl~ 14 (249)
T TIGR01485 1 RLLLVSDLDNTLVD 14 (249)
T ss_pred CeEEEEcCCCcCcC
Confidence 57999999999997
No 227
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=51.69 E-value=45 Score=34.59 Aligned_cols=98 Identities=16% Similarity=0.216 Sum_probs=58.7
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccc-cC-HHHHHHHHhhcCCCceeEEeeceeecCccccccccccCC-CCCch
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYC-WC-GDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVE-SPIDK 461 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g-~s-~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~-~g~~K 461 (564)
+-..-||+..+++.+.+.+. .|++-||.+ |. -+.+...+..++++.-.++=-+ + +|.. +.... .+..|
T Consensus 194 tr~~ipGV~~~yr~l~~~~~--apvfYvSnSPw~~f~~L~efi~~~~~P~GPl~L~~--~-g~~~----~~i~~sga~rK 264 (373)
T COG4850 194 TRQVIPGVSAWYRALTNLGD--APVFYVSNSPWQLFPTLQEFITNRNFPYGPLLLRR--W-GGVL----DNIIESGAARK 264 (373)
T ss_pred ccCCCCCHHHHHHHHHhcCC--CCeEEecCChhHhHHHHHHHHhcCCCCCCchhHhh--c-CCcc----cccccchhhhc
Confidence 45788999999999987652 789999975 20 2344555554444322211110 1 2222 22222 23567
Q ss_pred HHHHHHHHHHhCCCCCccEEEEcCC-ccchhhhh
Q 008479 462 VQAFNNTLEKYGTDRKNLSVYIGDS-VGDLLCLL 494 (564)
Q Consensus 462 ~~~l~~l~~~~~~~~~~~viyiGDs-~~Dl~~l~ 494 (564)
.+.|+.++.++. +.+.|.|||| .-|++.-.
T Consensus 265 ~~~l~nil~~~p---~~kfvLVGDsGE~DpeIYa 295 (373)
T COG4850 265 GQSLRNILRRYP---DRKFVLVGDSGEHDPEIYA 295 (373)
T ss_pred ccHHHHHHHhCC---CceEEEecCCCCcCHHHHH
Confidence 788887887663 3688999986 56776443
No 228
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=51.51 E-value=33 Score=41.39 Aligned_cols=76 Identities=18% Similarity=0.259 Sum_probs=49.5
Q ss_pred HHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHHHHHHHHHhCCCCCccE-EEEcCCcc-chhhhhh
Q 008479 418 GDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLS-VYIGDSVG-DLLCLLE 495 (564)
Q Consensus 418 ~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~l~~~~~~~~~~~v-iyiGDs~~-Dl~~l~~ 495 (564)
-.-|+..|+..++.-.-|+|.. |.+..-++-...|.+.|+-+..+++.+. .++ |++|||-| |++.|+.
T Consensus 923 v~elr~~Lr~~gLr~~~iys~~---------~~~LDVlP~~ASKgqAlRyL~~rwgi~l-~~v~VfaGdSGntD~e~Ll~ 992 (1050)
T TIGR02468 923 VKELRKLLRIQGLRCHAVYCRN---------GTRLNVIPLLASRSQALRYLFVRWGIEL-ANMAVFVGESGDTDYEGLLG 992 (1050)
T ss_pred HHHHHHHHHhCCCceEEEeecC---------CcEeeeeeCCCCHHHHHHHHHHHcCCCh-HHeEEEeccCCCCCHHHHhC
Confidence 3567777887776422233322 1222223455679999999999988865 555 67999999 9987754
Q ss_pred cC-ccEEEc
Q 008479 496 AD-IGIVIG 503 (564)
Q Consensus 496 Ad-~giv~~ 503 (564)
-- .+|++.
T Consensus 993 G~~~tvi~~ 1001 (1050)
T TIGR02468 993 GLHKTVILK 1001 (1050)
T ss_pred CceeEEEEe
Confidence 32 277774
No 229
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=51.15 E-value=88 Score=29.45 Aligned_cols=98 Identities=15% Similarity=0.086 Sum_probs=54.3
Q ss_pred CCCccHHHHHHHHHHcCCCCCcEEEEcccc------CHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCc
Q 008479 387 SLQDGCTTFFQKVVKNENLNANVHVLSYCW------CGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPID 460 (564)
Q Consensus 387 ~lr~G~~efl~~l~~~g~~~~~~~IvS~g~------s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~ 460 (564)
.+.|...+.++.|++.+ ....++|||-+- ...-++.+-+..|++ ++.-. ..+ ..|
T Consensus 59 ~i~~~~~~~~~~l~~~~-~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIp---vl~h~------------~kK---P~~ 119 (168)
T PF09419_consen 59 EIPPEYAEWLNELKKQF-GKDRVLIVSNSAGSSDDPDGERAEALEKALGIP---VLRHR------------AKK---PGC 119 (168)
T ss_pred cCCHHHHHHHHHHHHHC-CCCeEEEEECCCCcccCccHHHHHHHHHhhCCc---EEEeC------------CCC---Ccc
Confidence 45556667788888775 111499999863 133344444454532 21110 011 123
Q ss_pred hHHHHHHHHHHhCCCCCccEEEEcCC-ccchhhhhhcCc-cEEEc
Q 008479 461 KVQAFNNTLEKYGTDRKNLSVYIGDS-VGDLLCLLEADI-GIVIG 503 (564)
Q Consensus 461 K~~~l~~l~~~~~~~~~~~viyiGDs-~~Dl~~l~~Ad~-giv~~ 503 (564)
..++++-+........+++++.|||= .||+.+....+. +|++.
T Consensus 120 ~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~ 164 (168)
T PF09419_consen 120 FREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVT 164 (168)
T ss_pred HHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccCceEEEEe
Confidence 44444433322112235789999997 489988888884 66664
No 230
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=51.00 E-value=7.7 Score=38.75 Aligned_cols=13 Identities=31% Similarity=0.253 Sum_probs=12.3
Q ss_pred CeEEeecccccee
Q 008479 263 RLIIFSDFDLTCT 275 (564)
Q Consensus 263 ~~lii~DFD~TiT 275 (564)
+.+|++|||+|++
T Consensus 2 ~~ll~sDlD~Tl~ 14 (247)
T PF05116_consen 2 PRLLASDLDGTLI 14 (247)
T ss_dssp SEEEEEETBTTTB
T ss_pred CEEEEEECCCCCc
Confidence 6899999999999
No 231
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=50.62 E-value=27 Score=40.74 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=14.5
Q ss_pred CCCeEEeeccccceecc
Q 008479 261 GDRLIIFSDFDLTCTIV 277 (564)
Q Consensus 261 ~~~~lii~DFD~TiT~~ 277 (564)
.++.+|++||||||+..
T Consensus 490 ~~~rLi~~D~DGTL~~~ 506 (726)
T PRK14501 490 ASRRLLLLDYDGTLVPF 506 (726)
T ss_pred ccceEEEEecCccccCC
Confidence 35789999999999964
No 232
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=49.49 E-value=64 Score=27.28 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCCccc---ccCCChhHHHHHHHHHHHhc-CCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHH----H
Q 008479 96 KMHDSFVKEWGTDLAK---MATVNSATVKYTEFLLATAS-GKVEGVKGPGKLATPFEKTKVAAYTLGAMSPCMRL----Y 167 (564)
Q Consensus 96 ~~h~~~~~~~gi~~~~---~~~~~pa~~~Y~~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~a~~l~Al~pC~~~----Y 167 (564)
.+++++++.+|++.+. .....|.+.++.+.++..+. ... +..++++++.-+.. |
T Consensus 20 ~Lf~~~L~~~Gi~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~------------------~~~~lG~~~~~E~~~~~~~ 81 (106)
T PF14518_consen 20 ELFRRFLRALGIDDEPGAYRDPYPPETLALINLFLALCLHRSH------------------YPEALGALLATESSVPQIY 81 (106)
T ss_dssp HHHHHHHHHTT-----TT-----HHHHHHHHHHHHHH--H-SS------------------THHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHcCCCCccccccccCCHHHHHHHHHHHHhcccchh------------------HHHHHHHHHHHhhcChHHH
Confidence 5788889999999862 22356789999999988874 332 24566666665544 4
Q ss_pred HHHHHHHHh
Q 008479 168 AFLGKEFHA 176 (564)
Q Consensus 168 ~~i~~~~~~ 176 (564)
..+.+.+.+
T Consensus 82 ~~~~~~l~r 90 (106)
T PF14518_consen 82 RRLIKGLRR 90 (106)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554444
No 233
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=48.83 E-value=2.3e+02 Score=30.36 Aligned_cols=136 Identities=10% Similarity=0.127 Sum_probs=72.0
Q ss_pred CCHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCCcEEEEcc-ccCHHHHHHHHhhcCCCceeEEeeceeecCccccccc-
Q 008479 374 INLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSY-CWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEI- 451 (564)
Q Consensus 374 i~~~~i~~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~-g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~- 451 (564)
++.+++..+.+++.+..=-.+-.+.+++ ..+.||=. |. +-.+-..|...|+..+.|+=++..-..+.. -.+
T Consensus 15 l~~~~~~ry~Rq~~l~~~g~~~q~~L~~-----~~VlviG~GGl-Gs~va~~La~~Gvg~i~lvD~D~ve~sNL~-Rq~l 87 (392)
T PRK07878 15 LTRDEVARYSRHLIIPDVGVDGQKRLKN-----ARVLVIGAGGL-GSPTLLYLAAAGVGTLGIVEFDVVDESNLQ-RQVI 87 (392)
T ss_pred CCHHHHHHhhheechhhcCHHHHHHHhc-----CCEEEECCCHH-HHHHHHHHHHcCCCeEEEECCCEecCcccc-cccc
Confidence 4555555555544332111344455554 45666655 44 444555555668766655544433222211 111
Q ss_pred cccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCc---cchhhhhhcCccEEEcC--C----hhHHHHHHhhCCcee
Q 008479 452 IEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSV---GDLLCLLEADIGIVIGS--S----SSLRRVGSQFGVTFI 520 (564)
Q Consensus 452 ~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~---~Dl~~l~~Ad~giv~~~--~----~~L~~~~~~~gi~~~ 520 (564)
......|..|.....+.+...+. .-++..+-... ++...+..+| +|+.. + -.+-++|.+.+++++
T Consensus 88 ~~~~diG~~Ka~~a~~~l~~~np--~v~i~~~~~~i~~~~~~~~~~~~D--~Vvd~~d~~~~r~~ln~~~~~~~~p~v 161 (392)
T PRK07878 88 HGQSDVGRSKAQSARDSIVEINP--LVNVRLHEFRLDPSNAVELFSQYD--LILDGTDNFATRYLVNDAAVLAGKPYV 161 (392)
T ss_pred cChhcCCChHHHHHHHHHHHhCC--CcEEEEEeccCChhHHHHHHhcCC--EEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 12223466799888877766542 23454444333 3345566788 55532 2 146788999999877
No 234
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=48.09 E-value=23 Score=35.87 Aligned_cols=40 Identities=15% Similarity=0.293 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCCCccEEEEcCC-ccchhhhhhcCc-cEEE
Q 008479 462 VQAFNNTLEKYGTDRKNLSVYIGDS-VGDLLCLLEADI-GIVI 502 (564)
Q Consensus 462 ~~~l~~l~~~~~~~~~~~viyiGDs-~~Dl~~l~~Ad~-giv~ 502 (564)
...+...++..+. .+.++++|||+ .+|+.+...+++ .|.+
T Consensus 205 p~~~~~~~~~~~~-~~~~~lmIGD~~~tDI~~A~~aGi~si~V 246 (279)
T TIGR01452 205 PYMFECITENFSI-DPARTLMVGDRLETDILFGHRCGMTTVLV 246 (279)
T ss_pred HHHHHHHHHHhCC-ChhhEEEECCChHHHHHHHHHcCCcEEEE
Confidence 3466666666554 35789999999 599999999998 3444
No 235
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=47.71 E-value=1.5e+02 Score=26.25 Aligned_cols=112 Identities=15% Similarity=0.256 Sum_probs=60.2
Q ss_pred CcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCC
Q 008479 407 ANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDS 486 (564)
Q Consensus 407 ~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs 486 (564)
..+.|+-.|--+-.+-..|...|+..+.|+=++..-..+...-.+......|..|...+++.+.+.+. ..++..+...
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np--~~~v~~~~~~ 80 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINP--DVEVEAIPEK 80 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHST--TSEEEEEESH
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcC--ceeeeeeecc
Confidence 35667765421444444455557765655444433222221111222223478899999998887653 3566676666
Q ss_pred ccc--h-hhhhhcCccEEEc--CC----hhHHHHHHhhCCceeec
Q 008479 487 VGD--L-LCLLEADIGIVIG--SS----SSLRRVGSQFGVTFIPL 522 (564)
Q Consensus 487 ~~D--l-~~l~~Ad~giv~~--~~----~~L~~~~~~~gi~~~p~ 522 (564)
.++ + ..+..+| +++. ++ ..|.++|++++++++--
T Consensus 81 ~~~~~~~~~~~~~d--~vi~~~d~~~~~~~l~~~~~~~~~p~i~~ 123 (135)
T PF00899_consen 81 IDEENIEELLKDYD--IVIDCVDSLAARLLLNEICREYGIPFIDA 123 (135)
T ss_dssp CSHHHHHHHHHTSS--EEEEESSSHHHHHHHHHHHHHTT-EEEEE
T ss_pred cccccccccccCCC--EEEEecCCHHHHHHHHHHHHHcCCCEEEE
Confidence 632 2 2223567 5553 22 25888999999977643
No 236
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=46.97 E-value=2.3e+02 Score=30.11 Aligned_cols=111 Identities=14% Similarity=0.121 Sum_probs=58.2
Q ss_pred CcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHHHHHHHHHhCCCCCccEEEEc--
Q 008479 407 ANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIG-- 484 (564)
Q Consensus 407 ~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiG-- 484 (564)
.++.|+-.|--.-.|-..|...|+..+.++=.+..-..+...-.+....-.|..|...+.+.+.+.+. .-++..+=
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np--~v~v~~~~~~ 213 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNP--DVQVEAVQER 213 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCC--CCEEEEEecc
Confidence 46777765432555666667778766655544432111111000111122467899888777765542 12333221
Q ss_pred -CCccchhhhhhcCccEEEcC--Ch----hHHHHHHhhCCceee
Q 008479 485 -DSVGDLLCLLEADIGIVIGS--SS----SLRRVGSQFGVTFIP 521 (564)
Q Consensus 485 -Ds~~Dl~~l~~Ad~giv~~~--~~----~L~~~~~~~gi~~~p 521 (564)
++.+....+..+| +|+.. +. .+-++|.+++++++-
T Consensus 214 ~~~~~~~~~~~~~D--~Vv~~~d~~~~r~~ln~~~~~~~ip~i~ 255 (376)
T PRK08762 214 VTSDNVEALLQDVD--VVVDGADNFPTRYLLNDACVKLGKPLVY 255 (376)
T ss_pred CChHHHHHHHhCCC--EEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 2222233456678 55532 21 467889999998873
No 237
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=46.62 E-value=15 Score=36.26 Aligned_cols=48 Identities=27% Similarity=0.398 Sum_probs=30.5
Q ss_pred CCCchHHHHHHHHHHhCCC--CCccEEEEcCCccchhhhhhc------CccEEEcC
Q 008479 457 SPIDKVQAFNNTLEKYGTD--RKNLSVYIGDSVGDLLCLLEA------DIGIVIGS 504 (564)
Q Consensus 457 ~g~~K~~~l~~l~~~~~~~--~~~~viyiGDs~~Dl~~l~~A------d~giv~~~ 504 (564)
.+..|..+++.+++..+.. .+..++|+||..||-.|+... +++|.++.
T Consensus 162 ~~~~KG~av~~ll~~~~~~~~~~~~~l~~GDD~tDE~~f~~~~~~~~~~~~i~V~~ 217 (235)
T PF02358_consen 162 PGVNKGSAVRRLLEELPFAGPKPDFVLYIGDDRTDEDAFRALRELEEGGFGIKVGS 217 (235)
T ss_dssp TT--HHHHHHHHHTTS---------EEEEESSHHHHHHHHTTTTS----EEEEES-
T ss_pred CCCChHHHHHHHHHhcCccccccceeEEecCCCCCHHHHHHHHhcccCCCCeEEEe
Confidence 3445999999999865421 124799999999999999884 34555553
No 238
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=46.28 E-value=3.1e+02 Score=27.24 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=70.2
Q ss_pred CCHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCCcEEEEccc-cCHHHHHHHHhhcCCCceeEEeeceeecCcccccccc
Q 008479 374 INLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYC-WCGDLIRASFSSAGLNALNVHANEFSFKESISTGEII 452 (564)
Q Consensus 374 i~~~~i~~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g-~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~ 452 (564)
++.+++.++.+++.++.=-.+--+.+++ ..+.||-.| . +-.+-..|...|+..+.|+=.+..-..+...-.+.
T Consensus 5 l~~~~~~rY~Rqi~l~~~g~~~Q~~L~~-----~~VliiG~Ggl-Gs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~ 78 (245)
T PRK05690 5 LSDEEMLRYNRQIILRGFDFDGQEKLKA-----ARVLVVGLGGL-GCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLH 78 (245)
T ss_pred CCHHHHHHHHHhccchhcCHHHHHHhcC-----CeEEEECCCHH-HHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcC
Confidence 4555566665555443211222334433 457777654 4 44444455556776565554443322221000011
Q ss_pred ccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCccc---hhhhhhcCccEEEc--CC----hhHHHHHHhhCCceee
Q 008479 453 EKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGD---LLCLLEADIGIVIG--SS----SSLRRVGSQFGVTFIP 521 (564)
Q Consensus 453 ~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~D---l~~l~~Ad~giv~~--~~----~~L~~~~~~~gi~~~p 521 (564)
....-|..|...+.+.+...+. .-++..+-...+. ...+...| +++. ++ ..+.++|.+++++++-
T Consensus 79 ~~~dvG~~Ka~~a~~~l~~lnp--~v~i~~~~~~i~~~~~~~~~~~~D--iVi~~~D~~~~r~~ln~~~~~~~ip~v~ 152 (245)
T PRK05690 79 DDATIGQPKVESARAALARINP--HIAIETINARLDDDELAALIAGHD--LVLDCTDNVATRNQLNRACFAAKKPLVS 152 (245)
T ss_pred ChhhCCChHHHHHHHHHHHHCC--CCEEEEEeccCCHHHHHHHHhcCC--EEEecCCCHHHHHHHHHHHHHhCCEEEE
Confidence 1123366799888887766543 2345454433332 23355677 5553 22 2477889999998874
No 239
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=46.24 E-value=9.1 Score=36.36 Aligned_cols=14 Identities=29% Similarity=-0.107 Sum_probs=12.4
Q ss_pred EEeeccccceeccc
Q 008479 265 IIFSDFDLTCTIVD 278 (564)
Q Consensus 265 lii~DFD~TiT~~D 278 (564)
+|+||.|||||+..
T Consensus 3 ~i~fDktGTLt~~~ 16 (215)
T PF00702_consen 3 AICFDKTGTLTQGK 16 (215)
T ss_dssp EEEEECCTTTBESH
T ss_pred EEEEecCCCcccCe
Confidence 68999999999864
No 240
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=45.77 E-value=19 Score=42.44 Aligned_cols=41 Identities=15% Similarity=-0.028 Sum_probs=28.6
Q ss_pred CCCCchHHHHHHHHHHhC-----CCCCccEEEEcCCcc-chhhhhhc
Q 008479 456 ESPIDKVQAFNNTLEKYG-----TDRKNLSVYIGDSVG-DLLCLLEA 496 (564)
Q Consensus 456 ~~g~~K~~~l~~l~~~~~-----~~~~~~viyiGDs~~-Dl~~l~~A 496 (564)
..|.+|..++++++.... ....+-+.++||..+ |=.|+..-
T Consensus 674 p~gvnKG~Av~~ll~~~~~~~~~~~~~dfvl~~Gdd~~~DEdmF~~l 720 (797)
T PLN03063 674 AIGVTKGAAIGRILGEIVHNKSMTTPIDFVFCSGYFLEKDEDVYTFF 720 (797)
T ss_pred cCCCChHHHHHHHHHHhhhccccCCCCCEEEEeCCCCCCcHHHHHhc
Confidence 357799999999987531 012356889999864 87777653
No 241
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=45.54 E-value=1.3e+02 Score=34.72 Aligned_cols=119 Identities=16% Similarity=0.094 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCCCCcEEEEcc---ccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCC-C-CchHHHHHH
Q 008479 393 TTFFQKVVKNENLNANVHVLSY---CWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVES-P-IDKVQAFNN 467 (564)
Q Consensus 393 ~efl~~l~~~g~~~~~~~IvS~---g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~-g-~~K~~~l~~ 467 (564)
.+.++...+.| -++++||+ || ++.-.++...+.+ +.++--.+.. ..+.+..+++. . ..+...++.
T Consensus 468 ~~~l~~a~~~~---kgvi~~t~H~gnw--E~~~~~~~~~~~~-~~~i~r~~~~----~R~~~g~~~i~~~~~~~~~~~r~ 537 (656)
T PRK15174 468 EQFFQRLQLDQ---RGCIIVSAHLGAM--YAGPMILSLLEMN-SKWVASTPGV----LKGGYGERLISVSDKSEADVVRA 537 (656)
T ss_pred HHHHHHHHhcC---CCEEEEecCcchh--hHHHHHHHHcCCC-ceeeecchHH----HHHhcCCceeccCCCCcchHHHH
Confidence 44455555556 68999986 67 6666667665543 2222222221 11122122221 1 112222333
Q ss_pred HHHHhCCCCCccEEEEcCCccchhhhhhcCc-cEEEcCChhHHHHHHhhCCceeecCc
Q 008479 468 TLEKYGTDRKNLSVYIGDSVGDLLCLLEADI-GIVIGSSSSLRRVGSQFGVTFIPLYP 524 (564)
Q Consensus 468 l~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~-giv~~~~~~L~~~~~~~gi~~~p~~~ 524 (564)
+.+... .+.-+.+.+|-...-. -..++. |.-..-.....+++.+.|.+++|+..
T Consensus 538 i~~aLk--~g~~v~il~Dq~~~~~-~~~v~FfG~~a~~~~g~~~lA~~~~~pvv~~~~ 592 (656)
T PRK15174 538 CMQTLH--SGQSLVVAIDGALNLS-APTIDFFGQQITYSTFCSRLAWKMHLPTVFSVP 592 (656)
T ss_pred HHHHHH--cCCeEEEEeCCCCCCC-CceeccCCCccCcCcHHHHHHHHHCCCEEEeEE
Confidence 333221 1356778988873211 111221 11111123567888999999998763
No 242
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=45.01 E-value=8.5 Score=37.85 Aligned_cols=14 Identities=36% Similarity=0.351 Sum_probs=11.7
Q ss_pred EEeeccccceeccc
Q 008479 265 IIFSDFDLTCTIVD 278 (564)
Q Consensus 265 lii~DFD~TiT~~D 278 (564)
+|++|+|||+...|
T Consensus 1 li~~DlDgTLl~~~ 14 (236)
T TIGR02471 1 LIITDLDNTLLGDD 14 (236)
T ss_pred CeEEeccccccCCH
Confidence 58999999999743
No 243
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=44.53 E-value=54 Score=29.29 Aligned_cols=50 Identities=4% Similarity=-0.131 Sum_probs=36.2
Q ss_pred CCCccHHHHHHHHHHcCCCCCcEEEEccccCH--------------HHHHHHHhhcCCCceeEEeec
Q 008479 387 SLQDGCTTFFQKVVKNENLNANVHVLSYCWCG--------------DLIRASFSSAGLNALNVHANE 439 (564)
Q Consensus 387 ~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~--------------~~I~~~l~~~g~~~~~I~aN~ 439 (564)
.+.+++.+.++.++++| +.++++|+--.. ..+..+|.+++++-.+|+-..
T Consensus 24 ~~~~~~ie~L~~l~~~G---~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~k 87 (126)
T TIGR01689 24 APILAVIEKLRHYKALG---FEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVGK 87 (126)
T ss_pred ccCHHHHHHHHHHHHCC---CEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeCC
Confidence 45666777888888888 999999984211 277889999887766555444
No 244
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=44.26 E-value=11 Score=33.58 Aligned_cols=13 Identities=31% Similarity=0.365 Sum_probs=11.3
Q ss_pred EEeeccccceecc
Q 008479 265 IIFSDFDLTCTIV 277 (564)
Q Consensus 265 lii~DFD~TiT~~ 277 (564)
+|++|.||||+..
T Consensus 3 ~i~~DiDGTL~~~ 15 (126)
T TIGR01689 3 RLVMDLDNTITLT 15 (126)
T ss_pred EEEEeCCCCcccC
Confidence 7899999999853
No 245
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=41.38 E-value=55 Score=38.92 Aligned_cols=17 Identities=24% Similarity=0.135 Sum_probs=14.3
Q ss_pred CCeEEeeccccceeccc
Q 008479 262 DRLIIFSDFDLTCTIVD 278 (564)
Q Consensus 262 ~~~lii~DFD~TiT~~D 278 (564)
++.+|++||||||....
T Consensus 595 ~~rlI~LDyDGTLlp~~ 611 (854)
T PLN02205 595 TTRAILLDYDGTLMPQA 611 (854)
T ss_pred cCeEEEEecCCcccCCc
Confidence 57899999999999543
No 246
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=40.71 E-value=20 Score=33.40 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=17.3
Q ss_pred cCCCCCCCCeEEeeccccceecc
Q 008479 255 KGHNPAGDRLIIFSDFDLTCTIV 277 (564)
Q Consensus 255 ~~~~~~~~~~lii~DFD~TiT~~ 277 (564)
....|+....++++|-||||+..
T Consensus 5 ~~~~~~~~~k~~~~D~Dgtl~~~ 27 (166)
T TIGR01664 5 TADGPKPQSKVAAFDLDGTLITT 27 (166)
T ss_pred cCCCCCCcCcEEEEeCCCceEec
Confidence 34557655678889999999964
No 247
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=40.51 E-value=20 Score=42.73 Aligned_cols=40 Identities=18% Similarity=0.109 Sum_probs=27.9
Q ss_pred CCCCchHHHHHHHHHHhCC-----CCCccEEEEcCCcc-chhhhhh
Q 008479 456 ESPIDKVQAFNNTLEKYGT-----DRKNLSVYIGDSVG-DLLCLLE 495 (564)
Q Consensus 456 ~~g~~K~~~l~~l~~~~~~-----~~~~~viyiGDs~~-Dl~~l~~ 495 (564)
..|.+|..++++++..... ..++-++++||-.+ |=.|+..
T Consensus 764 P~gvnKG~Av~~ll~~~~~~~~~~~~~DFvlc~GDd~~~DEdmF~~ 809 (934)
T PLN03064 764 PVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDIYTF 809 (934)
T ss_pred cCCCCHHHHHHHHHHhhhhccccCCCCCEEEEeCCCCCCcHHHHHH
Confidence 4577999999999875321 12466889999654 8666655
No 248
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=40.04 E-value=14 Score=32.78 Aligned_cols=14 Identities=29% Similarity=0.219 Sum_probs=12.2
Q ss_pred EEeeccccceeccc
Q 008479 265 IIFSDFDLTCTIVD 278 (564)
Q Consensus 265 lii~DFD~TiT~~D 278 (564)
++++|+||||+..+
T Consensus 2 li~~DlD~Tl~~~~ 15 (128)
T TIGR01681 2 VIVFDLDNTLWTGE 15 (128)
T ss_pred EEEEeCCCCCCCCC
Confidence 78999999999764
No 249
>COG4996 Predicted phosphatase [General function prediction only]
Probab=39.88 E-value=57 Score=29.42 Aligned_cols=44 Identities=11% Similarity=0.122 Sum_probs=30.0
Q ss_pred hhcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCC
Q 008479 383 GERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGL 430 (564)
Q Consensus 383 ~~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~ 430 (564)
+..+.|+|.+++++++.+..| .-+...|=|+ .+-.-.+|+..++
T Consensus 37 G~ev~L~~~v~~~l~warnsG---~i~~~~sWN~-~~kA~~aLral~~ 80 (164)
T COG4996 37 GREVHLFPDVKETLKWARNSG---YILGLASWNF-EDKAIKALRALDL 80 (164)
T ss_pred CeEEEEcHHHHHHHHHHHhCC---cEEEEeecCc-hHHHHHHHHHhch
Confidence 457899999999999999988 5444444444 3333445666554
No 250
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=37.51 E-value=71 Score=34.34 Aligned_cols=85 Identities=18% Similarity=0.207 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCCCCCcEEEEcccc-CHHHHHHHHhhc---CCCc-eeEEeeceeecCccccccccccCCCCCchHHHHHH
Q 008479 393 TTFFQKVVKNENLNANVHVLSYCW-CGDLIRASFSSA---GLNA-LNVHANEFSFKESISTGEIIEKVESPIDKVQAFNN 467 (564)
Q Consensus 393 ~efl~~l~~~g~~~~~~~IvS~g~-s~~~I~~~l~~~---g~~~-~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~ 467 (564)
.++++..+. | .++.|.|+|- +..+|+..|+.. +.+. +.--||.+.-++ .||| ++..+=.+.+.+
T Consensus 2 ~~~~~~~~~-g---~~~Gi~SVCsahp~VieAAl~~a~~~~~pvLiEAT~NQVdq~G-GYTG------mtP~dF~~~V~~ 70 (421)
T PRK15052 2 KTLIARHKA-G---EHIGICSVCSAHPLVIEAALAFDLNSTRKVLIEATSNQVNQFG-GYTG------MTPADFREFVYG 70 (421)
T ss_pred hhHHHhhhc-C---CCCceeeECCCCHHHHHHHHHHHhhcCCcEEEEeccccccccC-CcCC------CCHHHHHHHHHH
Confidence 345555444 4 5777888753 578899877543 2221 233477766654 4577 233344466777
Q ss_pred HHHHhCCCCCccEEEEcCCccc
Q 008479 468 TLEKYGTDRKNLSVYIGDSVGD 489 (564)
Q Consensus 468 l~~~~~~~~~~~viyiGDs~~D 489 (564)
+..+.+.+ .+++|.-||..|=
T Consensus 71 iA~~~gf~-~~~iiLggDHlGP 91 (421)
T PRK15052 71 IADKVGFP-RERIILGGDHLGP 91 (421)
T ss_pred HHHHcCCC-hhcEEeecCCCCC
Confidence 77777663 3588999998765
No 251
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=37.32 E-value=63 Score=31.05 Aligned_cols=50 Identities=16% Similarity=0.030 Sum_probs=35.3
Q ss_pred CCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeecee
Q 008479 388 LQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFS 441 (564)
Q Consensus 388 lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~ 441 (564)
+.|...+.+++++++| ++++|.|+-. ...++.+++..+++.--|.+|--.
T Consensus 19 i~~~~~~~i~~l~~~g---~~~~~~TGR~-~~~~~~~~~~l~~~~~~i~~NGa~ 68 (215)
T TIGR01487 19 ISERAIEAIRKAEKKG---IPVSLVTGNT-VPFARALAVLIGTSGPVVAENGGV 68 (215)
T ss_pred cCHHHHHHHHHHHHCC---CEEEEEcCCc-chhHHHHHHHhCCCCcEEEccCcE
Confidence 4445566788888888 9999999985 666788887777643345566543
No 252
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=36.97 E-value=18 Score=39.46 Aligned_cols=52 Identities=12% Similarity=0.173 Sum_probs=32.8
Q ss_pred cCCCHHHHHHHhhc-CCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhh
Q 008479 372 KGINLEDIKKAGER-LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSS 427 (564)
Q Consensus 372 ~Gi~~~~i~~~~~~-i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~ 427 (564)
.|.=+.++.+-.++ +.-.|....+++.++++| -.+.+++.+- -+|+..++..
T Consensus 167 ~G~lk~~v~~dp~kYi~k~~~l~~~L~~lr~~G---KklFLiTNS~-~~yt~~~M~y 219 (448)
T PF05761_consen 167 DGSLKREVKEDPEKYIHKDPKLPPWLERLRSAG---KKLFLITNSP-FDYTNAVMSY 219 (448)
T ss_dssp CSCHHHHHHTTCCCCEE--CHHHHHHHHHHCCT----EEEEE-SS--HHHHHHHHHH
T ss_pred chHHHHHHHHCHHHHccCCchHHHHHHHHHhcC---ceEEEecCCC-Cchhhhhhhh
Confidence 34333444443332 444778999999999988 7899999874 6888888754
No 253
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=36.49 E-value=20 Score=33.70 Aligned_cols=16 Identities=19% Similarity=0.046 Sum_probs=13.8
Q ss_pred CCeEEeeccccceecc
Q 008479 262 DRLIIFSDFDLTCTIV 277 (564)
Q Consensus 262 ~~~lii~DFD~TiT~~ 277 (564)
.-.++|||+||++|+.
T Consensus 6 ~i~~~v~d~dGv~tdg 21 (169)
T TIGR02726 6 NIKLVILDVDGVMTDG 21 (169)
T ss_pred cCeEEEEeCceeeECC
Confidence 4569999999999975
No 254
>PF08745 UPF0278: UPF0278 family; InterPro: IPR022785 This entry contains proteins of the UPF0278 family and proteins containing PIN domains. Members of the UPF0278 family are uncharacterised and about 200 amino acids in length.; PDB: 2LCQ_A.
Probab=36.17 E-value=18 Score=34.91 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=24.1
Q ss_pred EcCCccchhhhhhcCc--cEEEcCChhHHHHHHhhCCceeecC
Q 008479 483 IGDSVGDLLCLLEADI--GIVIGSSSSLRRVGSQFGVTFIPLY 523 (564)
Q Consensus 483 iGDs~~Dl~~l~~Ad~--giv~~~~~~L~~~~~~~gi~~~p~~ 523 (564)
+=||..|+..+..|-- |+++.++..+..+|++.|+++++-.
T Consensus 151 ~ldS~~D~dvl~LA~El~a~lvt~D~gi~~~A~~lGi~~i~~~ 193 (205)
T PF08745_consen 151 ILDSREDIDVLLLALELDAVLVTDDYGIQNWAEKLGIRFIDAR 193 (205)
T ss_dssp ----HHHHHHHHHHHHHT--EE---HHHHHHHHHTT--EE---
T ss_pred cCCChHhHHHHHHHHHcCCEEEeCCHhHHHHHHHCCCEEEecc
Confidence 4489999999988722 7888888899999999999999654
No 255
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=35.73 E-value=19 Score=33.46 Aligned_cols=13 Identities=38% Similarity=0.327 Sum_probs=9.9
Q ss_pred EEeeccccceecc
Q 008479 265 IIFSDFDLTCTIV 277 (564)
Q Consensus 265 lii~DFD~TiT~~ 277 (564)
++.||+||||+..
T Consensus 2 ia~fD~DgTLi~~ 14 (159)
T PF08645_consen 2 IAFFDLDGTLIKT 14 (159)
T ss_dssp EEEE-SCTTTEE-
T ss_pred EEEEeCCCCccCC
Confidence 6899999999875
No 256
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=35.58 E-value=19 Score=32.59 Aligned_cols=13 Identities=23% Similarity=0.066 Sum_probs=11.6
Q ss_pred EEeeccccceecc
Q 008479 265 IIFSDFDLTCTIV 277 (564)
Q Consensus 265 lii~DFD~TiT~~ 277 (564)
.+++|+||||+..
T Consensus 2 ~~~~d~dgtl~~~ 14 (147)
T TIGR01656 2 ALFLDRDGVINED 14 (147)
T ss_pred eEEEeCCCceecc
Confidence 6899999999975
No 257
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=35.58 E-value=19 Score=31.64 Aligned_cols=12 Identities=33% Similarity=0.094 Sum_probs=10.9
Q ss_pred EEeeccccceec
Q 008479 265 IIFSDFDLTCTI 276 (564)
Q Consensus 265 lii~DFD~TiT~ 276 (564)
++++|+||||+.
T Consensus 2 ~~~~D~dgtL~~ 13 (132)
T TIGR01662 2 GVVLDLDGTLTD 13 (132)
T ss_pred EEEEeCCCceec
Confidence 689999999994
No 258
>PTZ00174 phosphomannomutase; Provisional
Probab=35.41 E-value=20 Score=35.65 Aligned_cols=16 Identities=31% Similarity=0.247 Sum_probs=13.7
Q ss_pred CeEEeeccccceeccc
Q 008479 263 RLIIFSDFDLTCTIVD 278 (564)
Q Consensus 263 ~~lii~DFD~TiT~~D 278 (564)
..+|++|.||||...|
T Consensus 5 ~klia~DlDGTLL~~~ 20 (247)
T PTZ00174 5 KTILLFDVDGTLTKPR 20 (247)
T ss_pred CeEEEEECcCCCcCCC
Confidence 5699999999999765
No 259
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=35.13 E-value=3.6e+02 Score=26.27 Aligned_cols=132 Identities=14% Similarity=0.169 Sum_probs=65.4
Q ss_pred ccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHH--HHhhcCCCceeEEeeceeecCccccccccc-----cCCCCCchH
Q 008479 390 DGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRA--SFSSAGLNALNVHANEFSFKESISTGEIIE-----KVESPIDKV 462 (564)
Q Consensus 390 ~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~--~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~-----~~~~g~~K~ 462 (564)
.+..+.|.++++.+ .+.-+..+++|. .++=.. +|+-+.-....|+---+-|.+..-.|.-.+ .+..|..=.
T Consensus 3 eql~~TFa~aK~en-knaLvtfiTaG~-P~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~ 80 (268)
T KOG4175|consen 3 EQLSETFARAKSEN-KNALVTFITAGD-PDVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLN 80 (268)
T ss_pred hHHHHHHHHHHhcC-CceEEEEEecCC-CcHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHH
Confidence 35567777777765 335566778886 332221 222111112455555555555444443221 011222112
Q ss_pred HHHHHHHHHhCCCCCccEEE---------EcCCccchhhhhhcCc-cEEEcCC-----hhHHHHHHhhCCceeecCc
Q 008479 463 QAFNNTLEKYGTDRKNLSVY---------IGDSVGDLLCLLEADI-GIVIGSS-----SSLRRVGSQFGVTFIPLYP 524 (564)
Q Consensus 463 ~~l~~l~~~~~~~~~~~viy---------iGDs~~Dl~~l~~Ad~-giv~~~~-----~~L~~~~~~~gi~~~p~~~ 524 (564)
.+++-+..-........+|. +||- +=+.-+..|+. |+++-+- ..++..|+++|++++|+..
T Consensus 81 ~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e-~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLva 156 (268)
T KOG4175|consen 81 SIIEMVKEARPQGVTCPIILMGYYNPILRYGVE-NYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVA 156 (268)
T ss_pred HHHHHHHHhcccCcccceeeeecccHHHhhhHH-HHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeC
Confidence 22222222111101123343 4442 33455666776 8777533 2799999999999999963
No 260
>PLN02382 probable sucrose-phosphatase
Probab=34.67 E-value=25 Score=38.09 Aligned_cols=16 Identities=44% Similarity=0.461 Sum_probs=14.5
Q ss_pred CCeEEeeccccceecc
Q 008479 262 DRLIIFSDFDLTCTIV 277 (564)
Q Consensus 262 ~~~lii~DFD~TiT~~ 277 (564)
.+++|++|+|||+...
T Consensus 8 ~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 8 PRLMIVSDLDHTMVDH 23 (413)
T ss_pred CCEEEEEcCCCcCcCC
Confidence 5899999999999975
No 261
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=34.41 E-value=84 Score=31.05 Aligned_cols=49 Identities=12% Similarity=0.074 Sum_probs=35.4
Q ss_pred CCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeece
Q 008479 388 LQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEF 440 (564)
Q Consensus 388 lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l 440 (564)
+.+...+.+++++++| +.++|.|+.- ...+...+++.++..--|.+|-.
T Consensus 17 i~~~~~~~i~~l~~~G---~~~~iaTGR~-~~~~~~~~~~~~~~~~~I~~NGa 65 (256)
T TIGR00099 17 ISPSTKEALAKLREKG---IKVVLATGRP-YKEVKNILKELGLDTPFITANGA 65 (256)
T ss_pred cCHHHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHcCCCCCEEEcCCc
Confidence 3445567788889988 9999999984 67788888887764333455544
No 262
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=33.82 E-value=88 Score=31.43 Aligned_cols=47 Identities=9% Similarity=-0.027 Sum_probs=35.1
Q ss_pred ccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeece
Q 008479 390 DGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEF 440 (564)
Q Consensus 390 ~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l 440 (564)
++..+.++.++++| ++++|+|+-. ...+...+++.++..-.|..|--
T Consensus 24 ~~~~~ai~~l~~~G---i~~~iaTgR~-~~~~~~~~~~l~l~~~~i~~nGa 70 (273)
T PRK00192 24 EPAKPALKALKEKG---IPVIPCTSKT-AAEVEVLRKELGLEDPFIVENGA 70 (273)
T ss_pred HHHHHHHHHHHHCC---CEEEEEcCCC-HHHHHHHHHHcCCCCCEEEEcCc
Confidence 44567888889888 9999999885 67788888888864334555554
No 263
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=33.38 E-value=3.4e+02 Score=24.01 Aligned_cols=99 Identities=12% Similarity=0.106 Sum_probs=52.3
Q ss_pred HHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHHHHHHHHHhCCCCCccEEEEcC---CccchhhhhhcC
Q 008479 421 IRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGD---SVGDLLCLLEAD 497 (564)
Q Consensus 421 I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGD---s~~Dl~~l~~Ad 497 (564)
+-.-|...|+..+.++=++..-..+...-.+......|..|.+.+.+.+...+. .-++-.+-. +.++...+...|
T Consensus 14 ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p--~v~i~~~~~~~~~~~~~~~~~~~d 91 (143)
T cd01483 14 IALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNP--GVNVTAVPEGISEDNLDDFLDGVD 91 (143)
T ss_pred HHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCC--CcEEEEEeeecChhhHHHHhcCCC
Confidence 333344456655555544433222211111111223467899998888876652 223333322 233345566777
Q ss_pred ccEEEcCC------hhHHHHHHhhCCceeecC
Q 008479 498 IGIVIGSS------SSLRRVGSQFGVTFIPLY 523 (564)
Q Consensus 498 ~giv~~~~------~~L~~~~~~~gi~~~p~~ 523 (564)
+++... ..+.++|++++++++--.
T Consensus 92 --iVi~~~d~~~~~~~l~~~~~~~~i~~i~~~ 121 (143)
T cd01483 92 --LVIDAIDNIAVRRALNRACKELGIPVIDAG 121 (143)
T ss_pred --EEEECCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 555322 247889999999887553
No 264
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=33.20 E-value=98 Score=29.75 Aligned_cols=45 Identities=9% Similarity=0.048 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCce-eEEeece
Q 008479 392 CTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNAL-NVHANEF 440 (564)
Q Consensus 392 ~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~-~I~aN~l 440 (564)
..+.++.++++| ++++|+|+.- ...++.+++..+++.. -|-+|--
T Consensus 21 ~~~~l~~l~~~g---i~~~i~TgR~-~~~~~~~~~~l~~~~~~~I~~NGa 66 (221)
T TIGR02463 21 AAPWLTRLQEAG---IPVILCTSKT-AAEVEYLQKALGLTGDPYIAENGA 66 (221)
T ss_pred HHHHHHHHHHCC---CeEEEEcCCC-HHHHHHHHHHcCCCCCcEEEeCCc
Confidence 356788888888 9999999985 8889999988876422 3445544
No 265
>TIGR03875 RNA_lig_partner RNA ligase partner, MJ_0950 family. This uncharacterized protein family is found almost perfectly in the same set of genomes as the Pab1020 family described by model TIGR01209. These pairs are found mostly in Archaea, but also in a few bacteria (e.g. Alkalilimnicola ehrlichei MLHE-1, Aquifex aeolicus). While the partner protein has been described as homodimeric ligase that has RNA circularization activity, the function of this protein (also called UPF0278) is unknown.
Probab=33.05 E-value=35 Score=32.93 Aligned_cols=39 Identities=31% Similarity=0.463 Sum_probs=33.5
Q ss_pred EcCCccchhhhhhcCc--cEEEcCChhHHHHHHhhCCceee
Q 008479 483 IGDSVGDLLCLLEADI--GIVIGSSSSLRRVGSQFGVTFIP 521 (564)
Q Consensus 483 iGDs~~Dl~~l~~Ad~--giv~~~~~~L~~~~~~~gi~~~p 521 (564)
+=||.+|+..+..|=- |+++-++..+..+|++.|+++.+
T Consensus 154 iLdS~~DidvlaLA~ELda~lvTdD~giqn~A~~Lgi~~~~ 194 (206)
T TIGR03875 154 ILDSAEDLDVLLLAKELDAAVVSADEGIRKWAERLGLRFVD 194 (206)
T ss_pred ccCchhhHHHHHHHHHcCcEEEeCcHHHHHHHHHcCCeeec
Confidence 4499999999888722 78888889999999999999987
No 266
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=32.54 E-value=1.1e+02 Score=28.27 Aligned_cols=39 Identities=13% Similarity=0.025 Sum_probs=32.7
Q ss_pred CccHHHHHHHHHHcCCCCC-cEEEEccccCHHHHHHHHhhcCCC
Q 008479 389 QDGCTTFFQKVVKNENLNA-NVHVLSYCWCGDLIRASFSSAGLN 431 (564)
Q Consensus 389 r~G~~efl~~l~~~g~~~~-~~~IvS~g~s~~~I~~~l~~~g~~ 431 (564)
-||+.++.+.++++| + .+++||+|= .....+|.+..|..
T Consensus 58 lPgY~~~~d~f~~kG---VD~I~cVSVND-~FVm~AWak~~g~~ 97 (165)
T COG0678 58 LPGYLELADEFKAKG---VDEIYCVSVND-AFVMNAWAKSQGGE 97 (165)
T ss_pred CccHHHHHHHHHHcC---CceEEEEEeCc-HHHHHHHHHhcCCC
Confidence 489999999999998 5 589999994 78888888887764
No 267
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=32.15 E-value=79 Score=31.44 Aligned_cols=39 Identities=10% Similarity=0.149 Sum_probs=31.3
Q ss_pred ccHHHHHHHHHHcCCCCCcEEEEcc--ccCHHHHHHHHhhcCCC
Q 008479 390 DGCTTFFQKVVKNENLNANVHVLSY--CWCGDLIRASFSSAGLN 431 (564)
Q Consensus 390 ~G~~efl~~l~~~g~~~~~~~IvS~--g~s~~~I~~~l~~~g~~ 431 (564)
||..++++.++++| ++++++|. +.+..-+...|++.|++
T Consensus 20 ~~a~~~l~~l~~~g---~~~~~~Tnn~~r~~~~~~~~l~~~g~~ 60 (249)
T TIGR01457 20 PEAETFVHELQKRD---IPYLFVTNNSTRTPESVAEMLASFDIP 60 (249)
T ss_pred cCHHHHHHHHHHCC---CeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 57789999999998 99999996 45567777778877764
No 268
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=32.02 E-value=1.1e+02 Score=32.92 Aligned_cols=84 Identities=14% Similarity=0.121 Sum_probs=51.9
Q ss_pred HHHHHHHHcCCCCCcEEEEcccc-CHHHHHHHHhhc---CCCc-eeEEeeceeecCccccccccccCCCCCchHHHHHHH
Q 008479 394 TFFQKVVKNENLNANVHVLSYCW-CGDLIRASFSSA---GLNA-LNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNT 468 (564)
Q Consensus 394 efl~~l~~~g~~~~~~~IvS~g~-s~~~I~~~l~~~---g~~~-~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~l 468 (564)
++++..+. | .++.|.|+|- +..+|+..|+.. +.+. +.--||.+.-++ .||| ++..+=.+.+.++
T Consensus 6 ~~~~~~k~-g---~~~gI~sVCsahp~VieAAl~~a~~~~~pvLiEAT~NQVnq~G-GYTG------mtP~dF~~~V~~i 74 (426)
T PRK15458 6 EMVQQHKA-G---KTNGIYAVCSAHPLVLEAAIRYALANDSPLLIEATSNQVDQFG-GYTG------MTPADFRGFVCQL 74 (426)
T ss_pred HHHHhhcc-C---CCceEEEecCCCHHHHHHHHHHHhhcCCcEEEEeccccccccC-CcCC------CCHHHHHHHHHHH
Confidence 44444443 4 5777888753 578899877543 2221 234477766654 4577 2333445667777
Q ss_pred HHHhCCCCCccEEEEcCCccc
Q 008479 469 LEKYGTDRKNLSVYIGDSVGD 489 (564)
Q Consensus 469 ~~~~~~~~~~~viyiGDs~~D 489 (564)
..+.+.+ .+++|.-||..|=
T Consensus 75 A~~~gf~-~~~iiLGGDHLGP 94 (426)
T PRK15458 75 ADSLNFP-QEALILGGDHLGP 94 (426)
T ss_pred HHHcCCC-hhhEEeecCCCCC
Confidence 7777764 3589999998875
No 269
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=30.93 E-value=28 Score=34.13 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=36.5
Q ss_pred CCCchHHHHHHHHHHhCCCCCccEEEEcC----CccchhhhhhcCc-cEEEcCChhHHHHHH
Q 008479 457 SPIDKVQAFNNTLEKYGTDRKNLSVYIGD----SVGDLLCLLEADI-GIVIGSSSSLRRVGS 513 (564)
Q Consensus 457 ~g~~K~~~l~~l~~~~~~~~~~~viyiGD----s~~Dl~~l~~Ad~-giv~~~~~~L~~~~~ 513 (564)
.|.||.-.|+.+... ..+.++|+|| |-||.+....+++ |+-+.......+.|+
T Consensus 159 ~GwDKty~Lr~l~~~----~~~~I~FfGDkt~pGGNDyei~~~~rt~g~~V~~p~DT~~~l~ 216 (220)
T PF03332_consen 159 KGWDKTYCLRHLEDE----GFDEIHFFGDKTFPGGNDYEIFEDPRTIGHTVTSPEDTIKQLK 216 (220)
T ss_dssp TT-SGGGGGGGTTTT----T-SEEEEEESS-STTSTTHHHHHSTTSEEEE-SSHHHHHHHHH
T ss_pred CCccHHHHHHHHHhc----ccceEEEEehhccCCCCCceeeecCCccEEEeCCHHHHHHHHH
Confidence 577888777776542 1468999999 6799999998876 888875544454544
No 270
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=30.60 E-value=1.1e+02 Score=32.84 Aligned_cols=75 Identities=19% Similarity=0.245 Sum_probs=47.6
Q ss_pred CcEEEEcccc-CHHHHHHHHhhc---CCCc-eeEEeeceeecCccccccccccCCCCCchHHHHHHHHHHhCCCCCccEE
Q 008479 407 ANVHVLSYCW-CGDLIRASFSSA---GLNA-LNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSV 481 (564)
Q Consensus 407 ~~~~IvS~g~-s~~~I~~~l~~~---g~~~-~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~l~~~~~~~~~~~vi 481 (564)
.++.|.|+|- +..+|+..|+.. +.+. +.--||.+.-++ .||| ++..+=.+.+.++..+.+.+ .+++|
T Consensus 11 ~~~gI~sVCsahp~VieAAl~~a~~~~~pvLiEAT~NQVnq~G-GYTG------mtP~dF~~~V~~iA~~~gf~-~~~ii 82 (420)
T TIGR02810 11 EPRGIYSVCSAHPLVLEAAIRRARASGTPVLIEATSNQVNQFG-GYTG------MTPADFRDFVETIADRIGFP-RDRLI 82 (420)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhhcCCcEEEEeccccccccC-CcCC------CCHHHHHHHHHHHHHHcCCC-hhcEE
Confidence 5778888753 578899877543 2221 233477766654 4577 23334446677777777663 35899
Q ss_pred EEcCCccc
Q 008479 482 YIGDSVGD 489 (564)
Q Consensus 482 yiGDs~~D 489 (564)
.-||..|=
T Consensus 83 LggDHlGP 90 (420)
T TIGR02810 83 LGGDHLGP 90 (420)
T ss_pred eecCCCCC
Confidence 99998774
No 271
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=30.37 E-value=6.2e+02 Score=26.92 Aligned_cols=138 Identities=14% Similarity=0.151 Sum_probs=72.6
Q ss_pred CCCHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCccccccc-
Q 008479 373 GINLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEI- 451 (564)
Q Consensus 373 Gi~~~~i~~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~- 451 (564)
-++..++.++.+++.+..=-.+--+.+++ ..+.||-.|=.+-.+-..|...|+..+.++=.+..-..+. .-.+
T Consensus 13 ~~~~~e~~ry~Rqi~l~~~g~~~q~~l~~-----~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL-~RQ~l 86 (370)
T PRK05600 13 QLPTSELRRTARQLALPGFGIEQQERLHN-----ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNI-HRQIL 86 (370)
T ss_pred CCCHHHHHHhhcccchhhhCHHHHHHhcC-----CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccc-ccccc
Confidence 34566666666666553212444455543 4566666542244555556666776555444333221111 1111
Q ss_pred cccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCcc---chhhhhhcCccEEEc--CC----hhHHHHHHhhCCcee
Q 008479 452 IEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVG---DLLCLLEADIGIVIG--SS----SSLRRVGSQFGVTFI 520 (564)
Q Consensus 452 ~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~---Dl~~l~~Ad~giv~~--~~----~~L~~~~~~~gi~~~ 520 (564)
......|..|...+.+.+...+. .-++..+-...+ ....+..+| +|+. ++ -.+-++|.+++++++
T Consensus 87 ~~~~diG~~Ka~~~~~~l~~~np--~v~i~~~~~~i~~~~~~~~~~~~D--lVid~~Dn~~~r~~in~~~~~~~iP~v 160 (370)
T PRK05600 87 FGASDVGRPKVEVAAERLKEIQP--DIRVNALRERLTAENAVELLNGVD--LVLDGSDSFATKFLVADAAEITGTPLV 160 (370)
T ss_pred CChhHCCCHHHHHHHHHHHHHCC--CCeeEEeeeecCHHHHHHHHhCCC--EEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 11223467799888887766543 234444443333 234566688 5553 22 145688999999887
No 272
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=30.21 E-value=75 Score=34.22 Aligned_cols=85 Identities=19% Similarity=0.247 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcccc-CHHHHHHHHhhcCCCc--e--eEEeeceeecCccccccccccCCCCCchHHHHH
Q 008479 392 CTTFFQKVVKNENLNANVHVLSYCW-CGDLIRASFSSAGLNA--L--NVHANEFSFKESISTGEIIEKVESPIDKVQAFN 466 (564)
Q Consensus 392 ~~efl~~l~~~g~~~~~~~IvS~g~-s~~~I~~~l~~~g~~~--~--~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~ 466 (564)
..++++.. +.| .++.|.|+|- +..+|+..|+...-.+ + .--||.+.-+ |.||| +. ..+=...+.
T Consensus 4 l~~lv~~~-k~G---~~~gI~SVCsahp~VieAAl~~a~~~~~pvLiEAT~NQVnq~-GGYTG-mt-----P~dF~~~V~ 72 (424)
T PF08013_consen 4 LKELVKRH-KAG---EPVGIYSVCSAHPLVIEAALERAKEDDSPVLIEATSNQVNQF-GGYTG-MT-----PADFRDFVR 72 (424)
T ss_dssp -HHHHHHH-HTT-----B-EEEE----HHHHHHHHHHCCCS-S-EEEEEETTTCSTT--TTTT-B------HHHHHHHHH
T ss_pred HHHHHHHH-hCC---CCCceEEecCCCHHHHHHHHHHHHhcCCeEEEEecccccccc-CCcCC-CC-----HHHHHHHHH
Confidence 45666644 445 6788888753 4778998887542111 2 3346765544 55777 22 223446677
Q ss_pred HHHHHhCCCCCccEEEEcCCcc
Q 008479 467 NTLEKYGTDRKNLSVYIGDSVG 488 (564)
Q Consensus 467 ~l~~~~~~~~~~~viyiGDs~~ 488 (564)
++.++.+.+ .+++|.-||..+
T Consensus 73 ~iA~~~g~~-~~~iiLGGDHLG 93 (424)
T PF08013_consen 73 EIADEVGFP-RDRIILGGDHLG 93 (424)
T ss_dssp HHHHHCT---GGGEEEEEEEES
T ss_pred HHHHHcCCc-hhhEEecCCCCC
Confidence 777777663 367999999866
No 273
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=29.98 E-value=26 Score=32.07 Aligned_cols=14 Identities=21% Similarity=0.033 Sum_probs=12.0
Q ss_pred eEEeeccccceecc
Q 008479 264 LIIFSDFDLTCTIV 277 (564)
Q Consensus 264 ~lii~DFD~TiT~~ 277 (564)
.+|++|.||||++.
T Consensus 2 ~~~~~D~Dgtl~~~ 15 (154)
T TIGR01670 2 RLLILDVDGVLTDG 15 (154)
T ss_pred eEEEEeCceeEEcC
Confidence 37899999999964
No 274
>PRK04358 hypothetical protein; Provisional
Probab=29.85 E-value=39 Score=32.94 Aligned_cols=40 Identities=30% Similarity=0.442 Sum_probs=34.4
Q ss_pred EcCCccchhhhhhcCc--cEEEcCChhHHHHHHhhCCceeec
Q 008479 483 IGDSVGDLLCLLEADI--GIVIGSSSSLRRVGSQFGVTFIPL 522 (564)
Q Consensus 483 iGDs~~Dl~~l~~Ad~--giv~~~~~~L~~~~~~~gi~~~p~ 522 (564)
+=||.+|+..+..|=- |+++-++..+..+|++.|+++.+-
T Consensus 158 ~ldS~~DidvlaLA~ELda~lvTdD~giqn~A~~LGI~~~~~ 199 (217)
T PRK04358 158 ILDSAEDLDVLLLAKELDAAVVSADEGIRKWAERLGLRFVDA 199 (217)
T ss_pred cccchhhHHHHHHHHHhCCEEEeCCHHHHHHHHHcCCeeecH
Confidence 6699999999888722 788888889999999999999874
No 275
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=28.29 E-value=1.2e+02 Score=29.72 Aligned_cols=48 Identities=6% Similarity=-0.092 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceee
Q 008479 391 GCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSF 442 (564)
Q Consensus 391 G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~ 442 (564)
+..+.++.++++| +++++.|+- +..-+...+++.|+..--|.+|--..
T Consensus 19 ~~~~ai~~l~~~G---~~~vi~TgR-~~~~~~~~~~~lg~~~~~I~~NGa~I 66 (225)
T TIGR02461 19 PAREALEELKDLG---FPIVFVSSK-TRAEQEYYREELGVEPPFIVENGGAI 66 (225)
T ss_pred HHHHHHHHHHHCC---CEEEEEeCC-CHHHHHHHHHHcCCCCcEEEcCCcEE
Confidence 3467788889888 999999987 36667888888886433455554433
No 276
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=28.06 E-value=1.1e+02 Score=30.53 Aligned_cols=41 Identities=7% Similarity=0.121 Sum_probs=30.9
Q ss_pred CCccHHHHHHHHHHcCCCCCcEEEEcccc--CHHHHHHHHhhcCCC
Q 008479 388 LQDGCTTFFQKVVKNENLNANVHVLSYCW--CGDLIRASFSSAGLN 431 (564)
Q Consensus 388 lr~G~~efl~~l~~~g~~~~~~~IvS~g~--s~~~I~~~l~~~g~~ 431 (564)
+-||..++++.++++| ++++++|++- +..-+...|...|++
T Consensus 22 ~~~~a~~al~~l~~~G---~~~~~~Tn~~~~~~~~~~~~l~~~g~~ 64 (257)
T TIGR01458 22 AVPGSQEAVKRLRGAS---VKVRFVTNTTKESKQDLLERLQRLGFD 64 (257)
T ss_pred cCCCHHHHHHHHHHCC---CeEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 5678999999999999 9999999853 223455666667753
No 277
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=28.02 E-value=33 Score=35.32 Aligned_cols=17 Identities=18% Similarity=0.108 Sum_probs=14.3
Q ss_pred CCCeEEeeccccceecc
Q 008479 261 GDRLIIFSDFDLTCTIV 277 (564)
Q Consensus 261 ~~~~lii~DFD~TiT~~ 277 (564)
..+.+|+||.||||++.
T Consensus 124 ~~~kvIvFDLDgTLi~~ 140 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITD 140 (301)
T ss_pred ccceEEEEecCCCCcCC
Confidence 45669999999999875
No 278
>PRK07411 hypothetical protein; Validated
Probab=27.02 E-value=8e+02 Score=26.23 Aligned_cols=136 Identities=10% Similarity=0.087 Sum_probs=74.8
Q ss_pred CCHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCCcEEEEccc-cCHHHHHHHHhhcCCCceeEEeeceeecCcccccccc
Q 008479 374 INLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYC-WCGDLIRASFSSAGLNALNVHANEFSFKESISTGEII 452 (564)
Q Consensus 374 i~~~~i~~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g-~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~ 452 (564)
++..++.++.+++.+..=-.+--+++++ ..+.||-.| . +-.|-..|...|+..+.++=++..-..+ ....+.
T Consensus 11 l~~~~~~ry~Rq~~l~~~g~~~q~~L~~-----~~VlivG~GGl-G~~va~~La~~Gvg~l~lvD~D~ve~sN-L~RQ~l 83 (390)
T PRK07411 11 LSKDEYERYSRHLILPEVGLEGQKRLKA-----ASVLCIGTGGL-GSPLLLYLAAAGIGRIGIVDFDVVDSSN-LQRQVI 83 (390)
T ss_pred CCHHHHHHhhceechhhcCHHHHHHHhc-----CcEEEECCCHH-HHHHHHHHHHcCCCEEEEECCCEecccc-cCcCcc
Confidence 3555566665555443322344455554 457777654 4 4455555666687666555444322211 111111
Q ss_pred -ccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCc---cchhhhhhcCccEEEcC--C----hhHHHHHHhhCCcee
Q 008479 453 -EKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSV---GDLLCLLEADIGIVIGS--S----SSLRRVGSQFGVTFI 520 (564)
Q Consensus 453 -~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~---~Dl~~l~~Ad~giv~~~--~----~~L~~~~~~~gi~~~ 520 (564)
...-.|..|.....+.+...+. .-++..+-... ++...+...| +|+.. + -.|-++|.+.+++++
T Consensus 84 ~~~~dvG~~Ka~~a~~~l~~~np--~v~v~~~~~~~~~~~~~~~~~~~D--~Vvd~~d~~~~r~~ln~~~~~~~~p~v 157 (390)
T PRK07411 84 HGTSWVGKPKIESAKNRILEINP--YCQVDLYETRLSSENALDILAPYD--VVVDGTDNFPTRYLVNDACVLLNKPNV 157 (390)
T ss_pred cChHHCCCcHHHHHHHHHHHHCC--CCeEEEEecccCHHhHHHHHhCCC--EEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 1222466799888887776553 34555555433 3345667788 55542 2 246788999998877
No 279
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=26.95 E-value=34 Score=31.80 Aligned_cols=15 Identities=20% Similarity=-0.020 Sum_probs=13.0
Q ss_pred CeEEeeccccceecc
Q 008479 263 RLIIFSDFDLTCTIV 277 (564)
Q Consensus 263 ~~lii~DFD~TiT~~ 277 (564)
=.++|+|.|||+|+.
T Consensus 8 IkLli~DVDGvLTDG 22 (170)
T COG1778 8 IKLLILDVDGVLTDG 22 (170)
T ss_pred ceEEEEeccceeecC
Confidence 348999999999985
No 280
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=26.36 E-value=3e+02 Score=27.31 Aligned_cols=103 Identities=14% Similarity=0.229 Sum_probs=56.9
Q ss_pred cHHHHHHHHHHcCCCCCc-EEEEccccCHHHHHHHHh-hcCCCceeEEeeceeecCccccccccccCCCCCchHHHHHHH
Q 008479 391 GCTTFFQKVVKNENLNAN-VHVLSYCWCGDLIRASFS-SAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNT 468 (564)
Q Consensus 391 G~~efl~~l~~~g~~~~~-~~IvS~g~s~~~I~~~l~-~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~l 468 (564)
...++++.++++| .. +.+++-+-+.+.|+.++. ..|+ +.+++- +|. ||.-........+|.+.+++.
T Consensus 117 e~~~~~~~~~~~g---~~~i~~i~P~T~~~~i~~i~~~~~~~--vy~~s~-----~g~-tG~~~~~~~~~~~~i~~lr~~ 185 (242)
T cd04724 117 EAEEFREAAKEYG---LDLIFLVAPTTPDERIKKIAELASGF--IYYVSR-----TGV-TGARTELPDDLKELIKRIRKY 185 (242)
T ss_pred HHHHHHHHHHHcC---CcEEEEeCCCCCHHHHHHHHhhCCCC--EEEEeC-----CCC-CCCccCCChhHHHHHHHHHhc
Confidence 4568899999988 64 455887766778888887 3332 322221 121 221111111222344444442
Q ss_pred HHHhCCCCCccEEEEcCCccch---hhhhh-cCccEEEcCChhHHHHHHhh
Q 008479 469 LEKYGTDRKNLSVYIGDSVGDL---LCLLE-ADIGIVIGSSSSLRRVGSQF 515 (564)
Q Consensus 469 ~~~~~~~~~~~viyiGDs~~Dl---~~l~~-Ad~giv~~~~~~L~~~~~~~ 515 (564)
. +.-|.+|=|.++- ..+.. || |+++| +.+.+...+.
T Consensus 186 ~--------~~pI~vggGI~~~e~~~~~~~~AD-gvVvG--Saiv~~~~~~ 225 (242)
T cd04724 186 T--------DLPIAVGFGISTPEQAAEVAKYAD-GVIVG--SALVKIIEEG 225 (242)
T ss_pred C--------CCcEEEEccCCCHHHHHHHHccCC-EEEEC--HHHHHHHHhc
Confidence 1 3468889999844 44433 66 88887 3455555443
No 281
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=26.19 E-value=85 Score=31.81 Aligned_cols=78 Identities=21% Similarity=0.421 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhCCCCCccEEEEcCCccchhhhhh-cCccEEEcCCh----------------------------------
Q 008479 462 VQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLE-ADIGIVIGSSS---------------------------------- 506 (564)
Q Consensus 462 ~~~l~~l~~~~~~~~~~~viyiGDs~~Dl~~l~~-Ad~giv~~~~~---------------------------------- 506 (564)
..+++++++++ ++-+...|+..-|-.++.. || +++..+.
T Consensus 76 ~~af~kIkekR----pDIl~ia~~~~EDp~~i~~~aD--i~~~~D~~~~G~~i~~~Ak~mGAktFVh~sfprhms~~~l~ 149 (275)
T PF12683_consen 76 AEAFRKIKEKR----PDILLIAGEPHEDPEVISSAAD--IVVNPDEISRGYTIVWAAKKMGAKTFVHYSFPRHMSYELLA 149 (275)
T ss_dssp HHHHHHHHHH-----TTSEEEESS--S-HHHHHHHSS--EEEE--HHHHHHHHHHHHHHTT-S-EEEEEETTGGGSHHHH
T ss_pred HHHHHHHHhcC----CCeEEEcCCCcCCHHHHhhccC--eEeccchhhccHHHHHHHHHcCCceEEEEechhhcchHHHH
Confidence 35677777763 4567788887778776665 67 4444331
Q ss_pred ----hHHHHHHhhCCceeec------Cc-hhHHhHHhhhcCCCCccccccC
Q 008479 507 ----SLRRVGSQFGVTFIPL------YP-GLVKKQKEYTEGSSSNWKEKSG 546 (564)
Q Consensus 507 ----~L~~~~~~~gi~~~p~------~~-~~~~~~~~~~~~~~~~~~~~~~ 546 (564)
.+++.|+..|++|+-. +. |+.+. ++|..+.-+.|.+.-|
T Consensus 150 ~Rr~~M~~~C~~lGi~fv~~taPDP~sd~gv~ga-qqfIlE~vp~~i~kYG 199 (275)
T PF12683_consen 150 RRRDIMEEACKDLGIKFVEVTAPDPTSDVGVAGA-QQFILEDVPKWIKKYG 199 (275)
T ss_dssp HHHHHHHHHHHHCT--EEEEEE---SSTCHHHHH-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcHHH-HHHHHHHHHHHHHHhC
Confidence 4889999999999944 32 44444 4666666667776555
No 282
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=26.12 E-value=45 Score=33.49 Aligned_cols=56 Identities=13% Similarity=0.297 Sum_probs=39.0
Q ss_pred hhhhcCccEEEcCChhHHHHHHhhCCceeecCchhHHhHHhhhcCCCCccccc-cCeEEEeCCHHHHHHhH
Q 008479 492 CLLEADIGIVIGSSSSLRRVGSQFGVTFIPLYPGLVKKQKEYTEGSSSNWKEK-SGILYTVSSWAEVHAFI 561 (564)
Q Consensus 492 ~l~~Ad~giv~~~~~~L~~~~~~~gi~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~~~W~~i~~~~ 561 (564)
++..|.++++-.-..+..+.|++.||+|+.|.. +.|... +..++.|+||+|..+.+
T Consensus 69 ~vIDATHPfA~~is~na~~a~~~~~ipylR~eR--------------p~~~~~~~~~~~~v~~~~eA~~~l 125 (249)
T PF02571_consen 69 AVIDATHPFAAEISQNAIEACRELGIPYLRFER--------------PSWQPEPDDNWHYVDSYEEAAELL 125 (249)
T ss_pred EEEECCCchHHHHHHHHHHHHhhcCcceEEEEc--------------CCcccCCCCeEEEeCCHHHHHHHH
Confidence 444555665444456899999999999999963 234332 23488899998888776
No 283
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=26.12 E-value=37 Score=31.78 Aligned_cols=16 Identities=25% Similarity=0.131 Sum_probs=13.1
Q ss_pred CCeEEeeccccceecc
Q 008479 262 DRLIIFSDFDLTCTIV 277 (564)
Q Consensus 262 ~~~lii~DFD~TiT~~ 277 (564)
+..+++||.||||+..
T Consensus 2 ~~~~~~~d~~~t~~~~ 17 (181)
T PRK08942 2 SMKAIFLDRDGVINVD 17 (181)
T ss_pred CccEEEEECCCCcccC
Confidence 4568999999999653
No 284
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=25.89 E-value=4e+02 Score=26.24 Aligned_cols=48 Identities=8% Similarity=-0.024 Sum_probs=34.2
Q ss_pred CccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeece
Q 008479 389 QDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEF 440 (564)
Q Consensus 389 r~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l 440 (564)
.+...+.++.++++| ++++|.||.- -..+..++...++...-|-+|--
T Consensus 22 ~~~~~~al~~~~~~g---~~v~iaTGR~-~~~~~~~~~~l~~~~~~I~~NGa 69 (264)
T COG0561 22 SPETKEALARLREKG---VKVVLATGRP-LPDVLSILEELGLDGPLITFNGA 69 (264)
T ss_pred CHHHHHHHHHHHHCC---CEEEEECCCC-hHHHHHHHHHcCCCccEEEeCCe
Confidence 344456777888888 9999999874 67899999888765433444433
No 285
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=25.78 E-value=1.3e+02 Score=29.31 Aligned_cols=48 Identities=23% Similarity=0.373 Sum_probs=38.6
Q ss_pred CccEEEEcC---CccchhhhhhcCccEEEcCC------hhHHHHHHhhCCceeecCc
Q 008479 477 KNLSVYIGD---SVGDLLCLLEADIGIVIGSS------SSLRRVGSQFGVTFIPLYP 524 (564)
Q Consensus 477 ~~~viyiGD---s~~Dl~~l~~Ad~giv~~~~------~~L~~~~~~~gi~~~p~~~ 524 (564)
+.+++++|= +.+|++|+..=|+=+++-.+ -.+.++|++.|++++-+..
T Consensus 65 G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT~el~~~~~~aK~~g~~liaiT~ 121 (202)
T COG0794 65 GTPAFFVGPAEALHGDLGMITPGDVVIAISGSGETKELLNLAPKAKRLGAKLIAITS 121 (202)
T ss_pred CCceEEecCchhccCCccCCCCCCEEEEEeCCCcHHHHHHHHHHHHHcCCcEEEEeC
Confidence 468999994 48999999999965555333 2689999999999998874
No 286
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=25.71 E-value=24 Score=33.06 Aligned_cols=19 Identities=26% Similarity=-0.066 Sum_probs=15.8
Q ss_pred CCeEEeeccccceecccch
Q 008479 262 DRLIIFSDFDLTCTIVDSS 280 (564)
Q Consensus 262 ~~~lii~DFD~TiT~~DT~ 280 (564)
....++.|.|||||..+|.
T Consensus 5 ~~~~~ciDIDGtit~~~t~ 23 (194)
T COG5663 5 FQLRCCIDIDGTITDDPTF 23 (194)
T ss_pred hHhheeeccCCceecCccc
Confidence 3557899999999998884
No 287
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=25.69 E-value=5.3e+02 Score=23.73 Aligned_cols=76 Identities=12% Similarity=0.046 Sum_probs=49.3
Q ss_pred HHHHHhhHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCChhHHHHHHHHHH
Q 008479 51 RHYIAQDFHFLK-AFSQAYELAEECADDDDAKLSISELRKGVLEELKMHDSFVKEWGTDLAKMATVNSATVKYTEFLLA 128 (564)
Q Consensus 51 ~~Yl~QD~~YL~-~~~r~~~~~~~~a~~~~~~~~l~~~~~~i~~E~~~h~~~~~~~gi~~~~~~~~~pa~~~Y~~~l~~ 128 (564)
-.+-.||.++.+ ...+++...+.++.+++.+..|..-+.....-.+.-+..++.+|.++.. .+.++......-...
T Consensus 6 ~~~~L~d~y~aE~q~~~~l~~~~~~a~~~~L~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~~--~~c~~~~gl~~e~~~ 82 (159)
T PF05974_consen 6 FIDELRDLYSAEKQLLKALPKLAEAASSPELKAALEEHLEETEQQIERLEQIFEALGADPSA--EKCDAMEGLVAEAQE 82 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-C--HH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcc--CcchHHHHHHHHHHH
Confidence 344467777765 7888999999999998877777666665555566666788889987752 234455555544333
No 288
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=25.08 E-value=6.9e+02 Score=25.30 Aligned_cols=109 Identities=10% Similarity=0.148 Sum_probs=59.9
Q ss_pred CcEEEEccccCHHHHHHHHhhcCCCceeEEeeceeecCcccccccc-ccCCCCCchHHHHHHHHHHhCCCCCccEEEEcC
Q 008479 407 ANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEII-EKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGD 485 (564)
Q Consensus 407 ~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~-~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGD 485 (564)
..+.|+-.|-.+-.+-..|...|+..+.|+=.+..-..+. .-.+. .....|..|...+.+.+...+. ..++..+=+
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNl-nRQ~~~~~~~vG~~Kve~~~~rl~~INP--~~~V~~i~~ 107 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNT-NRQIHALRDNVGLAKAEVMAERIRQINP--ECRVTVVDD 107 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEeccccc-ccccccChhhcChHHHHHHHHHHHhHCC--CcEEEEEec
Confidence 4577776653355666667677876665554433221111 01111 1123466799998888776542 345555533
Q ss_pred Ccc--chhhhh--hcCccEEEcCC------hhHHHHHHhhCCcee
Q 008479 486 SVG--DLLCLL--EADIGIVIGSS------SSLRRVGSQFGVTFI 520 (564)
Q Consensus 486 s~~--Dl~~l~--~Ad~giv~~~~------~~L~~~~~~~gi~~~ 520 (564)
..+ ...-+. ..| +|+.+- ..|.++|++++++++
T Consensus 108 ~i~~e~~~~ll~~~~D--~VIdaiD~~~~k~~L~~~c~~~~ip~I 150 (268)
T PRK15116 108 FITPDNVAEYMSAGFS--YVIDAIDSVRPKAALIAYCRRNKIPLV 150 (268)
T ss_pred ccChhhHHHHhcCCCC--EEEEcCCCHHHHHHHHHHHHHcCCCEE
Confidence 322 222222 366 455322 258999999999998
No 289
>PRK10444 UMP phosphatase; Provisional
Probab=25.04 E-value=1.3e+02 Score=30.06 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=30.0
Q ss_pred CCCccHHHHHHHHHHcCCCCCcEEEEccccC--HHHHHHHHhhcCC
Q 008479 387 SLQDGCTTFFQKVVKNENLNANVHVLSYCWC--GDLIRASFSSAGL 430 (564)
Q Consensus 387 ~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s--~~~I~~~l~~~g~ 430 (564)
.+-||..++++.++++| .+++++|.+-+ ..-+..-|...|+
T Consensus 17 ~~~p~a~~~l~~L~~~g---~~~~~~Tn~~~~~~~~~~~~l~~~G~ 59 (248)
T PRK10444 17 VAVPGAAEFLHRILDKG---LPLVLLTNYPSQTGQDLANRFATAGV 59 (248)
T ss_pred eeCccHHHHHHHHHHCC---CeEEEEeCCCCCCHHHHHHHHHHcCC
Confidence 45789999999999998 99999998742 2223334455665
No 290
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=24.98 E-value=35 Score=35.11 Aligned_cols=16 Identities=25% Similarity=0.086 Sum_probs=13.8
Q ss_pred CCeEEeeccccceecc
Q 008479 262 DRLIIFSDFDLTCTIV 277 (564)
Q Consensus 262 ~~~lii~DFD~TiT~~ 277 (564)
.+.+|+||.||||++.
T Consensus 127 ~~~~i~~D~D~TL~~~ 142 (303)
T PHA03398 127 IPHVIVFDLDSTLITD 142 (303)
T ss_pred eccEEEEecCCCccCC
Confidence 4679999999999875
No 291
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=24.65 E-value=1.5e+02 Score=28.43 Aligned_cols=47 Identities=15% Similarity=-0.079 Sum_probs=32.0
Q ss_pred ccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeece
Q 008479 390 DGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEF 440 (564)
Q Consensus 390 ~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l 440 (564)
|...+.++.++++| ++++|.||-- ...+.+++...+++.--|.+|--
T Consensus 23 ~~~~~al~~l~~~G---~~~~iaTGR~-~~~~~~~~~~l~~~~~~i~~nGa 69 (230)
T PRK01158 23 LKAVEAIRKAEKLG---IPVILATGNV-LCFARAAAKLIGTSGPVIAENGG 69 (230)
T ss_pred HHHHHHHHHHHHCC---CEEEEEcCCc-hHHHHHHHHHhCCCCcEEEecCe
Confidence 33455677788888 9999999864 66678888777764333445543
No 292
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=24.24 E-value=1e+02 Score=35.16 Aligned_cols=52 Identities=12% Similarity=0.014 Sum_probs=38.2
Q ss_pred cCCCCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceee
Q 008479 385 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSF 442 (564)
Q Consensus 385 ~i~lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~ 442 (564)
-+.|||++.+|++++.+. .+++|.+-|= ..+...+++=.+ +.-.++.+++..
T Consensus 199 ~vKlRP~~~efL~~~skl----femhVyTmg~-R~YA~~i~~liD-P~~~lF~dRIis 250 (635)
T KOG0323|consen 199 LVKLRPFVHEFLKEANKL----FEMHVYTMGT-RDYALEIAKLID-PEGKYFGDRIIS 250 (635)
T ss_pred EEEeCccHHHHHHHHHhh----ceeEEEeccc-hHHHHHHHHHhC-CCCccccceEEE
Confidence 579999999999999965 7999999994 888888876432 122344444443
No 293
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=24.12 E-value=5.6e+02 Score=25.34 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=59.0
Q ss_pred CcEEEEcc-ccCHHHHHHHHhhcCCCceeEEeeceeecCccccccccccCCCCCchHHHHHHHHHHhCCCCCccEEEEcC
Q 008479 407 ANVHVLSY-CWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGD 485 (564)
Q Consensus 407 ~~~~IvS~-g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGD 485 (564)
..+.|+=. |. +-.+-..|...|+..+.++=.+..-..+...=.+....-.|..|...+.+.+.+.+. .-++..+-.
T Consensus 25 ~~VlvvG~Ggl-Gs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp--~v~i~~~~~ 101 (240)
T TIGR02355 25 SRVLIVGLGGL-GCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINP--HIAINPINA 101 (240)
T ss_pred CcEEEECcCHH-HHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCC--CcEEEEEec
Confidence 45666664 44 555555666668766555433322211110000111123466799888887776643 234444432
Q ss_pred C---ccchhhhhhcCccEEEc--CC----hhHHHHHHhhCCceee
Q 008479 486 S---VGDLLCLLEADIGIVIG--SS----SSLRRVGSQFGVTFIP 521 (564)
Q Consensus 486 s---~~Dl~~l~~Ad~giv~~--~~----~~L~~~~~~~gi~~~p 521 (564)
. .++...+..+| +++. ++ ..|-++|.+.+++++-
T Consensus 102 ~i~~~~~~~~~~~~D--lVvd~~D~~~~r~~ln~~~~~~~ip~v~ 144 (240)
T TIGR02355 102 KLDDAELAALIAEHD--IVVDCTDNVEVRNQLNRQCFAAKVPLVS 144 (240)
T ss_pred cCCHHHHHHHhhcCC--EEEEcCCCHHHHHHHHHHHHHcCCCEEE
Confidence 3 23334566678 5553 22 2477899999998883
No 294
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=24.05 E-value=8.6e+02 Score=25.59 Aligned_cols=108 Identities=11% Similarity=0.127 Sum_probs=60.6
Q ss_pred CcEEEEccc-cCHHHHHHHHhhcCCCceeEEeeceeecCccccccc-cccCCCCCchHHHHHHHHHHhCCCCCccEEEEc
Q 008479 407 ANVHVLSYC-WCGDLIRASFSSAGLNALNVHANEFSFKESISTGEI-IEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIG 484 (564)
Q Consensus 407 ~~~~IvS~g-~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~-~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiG 484 (564)
..+.||=.| . +-.+-..|...|+..+.|+=.+..-..+. .-.+ ......|..|.....+.+...+. .-++..+-
T Consensus 29 ~~VlivG~GGl-Gs~~a~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~l~~~~diG~~Ka~~a~~~l~~~np--~v~v~~~~ 104 (355)
T PRK05597 29 AKVAVIGAGGL-GSPALLYLAGAGVGHITIIDDDTVDLSNL-HRQVIHSTAGVGQPKAESAREAMLALNP--DVKVTVSV 104 (355)
T ss_pred CeEEEECCCHH-HHHHHHHHHHcCCCeEEEEeCCEEccccc-ccCcccChhHCCChHHHHHHHHHHHHCC--CcEEEEEE
Confidence 456666554 4 44455556667877666655544322221 1111 11223466899888877766543 23344333
Q ss_pred C---CccchhhhhhcCccEEEcC--C----hhHHHHHHhhCCcee
Q 008479 485 D---SVGDLLCLLEADIGIVIGS--S----SSLRRVGSQFGVTFI 520 (564)
Q Consensus 485 D---s~~Dl~~l~~Ad~giv~~~--~----~~L~~~~~~~gi~~~ 520 (564)
. ..+....+..+| +|+.. + ..+-+.|.+++++++
T Consensus 105 ~~i~~~~~~~~~~~~D--vVvd~~d~~~~r~~~n~~c~~~~ip~v 147 (355)
T PRK05597 105 RRLTWSNALDELRDAD--VILDGSDNFDTRHLASWAAARLGIPHV 147 (355)
T ss_pred eecCHHHHHHHHhCCC--EEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 2 234456677788 55542 2 147788999999887
No 295
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=23.89 E-value=1.5e+02 Score=28.39 Aligned_cols=51 Identities=6% Similarity=0.055 Sum_probs=37.8
Q ss_pred CCccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeeceee
Q 008479 388 LQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSF 442 (564)
Q Consensus 388 lr~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~ 442 (564)
+.|...+.++.++++| +.++|.||-. ...+..++...++..--|.+|-...
T Consensus 16 i~~~~~~al~~l~~~g---~~~~i~TGR~-~~~~~~~~~~~~~~~~~I~~nGa~i 66 (254)
T PF08282_consen 16 ISPETIEALKELQEKG---IKLVIATGRS-YSSIKRLLKELGIDDYFICSNGALI 66 (254)
T ss_dssp SCHHHHHHHHHHHHTT---CEEEEECSST-HHHHHHHHHHTTHCSEEEEGGGTEE
T ss_pred eCHHHHHHHHhhcccc---eEEEEEccCc-ccccccccccccchhhhccccccee
Confidence 4455667788889888 9999999875 7788999988776534456665554
No 296
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=23.00 E-value=63 Score=32.42 Aligned_cols=56 Identities=13% Similarity=0.203 Sum_probs=38.1
Q ss_pred hhhhcCccEEEcCChhHHHHHHhhCCceeecCchhHHhHHhhhcCCCCcccc-ccCeEEEeCCHHHHHHhH
Q 008479 492 CLLEADIGIVIGSSSSLRRVGSQFGVTFIPLYPGLVKKQKEYTEGSSSNWKE-KSGILYTVSSWAEVHAFI 561 (564)
Q Consensus 492 ~l~~Ad~giv~~~~~~L~~~~~~~gi~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~~~W~~i~~~~ 561 (564)
++..|.++++..-..+..+.|++.||+|+.|.. +.|.. ....++.|.||++...++
T Consensus 68 ~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR--------------~~~~~~~~~~~~~v~s~~~a~~~l 124 (248)
T PRK08057 68 LVIDATHPYAAQISANAAAACRALGIPYLRLER--------------PSWLPQPGDRWIEVDDIEEAAEAL 124 (248)
T ss_pred EEEECCCccHHHHHHHHHHHHHHhCCcEEEEeC--------------CCcCCCCCCCEEEECCHHHHHHHh
Confidence 344566665555556899999999999999974 23332 223577788888776655
No 297
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=22.38 E-value=1.9e+02 Score=28.60 Aligned_cols=46 Identities=9% Similarity=-0.030 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeecee
Q 008479 392 CTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFS 441 (564)
Q Consensus 392 ~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~ 441 (564)
..+.++.++++| ++++|+|+- +..-+..++++.|++..-|-+|-..
T Consensus 21 ~~~~i~~l~~~g---~~~~~~TgR-~~~~~~~~~~~~~~~~~~I~~NGa~ 66 (256)
T TIGR01486 21 AKEVLERLQELG---IPVIPCTSK-TAAEVEYLRKELGLEDPFIVENGGA 66 (256)
T ss_pred HHHHHHHHHHCC---CeEEEEcCC-CHHHHHHHHHHcCCCCcEEEcCCeE
Confidence 467788889888 999999976 4777888998888643345566543
No 298
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=22.20 E-value=1e+02 Score=28.25 Aligned_cols=43 Identities=16% Similarity=0.022 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeec
Q 008479 391 GCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANE 439 (564)
Q Consensus 391 G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~ 439 (564)
+..++=+.+++.| ++++|+.+.. .+.+..++++.++ ..|++|+
T Consensus 54 sL~~L~~~L~~~g---~~L~v~~g~~-~~~l~~l~~~~~~--~~V~~~~ 96 (165)
T PF00875_consen 54 SLADLQESLRKLG---IPLLVLRGDP-EEVLPELAKEYGA--TAVYFNE 96 (165)
T ss_dssp HHHHHHHHHHHTT---S-EEEEESSH-HHHHHHHHHHHTE--SEEEEE-
T ss_pred HHHHHHHHHHhcC---cceEEEecch-HHHHHHHHHhcCc--CeeEecc
Confidence 3455666777778 9999999985 8888888888774 6788887
No 299
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=22.08 E-value=8.2e+02 Score=24.66 Aligned_cols=146 Identities=17% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhccCCCHHHHHHHhhcCC-----------------CCccHHHHHHHHHHcCCCCCcEEEEcc---ccCH
Q 008479 359 KRANSRVIESGVLKGINLEDIKKAGERLS-----------------LQDGCTTFFQKVVKNENLNANVHVLSY---CWCG 418 (564)
Q Consensus 359 ~~s~~rv~~~~~f~Gi~~~~i~~~~~~i~-----------------lr~G~~efl~~l~~~g~~~~~~~IvS~---g~s~ 418 (564)
.+++.|..+ +|++.+++-+.++.+. ++-|...|++.+.+.| +.=+||=+ -- .
T Consensus 58 q~A~~rAL~----~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aG---vdGlIipDLP~ee-~ 129 (259)
T PF00290_consen 58 QKASQRALK----NGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAG---VDGLIIPDLPPEE-S 129 (259)
T ss_dssp HHHHHHHHH----TT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHT---EEEEEETTSBGGG-H
T ss_pred HHHHHHHHH----CCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcC---CCEEEEcCCChHH-H
Q ss_pred HHHHHHHhhcCCCceeEEeeceeec---------Cc-cccccccccCCCCCchHHHHHHHHHHhCCCCCccEEEEcCCcc
Q 008479 419 DLIRASFSSAGLNALNVHANEFSFK---------ES-ISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVG 488 (564)
Q Consensus 419 ~~I~~~l~~~g~~~~~I~aN~l~~~---------~g-~~tG~~~~~~~~g~~K~~~l~~l~~~~~~~~~~~viyiGDs~~ 488 (564)
+-+...+.++|++.+.+++-...-+ .| +|.-...+.-....+-...+.+++.....-. +.-+++|=|.+
T Consensus 130 ~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~-~~Pv~vGFGI~ 208 (259)
T PF00290_consen 130 EELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT-DLPVAVGFGIS 208 (259)
T ss_dssp HHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT-SS-EEEESSS-
T ss_pred HHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc-CcceEEecCCC
Q ss_pred chhhhhh----cCccEEEcCChhHHHHHHhhC
Q 008479 489 DLLCLLE----ADIGIVIGSSSSLRRVGSQFG 516 (564)
Q Consensus 489 Dl~~l~~----Ad~giv~~~~~~L~~~~~~~g 516 (564)
+-+-... || |+++| +.+.+..++.+
T Consensus 209 ~~e~~~~~~~~aD-GvIVG--Sa~v~~i~~~~ 237 (259)
T PF00290_consen 209 TPEQAKKLAAGAD-GVIVG--SAFVKIIEENG 237 (259)
T ss_dssp SHHHHHHHHTTSS-EEEES--HHHHHHHHHTC
T ss_pred CHHHHHHHHccCC-EEEEC--HHHHHHHHHcc
No 300
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=21.38 E-value=1.9e+02 Score=28.81 Aligned_cols=47 Identities=6% Similarity=0.024 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeecee
Q 008479 391 GCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFS 441 (564)
Q Consensus 391 G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~ 441 (564)
...+.++.++++| +.++|.||-- ..-++.++++.+++..-|.+|--.
T Consensus 23 ~~~~ai~~l~~~G---~~~~iaTGR~-~~~~~~~~~~l~~~~~~I~~NGa~ 69 (272)
T PRK15126 23 KTLSTLARLRERD---ITLTFATGRH-VLEMQHILGALSLDAYLITGNGTR 69 (272)
T ss_pred HHHHHHHHHHHCC---CEEEEECCCC-HHHHHHHHHHcCCCCcEEecCCcE
Confidence 3345677788888 9999999863 667888888877643334455543
No 301
>cd03769 SR_IS607_transposase_like Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.
Probab=21.34 E-value=1.8e+02 Score=25.95 Aligned_cols=39 Identities=18% Similarity=0.353 Sum_probs=27.4
Q ss_pred CCccHHHHHHHHHHcCCCCCcEEEEcc------ccCHHHHHHHHhhcCC
Q 008479 388 LQDGCTTFFQKVVKNENLNANVHVLSY------CWCGDLIRASFSSAGL 430 (564)
Q Consensus 388 lr~G~~efl~~l~~~g~~~~~~~IvS~------g~s~~~I~~~l~~~g~ 430 (564)
=|||+.++++.+++.. +.++||.. +. .+++...+..+|+
T Consensus 47 ~Rp~l~~ll~~i~~g~---~d~lvV~~ldRl~R~~-~d~~~~~l~~~gv 91 (134)
T cd03769 47 KRKGLLKLLEDVLAGK---VERVVITYKDRLARFG-FELLEELFKAYGV 91 (134)
T ss_pred CCHHHHHHHHHHHcCC---CCEEEEEeccHHHHhh-HHHHHHHHHHCCC
Confidence 4999999999998755 67777753 22 4556566666664
No 302
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=21.13 E-value=4.8e+02 Score=25.74 Aligned_cols=45 Identities=7% Similarity=-0.107 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCc--e-eEEeece
Q 008479 392 CTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--L-NVHANEF 440 (564)
Q Consensus 392 ~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~-~I~aN~l 440 (564)
..+.++.++++| +.++|.||-. ..-+..++++.++.. . -|.+|-.
T Consensus 25 ~~~ai~~l~~~G---~~~~iaTGR~-~~~~~~~~~~l~~~~~~~~~I~~NGa 72 (270)
T PRK10513 25 VKQAIAAARAKG---VNVVLTTGRP-YAGVHRYLKELHMEQPGDYCITNNGA 72 (270)
T ss_pred HHHHHHHHHHCC---CEEEEecCCC-hHHHHHHHHHhCCCCCCCeEEEcCCe
Confidence 346677888888 9999999864 666788888877642 2 2445544
No 303
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=21.11 E-value=52 Score=30.69 Aligned_cols=13 Identities=46% Similarity=0.353 Sum_probs=11.3
Q ss_pred eEEeeccccceec
Q 008479 264 LIIFSDFDLTCTI 276 (564)
Q Consensus 264 ~lii~DFD~TiT~ 276 (564)
..+++|.||||+.
T Consensus 2 ~~~~~D~Dgtl~~ 14 (176)
T TIGR00213 2 KAIFLDRDGTINI 14 (176)
T ss_pred CEEEEeCCCCEeC
Confidence 4789999999984
No 304
>PRK13689 hypothetical protein; Provisional
Probab=20.87 E-value=2.6e+02 Score=22.52 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=33.8
Q ss_pred cccCChhHHHHHHHHHHHHHHHhcc-------------------CCHHHHHHHHHHHHHHHHH
Q 008479 192 DNYSSESFQASALQNEDLLDKLSVS-------------------LTGEELDIIEKLYHQAMKL 235 (564)
Q Consensus 192 ~~y~s~~f~~~v~~l~~~ld~~~~~-------------------~~~~~~~~~~~~F~~~~~l 235 (564)
.-|+++.++.....+...|++.-.. ..+++++.+.+.|.+++.-
T Consensus 5 SKYsd~qvE~il~el~~VLeKH~Ap~DLSLMvLGN~vTnlln~~V~~~qR~~iAe~Fa~AL~~ 67 (75)
T PRK13689 5 SKYSDEQVEQLLAELLAVLEKHKAPTDLSLMVLGNMVTNLLNTSVAPAQRQAIAESFARALQS 67 (75)
T ss_pred ccccHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 3588888888888888888875322 2468899999999988753
No 305
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=20.71 E-value=3e+02 Score=28.27 Aligned_cols=38 Identities=18% Similarity=0.368 Sum_probs=29.8
Q ss_pred ccHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCC
Q 008479 390 DGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGL 430 (564)
Q Consensus 390 ~G~~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~ 430 (564)
+|+..+-+.+++.| .++.||++-.+...++..++..+.
T Consensus 63 ~GA~aLa~aL~~lG---~~~~ivtd~~~~~~~~~~~~~~~~ 100 (291)
T PF14336_consen 63 PGAAALARALQALG---KEVVIVTDERCAPVVKAAVRAAGL 100 (291)
T ss_pred HHHHHHHHHHHHcC---CeEEEEECHHHHHHHHHHHHHHhh
Confidence 46788888888877 899999987777788887765543
No 306
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=20.70 E-value=1.7e+02 Score=29.58 Aligned_cols=40 Identities=8% Similarity=0.178 Sum_probs=27.0
Q ss_pred CCccHHHHHHHHHHcCCCCCcEEEEcccc--CHHHHHHHHhhcCC
Q 008479 388 LQDGCTTFFQKVVKNENLNANVHVLSYCW--CGDLIRASFSSAGL 430 (564)
Q Consensus 388 lr~G~~efl~~l~~~g~~~~~~~IvS~g~--s~~~I~~~l~~~g~ 430 (564)
.-||+.++++.++++| ++++++|.+- +..-+..-|++.|+
T Consensus 19 ~~~ga~e~l~~L~~~g---~~~~~~Tnns~~~~~~~~~~l~~~G~ 60 (279)
T TIGR01452 19 VVPGAPELLDRLARAG---KAALFVTNNSTKSRAEYALKFARLGF 60 (279)
T ss_pred eCcCHHHHHHHHHHCC---CeEEEEeCCCCCCHHHHHHHHHHcCC
Confidence 3466788899999888 8999999752 22222244566665
No 307
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=20.64 E-value=2e+02 Score=28.40 Aligned_cols=45 Identities=9% Similarity=0.046 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCceeEEeecee
Q 008479 393 TTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFS 441 (564)
Q Consensus 393 ~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~ 441 (564)
.+.++.++++| +.++|.||-- ...+...+++.+++.--|.+|-..
T Consensus 26 ~~ai~~~~~~G---~~~~iaTGR~-~~~~~~~~~~l~~~~~~I~~NGa~ 70 (272)
T PRK10530 26 LEALARAREAG---YKVIIVTGRH-HVAIHPFYQALALDTPAICCNGTY 70 (272)
T ss_pred HHHHHHHHHCC---CEEEEEcCCC-hHHHHHHHHhcCCCCCEEEcCCcE
Confidence 45667788888 9999999864 566788888877643345566543
No 308
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=20.17 E-value=2.1e+02 Score=28.64 Aligned_cols=44 Identities=14% Similarity=0.121 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHhhcCCCce-eEEeece
Q 008479 393 TTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNAL-NVHANEF 440 (564)
Q Consensus 393 ~efl~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~-~I~aN~l 440 (564)
.+.++.++++| ++++|.||-- ..-+.+++++.|++.. -|-+|--
T Consensus 30 ~~ai~~l~~~G---i~~viaTGR~-~~~i~~~~~~l~~~~~~~I~~NGa 74 (271)
T PRK03669 30 APWLTRLREAQ---VPVILCSSKT-AAEMLPLQQTLGLQGLPLIAENGA 74 (271)
T ss_pred HHHHHHHHHcC---CeEEEEcCCC-HHHHHHHHHHhCCCCCcEEEeCCC
Confidence 45567788888 9999999874 6778888888776422 3445554
No 309
>PLN02591 tryptophan synthase
Probab=20.09 E-value=8.8e+02 Score=24.25 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=18.5
Q ss_pred ccEEEEcCCcc---chhhhhh--cCccEEEcC
Q 008479 478 NLSVYIGDSVG---DLLCLLE--ADIGIVIGS 504 (564)
Q Consensus 478 ~~viyiGDs~~---Dl~~l~~--Ad~giv~~~ 504 (564)
+.-+++|=|.+ |...+.. || |+++|.
T Consensus 189 ~~Pv~vGFGI~~~e~v~~~~~~GAD-GvIVGS 219 (250)
T PLN02591 189 DKPVAVGFGISKPEHAKQIAGWGAD-GVIVGS 219 (250)
T ss_pred CCceEEeCCCCCHHHHHHHHhcCCC-EEEECH
Confidence 45577898888 6666555 66 999973
Done!